Query 002990
Match_columns 860
No_of_seqs 547 out of 4269
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 14:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2187 tRNA uracil-5-methyltr 100.0 1E-86 2.2E-91 740.9 35.1 505 168-854 28-534 (534)
2 TIGR02085 meth_trns_rumB 23S r 100.0 2.9E-64 6.2E-69 563.8 43.6 365 301-860 9-374 (374)
3 COG2265 TrmA SAM-dependent met 100.0 2.4E-64 5.1E-69 570.2 38.0 359 301-854 74-432 (432)
4 TIGR00479 rumA 23S rRNA (uraci 100.0 2.1E-61 4.5E-66 550.0 43.4 369 301-853 63-431 (431)
5 PRK05031 tRNA (uracil-5-)-meth 100.0 2.2E-61 4.8E-66 538.4 39.8 357 302-860 1-361 (362)
6 PF05958 tRNA_U5-meth_tr: tRNA 100.0 5.7E-60 1.2E-64 525.1 31.8 347 311-860 1-351 (352)
7 PRK13168 rumA 23S rRNA m(5)U19 100.0 3.4E-57 7.4E-62 517.2 40.1 357 301-860 85-442 (443)
8 TIGR02143 trmA_only tRNA (urac 100.0 7.1E-56 1.5E-60 492.5 40.1 348 311-860 1-352 (353)
9 PRK03522 rumB 23S rRNA methylu 100.0 1.5E-50 3.2E-55 443.7 36.9 308 386-860 7-314 (315)
10 PRK04338 N(2),N(2)-dimethylgua 99.8 2.8E-18 6.1E-23 193.2 14.6 150 575-850 30-183 (382)
11 PRK10909 rsmD 16S rRNA m(2)G96 99.7 9.9E-17 2.1E-21 165.8 13.9 139 566-788 20-163 (199)
12 TIGR03704 PrmC_rel_meth putati 99.4 5E-12 1.1E-16 135.3 15.1 92 565-661 51-145 (251)
13 TIGR03533 L3_gln_methyl protei 99.4 1.3E-11 2.8E-16 134.4 18.1 93 566-659 87-182 (284)
14 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1.2E-11 2.5E-16 150.0 17.4 151 562-796 501-668 (702)
15 PF05175 MTS: Methyltransferas 99.3 1.1E-11 2.4E-16 124.9 12.9 86 569-658 2-90 (170)
16 PRK11805 N5-glutamine S-adenos 99.3 2.7E-11 5.8E-16 133.4 15.8 94 566-660 99-195 (307)
17 PRK15128 23S rRNA m(5)C1962 me 99.3 6.3E-11 1.4E-15 134.6 18.7 97 562-665 183-287 (396)
18 PLN03134 glycine-rich RNA-bind 99.3 2.4E-11 5.2E-16 119.8 10.7 81 162-242 31-116 (144)
19 TIGR00095 RNA methyltransferas 99.3 1.4E-10 2.9E-15 119.3 16.2 95 567-664 17-114 (189)
20 PLN03213 repressor of silencin 99.3 1.2E-11 2.7E-16 137.3 9.0 83 162-244 7-92 (759)
21 TIGR00080 pimt protein-L-isoas 99.3 1.7E-11 3.7E-16 127.9 9.7 99 562-660 38-139 (215)
22 COG1092 Predicted SAM-dependen 99.2 2.6E-10 5.6E-15 128.7 16.6 96 565-667 183-286 (393)
23 PF00076 RRM_1: RNA recognitio 99.2 4.9E-11 1.1E-15 100.7 7.8 66 168-233 1-70 (70)
24 PF10672 Methyltrans_SAM: S-ad 99.2 4.8E-10 1E-14 122.0 16.6 97 562-665 86-190 (286)
25 TIGR00308 TRM1 tRNA(guanine-26 99.2 3.2E-10 7E-15 127.8 15.8 62 603-664 46-110 (374)
26 KOG0125 Ataxin 2-binding prote 99.2 5.8E-11 1.3E-15 127.2 8.7 80 165-244 96-178 (376)
27 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.2E-10 4.8E-15 123.5 13.3 65 596-660 66-133 (264)
28 PRK14901 16S rRNA methyltransf 99.2 8.8E-11 1.9E-15 135.1 10.3 69 593-661 244-315 (434)
29 PF03602 Cons_hypoth95: Conser 99.2 3.1E-10 6.7E-15 116.2 13.1 140 568-787 10-156 (183)
30 COG4123 Predicted O-methyltran 99.1 4.1E-10 8.8E-15 119.7 13.8 71 593-663 36-109 (248)
31 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.1 1.1E-10 2.5E-15 129.4 10.1 79 163-241 267-350 (352)
32 PRK14902 16S rRNA methyltransf 99.1 2.7E-10 5.9E-15 131.4 13.0 66 595-660 244-312 (444)
33 TIGR00536 hemK_fam HemK family 99.1 1.8E-10 3.9E-15 125.4 10.8 94 565-660 79-176 (284)
34 COG2890 HemK Methylase of poly 99.1 1.6E-10 3.5E-15 125.7 10.2 93 565-660 77-171 (280)
35 PF13659 Methyltransf_26: Meth 99.1 2.5E-10 5.5E-15 106.4 10.2 61 602-662 1-63 (117)
36 PRK14966 unknown domain/N5-glu 99.1 7.3E-10 1.6E-14 125.6 15.7 91 565-660 219-311 (423)
37 COG2263 Predicted RNA methylas 99.1 7.2E-10 1.6E-14 112.5 13.0 78 581-660 26-104 (198)
38 TIGR03534 RF_mod_PrmC protein- 99.1 2.5E-09 5.4E-14 112.9 15.0 92 566-660 55-148 (251)
39 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.0 4.4E-10 9.4E-15 124.8 9.4 77 165-241 3-84 (352)
40 PRK14904 16S rRNA methyltransf 99.0 1.3E-09 2.7E-14 126.0 13.1 66 595-660 244-312 (445)
41 PRK00121 trmB tRNA (guanine-N( 99.0 3.3E-09 7.1E-14 110.0 14.9 118 601-797 40-169 (202)
42 COG0742 N6-adenine-specific me 99.0 3.7E-09 8E-14 108.0 14.8 96 568-665 11-109 (187)
43 PRK14903 16S rRNA methyltransf 99.0 2.2E-09 4.9E-14 123.4 15.0 67 595-661 231-300 (431)
44 TIGR01659 sex-lethal sex-letha 99.0 7E-10 1.5E-14 124.0 10.3 78 162-239 104-186 (346)
45 PRK00377 cbiT cobalt-precorrin 99.0 3E-09 6.5E-14 109.6 13.8 75 588-662 27-105 (198)
46 PF09445 Methyltransf_15: RNA 99.0 1E-09 2.2E-14 110.2 8.9 62 603-664 1-63 (163)
47 PRK07402 precorrin-6B methylas 99.0 6.5E-09 1.4E-13 106.8 15.1 71 592-662 31-103 (196)
48 PF14259 RRM_6: RNA recognitio 99.0 1.2E-09 2.6E-14 93.3 7.7 66 168-233 1-70 (70)
49 PRK09489 rsmC 16S ribosomal RN 99.0 7E-09 1.5E-13 116.0 15.0 88 566-658 164-254 (342)
50 TIGR00091 tRNA (guanine-N(7)-) 99.0 8.4E-09 1.8E-13 106.2 14.4 118 601-797 16-145 (194)
51 PF02475 Met_10: Met-10+ like- 99.0 3.4E-09 7.4E-14 109.9 11.3 104 555-663 57-166 (200)
52 PRK01544 bifunctional N5-gluta 99.0 6.1E-09 1.3E-13 122.1 14.8 93 565-659 80-199 (506)
53 PF13847 Methyltransf_31: Meth 98.9 2.4E-09 5.1E-14 105.4 8.9 61 600-660 2-65 (152)
54 TIGR01177 conserved hypothetic 98.9 5.3E-09 1.2E-13 116.2 12.4 70 591-660 172-241 (329)
55 PRK10901 16S rRNA methyltransf 98.9 6.3E-09 1.4E-13 119.6 13.3 66 594-660 237-304 (427)
56 PF12847 Methyltransf_18: Meth 98.9 5.2E-09 1.1E-13 96.7 10.1 58 601-658 1-61 (112)
57 PRK15001 SAM-dependent 23S rib 98.9 8.2E-09 1.8E-13 116.6 13.5 87 569-658 199-290 (378)
58 TIGR01645 half-pint poly-U bin 98.9 2.9E-09 6.2E-14 125.8 9.8 77 165-241 204-285 (612)
59 KOG0117 Heterogeneous nuclear 98.9 2.2E-09 4.8E-14 119.1 8.1 82 157-238 74-162 (506)
60 PRK14967 putative methyltransf 98.9 2.5E-08 5.4E-13 104.7 15.1 89 568-660 6-95 (223)
61 PRK09328 N5-glutamine S-adenos 98.9 1.2E-08 2.6E-13 109.6 12.9 91 566-658 75-167 (275)
62 PLN03120 nucleic acid binding 98.9 6.3E-09 1.4E-13 110.8 9.9 72 166-238 5-78 (260)
63 TIGR00138 gidB 16S rRNA methyl 98.9 2.7E-08 5.9E-13 101.7 14.1 60 601-660 42-103 (181)
64 smart00362 RRM_2 RNA recogniti 98.9 8.7E-09 1.9E-13 85.5 8.6 69 167-235 1-72 (72)
65 PF01170 UPF0020: Putative RNA 98.9 4.3E-09 9.2E-14 107.4 7.9 75 586-660 13-99 (179)
66 PLN02585 magnesium protoporphy 98.9 1.3E-08 2.8E-13 112.6 12.1 60 601-660 144-208 (315)
67 PTZ00338 dimethyladenosine tra 98.9 2.1E-08 4.5E-13 110.0 13.4 87 574-660 9-96 (294)
68 TIGR02469 CbiT precorrin-6Y C5 98.9 3E-08 6.6E-13 92.6 12.6 71 590-660 8-80 (124)
69 TIGR01628 PABP-1234 polyadenyl 98.8 1E-08 2.2E-13 121.5 10.9 79 163-241 283-365 (562)
70 COG2813 RsmC 16S RNA G1207 met 98.8 2.7E-08 5.8E-13 108.1 13.1 88 567-657 127-216 (300)
71 TIGR01659 sex-lethal sex-letha 98.8 9.2E-09 2E-13 115.1 9.9 78 165-242 193-277 (346)
72 PRK08287 cobalt-precorrin-6Y C 98.8 4.3E-08 9.4E-13 99.9 14.0 71 588-658 18-90 (187)
73 smart00360 RRM RNA recognition 98.8 1.2E-08 2.6E-13 84.2 7.5 66 170-235 1-71 (71)
74 TIGR00563 rsmB ribosomal RNA s 98.8 2.8E-08 6E-13 114.3 12.8 66 593-658 230-298 (426)
75 KOG0122 Translation initiation 98.8 1.6E-08 3.5E-13 105.3 9.4 77 164-240 188-269 (270)
76 COG2520 Predicted methyltransf 98.8 2.4E-08 5.3E-13 110.8 11.1 93 567-665 158-254 (341)
77 TIGR01645 half-pint poly-U bin 98.8 1.2E-08 2.6E-13 120.7 8.6 74 163-236 105-183 (612)
78 TIGR02021 BchM-ChlM magnesium 98.8 6.1E-08 1.3E-12 101.2 12.4 77 584-660 36-115 (219)
79 TIGR00537 hemK_rel_arch HemK-r 98.8 7.2E-08 1.6E-12 97.6 12.4 60 600-660 18-77 (179)
80 KOG0107 Alternative splicing f 98.7 1.8E-08 4E-13 100.3 7.3 77 164-240 9-85 (195)
81 PLN02672 methionine S-methyltr 98.7 4.2E-08 9.2E-13 122.3 12.0 95 565-662 83-197 (1082)
82 TIGR01642 U2AF_lg U2 snRNP aux 98.7 3.5E-08 7.6E-13 115.2 10.4 76 164-239 294-374 (509)
83 TIGR00406 prmA ribosomal prote 98.7 1.8E-07 3.8E-12 102.3 14.8 89 568-657 127-217 (288)
84 PRK00107 gidB 16S rRNA methylt 98.7 1.5E-07 3.3E-12 96.8 12.8 60 601-660 45-106 (187)
85 COG2242 CobL Precorrin-6B meth 98.7 5.6E-08 1.2E-12 99.0 9.4 74 592-665 25-100 (187)
86 TIGR01648 hnRNP-R-Q heterogene 98.7 3.8E-08 8.1E-13 116.2 9.2 77 162-238 55-136 (578)
87 COG2264 PrmA Ribosomal protein 98.7 7.2E-08 1.6E-12 105.2 9.8 82 567-650 129-212 (300)
88 TIGR01628 PABP-1234 polyadenyl 98.7 5.6E-08 1.2E-12 115.3 9.6 72 167-238 2-78 (562)
89 TIGR01622 SF-CC1 splicing fact 98.7 5.3E-08 1.1E-12 112.2 9.0 74 165-238 186-264 (457)
90 COG0724 RNA-binding proteins ( 98.7 7.4E-08 1.6E-12 99.4 9.1 75 165-239 115-194 (306)
91 TIGR01648 hnRNP-R-Q heterogene 98.7 6.3E-08 1.4E-12 114.4 9.6 73 166-241 234-308 (578)
92 KOG0117 Heterogeneous nuclear 98.7 4.6E-08 1E-12 108.8 7.8 75 168-245 262-336 (506)
93 cd00590 RRM RRM (RNA recogniti 98.6 1.6E-07 3.5E-12 78.2 9.3 69 167-235 1-73 (74)
94 PF06325 PrmA: Ribosomal prote 98.6 8.7E-08 1.9E-12 105.0 9.7 81 568-650 129-211 (295)
95 KOG0149 Predicted RNA-binding 98.6 3.6E-08 7.8E-13 102.4 5.9 72 165-237 12-88 (247)
96 PRK00312 pcm protein-L-isoaspa 98.6 1.4E-07 2.9E-12 98.2 10.3 69 590-658 67-135 (212)
97 PRK11933 yebU rRNA (cytosine-C 98.6 3E-07 6.4E-12 106.8 14.0 63 598-660 110-175 (470)
98 PLN02781 Probable caffeoyl-CoA 98.6 4E-07 8.8E-12 96.7 13.6 83 580-666 51-137 (234)
99 PLN03121 nucleic acid binding 98.6 1.1E-07 2.4E-12 100.0 9.1 74 164-238 4-79 (243)
100 smart00650 rADc Ribosomal RNA 98.6 2.4E-07 5.2E-12 93.1 11.1 68 591-660 3-70 (169)
101 PRK14968 putative methyltransf 98.6 6.5E-07 1.4E-11 90.2 14.1 59 600-658 22-82 (188)
102 PRK13944 protein-L-isoaspartat 98.6 1.4E-07 3E-12 98.1 9.4 75 586-660 57-135 (205)
103 TIGR01622 SF-CC1 splicing fact 98.6 1.3E-07 2.8E-12 109.0 10.1 76 162-238 86-166 (457)
104 TIGR01642 U2AF_lg U2 snRNP aux 98.6 8E-08 1.7E-12 112.2 8.3 73 163-236 173-256 (509)
105 KOG3420 Predicted RNA methylas 98.6 7E-08 1.5E-12 94.1 6.3 79 581-660 28-107 (185)
106 PRK12335 tellurite resistance 98.6 1.4E-07 3E-12 102.9 8.7 90 569-660 89-178 (287)
107 PRK11036 putative S-adenosyl-L 98.6 5.9E-07 1.3E-11 96.2 13.3 62 600-661 43-105 (255)
108 PRK00274 ksgA 16S ribosomal RN 98.6 2.8E-07 6.1E-12 99.9 10.9 69 589-660 30-98 (272)
109 PRK13943 protein-L-isoaspartat 98.6 5.3E-07 1.2E-11 100.1 13.2 72 589-660 68-142 (322)
110 COG0116 Predicted N6-adenine-s 98.6 3.1E-07 6.7E-12 102.9 11.3 78 583-660 173-292 (381)
111 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.6 2E-07 4.3E-12 108.9 10.3 77 163-240 273-351 (481)
112 KOG0108 mRNA cleavage and poly 98.6 1.5E-07 3.1E-12 107.6 8.8 74 166-239 19-97 (435)
113 COG2226 UbiE Methylase involve 98.6 1.9E-07 4.2E-12 99.3 9.1 69 593-661 43-113 (238)
114 PRK00517 prmA ribosomal protei 98.6 9.4E-07 2E-11 94.6 14.4 78 569-648 88-167 (250)
115 PRK14121 tRNA (guanine-N(7)-)- 98.6 8.3E-07 1.8E-11 100.5 14.5 64 599-662 120-185 (390)
116 KOG2904 Predicted methyltransf 98.5 1.4E-07 3.1E-12 100.3 7.7 90 565-656 111-206 (328)
117 PRK13942 protein-L-isoaspartat 98.5 2.9E-07 6.3E-12 96.2 9.6 73 587-659 62-137 (212)
118 PRK11207 tellurite resistance 98.5 3E-07 6.6E-12 94.9 9.2 63 598-660 27-89 (197)
119 PRK05134 bifunctional 3-demeth 98.5 1.6E-06 3.5E-11 91.0 14.2 87 574-661 21-107 (233)
120 PF00642 zf-CCCH: Zinc finger 98.5 2.7E-08 5.8E-13 70.8 0.3 27 81-107 1-27 (27)
121 KOG0127 Nucleolar protein fibr 98.5 3.4E-07 7.3E-12 104.0 9.1 77 165-241 292-379 (678)
122 PF01209 Ubie_methyltran: ubiE 98.5 2.4E-07 5.3E-12 98.4 7.5 69 593-661 39-110 (233)
123 COG2227 UbiG 2-polyprenyl-3-me 98.5 3.6E-07 7.7E-12 96.4 8.3 61 601-662 59-119 (243)
124 PLN02476 O-methyltransferase 98.5 3.4E-06 7.5E-11 91.8 16.0 83 580-666 101-187 (278)
125 PF13893 RRM_5: RNA recognitio 98.5 5.5E-07 1.2E-11 74.0 7.5 55 182-237 1-56 (56)
126 PRK04266 fibrillarin; Provisio 98.5 3.3E-06 7.1E-11 89.5 15.2 63 595-659 66-130 (226)
127 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.5 1.9E-06 4.1E-11 94.2 13.7 69 596-664 80-151 (283)
128 smart00361 RRM_1 RNA recogniti 98.5 3.9E-07 8.5E-12 78.7 6.7 56 179-234 2-69 (70)
129 PF01135 PCMT: Protein-L-isoas 98.4 6.4E-07 1.4E-11 93.8 8.3 73 587-659 58-133 (209)
130 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.4 6.6E-07 1.4E-11 104.5 9.4 76 165-240 394-480 (481)
131 TIGR02752 MenG_heptapren 2-hep 98.4 1E-06 2.2E-11 92.3 9.8 68 593-660 37-107 (231)
132 PRK14896 ksgA 16S ribosomal RN 98.4 6.3E-07 1.4E-11 96.5 8.1 71 588-660 16-86 (258)
133 PRK11783 rlmL 23S rRNA m(2)G24 98.4 2E-06 4.4E-11 104.8 13.4 74 587-660 175-294 (702)
134 KOG0105 Alternative splicing f 98.4 3.6E-07 7.9E-12 91.7 5.6 74 165-238 6-81 (241)
135 KOG0145 RNA-binding protein EL 98.4 8.6E-07 1.9E-11 93.0 8.4 80 165-244 41-125 (360)
136 PLN02244 tocopherol O-methyltr 98.4 1.5E-06 3.2E-11 97.3 10.3 78 583-660 95-179 (340)
137 KOG0148 Apoptosis-promoting RN 98.3 7.8E-07 1.7E-11 94.0 7.1 76 166-241 63-143 (321)
138 COG2518 Pcm Protein-L-isoaspar 98.3 1.5E-06 3.2E-11 90.5 9.1 70 589-658 60-129 (209)
139 COG1041 Predicted DNA modifica 98.3 6E-07 1.3E-11 99.4 6.6 84 576-660 173-257 (347)
140 TIGR00477 tehB tellurite resis 98.3 1.4E-06 3E-11 89.9 8.8 64 595-659 24-87 (195)
141 TIGR01983 UbiG ubiquinone bios 98.3 5E-06 1.1E-10 86.6 13.0 87 575-661 15-105 (224)
142 KOG0127 Nucleolar protein fibr 98.3 8.6E-07 1.9E-11 100.8 7.7 76 165-240 117-196 (678)
143 PRK04457 spermidine synthase; 98.3 1.7E-05 3.6E-10 85.9 16.8 64 601-664 66-132 (262)
144 PRK11727 23S rRNA mA1618 methy 98.3 3.2E-06 7E-11 93.8 11.4 60 601-660 114-178 (321)
145 PRK10742 putative methyltransf 98.3 3E-06 6.6E-11 90.4 10.4 73 592-664 77-160 (250)
146 COG0144 Sun tRNA and rRNA cyto 98.3 4.3E-06 9.3E-11 94.2 12.2 68 593-660 148-219 (355)
147 KOG4207 Predicted splicing fac 98.3 8.2E-07 1.8E-11 90.7 5.7 73 166-238 14-91 (256)
148 KOG2730 Methylase [General fun 98.3 1.9E-06 4.2E-11 89.4 8.4 79 584-665 80-159 (263)
149 PHA03411 putative methyltransf 98.3 2.5E-06 5.4E-11 92.4 9.1 56 601-661 64-121 (279)
150 PHA03412 putative methyltransf 98.3 2.1E-06 4.6E-11 91.1 8.1 53 602-659 50-107 (241)
151 KOG0147 Transcriptional coacti 98.3 1.1E-06 2.3E-11 100.5 6.2 81 162-242 275-360 (549)
152 KOG0153 Predicted RNA-binding 98.3 2E-06 4.4E-11 93.7 8.0 138 76-239 151-302 (377)
153 COG2230 Cfa Cyclopropane fatty 98.3 3.3E-06 7.2E-11 91.7 9.7 72 590-661 61-134 (283)
154 TIGR00755 ksgA dimethyladenosi 98.3 2.1E-06 4.6E-11 92.0 8.1 72 587-660 15-86 (253)
155 PLN02396 hexaprenyldihydroxybe 98.3 4.1E-06 9E-11 93.1 10.6 62 600-661 130-192 (322)
156 KOG0144 RNA-binding protein CU 98.3 9.3E-07 2E-11 98.3 5.3 78 164-241 123-207 (510)
157 KOG0111 Cyclophilin-type pepti 98.3 6.5E-07 1.4E-11 91.9 3.8 74 167-240 12-90 (298)
158 cd02440 AdoMet_MTases S-adenos 98.2 7.7E-06 1.7E-10 71.6 10.3 58 604-661 1-59 (107)
159 PRK14103 trans-aconitate 2-met 98.2 4.8E-06 1E-10 89.2 10.5 62 592-660 20-83 (255)
160 KOG0131 Splicing factor 3b, su 98.2 2E-06 4.3E-11 86.5 6.9 76 163-238 7-87 (203)
161 PRK01683 trans-aconitate 2-met 98.2 7.7E-06 1.7E-10 87.4 11.9 65 591-660 21-87 (258)
162 KOG0126 Predicted RNA-binding 98.2 1.4E-07 3E-12 94.6 -1.6 71 167-237 37-112 (219)
163 KOG0123 Polyadenylate-binding 98.2 2.3E-06 5E-11 96.7 8.0 74 168-242 79-155 (369)
164 PLN02233 ubiquinone biosynthes 98.2 3.5E-06 7.7E-11 90.9 8.9 68 593-660 65-138 (261)
165 KOG0110 RNA-binding protein (R 98.2 2.2E-06 4.9E-11 100.3 7.8 74 165-238 515-596 (725)
166 PF13649 Methyltransf_25: Meth 98.2 1.8E-06 3.9E-11 79.1 5.7 56 605-661 1-61 (101)
167 PRK15451 tRNA cmo(5)U34 methyl 98.2 4.4E-06 9.6E-11 89.3 9.5 61 600-660 55-120 (247)
168 KOG0148 Apoptosis-promoting RN 98.2 3.7E-06 7.9E-11 89.0 8.4 79 164-244 163-242 (321)
169 PF02353 CMAS: Mycolic acid cy 98.2 5E-06 1.1E-10 90.5 9.3 77 585-661 46-124 (273)
170 KOG4212 RNA-binding protein hn 98.2 3.5E-06 7.5E-11 93.7 7.7 73 165-237 43-121 (608)
171 PRK11188 rrmJ 23S rRNA methylt 98.2 1.8E-05 4E-10 82.7 12.8 52 599-661 49-103 (209)
172 PRK07580 Mg-protoporphyrin IX 98.2 6.5E-06 1.4E-10 85.9 9.3 59 600-658 62-121 (230)
173 KOG0144 RNA-binding protein CU 98.2 3.9E-06 8.4E-11 93.5 7.7 76 162-237 31-114 (510)
174 KOG0114 Predicted RNA-binding 98.1 8.7E-06 1.9E-10 75.3 7.9 72 168-240 21-95 (124)
175 PTZ00146 fibrillarin; Provisio 98.1 4.2E-05 9.1E-10 83.7 14.7 63 596-660 127-192 (293)
176 PRK00811 spermidine synthase; 98.1 3.1E-05 6.7E-10 84.7 13.7 63 601-663 76-145 (283)
177 PF01596 Methyltransf_3: O-met 98.1 1.8E-05 3.8E-10 82.8 11.1 68 601-668 45-116 (205)
178 TIGR00438 rrmJ cell division p 98.1 4.7E-05 1E-09 77.8 13.4 61 589-660 20-83 (188)
179 PRK03612 spermidine synthase; 98.1 2E-05 4.3E-10 93.2 12.1 64 600-663 296-368 (521)
180 PRK11873 arsM arsenite S-adeno 98.1 8.6E-06 1.9E-10 87.9 8.3 64 597-660 73-139 (272)
181 PRK10258 biotin biosynthesis p 98.1 2.4E-05 5.1E-10 83.4 11.3 63 593-660 34-96 (251)
182 KOG0146 RNA-binding protein ET 98.1 4.4E-06 9.6E-11 88.1 5.4 79 162-240 282-365 (371)
183 COG2519 GCD14 tRNA(1-methylade 98.1 4.6E-05 1E-09 81.3 13.0 93 568-660 54-157 (256)
184 KOG0121 Nuclear cap-binding pr 98.0 9.4E-06 2E-10 77.6 6.6 73 162-235 33-111 (153)
185 TIGR00740 methyltransferase, p 98.0 1.9E-05 4.1E-10 83.7 9.8 62 600-661 52-118 (239)
186 KOG0109 RNA-binding protein LA 98.0 5.4E-06 1.2E-10 88.5 5.2 71 166-240 3-74 (346)
187 PRK15068 tRNA mo(5)U34 methylt 98.0 2E-05 4.3E-10 87.8 9.1 72 590-661 111-184 (322)
188 KOG1270 Methyltransferases [Co 98.0 8.2E-06 1.8E-10 87.0 5.8 60 602-661 90-155 (282)
189 KOG4208 Nucleolar RNA-binding 98.0 1.6E-05 3.4E-10 81.7 6.9 73 167-239 51-129 (214)
190 PF03848 TehB: Tellurite resis 97.9 3.3E-05 7.1E-10 79.9 9.3 66 593-659 22-87 (192)
191 PLN03075 nicotianamine synthas 97.9 7.9E-05 1.7E-09 81.8 12.5 60 601-660 123-188 (296)
192 PRK01581 speE spermidine synth 97.9 8.5E-05 1.8E-09 83.6 13.0 64 600-663 149-221 (374)
193 TIGR03587 Pse_Me-ase pseudamin 97.9 2.2E-05 4.7E-10 81.9 7.7 57 599-660 41-99 (204)
194 TIGR00417 speE spermidine synt 97.9 0.00015 3.1E-09 78.8 14.3 63 601-663 72-140 (270)
195 PF02390 Methyltransf_4: Putat 97.9 0.0001 2.3E-09 76.4 12.1 119 603-797 19-146 (195)
196 KOG0145 RNA-binding protein EL 97.9 4.5E-05 9.8E-10 80.4 9.3 76 162-237 275-355 (360)
197 KOG0123 Polyadenylate-binding 97.9 1.6E-05 3.4E-10 90.0 6.0 80 163-242 268-351 (369)
198 KOG1271 Methyltransferases [Ge 97.9 2.6E-05 5.6E-10 79.2 6.8 78 583-660 45-129 (227)
199 PLN02366 spermidine synthase 97.9 0.00015 3.2E-09 80.5 13.3 65 600-664 90-160 (308)
200 COG0030 KsgA Dimethyladenosine 97.9 4E-05 8.6E-10 82.6 8.2 78 582-661 11-88 (259)
201 TIGR00452 methyltransferase, p 97.8 7.1E-05 1.5E-09 83.1 10.3 88 574-661 91-183 (314)
202 PRK00050 16S rRNA m(4)C1402 me 97.8 5.3E-05 1.2E-09 83.3 9.1 76 588-665 6-84 (296)
203 TIGR03840 TMPT_Se_Te thiopurin 97.8 4.2E-05 9.1E-10 80.4 7.7 58 600-660 33-105 (213)
204 PRK08317 hypothetical protein; 97.8 7.6E-05 1.6E-09 77.4 9.4 70 590-660 8-80 (241)
205 PRK00216 ubiE ubiquinone/menaq 97.8 6.2E-05 1.3E-09 78.5 8.7 68 593-660 43-114 (239)
206 PLN02589 caffeoyl-CoA O-methyl 97.8 0.00042 9.1E-09 74.6 15.0 83 580-666 62-148 (247)
207 PTZ00098 phosphoethanolamine N 97.8 4.9E-05 1.1E-09 82.2 8.0 65 593-659 44-109 (263)
208 KOG1540 Ubiquinone biosynthesi 97.8 6.6E-05 1.4E-09 79.9 8.1 70 592-661 91-171 (296)
209 PRK11705 cyclopropane fatty ac 97.8 8E-05 1.7E-09 84.9 9.3 70 588-660 154-224 (383)
210 COG4076 Predicted RNA methylas 97.7 4.3E-05 9.4E-10 77.8 5.9 59 603-661 34-92 (252)
211 TIGR03438 probable methyltrans 97.7 8.6E-05 1.9E-09 81.9 8.8 63 600-662 62-128 (301)
212 KOG0124 Polypyrimidine tract-b 97.7 2.8E-05 6.1E-10 85.0 4.7 69 166-235 114-188 (544)
213 PF02384 N6_Mtase: N-6 DNA Met 97.7 4.6E-05 1E-09 83.8 6.5 67 592-658 37-114 (311)
214 PLN02336 phosphoethanolamine N 97.7 6.8E-05 1.5E-09 87.4 8.2 71 585-660 254-325 (475)
215 KOG4206 Spliceosomal protein s 97.7 7.5E-05 1.6E-09 77.8 7.5 78 167-244 11-94 (221)
216 PRK05785 hypothetical protein; 97.7 9.5E-05 2.1E-09 78.3 8.4 52 601-660 51-103 (226)
217 KOG0113 U1 small nuclear ribon 97.7 0.00021 4.6E-09 76.9 10.9 73 163-235 99-176 (335)
218 smart00356 ZnF_C3H1 zinc finge 97.7 1.8E-05 3.9E-10 55.6 1.9 26 81-107 2-27 (27)
219 TIGR02716 C20_methyl_CrtF C-20 97.7 0.00011 2.5E-09 80.7 9.1 68 591-659 139-209 (306)
220 KOG1227 Putative methyltransfe 97.7 5.7E-05 1.2E-09 81.8 6.4 97 555-657 151-253 (351)
221 TIGR01444 fkbM_fam methyltrans 97.7 8.9E-05 1.9E-09 71.7 7.0 56 604-659 1-58 (143)
222 PF08704 GCD14: tRNA methyltra 97.7 0.00013 2.8E-09 78.4 8.8 69 591-659 30-102 (247)
223 PF04059 RRM_2: RNA recognitio 97.7 0.00018 3.9E-09 66.7 8.5 63 167-229 3-72 (97)
224 PRK13255 thiopurine S-methyltr 97.7 0.00011 2.3E-09 77.7 7.8 59 600-661 36-109 (218)
225 PF08241 Methyltransf_11: Meth 97.7 3.8E-05 8.3E-10 67.8 3.8 53 606-661 1-54 (95)
226 PF05401 NodS: Nodulation prot 97.7 0.0001 2.2E-09 76.2 7.3 60 601-662 43-102 (201)
227 KOG0131 Splicing factor 3b, su 97.7 6.9E-05 1.5E-09 75.7 5.8 77 162-238 93-175 (203)
228 COG4122 Predicted O-methyltran 97.6 0.00065 1.4E-08 71.7 13.2 65 600-664 58-127 (219)
229 KOG3191 Predicted N6-DNA-methy 97.6 0.00022 4.8E-09 72.6 9.2 59 602-661 44-105 (209)
230 PF13679 Methyltransf_32: Meth 97.6 0.00047 1E-08 67.6 11.4 58 600-657 24-90 (141)
231 KOG1677 CCCH-type Zn-finger pr 97.6 2.3E-05 5.1E-10 87.2 2.5 41 74-114 168-208 (332)
232 PRK06202 hypothetical protein; 97.6 7.5E-05 1.6E-09 78.8 6.2 58 600-660 59-122 (232)
233 PF10294 Methyltransf_16: Puta 97.6 0.00037 8.1E-09 70.8 10.9 75 585-660 23-108 (173)
234 KOG1457 RNA binding protein (c 97.6 0.00018 4E-09 74.6 8.5 80 167-246 36-124 (284)
235 PRK11088 rrmA 23S rRNA methylt 97.6 0.00015 3.2E-09 78.7 8.4 70 585-660 70-144 (272)
236 PRK04148 hypothetical protein; 97.6 0.00038 8.2E-09 68.1 10.3 65 589-660 4-69 (134)
237 KOG1499 Protein arginine N-met 97.6 9.6E-05 2.1E-09 81.9 6.9 62 599-661 58-121 (346)
238 PLN02490 MPBQ/MSBQ methyltrans 97.6 0.0002 4.3E-09 80.3 9.2 70 588-660 99-171 (340)
239 PLN02336 phosphoethanolamine N 97.6 0.00015 3.3E-09 84.5 8.5 65 593-659 29-93 (475)
240 KOG4205 RNA-binding protein mu 97.6 5.4E-05 1.2E-09 83.5 4.3 78 165-243 97-179 (311)
241 smart00828 PKS_MT Methyltransf 97.6 0.00018 3.9E-09 75.1 7.6 56 604-659 2-60 (224)
242 PRK06922 hypothetical protein; 97.5 0.00024 5.2E-09 85.0 9.1 61 599-660 416-478 (677)
243 TIGR01934 MenG_MenH_UbiE ubiqu 97.5 0.00029 6.2E-09 72.7 8.4 66 593-660 31-99 (223)
244 PF07021 MetW: Methionine bios 97.5 0.00024 5.3E-09 73.2 7.5 65 591-664 5-70 (193)
245 TIGR02072 BioC biotin biosynth 97.5 0.00035 7.6E-09 72.7 8.5 72 584-660 18-91 (240)
246 KOG0109 RNA-binding protein LA 97.5 0.00012 2.6E-09 78.5 4.9 74 163-240 76-150 (346)
247 COG0220 Predicted S-adenosylme 97.5 0.0021 4.5E-08 68.4 14.1 118 603-796 50-177 (227)
248 TIGR02987 met_A_Alw26 type II 97.5 0.00033 7E-09 83.0 9.0 77 581-657 8-97 (524)
249 COG2521 Predicted archaeal met 97.5 0.00016 3.5E-09 76.1 5.5 70 596-665 129-201 (287)
250 KOG4205 RNA-binding protein mu 97.4 8.8E-05 1.9E-09 81.9 3.7 80 164-244 5-89 (311)
251 COG4106 Tam Trans-aconitate me 97.4 0.00026 5.6E-09 73.9 6.8 61 596-661 25-87 (257)
252 KOG0130 RNA-binding protein RB 97.4 0.00028 6E-09 68.3 6.1 74 165-238 72-150 (170)
253 TIGR00478 tly hemolysin TlyA f 97.4 0.00024 5.3E-09 75.5 6.4 60 584-643 58-119 (228)
254 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00023 5E-09 77.0 5.9 74 585-660 14-87 (262)
255 KOG0533 RRM motif-containing p 97.4 0.00056 1.2E-08 73.1 8.3 77 162-239 80-161 (243)
256 KOG4212 RNA-binding protein hn 97.3 0.00038 8.2E-09 78.0 6.6 73 162-236 533-607 (608)
257 TIGR02081 metW methionine bios 97.3 0.0006 1.3E-08 70.1 7.0 54 600-660 12-66 (194)
258 KOG0226 RNA-binding proteins [ 97.2 0.00037 8E-09 73.7 5.3 74 162-235 187-265 (290)
259 PF02005 TRM: N2,N2-dimethylgu 97.2 0.00081 1.8E-08 76.6 8.5 89 575-663 18-116 (377)
260 KOG1541 Predicted protein carb 97.2 0.00036 7.7E-09 73.0 5.0 50 592-641 39-90 (270)
261 PF08242 Methyltransf_12: Meth 97.2 2.6E-05 5.7E-10 70.9 -3.3 53 606-658 1-55 (99)
262 KOG1677 CCCH-type Zn-finger pr 97.2 0.00014 3.1E-09 80.9 1.8 42 73-114 122-164 (332)
263 KOG0132 RNA polymerase II C-te 97.2 0.00068 1.5E-08 80.6 7.4 71 167-238 423-493 (894)
264 PF05185 PRMT5: PRMT5 arginine 97.2 0.001 2.2E-08 77.4 8.4 60 602-661 187-253 (448)
265 PF13489 Methyltransf_23: Meth 97.2 0.00086 1.9E-08 65.3 6.7 40 599-638 20-59 (161)
266 KOG2671 Putative RNA methylase 97.2 0.00016 3.4E-09 79.7 1.5 45 594-638 201-245 (421)
267 PLN02823 spermine synthase 97.1 0.0032 6.9E-08 70.8 11.8 63 601-663 103-171 (336)
268 KOG0146 RNA-binding protein ET 97.1 0.00088 1.9E-08 71.2 6.7 74 165-238 19-99 (371)
269 KOG4661 Hsp27-ERE-TATA-binding 97.1 0.0011 2.4E-08 76.2 7.6 75 165-239 405-484 (940)
270 smart00138 MeTrc Methyltransfe 97.1 0.0013 2.8E-08 71.4 7.9 71 572-643 67-152 (264)
271 COG4976 Predicted methyltransf 97.1 0.00033 7.1E-09 73.6 3.0 44 598-641 122-165 (287)
272 KOG0106 Alternative splicing f 97.1 0.00045 9.8E-09 72.4 3.8 71 166-239 2-72 (216)
273 KOG0110 RNA-binding protein (R 97.0 0.00063 1.4E-08 80.4 4.8 75 164-238 612-691 (725)
274 PRK13256 thiopurine S-methyltr 97.0 0.0019 4.1E-08 68.7 7.5 63 599-661 41-115 (226)
275 KOG4211 Splicing factor hnRNP- 96.9 0.0027 5.9E-08 72.6 8.3 77 163-240 8-86 (510)
276 PF05724 TPMT: Thiopurine S-me 96.9 0.0014 3E-08 69.3 5.6 64 598-661 34-109 (218)
277 KOG1500 Protein arginine N-met 96.8 0.0022 4.9E-08 70.5 6.9 61 600-661 176-238 (517)
278 KOG2078 tRNA modification enzy 96.8 0.00073 1.6E-08 76.4 3.3 93 566-663 218-313 (495)
279 KOG0116 RasGAP SH3 binding pro 96.8 0.0018 4E-08 74.2 6.5 78 165-243 288-370 (419)
280 PRK01544 bifunctional N5-gluta 96.7 0.017 3.8E-07 68.3 14.1 120 601-797 347-475 (506)
281 KOG0820 Ribosomal RNA adenine 96.7 0.0044 9.5E-08 66.9 7.8 71 590-660 47-118 (315)
282 PF08123 DOT1: Histone methyla 96.7 0.0045 9.7E-08 64.9 7.9 67 593-659 34-111 (205)
283 PF01564 Spermine_synth: Sperm 96.6 0.02 4.4E-07 61.6 12.1 64 601-664 76-145 (246)
284 KOG0151 Predicted splicing reg 96.6 0.0045 9.8E-08 73.2 7.2 76 165-240 174-257 (877)
285 PF01555 N6_N4_Mtase: DNA meth 96.5 0.0053 1.2E-07 63.2 7.0 42 600-641 190-231 (231)
286 KOG1548 Transcription elongati 96.5 0.0043 9.4E-08 68.3 6.3 74 165-238 134-219 (382)
287 PF11599 AviRa: RRNA methyltra 96.5 0.0063 1.4E-07 63.7 7.2 64 583-646 33-100 (246)
288 KOG2899 Predicted methyltransf 96.5 0.0033 7.1E-08 66.8 4.9 45 601-645 58-104 (288)
289 KOG1122 tRNA and rRNA cytosine 96.4 0.011 2.4E-07 67.1 8.8 64 596-659 236-302 (460)
290 KOG2185 Predicted RNA-processi 96.4 0.0018 3.9E-08 72.3 2.6 34 79-113 136-173 (486)
291 KOG0124 Polypyrimidine tract-b 96.4 0.0057 1.2E-07 67.5 6.1 73 166-238 211-288 (544)
292 COG3897 Predicted methyltransf 96.4 0.0033 7.2E-08 65.0 4.0 71 587-658 65-136 (218)
293 KOG1663 O-methyltransferase [S 96.3 0.023 5E-07 60.2 10.0 69 601-669 73-145 (237)
294 KOG3010 Methyltransferase [Gen 96.3 0.0036 7.8E-08 66.5 4.0 42 600-641 31-73 (261)
295 KOG1661 Protein-L-isoaspartate 96.3 0.0074 1.6E-07 63.0 6.0 73 586-658 65-153 (237)
296 TIGR00006 S-adenosyl-methyltra 96.2 0.028 6.1E-07 62.3 10.3 76 588-664 7-84 (305)
297 cd00315 Cyt_C5_DNA_methylase C 96.1 0.0056 1.2E-07 66.8 4.7 51 604-660 2-53 (275)
298 KOG2202 U2 snRNP splicing fact 96.1 0.0038 8.3E-08 66.4 3.1 116 84-237 16-145 (260)
299 PF11608 Limkain-b1: Limkain b 96.1 0.025 5.5E-07 51.1 7.7 67 167-237 4-74 (90)
300 PRK11524 putative methyltransf 96.1 0.014 3E-07 64.0 7.5 55 589-644 197-251 (284)
301 KOG2915 tRNA(1-methyladenosine 96.1 0.013 2.9E-07 63.3 7.1 92 567-658 65-166 (314)
302 COG1867 TRM1 N2,N2-dimethylgua 96.0 0.047 1E-06 61.5 10.8 63 602-664 53-117 (380)
303 COG0421 SpeE Spermidine syntha 95.9 0.1 2.2E-06 57.5 13.3 62 603-664 78-145 (282)
304 KOG0106 Alternative splicing f 95.9 0.0052 1.1E-07 64.6 2.8 68 165-235 99-166 (216)
305 PF08003 Methyltransf_9: Prote 95.8 0.029 6.4E-07 61.9 8.4 58 593-650 107-165 (315)
306 PF02527 GidB: rRNA small subu 95.8 0.057 1.2E-06 55.8 10.0 57 604-660 51-109 (184)
307 KOG4211 Splicing factor hnRNP- 95.7 0.016 3.5E-07 66.5 6.1 72 165-237 103-179 (510)
308 COG5063 CTH1 CCCH-type Zn-fing 95.7 0.0058 1.3E-07 66.2 2.5 43 75-117 266-308 (351)
309 PRK13699 putative methylase; P 95.7 0.029 6.3E-07 59.7 7.7 46 600-645 162-207 (227)
310 KOG4209 Splicing factor RNPS1, 95.6 0.015 3.2E-07 62.1 5.0 72 165-237 101-177 (231)
311 KOG1457 RNA binding protein (c 95.6 0.012 2.7E-07 61.5 4.2 62 166-227 211-273 (284)
312 KOG0415 Predicted peptidyl pro 95.5 0.046 9.9E-07 60.5 8.1 78 162-239 236-318 (479)
313 KOG0120 Splicing factor U2AF, 95.4 0.011 2.3E-07 69.1 3.5 78 162-239 286-368 (500)
314 COG0357 GidB Predicted S-adeno 95.4 0.042 9.2E-07 58.1 7.6 60 602-661 68-129 (215)
315 PF03291 Pox_MCEL: mRNA cappin 95.4 0.035 7.6E-07 62.4 7.1 59 601-659 62-131 (331)
316 PF04816 DUF633: Family of unk 95.3 0.044 9.5E-07 57.6 7.3 57 605-661 1-60 (205)
317 PF00145 DNA_methylase: C-5 cy 95.2 0.049 1.1E-06 59.5 7.6 54 604-664 2-56 (335)
318 PF04445 SAM_MT: Putative SAM- 95.1 0.037 8.1E-07 59.2 5.9 70 593-662 65-145 (234)
319 KOG4300 Predicted methyltransf 94.9 0.044 9.5E-07 57.4 5.7 75 587-661 62-138 (252)
320 COG5175 MOT2 Transcriptional r 94.7 0.039 8.4E-07 60.6 5.0 71 168-238 117-201 (480)
321 PF05971 Methyltransf_10: Prot 94.5 0.2 4.4E-06 55.5 10.0 84 572-656 69-161 (299)
322 PHA01634 hypothetical protein 94.5 0.069 1.5E-06 51.9 5.5 48 601-648 28-76 (156)
323 PF08777 RRM_3: RNA binding mo 94.4 0.11 2.4E-06 48.9 6.7 58 167-225 3-60 (105)
324 PF12147 Methyltransf_20: Puta 94.3 0.15 3.2E-06 56.1 8.3 62 600-661 134-200 (311)
325 PF00891 Methyltransf_2: O-met 94.3 0.088 1.9E-06 55.9 6.6 61 592-659 91-153 (241)
326 KOG4307 RNA binding protein RB 94.3 0.078 1.7E-06 63.1 6.4 74 162-235 863-942 (944)
327 PF01728 FtsJ: FtsJ-like methy 94.2 0.053 1.1E-06 55.0 4.4 63 585-658 5-72 (181)
328 COG3963 Phospholipid N-methylt 94.2 0.14 3E-06 52.1 7.1 71 583-662 34-107 (194)
329 KOG4454 RNA binding protein (R 94.0 0.029 6.2E-07 58.7 2.1 69 166-235 10-82 (267)
330 TIGR03439 methyl_EasF probable 94.0 0.26 5.6E-06 55.3 9.6 88 577-665 52-148 (319)
331 KOG1995 Conserved Zn-finger pr 93.7 0.098 2.1E-06 58.3 5.6 80 162-241 63-155 (351)
332 KOG2360 Proliferation-associat 93.6 0.13 2.9E-06 58.1 6.3 66 595-660 207-275 (413)
333 PF05219 DREV: DREV methyltran 93.5 0.18 3.9E-06 54.7 7.0 60 581-640 73-133 (265)
334 KOG1365 RNA-binding protein Fu 93.5 0.078 1.7E-06 59.3 4.3 70 168-237 283-359 (508)
335 KOG4849 mRNA cleavage factor I 93.4 0.076 1.6E-06 58.7 4.0 70 165-234 80-156 (498)
336 PF14608 zf-CCCH_2: Zinc finge 93.4 0.05 1.1E-06 35.7 1.6 19 85-106 1-19 (19)
337 KOG1253 tRNA methyltransferase 93.3 0.11 2.4E-06 60.4 5.4 64 600-663 108-175 (525)
338 PF09243 Rsm22: Mitochondrial 92.7 0.22 4.7E-06 54.6 6.3 65 580-644 12-79 (274)
339 TIGR00675 dcm DNA-methyltransf 92.6 0.17 3.6E-06 56.5 5.4 52 605-662 1-53 (315)
340 COG0275 Predicted S-adenosylme 92.6 0.69 1.5E-05 51.2 9.8 77 588-665 10-89 (314)
341 KOG4660 Protein Mei2, essentia 92.5 0.12 2.6E-06 60.4 4.1 66 167-233 77-143 (549)
342 KOG2361 Predicted methyltransf 92.4 0.092 2E-06 56.2 2.9 84 569-657 41-130 (264)
343 KOG2416 Acinus (induces apopto 92.3 0.12 2.7E-06 60.5 3.9 72 166-237 445-519 (718)
344 KOG1548 Transcription elongati 92.0 0.37 8.1E-06 53.6 7.0 72 165-237 265-349 (382)
345 KOG3115 Methyltransferase-like 91.8 0.23 5E-06 52.0 4.8 68 601-668 60-136 (249)
346 KOG1501 Arginine N-methyltrans 91.6 0.46 9.9E-06 54.6 7.3 53 603-655 68-122 (636)
347 KOG2193 IGF-II mRNA-binding pr 91.4 0.17 3.7E-06 57.3 3.7 73 167-240 3-76 (584)
348 KOG4058 Uncharacterized conser 91.4 0.24 5.1E-06 49.5 4.2 74 581-658 56-131 (199)
349 PF01861 DUF43: Protein of unk 91.3 0.4 8.7E-06 51.5 6.2 61 601-663 44-106 (243)
350 KOG1365 RNA-binding protein Fu 91.3 0.36 7.8E-06 54.2 6.0 59 166-224 162-228 (508)
351 KOG1975 mRNA cap methyltransfe 91.2 0.41 8.8E-06 53.3 6.2 61 600-660 116-183 (389)
352 COG0500 SmtA SAM-dependent met 91.2 0.69 1.5E-05 41.5 6.9 55 605-660 52-109 (257)
353 PRK11760 putative 23S rRNA C24 91.2 0.61 1.3E-05 52.7 7.7 71 583-660 186-263 (357)
354 COG0286 HsdM Type I restrictio 91.1 0.42 9.2E-06 56.6 6.8 66 592-657 177-249 (489)
355 KOG1040 Polyadenylation factor 90.8 0.34 7.3E-06 54.3 5.2 43 72-116 64-108 (325)
356 PF13578 Methyltransf_24: Meth 90.2 0.34 7.3E-06 44.6 4.0 59 606-665 1-65 (106)
357 COG1568 Predicted methyltransf 90.1 0.37 8E-06 52.6 4.6 63 602-665 153-217 (354)
358 COG5063 CTH1 CCCH-type Zn-fing 90.0 0.29 6.3E-06 53.5 3.8 38 75-112 220-265 (351)
359 COG2384 Predicted SAM-dependen 89.8 0.74 1.6E-05 48.9 6.5 58 601-658 16-76 (226)
360 PF01795 Methyltransf_5: MraW 89.8 0.41 8.9E-06 53.4 4.9 75 588-663 7-83 (310)
361 KOG1763 Uncharacterized conser 89.8 0.097 2.1E-06 56.8 -0.0 33 79-112 88-120 (343)
362 PF07091 FmrO: Ribosomal RNA m 89.6 1 2.3E-05 48.7 7.6 69 586-657 92-162 (251)
363 COG0293 FtsJ 23S rRNA methylas 88.8 0.67 1.5E-05 48.8 5.3 66 584-660 28-96 (205)
364 PF03880 DbpA: DbpA RNA bindin 88.6 0.61 1.3E-05 41.0 4.2 62 175-237 11-74 (74)
365 KOG3152 TBP-binding protein, a 88.4 0.43 9.4E-06 51.2 3.7 64 168-231 77-157 (278)
366 COG4262 Predicted spermidine s 88.4 2.7 5.9E-05 47.7 9.9 65 600-664 288-361 (508)
367 COG0270 Dcm Site-specific DNA 88.4 0.8 1.7E-05 51.4 6.0 56 603-663 4-60 (328)
368 COG5252 Uncharacterized conser 88.3 0.13 2.8E-06 54.2 -0.3 33 79-112 81-113 (299)
369 PF01739 CheR: CheR methyltran 88.3 1.2 2.6E-05 46.5 6.8 61 581-641 7-82 (196)
370 PRK00536 speE spermidine synth 88.3 7.7 0.00017 42.5 13.2 44 600-643 71-114 (262)
371 PF03467 Smg4_UPF3: Smg-4/UPF3 88.2 0.31 6.8E-06 50.0 2.4 68 162-229 4-82 (176)
372 COG0863 DNA modification methy 88.1 1.4 3.1E-05 47.8 7.6 49 598-646 219-267 (302)
373 KOG4307 RNA binding protein RB 88.1 0.58 1.3E-05 56.0 4.7 67 167-234 4-71 (944)
374 COG1189 Predicted rRNA methyla 88.1 0.85 1.8E-05 49.0 5.6 55 583-637 61-116 (245)
375 KOG4210 Nuclear localization s 87.5 0.47 1E-05 52.4 3.4 78 165-243 184-267 (285)
376 KOG4206 Spliceosomal protein s 86.7 2 4.4E-05 45.5 7.3 75 162-237 143-219 (221)
377 PF02086 MethyltransfD12: D12 86.5 0.74 1.6E-05 49.0 4.1 53 589-641 8-60 (260)
378 PRK10458 DNA cytosine methylas 86.1 1.8 3.9E-05 51.1 7.4 58 602-661 88-146 (467)
379 KOG2314 Translation initiation 85.9 1.2 2.6E-05 52.5 5.6 68 168-236 61-140 (698)
380 KOG2591 c-Mpl binding protein, 85.2 1.5 3.2E-05 51.6 5.9 67 168-235 178-247 (684)
381 COG5152 Uncharacterized conser 84.7 0.34 7.3E-06 50.1 0.5 32 81-112 139-170 (259)
382 KOG2198 tRNA cytosine-5-methyl 84.7 4.9 0.00011 45.8 9.6 63 597-659 151-219 (375)
383 KOG1190 Polypyrimidine tract-b 84.4 1.9 4.1E-05 49.1 6.2 72 167-238 416-489 (492)
384 KOG2651 rRNA adenine N-6-methy 84.4 2.4 5.1E-05 48.3 6.9 59 580-641 135-194 (476)
385 PF01269 Fibrillarin: Fibrilla 83.9 8 0.00017 41.4 10.2 63 595-659 67-132 (229)
386 PF07279 DUF1442: Protein of u 83.6 14 0.0003 39.4 11.8 66 600-665 40-113 (218)
387 PF05172 Nup35_RRM: Nup53/35/4 83.0 3.6 7.7E-05 38.6 6.5 67 165-233 6-84 (100)
388 PF06080 DUF938: Protein of un 82.6 3.2 7E-05 43.7 6.7 63 588-651 13-77 (204)
389 KOG1595 CCCH-type Zn-finger pr 82.4 0.6 1.3E-05 54.7 1.4 26 81-107 234-259 (528)
390 PF07757 AdoMet_MTase: Predict 81.9 1.6 3.5E-05 41.5 3.7 51 585-635 42-92 (112)
391 PF03059 NAS: Nicotianamine sy 81.8 5.3 0.00012 44.1 8.3 61 603-663 122-188 (276)
392 KOG1595 CCCH-type Zn-finger pr 81.2 0.82 1.8E-05 53.7 1.9 35 79-117 267-301 (528)
393 KOG2940 Predicted methyltransf 81.0 2.5 5.5E-05 45.2 5.2 56 602-659 73-129 (325)
394 KOG0147 Transcriptional coacti 80.9 3.6 7.8E-05 48.5 6.8 59 179-237 467-525 (549)
395 PF05891 Methyltransf_PK: AdoM 80.9 2.6 5.6E-05 44.8 5.3 64 601-664 55-119 (218)
396 KOG4660 Protein Mei2, essentia 80.6 2.1 4.5E-05 50.5 4.8 64 166-229 389-458 (549)
397 KOG1190 Polypyrimidine tract-b 80.4 5.5 0.00012 45.6 7.8 71 167-238 299-371 (492)
398 PRK10611 chemotaxis methyltran 80.1 5.3 0.00011 44.3 7.6 66 572-641 90-165 (287)
399 KOG0821 Predicted ribosomal RN 78.2 13 0.00027 39.9 9.1 149 581-801 30-184 (326)
400 COG2961 ComJ Protein involved 78.0 13 0.00029 40.4 9.4 76 584-665 75-150 (279)
401 KOG2494 C3H1-type Zn-finger pr 77.9 0.75 1.6E-05 51.0 0.2 25 83-108 37-62 (331)
402 KOG0105 Alternative splicing f 77.7 5.8 0.00012 41.1 6.4 63 164-229 114-177 (241)
403 KOG0120 Splicing factor U2AF, 77.7 4.5 9.7E-05 47.9 6.4 34 202-235 454-487 (500)
404 KOG3987 Uncharacterized conser 77.2 0.75 1.6E-05 48.4 -0.0 41 601-641 112-152 (288)
405 KOG1456 Heterogeneous nuclear 77.1 8.6 0.00019 43.6 8.0 76 166-242 123-201 (494)
406 KOG0129 Predicted RNA-binding 77.1 4.4 9.5E-05 47.6 6.0 59 163-221 368-432 (520)
407 COG1352 CheR Methylase of chem 76.0 6.9 0.00015 43.0 6.9 70 571-641 64-147 (268)
408 KOG0129 Predicted RNA-binding 75.3 5.2 0.00011 47.0 6.0 67 165-234 259-335 (520)
409 KOG0024 Sorbitol dehydrogenase 74.6 33 0.00072 38.8 11.7 72 593-668 161-236 (354)
410 KOG0128 RNA-binding protein SA 73.8 2.5 5.5E-05 52.1 3.1 75 165-239 736-814 (881)
411 PLN03209 translocon at the inn 72.7 37 0.0008 41.3 12.5 62 598-660 76-149 (576)
412 PF03141 Methyltransf_29: Puta 72.0 8.8 0.00019 45.4 6.9 56 586-641 98-160 (506)
413 KOG1456 Heterogeneous nuclear 71.9 7.8 0.00017 43.9 6.1 64 167-230 408-475 (494)
414 PF04378 RsmJ: Ribosomal RNA s 71.0 6.7 0.00015 42.5 5.3 59 606-666 62-120 (245)
415 PF07576 BRAP2: BRCA1-associat 69.5 23 0.00051 33.8 8.0 64 166-229 13-81 (110)
416 KOG1039 Predicted E3 ubiquitin 69.5 1.7 3.7E-05 49.2 0.4 24 84-108 9-32 (344)
417 PRK01747 mnmC bifunctional tRN 67.3 34 0.00074 42.1 11.0 45 750-794 167-216 (662)
418 PF10309 DUF2414: Protein of u 65.0 25 0.00055 30.3 6.5 55 166-222 6-62 (62)
419 PLN02232 ubiquinone biosynthes 64.8 6.1 0.00013 39.5 3.3 35 627-661 1-38 (160)
420 KOG4410 5-formyltetrahydrofola 64.5 12 0.00025 41.1 5.4 45 167-211 332-376 (396)
421 KOG0804 Cytoplasmic Zn-finger 63.0 15 0.00033 42.7 6.2 65 165-229 74-142 (493)
422 KOG2920 Predicted methyltransf 62.7 5 0.00011 44.2 2.3 38 600-637 115-153 (282)
423 PRK11524 putative methyltransf 62.7 17 0.00036 40.0 6.5 40 751-790 29-86 (284)
424 PF04672 Methyltransf_19: S-ad 62.4 9.9 0.00021 41.8 4.5 71 591-661 57-133 (267)
425 PF04847 Calcipressin: Calcipr 61.4 12 0.00025 39.0 4.6 58 179-239 9-70 (184)
426 PF00072 Response_reg: Respons 59.6 60 0.0013 29.0 8.6 39 626-665 1-39 (112)
427 PF11767 SET_assoc: Histone ly 59.4 30 0.00064 30.2 6.0 54 176-233 11-64 (66)
428 KOG3178 Hydroxyindole-O-methyl 58.3 13 0.00028 42.2 4.6 78 577-658 152-230 (342)
429 PLN02540 methylenetetrahydrofo 57.9 25 0.00055 42.6 7.2 79 578-658 5-97 (565)
430 KOG1855 Predicted RNA-binding 57.4 12 0.00026 43.2 4.2 64 165-228 231-313 (484)
431 KOG2352 Predicted spermine/spe 57.3 15 0.00032 43.4 5.0 66 602-667 296-363 (482)
432 PF14605 Nup35_RRM_2: Nup53/35 57.2 26 0.00056 29.0 5.1 51 167-219 3-53 (53)
433 KOG1813 Predicted E3 ubiquitin 57.0 3.7 8.1E-05 45.2 0.2 31 80-110 183-213 (313)
434 KOG3924 Putative protein methy 56.7 12 0.00026 43.1 4.1 54 593-646 184-239 (419)
435 KOG0128 RNA-binding protein SA 56.4 2 4.4E-05 52.8 -2.1 73 165-237 667-744 (881)
436 PF05050 Methyltransf_21: Meth 55.7 25 0.00054 34.1 5.8 49 607-655 1-58 (167)
437 PF08675 RNA_bind: RNA binding 55.3 28 0.00061 31.9 5.4 53 168-223 11-63 (87)
438 KOG2793 Putative N2,N2-dimethy 54.5 16 0.00034 39.8 4.4 48 601-648 86-133 (248)
439 PF10650 zf-C3H1: Putative zin 54.5 7.2 0.00016 27.1 1.2 20 85-105 2-21 (23)
440 PRK11908 NAD-dependent epimera 53.9 75 0.0016 35.3 9.9 49 604-659 3-56 (347)
441 KOG1098 Putative SAM-dependent 53.9 18 0.00039 43.8 5.1 64 584-658 27-93 (780)
442 PRK15181 Vi polysaccharide bio 53.5 33 0.00071 38.4 7.0 57 603-660 16-80 (348)
443 PLN00141 Tic62-NAD(P)-related 53.2 69 0.0015 33.9 9.1 53 602-660 17-73 (251)
444 COG3129 Predicted SAM-dependen 52.7 25 0.00054 38.1 5.3 88 568-655 39-136 (292)
445 PF08952 DUF1866: Domain of un 51.8 23 0.0005 35.5 4.7 37 203-240 71-107 (146)
446 KOG4589 Cell division protein 50.7 18 0.00039 38.0 3.8 52 599-661 67-122 (232)
447 KOG1492 C3H1-type Zn-finger pr 48.9 7.2 0.00016 41.1 0.7 23 85-107 208-230 (377)
448 PRK12429 3-hydroxybutyrate deh 48.9 2.1E+02 0.0046 29.7 11.9 56 603-660 5-64 (258)
449 KOG1269 SAM-dependent methyltr 48.8 15 0.00032 42.2 3.3 96 561-657 70-168 (364)
450 PLN00016 RNA-binding protein; 48.6 42 0.00092 38.0 7.0 58 603-660 53-121 (378)
451 COG1889 NOP1 Fibrillarin-like 48.3 47 0.001 35.4 6.5 64 595-660 70-135 (231)
452 PF11899 DUF3419: Protein of u 47.7 32 0.0007 39.7 5.8 48 595-642 29-76 (380)
453 COG0338 Dam Site-specific DNA 47.3 47 0.001 36.7 6.7 44 751-794 176-238 (274)
454 KOG2333 Uncharacterized conser 46.8 14 0.0003 43.5 2.6 49 84-132 115-177 (614)
455 COG1064 AdhP Zn-dependent alco 46.4 33 0.00073 39.0 5.5 45 597-641 162-208 (339)
456 TIGR00497 hsdM type I restrict 45.2 45 0.00098 39.7 6.7 48 601-648 217-270 (501)
457 PF06962 rRNA_methylase: Putat 45.1 42 0.00092 33.5 5.4 36 625-660 1-37 (140)
458 COG1743 Adenine-specific DNA m 43.6 24 0.00052 43.9 4.0 47 599-645 88-134 (875)
459 KOG2202 U2 snRNP splicing fact 43.5 10 0.00023 41.1 0.9 31 76-107 145-175 (260)
460 PF07942 N2227: N2227-like pro 43.1 56 0.0012 36.1 6.5 45 601-647 56-100 (270)
461 KOG1996 mRNA splicing factor [ 42.6 20 0.00044 39.5 3.0 58 179-236 300-363 (378)
462 PLN02650 dihydroflavonol-4-red 41.9 1E+02 0.0022 34.3 8.6 56 604-660 7-67 (351)
463 cd08283 FDH_like_1 Glutathione 41.7 52 0.0011 37.4 6.3 48 595-642 178-228 (386)
464 PRK05398 formyl-coenzyme A tra 41.0 42 0.0009 39.2 5.4 32 600-631 5-38 (416)
465 PF13460 NAD_binding_10: NADH( 40.8 1.4E+02 0.0029 29.6 8.5 45 608-661 3-51 (183)
466 KOG2068 MOT2 transcription fac 40.0 13 0.00028 41.7 1.0 74 167-240 79-163 (327)
467 PF02636 Methyltransf_28: Puta 40.0 36 0.00079 36.6 4.5 44 602-645 19-72 (252)
468 KOG2333 Uncharacterized conser 39.8 12 0.00026 43.9 0.8 28 82-109 75-104 (614)
469 TIGR03253 oxalate_frc formyl-C 39.4 45 0.00098 38.8 5.4 31 601-631 5-37 (415)
470 CHL00194 ycf39 Ycf39; Provisio 39.3 1.8E+02 0.0039 32.0 9.9 46 608-660 5-54 (317)
471 PF02254 TrkA_N: TrkA-N domain 39.2 47 0.001 30.6 4.6 46 609-661 3-52 (116)
472 PF02714 DUF221: Domain of unk 39.1 33 0.00072 38.0 4.1 31 205-237 1-31 (325)
473 PF03721 UDPG_MGDP_dh_N: UDP-g 39.0 27 0.00059 36.1 3.1 49 611-666 7-59 (185)
474 KOG1295 Nonsense-mediated deca 38.4 23 0.00051 40.5 2.7 62 166-227 8-77 (376)
475 PLN02657 3,8-divinyl protochlo 36.9 2.3E+02 0.005 32.5 10.6 58 601-660 59-122 (390)
476 PRK10675 UDP-galactose-4-epime 36.6 1.8E+02 0.004 31.8 9.5 52 609-660 6-61 (338)
477 PF06564 YhjQ: YhjQ protein; 36.5 2E+02 0.0043 31.4 9.3 39 750-791 118-156 (243)
478 KOG1709 Guanidinoacetate methy 36.0 1.2E+02 0.0027 32.7 7.3 69 600-669 100-169 (271)
479 PRK03525 crotonobetainyl-CoA:c 35.2 48 0.001 38.6 4.7 32 600-631 12-45 (405)
480 COG5084 YTH1 Cleavage and poly 35.2 73 0.0016 35.5 5.8 31 80-111 101-131 (285)
481 KOG2253 U1 snRNP complex, subu 33.6 28 0.0006 42.4 2.4 70 162-235 37-106 (668)
482 PF05148 Methyltransf_8: Hypot 33.5 57 0.0012 34.9 4.5 33 600-633 71-103 (219)
483 KOG1040 Polyadenylation factor 33.3 23 0.0005 40.0 1.6 27 82-108 104-130 (325)
484 PF05575 V_cholerae_RfbT: Vibr 32.8 30 0.00064 35.5 2.2 56 599-655 77-134 (286)
485 PRK11430 putative CoA-transfer 32.2 64 0.0014 37.2 5.0 32 600-631 10-43 (381)
486 KOG3201 Uncharacterized conser 32.2 31 0.00068 35.5 2.2 60 587-646 15-77 (201)
487 COG1062 AdhC Zn-dependent alco 31.7 1E+02 0.0022 35.4 6.2 58 593-656 177-237 (366)
488 PRK06035 3-hydroxyacyl-CoA deh 31.6 4.2E+02 0.0092 28.9 11.2 35 611-645 10-48 (291)
489 KOG0112 Large RNA-binding prot 31.4 54 0.0012 41.3 4.4 72 167-239 457-530 (975)
490 PF05206 TRM13: Methyltransfer 31.3 82 0.0018 34.6 5.4 45 589-633 6-57 (259)
491 PLN02214 cinnamoyl-CoA reducta 31.3 5.1E+02 0.011 28.9 12.0 58 601-660 9-71 (342)
492 KOG4285 Mitotic phosphoprotein 31.1 1.4E+02 0.0031 33.4 7.1 68 165-235 197-265 (350)
493 PRK10046 dpiA two-component re 30.8 3.9E+02 0.0085 27.7 10.3 43 750-794 51-97 (225)
494 TIGR03018 pepcterm_TyrKin exop 30.4 6.2E+02 0.014 26.1 13.8 44 750-796 149-192 (207)
495 PHA02518 ParA-like protein; Pr 30.0 1.7E+02 0.0037 29.7 7.4 26 610-635 10-41 (211)
496 COG0677 WecC UDP-N-acetyl-D-ma 29.9 37 0.00081 39.4 2.6 49 611-666 16-68 (436)
497 PF15603 Imm45: Immunity prote 29.8 89 0.0019 28.5 4.5 41 393-435 37-78 (82)
498 PLN02896 cinnamyl-alcohol dehy 29.8 3.5E+02 0.0075 30.1 10.4 56 602-660 10-69 (353)
499 PF04989 CmcI: Cephalosporin h 29.6 39 0.00085 35.8 2.5 58 602-660 33-96 (206)
500 PF01234 NNMT_PNMT_TEMT: NNMT/ 29.5 31 0.00067 37.8 1.8 45 600-644 55-100 (256)
No 1
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-86 Score=740.94 Aligned_cols=505 Identities=40% Similarity=0.587 Sum_probs=418.5
Q ss_pred EEEeCCCcccCHHHHHHHhhhccceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCccccC
Q 002990 168 KCLVHLPRKWHSDNLKKFLADHGILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNI 246 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~~k~~ 246 (860)
..+.++|..+....+++-+...........+ .....+++++|++++.+.+|+..++|..|+|..++|..+......+.+
T Consensus 28 ~~~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~~~~ 107 (534)
T KOG2187|consen 28 ISIEMIPTFIGQKQLNKVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGSLRR 107 (534)
T ss_pred cceeccCchhhhhHHHhhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccccccc
Confidence 3456667777777777666655333333323 334589999999999999999999999999999998777554333321
Q ss_pred CCcccccCccccccccCCCchhhhhcccCCCCCCCCCCCCCCCCCCCCccccceeccCCcccCCChHHHHHHHHHHHHHH
Q 002990 247 KSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQM 326 (860)
Q Consensus 247 k~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~Pl~hl~Ye~QLe~K~~~v~~~ 326 (860)
+. .. +| ..+....+.++++|+|||.++|.+||+.|++...++
T Consensus 108 ~~--------~~------~~------------------------~~~~~~~r~~~~~Vtpl~~~Sy~~qL~lk~~~~~~v 149 (534)
T KOG2187|consen 108 RK--------SQ------PG------------------------PTEPPQQRTARDVVTPLEYLSYGEQLELKQLSQEAV 149 (534)
T ss_pred cc--------cC------CC------------------------cCccccchhhhhhcceeeeeccccchhhhhccHHHH
Confidence 11 00 00 013455677899999999999999999999999999
Q ss_pred HHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEEEeeecCCcc-eEeeeecccCCCceee
Q 002990 327 LKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAV 405 (860)
Q Consensus 327 L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~vg~~~~g~~-~vGF~~g~~~~g~~~V 405 (860)
|+++.+.+...... .-.|+..+ +.-..|.|++|+|||.++||||||+|+||...+|+. ++||++|.|..|.+.+
T Consensus 150 l~kl~~~~~~li~~---kv~~~~~~--~~~~d~~Le~I~pSp~~~~yrnKceFsvg~~~~g~~~~vgf~lg~~~~g~~~~ 224 (534)
T KOG2187|consen 150 LQKLERLIGDLIRA---KVAFLGPQ--YHLHDRVLEVIIPSPIQNGYRNKCEFSVGQLLDGEDDTVGFVLGRFSKGAFAV 224 (534)
T ss_pred HHHHHHHHHHHHhh---eeeccccc--chhhcccccccccCccccCchhcceeeccccccCCcCceeeeeeeeecCceEE
Confidence 99998843221111 11233222 333456899999999999999999999999889998 9999999999999999
Q ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCCCCccccchhcccccccceEEEEEEec
Q 002990 406 EEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485 (860)
Q Consensus 406 ~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~~~~~~~~~~~~~~~~~~evmliv~v~ 485 (860)
+.+.+|+++++.+..+++.||.|+++++|.+||.+.+.||||+||||+.. .+..|+|+.+.
T Consensus 225 ~~pvd~~llp~~~~~V~s~~Q~f~R~t~l~P~~~~~~~G~wk~LtVRt~~-------------------~~~~~~il~i~ 285 (534)
T KOG2187|consen 225 VAPVDVKLLPEIMSQVASAVQEFYRETKLSPYDDFPKGGFWKQLTVRTEF-------------------RGGAMAILTIH 285 (534)
T ss_pred eccccccccChHHHHHHHHHHHHHhcCCCccccccCCCCceeeeEEEecc-------------------cCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999543 24578888888
Q ss_pred CCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcceecccCCCCCCCCcccccccceEEEE
Q 002990 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDS 565 (860)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~~~~~~~~~~G~~~i~E~ 565 (860)
+..+..+.+.++...+.+.|..+++..+. +..+|+|.+...++. +.+.|+.++ .|+.+|+|.
T Consensus 286 ~~~l~~e~l~e~~~ki~~~f~~~~~~a~~---l~~l~~q~~~~ts~~-~~~~~~~l~--------------~~~~~I~E~ 347 (534)
T KOG2187|consen 286 PCKLATEELTELKKKIEQRFLSGPGFASG---LRVLYLQESGHTSDG-QEGKPLQLV--------------GGDPYITES 347 (534)
T ss_pred eecccHHHHHHHHHHHHHHHhcccccccc---eeEEEEecccccccC-CCCCCeEEE--------------ccccEEEee
Confidence 87787788888888888888877654432 566999998777665 444444332 468899999
Q ss_pred ECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH
Q 002990 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 566 i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~ 645 (860)
++|++|+|||++|||+|+.+++.||+.|.+|+++..++.+||+|||||+||+++|+++++|+|||++++|+++|++||+.
T Consensus 348 l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 348 LLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred cCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q 002990 646 NGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGS 725 (860)
Q Consensus 646 Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 725 (860)
||++|++|++|.+++++++|++.+.++
T Consensus 428 NgisNa~Fi~gqaE~~~~sl~~~~~~~----------------------------------------------------- 454 (534)
T KOG2187|consen 428 NGISNATFIVGQAEDLFPSLLTPCCDS----------------------------------------------------- 454 (534)
T ss_pred cCccceeeeecchhhccchhcccCCCC-----------------------------------------------------
Confidence 999999999999999999987653210
Q ss_pred CCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhcCCCCCccc
Q 002990 726 GKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPETLVANAIELCTPSPDKIE 805 (860)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~~p~~~~~~ 805 (860)
...++|+||||+|||..||++||++.+++|||||||||.|++||+++||+|+.++
T Consensus 455 -----------------------~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~-- 509 (534)
T KOG2187|consen 455 -----------------------ETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSSPKYR-- 509 (534)
T ss_pred -----------------------CceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcCcccc--
Confidence 1259999999999999999999999889999999999999999999999876542
Q ss_pred ccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeE
Q 002990 806 KNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEM 854 (860)
Q Consensus 806 ~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~ 854 (860)
.++ .+|++++|++|||||||+|||+
T Consensus 510 ---~~~---------------------g~fr~~~~~~VDlfP~T~h~E~ 534 (534)
T KOG2187|consen 510 ---LKK---------------------GFFRLVKAVGVDLFPHTPHCEM 534 (534)
T ss_pred ---ccc---------------------cccceeeeeecccCCCCCcCCC
Confidence 122 3599999999999999999996
No 2
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=100.00 E-value=2.9e-64 Score=563.85 Aligned_cols=365 Identities=24% Similarity=0.393 Sum_probs=290.4
Q ss_pred eccCCcccCCChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEE
Q 002990 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (860)
Q Consensus 301 ~d~v~Pl~hl~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~ 380 (860)
.|.+|+|||++|++||++|++.|.++|+| + +. . . ++.+.++++ +||||||++|+
T Consensus 9 ~CGGC~~qhl~y~~Ql~~K~~~v~~~l~r-~--~~-------~-~--------------~~~~~i~~~-~~~YRnr~~l~ 62 (374)
T TIGR02085 9 RCRSCQWLAQPYSEQLTNKQQHLKELLAP-N--AT-------V-V--------------QWLAPVTSA-EQAFRNKAKMV 62 (374)
T ss_pred CCCCCcccCCCHHHHHHHHHHHHHHHHhh-c--CC-------C-c--------------cccCCcCCC-CccccceEEEE
Confidence 79999999999999999999999999998 3 10 0 0 122233444 89999999999
Q ss_pred EeeecCCcceEeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCCC
Q 002990 381 VGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460 (860)
Q Consensus 381 vg~~~~g~~~vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~~ 460 (860)
|+.. .|+..+||+ ..+ +.++++.+|+++++.++.++..+++++.++++++||+.+++|+||+|+||.+..
T Consensus 63 v~~~-~~~~~~G~~----~~~-~~~v~i~~C~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~~~---- 132 (374)
T TIGR02085 63 VSGS-VERPILGIL----HRD-GTPLDLCDCPLYPQSFQPVFAYLKNFIARAGLTPYNVAKKKGELKFILLTESEN---- 132 (374)
T ss_pred EEEc-CCcEEEeEe----cCC-CcEEcCccCCCCCHhHHHHHHHHHHHHHHcCCCCccccCCCccceEEEEEEecc----
Confidence 9753 466789984 233 447899999999999999999999999999999999999999999999997532
Q ss_pred CccccchhcccccccceEEEEEEecCC-CcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcc
Q 002990 461 LDVENLEVNISEVNISEVMLIAQVSSA-TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539 (860)
Q Consensus 461 ~~~~~~~~~~~~~~~~evmliv~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~ 539 (860)
.+++||++.+... .++ ...++.+.+.. ..+ .+.++++.......+....+
T Consensus 133 --------------~~~~~v~l~~~~~~~~~------~~~~~~~~~~~----~~~--~~~~v~~~~~~~~~~~~~g~--- 183 (374)
T TIGR02085 133 --------------SGQLMLRFVLRSETKLA------QIRRALPWLIE----QLP--QLEVISVNIQPVHMAILEGE--- 183 (374)
T ss_pred --------------CCCEEEEEEECCCccch------hHHHHHHHHHH----HCC--CcEEEEEEECCCCCCceECc---
Confidence 2478887754331 111 12233333321 112 24455544322221111110
Q ss_pred eecccCCCCCCCCcccccccceEEEEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHH
Q 002990 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL 619 (860)
Q Consensus 540 ~~l~~~~~~~~~~~~~~~G~~~i~E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~L 619 (860)
....++|+++++|.++|++|+++|.+|||+|..+++.|++.+.+++...++.+|||||||+|++++.+
T Consensus 184 ------------~~~~l~G~~~i~e~~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~l 251 (374)
T TIGR02085 184 ------------EEIFLTEQQALPERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHC 251 (374)
T ss_pred ------------eEEEEcCCCeeEEEECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHH
Confidence 11234688999999999999999999999999999999999998876555679999999999999999
Q ss_pred HhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCC
Q 002990 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRD 699 (860)
Q Consensus 620 A~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (860)
|..+.+|+|||+++.|++.|++|++.|+++|++|+++|+++++..+.
T Consensus 252 a~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~--------------------------------- 298 (374)
T TIGR02085 252 AGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM--------------------------------- 298 (374)
T ss_pred hhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC---------------------------------
Confidence 99889999999999999999999999999999999999987653210
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeE
Q 002990 700 NVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRL 779 (860)
Q Consensus 700 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rl 779 (860)
. ..|+||+||||.|+++.++++|... .+++|
T Consensus 299 ----------------------------------------------~--~~D~vi~DPPr~G~~~~~l~~l~~~-~p~~i 329 (374)
T TIGR02085 299 ----------------------------------------------S--APELVLVNPPRRGIGKELCDYLSQM-APKFI 329 (374)
T ss_pred ----------------------------------------------C--CCCEEEECCCCCCCcHHHHHHHHhc-CCCeE
Confidence 0 1379999999999999999999874 78999
Q ss_pred EEEecCchhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEEEEe
Q 002990 780 VYISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVMLLE 859 (860)
Q Consensus 780 VYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~lLe 859 (860)
|||||||.||+||+..|. +|++++++||||||||+|||+|++|+
T Consensus 330 vyvsc~p~TlaRDl~~L~------------------------------------gy~l~~~~~~DmFPqT~HvE~v~ll~ 373 (374)
T TIGR02085 330 LYSSCNAQTMAKDIAELS------------------------------------GYQIERVQLFDMFPHTSHYEVLTLLV 373 (374)
T ss_pred EEEEeCHHHHHHHHHHhc------------------------------------CceEEEEEEeccCCCCCcEEEEEEEe
Confidence 999999999999998872 37899999999999999999999999
Q ss_pred C
Q 002990 860 R 860 (860)
Q Consensus 860 R 860 (860)
|
T Consensus 374 r 374 (374)
T TIGR02085 374 R 374 (374)
T ss_pred C
Confidence 7
No 3
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-64 Score=570.21 Aligned_cols=359 Identities=34% Similarity=0.562 Sum_probs=297.0
Q ss_pred eccCCcccCCChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEE
Q 002990 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (860)
Q Consensus 301 ~d~v~Pl~hl~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~ 380 (860)
+|.+|+|+|++|++||++|++.|.++|++++. ....+.+.++++.+||||||++|+
T Consensus 74 ~cggC~lqhl~y~~QL~~K~~~l~~~l~~~~~------------------------~~~~~~~~~~~~~~~~yR~ka~~~ 129 (432)
T COG2265 74 RCGGCQLQHLSYEAQLEFKREQLKELLKRIGG------------------------SEVEIDPTVGMSPPWGYRNRARFS 129 (432)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHhcC------------------------CCcccccccCCCCCcCceeEEEEE
Confidence 59999999999999999999999999999863 112345667888899999999999
Q ss_pred EeeecCCcceEeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCCC
Q 002990 381 VGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460 (860)
Q Consensus 381 vg~~~~g~~~vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~~ 460 (860)
|+....|...+|| |+.+++.|+++.+||+.++....++..++++++..++++||+.++.|.++++++|.+.
T Consensus 130 v~~~~~~~l~~Gf----~~~~s~~iv~i~~C~v~~~~~~~il~~l~~~l~~~~~~~y~~~~~~g~l~~~~~~~g~----- 200 (432)
T COG2265 130 VRGSGKGQLLAGF----FRQGSHEIVDIDECPVFPPRSNEILPLLRELLAKLGLPPYNEKKKKGILRLIVLREGQ----- 200 (432)
T ss_pred EEEcCCCcEEEEe----eccCCCceecccccCccCHhHHHHHHHHHHHHHHcCCCccchhhccceEEEEEeccCc-----
Confidence 9987666556777 5677999999999999999999999999999999999999999999999999999752
Q ss_pred CccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcce
Q 002990 461 LDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540 (860)
Q Consensus 461 ~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~ 540 (860)
++||+++... .+++......+.+.|.. +.++++.......+....+
T Consensus 201 ----------------~~~i~~v~~~----~~~~~~~~~~~~~~~~~----------~~~i~~~i~~~~~~~i~g~---- 246 (432)
T COG2265 201 ----------------EVMVRLVTKH----LPELEQALRELLEAFPE----------IKGIVQNINRAKTNVIEGD---- 246 (432)
T ss_pred ----------------eEEEEEEecc----chhHHHHHHHHHHhhhh----------cceEEEEecCCCCceEEcc----
Confidence 5888776554 22344445555555532 2334332222222221111
Q ss_pred ecccCCCCCCCCcccccccceEEEEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHH
Q 002990 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620 (860)
Q Consensus 541 ~l~~~~~~~~~~~~~~~G~~~i~E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA 620 (860)
....++|...+.| ++.|.++|.+|||+|+.+++.||.++.+|++..++.+|||||||+|+||++||
T Consensus 247 -----------~~~~~~~~~~i~e---~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA 312 (432)
T COG2265 247 -----------EEITLYGLESIRE---GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLA 312 (432)
T ss_pred -----------eeEEEeccccccc---ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhc
Confidence 1123345555555 89999999999999999999999999999999999999999999999999999
Q ss_pred hhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCC
Q 002990 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDN 700 (860)
Q Consensus 621 ~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (860)
+.+++|+|||++++||+.|++||+.||++|++|+.+++++++.+...
T Consensus 313 ~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~--------------------------------- 359 (432)
T COG2265 313 KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE--------------------------------- 359 (432)
T ss_pred ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc---------------------------------
Confidence 99999999999999999999999999999999999999998765421
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEE
Q 002990 701 VPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLV 780 (860)
Q Consensus 701 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlV 780 (860)
.+.+|+|||||||+|+++.+++.|.+. .+++||
T Consensus 360 ----------------------------------------------~~~~d~VvvDPPR~G~~~~~lk~l~~~-~p~~Iv 392 (432)
T COG2265 360 ----------------------------------------------GYKPDVVVVDPPRAGADREVLKQLAKL-KPKRIV 392 (432)
T ss_pred ----------------------------------------------cCCCCEEEECCCCCCCCHHHHHHHHhc-CCCcEE
Confidence 013489999999999999999999874 799999
Q ss_pred EEecCchhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeE
Q 002990 781 YISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEM 854 (860)
Q Consensus 781 YVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~ 854 (860)
||||||.||+||+..|+. ..|++.++++|||||||+|+|+
T Consensus 393 YVSCNP~TlaRDl~~L~~----------------------------------~gy~i~~v~~~DmFP~T~HvE~ 432 (432)
T COG2265 393 YVSCNPATLARDLAILAS----------------------------------TGYEIERVQPFDMFPHTHHVEA 432 (432)
T ss_pred EEeCCHHHHHHHHHHHHh----------------------------------CCeEEEEEEEeccCCCccccCC
Confidence 999999999999999971 2477999999999999999996
No 4
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=100.00 E-value=2.1e-61 Score=550.00 Aligned_cols=369 Identities=28% Similarity=0.433 Sum_probs=300.0
Q ss_pred eccCCcccCCChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEE
Q 002990 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (860)
Q Consensus 301 ~d~v~Pl~hl~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~ 380 (860)
.|.+|+||||+|++||++|++.|.++|+|+++. ... ...+.++++ |.+||||||++|+
T Consensus 63 ~CGGC~~qh~~y~~Ql~~K~~~v~~~l~r~~~~---------~~~------------~~~~~~~~~-~~~~~YRnr~~~~ 120 (431)
T TIGR00479 63 QCGGCQLQHLDYEFQLRSKQQQVIALLERIGKF---------TSE------------PIEPLPTIG-GDPWGYRNKARLS 120 (431)
T ss_pred CCCCCcccCCCHHHHHHHHHHHHHHHHHHhcCC---------CcC------------CceecCCcC-CCCCcccceeEEE
Confidence 699999999999999999999999999998631 000 012456677 7889999999999
Q ss_pred EeeecCCcceEeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCCC
Q 002990 381 VGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460 (860)
Q Consensus 381 vg~~~~g~~~vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~~ 460 (860)
|+...+|++.+|| |..|+|.|+++.+|+++++.+++++..+++++.+.++++|++.+++|+||+|+||.+..+
T Consensus 121 v~~~~~g~~~~G~----~~~~s~~vv~i~~C~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~~~~--- 193 (431)
T TIGR00479 121 LGRSPSGQIQAGF----YQKGSHDIVPIKQCPVQDPALNLLLPKVKAILENFGASIYLEHKELGKARHGVLRIGRRT--- 193 (431)
T ss_pred eeecCCCCEEEee----ecCCCcceEcCCCCCCCCHHHHHHHHHHHHHHHHcCCCccccccCcccceEEEEEEeccC---
Confidence 9754457778898 567889999999999999999999999999999999999999999999999999986432
Q ss_pred CccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcce
Q 002990 461 LDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540 (860)
Q Consensus 461 ~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~ 540 (860)
+++|++++.....++. ..++.+.+.+. .| .+.+++++.+....+....
T Consensus 194 ---------------~~~~v~~~~~~~~~~~------~~~~~~~l~~~----~~--~v~~v~~~~~~~~~~~~~g----- 241 (431)
T TIGR00479 194 ---------------GELLLVLRTALEGFPH------KEELALELQER----YP--DVKSICQNINPEKTNVIFG----- 241 (431)
T ss_pred ---------------CCEEEEEEECCCcccc------HHHHHHHHHHh----CC--CceEEEEEeCCCCCCeeeC-----
Confidence 4688877544333222 12344444321 12 2567766543222111111
Q ss_pred ecccCCCCCCCCcccccccceEEEEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHH
Q 002990 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620 (860)
Q Consensus 541 ~l~~~~~~~~~~~~~~~G~~~i~E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA 620 (860)
.+...++|..+++|+++|++|.++|.+|||+|+.+++.|++.+.+++.+.++.+|||+|||+|++++.||
T Consensus 242 ----------~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 242 ----------EETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred ----------CceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHH
Confidence 1123346899999999999999999999999999999999999999888888899999999999999999
Q ss_pred hhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCC
Q 002990 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDN 700 (860)
Q Consensus 621 ~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (860)
+.+.+|+|||+++.|++.|++|++.|++.|++|+++|+.+.+..+....
T Consensus 312 ~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~------------------------------- 360 (431)
T TIGR00479 312 KQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG------------------------------- 360 (431)
T ss_pred HhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC-------------------------------
Confidence 9999999999999999999999999999999999999988765431100
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEE
Q 002990 701 VPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLV 780 (860)
Q Consensus 701 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlV 780 (860)
. ..|+||+||||.|++..++++|..+ .+++||
T Consensus 361 ---------------------------------------------~--~~D~vi~dPPr~G~~~~~l~~l~~l-~~~~iv 392 (431)
T TIGR00479 361 ---------------------------------------------Q--IPDVLLLDPPRKGCAAEVLRTIIEL-KPERIV 392 (431)
T ss_pred ---------------------------------------------C--CCCEEEECcCCCCCCHHHHHHHHhc-CCCEEE
Confidence 0 1379999999999999999999874 689999
Q ss_pred EEecCchhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCcee
Q 002990 781 YISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCE 853 (860)
Q Consensus 781 YVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE 853 (860)
||||||.||+||+..|+. .+|++.+++||||||||+|||
T Consensus 393 yvsc~p~tlard~~~l~~----------------------------------~gy~~~~~~~~DmFP~T~HvE 431 (431)
T TIGR00479 393 YVSCNPATLARDLEFLCK----------------------------------EGYGITWVQPVDMFPHTAHVE 431 (431)
T ss_pred EEcCCHHHHHHHHHHHHH----------------------------------CCeeEEEEEEeccCCCCCCCC
Confidence 999999999999988861 247899999999999999998
No 5
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=100.00 E-value=2.2e-61 Score=538.36 Aligned_cols=357 Identities=22% Similarity=0.307 Sum_probs=270.9
Q ss_pred ccCCcccCCChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEEE
Q 002990 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSV 381 (860)
Q Consensus 302 d~v~Pl~hl~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~v 381 (860)
|.+|+||||+|++||++|++.|.++|+|++. . .+ +|++|| +||||||++|+|
T Consensus 1 CGGC~~qhl~y~~Ql~~K~~~v~~~l~r~~~------------------------~--~~-~i~~s~-~~~YRnr~~~~v 52 (362)
T PRK05031 1 MTPECLPPEQYEAQLAEKVARLKELFAPFSA------------------------P--EP-EVFRSP-PSHYRMRAEFRI 52 (362)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHhcCC------------------------C--CC-CcccCC-cccccceEEEEE
Confidence 6799999999999999999999999999741 0 12 567776 799999999999
Q ss_pred eeecCCcceEeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCCCC
Q 002990 382 GYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL 461 (860)
Q Consensus 382 g~~~~g~~~vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~~~ 461 (860)
+.. .|+..+|| |+.|+|.|+++.+|+++++.+++++..++++++.. +...+. ++++.++.+ .
T Consensus 53 ~~~-~g~~~~G~----~~~~s~~vv~i~~C~i~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~-~----- 114 (362)
T PRK05031 53 WHE-GDDLYYAM----FDQQTKQRIRIDQFPIASELINALMPALLAALRAN-----PVLRHK--LFQVDFLST-L----- 114 (362)
T ss_pred EEe-CCCEEEEE----EeCCCCCeEECccCcCCCHHHHHHHHHHHHHHHhc-----CchheE--EEEEEEEec-C-----
Confidence 642 36677888 46788899999999999999999999999988753 322222 222332222 1
Q ss_pred ccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCccee
Q 002990 462 DVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541 (860)
Q Consensus 462 ~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~~ 541 (860)
.+++||++++. ..++ +.+ ..+...+.. ..|. + ++ +. .+ . .
T Consensus 115 -------------~g~~~v~l~~~-~~~~-~~~----~~~~~~l~~----~~~~--~-~i--~~-~~-------~-~--- 154 (362)
T PRK05031 115 -------------SGEILVSLLYH-KKLD-EEW----EQAAKALRD----ALFN--V-HL--IG-RS-------R-K--- 154 (362)
T ss_pred -------------CCCEEEEEEEC-CCCC-hHH----HHHHHHHHH----HCCC--c-EE--Ee-cC-------C-C---
Confidence 24788877543 2222 111 223333321 1121 2 22 11 00 0 0
Q ss_pred cccCCCCCCCCcccccccceEEEEE--CC--eEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHH
Q 002990 542 LSIPKADGEPEESNDVVEARIHDSI--SN--LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGL 617 (860)
Q Consensus 542 l~~~~~~~~~~~~~~~G~~~i~E~i--~g--l~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L 617 (860)
...++|.++++|++ +| +.|+++|.+|||+|+.+++.|++++.+++... +.+|||||||+|++++
T Consensus 155 -----------~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl 222 (362)
T PRK05031 155 -----------QKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTL 222 (362)
T ss_pred -----------cEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHH
Confidence 01236889999999 67 89999999999999999999999999987643 3469999999999999
Q ss_pred HHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCC
Q 002990 618 TLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSS 697 (860)
Q Consensus 618 ~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (860)
+|++.+++|+|||+++.|++.|++|++.|+++|++|+++|+.+++..+...... +
T Consensus 223 ~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~----~--------------------- 277 (362)
T PRK05031 223 ALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREF----N--------------------- 277 (362)
T ss_pred HHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccc----c---------------------
Confidence 999999999999999999999999999999999999999999988664321000 0
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCC
Q 002990 698 RDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQ 777 (860)
Q Consensus 698 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~ 777 (860)
+..+ .. ...++.|+|||||||+|++++++++|.. ++
T Consensus 278 -----------------------~~~~------------~~------~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~ 313 (362)
T PRK05031 278 -----------------------RLKG------------ID------LKSYNFSTIFVDPPRAGLDDETLKLVQA---YE 313 (362)
T ss_pred -----------------------cccc------------cc------ccCCCCCEEEECCCCCCCcHHHHHHHHc---cC
Confidence 0000 00 0011248999999999999999999986 59
Q ss_pred eEEEEecCchhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEEE
Q 002990 778 RLVYISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVML 857 (860)
Q Consensus 778 rlVYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~l 857 (860)
+||||||||.||+||+..|+ ++|++++++||||||||+|||+|++
T Consensus 314 ~ivyvSC~p~tlarDl~~L~-----------------------------------~gY~l~~v~~~DmFPqT~HvE~v~l 358 (362)
T PRK05031 314 RILYISCNPETLCENLETLS-----------------------------------QTHKVERFALFDQFPYTHHMECGVL 358 (362)
T ss_pred CEEEEEeCHHHHHHHHHHHc-----------------------------------CCcEEEEEEEcccCCCCCcEEEEEE
Confidence 99999999999999999886 1388999999999999999999999
Q ss_pred EeC
Q 002990 858 LER 860 (860)
Q Consensus 858 LeR 860 (860)
|+|
T Consensus 359 L~r 361 (362)
T PRK05031 359 LEK 361 (362)
T ss_pred EEe
Confidence 987
No 6
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=100.00 E-value=5.7e-60 Score=525.10 Aligned_cols=347 Identities=34% Similarity=0.564 Sum_probs=233.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEEEeeecCCcce
Q 002990 311 SYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPT 390 (860)
Q Consensus 311 ~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~vg~~~~g~~~ 390 (860)
.|++||++|++.|.++|+|++. . ++ .|++|| .||||||++|+|+.+ .|+..
T Consensus 1 ~Y~~QL~~K~~~l~~~l~~~~~------------------------~--~~-~i~~s~-~~~YRnKa~~~v~~~-~~~~~ 51 (352)
T PF05958_consen 1 KYEKQLEFKQQILKELLRRIGK------------------------L--EI-EIIASP-PWGYRNKARFPVRKD-KGKLI 51 (352)
T ss_dssp GHHHHHHHHHHHHHHHHTTT--------------------------------EEE----SSS-BSEEEEEEEEC-TTCEE
T ss_pred ChHHHHHHHHHHHHHHHHhcCC------------------------C--CC-ceecCC-ChhcccEEEEEEEEc-CCcEE
Confidence 5999999999999999988642 0 11 367788 689999999999875 45566
Q ss_pred EeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCCCCccccchhcc
Q 002990 391 VGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470 (860)
Q Consensus 391 vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~~~~~~~~~~~~ 470 (860)
+|| |+.+++.++++.+||+.++.+++++..++++++... . . ...++++.++.+.
T Consensus 52 ~g~----~~~~s~~iv~i~~C~i~~~~In~~l~~l~~~l~~~~-----~-l-~~~l~~i~~~~~~--------------- 105 (352)
T PF05958_consen 52 LGF----FRRGSHEIVDIEECPIADPEINKLLPALRELLKKNE-----K-L-KNKLFHIEFLSTL--------------- 105 (352)
T ss_dssp EEE----EECTTS-EEE-S--TTB-HHHHHHHHHHHHHHTTSH-----H-H-HTCEEEEEEEEET---------------
T ss_pred EEE----EecCCCceEECCCCccccHHHHHHHHHHHHHHhhhh-----h-h-hceeeEEEEEEec---------------
Confidence 666 567788899999999999999999999999986421 1 1 2236677777543
Q ss_pred cccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcceecccCCCCCC
Q 002990 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGE 550 (860)
Q Consensus 471 ~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~~~ 550 (860)
.+++||++.... .+++ ........|... + .+.+... .. .
T Consensus 106 ----~~ei~V~lv~~~-~l~~-----~~~~~~~~L~~~---------~-~~~ii~~-~~------~-------------- 144 (352)
T PF05958_consen 106 ----SGEIMVTLVTHK-PLDD-----EWKEALEALAQN---------L-NVNIIGR-SK------K-------------- 144 (352)
T ss_dssp ----TCEEEEEEEESS----H-----HHHHHHHHHHHT---------E-EEEEECC-CT------C--------------
T ss_pred ----CCCEEEEEEeCC-cCCH-----HHHHHHHhhhhc---------c-eEEEEEc-CC------c--------------
Confidence 257888876543 3432 223333444321 1 1111110 00 0
Q ss_pred CCcccccccceEEEEE----CCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEE
Q 002990 551 PEESNDVVEARIHDSI----SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626 (860)
Q Consensus 551 ~~~~~~~G~~~i~E~i----~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~V 626 (860)
.....|.+++.+.+ .++.|+++|++|||+|+.+++.||+++.++++..++ .|||||||+|+||++||+.+++|
T Consensus 145 --~~~~~~~~~v~~~l~~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V 221 (352)
T PF05958_consen 145 --TKIVLGQDYVEERLEIQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKV 221 (352)
T ss_dssp --EEEECS-CEEECE--ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEE
T ss_pred --cEEEccCcEEeeEeeeeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeE
Confidence 00112444444443 479999999999999999999999999999988766 79999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCC
Q 002990 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEG 706 (860)
Q Consensus 627 igVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (860)
+|||+++.||++|++||+.|+++|++|++++++++...+...-. +.
T Consensus 222 ~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~-----------~~----------------------- 267 (352)
T PF05958_consen 222 IGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKARE-----------FN----------------------- 267 (352)
T ss_dssp EEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-G-----------GT-----------------------
T ss_pred EEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHH-----------HH-----------------------
Confidence 99999999999999999999999999999999887654421000 00
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCc
Q 002990 707 CSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNP 786 (860)
Q Consensus 707 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp 786 (860)
++. ...+ ..+..|+|||||||+|+++.+++.|+. +++||||||||
T Consensus 268 --------------~~~------~~~~------------~~~~~d~vilDPPR~G~~~~~~~~~~~---~~~ivYvSCnP 312 (352)
T PF05958_consen 268 --------------RLK------GIDL------------KSFKFDAVILDPPRAGLDEKVIELIKK---LKRIVYVSCNP 312 (352)
T ss_dssp --------------TGG------GS-G------------GCTTESEEEE---TT-SCHHHHHHHHH---SSEEEEEES-H
T ss_pred --------------hhh------hhhh------------hhcCCCEEEEcCCCCCchHHHHHHHhc---CCeEEEEECCH
Confidence 000 0000 123458999999999999999999874 58999999999
Q ss_pred hhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEEEEeC
Q 002990 787 ETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVMLLER 860 (860)
Q Consensus 787 ~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~lLeR 860 (860)
+||+||+..|+ ++|++.+++||||||||+|||+|++|+|
T Consensus 313 ~tlaRDl~~L~-----------------------------------~~y~~~~v~~~DmFP~T~HvE~v~lL~r 351 (352)
T PF05958_consen 313 ATLARDLKILK-----------------------------------EGYKLEKVQPVDMFPQTHHVETVALLER 351 (352)
T ss_dssp HHHHHHHHHHH-----------------------------------CCEEEEEEEEE-SSTTSS--EEEEEEEE
T ss_pred HHHHHHHHHHh-----------------------------------hcCEEEEEEEeecCCCCCcEEEEEEEEe
Confidence 99999999986 1378999999999999999999999997
No 7
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=100.00 E-value=3.4e-57 Score=517.21 Aligned_cols=357 Identities=26% Similarity=0.378 Sum_probs=268.3
Q ss_pred eccCCcccCCChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEE
Q 002990 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (860)
Q Consensus 301 ~d~v~Pl~hl~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~ 380 (860)
.|.+|+||||+|++||++|++.|.++|+|++.. + ...+.+++++ .+||||||++|+
T Consensus 85 ~CGGC~~qh~~y~~Ql~~K~~~v~~~l~r~~~~---------~--------------~~~~~~~i~~-~~~~YRnk~~~~ 140 (443)
T PRK13168 85 VCGGCQLQHLSIDAQIASKQRALEDLLKHLAGV---------E--------------PEEVLPPIAG-PPWGYRRRARLS 140 (443)
T ss_pred cCcCchhcCCCHHHHHHHHHHHHHHHHHHhcCC---------C--------------cccccCCCcC-CCCCCCceEEEE
Confidence 699999999999999999999999999997530 0 0122212333 379999999999
Q ss_pred Eeee-cCCcceEeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCC
Q 002990 381 VGYS-LQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459 (860)
Q Consensus 381 vg~~-~~g~~~vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~ 459 (860)
|+.+ .+|.+.+||+ ..|+|.|+++.+|+++++.+++++..+++++... +.. |.+++|.||.+. +
T Consensus 141 ~~~~~~~g~~~~G~~----~~~s~~vv~i~~C~l~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~l~~~~~~-~-- 205 (443)
T PRK13168 141 VRYVPKKGQLLVGFR----EKNSSDIVDIDQCPVLVPPLSALLPPLRALLSSL-----SAK---RRLGHVELAQGD-N-- 205 (443)
T ss_pred eeeecCCCCEEEEEe----cCCCceeEECCCCccCCHhHHHHHHHHHHHHHHc-----CCC---ccccEEEEEEeC-C--
Confidence 9753 2566788884 6788999999999999999999999999987653 332 344555566432 2
Q ss_pred CCccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcc
Q 002990 460 PLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539 (860)
Q Consensus 460 ~~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~ 539 (860)
+..|+++ +. ..+++.. ..++.+ +... ..+ +++++... .+.
T Consensus 206 ----------------~~~~~~~-~~-~~~~~~~----~~~~~~-~~~~-------~~~-~i~~~~~~---------~~~ 245 (443)
T PRK13168 206 ----------------GTALVLR-HL-EPLSEAD----RAKLRA-FAEQ-------HGL-QLYLQPKG---------PDL 245 (443)
T ss_pred ----------------ceEEEEE-Ec-CCCChHH----HHHHHH-Hhhc-------ccE-EEEEECCC---------Ccc
Confidence 3444432 21 2232211 122322 2210 113 55544321 112
Q ss_pred eecccCCCCCCCCcccccccceEEEEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHH
Q 002990 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL 619 (860)
Q Consensus 540 ~~l~~~~~~~~~~~~~~~G~~~i~E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~L 619 (860)
..+.. ..+|...+.+.++|+.|+++|.+|||+|..+++.|++.+.+++.+.++.+|||+|||+|++++.|
T Consensus 246 ~~i~g----------~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~l 315 (443)
T PRK13168 246 VHLLG----------PADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPL 315 (443)
T ss_pred eeecc----------cccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHH
Confidence 21110 01233234444999999999999999999999999999999988888899999999999999999
Q ss_pred HhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCC
Q 002990 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRD 699 (860)
Q Consensus 620 A~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (860)
|+.+.+|+|||+++.|++.|++|++.|+++|++|+++|+.+.+..+. +.
T Consensus 316 a~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~--~~----------------------------- 364 (443)
T PRK13168 316 ARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP--WA----------------------------- 364 (443)
T ss_pred HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh--hh-----------------------------
Confidence 99999999999999999999999999999999999999987643210 00
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeE
Q 002990 700 NVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRL 779 (860)
Q Consensus 700 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rl 779 (860)
+ . ..|+||+||||.|+. .++++|... .+++|
T Consensus 365 -----------------------------------------~----~--~fD~Vi~dPPr~g~~-~~~~~l~~~-~~~~i 395 (443)
T PRK13168 365 -----------------------------------------L----G--GFDKVLLDPPRAGAA-EVMQALAKL-GPKRI 395 (443)
T ss_pred -----------------------------------------c----C--CCCEEEECcCCcChH-HHHHHHHhc-CCCeE
Confidence 0 0 137999999999986 777999874 78999
Q ss_pred EEEecCchhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEEEEe
Q 002990 780 VYISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVMLLE 859 (860)
Q Consensus 780 VYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~lLe 859 (860)
|||||||.||+||+..|+. .+|++++++||||||||+|||+|++|+
T Consensus 396 vyvSCnp~tlaRDl~~L~~----------------------------------~gY~l~~i~~~DmFP~T~HvE~v~lL~ 441 (443)
T PRK13168 396 VYVSCNPATLARDAGVLVE----------------------------------AGYRLKRAGMLDMFPHTGHVESMALFE 441 (443)
T ss_pred EEEEeChHHhhccHHHHhh----------------------------------CCcEEEEEEEeccCCCCCcEEEEEEEE
Confidence 9999999999999999861 248899999999999999999999998
Q ss_pred C
Q 002990 860 R 860 (860)
Q Consensus 860 R 860 (860)
|
T Consensus 442 r 442 (443)
T PRK13168 442 R 442 (443)
T ss_pred e
Confidence 7
No 8
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=100.00 E-value=7.1e-56 Score=492.51 Aligned_cols=348 Identities=22% Similarity=0.323 Sum_probs=260.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEEEeeecCCcce
Q 002990 311 SYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPT 390 (860)
Q Consensus 311 ~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~vg~~~~g~~~ 390 (860)
+|++||++|++.|.++|+|++. .+.++++|| +||||||++|+|... +|++.
T Consensus 1 ~y~~Ql~~K~~~v~~~l~r~~~---------------------------~~~~v~~s~-~~~YRnr~~~~~~~~-~g~~~ 51 (353)
T TIGR02143 1 QYTAQLAEKVSRLKDLFAPFDA---------------------------PEPEVFESP-DKHYRMRAEFRIWHE-GDDLY 51 (353)
T ss_pred ChHHHHHHHHHHHHHHHHhcCC---------------------------CcCCCcCCc-cccccceEEEEEEec-CCcEE
Confidence 6999999999999999998641 245778899 999999999999532 57777
Q ss_pred EeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCCCCccccchhcc
Q 002990 391 VGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470 (860)
Q Consensus 391 vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~~~~~~~~~~~~ 470 (860)
+||+ +.++|.|+++.+||+.++.++.++..+++++.. |+...++| +++..+.+ .
T Consensus 52 ~G~~----~~~s~~iv~i~~C~i~~~~i~~~~~~~~~~l~~-----~~~~~~~~--~~~~~~~~-~-------------- 105 (353)
T TIGR02143 52 YAMF----DQQTKSKIRVDQFPAASELINRLMPALIAALRQ-----NPALRHKL--FQVDFLTT-L-------------- 105 (353)
T ss_pred EEEE----eCCCCCeEECCCCcCCCHHHHHHHHHHHHHHHh-----CCccccee--EEEEEEec-C--------------
Confidence 8884 678899999999999999999999999998764 33334443 23332221 1
Q ss_pred cccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcceecccCCCCCC
Q 002990 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGE 550 (860)
Q Consensus 471 ~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~~~ 550 (860)
.+++||+++ ....+.. .+..+...+.. ... .+ .+ +.. .+
T Consensus 106 ----~~~~~v~l~-~~~~~~~-----~~~~~~~~~~~----~~~--~~-~~--~~~--------~~-------------- 144 (353)
T TIGR02143 106 ----SGEALVSLL-YHKQLDD-----EWRQAAEALKD----IKL--NV-NL--IGR--------AR-------------- 144 (353)
T ss_pred ----CCCEEEEEE-eCCcccH-----HHHHHHHHHHH----hCC--ce-EE--EEc--------CC--------------
Confidence 246888774 2222211 11222122211 000 01 11 100 00
Q ss_pred CCcccccccceEEEEE--CC--eEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEE
Q 002990 551 PEESNDVVEARIHDSI--SN--LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626 (860)
Q Consensus 551 ~~~~~~~G~~~i~E~i--~g--l~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~V 626 (860)
....++|.+++.|.+ +| +.|+++|.+|||+|+.+++.|++.+.+++...+ .+|||||||+|+|++.|++.+++|
T Consensus 145 -~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v 222 (353)
T TIGR02143 145 -KKKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRV 222 (353)
T ss_pred -CcEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEE
Confidence 011236888999988 67 899999999999999999999999999886444 369999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCC
Q 002990 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEG 706 (860)
Q Consensus 627 igVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (860)
+|||+++.|++.|++|++.|+++|++|+++|+++++........
T Consensus 223 ~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~------------------------------------ 266 (353)
T TIGR02143 223 LATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVRE------------------------------------ 266 (353)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccc------------------------------------
Confidence 99999999999999999999999999999999988754311000
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCc
Q 002990 707 CSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNP 786 (860)
Q Consensus 707 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp 786 (860)
+. |+.+ .++ ..++.|+|||||||+|+++.++++|.. +++||||||||
T Consensus 267 -----~~-------~~~~---------------~~~---~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvsC~p 313 (353)
T TIGR02143 267 -----FR-------RLKG---------------IDL---KSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYISCNP 313 (353)
T ss_pred -----cc-------cccc---------------ccc---ccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEEcCH
Confidence 00 0000 000 011248999999999999999999975 59999999999
Q ss_pred hhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEEEEeC
Q 002990 787 ETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVMLLER 860 (860)
Q Consensus 787 ~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~lLeR 860 (860)
.||+||+..|+. .|++.+++||||||||+|||+|++|+|
T Consensus 314 ~tlaRDl~~L~~-----------------------------------~Y~l~~v~~~DmFP~T~HvE~v~lL~r 352 (353)
T TIGR02143 314 ETLKANLEQLSE-----------------------------------THRVERFALFDQFPYTHHMECGVLLER 352 (353)
T ss_pred HHHHHHHHHHhc-----------------------------------CcEEEEEEEcccCCCCCcEEEEEEEEe
Confidence 999999998861 288999999999999999999999987
No 9
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=100.00 E-value=1.5e-50 Score=443.68 Aligned_cols=308 Identities=24% Similarity=0.389 Sum_probs=243.9
Q ss_pred CCcceEeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCCCCcccc
Q 002990 386 QAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVEN 465 (860)
Q Consensus 386 ~g~~~vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~~~~~~~ 465 (860)
.++..+||+. .+. .++++.+||++++.+++++..++++++++++++|++..++|+||+|+||.+..+
T Consensus 7 ~~~~~~G~~~----~~~-~~v~i~~C~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~lr~~~ir~~~~~-------- 73 (315)
T PRK03522 7 VERPLLGILH----RDG-TPVDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSD-------- 73 (315)
T ss_pred cCccEEeEEc----CCC-cEEcCCCCcCCCHHHHHHHHHHHHHHHHcCCCCCcCCCCCceeeEEEEEeecCC--------
Confidence 4678899963 322 347899999999999999999999999999999999999999999999975322
Q ss_pred chhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcceecccC
Q 002990 466 LEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545 (860)
Q Consensus 466 ~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~~l~~~ 545 (860)
+++||++++...... +. ...+.+.+.. ..+. +.++++..+....+....+
T Consensus 74 ----------~~~~v~l~~~~~~~~-~~----~~~~~~~~~~----~~~~--~~~v~~~~~~~~~~~~~g~--------- 123 (315)
T PRK03522 74 ----------GELMLRFVLRSETKL-AR----LRRALPWLQA----QLPQ--LKVISVNIQPVHMAILEGE--------- 123 (315)
T ss_pred ----------CCEEEEEEECCCccc-hh----HHHHHHHHHH----HCCC--CEEEEEEECCCCCCcccCC---------
Confidence 478888754432110 11 1222222321 1232 4454443322222211111
Q ss_pred CCCCCCCcccccccceEEEEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCE
Q 002990 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM 625 (860)
Q Consensus 546 ~~~~~~~~~~~~G~~~i~E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~ 625 (860)
+...++|..++.|+++|+.|.++|.+|||+|+.+++.|++.+.+++...++.+|||+|||+|.+++.||+.+.+
T Consensus 124 ------~~~~l~g~~~~~~~~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~ 197 (315)
T PRK03522 124 ------EEIFLTEQQALPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQ 197 (315)
T ss_pred ------ceEEEeCCCeEEEEECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCE
Confidence 11234688999999999999999999999999999999999999886556789999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCC
Q 002990 626 VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENE 705 (860)
Q Consensus 626 VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (860)
|+|||+++.|++.|++|++.++++|++|+++|+.+++....
T Consensus 198 V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~--------------------------------------- 238 (315)
T PRK03522 198 LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG--------------------------------------- 238 (315)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC---------------------------------------
Confidence 99999999999999999999999999999999987642110
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecC
Q 002990 706 GCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCN 785 (860)
Q Consensus 706 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCn 785 (860)
. ..|+||+||||.|+++.++++|... .+++|||||||
T Consensus 239 ----------------------------------------~--~~D~Vv~dPPr~G~~~~~~~~l~~~-~~~~ivyvsc~ 275 (315)
T PRK03522 239 ----------------------------------------E--VPDLVLVNPPRRGIGKELCDYLSQM-APRFILYSSCN 275 (315)
T ss_pred ----------------------------------------C--CCeEEEECCCCCCccHHHHHHHHHc-CCCeEEEEECC
Confidence 0 1379999999999999999999874 78999999999
Q ss_pred chhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEEEEeC
Q 002990 786 PETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVMLLER 860 (860)
Q Consensus 786 p~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~lLeR 860 (860)
|.||+||+..|. +|++++++||||||||+|||+|++|+|
T Consensus 276 p~t~~rd~~~l~------------------------------------~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 276 AQTMAKDLAHLP------------------------------------GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred cccchhHHhhcc------------------------------------CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 999999987662 388999999999999999999999997
No 10
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.77 E-value=2.8e-18 Score=193.20 Aligned_cols=150 Identities=19% Similarity=0.292 Sum_probs=126.9
Q ss_pred CCCcccCCHHHHHHHHHHHhhhccCC-CCCcEEeeccCCcHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 002990 575 PTAFFQVNTLAAEKLYSLGGDWADLG-PDTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEINGIKNC 651 (860)
Q Consensus 575 p~sFFQvN~~~ae~L~~~i~~~~~l~-~~~~VLDL~CGtG~i~L~LA~~~~--~VigVEis~~AIe~Ar~NA~~Ngi~Nv 651 (860)
...|||+|...++.|...+.+++... ++.+|||+|||+|.+++.+|.... +|+++|+++.|++.+++|++.|+++++
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~ 109 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENE 109 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCce
Confidence 46899999999999999888876543 346899999999999999987654 999999999999999999999999999
Q ss_pred EEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcc
Q 002990 652 RFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQS 731 (860)
Q Consensus 652 ~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 731 (860)
+++++|+..++.. .
T Consensus 110 ~v~~~Da~~~l~~---~--------------------------------------------------------------- 123 (382)
T PRK04338 110 KVFNKDANALLHE---E--------------------------------------------------------------- 123 (382)
T ss_pred EEEhhhHHHHHhh---c---------------------------------------------------------------
Confidence 9999999876532 0
Q ss_pred ccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHH-HHhccCCCeEEEEecCchhhHHHHHHhcCCCCCcccccccc
Q 002990 732 QLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKI-LRTHARLQRLVYISCNPETLVANAIELCTPSPDKIEKNKDN 810 (860)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~-lr~~~~~~rlVYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~ 810 (860)
..| |+|++||| |....++++ |+. .++++||||| +||+..||.
T Consensus 124 --------------~~f--D~V~lDP~--Gs~~~~l~~al~~-~~~~gilyvS------AtD~~~L~g------------ 166 (382)
T PRK04338 124 --------------RKF--DVVDIDPF--GSPAPFLDSAIRS-VKRGGLLCVT------ATDTAPLCG------------ 166 (382)
T ss_pred --------------CCC--CEEEECCC--CCcHHHHHHHHHH-hcCCCEEEEE------ecCchhhcC------------
Confidence 013 79999999 777788887 665 4789999999 899999871
Q ss_pred cCccccccccccccccccCCCCCCccceeeeeeccCCCCC
Q 002990 811 RGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTS 850 (860)
Q Consensus 811 ~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~ 850 (860)
.|.+..++++|||||..
T Consensus 167 -----------------------~y~~~~~~~yd~fP~~~ 183 (382)
T PRK04338 167 -----------------------AYPKSCLRKYGAVPLKT 183 (382)
T ss_pred -----------------------CChHHHHHHhcCcccCC
Confidence 27788999999999865
No 11
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.70 E-value=9.9e-17 Score=165.78 Aligned_cols=139 Identities=20% Similarity=0.312 Sum_probs=106.4
Q ss_pred ECCeEEEEcCCCcccCCHHHHHHHHHHHhhhcc-CCCCCcEEeeccCCcHHHHH-HHhhCCEEEEEeCCHHHHHHHHHHH
Q 002990 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLT-LAHRVGMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 566 i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~-l~~~~~VLDL~CGtG~i~L~-LA~~~~~VigVEis~~AIe~Ar~NA 643 (860)
..|.++...+...+.. .++.+++.+..++. ...+.+|||||||+|.+++. +++.+.+|++||+++.+++.|++|+
T Consensus 20 ~~g~~l~~~~~~~~Rp---~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl 96 (199)
T PRK10909 20 WRGRKLPVPDSPGLRP---TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNL 96 (199)
T ss_pred cCCCEeCCCCCCCcCc---CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH
Confidence 3667777665444443 33444444444332 23567999999999999996 5666789999999999999999999
Q ss_pred HHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 002990 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPE 723 (860)
Q Consensus 644 ~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 723 (860)
+.+++.++.++++|+.+.+... .
T Consensus 97 ~~~~~~~v~~~~~D~~~~l~~~--~------------------------------------------------------- 119 (199)
T PRK10909 97 ATLKAGNARVVNTNALSFLAQP--G------------------------------------------------------- 119 (199)
T ss_pred HHhCCCcEEEEEchHHHHHhhc--C-------------------------------------------------------
Confidence 9999999999999987654320 0
Q ss_pred CCCCCCccccccccccCCCCCCCCCCccEEEEcCC-CCCCcHHHHHHHHhc--cCCCeEEEEecCchh
Q 002990 724 GSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPP-RGGLHPTVIKILRTH--ARLQRLVYISCNPET 788 (860)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPP-R~Gl~~~vi~~lr~~--~~~~rlVYVSCnp~t 788 (860)
. ..|+||+||| |.|+...+++.|... ..+.+||||+|+..+
T Consensus 120 ----------------------~--~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 120 ----------------------T--PHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred ----------------------C--CceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 0 1389999999 999999999999762 367999999999854
No 12
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.38 E-value=5e-12 Score=135.33 Aligned_cols=92 Identities=24% Similarity=0.355 Sum_probs=78.0
Q ss_pred EECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccC-CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHH
Q 002990 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL-GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 565 ~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l-~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~ 641 (860)
.+.|++|.++|++|+ |...++.|++.+..++.. ....+|||+|||+|.+++.+++.. .+|+|||+++.|++.|++
T Consensus 51 ~f~g~~~~v~~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~ 128 (251)
T TIGR03704 51 EFCGLRIAVDPGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARR 128 (251)
T ss_pred eEcCeEEEECCCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 447899999999997 777899999998877642 234589999999999999999764 489999999999999999
Q ss_pred HHHHcCCCcEEEEEccHHHH
Q 002990 642 NAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 642 NA~~Ngi~Nv~fi~gDae~~ 661 (860)
|++.|++ +|+++|+.+.
T Consensus 129 N~~~~~~---~~~~~D~~~~ 145 (251)
T TIGR03704 129 NLADAGG---TVHEGDLYDA 145 (251)
T ss_pred HHHHcCC---EEEEeechhh
Confidence 9999874 7899987654
No 13
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.38 E-value=1.3e-11 Score=134.43 Aligned_cols=93 Identities=19% Similarity=0.344 Sum_probs=78.3
Q ss_pred ECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHH
Q 002990 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 566 i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA 643 (860)
+.|+.|.++|++|+ +++...+.+...+..++...+..+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|++|+
T Consensus 87 f~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 87 FAGLEFYVDERVLI-PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred ecCcEEEECCCCcc-CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 46789999999999 7777766666655555433445689999999999999999875 59999999999999999999
Q ss_pred HHcCCC-cEEEEEccHH
Q 002990 644 EINGIK-NCRFVCAKAE 659 (860)
Q Consensus 644 ~~Ngi~-Nv~fi~gDae 659 (860)
+.+++. ++.|+++|+.
T Consensus 166 ~~~~~~~~i~~~~~D~~ 182 (284)
T TIGR03533 166 ERHGLEDRVTLIQSDLF 182 (284)
T ss_pred HHcCCCCcEEEEECchh
Confidence 999984 7999999864
No 14
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.35 E-value=1.2e-11 Score=150.00 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=110.8
Q ss_pred EEEEECCeEEEEcCCCcccCCHHHHHHHH-HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHH
Q 002990 562 IHDSISNLRFCISPTAFFQVNTLAAEKLY-SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDA 639 (860)
Q Consensus 562 i~E~i~gl~f~isp~sFFQvN~~~ae~L~-~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~A 639 (860)
+.-.-+|++|.+....+..+....-.+.. .++..+ ..+.+|||||||+|.+++.+++.+ .+|++||+++.|++.|
T Consensus 501 ~~v~e~g~~f~v~~~~~~~tG~flDqr~~R~~~~~~---~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a 577 (702)
T PRK11783 501 LEVTEYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQM---AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWA 577 (702)
T ss_pred EEEEECCEEEEEEcCCCCcceECHHHHHHHHHHHHh---cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 33344899999997654333222111111 223333 246799999999999999999874 5799999999999999
Q ss_pred HHHHHHcCCC--cEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCcc
Q 002990 640 HRNAEINGIK--NCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIA 717 (860)
Q Consensus 640 r~NA~~Ngi~--Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 717 (860)
++|++.||+. +++|+++|+.+++..+ .
T Consensus 578 ~~N~~~ng~~~~~v~~i~~D~~~~l~~~-~-------------------------------------------------- 606 (702)
T PRK11783 578 ERNFALNGLSGRQHRLIQADCLAWLKEA-R-------------------------------------------------- 606 (702)
T ss_pred HHHHHHhCCCccceEEEEccHHHHHHHc-C--------------------------------------------------
Confidence 9999999995 7999999998876432 0
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCc-------------HHHHHHHHhccCCCeEEEEec
Q 002990 718 DSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLH-------------PTVIKILRTHARLQRLVYISC 784 (860)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~-------------~~vi~~lr~~~~~~rlVYVSC 784 (860)
. +.|+||+|||..+-+ ..++..+..+..+..++|++|
T Consensus 607 ----------------------------~--~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 607 ----------------------------E--QFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred ----------------------------C--CcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 0 138999999975432 345566555667899999999
Q ss_pred CchhhHHHHHHh
Q 002990 785 NPETLVANAIEL 796 (860)
Q Consensus 785 np~tl~rD~~~L 796 (860)
++..+.++...+
T Consensus 657 ~~~~~~~~~~~~ 668 (702)
T PRK11783 657 NKRGFKMDEEGL 668 (702)
T ss_pred CCccCChhHHHH
Confidence 999988886555
No 15
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.33 E-value=1.1e-11 Score=124.88 Aligned_cols=86 Identities=30% Similarity=0.407 Sum_probs=73.5
Q ss_pred eEEEEcCCCcccCCHH-HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHH
Q 002990 569 LRFCISPTAFFQVNTL-AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 569 l~f~isp~sFFQvN~~-~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~--~VigVEis~~AIe~Ar~NA~~ 645 (860)
++|...|+.|.+.... .++.|.+.+... .+.+|||+|||+|.+++.+++... +|+++|+++.|++.|++|++.
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 5789999999988875 444555555543 567899999999999999999864 599999999999999999999
Q ss_pred cCCCcEEEEEccH
Q 002990 646 NGIKNCRFVCAKA 658 (860)
Q Consensus 646 Ngi~Nv~fi~gDa 658 (860)
|++++++++.+|+
T Consensus 78 n~~~~v~~~~~d~ 90 (170)
T PF05175_consen 78 NGLENVEVVQSDL 90 (170)
T ss_dssp TTCTTEEEEESST
T ss_pred cCccccccccccc
Confidence 9998899999885
No 16
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=2.7e-11 Score=133.35 Aligned_cols=94 Identities=20% Similarity=0.330 Sum_probs=77.3
Q ss_pred ECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHH
Q 002990 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 566 i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA 643 (860)
+.|+.|.++|..|+ +++...+.+...+..++......+|||+|||+|.+++.++... .+|+|+|+++.|++.|++|+
T Consensus 99 F~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 99 FCGLEFYVDERVLV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred EcCcEEEECCCCcC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 36789999999999 7777766666555445432223689999999999999999874 59999999999999999999
Q ss_pred HHcCCC-cEEEEEccHHH
Q 002990 644 EINGIK-NCRFVCAKAED 660 (860)
Q Consensus 644 ~~Ngi~-Nv~fi~gDae~ 660 (860)
+.+++. +++|+++|+.+
T Consensus 178 ~~~~l~~~i~~~~~D~~~ 195 (307)
T PRK11805 178 ERHGLEDRVTLIESDLFA 195 (307)
T ss_pred HHhCCCCcEEEEECchhh
Confidence 999985 69999999744
No 17
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.30 E-value=6.3e-11 Score=134.57 Aligned_cols=97 Identities=10% Similarity=0.194 Sum_probs=73.0
Q ss_pred EEEEECCeEEEEcCCC-----cccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHH
Q 002990 562 IHDSISNLRFCISPTA-----FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASA 635 (860)
Q Consensus 562 i~E~i~gl~f~isp~s-----FFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~A 635 (860)
+.-.-.|++|.+.... ||=-..... . .+..+ .++.+|||+|||+|.+++.++.. +.+|++||+++.|
T Consensus 183 ~~v~E~g~~f~vdl~~g~ktG~flDqr~~R-~---~~~~~---~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~a 255 (396)
T PRK15128 183 LPIEEHGMKLLVDIQGGHKTGYYLDQRDSR-L---ATRRY---VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEA 255 (396)
T ss_pred EEEEECCEEEEEecccccccCcChhhHHHH-H---HHHHh---cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHH
Confidence 3334489999998753 442212111 1 12222 34689999999999999987665 4699999999999
Q ss_pred HHHHHHHHHHcCCC--cEEEEEccHHHHHHHH
Q 002990 636 VSDAHRNAEINGIK--NCRFVCAKAEDVMGSL 665 (860)
Q Consensus 636 Ie~Ar~NA~~Ngi~--Nv~fi~gDae~~~~~l 665 (860)
++.|++|++.||+. +++|+++|+.+++..+
T Consensus 256 l~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 256 LDIARQNVELNKLDLSKAEFVRDDVFKLLRTY 287 (396)
T ss_pred HHHHHHHHHHcCCCCCcEEEEEccHHHHHHHH
Confidence 99999999999985 7999999999887654
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.26 E-value=2.4e-11 Score=119.78 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=70.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
....-+|||+|||+.+++++|+++|+++ .|..+.+.+ ++++|||||+|.++|+|++||+.|||..+.|+.|+|..
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4445689999999999999999999999 555555554 46799999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|.+++.
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876644
No 19
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.25 E-value=1.4e-10 Score=119.33 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCcccC-CHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHH
Q 002990 567 SNLRFCISPTAFFQV-NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 567 ~gl~f~isp~sFFQv-N~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~ 644 (860)
.|..+...+..+-.. ....-+.+++.+... -.+.+|||||||+|.+|+.++.++ .+|++||.++.+++.+++|++
T Consensus 17 kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~---~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~ 93 (189)
T TIGR00095 17 GGRLLKLPPGGSTRPTTRVVRELFFNILRPE---IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLA 93 (189)
T ss_pred CCcccCCCCCCCCCCchHHHHHHHHHHHHHh---cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 344454444444332 233444555555432 246789999999999999999885 599999999999999999999
Q ss_pred HcCCC-cEEEEEccHHHHHHH
Q 002990 645 INGIK-NCRFVCAKAEDVMGS 664 (860)
Q Consensus 645 ~Ngi~-Nv~fi~gDae~~~~~ 664 (860)
.+++. +++++++|+.+.+..
T Consensus 94 ~~~~~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 94 LLKSGEQAEVVRNSALRALKF 114 (189)
T ss_pred HhCCcccEEEEehhHHHHHHH
Confidence 99995 799999999877654
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=1.2e-11 Score=137.26 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=72.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCH--HHHHHHHHHHcCCccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESV--EQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~--Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
...+.+||||||++.+++++|+..|.+| .|..+.+.+..+||||||+|.++ +++++||+.|||.+|+|+.|+|..|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4556899999999999999999999999 55556666545699999999988 78999999999999999999999999
Q ss_pred CCCccc
Q 002990 239 PRSFDK 244 (860)
Q Consensus 239 pk~~~k 244 (860)
|.-+.+
T Consensus 87 P~YLeR 92 (759)
T PLN03213 87 EHYLAR 92 (759)
T ss_pred HHHHHH
Confidence 886654
No 21
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.25 E-value=1.7e-11 Score=127.86 Aligned_cols=99 Identities=18% Similarity=0.308 Sum_probs=85.3
Q ss_pred EEEEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC---EEEEEeCCHHHHHH
Q 002990 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSD 638 (860)
Q Consensus 562 i~E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~---~VigVEis~~AIe~ 638 (860)
+.+...++.|.-.|.+|++.++.....++..+.+++.+.++.+|||+|||+|.++..|++.+. +|++||+++.+++.
T Consensus 38 ~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~ 117 (215)
T TIGR00080 38 VPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEK 117 (215)
T ss_pred CCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 333344566777888888888877788888888888889999999999999999999998865 49999999999999
Q ss_pred HHHHHHHcCCCcEEEEEccHHH
Q 002990 639 AHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 639 Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
|++|++.+|++|++++++|+.+
T Consensus 118 A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 118 AERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHCCCCCeEEEECCccc
Confidence 9999999999999999998743
No 22
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.20 E-value=2.6e-10 Score=128.67 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=76.0
Q ss_pred EECCeEEEEcCC-----CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHH
Q 002990 565 SISNLRFCISPT-----AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSD 638 (860)
Q Consensus 565 ~i~gl~f~isp~-----sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~ 638 (860)
.-.|.+|.+... .||--..... ..+.+++ .|.+|||+||-||.+++.+|..++ +|++||+|..+++.
T Consensus 183 ~E~g~kf~v~~~~g~kTGfFlDqR~~R----~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~ 255 (393)
T COG1092 183 EENGVKFLVDLVDGLKTGFFLDQRDNR----RALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEW 255 (393)
T ss_pred EeCCeEEEEecCCcccceeeHHhHHHH----HHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHH
Confidence 347889998874 5553322222 2233332 388999999999999999999765 99999999999999
Q ss_pred HHHHHHHcCCC--cEEEEEccHHHHHHHHhh
Q 002990 639 AHRNAEINGIK--NCRFVCAKAEDVMGSLLK 667 (860)
Q Consensus 639 Ar~NA~~Ngi~--Nv~fi~gDae~~~~~l~~ 667 (860)
|++|++.||++ .+.|+++|+.++|..+.+
T Consensus 256 a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~ 286 (393)
T COG1092 256 ARENAELNGLDGDRHRFIVGDVFKWLRKAER 286 (393)
T ss_pred HHHHHHhcCCCccceeeehhhHHHHHHHHHh
Confidence 99999999994 589999999999887643
No 23
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.19 E-value=4.9e-11 Score=100.66 Aligned_cols=66 Identities=29% Similarity=0.475 Sum_probs=58.4
Q ss_pred EEEeCCCcccCHHHHHHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 002990 168 KCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~ 233 (860)
|||+|||..+++++|+++|+++| +....+.. +++++||||+|.+.++|++|++.|||+.|+|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999994 43444444 46689999999999999999999999999999986
No 24
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.18 E-value=4.8e-10 Score=122.02 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=72.0
Q ss_pred EEEEECCeEEEEcCC-----CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHH
Q 002990 562 IHDSISNLRFCISPT-----AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASA 635 (860)
Q Consensus 562 i~E~i~gl~f~isp~-----sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~A 635 (860)
+.-...|++|.+... .||--...... ++..+ ..+.+|||+||-||.+++.++..+ .+|++||+|..|
T Consensus 86 ~~v~E~gl~f~v~l~~gqktGlFlDqR~nR~----~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~a 158 (286)
T PF10672_consen 86 FTVEENGLKFRVDLTDGQKTGLFLDQRENRK----WVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRA 158 (286)
T ss_dssp EEEEETTEEEEEESSSSSSTSS-GGGHHHHH----HHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHH
T ss_pred eEEEECCEEEEEEcCCCCcceEcHHHHhhHH----HHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHH
Confidence 333458999999983 55544333332 23333 247899999999999999988765 689999999999
Q ss_pred HHHHHHHHHHcCCC--cEEEEEccHHHHHHHH
Q 002990 636 VSDAHRNAEINGIK--NCRFVCAKAEDVMGSL 665 (860)
Q Consensus 636 Ie~Ar~NA~~Ngi~--Nv~fi~gDae~~~~~l 665 (860)
++.|++|+..||++ .++|+++|+.+++..+
T Consensus 159 l~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 159 LEWAKENAALNGLDLDRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp HHHHHHHHHHTT-CCTCEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceEEEecCHHHHHHHH
Confidence 99999999999984 7999999999988764
No 25
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.18 E-value=3.2e-10 Score=127.78 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=57.4
Q ss_pred CcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 603 TLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
-+|||++||+|.+|+.+++. +.+|+++|+++.|++.+++|++.|++.+++++++|+..++..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~ 110 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY 110 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH
Confidence 48999999999999999986 379999999999999999999999999999999999887653
No 26
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5.8e-11 Score=127.22 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=70.3
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcccee-EEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILY-KSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~-~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~ 241 (860)
.-+|||-|||+.+-+-||+.+|+++|... +.|.- +.|||||||||++.+++++|-++|||..+.||+|.|+.|.+|-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 45799999999999999999999995543 44444 6789999999999999999999999999999999999999985
Q ss_pred ccc
Q 002990 242 FDK 244 (860)
Q Consensus 242 ~~k 244 (860)
.-|
T Consensus 176 ~n~ 178 (376)
T KOG0125|consen 176 HNK 178 (376)
T ss_pred ccC
Confidence 543
No 27
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.17 E-value=2.2e-10 Score=123.50 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=58.8
Q ss_pred hccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 596 ~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.+.++.+|||+|||+|..++.++... +.|+|+|+++.+++.+++|++.+|+.|+.++++|+..
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~ 133 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRV 133 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHH
Confidence 3456788999999999999999998864 5899999999999999999999999999999999764
No 28
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=8.8e-11 Score=135.06 Aligned_cols=69 Identities=20% Similarity=0.392 Sum_probs=61.4
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+..++.+.++.+|||+|||+|..++.++... ++|+|+|+++.+++.+++|++.+|+.||+++++|+.++
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~ 315 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNL 315 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhc
Confidence 4445567788999999999999999999864 58999999999999999999999999999999997653
No 29
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.16 E-value=3.1e-10 Score=116.18 Aligned_cols=140 Identities=20% Similarity=0.261 Sum_probs=97.5
Q ss_pred CeEEEEcCCCccc-CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHH
Q 002990 568 NLRFCISPTAFFQ-VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 568 gl~f~isp~sFFQ-vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~ 645 (860)
|.++...+..... +-...-+.|++++... . -.+.++||||||||.+|+.+.++ +++|+.||.++.+++.+++|++.
T Consensus 10 gr~l~~p~~~~~RPT~drvrealFniL~~~-~-~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~ 87 (183)
T PF03602_consen 10 GRKLKTPKGDNTRPTTDRVREALFNILQPR-N-LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEK 87 (183)
T ss_dssp T-EEE-TT--TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred CCEecCCCCCCcCCCcHHHHHHHHHHhccc-c-cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3444444433322 3356677788877765 2 35789999999999999977655 58999999999999999999999
Q ss_pred cCCCc-EEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q 002990 646 NGIKN-CRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEG 724 (860)
Q Consensus 646 Ngi~N-v~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 724 (860)
.++.+ +.++++|+...+..+....
T Consensus 88 l~~~~~~~v~~~d~~~~l~~~~~~~------------------------------------------------------- 112 (183)
T PF03602_consen 88 LGLEDKIRVIKGDAFKFLLKLAKKG------------------------------------------------------- 112 (183)
T ss_dssp HT-GGGEEEEESSHHHHHHHHHHCT-------------------------------------------------------
T ss_pred hCCCcceeeeccCHHHHHHhhcccC-------------------------------------------------------
Confidence 99975 9999999998877653210
Q ss_pred CCCCCccccccccccCCCCCCCCCCccEEEEcCC-CCCCc-HHHHHHHHh--ccCCCeEEEEecCch
Q 002990 725 SGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPP-RGGLH-PTVIKILRT--HARLQRLVYISCNPE 787 (860)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPP-R~Gl~-~~vi~~lr~--~~~~~rlVYVSCnp~ 787 (860)
.+.|+|++||| ..++. ..++..|.. ......+|++-++..
T Consensus 113 -----------------------~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 113 -----------------------EKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -----------------------S-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred -----------------------CCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 12489999999 55664 888999873 345679999999775
No 30
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.14 E-value=4.1e-10 Score=119.68 Aligned_cols=71 Identities=24% Similarity=0.461 Sum_probs=62.4
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMG 663 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~~~ 663 (860)
+..|+.+....+|||||||+|.+++.+|++. .+|+|||+.+.|++.|++|.+.|++ ++++++++|+.++..
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK 109 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence 4455566668899999999999999999884 6999999999999999999999999 579999999887643
No 31
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.14 E-value=1.1e-10 Score=129.36 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=69.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..++.|||+|||..+++++|+++|++| .|..+++.+ ++++|||||+|.+.|+|.+||+.|||+.+.||.|+|..+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 345679999999999999999999999 566666664 568999999999999999999999999999999999988
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
..|.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 6553
No 32
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=2.7e-10 Score=131.36 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=59.3
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+.++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.+++|++.+|+.++.++++|+.+
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~ 312 (444)
T PRK14902 244 PALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARK 312 (444)
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccc
Confidence 34456778899999999999999999863 6999999999999999999999999999999999765
No 33
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.13 E-value=1.8e-10 Score=125.37 Aligned_cols=94 Identities=22% Similarity=0.316 Sum_probs=78.0
Q ss_pred EECCeEEEEcCCCcccCCHHHHHHHHHHHhhhcc-CCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHH
Q 002990 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 565 ~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~ 641 (860)
.+.|+.|.+++..|. +...++.|+..+.+.+. ..+..+|||+|||+|.+++.++... .+|+|+|+++.|++.|++
T Consensus 79 ~f~g~~f~v~~~vli--Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~ 156 (284)
T TIGR00536 79 EFYGLEFFVNEHVLI--PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE 156 (284)
T ss_pred eEcCeEEEECCCCcC--CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 346889999999997 55677788877765432 2223689999999999999999875 599999999999999999
Q ss_pred HHHHcCCCc-EEEEEccHHH
Q 002990 642 NAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 642 NA~~Ngi~N-v~fi~gDae~ 660 (860)
|++.+++.+ +.|+++|+.+
T Consensus 157 n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 157 NAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred HHHHcCCCCcEEEEECchhc
Confidence 999999964 9999998643
No 34
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.6e-10 Score=125.69 Aligned_cols=93 Identities=23% Similarity=0.270 Sum_probs=75.5
Q ss_pred EECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC--EEEEEeCCHHHHHHHHHH
Q 002990 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 565 ~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~--~VigVEis~~AIe~Ar~N 642 (860)
.+.|++|.+++..+.. ..-++.|+..+......... +|||||||+|.+++.++..+. .|+|+|+|+.|++.|++|
T Consensus 77 ~f~gl~~~v~~~vliP--r~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 77 EFGGLRFKVDEGVLIP--RPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred eecceeeeeCCCceec--CCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH
Confidence 4578999999999965 45566777766533332222 799999999999999999875 999999999999999999
Q ss_pred HHHcCCCcEEEEEccHHH
Q 002990 643 AEINGIKNCRFVCAKAED 660 (860)
Q Consensus 643 A~~Ngi~Nv~fi~gDae~ 660 (860)
|+.||+.++.++.+|..+
T Consensus 154 a~~~~l~~~~~~~~dlf~ 171 (280)
T COG2890 154 AERNGLVRVLVVQSDLFE 171 (280)
T ss_pred HHHcCCccEEEEeeeccc
Confidence 999999778888776443
No 35
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.13 E-value=2.5e-10 Score=106.43 Aligned_cols=61 Identities=30% Similarity=0.472 Sum_probs=56.9
Q ss_pred CCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVM 662 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~~ 662 (860)
|.+|||+|||+|++++.+++.. .+++|+|+++.+++.|+.|+..+++ .+++++++|+.+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch
Confidence 4689999999999999999998 9999999999999999999999998 58999999998764
No 36
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.13 E-value=7.3e-10 Score=125.62 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=78.7
Q ss_pred EECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHH
Q 002990 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 565 ~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~N 642 (860)
.+.|++|.+.|+.|+ ++..++.|++.+...+ .++.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.|++|
T Consensus 219 ~F~G~~f~V~p~vLI--PRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 219 EFYGRRFAVNPNVLI--PRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN 294 (423)
T ss_pred eecCcEEEeCCCccC--CCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 357899999999997 6788889998887664 34568999999999999999875 46999999999999999999
Q ss_pred HHHcCCCcEEEEEccHHH
Q 002990 643 AEINGIKNCRFVCAKAED 660 (860)
Q Consensus 643 A~~Ngi~Nv~fi~gDae~ 660 (860)
++.+++ +++|+++|+.+
T Consensus 295 a~~~g~-rV~fi~gDl~e 311 (423)
T PRK14966 295 AADLGA-RVEFAHGSWFD 311 (423)
T ss_pred HHHcCC-cEEEEEcchhc
Confidence 999987 79999998643
No 37
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=7.2e-10 Score=112.53 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 581 vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+-...+..++..+. .-+.-.+.+|+|||||||.+++.++-.+ .+|+|||++++|++.|+.|+.. +..++.|+++|+.
T Consensus 26 Tp~~~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~ 103 (198)
T COG2263 26 TPAPLAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVS 103 (198)
T ss_pred CChHHHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchh
Confidence 33455656655554 3344567789999999999999998876 7999999999999999999999 4458999999976
Q ss_pred H
Q 002990 660 D 660 (860)
Q Consensus 660 ~ 660 (860)
+
T Consensus 104 ~ 104 (198)
T COG2263 104 D 104 (198)
T ss_pred h
Confidence 5
No 38
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.06 E-value=2.5e-09 Score=112.93 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=75.2
Q ss_pred ECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHH
Q 002990 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 566 i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA 643 (860)
+.+..|.+++..|.. ...++.++..+.+.+. ..+.+|||+|||+|.+++.++... .+|+|+|+++.+++.|+.|+
T Consensus 55 ~~~~~~~~~~~~~~p--~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 55 FYGLDFKVSPGVLIP--RPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA 131 (251)
T ss_pred EeceEEEECCCcccC--CCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 456788899888864 3445566666666654 234589999999999999999873 59999999999999999999
Q ss_pred HHcCCCcEEEEEccHHH
Q 002990 644 EINGIKNCRFVCAKAED 660 (860)
Q Consensus 644 ~~Ngi~Nv~fi~gDae~ 660 (860)
+.+++.++.++++|+.+
T Consensus 132 ~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 132 ARLGLDNVTFLQSDWFE 148 (251)
T ss_pred HHcCCCeEEEEECchhc
Confidence 99999899999998643
No 39
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.05 E-value=4.4e-10 Score=124.76 Aligned_cols=77 Identities=23% Similarity=0.389 Sum_probs=67.8
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||..+++++|+++|+++ .|..+++++ ++++|||||+|.+.|+|++||+.|||..+.|++|+|..++|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4579999999999999999999999 455555543 56889999999999999999999999999999999998876
Q ss_pred CC
Q 002990 240 RS 241 (860)
Q Consensus 240 k~ 241 (860)
+.
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 43
No 40
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=1.3e-09 Score=125.96 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=58.4
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+.++.+|||+|||+|..++.+++.. ++|+|+|+++.+++.+++|++.+|+.+++++++|+.+
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~ 312 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARS 312 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc
Confidence 34456778899999999999999998753 6899999999999999999999999999999998754
No 41
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.04 E-value=3.3e-09 Score=109.99 Aligned_cols=118 Identities=18% Similarity=0.294 Sum_probs=92.8
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCcccccc
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~ 678 (860)
.+.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+..+++.|+.|+++|+.+.+...+..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~---------- 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPD---------- 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCc----------
Confidence 46789999999999999998874 589999999999999999999999999999999984333321100
Q ss_pred ccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEc--
Q 002990 679 HASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVD-- 756 (860)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvD-- 756 (860)
..| |+++++
T Consensus 110 -------------------------------------------------------------------~~~--D~V~~~~~ 120 (202)
T PRK00121 110 -------------------------------------------------------------------GSL--DRIYLNFP 120 (202)
T ss_pred -------------------------------------------------------------------ccc--ceEEEECC
Confidence 012 455553
Q ss_pred -CCCC-------CCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhc
Q 002990 757 -PPRG-------GLHPTVIKILRTHARLQRLVYISCNPETLVANAIELC 797 (860)
Q Consensus 757 -PPR~-------Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~ 797 (860)
|... .....+++.+....++..++|++|+...+++++++.+
T Consensus 121 ~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~ 169 (202)
T PRK00121 121 DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVL 169 (202)
T ss_pred CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 3321 2346788888877889999999999999999998876
No 42
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.04 E-value=3.7e-09 Score=107.97 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=74.0
Q ss_pred CeEEEEcCC-CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHH
Q 002990 568 NLRFCISPT-AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 568 gl~f~isp~-sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~ 645 (860)
|..+...+. ..-.+-...-+.|++++... --.+.++||||+|+|.+|+.++.+ +.+|+.||.+..++..+++|++.
T Consensus 11 gr~L~~p~~~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 11 GRKLKTPDGPGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred CCcccCCCCCCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 344444443 23334456677777777652 135789999999999999998877 68999999999999999999999
Q ss_pred cCC-CcEEEEEccHHHHHHHH
Q 002990 646 NGI-KNCRFVCAKAEDVMGSL 665 (860)
Q Consensus 646 Ngi-~Nv~fi~gDae~~~~~l 665 (860)
.++ .++.++..|+..++.++
T Consensus 89 l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 89 LGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred hCCccceEEEeecHHHHHHhc
Confidence 996 57999999998665543
No 43
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=2.2e-09 Score=123.43 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=60.1
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
.++++.++.+|||+|||+|..++.++... .+|+|+|+++.+++.+++|++..|+.+++++++|+.++
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l 300 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL 300 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh
Confidence 34567788999999999999999999863 69999999999999999999999999999999998653
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.04 E-value=7e-10 Score=124.02 Aligned_cols=78 Identities=23% Similarity=0.303 Sum_probs=68.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++ .|..+++.+ ++++|||||+|.++|+|++||+.|||..+.|++|+|..
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 4556789999999999999999999999 555566543 56889999999999999999999999999999999987
Q ss_pred cCC
Q 002990 237 VVP 239 (860)
Q Consensus 237 A~p 239 (860)
|.|
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 755
No 45
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.02 E-value=3e-09 Score=109.63 Aligned_cols=75 Identities=24% Similarity=0.446 Sum_probs=63.7
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVM 662 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~~ 662 (860)
.+...++..+.+.++.+|||+|||+|.+++.+++.. .+|++||+++.+++.|++|++.+++ .++.++++|+.+.+
T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence 344444556678889999999999999999998753 6899999999999999999999995 78999999987654
No 46
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.00 E-value=1e-09 Score=110.20 Aligned_cols=62 Identities=27% Similarity=0.554 Sum_probs=52.7
Q ss_pred CcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHHH
Q 002990 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGS 664 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~~~~ 664 (860)
++|||+|||.|.-++.+|+.+.+|+|||+++..++.|+.||+..|+ ++|+|++||+.+++..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~ 63 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR 63 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh
Confidence 3699999999999999999999999999999999999999999997 5899999999886543
No 47
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.00 E-value=6.5e-09 Score=106.80 Aligned_cols=71 Identities=32% Similarity=0.444 Sum_probs=62.1
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
.+..++.+.++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|++.+++.+++++++|+.+.+
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~ 103 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECL 103 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHH
Confidence 34556667788899999999999999998653 799999999999999999999999999999999987643
No 48
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.99 E-value=1.2e-09 Score=93.27 Aligned_cols=66 Identities=27% Similarity=0.435 Sum_probs=54.9
Q ss_pred EEEeCCCcccCHHHHHHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 002990 168 KCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~ 233 (860)
|||+|||+.++.++|+++|+.++ |....+.+ ++++++|||+|.++++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999995 33333333 24579999999999999999999999999999985
No 49
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.97 E-value=7e-09 Score=115.95 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=71.3
Q ss_pred ECCeEEEEcCCCcccCCHHHH-HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHH
Q 002990 566 ISNLRFCISPTAFFQVNTLAA-EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 566 i~gl~f~isp~sFFQvN~~~a-e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~N 642 (860)
+.++.+...|+.|+|.+.... +.|++.+.. ....+|||||||+|.+++.+++.. .+|+++|+++.|++.|+.|
T Consensus 164 ~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~n 239 (342)
T PRK09489 164 VDGLTVKTLPGVFSRDGLDVGSQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRAT 239 (342)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 467899999999999987655 444444432 223479999999999999999875 4899999999999999999
Q ss_pred HHHcCCCcEEEEEccH
Q 002990 643 AEINGIKNCRFVCAKA 658 (860)
Q Consensus 643 A~~Ngi~Nv~fi~gDa 658 (860)
++.|++. .+++.+|+
T Consensus 240 l~~n~l~-~~~~~~D~ 254 (342)
T PRK09489 240 LAANGLE-GEVFASNV 254 (342)
T ss_pred HHHcCCC-CEEEEccc
Confidence 9999985 56777664
No 50
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.97 E-value=8.4e-09 Score=106.17 Aligned_cols=118 Identities=19% Similarity=0.390 Sum_probs=94.1
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCcccccc
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~ 678 (860)
...+|||||||+|.+++.+|+.. ..|+|||+++.+++.|++++..+++.|+.++++|+.++...++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~---------- 85 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPD---------- 85 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCC----------
Confidence 45689999999999999999874 589999999999999999999999999999999998865332100
Q ss_pred ccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCC
Q 002990 679 HASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPP 758 (860)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPP 758 (860)
..+ +.+++++|
T Consensus 86 -------------------------------------------------------------------~~~--d~v~~~~p 96 (194)
T TIGR00091 86 -------------------------------------------------------------------GSL--SKVFLNFP 96 (194)
T ss_pred -------------------------------------------------------------------Cce--eEEEEECC
Confidence 001 45666543
Q ss_pred ----------CCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhc
Q 002990 759 ----------RGGLHPTVIKILRTHARLQRLVYISCNPETLVANAIELC 797 (860)
Q Consensus 759 ----------R~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~ 797 (860)
|.-+.+.+++.+.+..++...+|++.+....+..+.+..
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~ 145 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVL 145 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 334457889988877889999999999998888876654
No 51
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.96 E-value=3.4e-09 Score=109.92 Aligned_cols=104 Identities=19% Similarity=0.347 Sum_probs=69.8
Q ss_pred cccccc-eEE-EEECCeEEEEcC-CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHh--hCCEEEEE
Q 002990 555 NDVVEA-RIH-DSISNLRFCISP-TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH--RVGMVIGI 629 (860)
Q Consensus 555 ~~~G~~-~i~-E~i~gl~f~isp-~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~--~~~~VigV 629 (860)
.++|++ +.+ -.-.|+.|.+.+ ..||.. ....|+. .+.+. ..++.+|+|+|||+|.|++.+|+ .++.|+|+
T Consensus 57 ~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~-rl~~Er~--Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~ 131 (200)
T PF02475_consen 57 VLAGEPRTETIHKENGIRFKVDLSKVYFSP-RLSTERR--RIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAV 131 (200)
T ss_dssp EEEES--SEEEEEETTEEEEEETTTS---G-GGHHHHH--HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEE
T ss_pred EEeCCCceEEEEEeCCEEEEEccceEEEcc-ccHHHHH--HHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEe
Confidence 446665 333 344899999998 455543 3333332 23333 45789999999999999999999 67899999
Q ss_pred eCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHHHH
Q 002990 630 EMNASAVSDAHRNAEINGIKN-CRFVCAKAEDVMG 663 (860)
Q Consensus 630 Eis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~~~~ 663 (860)
|++|.|++.+++|++.|++++ +..+++|+.+++.
T Consensus 132 d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 132 DLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp ES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred cCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 999999999999999999965 8999999877654
No 52
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.96 E-value=6.1e-09 Score=122.06 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=76.9
Q ss_pred EECCeEEEEcCCCcccCCHHHHHHHHHHHhhhcc------------------------CCCCCcEEeeccCCcHHHHHHH
Q 002990 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD------------------------LGPDTLLFDVCCGTGTIGLTLA 620 (860)
Q Consensus 565 ~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~------------------------l~~~~~VLDL~CGtG~i~L~LA 620 (860)
.+.|+.|.+.|+.+. -+..+|.|++.+++.+. .....+|||+|||+|.+++.++
T Consensus 80 ~F~g~~f~V~~~VLI--PRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 80 EFYSREFIVNKHVLI--PRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred EEcCcEEEeCCCccc--CCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 457899999999994 46778888887765432 1134589999999999999998
Q ss_pred hhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHH
Q 002990 621 HRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAE 659 (860)
Q Consensus 621 ~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae 659 (860)
... .+|+|+|+|+.|++.|+.|++.+++. ++.++.+|+.
T Consensus 158 ~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~ 199 (506)
T PRK01544 158 CELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWF 199 (506)
T ss_pred HHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchh
Confidence 763 69999999999999999999999984 6999999864
No 53
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.94 E-value=2.4e-09 Score=105.40 Aligned_cols=61 Identities=26% Similarity=0.512 Sum_probs=54.7
Q ss_pred CCCCcEEeeccCCcHHHHHHHh-h--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAH-R--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~-~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+.+|||||||+|.+++.|+. . ..+|+|||+++.||+.|+.+++.++++|++|+++|+.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~ 65 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED 65 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc
Confidence 4578999999999999999994 3 47999999999999999999999999999999999765
No 54
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.94 E-value=5.3e-09 Score=116.19 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=61.6
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+..++.+.++.+|||+|||+|++++.++..+..|+|+|+++.|++.|+.|++.+|+.++.++++|+.+
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~ 241 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK 241 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc
Confidence 3344455677888999999999999999988889999999999999999999999999889999998754
No 55
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=6.3e-09 Score=119.60 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=58.1
Q ss_pred hhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 594 ~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..++.+.++.+|||+|||+|..++.++... .+|+|+|+++.+++.+++|++.+|+. +.++++|+.+
T Consensus 237 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~ 304 (427)
T PRK10901 237 ATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARD 304 (427)
T ss_pred HHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCccc
Confidence 334566788999999999999999999875 49999999999999999999999985 7899998764
No 56
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.93 E-value=5.2e-09 Score=96.69 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=53.2
Q ss_pred CCCcEEeeccCCcHHHHHHHh--hCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAH--RVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKA 658 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~--~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDa 658 (860)
++.+|||||||+|.+++.+++ ...+|+|||+++.+++.|++|+...+. ++++|+++|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 467899999999999999999 678999999999999999999976665 7899999997
No 57
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.92 E-value=8.2e-09 Score=116.59 Aligned_cols=87 Identities=22% Similarity=0.338 Sum_probs=67.3
Q ss_pred eEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHc
Q 002990 569 LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 569 l~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~N 646 (860)
+.|.-.|+.|.......-..++ ++++....+.+|||||||+|.+++.+++.. .+|++||+|+.|++.|++|++.|
T Consensus 199 ~~~~~~~gVFs~~~LD~Gtrll---L~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n 275 (378)
T PRK15001 199 WTIHNHANVFSRTGLDIGARFF---MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN 275 (378)
T ss_pred EEEEecCCccCCCCcChHHHHH---HHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 4555568999987665433332 233333334689999999999999999874 69999999999999999999999
Q ss_pred CC---CcEEEEEccH
Q 002990 647 GI---KNCRFVCAKA 658 (860)
Q Consensus 647 gi---~Nv~fi~gDa 658 (860)
+. .+++|+.+|+
T Consensus 276 ~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 276 MPEALDRCEFMINNA 290 (378)
T ss_pred CcccCceEEEEEccc
Confidence 75 3789988875
No 58
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.92 E-value=2.9e-09 Score=125.79 Aligned_cols=77 Identities=12% Similarity=0.252 Sum_probs=68.3
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||..+++++|+++|+.| .|..+++.+ ++++|||||.|.+.++|.+||+.|||++|+|+.|+|..|.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 4589999999999999999999999 555555554 46789999999999999999999999999999999998876
Q ss_pred CC
Q 002990 240 RS 241 (860)
Q Consensus 240 k~ 241 (860)
.+
T Consensus 284 pP 285 (612)
T TIGR01645 284 PP 285 (612)
T ss_pred Cc
Confidence 54
No 59
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.2e-09 Score=119.07 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=69.1
Q ss_pred CCCCC-CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccC-C
Q 002990 157 DGDGD-QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIG-N 229 (860)
Q Consensus 157 d~~~~-~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k-G 229 (860)
+|++. ...+..||||.||+++.+++|.-||++. .|-..++++ +.+||||||||.+.|+|++||+.||+++|+ |
T Consensus 74 ~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G 153 (506)
T KOG0117|consen 74 GWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG 153 (506)
T ss_pred cccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCC
Confidence 44443 3347899999999999999999999999 455556666 678999999999999999999999999996 8
Q ss_pred ceeEEEecC
Q 002990 230 KTLKVANVV 238 (860)
Q Consensus 230 r~L~V~~A~ 238 (860)
|.|.|....
T Consensus 154 K~igvc~Sv 162 (506)
T KOG0117|consen 154 KLLGVCVSV 162 (506)
T ss_pred CEeEEEEee
Confidence 999987653
No 60
>PRK14967 putative methyltransferase; Provisional
Probab=98.90 E-value=2.5e-08 Score=104.71 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHc
Q 002990 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 568 gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~N 646 (860)
++.+...++.|.... ..+.|...+.. ..+.++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|++.+
T Consensus 6 ~~~~~~~~g~~~p~~--ds~~l~~~l~~-~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~ 82 (223)
T PRK14967 6 PDALLRAPGVYRPQE--DTQLLADALAA-EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA 82 (223)
T ss_pred CceeecCCCCcCCCC--cHHHHHHHHHh-cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 455666776665433 23445544433 345677899999999999999999865 49999999999999999999999
Q ss_pred CCCcEEEEEccHHH
Q 002990 647 GIKNCRFVCAKAED 660 (860)
Q Consensus 647 gi~Nv~fi~gDae~ 660 (860)
++ ++.++.+|+.+
T Consensus 83 ~~-~~~~~~~d~~~ 95 (223)
T PRK14967 83 GV-DVDVRRGDWAR 95 (223)
T ss_pred CC-eeEEEECchhh
Confidence 87 68999988654
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.89 E-value=1.2e-08 Score=109.56 Aligned_cols=91 Identities=23% Similarity=0.271 Sum_probs=75.0
Q ss_pred ECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHH
Q 002990 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 566 i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA 643 (860)
+.+..|.+++..|. ....++.+++.+.......++.+|||+|||+|.+++.++... .+|+|+|+++.+++.|++|+
T Consensus 75 f~~~~~~~~~~~li--pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 75 FWGLDFKVSPGVLI--PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred EcCcEEEECCCcee--CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 45678999998884 345566777777765555677899999999999999999886 79999999999999999999
Q ss_pred HHcCCCcEEEEEccH
Q 002990 644 EINGIKNCRFVCAKA 658 (860)
Q Consensus 644 ~~Ngi~Nv~fi~gDa 658 (860)
......++.|+.+|+
T Consensus 153 ~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 153 KHGLGARVEFLQGDW 167 (275)
T ss_pred HhCCCCcEEEEEccc
Confidence 844446899999986
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.88 E-value=6.3e-09 Score=110.80 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=63.4
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.+|||+|||+.+++++|++||+.+ .|..+.+.. +.++|||||+|.++++++.|| .|||..+.|+.|+|..+.
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 479999999999999999999999 555555554 346799999999999999999 599999999999999874
No 63
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.88 E-value=2.7e-08 Score=101.65 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=55.0
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.+|||+|||+|.+++.++... .+|+|||.++.|++.|++|++.++++|++++++|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~ 103 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED 103 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh
Confidence 36799999999999999998654 6899999999999999999999999899999999876
No 64
>smart00362 RRM_2 RNA recognition motif.
Probab=98.87 E-value=8.7e-09 Score=85.46 Aligned_cols=69 Identities=30% Similarity=0.498 Sum_probs=59.1
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
+|+|+|||..++.++|+++|.++| +....+.. +.++|+|||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999995 44443333 2356999999999999999999999999999999873
No 65
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.87 E-value=4.3e-09 Score=107.37 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC-----------EEEEEeCCHHHHHHHHHHHHHcCCC-cEEE
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-----------MVIGIEMNASAVSDAHRNAEINGIK-NCRF 653 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-----------~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~f 653 (860)
.+.|...++.++.+.++..|||.+||+|+|.+..+..+. +++|+|+++.+++.|+.|++..|+. .+.|
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~ 92 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDF 92 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEE
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEE
Confidence 344444455566778889999999999999999876542 2789999999999999999999985 5899
Q ss_pred EEccHHH
Q 002990 654 VCAKAED 660 (860)
Q Consensus 654 i~gDae~ 660 (860)
.+.|+.+
T Consensus 93 ~~~D~~~ 99 (179)
T PF01170_consen 93 IQWDARE 99 (179)
T ss_dssp EE--GGG
T ss_pred Eecchhh
Confidence 9988765
No 66
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.86 E-value=1.3e-08 Score=112.59 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=52.5
Q ss_pred CCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ng-----i~Nv~fi~gDae~ 660 (860)
++.+|||+|||+|.+++.|++.+.+|+|+|+++.|++.|++|++..+ ..++.|.++|+++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 46799999999999999999998899999999999999999988652 3468899888643
No 67
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.86 E-value=2.1e-08 Score=110.02 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=70.3
Q ss_pred cCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcC-CCcEE
Q 002990 574 SPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING-IKNCR 652 (860)
Q Consensus 574 sp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ng-i~Nv~ 652 (860)
.|.-.+-.|......++..+.+.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.+++++..++ ..+++
T Consensus 9 ~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ 88 (294)
T PTZ00338 9 VFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLE 88 (294)
T ss_pred CcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEE
Confidence 44333333444444555666667777888999999999999999999999999999999999999999998877 47899
Q ss_pred EEEccHHH
Q 002990 653 FVCAKAED 660 (860)
Q Consensus 653 fi~gDae~ 660 (860)
++++|+.+
T Consensus 89 ii~~Dal~ 96 (294)
T PTZ00338 89 VIEGDALK 96 (294)
T ss_pred EEECCHhh
Confidence 99999855
No 68
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.86 E-value=3e-08 Score=92.64 Aligned_cols=71 Identities=32% Similarity=0.404 Sum_probs=61.1
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
...+...+.+..+.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|++.+++.+++++.+|+..
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPE 80 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence 3445555666677899999999999999999874 5899999999999999999999999899999988653
No 69
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.84 E-value=1e-08 Score=121.51 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=69.9
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
..+.+|||+|||..+++++|+++|++| .|..+++.. ++++|||||+|.+.|+|.+|++.|||..++||+|.|..|+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 445679999999999999999999999 555566554 5788999999999999999999999999999999999997
Q ss_pred CCC
Q 002990 239 PRS 241 (860)
Q Consensus 239 pk~ 241 (860)
.+.
T Consensus 363 ~k~ 365 (562)
T TIGR01628 363 RKE 365 (562)
T ss_pred CcH
Confidence 653
No 70
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.7e-08 Score=108.11 Aligned_cols=88 Identities=25% Similarity=0.373 Sum_probs=70.3
Q ss_pred CCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHH
Q 002990 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 567 ~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~ 644 (860)
.+++|.-.|+.|.-.....-..|+ ++.+....+.+|||+|||.|.+|+.|++.. .+|+.+|+|..||+.|++|+.
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lL---l~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLL---LETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHH---HHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence 467888899999887765444432 223333444589999999999999999987 599999999999999999999
Q ss_pred HcCCCcEEEEEcc
Q 002990 645 INGIKNCRFVCAK 657 (860)
Q Consensus 645 ~Ngi~Nv~fi~gD 657 (860)
.|++++..++.+|
T Consensus 204 ~N~~~~~~v~~s~ 216 (300)
T COG2813 204 ANGVENTEVWASN 216 (300)
T ss_pred HcCCCccEEEEec
Confidence 9999987556554
No 71
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.84 E-value=9.2e-09 Score=115.10 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=66.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEec
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN--KTLKVANV 237 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG--r~L~V~~A 237 (860)
..+|||+|||+.+++++|+++|+++ .|..+++.. ++++|||||+|.+.|+|++||+.|||+.+.| +.|+|..|
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 4579999999999999999999999 455555543 4668999999999999999999999999977 58999988
Q ss_pred CCCCc
Q 002990 238 VPRSF 242 (860)
Q Consensus 238 ~pk~~ 242 (860)
..+..
T Consensus 273 ~~~~~ 277 (346)
T TIGR01659 273 EEHGK 277 (346)
T ss_pred Ccccc
Confidence 76533
No 72
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.84 E-value=4.3e-08 Score=99.90 Aligned_cols=71 Identities=25% Similarity=0.266 Sum_probs=61.5
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
.+...+..++.+.++.+|||+|||+|.+++.+++.. .+|+++|+++.+++.|++|++.+++.+++++++|+
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~ 90 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA 90 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc
Confidence 344455566667788899999999999999999875 59999999999999999999999998899999885
No 73
>smart00360 RRM RNA recognition motif.
Probab=98.81 E-value=1.2e-08 Score=84.16 Aligned_cols=66 Identities=29% Similarity=0.469 Sum_probs=57.5
Q ss_pred EeCCCcccCHHHHHHHhhhcc-ceeEEeecc----CCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 170 LVHLPRKWHSDNLKKFLADHG-ILYKSAKKK----KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 170 VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~----r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
|+|||..+++++|+++|+++| +....+... +++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999995 555555542 457999999999999999999999999999999873
No 74
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.81 E-value=2.8e-08 Score=114.30 Aligned_cols=66 Identities=11% Similarity=0.247 Sum_probs=54.7
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKA 658 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDa 658 (860)
+..++.+.++.+|||+|||+|..++.+++.. ++|+|+|+++.+++.+++|++.+|+. .+.++.+|+
T Consensus 230 ~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 230 VATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred HHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 3444567788999999999999999999875 69999999999999999999999986 233355553
No 75
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.6e-08 Score=105.28 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=67.3
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
..-.|.|-|||..+++.+|..||.++ .+.-+.+-+ +.++|||||+|.+.|+|.+||+.|||+-|..-.|+|..++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 34569999999999999999999999 333333333 7889999999999999999999999999999999999998
Q ss_pred CC
Q 002990 239 PR 240 (860)
Q Consensus 239 pk 240 (860)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 76
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=2.4e-08 Score=110.79 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=78.8
Q ss_pred CCeEEEEcC--CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCE-EEEEeCCHHHHHHHHHHH
Q 002990 567 SNLRFCISP--TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM-VIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 567 ~gl~f~isp--~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~-VigVEis~~AIe~Ar~NA 643 (860)
.|..|.+.+ --|...|...-.++.+.+. .|.+|||+|||+|.|++++|++++. |+|+|+||.|++.+++|+
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENI 231 (341)
T ss_pred CCEEEEEchHHeEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHH
Confidence 679999998 3455566666655554443 4899999999999999999998755 999999999999999999
Q ss_pred HHcCCCc-EEEEEccHHHHHHHH
Q 002990 644 EINGIKN-CRFVCAKAEDVMGSL 665 (860)
Q Consensus 644 ~~Ngi~N-v~fi~gDae~~~~~l 665 (860)
++|++.+ +..++||+.++.+.+
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~ 254 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPEL 254 (341)
T ss_pred HhcCccceeeEEeccHHHhhhcc
Confidence 9999987 999999999987764
No 77
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.78 E-value=1.2e-08 Score=120.67 Aligned_cols=74 Identities=18% Similarity=0.264 Sum_probs=65.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
....+|||+|||+.+++++|+++|.++ .|..+.+.+ ++++|||||+|.+.|+|++||+.|||..+.||.|+|..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 345689999999999999999999999 454455543 57899999999999999999999999999999999974
No 78
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.76 E-value=6.1e-08 Score=101.15 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhhcc--CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 584 LAAEKLYSLGGDWAD--LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~--l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
.+.+.++..+.+++. +.++.+|||+|||+|.++..++....+|+|||+++.|+..|++++..++. .++.|.++|+.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 345566666776665 55688999999999999999999888999999999999999999988877 589999998754
No 79
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.76 E-value=7.2e-08 Score=97.64 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=53.9
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+|||+|||+|.+++.++..+.+|+|+|+++.+++.|++|+..+++ +++++.+|+.+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 77 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFK 77 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccc
Confidence 4557899999999999999999888999999999999999999999987 68999988543
No 80
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.8e-08 Score=100.32 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=66.5
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
-..+||||||+..++..||...|..|+.....-.-....|||||+|+++-+|+.|+..|||..+-|..|+|....-+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 35689999999999999999999999654443344577899999999999999999999999999999999876443
No 81
>PLN02672 methionine S-methyltransferase
Probab=98.73 E-value=4.2e-08 Score=122.34 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=76.9
Q ss_pred EECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccC--CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHH
Q 002990 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAH 640 (860)
Q Consensus 565 ~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l--~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar 640 (860)
.+.|+.|.+.|+.|.. ...++.|++.+ ..... -++.+|||||||+|.+++.+++.. .+|+|+|+++.|++.|+
T Consensus 83 ~F~~l~~~V~p~VLIP--RpeTE~lve~L-~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIP--EDWSFTFYEGL-NRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred EecCCceeeCCCcccC--chhHHHHHHHH-HhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 5678999999999955 47788888773 32211 124589999999999999999875 69999999999999999
Q ss_pred HHHHHcCC----------------CcEEEEEccHHHHH
Q 002990 641 RNAEINGI----------------KNCRFVCAKAEDVM 662 (860)
Q Consensus 641 ~NA~~Ngi----------------~Nv~fi~gDae~~~ 662 (860)
+|++.|++ .+++|+++|+.+.+
T Consensus 160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred HHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 99999864 36999999986543
No 82
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.73 E-value=3.5e-08 Score=115.18 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=65.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
...+|||+|||+.+++++|+++|+++| |....+.+ ++++|||||+|.+.++|++||+.|||+.+.|++|.|..|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 346899999999999999999999994 33334333 5678999999999999999999999999999999999885
Q ss_pred C
Q 002990 239 P 239 (860)
Q Consensus 239 p 239 (860)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
No 83
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.72 E-value=1.8e-07 Score=102.32 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=68.6
Q ss_pred CeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHc
Q 002990 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 568 gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~N 646 (860)
...+.+.|+..|.+....+..|.-..++.. ..++.+|||+|||+|.+++.+++.+ .+|+|||+++.|++.|++|+..|
T Consensus 127 ~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred cEEEEECCCCcccCCCCHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 466888998888766555555543333322 2357899999999999999998875 59999999999999999999999
Q ss_pred CCC-cEEEEEcc
Q 002990 647 GIK-NCRFVCAK 657 (860)
Q Consensus 647 gi~-Nv~fi~gD 657 (860)
++. ++.++.++
T Consensus 206 ~~~~~~~~~~~~ 217 (288)
T TIGR00406 206 QVSDRLQVKLIY 217 (288)
T ss_pred CCCcceEEEecc
Confidence 985 35666554
No 84
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.70 E-value=1.5e-07 Score=96.78 Aligned_cols=60 Identities=25% Similarity=0.251 Sum_probs=55.1
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++.+|||+|||+|.+++.+++. ..+|+|||+++.|++.|++|++.+++++++|+++|+.+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~ 106 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE 106 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh
Confidence 4789999999999999999864 47999999999999999999999999889999999865
No 85
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.70 E-value=5.6e-08 Score=99.04 Aligned_cols=74 Identities=31% Similarity=0.373 Sum_probs=66.3
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l 665 (860)
..+..+.+.++.+++|+|||||++++.+|.. ..+|+|||-++.+++..++|++++|++|++++.|++-+.+..+
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL 100 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC
Confidence 3455567899999999999999999999943 4799999999999999999999999999999999999987654
No 86
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.69 E-value=3.8e-08 Score=116.20 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=65.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k-Gr~L~V~~ 236 (860)
...+.+|||+|||+.+++++|+++|++++ |..+++++ ++++|||||+|.++|+|++||+.|||+.+. |+.|.|..
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 33467899999999999999999999995 44445544 688999999999999999999999999996 78888765
Q ss_pred cC
Q 002990 237 VV 238 (860)
Q Consensus 237 A~ 238 (860)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 53
No 87
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=7.2e-08 Score=105.24 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=68.7
Q ss_pred CCeEEEEcC-CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHH
Q 002990 567 SNLRFCISP-TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 567 ~gl~f~isp-~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~ 644 (860)
..+..++.| .+|-+.+...+...++++-++. .++.+|||+|||+|.+++.+++.+ ++|+|+|+++.|++.|+.|++
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHH
Confidence 346788888 4777777666666666666654 378999999999999999999986 679999999999999999999
Q ss_pred HcCCCc
Q 002990 645 INGIKN 650 (860)
Q Consensus 645 ~Ngi~N 650 (860)
+|++..
T Consensus 207 ~N~v~~ 212 (300)
T COG2264 207 LNGVEL 212 (300)
T ss_pred HcCCch
Confidence 999975
No 88
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.66 E-value=5.6e-08 Score=115.29 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=63.8
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
+|||+|||..+++++|+.+|+++| |..+++.+ ++++|||||+|.+.++|++||+.||+..++|+.|+|..++
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 699999999999999999999994 44445443 5778999999999999999999999999999999998764
No 89
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.66 E-value=5.3e-08 Score=112.25 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=65.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
..+|||+|||..+++++|+++|+++| |..+.+.. ++++|||||+|.+.|+|.+|++.|||+.+.|+.|+|..|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 46799999999999999999999994 44454443 3678999999999999999999999999999999999886
No 90
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.65 E-value=7.4e-08 Score=99.36 Aligned_cols=75 Identities=25% Similarity=0.420 Sum_probs=65.8
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccce-eEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGIL-YKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~-~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
...|||+|||+.+++++|+++|.++|.. ...+.. ++++|||||+|.+++++..|++.|+|..|.|+.|.|..+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5789999999999999999999999543 333332 57889999999999999999999999999999999998764
No 91
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.65 E-value=6.3e-08 Score=114.35 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=63.8
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc--cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH--GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~--~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~ 241 (860)
-.|||+|||+.+++++|+++|+++ + ...++++ .++||||+|.+.|+|++||+.|||.++.|+.|+|..|+|+.
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f~~G-~I~rV~~--~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEFKPG-KVERVKK--IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCC-ceEEEEe--ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 369999999999999999999999 4 2233333 35899999999999999999999999999999999998864
No 92
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=4.6e-08 Score=108.84 Aligned_cols=75 Identities=23% Similarity=0.316 Sum_probs=66.5
Q ss_pred EEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCcccc
Q 002990 168 KCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKN 245 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~~k~ 245 (860)
+||+||+..++++.||++|+++|- ..+|||. +.||||-|.+-++|.+|++.|||+++.|..|.|..|+|-...++
T Consensus 262 LYVRNL~~~tTeE~lk~~F~~~G~-veRVkk~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 262 LYVRNLMESTTEETLKKLFNEFGK-VERVKKP--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred eeeeccchhhhHHHHHHHHHhccc-eEEeecc--cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 899999999999999999999943 3445544 67999999999999999999999999999999999999766554
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.64 E-value=1.6e-07 Score=78.17 Aligned_cols=69 Identities=25% Similarity=0.469 Sum_probs=58.8
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeEEeecc---CCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKK---KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~---r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
+|+|+|||..++.++|+.+|..++ +....+... +++++|||+|.+.++|+.|++.|+|..+.|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999983 333333332 347999999999999999999999999999999875
No 94
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.64 E-value=8.7e-08 Score=105.01 Aligned_cols=81 Identities=27% Similarity=0.451 Sum_probs=64.4
Q ss_pred CeEEEEcCC-CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHH
Q 002990 568 NLRFCISPT-AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 568 gl~f~isp~-sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~ 645 (860)
.+.+.|.|+ +|--.+...+...++.+.++ ..++.+|||+|||||.+++.+++.+ ++|+|+|+++.|++.|++|++.
T Consensus 129 ~~~I~idPg~AFGTG~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 129 EIVIEIDPGMAFGTGHHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp SEEEEESTTSSS-SSHCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCcccCCCCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH
Confidence 456788996 56555556666666666665 4567899999999999999999986 6899999999999999999999
Q ss_pred cCCCc
Q 002990 646 NGIKN 650 (860)
Q Consensus 646 Ngi~N 650 (860)
||+..
T Consensus 207 N~~~~ 211 (295)
T PF06325_consen 207 NGVED 211 (295)
T ss_dssp TT-TT
T ss_pred cCCCe
Confidence 99965
No 95
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=3.6e-08 Score=102.36 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=61.9
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
--|||||||||....+.|++.|++| +|....|.. +|++|||||||++.|.|.+|.+--|=. ++||+-.|+.|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~pi-IdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPI-IDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCc-ccccccccchh
Confidence 3489999999999999999999999 565555554 799999999999999999998876654 89998888766
No 96
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.63 E-value=1.4e-07 Score=98.18 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=61.6
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
+..+..++.+.++.+|||+|||+|.++..|++.+.+|++||+++.+++.|++|++.+++.+++++.+|+
T Consensus 67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~ 135 (212)
T PRK00312 67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG 135 (212)
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc
Confidence 344455667788899999999999999999988889999999999999999999999999999999985
No 97
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.63 E-value=3e-07 Score=106.80 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=58.1
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.++.+|||+|||.|.-+..+|... +.|+++|+++.-++.+++|+++.|+.|+.+.+.|+..
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~ 175 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRV 175 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhh
Confidence 56788999999999999999999874 6899999999999999999999999999999998765
No 98
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.62 E-value=4e-07 Score=96.73 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEE
Q 002990 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVC 655 (860)
Q Consensus 580 QvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~ 655 (860)
++.......|...+ . ..+..+|||+|||+|..++.++.. ..+|+++|+++.+++.|++|++.+|+. +++++.
T Consensus 51 ~v~~~~g~~L~~l~-~---~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~ 126 (234)
T PLN02781 51 EVPVDEGLFLSMLV-K---IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ 126 (234)
T ss_pred ccCHHHHHHHHHHH-H---HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 34444544443333 2 345678999999999999988875 369999999999999999999999995 699999
Q ss_pred ccHHHHHHHHh
Q 002990 656 AKAEDVMGSLL 666 (860)
Q Consensus 656 gDae~~~~~l~ 666 (860)
||+.+.+..|.
T Consensus 127 gda~~~L~~l~ 137 (234)
T PLN02781 127 SDALSALDQLL 137 (234)
T ss_pred ccHHHHHHHHH
Confidence 99999887764
No 99
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.61 E-value=1.1e-07 Score=100.02 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=65.1
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.++.|+|+||++.+++++|++||+.+ .|..+.+.. ++.++||||+|.+++.++.|+ .|||..+.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 46889999999999999999999999 556666555 566789999999999999998 899999999999998663
No 100
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=2.4e-07 Score=93.12 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=59.5
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+.+.+.+.++.+|||+|||+|.++..+++.+.+|+|||+++.+++.+++|+.. ..+++++.+|+.+
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~ 70 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALK 70 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhc
Confidence 4556667777888999999999999999999989999999999999999999854 4589999999765
No 101
>PRK14968 putative methyltransferase; Provisional
Probab=98.61 E-value=6.5e-07 Score=90.17 Aligned_cols=59 Identities=25% Similarity=0.421 Sum_probs=54.2
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCc--EEEEEccH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN--CRFVCAKA 658 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~N--v~fi~gDa 658 (860)
.++.+|||+|||+|.+++.++....+|+|+|+++.+++.|++|+..+++.+ +.++.+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~ 82 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL 82 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc
Confidence 567789999999999999999988999999999999999999999999866 88888875
No 102
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.60 E-value=1.4e-07 Score=98.09 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=64.5
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
...++..+.+++.+.++.+|||+|||+|.++..+++.. ++|+|+|+++.+++.|++|+..+++. +++++.+|+.+
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 44455666677777888999999999999999998864 69999999999999999999999985 59999999754
No 103
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.60 E-value=1.3e-07 Score=109.00 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=64.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
+.....|||+|||..+++++|++||+++ .|..+.+.+ ++++|||||+|.+.|+|++||. |||..+.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4445679999999999999999999999 444445443 4678999999999999999996 999999999999975
Q ss_pred cC
Q 002990 237 VV 238 (860)
Q Consensus 237 A~ 238 (860)
++
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 53
No 104
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.60 E-value=8e-08 Score=112.20 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=60.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-----------cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCce
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-----------GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-----------~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~ 231 (860)
...-+|||||||+.+++++|+.||+++ +.....+...+.+|||||+|.+.|+|.+|| .|||+.+.|+.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~ 251 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVF 251 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCce
Confidence 335579999999999999999999975 112233344677899999999999999999 59999999999
Q ss_pred eEEEe
Q 002990 232 LKVAN 236 (860)
Q Consensus 232 L~V~~ 236 (860)
|+|..
T Consensus 252 l~v~r 256 (509)
T TIGR01642 252 LKIRR 256 (509)
T ss_pred eEecC
Confidence 99863
No 105
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=7e-08 Score=94.06 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 581 vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+.+..|.-++..+.+-.+.-.|..|+|||||+|.+++..+.. ...|+|+||+++|++.+.+|+....+ ++.+++.|..
T Consensus 28 T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdil 106 (185)
T KOG3420|consen 28 TRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDIL 106 (185)
T ss_pred CcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeecc
Confidence 446677778778877777667899999999999999777765 47899999999999999999999887 5688888754
Q ss_pred H
Q 002990 660 D 660 (860)
Q Consensus 660 ~ 660 (860)
+
T Consensus 107 d 107 (185)
T KOG3420|consen 107 D 107 (185)
T ss_pred c
Confidence 4
No 106
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.57 E-value=1.4e-07 Score=102.93 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=69.6
Q ss_pred eEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 002990 569 LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648 (860)
Q Consensus 569 l~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi 648 (860)
+.|...|..||+.+...... ...+...+...++.+|||+|||+|..+++|++.+.+|+|||+++.|++.|+++++.+++
T Consensus 89 l~fy~~~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l 167 (287)
T PRK12335 89 LSFYCKPEDYFHKKYNLTAT-HSEVLEAVQTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL 167 (287)
T ss_pred EEEEEcchhhHhhhhccccc-cHHHHHHhhccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 56888898888766532111 12222222223445899999999999999999989999999999999999999999998
Q ss_pred CcEEEEEccHHH
Q 002990 649 KNCRFVCAKAED 660 (860)
Q Consensus 649 ~Nv~fi~gDae~ 660 (860)
++++..+|+..
T Consensus 168 -~v~~~~~D~~~ 178 (287)
T PRK12335 168 -NIRTGLYDINS 178 (287)
T ss_pred -ceEEEEechhc
Confidence 89999888654
No 107
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.57 E-value=5.9e-07 Score=96.17 Aligned_cols=62 Identities=26% Similarity=0.386 Sum_probs=57.0
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~ 661 (860)
..+.+|||+|||+|.+++.|++.+.+|+|||+++.|++.|++++...|+ .+++|+++|+.++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 3457999999999999999999999999999999999999999999887 5799999998874
No 108
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.57 E-value=2.8e-07 Score=99.94 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=59.3
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+.+.+++.+.++.+|||+|||+|.++..|++.+.+|+|||+++.|++.+++|+.. ++++++++|+.+
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~ 98 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALK 98 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhc
Confidence 445555666777888999999999999999999988999999999999999987742 689999999765
No 109
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.56 E-value=5.3e-07 Score=100.14 Aligned_cols=72 Identities=28% Similarity=0.447 Sum_probs=63.0
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~---~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++..+.+++.+.++.+|||+|||+|.+++.+++.+. .|+|||+++.+++.|++|++.+|++|+.++++|+.+
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 444556666778889999999999999999998763 699999999999999999999999999999998754
No 110
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.56 E-value=3.1e-07 Score=102.88 Aligned_cols=78 Identities=28% Similarity=0.348 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC--------------------------------------
Q 002990 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-------------------------------------- 624 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-------------------------------------- 624 (860)
....+.|...++.+++..++..++|..||+|||.+.+|..+.
T Consensus 173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 344556666666777888889999999999999999987763
Q ss_pred ---EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 625 ---MVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 625 ---~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
.++|+|+++.+|+.|+.||+..|+. -|+|.++|+.+
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~ 292 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATD 292 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhh
Confidence 3779999999999999999999994 59999999865
No 111
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.56 E-value=2e-07 Score=108.87 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=65.2
Q ss_pred CccccEEEeCCCc-ccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 163 DVELSKCLVHLPR-KWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 163 ~~~~ki~VgnLP~-~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.++..|||+|||. .+++++|+.+|+.| .|..+++.+ ..+|||||+|.+.++|.+||+.|||..+.|++|+|..++..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~-~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK-NKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 3556899999998 69999999999999 444444433 34699999999999999999999999999999999887543
No 112
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.56 E-value=1.5e-07 Score=107.64 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=65.5
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..|||||+|+.|++++|..+|++. .|...++.- ++.+||||+.|.+.|++..||+.|||+++.||+|+|..+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 789999999999999999999988 444444443 68899999999999999999999999999999999987743
No 113
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.56 E-value=1.9e-07 Score=99.27 Aligned_cols=69 Identities=32% Similarity=0.578 Sum_probs=62.0
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+..++...++.+|||+|||||-+++.+++.+ .+|+|+|+|+.|++.|++.+...+..+|+|+.|||+++
T Consensus 43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 3444555589999999999999999999998 79999999999999999999998888899999999874
No 114
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.56 E-value=9.4e-07 Score=94.61 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=61.4
Q ss_pred eEEEEcCC-CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHc
Q 002990 569 LRFCISPT-AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 569 l~f~isp~-sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~N 646 (860)
..+.|.|+ +|--.....+..++..+... +.++.+|||+|||+|.+++.+++.+ .+|+|+|+++.|++.|++|++.|
T Consensus 88 ~~i~i~p~~afgtg~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 88 INIELDPGMAFGTGTHPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred EEEEECCCCccCCCCCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 45777775 55545555555555555544 3467899999999999999988875 46999999999999999999999
Q ss_pred CC
Q 002990 647 GI 648 (860)
Q Consensus 647 gi 648 (860)
++
T Consensus 166 ~~ 167 (250)
T PRK00517 166 GV 167 (250)
T ss_pred CC
Confidence 88
No 115
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.55 E-value=8.3e-07 Score=100.46 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=58.3
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
...+..+||||||+|.+++.+|+.. ..++|||+++.+++.|.+++..+|++|+.++++|+..++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll 185 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL 185 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh
Confidence 3456789999999999999999885 689999999999999999999999999999999998765
No 116
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=1.4e-07 Score=100.34 Aligned_cols=90 Identities=20% Similarity=0.284 Sum_probs=72.3
Q ss_pred EECCeEEEEcCCCcccCCHHHHHHHHHHHhhhcc---CCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHH
Q 002990 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD---LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDA 639 (860)
Q Consensus 565 ~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~---l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~A 639 (860)
.++++.+...|+.|.. ...+|.++..+.+.+. ...+..+||+|||+|.|++.++... ..|+|||.++.|+..|
T Consensus 111 ~F~~l~l~~~pgVlIP--RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La 188 (328)
T KOG2904|consen 111 PFGDLDLVCKPGVLIP--RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLA 188 (328)
T ss_pred ccCCceEEecCCeeec--CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHH
Confidence 4577899999999954 5667777777766543 2345679999999999999998764 5899999999999999
Q ss_pred HHHHHHcCCCc-EEEEEc
Q 002990 640 HRNAEINGIKN-CRFVCA 656 (860)
Q Consensus 640 r~NA~~Ngi~N-v~fi~g 656 (860)
.+|++++++.+ +.+++-
T Consensus 189 ~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 189 KENAQRLKLSGRIEVIHN 206 (328)
T ss_pred HHHHHHHhhcCceEEEec
Confidence 99999999854 666644
No 117
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.53 E-value=2.9e-07 Score=96.25 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=64.4
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
..++..+.+.+.+.++.+|||+|||+|.++..+++.+ .+|++||+++.+++.|++|++.+|+.|++++++|+.
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence 4455556667778889999999999999999999875 599999999999999999999999999999999964
No 118
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.52 E-value=3e-07 Score=94.95 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=57.3
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
...++.+|||+|||+|.+++.||+.+.+|+|||+|+.|++.|++++..+++.+++++++|+.+
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~ 89 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN 89 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh
Confidence 344567999999999999999999988999999999999999999999999889999998754
No 119
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.50 E-value=1.6e-06 Score=91.05 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=74.4
Q ss_pred cCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEE
Q 002990 574 SPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653 (860)
Q Consensus 574 sp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~f 653 (860)
.+.+|+|.+..++...+.++...+...++.+|||+|||+|.++..+++...+|+++|+++.+++.|+.++..+++ ++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~ 99 (233)
T PRK05134 21 DPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-KIDY 99 (233)
T ss_pred ccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-ceEE
Confidence 567888888887777677777776666788999999999999999999888999999999999999999988776 6888
Q ss_pred EEccHHHH
Q 002990 654 VCAKAEDV 661 (860)
Q Consensus 654 i~gDae~~ 661 (860)
+.+++.++
T Consensus 100 ~~~~~~~~ 107 (233)
T PRK05134 100 RQTTAEEL 107 (233)
T ss_pred EecCHHHh
Confidence 88887654
No 120
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.49 E-value=2.7e-08 Score=70.76 Aligned_cols=27 Identities=56% Similarity=1.190 Sum_probs=22.8
Q ss_pred ccccccccccccCCCCCCCCCCCCcCc
Q 002990 81 HKTSLCSYFRKVGTCCHGSTCRYAHGE 107 (860)
Q Consensus 81 ~kt~lc~~~~~~g~c~~g~~C~~ahg~ 107 (860)
|||.+|.+|.++|.|++|++|+|+|++
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 799999999999999999999999985
No 121
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=3.4e-07 Score=104.03 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=68.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHH-----cC-CccCCceeE
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEEL-----EG-ISIGNKTLK 233 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~L-----nG-~~~kGr~L~ 233 (860)
+..|||+|||+..++++|+..|++| .|.|..+.+ ++++|.|||.|.++..++++|+.- .| +.++||.|+
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 4579999999999999999999999 677776665 689999999999999999999988 45 789999999
Q ss_pred EEecCCCC
Q 002990 234 VANVVPRS 241 (860)
Q Consensus 234 V~~A~pk~ 241 (860)
|..|.+|.
T Consensus 372 v~~Av~Rk 379 (678)
T KOG0127|consen 372 VTLAVTRK 379 (678)
T ss_pred eeeccchH
Confidence 99998773
No 122
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.48 E-value=2.4e-07 Score=98.43 Aligned_cols=69 Identities=33% Similarity=0.579 Sum_probs=52.3
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+.+.+.+.++.+|||+|||||.+++.+++.. .+|+|+|+++.|++.|++.++..+..+|+|+++|++++
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l 110 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL 110 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh
Confidence 3444566788899999999999999999874 59999999999999999999999888999999999874
No 123
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.47 E-value=3.6e-07 Score=96.40 Aligned_cols=61 Identities=28% Similarity=0.421 Sum_probs=57.0
Q ss_pred CCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
.+.+|||+|||.|.++.+||+.++.|+|+|+++.+|+.|+..|..+|+. +.+.+..++++.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~ 119 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLA 119 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHH
Confidence 5779999999999999999999999999999999999999999999985 889999888864
No 124
>PLN02476 O-methyltransferase
Probab=98.47 E-value=3.4e-06 Score=91.76 Aligned_cols=83 Identities=22% Similarity=0.223 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEE
Q 002990 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVC 655 (860)
Q Consensus 580 QvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~ 655 (860)
++-+.+.+.|...+. ..+..+|||+|+|+|..++.+|.. .++|+++|.++.+++.|++|++.+|+. +++++.
T Consensus 101 ~v~~~~g~lL~~L~~----~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~ 176 (278)
T PLN02476 101 QVSPDQAQLLAMLVQ----ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH 176 (278)
T ss_pred ccCHHHHHHHHHHHH----hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 445566655554433 345679999999999999999975 358999999999999999999999996 799999
Q ss_pred ccHHHHHHHHh
Q 002990 656 AKAEDVMGSLL 666 (860)
Q Consensus 656 gDae~~~~~l~ 666 (860)
||+.+.|+.+.
T Consensus 177 GdA~e~L~~l~ 187 (278)
T PLN02476 177 GLAAESLKSMI 187 (278)
T ss_pred cCHHHHHHHHH
Confidence 99999988764
No 125
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.46 E-value=5.5e-07 Score=74.01 Aligned_cols=55 Identities=35% Similarity=0.477 Sum_probs=45.1
Q ss_pred HHHHhhhccceeEEeeccCC-cceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 182 LKKFLADHGILYKSAKKKKG-MTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 182 Lkk~l~~~~v~~~~ik~~r~-~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
|+++|+++|- ..++...+. +++|||+|.+.++|++|++.|||..|.|++|+|.-|
T Consensus 1 L~~~f~~fG~-V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGE-VKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS--EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCccc-EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999953 344444333 599999999999999999999999999999999754
No 126
>PRK04266 fibrillarin; Provisional
Probab=98.46 E-value=3.3e-06 Score=89.51 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=55.6
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+.+.+.++.+|||+|||+|.+++.|++.. +.|+|+|+++.|++.+.++++.. .|+.++.+|+.
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~ 130 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADAR 130 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCC
Confidence 45778899999999999999999999986 59999999999999998888753 68999999864
No 127
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.45 E-value=1.9e-06 Score=94.21 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=60.7
Q ss_pred hccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 596 ~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
.+.+.++..|||+|+|.|.-+..+|... +.|+++|++..-+...+.|+++.|+.++..+..|+......
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK 151 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccc
Confidence 3467788999999999999999999875 59999999999999999999999999999999888776544
No 128
>smart00361 RRM_1 RNA recognition motif.
Probab=98.45 E-value=3.9e-07 Score=78.71 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=45.0
Q ss_pred HHHHHHHhh----hcc-ceeEE-eec------cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 002990 179 SDNLKKFLA----DHG-ILYKS-AKK------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (860)
Q Consensus 179 ~~~Lkk~l~----~~~-v~~~~-ik~------~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V 234 (860)
+++|+.+|. ++| +..+. +.. ++++|||||+|.+.++|.+|++.|||..+.||+|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 773 32221 122 457899999999999999999999999999999986
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.41 E-value=6.4e-07 Score=93.78 Aligned_cols=73 Identities=26% Similarity=0.351 Sum_probs=61.4
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
..++..+++++.+.++.+|||+|||+|+++..||..+ ..|++||+++..++.|++|+...++.||.++++|..
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh
Confidence 3455667778889999999999999999999999875 379999999999999999999999999999999853
No 130
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.41 E-value=6.6e-07 Score=104.54 Aligned_cols=76 Identities=25% Similarity=0.378 Sum_probs=64.6
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccc-eeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCce------eE
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGI-LYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKT------LK 233 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v-~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~------L~ 233 (860)
.-.|||+|||..+++++|+++|+++|. ....++. ..+++||||+|.+.|+|.+||..|||+.+.|+. |+
T Consensus 394 s~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lk 473 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLK 473 (481)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEE
Confidence 457999999999999999999999974 3444433 124699999999999999999999999999985 99
Q ss_pred EEecCCC
Q 002990 234 VANVVPR 240 (860)
Q Consensus 234 V~~A~pk 240 (860)
|+-++++
T Consensus 474 v~fs~~~ 480 (481)
T TIGR01649 474 VSFSTSR 480 (481)
T ss_pred EEeccCC
Confidence 9988764
No 131
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.41 E-value=1e-06 Score=92.33 Aligned_cols=68 Identities=28% Similarity=0.503 Sum_probs=60.0
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++.++.+.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+.++..+++++++++++|+++
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME 107 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc
Confidence 3445567778899999999999999999763 5999999999999999999998889899999999865
No 132
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.40 E-value=6.3e-07 Score=96.49 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=60.4
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.+.+.+.+++.++.+|||+|||+|.+++.+++.+.+|+|||+++.+++.+++++.. ..|++++++|+.+
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~ 86 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALK 86 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEecccc
Confidence 3444455555677888999999999999999999999999999999999999998854 4689999999865
No 133
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.39 E-value=2e-06 Score=104.82 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=59.1
Q ss_pred HHHHHHHhhhccC-CCCCcEEeeccCCcHHHHHHHhhC------------------------------------------
Q 002990 587 EKLYSLGGDWADL-GPDTLLFDVCCGTGTIGLTLAHRV------------------------------------------ 623 (860)
Q Consensus 587 e~L~~~i~~~~~l-~~~~~VLDL~CGtG~i~L~LA~~~------------------------------------------ 623 (860)
+.|...++..++. .++..++|.+||+|||.+.+|..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3344434444454 457899999999999999987631
Q ss_pred --CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 624 --GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 624 --~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
.+|+|+|+++.|++.|+.|+..+|+.+ +.|.++|+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~ 294 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVAD 294 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhh
Confidence 269999999999999999999999964 8999999765
No 134
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=3.6e-07 Score=91.74 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=65.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccC-CcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKK-GMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r-~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.-+|||+|||.++-++++.++|.+| -|..+.+|..+ ..+||||.|+++-+|+.||..-||+.+.|..|+|..+.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4579999999999999999999999 55556655543 46899999999999999999999999999999998763
No 135
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=8.6e-07 Score=93.01 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=71.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
.-.+.|--||..|+.++||.||.+. +|.+++..+ +.+-|||||.+-.+++|++||..|||..+..|+|+|+-|.|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 4468899999999999999999998 677776655 57789999999999999999999999999999999999998
Q ss_pred CCccc
Q 002990 240 RSFDK 244 (860)
Q Consensus 240 k~~~k 244 (860)
..+.-
T Consensus 121 Ss~~I 125 (360)
T KOG0145|consen 121 SSDSI 125 (360)
T ss_pred Chhhh
Confidence 76643
No 136
>PLN02244 tocopherol O-methyltransferase
Probab=98.36 E-value=1.5e-06 Score=97.33 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhhccC-----CCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEE
Q 002990 583 TLAAEKLYSLGGDWADL-----GPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVC 655 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~~l-----~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~ 655 (860)
..+...++..+++++.+ .++.+|||+|||+|.+++.|++. ..+|+|||+++.+++.|+++++.+++ ++++|+.
T Consensus 95 ~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~ 174 (340)
T PLN02244 95 RQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV 174 (340)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 34445566777777776 67789999999999999999987 47999999999999999999999988 4799999
Q ss_pred ccHHH
Q 002990 656 AKAED 660 (860)
Q Consensus 656 gDae~ 660 (860)
+|+.+
T Consensus 175 ~D~~~ 179 (340)
T PLN02244 175 ADALN 179 (340)
T ss_pred cCccc
Confidence 99765
No 137
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=7.8e-07 Score=94.00 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=69.6
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
+-|+|+-|...++.++||..|.++ +|+..+|.+ .+++|||||.|-+.++|+.||+.|||.=+.+|.|+-+.|.-|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 459999999999999999999999 777788777 689999999999999999999999999889999999998655
Q ss_pred C
Q 002990 241 S 241 (860)
Q Consensus 241 ~ 241 (860)
+
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 5
No 138
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.5e-06 Score=90.49 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=64.5
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
+.-.+.+++.+.++.+||++|||+|+.+-.||+.+.+|+.||+.+...+.|++|++..|+.||.+++||.
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 3345666778899999999999999999999999999999999999999999999999999999999994
No 139
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.35 E-value=6e-07 Score=99.40 Aligned_cols=84 Identities=25% Similarity=0.326 Sum_probs=67.5
Q ss_pred CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 002990 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655 (860)
Q Consensus 576 ~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~ 655 (860)
..||++ ...-..|......++.+..|+.|||.+||||+|.+.+.-.+.+|+|+|++..|++-|+.|++..+++...++.
T Consensus 173 RPf~~p-~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 173 RPFFRP-GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred CCccCc-CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 355654 2223333344445556788999999999999999999999999999999999999999999999998887777
Q ss_pred c-cHHH
Q 002990 656 A-KAED 660 (860)
Q Consensus 656 g-Dae~ 660 (860)
+ ||..
T Consensus 252 ~~Da~~ 257 (347)
T COG1041 252 VLDATN 257 (347)
T ss_pred eccccc
Confidence 6 7654
No 140
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.34 E-value=1.4e-06 Score=89.87 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=55.0
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+++....+.+|||+|||+|.+++.|++++.+|+|+|+++.|++.|++++..+++. +.+..+|+.
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~ 87 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDIN 87 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccch
Confidence 3334445679999999999999999998889999999999999999999998885 777777754
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.34 E-value=5e-06 Score=86.56 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=67.5
Q ss_pred CCCcccCCHHHHHHHHHHHhhhccC----CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 002990 575 PTAFFQVNTLAAEKLYSLGGDWADL----GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN 650 (860)
Q Consensus 575 p~sFFQvN~~~ae~L~~~i~~~~~l----~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~N 650 (860)
+..+|+.........++++.+.+.. ..+.+|||+|||+|.++..+++...+|+|+|+++.+++.++.++..+++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 94 (224)
T TIGR01983 15 PNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLK 94 (224)
T ss_pred CCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 4444554444444444555555442 346789999999999999999888889999999999999999999888877
Q ss_pred EEEEEccHHHH
Q 002990 651 CRFVCAKAEDV 661 (860)
Q Consensus 651 v~fi~gDae~~ 661 (860)
+.|..+|+.+.
T Consensus 95 ~~~~~~d~~~~ 105 (224)
T TIGR01983 95 IEYRCTSVEDL 105 (224)
T ss_pred eEEEeCCHHHh
Confidence 99999987664
No 142
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=8.6e-07 Score=100.84 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=66.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
..++.|+||||.+...+|+.+|+.+| |..+.|.+ ++-.|||||+|...-+|.+|++.|||..|+||++-|-.|.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 66899999999999999999999994 33444444 344599999999999999999999999999999999988776
No 143
>PRK04457 spermidine synthase; Provisional
Probab=98.32 E-value=1.7e-05 Score=85.89 Aligned_cols=64 Identities=11% Similarity=0.198 Sum_probs=55.7
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGS 664 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~~~~ 664 (860)
...+|||||||+|+++..+++.. .+|++||+++.+++.|++++...+. ++++++.+|+.+++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV 132 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence 45789999999999999998774 6899999999999999999876654 6899999999887653
No 144
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.31 E-value=3.2e-06 Score=93.80 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=50.0
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc-CCC-cEEEEE-ccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN-GIK-NCRFVC-AKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~N-gi~-Nv~fi~-gDae~ 660 (860)
.+.++||||||+|.|...|+.. ..+++|+|+++.|++.|++|++.| ++. +|.++. .+..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~ 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh
Confidence 4578999999999998888765 469999999999999999999999 785 577753 44444
No 145
>PRK10742 putative methyltransferase; Provisional
Probab=98.30 E-value=3e-06 Score=90.36 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=63.2
Q ss_pred HHhhhccCCCCC--cEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc------C--C-CcEEEEEccHHH
Q 002990 592 LGGDWADLGPDT--LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN------G--I-KNCRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~l~~~~--~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~N------g--i-~Nv~fi~gDae~ 660 (860)
.+.+.++++++. +|||+++|+|..++.+|..+.+|++||.++.+....+.|++.. + + .+++++++|+.+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 455666777777 8999999999999999999888999999999999999999984 3 2 679999999998
Q ss_pred HHHH
Q 002990 661 VMGS 664 (860)
Q Consensus 661 ~~~~ 664 (860)
+|.+
T Consensus 157 ~L~~ 160 (250)
T PRK10742 157 ALTD 160 (250)
T ss_pred HHhh
Confidence 8754
No 146
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=4.3e-06 Score=94.25 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=59.8
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCC----EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG----MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~----~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+...+++.++.+|||+|++.|.-+..+|.... .|+++|+++.-++..+.|+++.|+.|+..++.|+..
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~ 219 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARR 219 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccc
Confidence 33556788999999999999999999998763 479999999999999999999999998888887643
No 147
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.30 E-value=8.2e-07 Score=90.68 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=65.0
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
+.+.|-||.+-++.++|+.+|++| .|-.+.|.. +.++|||||-|-...+|+.|++.|+|..++|+.|+|..|.
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 468999999999999999999999 454555554 5789999999999999999999999999999999998773
No 148
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.29 E-value=1.9e-06 Score=89.38 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVM 662 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~~~ 662 (860)
..++.+...+.... ....|+|.+||.|.-++..|..+-.|++||+++.-|..|+.||+..|++ .|+|+|||+.++.
T Consensus 80 ~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 80 KIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA 156 (263)
T ss_pred HHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence 45555555555443 4568999999999999999999999999999999999999999999995 6999999999998
Q ss_pred HHH
Q 002990 663 GSL 665 (860)
Q Consensus 663 ~~l 665 (860)
.+|
T Consensus 157 ~~l 159 (263)
T KOG2730|consen 157 SKL 159 (263)
T ss_pred HHH
Confidence 876
No 149
>PHA03411 putative methyltransferase; Provisional
Probab=98.27 E-value=2.5e-06 Score=92.38 Aligned_cols=56 Identities=16% Similarity=0.386 Sum_probs=47.8
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
...+|||+|||+|.+++.++.+. .+|+|||+++.|++.|++|+ .++.++++|+.++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~ 121 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEF 121 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhh
Confidence 34689999999999999998763 69999999999999999874 4688999997653
No 150
>PHA03412 putative methyltransferase; Provisional
Probab=98.26 E-value=2.1e-06 Score=91.08 Aligned_cols=53 Identities=19% Similarity=0.376 Sum_probs=45.7
Q ss_pred CCcEEeeccCCcHHHHHHHhh-----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHR-----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~-----~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+.+|||+|||+|.+++.+++. ..+|+|||+++.|++.|++|+ .++.++++|+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~ 107 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADAL 107 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchh
Confidence 568999999999999999875 358999999999999999885 35788888864
No 151
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.26 E-value=1.1e-06 Score=100.54 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=68.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.-+-.++|||||=+.++++.|+..|+.+ .|..+...+ ++++|||||+|.+.|+|.+|.+.|||.++-|+.|+|+.
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 3334459999999999999999999999 444444443 78999999999999999999999999999999999987
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
..-+-.
T Consensus 355 v~~r~~ 360 (549)
T KOG0147|consen 355 VTERVD 360 (549)
T ss_pred eeeecc
Confidence 765433
No 152
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.26 E-value=2e-06 Score=93.66 Aligned_cols=138 Identities=21% Similarity=0.292 Sum_probs=95.7
Q ss_pred CCCCcccc---cccccccccCCCCCCCCCCCCcCcc--------ccCCCCCCCCCcchHHHHH-hhhhcccchhhhhhhh
Q 002990 76 SLHPLHKT---SLCSYFRKVGTCCHGSTCRYAHGEE--------ELRIRPDNTWDPTSERAKK-ARKLEDGDKCEAKEDA 143 (860)
Q Consensus 76 ~~~~~~kt---~lc~~~~~~g~c~~g~~C~~ahg~~--------elr~~p~~~~~~~ser~k~-~~k~e~~Ek~~~~e~~ 143 (860)
.+.+.||. -+|.||.. |.|..|+.|-|-|-.- .++-+.-+..||..+.--. +..+---| -.|
T Consensus 151 rt~p~ykrn~p~Icsf~v~-geckRG~ec~yrhEkp~d~~L~~qni~dryyg~ndPva~kil~ra~~~~~le---pPe-- 224 (377)
T KOG0153|consen 151 RTTPYYKRNRPHICSFFVK-GECKRGAECPYRHEKPPDDPLSLQNIKDRYYGLNDPVALKILNRAGSAGTLE---PPE-- 224 (377)
T ss_pred ccCccccCCCCccccceee-ccccccccccccccCCCCcchhhcccccccccccChHHHHHHhhcccccccC---CCc--
Confidence 34556664 48999988 7999999999998542 2233444666676642211 11110000 000
Q ss_pred hHHhhhhccccCCCCCCCCCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHH
Q 002990 144 VEEVMMTEAVVDGDGDGDQDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEEL 222 (860)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~L 222 (860)
+..--.+|||||-..+.+.++++.|.+| ++.+..+..+ ++.|||+|.+.+.|++|.+++
T Consensus 225 ------------------D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~--~~CAFv~ftTR~aAE~Aae~~ 284 (377)
T KOG0153|consen 225 ------------------DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR--KGCAFVTFTTREAAEKAAEKS 284 (377)
T ss_pred ------------------ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc--cccceeeehhhHHHHHHHHhh
Confidence 1122259999998899999999999999 6666665544 569999999999999998776
Q ss_pred cC-CccCCceeEEEecCC
Q 002990 223 EG-ISIGNKTLKVANVVP 239 (860)
Q Consensus 223 nG-~~~kGr~L~V~~A~p 239 (860)
-. ..++|++|+|....|
T Consensus 285 ~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 285 FNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeeecceEEEEEeCCC
Confidence 55 447999999997766
No 153
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=3.3e-06 Score=91.69 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=66.2
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~~ 661 (860)
++.+.+.+.+.+|++|||+|||.|.+++.+|+.. .+|+||++|+++.+.|++.++..|++ +++++..|-.++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 4678888999999999999999999999999995 89999999999999999999999997 899988886654
No 154
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.25 E-value=2.1e-06 Score=92.03 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=60.5
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+...+.+.+++.++.+|||+|||+|.++..|++.+..|++||+++.+++.++.++.. ..+++++++|+.+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~ 86 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhc
Confidence 33445555566677788999999999999999999999999999999999999988743 4689999999855
No 155
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.25 E-value=4.1e-06 Score=93.14 Aligned_cols=62 Identities=23% Similarity=0.413 Sum_probs=55.7
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~ 661 (860)
.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|+.++...++ .+++|++++++++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence 3567899999999999999999888999999999999999999887665 5899999998764
No 156
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=9.3e-07 Score=98.28 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=67.8
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCc-cCCc--eeEEEe
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGIS-IGNK--TLKVAN 236 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~-~kGr--~L~V~~ 236 (860)
.+.|+|||-|++..++.+++.+|.+|| |..+.|.+ +.+||+|||+|.+.|.|..||+.|||.. +.|. .|-|+.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 377999999999999999999999995 45556666 6899999999999999999999999965 8886 799999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|.++.
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 97653
No 157
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.5e-07 Score=91.95 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=64.9
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.+|||+|-..++++=|-..|=.+ .|....+.. .+.||||||+|.-.|+|..||+-||+.++=||+|+|+.|+|-
T Consensus 12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 49999999999999888888888 454444444 578999999999999999999999999999999999999874
No 158
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.25 E-value=7.7e-06 Score=71.61 Aligned_cols=58 Identities=28% Similarity=0.432 Sum_probs=49.8
Q ss_pred cEEeeccCCcHHHHHHHh-hCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 604 LLFDVCCGTGTIGLTLAH-RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 604 ~VLDL~CGtG~i~L~LA~-~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+|+|+|||+|.++..++. ...+++++|+++.++..++++...++..++.++.+|+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhh
Confidence 489999999999999997 5689999999999999999766666667899999887654
No 159
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.24 E-value=4.8e-06 Score=89.15 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=52.0
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+++.+...++.+|||+|||+|.++..|++. ..+|+|+|+++.|++.|+.+ +++|+++|+++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~ 83 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRD 83 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhh
Confidence 3455566677889999999999999999987 46999999999999999753 57899999765
No 160
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.24 E-value=2e-06 Score=86.53 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=64.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
+..-+||||||+..+++.-|.++|-+.| |....+.+ ...+|||||.|.++|+|+=||+.||+..+=||+|+|+.|
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4456799999999999999999999884 33333343 246899999999999999999999999999999999988
Q ss_pred C
Q 002990 238 V 238 (860)
Q Consensus 238 ~ 238 (860)
-
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 5
No 161
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.24 E-value=7.7e-06 Score=87.37 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=54.1
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..++..+.+.++.+|||+|||+|.++..++... .+|+|||+++.|++.|+++. .++.|+.+|+.+
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~ 87 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIAS 87 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhc
Confidence 344455566778899999999999999999874 79999999999999998763 578899998754
No 162
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=1.4e-07 Score=94.59 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=62.4
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccce----eEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGIL----YKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~----~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.|||||||+..++.|+--.|++||.. .++-++ ++|+||||++++++-.---||.-|||+.+.||.|+|-..
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 49999999999999999999999443 333333 789999999999999999999999999999999999755
No 163
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=2.3e-06 Score=96.69 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=67.7
Q ss_pred EEEeCCCcccCHHHHHHHhhhc-cceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 002990 168 KCLVHLPRKWHSDNLKKFLADH-GILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~ 242 (860)
|||.||+..++.++|..+|+.+ .|.++++.+ ..++|| ||.|+++++|++||+.|||..+.|++|.|..+..+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999 788888887 347899 9999999999999999999999999999998876543
No 164
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.22 E-value=3.5e-06 Score=90.89 Aligned_cols=68 Identities=25% Similarity=0.593 Sum_probs=56.1
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHH---cCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEI---NGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~---Ngi~Nv~fi~gDae~ 660 (860)
+.+++.+.++.+|||+|||+|.+++.+++.. .+|+|||+++.|++.|++++.. .+..+++|+++|+++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 3445567778899999999999999999864 5999999999999999887642 234689999999865
No 165
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.22 E-value=2.2e-06 Score=100.28 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=63.4
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeecc-------CCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKK-------KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~-------r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..++||.||++..+.++|...|.++ .|..+.|.++ .|+|||||.|.++|+|+.|++.|+|..++|..|.|..
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 4459999999999999999999998 4444444442 3579999999999999999999999999999999887
Q ss_pred cC
Q 002990 237 VV 238 (860)
Q Consensus 237 A~ 238 (860)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 74
No 166
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.22 E-value=1.8e-06 Score=79.14 Aligned_cols=56 Identities=34% Similarity=0.604 Sum_probs=48.9
Q ss_pred EEeeccCCcHHHHHHHhhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 605 LFDVCCGTGTIGLTLAHRV-----GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 605 VLDL~CGtG~i~L~LA~~~-----~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
|||||||+|..+..++..+ .+++|||+++.|++.|+++....++ +++|+++|+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHC
Confidence 7999999999999999886 7999999999999999999988777 899999999763
No 167
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.22 E-value=4.4e-06 Score=89.25 Aligned_cols=61 Identities=16% Similarity=0.341 Sum_probs=54.0
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
.++.+|||+|||+|.+++.+++. ..+|+|||+++.|++.|++++..++.. +++++++|+.+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~ 120 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 120 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh
Confidence 46789999999999999998873 369999999999999999999988874 79999999765
No 168
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=3.7e-06 Score=89.03 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=67.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~ 242 (860)
....||+||++...++++|++.|+.| .|..+++- +-+||+||-|.+.|.|.+||..+||.++.|..+++..-+.-.+
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF--k~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF--KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEe--cccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 35689999999999999999999999 44444444 5579999999999999999999999999999999987765554
Q ss_pred cc
Q 002990 243 DK 244 (860)
Q Consensus 243 ~k 244 (860)
.+
T Consensus 241 ~~ 242 (321)
T KOG0148|consen 241 GI 242 (321)
T ss_pred CC
Confidence 43
No 169
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.19 E-value=5e-06 Score=90.46 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~~ 661 (860)
+-...++.+.+.+++++|.+|||||||.|.+++.+|++ ..+|+||.+|+..++.|++.++..|+. .+++...|..++
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 34456788889999999999999999999999999998 679999999999999999999999995 699999987653
No 170
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.17 E-value=3.5e-06 Score=93.73 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=65.9
Q ss_pred ccc-EEEeCCCcccCHHHHHHHhhhc--cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 165 ELS-KCLVHLPRKWHSDNLKKFLADH--GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 165 ~~k-i~VgnLP~~~~~~~Lkk~l~~~--~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
-++ +||-|||+.+.-.+||+|+.+. +|.|+.+.. ++++|+|.|.|+++|.++||+++||-++|+||.|.|.+-
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 454 9999999999999999999977 777776655 688999999999999999999999999999999999754
No 171
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.17 E-value=1.8e-05 Score=82.72 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=43.9
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+.++.+|||||||+|.++..+++.. ..|+|||+++ .+.+.++.++++|+.+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDPIVGVDFLQGDFRDE 103 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccCCCCcEEEecCCCCh
Confidence 4678899999999999999999875 5899999988 13456799999998763
No 172
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.17 E-value=6.5e-06 Score=85.94 Aligned_cols=59 Identities=24% Similarity=0.427 Sum_probs=53.9
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKA 658 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDa 658 (860)
.++.+|||+|||+|.++..|++....|+|+|+++.+++.|++++...++ .++.|+.+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL 121 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc
Confidence 4567999999999999999999888899999999999999999988887 5799999984
No 173
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=3.9e-06 Score=93.49 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=61.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcccee-EEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCc-cCCc--eeE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILY-KSAKK----KKGMTVGFVKFESVEQLKNAVEELEGIS-IGNK--TLK 233 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~-~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~-~kGr--~L~ 233 (860)
+...+|+|||-+|+.|+|.||+.+|++||..+ +-+.| +.++|+.||+|.+.++|++||..|+++. +-|- .+.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 35567999999999999999999999994433 33333 4678999999999999999999999975 6664 566
Q ss_pred EEec
Q 002990 234 VANV 237 (860)
Q Consensus 234 V~~A 237 (860)
|+.|
T Consensus 111 vk~A 114 (510)
T KOG0144|consen 111 VKYA 114 (510)
T ss_pred eccc
Confidence 6555
No 174
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.12 E-value=8.7e-06 Score=75.28 Aligned_cols=72 Identities=24% Similarity=0.373 Sum_probs=62.5
Q ss_pred EEEeCCCcccCHHHHHHHhhhccceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 168 KCLVHLPRKWHSDNLKKFLADHGILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
+||+|||+.++.+++-++|.+||... -|.. +..+|-|||.+++..+|.+|++.|+|+-+.++-|.|---+|-
T Consensus 21 LyirNLp~~ITseemydlFGkyg~Ir-QIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 21 LYIRNLPFKITSEEMYDLFGKYGTIR-QIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred EEEecCCccccHHHHHHHhhcccceE-EEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 89999999999999999999995532 2333 467899999999999999999999999999999999766553
No 175
>PTZ00146 fibrillarin; Provisional
Probab=98.12 E-value=4.2e-05 Score=83.74 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=51.7
Q ss_pred hccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 596 ~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.+.++.+|||||||+|++++++|..+ ..|+|||+++.+.++...-++. ..||.++.+|+..
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--r~NI~~I~~Da~~ 192 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--RPNIVPIIEDARY 192 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--cCCCEEEECCccC
Confidence 3467889999999999999999999986 6899999999887766665543 2688999998753
No 176
>PRK00811 spermidine synthase; Provisional
Probab=98.12 E-value=3.1e-05 Score=84.71 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=53.6
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAEDVMG 663 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ng-----i~Nv~fi~gDae~~~~ 663 (860)
...+||+||||.|.++..++++ ..+|++||+++.+++.|++++...+ -.+++++.+|+.+++.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~ 145 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA 145 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh
Confidence 4578999999999999999886 4799999999999999999886432 2479999999988654
No 177
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.11 E-value=1.8e-05 Score=82.79 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=60.1
Q ss_pred CCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHHHHhhh
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGSLLKD 668 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~~~~l~~~ 668 (860)
...+||++|||+|+-++++|+. .++|+.||+++...+.|++|++..|+ ++|+++.||+.++++.|..+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~ 116 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND 116 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc
Confidence 4568999999999999999975 37999999999999999999999999 47999999999999988643
No 178
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.08 E-value=4.7e-05 Score=77.80 Aligned_cols=61 Identities=21% Similarity=0.386 Sum_probs=47.2
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+....+..+.++.+|||+|||+|.++..+++.. .+|+|||+++.+ +..++.++++|+.+
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~ 83 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTD 83 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCC
Confidence 33444445566788999999999999999998764 479999999854 23578899988754
No 179
>PRK03612 spermidine synthase; Provisional
Probab=98.08 E-value=2e-05 Score=93.15 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=52.6
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHc-----CC--CcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEIN-----GI--KNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~N-----gi--~Nv~fi~gDae~~~~ 663 (860)
.+..+|||+|||+|.++..++++. .+|++||+++.+++.|++|.... .+ ++++++.+|+.+++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~ 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH
Confidence 456789999999999999988874 69999999999999999964321 12 479999999988654
No 180
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.08 E-value=8.6e-06 Score=87.87 Aligned_cols=64 Identities=33% Similarity=0.495 Sum_probs=56.8
Q ss_pred ccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 597 ~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+.++.+|||+|||+|..++.+++.. .+|+|||+++.+++.|++|+..+++.+++|+.+|+++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~ 139 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA 139 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhh
Confidence 456788999999999999998887653 4799999999999999999999999999999999765
No 181
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.07 E-value=2.4e-05 Score=83.38 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=50.5
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+.+......+|||+|||+|.++..|+..+.+|+|+|+++.|++.|+.+.. .+.|+++|+++
T Consensus 34 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~ 96 (251)
T PRK10258 34 LLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIES 96 (251)
T ss_pred HHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCccc
Confidence 3344444456789999999999999999888999999999999999988642 34678888654
No 182
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=4.4e-06 Score=88.05 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=68.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
...+..++|-+||..+++.+|-..|-.+ .|.+.++-. ..++-||||.|+|+..++.||..|||+.++=|+|+|-.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 4557899999999999999999999999 444445444 47899999999999999999999999999999999987
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
..||
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 6665
No 183
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=4.6e-05 Score=81.26 Aligned_cols=93 Identities=15% Similarity=0.268 Sum_probs=71.9
Q ss_pred CeEEEEcC---CCcccCCHHHHHHHH----HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHH
Q 002990 568 NLRFCISP---TAFFQVNTLAAEKLY----SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVS 637 (860)
Q Consensus 568 gl~f~isp---~sFFQvN~~~ae~L~----~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe 637 (860)
|..|.+.. ..|+-.-...++.+| ..|...+++.++.+|||.|.|+|.++.+||... ++|+.+|+.++..+
T Consensus 54 G~~f~vl~p~~~d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k 133 (256)
T COG2519 54 GVKFYVLKPTPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAK 133 (256)
T ss_pred CceEEEeCCCHHHHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHH
Confidence 54455443 223333334444454 356777899999999999999999999999753 79999999999999
Q ss_pred HHHHHHHHcCCCc-EEEEEccHHH
Q 002990 638 DAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 638 ~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
.|++|++..++.| +++..+|+.+
T Consensus 134 ~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 134 TARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred HHHHHHHHhccccceEEEeccccc
Confidence 9999999999976 8998888644
No 184
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=9.4e-06 Score=77.63 Aligned_cols=73 Identities=11% Similarity=0.220 Sum_probs=62.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeec------cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~------~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
..++..||||||+++++++++-+||++.|-. .+|.. +..-||.||.|-+.++|..|++-|||..+..+.|++-
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~i-rriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDI-RRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccch-heeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 3456679999999999999999999998432 33333 3456999999999999999999999999999999985
No 185
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.04 E-value=1.9e-05 Score=83.68 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=53.6
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~ 661 (860)
.++.+|||+|||+|.++..+++. ..+|+|||+++.|++.|++++...+. .++.|+++|+.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV 118 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence 46678999999999999999875 35899999999999999999887664 4799999998753
No 186
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.02 E-value=5.4e-06 Score=88.52 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=63.8
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
+|++|||||...++.+|+.+|+++ .|..+.|. +.||||-.+++..+..||.-|||+.+.|..|.|..++-|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee----cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 579999999999999999999999 66666665 469999999999999999999999999999999877554
No 187
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.99 E-value=2e-05 Score=87.81 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~ 661 (860)
+..+...+....+.+|||+|||+|.+++.++..+ ..|+|||.++.++..++...+..+. .++.|+.++++++
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l 184 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL 184 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC
Confidence 4455556655567899999999999999999875 5799999999999776655444332 4799999998764
No 188
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.98 E-value=8.2e-06 Score=87.01 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=51.0
Q ss_pred CCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC------cEEEEEccHHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK------NCRFVCAKAEDV 661 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~------Nv~fi~gDae~~ 661 (860)
|..|||+|||+|.++.+||+.++.|+|||+++.||+.|++.+..+-.. .++|.+.++++.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~ 155 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL 155 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc
Confidence 577999999999999999999999999999999999999996655432 266777777654
No 189
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.95 E-value=1.6e-05 Score=81.72 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=61.8
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeec------cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKK------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~------~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
-+||+.+|..+.+.++..+|.+++........ |.|+|||||.|+++|.|.-|.+.||+|.+.|+.|.|.--.|
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 39999999999999999999999433332222 67899999999999999999999999999999999875433
No 190
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.95 E-value=3.3e-05 Score=79.94 Aligned_cols=66 Identities=24% Similarity=0.235 Sum_probs=53.0
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+.+.+...+..++||||||.|-.+++||+++-.|+|+|+|+.+++.+++-|+..+++ |++.+.|+.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~ 87 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLN 87 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGC
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecch
Confidence 333444556678999999999999999999999999999999999999999999986 999988854
No 191
>PLN03075 nicotianamine synthase; Provisional
Probab=97.94 E-value=7.9e-05 Score=81.84 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=48.7
Q ss_pred CCCcEEeeccCCcHH-HHHHHh-h--CCEEEEEeCCHHHHHHHHHHHHH-cCCC-cEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTI-GLTLAH-R--VGMVIGIEMNASAVSDAHRNAEI-NGIK-NCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i-~L~LA~-~--~~~VigVEis~~AIe~Ar~NA~~-Ngi~-Nv~fi~gDae~ 660 (860)
...+|+|+|||.|.+ ++.+++ + ..+++|+|++++|++.|++++.. .++. +++|..+|+.+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~ 188 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD 188 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh
Confidence 678999999997744 455553 3 25899999999999999999964 7885 59999999865
No 192
>PRK01581 speE spermidine synthase; Validated
Probab=97.94 E-value=8.5e-05 Score=83.55 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=51.4
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHH-----Hc--CCCcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAE-----IN--GIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~-----~N--gi~Nv~fi~gDae~~~~ 663 (860)
....+||++|||+|.....+.++. .+|++||+++.+++.|+.... .. .-++++++.+|+.+++.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~ 221 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS 221 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH
Confidence 345689999999999888888764 799999999999999996311 11 23589999999998764
No 193
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.93 E-value=2.2e-05 Score=81.91 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.++.+|||+|||+|.++..|+.. ..+|+|||+|+.|++.|++++ .++.++.+|+.+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 345678999999999999999886 479999999999999998864 356788887543
No 194
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.93 E-value=0.00015 Score=78.81 Aligned_cols=63 Identities=5% Similarity=0.025 Sum_probs=52.1
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEEccHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING----IKNCRFVCAKAEDVMG 663 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ng----i~Nv~fi~gDae~~~~ 663 (860)
...+||+||||+|.++..++++ ..+|++||+++.+++.|++++...+ ..+++++.+|+.+++.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~ 140 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA 140 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH
Confidence 3459999999999999888876 4789999999999999999875432 2468999999887654
No 195
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.90 E-value=0.0001 Score=76.42 Aligned_cols=119 Identities=29% Similarity=0.466 Sum_probs=91.3
Q ss_pred CcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCcccccccc
Q 002990 603 TLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHA 680 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~ 680 (860)
..+||||||.|.+.+.+|... ..++|||+....+..|...+...+++|+.++++|+..++..++...
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~----------- 87 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPG----------- 87 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTT-----------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCC-----------
Confidence 489999999999999999875 6999999999999999999999999999999999999887764310
Q ss_pred ccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcC-C-
Q 002990 681 SEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDP-P- 758 (860)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDP-P- 758 (860)
+++ .--+-+=|| |
T Consensus 88 ----------------~v~-------------------------------------------------~i~i~FPDPWpK 102 (195)
T PF02390_consen 88 ----------------SVD-------------------------------------------------RIYINFPDPWPK 102 (195)
T ss_dssp ----------------SEE-------------------------------------------------EEEEES-----S
T ss_pred ----------------chh-------------------------------------------------eEEEeCCCCCcc
Confidence 000 001233355 3
Q ss_pred -----CCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhc
Q 002990 759 -----RGGLHPTVIKILRTHARLQRLVYISCNPETLVANAIELC 797 (860)
Q Consensus 759 -----R~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~ 797 (860)
|.=+.+..++.+.....+...||+--|-..++..+++..
T Consensus 103 ~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~ 146 (195)
T PF02390_consen 103 KRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQF 146 (195)
T ss_dssp GGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHH
T ss_pred cchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 445678999999887789999999999999999998875
No 196
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.90 E-value=4.5e-05 Score=80.37 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=66.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
...++-|+|-||....++.-|=.+|..| .|..+++.+ .+=+|||||+|.+-+||.-||..|||+.+.+|.|.|+.
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 3347889999999999999999999999 455566665 35579999999999999999999999999999999975
Q ss_pred c
Q 002990 237 V 237 (860)
Q Consensus 237 A 237 (860)
.
T Consensus 355 K 355 (360)
T KOG0145|consen 355 K 355 (360)
T ss_pred e
Confidence 4
No 197
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=1.6e-05 Score=90.03 Aligned_cols=80 Identities=26% Similarity=0.307 Sum_probs=70.1
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
-....+||.||+..++.+.|++.|..+ .+...++.. ++++|||||+|+++|+|.+|+..+||..+.|+.|.|..++
T Consensus 268 ~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 268 LQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred ccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 345679999999999999999999999 566656665 6889999999999999999999999999999999999887
Q ss_pred CCCc
Q 002990 239 PRSF 242 (860)
Q Consensus 239 pk~~ 242 (860)
.+..
T Consensus 348 r~~~ 351 (369)
T KOG0123|consen 348 RKED 351 (369)
T ss_pred hhcc
Confidence 4433
No 198
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.87 E-value=2.6e-05 Score=79.16 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhhcc---CCCCC-cEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEE
Q 002990 583 TLAAEKLYSLGGDWAD---LGPDT-LLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVC 655 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~~---l~~~~-~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~ 655 (860)
..+.+++++++.+... +.+.. +|||||||.|.+...|++.. ..++|||.++.||+.|+.-|++++++| |+|.+
T Consensus 45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 3456677777766654 33333 99999999999999999874 469999999999999999999999988 99999
Q ss_pred ccHHH
Q 002990 656 AKAED 660 (860)
Q Consensus 656 gDae~ 660 (860)
.|+.+
T Consensus 125 ~DI~~ 129 (227)
T KOG1271|consen 125 LDITD 129 (227)
T ss_pred eeccC
Confidence 98654
No 199
>PLN02366 spermidine synthase
Probab=97.87 E-value=0.00015 Score=80.46 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=54.7
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEEccHHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN--GI--KNCRFVCAKAEDVMGS 664 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~N--gi--~Nv~fi~gDae~~~~~ 664 (860)
....+||+||||.|.+...++++ ..+|+.||+++.+++.|++.+... ++ ++++++.+|+..++..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~ 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh
Confidence 45678999999999999999987 369999999999999999987642 23 4799999999887643
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=4e-05 Score=82.59 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 582 N~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
|...-..+++.+.+.+++.++..||++|+|.|.+|..|++++.+|++||+++..+...++... ...|++++.+|+.++
T Consensus 11 nFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~ 88 (259)
T COG0030 11 NFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF 88 (259)
T ss_pred ccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC
Confidence 344445557778888888889999999999999999999999999999999999999988765 346899999998653
No 201
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.84 E-value=7.1e-05 Score=83.11 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=63.3
Q ss_pred cCCCcccCCH---HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcC-C
Q 002990 574 SPTAFFQVNT---LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEING-I 648 (860)
Q Consensus 574 sp~sFFQvN~---~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ng-i 648 (860)
.|..++|..+ -.+...+..+...+...++.+|||+|||+|.+++.++..+ ..|+|||.++.|+..++...+..+ .
T Consensus 91 ~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~ 170 (314)
T TIGR00452 91 GPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND 170 (314)
T ss_pred CCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC
Confidence 3334445442 3344556667777777778999999999999999988775 579999999999987655433322 2
Q ss_pred CcEEEEEccHHHH
Q 002990 649 KNCRFVCAKAEDV 661 (860)
Q Consensus 649 ~Nv~fi~gDae~~ 661 (860)
.++.++.++++++
T Consensus 171 ~~v~~~~~~ie~l 183 (314)
T TIGR00452 171 KRAILEPLGIEQL 183 (314)
T ss_pred CCeEEEECCHHHC
Confidence 4688888887653
No 202
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.83 E-value=5.3e-05 Score=83.31 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=65.8
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
.|++.+++.+.+.++..+||.+||.|..+..+++.. .+|+|+|.++.|++.|++++.. .+++++++++..++...
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH
Confidence 466777888888888899999999999999999885 6999999999999999988765 56899999999987544
Q ss_pred H
Q 002990 665 L 665 (860)
Q Consensus 665 l 665 (860)
+
T Consensus 84 l 84 (296)
T PRK00050 84 L 84 (296)
T ss_pred H
Confidence 3
No 203
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.82 E-value=4.2e-05 Score=80.40 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=48.3
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI---------------KNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi---------------~Nv~fi~gDae~ 660 (860)
.++.+|||+|||.|..++.||.++..|+|||+|+.||+.|.. .+++ .+|+|+++|+.+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 105 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA 105 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCC
Confidence 356799999999999999999999999999999999998643 2222 258889988755
No 204
>PRK08317 hypothetical protein; Provisional
Probab=97.81 E-value=7.6e-05 Score=77.43 Aligned_cols=70 Identities=29% Similarity=0.387 Sum_probs=57.7
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
...+.+.+.+.++.+|||+|||+|.++..++... .+|+|+|+++.+++.|+.+.. ....++.|+.+|+..
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEeccccc
Confidence 3456667778888999999999999999999864 589999999999999999833 233579999988754
No 205
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.81 E-value=6.2e-05 Score=78.49 Aligned_cols=68 Identities=28% Similarity=0.570 Sum_probs=56.8
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
+...+...++.+|||+|||+|.+++.++... .+|+++|+++.+++.|++++..+++ .++.|+.+|+.+
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 114 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA 114 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc
Confidence 3334445567899999999999999999876 7999999999999999999887665 469999998755
No 206
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.80 E-value=0.00042 Score=74.57 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEE
Q 002990 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVC 655 (860)
Q Consensus 580 QvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~ 655 (860)
++-......|...+. . .+..+||++|+++|.-++++|... ++|+.+|.++...+.|+.|++..|+ ++|+++.
T Consensus 62 ~~~~~~g~lL~~l~~-~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~ 137 (247)
T PLN02589 62 TTSADEGQFLNMLLK-L---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE 137 (247)
T ss_pred ccCHHHHHHHHHHHH-H---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 444566666655443 2 245689999999999999999753 6999999999999999999999998 5799999
Q ss_pred ccHHHHHHHHh
Q 002990 656 AKAEDVMGSLL 666 (860)
Q Consensus 656 gDae~~~~~l~ 666 (860)
|++.+.|+.|.
T Consensus 138 G~a~e~L~~l~ 148 (247)
T PLN02589 138 GPALPVLDQMI 148 (247)
T ss_pred ccHHHHHHHHH
Confidence 99999998875
No 207
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.80 E-value=4.9e-05 Score=82.22 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=54.7
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
++..+.+.++.+|||+|||+|.++..|++. ..+|+|||+++.+++.|+.++.. ..++.|+++|+.
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~ 109 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDIL 109 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcc
Confidence 444557788899999999999999999875 35999999999999999988654 357999999875
No 208
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.77 E-value=6.6e-05 Score=79.87 Aligned_cols=70 Identities=23% Similarity=0.323 Sum_probs=60.8
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--------CEEEEEeCCHHHHHHHHHHHHHcCCC-c--EEEEEccHHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--------GMVIGIEMNASAVSDAHRNAEINGIK-N--CRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--------~~VigVEis~~AIe~Ar~NA~~Ngi~-N--v~fi~gDae~ 660 (860)
....++++.++.++||++||||-+++-+.+++ .+|+.+|+|+.|+..+++.++.-++. + +.|+++||++
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 34566777888999999999999999998874 57999999999999999999887773 3 8999999988
Q ss_pred H
Q 002990 661 V 661 (860)
Q Consensus 661 ~ 661 (860)
+
T Consensus 171 L 171 (296)
T KOG1540|consen 171 L 171 (296)
T ss_pred C
Confidence 4
No 209
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.76 E-value=8e-05 Score=84.88 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=58.8
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+..+.+.+.+.++.+|||+|||+|.+++.+++. ..+|+|||+++.+++.|++++. ++ ++++..+|+.+
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~ 224 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRD 224 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhh
Confidence 34566667778889999999999999999999986 4699999999999999999884 44 48888888654
No 210
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.74 E-value=4.3e-05 Score=77.78 Aligned_cols=59 Identities=27% Similarity=0.353 Sum_probs=55.9
Q ss_pred CcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
.++.|||+|+|.++..+|+.+.+|++||.+|.-...|.+|++.+|..|++++.|||.+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 57999999999999999999999999999999999999999999999999999998653
No 211
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.74 E-value=8.6e-05 Score=81.86 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=52.2
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEEccHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEING-IKNCRFVCAKAEDVM 662 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ng-i~Nv~fi~gDae~~~ 662 (860)
.++.+|||||||+|.++..|++.. .+|+|||+|+.|++.|++++.... --+|.++++|+.+.+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 456789999999999999998874 689999999999999999987532 125888999987643
No 212
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=2.8e-05 Score=84.98 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=60.9
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhccceeEEeec------cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~------~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
.+||||.+.+...++-++..|..||-. ++|.. ++.+|||||.|+-+|.|+-|++.|||..++||.|+|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPI-KSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPI-KSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCc-ceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 489999999999999999999999432 22222 6889999999999999999999999999999999996
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.73 E-value=4.6e-05 Score=83.79 Aligned_cols=67 Identities=22% Similarity=0.293 Sum_probs=50.4
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhh---------CCEEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEEccH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---------VGMVIGIEMNASAVSDAHRNAEINGIK--NCRFVCAKA 658 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---------~~~VigVEis~~AIe~Ar~NA~~Ngi~--Nv~fi~gDa 658 (860)
.+.+++...++.+|+|.+||+|.|.+.+.+. ...++|+|+++.++..|+.|+...|+. +..+..+|.
T Consensus 37 l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~ 114 (311)
T PF02384_consen 37 LMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDS 114 (311)
T ss_dssp HHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-T
T ss_pred HHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccc
Confidence 3444446677889999999999999988763 368999999999999999999888864 345777763
No 214
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.72 E-value=6.8e-05 Score=87.42 Aligned_cols=71 Identities=24% Similarity=0.342 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.|++. +.+.++.+|||+|||+|.+++.|++.. .+|+|||+++.|++.|++|+...+ .+++|+++|+..
T Consensus 254 ~te~l~~~----~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~ 325 (475)
T PLN02336 254 TTKEFVDK----LDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTK 325 (475)
T ss_pred HHHHHHHh----cCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCccc
Confidence 44444443 345678899999999999999999864 689999999999999999986333 479999998754
No 215
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.72 E-value=7.5e-05 Score=77.79 Aligned_cols=78 Identities=27% Similarity=0.312 Sum_probs=68.2
Q ss_pred cEEEeCCCcccCHHHHHH----Hhhhcc-ceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 167 SKCLVHLPRKWHSDNLKK----FLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk----~l~~~~-v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.|||.||+..+.-++||+ +|++|| |..+.+-+ .+.+|=|||.|.+.+.|..|+..|+|+.|=||.+++--|+.+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 899999999999999999 889996 54444443 677899999999999999999999999999999999988776
Q ss_pred Cccc
Q 002990 241 SFDK 244 (860)
Q Consensus 241 ~~~k 244 (860)
.+..
T Consensus 91 sdii 94 (221)
T KOG4206|consen 91 SDII 94 (221)
T ss_pred cchh
Confidence 6654
No 216
>PRK05785 hypothetical protein; Provisional
Probab=97.72 E-value=9.5e-05 Score=78.27 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=43.7
Q ss_pred CCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++.+|||+|||+|.++..+++. ..+|+|||+|+.|++.|+.. ..++++|+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~ 103 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEA 103 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhh
Confidence 3678999999999999999988 47999999999999999763 1356777764
No 217
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.72 E-value=0.00021 Score=76.95 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=61.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-c---eeEEee-ccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-I---LYKSAK-KKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v---~~~~ik-~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
++=..|||+-|++..++..|++-|+.|| | ..+.-+ .++++|||||.|+++-+...|.+..+|..++|+.|-|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3344699999999999999999999993 3 222222 27899999999999999999999999999999998774
No 218
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.71 E-value=1.8e-05 Score=55.63 Aligned_cols=26 Identities=46% Similarity=0.944 Sum_probs=23.9
Q ss_pred ccccccccccccCCCCCCCCCCCCcCc
Q 002990 81 HKTSLCSYFRKVGTCCHGSTCRYAHGE 107 (860)
Q Consensus 81 ~kt~lc~~~~~~g~c~~g~~C~~ahg~ 107 (860)
+|+.+|.+| ++|.|.+|+.|+|+|+.
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 789999999 77999999999999973
No 219
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.70 E-value=0.00011 Score=80.71 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=58.5
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAE 659 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae 659 (860)
..+.+.+.+.+..+|||+|||+|.+++.+++.. .+++++|. +.+++.|++|+...|+. +++++.+|+.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~ 209 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY 209 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCcc
Confidence 445555667778899999999999999999886 58999997 89999999999999984 6999999964
No 220
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.70 E-value=5.7e-05 Score=81.81 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=72.0
Q ss_pred cccccceEEEEE-CCeEEEEcC--CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHH-HH-hhCCEEEEE
Q 002990 555 NDVVEARIHDSI-SNLRFCISP--TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT-LA-HRVGMVIGI 629 (860)
Q Consensus 555 ~~~G~~~i~E~i-~gl~f~isp--~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~-LA-~~~~~VigV 629 (860)
.++|..-+.+.+ .|+.|.++| ..|...|...-.++..+.. .+..|.|||+|.|+|+++ +. ..++.|+|+
T Consensus 151 ~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc------~~eviVDLYAGIGYFTlpflV~agAk~V~A~ 224 (351)
T KOG1227|consen 151 PLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC------DGEVIVDLYAGIGYFTLPFLVTAGAKTVFAC 224 (351)
T ss_pred cccccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc------ccchhhhhhcccceEEeehhhccCccEEEEE
Confidence 456776666655 489999998 6788888766655444332 247899999999999993 33 346899999
Q ss_pred eCCHHHHHHHHHHHHHcCCC-cEEEEEcc
Q 002990 630 EMNASAVSDAHRNAEINGIK-NCRFVCAK 657 (860)
Q Consensus 630 Eis~~AIe~Ar~NA~~Ngi~-Nv~fi~gD 657 (860)
|.+|.+++..++|++.|++. .+.++.||
T Consensus 225 EwNp~svEaLrR~~~~N~V~~r~~i~~gd 253 (351)
T KOG1227|consen 225 EWNPWSVEALRRNAEANNVMDRCRITEGD 253 (351)
T ss_pred ecCHHHHHHHHHHHHhcchHHHHHhhhcc
Confidence 99999999999999999762 34444443
No 221
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.68 E-value=8.9e-05 Score=71.73 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=50.7
Q ss_pred cEEeeccCCcHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 604 LLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 604 ~VLDL~CGtG~i~L~LA~~~~--~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
++||+|||+|.+++.+++.+. +|+++|.++.+++.+++|++.|++.++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999998764 69999999999999999999999988999987643
No 222
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.68 E-value=0.00013 Score=78.43 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=57.2
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAE 659 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae 659 (860)
..|+-++++.+|.+||+.|.|+|.+++.|++.. ++|+.+|+.++.++.|++|++.+|+. ||++.+.|+.
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 356777899999999999999999999999864 69999999999999999999999995 8999999974
No 223
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.68 E-value=0.00018 Score=66.66 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=52.6
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc---cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADH---GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~---~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
.|=|+|||..++.+.|..+|.+. ...+..+.. +.+.|||||.|.+++.+.+..+.++|..|..
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 47799999999999999999865 333333333 4578999999999999999999999999974
No 224
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.67 E-value=0.00011 Score=77.67 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=48.7
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CcEEEEEccHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI---------------KNCRFVCAKAEDV 661 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi---------------~Nv~fi~gDae~~ 661 (860)
.++.+|||+|||.|..++.||.++..|+|||+++.||+.|.. .+++ .+|+++++|+.++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence 456799999999999999999999999999999999998742 3333 3588888887653
No 225
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.67 E-value=3.8e-05 Score=67.84 Aligned_cols=53 Identities=30% Similarity=0.539 Sum_probs=44.3
Q ss_pred EeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 606 FDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 606 LDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
||+|||+|..+..|+++ ..+|+|+|+++.+++.|+++.... ++.++.+|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhC
Confidence 79999999999999999 899999999999999999987653 455898886653
No 226
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.66 E-value=0.0001 Score=76.21 Aligned_cols=60 Identities=17% Similarity=0.361 Sum_probs=47.9
Q ss_pred CCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
.-..+||+|||.|.++..||.++.+++++|+++.||+.|++... +..||+|+++++.+..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~ 102 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW 102 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT--
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC
Confidence 34679999999999999999999999999999999999998765 5679999999976543
No 227
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.65 E-value=6.9e-05 Score=75.69 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=67.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeE--Eeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYK--SAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~--~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
-..+-+++||||-..++++.|-+.|+.+|+... +++. +.++|||||.|++-|..++||+.|||..+.++++.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 344578999999999999999999999977554 4333 5778999999999999999999999999999999999
Q ss_pred ecC
Q 002990 236 NVV 238 (860)
Q Consensus 236 ~A~ 238 (860)
-|.
T Consensus 173 ya~ 175 (203)
T KOG0131|consen 173 YAF 175 (203)
T ss_pred EEE
Confidence 885
No 228
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.64 E-value=0.00065 Score=71.73 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=57.5
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEE-ccHHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVC-AKAEDVMGS 664 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~-gDae~~~~~ 664 (860)
.+..+||++|.+.|.-++.||... ++++.||++++.++.|++|++..|+.+ ++++. ||+.+.+..
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 467899999999999999999764 589999999999999999999999976 88888 588887654
No 229
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00022 Score=72.57 Aligned_cols=59 Identities=17% Similarity=0.345 Sum_probs=51.2
Q ss_pred CCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
...++++|||+|.++-.|++.- ....++|+|+.|++..++.|+.|++ ++..++.|..+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~ 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSG 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhh
Confidence 5689999999999999998864 4688999999999999999999997 488888876543
No 230
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.64 E-value=0.00047 Score=67.64 Aligned_cols=58 Identities=29% Similarity=0.399 Sum_probs=48.4
Q ss_pred CCCCcEEeeccCCcHHHHHHHh-----h-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CcEEEEEcc
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAH-----R-VGMVIGIEMNASAVSDAHRNAEING--I-KNCRFVCAK 657 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~-----~-~~~VigVEis~~AIe~Ar~NA~~Ng--i-~Nv~fi~gD 657 (860)
.+...|+|+|||-|.++..|+. . .-+|+|||.++..++.|...++..+ + .++.+..++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGD 90 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccc
Confidence 5678999999999999999998 3 4699999999999999999998877 3 445555544
No 231
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.64 E-value=2.3e-05 Score=87.19 Aligned_cols=41 Identities=44% Similarity=0.718 Sum_probs=37.0
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCcCccccCCCC
Q 002990 74 SPSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRP 114 (860)
Q Consensus 74 ~~~~~~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr~~p 114 (860)
....+..|||.||.+|.++|.|+||.+|+|+|+..+++...
T Consensus 168 ~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~ 208 (332)
T KOG1677|consen 168 QVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASN 208 (332)
T ss_pred hhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccc
Confidence 44567899999999999999999999999999999998754
No 232
>PRK06202 hypothetical protein; Provisional
Probab=97.64 E-value=7.5e-05 Score=78.79 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=45.6
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV------GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~------~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+|||+|||+|.++..|++.. .+|+|||+++.|++.|+.++..++ +.+..+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~ 122 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---VTFRQAVSDE 122 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---CeEEEEeccc
Confidence 456789999999999999988632 389999999999999998865443 5566655433
No 233
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.63 E-value=0.00037 Score=70.80 Aligned_cols=75 Identities=23% Similarity=0.202 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhh------ccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CcEEE
Q 002990 585 AAEKLYSLGGDW------ADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING--I-KNCRF 653 (860)
Q Consensus 585 ~ae~L~~~i~~~------~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ng--i-~Nv~f 653 (860)
.+..|..++... .....+.+||+||||+|..|+.+|+. ..+|+.-|.++ +++.++.|++.|+ . .++.+
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v 101 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV 101 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC
Confidence 444455555442 34556789999999999999999998 68999999999 9999999999998 2 46777
Q ss_pred EEccHHH
Q 002990 654 VCAKAED 660 (860)
Q Consensus 654 i~gDae~ 660 (860)
...+..+
T Consensus 102 ~~L~Wg~ 108 (173)
T PF10294_consen 102 RPLDWGD 108 (173)
T ss_dssp EE--TTS
T ss_pred cEEEecC
Confidence 7766543
No 234
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.63 E-value=0.00018 Score=74.63 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=64.5
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc-cceeEEeec-cC----CcceEEEEeCCHHHHHHHHHHHcCCccC---CceeEEEec
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-KK----GMTVGFVKFESVEQLKNAVEELEGISIG---NKTLKVANV 237 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~-~r----~~gFgFVtF~s~Eea~kAIe~LnG~~~k---Gr~L~V~~A 237 (860)
.+||-|||.++...+|-.||..+ |-...-+|. .+ -+.||||+|.+..+|..|+..|||+.|+ |.+|++..|
T Consensus 36 TLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA 115 (284)
T KOG1457|consen 36 TLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA 115 (284)
T ss_pred eeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence 49999999999999999999988 544444443 22 2489999999999999999999999996 678999888
Q ss_pred CCCCccccC
Q 002990 238 VPRSFDKNI 246 (860)
Q Consensus 238 ~pk~~~k~~ 246 (860)
+.....|++
T Consensus 116 KSNtK~kr~ 124 (284)
T KOG1457|consen 116 KSNTKRKRR 124 (284)
T ss_pred hcCcccccC
Confidence 665444443
No 235
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.63 E-value=0.00015 Score=78.66 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-----GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-----~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
..+.+...+.+.+. ....+|||+|||+|.++..+++.. ..|+|+|+++.|++.|+++ ..++.|+.+|+.
T Consensus 70 l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~ 143 (272)
T PRK11088 70 LRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSH 143 (272)
T ss_pred HHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecc
Confidence 33344444444432 345679999999999999998764 2689999999999999765 257889999865
Q ss_pred H
Q 002990 660 D 660 (860)
Q Consensus 660 ~ 660 (860)
+
T Consensus 144 ~ 144 (272)
T PRK11088 144 R 144 (272)
T ss_pred c
Confidence 4
No 236
>PRK04148 hypothetical protein; Provisional
Probab=97.62 E-value=0.00038 Score=68.13 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=51.4
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcH-HHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGT-IGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~-i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+++.+.+...++.++||+|||+|. ++..|++.+..|+|+|+++.+++.|+.+ + +.++.+|+.+
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~ 69 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFN 69 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C---CeEEECcCCC
Confidence 44455555544556789999999996 9999999999999999999999988765 2 5778887543
No 237
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.62 E-value=9.6e-05 Score=81.92 Aligned_cols=62 Identities=29% Similarity=0.413 Sum_probs=55.8
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDV 661 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~~ 661 (860)
+-.+.+|||+|||+|.+++..|+.+ ++|+|||.+.-| +.|++.++.|++++ |+++.|.++++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence 4568899999999999999999875 799999988766 99999999999987 89999999875
No 238
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.60 E-value=0.0002 Score=80.35 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=54.8
Q ss_pred HHHHHHhhhccC-CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 588 KLYSLGGDWADL-GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 588 ~L~~~i~~~~~l-~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+...+.+.+.+ .++.+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|++++. ..++.++.+|+++
T Consensus 99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~ 171 (340)
T PLN02490 99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAED 171 (340)
T ss_pred HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHh
Confidence 333444444443 356799999999999999998764 689999999999999999865 3468899999865
No 239
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.59 E-value=0.00015 Score=84.50 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=51.3
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+..++...++.+|||+|||+|.++..|++.+.+|+|||+++.|++.++... ....++.|+++|+.
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~ 93 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVT 93 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEeccc
Confidence 334444456679999999999999999999999999999999998765422 22467888888874
No 240
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.58 E-value=5.4e-05 Score=83.53 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=65.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|+|++||..+++.+||..|++++ |..+.++. .+.+|||||+|.+++..+++... .-+++.|+.+.|..|.|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccc
Confidence 44899999999999999999999997 44344443 57899999999999988877654 78889999999999998
Q ss_pred CCcc
Q 002990 240 RSFD 243 (860)
Q Consensus 240 k~~~ 243 (860)
|...
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 8543
No 241
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.56 E-value=0.00018 Score=75.14 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=50.4
Q ss_pred cEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 002990 604 LLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (860)
Q Consensus 604 ~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae 659 (860)
+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+.++...|+ .+++|+.+|+.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~ 60 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA 60 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 69999999999999999875 5899999999999999999998888 46899998864
No 242
>PRK06922 hypothetical protein; Provisional
Probab=97.53 E-value=0.00024 Score=84.95 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.|++++...+. ++.++++|+.+
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~d 478 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAIN 478 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHh
Confidence 3457899999999999999998764 6999999999999999999876664 68999999866
No 243
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.51 E-value=0.00029 Score=72.73 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=54.3
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~---~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+...+...++.+|||+|||+|.++..+++... +++|+|+++.+++.++.+.. ...++.++.+|+.+
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~ 99 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEA 99 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhc
Confidence 34444445778999999999999999998753 89999999999999999876 33578999999765
No 244
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.50 E-value=0.00024 Score=73.24 Aligned_cols=65 Identities=17% Similarity=0.391 Sum_probs=52.0
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
+.|.+|+ .++.+|||||||.|.+...|... .-.++|||++++.+..+.+ +| +.++++|+++-|..
T Consensus 5 ~~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG---v~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 5 QIIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG---VSVIQGDLDEGLAD 70 (193)
T ss_pred HHHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC---CCEEECCHHHhHhh
Confidence 3466664 46899999999999999998874 5689999999999887765 35 45899999986544
No 245
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.48 E-value=0.00035 Score=72.68 Aligned_cols=72 Identities=25% Similarity=0.456 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+..+++.+.... .....+|||+|||+|.++..+++.. .+|+|+|+++.+++.++.++. .++.++.+|+++
T Consensus 18 ~~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~ 91 (240)
T TIGR02072 18 EMAKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEK 91 (240)
T ss_pred HHHHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhh
Confidence 34444544444321 2334689999999999999999875 468999999999999987654 478899998765
No 246
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.47 E-value=0.00012 Score=78.54 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=63.5
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccc-eeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGI-LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v-~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
+..-|++||||....+.++|+..|+++|- ..+.|. ++|+||-|+-.|++..||..|||.+|.|+.|+|.....|
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 34568999999999999999999999943 334433 589999999999999999999999999999999766543
No 247
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.46 E-value=0.0021 Score=68.45 Aligned_cols=118 Identities=22% Similarity=0.379 Sum_probs=94.0
Q ss_pred CcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCcccccccc
Q 002990 603 TLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHA 680 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~ 680 (860)
..+||||||.|.+.+.+|+.. ..++|||+....+..|..-+...+++|+.++++||.+++..+....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~----------- 118 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDG----------- 118 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCC-----------
Confidence 579999999999999999985 6899999999999999999999999999999999999987764320
Q ss_pred ccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCC--
Q 002990 681 SEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPP-- 758 (860)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPP-- 758 (860)
+++. -.+-+=||=
T Consensus 119 ----------------sl~~-------------------------------------------------I~i~FPDPWpK 133 (227)
T COG0220 119 ----------------SLDK-------------------------------------------------IYINFPDPWPK 133 (227)
T ss_pred ----------------CeeE-------------------------------------------------EEEECCCCCCC
Confidence 0000 011222331
Q ss_pred -----CCCCcHHHHHHHHhccCCCeEEEEecCchhhHHH-HHHh
Q 002990 759 -----RGGLHPTVIKILRTHARLQRLVYISCNPETLVAN-AIEL 796 (860)
Q Consensus 759 -----R~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD-~~~L 796 (860)
|.=+.+..++.+.....+...+|+.-+-..++.. +.+.
T Consensus 134 kRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~ 177 (227)
T COG0220 134 KRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEV 177 (227)
T ss_pred ccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHH
Confidence 5556788999997777899999999999999988 5443
No 248
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.46 E-value=0.00033 Score=83.00 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHhhhcc---CCCCCcEEeeccCCcHHHHHHHhhC----------CEEEEEeCCHHHHHHHHHHHHHcC
Q 002990 581 VNTLAAEKLYSLGGDWAD---LGPDTLLFDVCCGTGTIGLTLAHRV----------GMVIGIEMNASAVSDAHRNAEING 647 (860)
Q Consensus 581 vN~~~ae~L~~~i~~~~~---l~~~~~VLDL~CGtG~i~L~LA~~~----------~~VigVEis~~AIe~Ar~NA~~Ng 647 (860)
+....++.|++.+..... .....+|||.|||+|.|.+.++... ..++|+|+++.++..|+.|+...+
T Consensus 8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 557778888877654322 1145689999999999999988643 478999999999999999988765
Q ss_pred CCcEEEEEcc
Q 002990 648 IKNCRFVCAK 657 (860)
Q Consensus 648 i~Nv~fi~gD 657 (860)
.-.+.+.++|
T Consensus 88 ~~~~~i~~~d 97 (524)
T TIGR02987 88 LLEINVINFN 97 (524)
T ss_pred CCCceeeecc
Confidence 2234444444
No 249
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00016 Score=76.08 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=58.0
Q ss_pred hccCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCC--CcEEEEEccHHHHHHHH
Q 002990 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGI--KNCRFVCAKAEDVMGSL 665 (860)
Q Consensus 596 ~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~Ngi--~Nv~fi~gDae~~~~~l 665 (860)
.+.+..+.+|||-|.|-|..+++.+++++ +|+-||.++..++.|..|-=.-++ .+++++.||+.+++..+
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~ 201 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF 201 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC
Confidence 34567799999999999999999999886 999999999999999877332233 25899999999987654
No 250
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.45 E-value=8.8e-05 Score=81.89 Aligned_cols=80 Identities=11% Similarity=0.200 Sum_probs=67.4
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
..-+++|++|+|..+++.|+.-|.++ ++..+.+++ +|++||+||+|++++...+++.. .-+.+.||++.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 34579999999999999999999988 666677776 68999999999999998877665 3455899999999998
Q ss_pred CCCccc
Q 002990 239 PRSFDK 244 (860)
Q Consensus 239 pk~~~k 244 (860)
||.++.
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 886653
No 251
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00026 Score=73.91 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=51.9
Q ss_pred hccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 596 ~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
.+.+..-..|.|||||+|..+-.|+++. ..|+|||.|++|++.|+.. +.|++|..+|+..+
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w 87 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTW 87 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhc
Confidence 3455666789999999999999999985 7999999999999999543 56899999998764
No 252
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.41 E-value=0.00028 Score=68.27 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=63.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
+.-|+|-|+-...+++++...|..| .|....+.. +-.+|||.|.|++.++|++||+.|||.++.|.+|.|-.+-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 5669999999999999999999999 444444333 3457999999999999999999999999999999997764
No 253
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.41 E-value=0.00024 Score=75.49 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHH-HHHHH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSD-AHRNA 643 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~-Ar~NA 643 (860)
..+..|...+..+-....+.+|||+|||+|.++.+|++. +++|+|||+++.++.. .+.|.
T Consensus 58 r~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 58 RGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred hhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC
Confidence 455555544443322246779999999999999999998 5799999999977765 44443
No 254
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.38 E-value=0.00023 Score=76.96 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
....+++.+.+.+++.++..|||+|+|.|.++..|++.+++|++||+++..++..+.... .-.|++++.+|+.+
T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLK 87 (262)
T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTT
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhc
Confidence 344455556666677788999999999999999999999999999999999999988655 34689999999754
No 255
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.35 E-value=0.00056 Score=73.11 Aligned_cols=77 Identities=17% Similarity=0.319 Sum_probs=65.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeec-----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
+....+|+|-|||+.+.++||+.||++++ ...++.. +++.|-|=|+|...++|..||+++||...+|+.|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~-~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFG-ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhc-cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 45568899999999999999999999994 3333322 57779999999999999999999999999999998876
Q ss_pred cCC
Q 002990 237 VVP 239 (860)
Q Consensus 237 A~p 239 (860)
..+
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 643
No 256
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.31 E-value=0.00038 Score=77.99 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=64.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+...|+|+|||+.++-+-||+-|.++ .|.|..|+- ++++| .|-|.++|+|+.|+..|||..+.||.|+|.-
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4556789999999999999999999999 788888744 45555 8999999999999999999999999999863
No 257
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.25 E-value=0.0006 Score=70.07 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=44.3
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+|||+|||+|.++..++.. ...++|||+++.+++.|+. .+++++++|+.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~ 66 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDE 66 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhh
Confidence 35678999999999999999765 3578999999999998864 246788888765
No 258
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.24 E-value=0.00037 Score=73.69 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=61.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc----cceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH----GILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~----~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
.+..++|+-|-|-..++++-|.+.|.+| +-.+++-++ ++++|||||.|+++++...|+..|||.=++.|.|+.+
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 3346899999999999999999999988 333333333 6889999999999999999999999999999988754
No 259
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.24 E-value=0.00081 Score=76.55 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCCcccCCHHHHHHHHHHHhhhcc-----CCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHc
Q 002990 575 PTAFFQVNTLAAEKLYSLGGDWAD-----LGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 575 p~sFFQvN~~~ae~L~~~i~~~~~-----l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~N 646 (860)
...||...-..+.-|--.++.++. ....-++||.-||+|.=|+-.+.. ..+|++-|+++.|++.+++|++.|
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 467887655555554433322211 123458999999999999999987 379999999999999999999999
Q ss_pred CCCc--EEEEEccHHHHHH
Q 002990 647 GIKN--CRFVCAKAEDVMG 663 (860)
Q Consensus 647 gi~N--v~fi~gDae~~~~ 663 (860)
++.. +++.+.||..+|.
T Consensus 98 ~~~~~~~~v~~~DAn~ll~ 116 (377)
T PF02005_consen 98 GLEDERIEVSNMDANVLLY 116 (377)
T ss_dssp T-SGCCEEEEES-HHHHHC
T ss_pred cccCceEEEehhhHHHHhh
Confidence 9975 9999999988764
No 260
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.23 E-value=0.00036 Score=73.02 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=42.9
Q ss_pred HHhhhccCCC--CCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHH
Q 002990 592 LGGDWADLGP--DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 592 ~i~~~~~l~~--~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~ 641 (860)
.+++++.+.+ ..-|||+|||+|..+-.|...+...+|||||+.|++.|.+
T Consensus 39 RaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 39 RALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred HHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH
Confidence 3445555544 6789999999999999999988999999999999999986
No 261
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.20 E-value=2.6e-05 Score=70.87 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=41.1
Q ss_pred EeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 606 FDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 606 LDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
||+|||+|.++..++.. ..+++|+|+|+.|++.|++.+...+..+...+..+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 55 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDV 55 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeec
Confidence 79999999999999988 579999999999999999999888776666665543
No 262
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.20 E-value=0.00014 Score=80.94 Aligned_cols=42 Identities=48% Similarity=0.779 Sum_probs=37.4
Q ss_pred CCCCCCCcccccccccccccCCCCC-CCCCCCCcCccccCCCC
Q 002990 73 PSPSLHPLHKTSLCSYFRKVGTCCH-GSTCRYAHGEEELRIRP 114 (860)
Q Consensus 73 ~~~~~~~~~kt~lc~~~~~~g~c~~-g~~C~~ahg~~elr~~p 114 (860)
........|||.||.+|+++|+|.| |+.|+||||.+|||..-
T Consensus 122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~ 164 (332)
T KOG1677|consen 122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS 164 (332)
T ss_pred ccccCcccccCCcceeeecCccccccCchhhhcCCcccccccc
Confidence 3455568999999999999999999 99999999999999654
No 263
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.20 E-value=0.00068 Score=80.61 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=63.9
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.++||+||+.+.+.||+.+|++||- ..+|+...++++|||+|-+-.+|.+|+.+|+.+.+.++.|++..|.
T Consensus 423 TLwvG~i~k~v~e~dL~~~feefGe-iqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 423 TLWVGGIPKNVTEQDLANLFEEFGE-IQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeccccchhhHHHHHHHHHhccc-ceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4789999999999999999999933 3455667789999999999999999999999999999999999884
No 264
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.16 E-value=0.001 Score=77.37 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=49.4
Q ss_pred CCcEEeeccCCcHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRV------GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~------~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~ 661 (860)
+..|+|+|||+|.++...++.+ .+|+|||.++.|+..++..++.|+. +.|+++.+|++++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 5689999999999997776543 6999999999999888887788998 6799999998764
No 265
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.16 E-value=0.00086 Score=65.32 Aligned_cols=40 Identities=30% Similarity=0.544 Sum_probs=37.2
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~ 638 (860)
..++.+|||+|||+|.++..|++.+.+|+|+|+++.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh
Confidence 5678899999999999999999888899999999999988
No 266
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.15 E-value=0.00016 Score=79.67 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=40.3
Q ss_pred hhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHH
Q 002990 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638 (860)
Q Consensus 594 ~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~ 638 (860)
...+...+|+.|+|.+.|||.+.+..|..++.|+|.||+-.++..
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vra 245 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRA 245 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeec
Confidence 345567899999999999999999999999999999999999873
No 267
>PLN02823 spermine synthase
Probab=97.14 E-value=0.0032 Score=70.77 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=53.4
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEEccHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING----IKNCRFVCAKAEDVMG 663 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ng----i~Nv~fi~gDae~~~~ 663 (860)
...+||.||+|.|..+..+.++ ..+|++||+++..++.|++++..++ -++++++.+|+..++.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~ 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh
Confidence 3468999999999999988875 4789999999999999999876542 2579999999988763
No 268
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.13 E-value=0.00088 Score=71.16 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=62.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCc-cCC--ceeEEEec
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGIS-IGN--KTLKVANV 237 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~-~kG--r~L~V~~A 237 (860)
.-|++||.|.+.-+++|++.+|..+ .+..+.+.. +.++|++||.|.+.-|++.||..|+|.. +-| ..|.|..|
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec
Confidence 3479999999999999999999999 555666666 5789999999999999999999999976 555 46878777
Q ss_pred C
Q 002990 238 V 238 (860)
Q Consensus 238 ~ 238 (860)
.
T Consensus 99 D 99 (371)
T KOG0146|consen 99 D 99 (371)
T ss_pred c
Confidence 3
No 269
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.10 E-value=0.0011 Score=76.25 Aligned_cols=75 Identities=12% Similarity=0.214 Sum_probs=63.9
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec-cC---CcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-KK---GMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~-~r---~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
+-.+.|-+|...+-..+||.||++| .|.-.++.+ -+ -+-||||||.+.++|.++|+-|+-.++.||.|.|..|+-
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 4469999999999999999999999 444455555 23 357999999999999999999999999999999988753
No 270
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.10 E-value=0.0013 Score=71.39 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=48.2
Q ss_pred EEcCCCcccCCHHHHHHHHHHHhhh----ccCCCCCcEEeeccCCcH----HHHHHHhhC-------CEEEEEeCCHHHH
Q 002990 572 CISPTAFFQVNTLAAEKLYSLGGDW----ADLGPDTLLFDVCCGTGT----IGLTLAHRV-------GMVIGIEMNASAV 636 (860)
Q Consensus 572 ~isp~sFFQvN~~~ae~L~~~i~~~----~~l~~~~~VLDL~CGtG~----i~L~LA~~~-------~~VigVEis~~AI 636 (860)
.+..+.||.- ..+.+.|.+.+... .....+.+|||+|||+|- +++.|++.. .+|+|+|+|+.|+
T Consensus 67 ti~~T~FfR~-~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L 145 (264)
T smart00138 67 TTNETRFFRE-SKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL 145 (264)
T ss_pred hcCCCcccCC-cHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH
Confidence 3445666653 34555555544332 223345799999999995 666666542 4899999999999
Q ss_pred HHHHHHH
Q 002990 637 SDAHRNA 643 (860)
Q Consensus 637 e~Ar~NA 643 (860)
+.|++.+
T Consensus 146 ~~Ar~~~ 152 (264)
T smart00138 146 EKARAGI 152 (264)
T ss_pred HHHHcCC
Confidence 9999753
No 271
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.08 E-value=0.00033 Score=73.64 Aligned_cols=44 Identities=32% Similarity=0.644 Sum_probs=39.7
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~ 641 (860)
...+-.++||||||||..|..|..++.+++|||||..|++.|.+
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHE 165 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHh
Confidence 44456899999999999999999999999999999999998865
No 272
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.06 E-value=0.00045 Score=72.42 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=59.5
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
.++|||+||+...+++|..||.+++-.....++ .|||||.|.+.-+|+.||-.|||.++.|.++.|..|.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999433333222 48999999999999999999999999998877766643
No 273
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.01 E-value=0.00063 Score=80.40 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=65.4
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeecc----CCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKK----KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~----r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
...+|.|+|||+..+-.+++++|..| .+..+++.++ -++|||||.|-++.++..|++.|.+.-+=||.|....|.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 35699999999999999999999999 6666777663 347999999999999999999999998999998776663
No 274
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.96 E-value=0.0019 Score=68.65 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=50.5
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHH------------HcCCCcEEEEEccHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE------------INGIKNCRFVCAKAEDV 661 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~------------~Ngi~Nv~fi~gDae~~ 661 (860)
+.++.+||+.+||.|.-.+.||.++-+|+|||+|+.||+.+.+... ...-.+++++++|+.++
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 3456799999999999999999999999999999999999865210 01113689999998663
No 275
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.88 E-value=0.0027 Score=72.55 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=65.1
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
...+-|.+++|||.++++||.+||+.+.|....+.. +|..|=|||.|.++|+.++|+++ |=..+..|=|.|-.+.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 445679999999999999999999999887655444 57779999999999999999986 666677788999888654
No 276
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.87 E-value=0.0014 Score=69.28 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=49.3
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH-c-----------CCCcEEEEEccHHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI-N-----------GIKNCRFVCAKAEDV 661 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~-N-----------gi~Nv~fi~gDae~~ 661 (860)
....+.+||..|||.|.-.+.||.++.+|+|||+++.||+.|.+.... . ...+|++++||+.++
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 456678999999999999999999999999999999999998432111 0 113689999998663
No 277
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.84 E-value=0.0022 Score=70.45 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=53.2
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~ 661 (860)
-.+..|||+|||+|.+++..|..+ ++|++||.+ .|.+.|+.-.+.|++ ++|.++.|+++++
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc
Confidence 457899999999999999998764 899999986 578999999988887 5799999999875
No 278
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.84 E-value=0.00073 Score=76.39 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=72.0
Q ss_pred ECCeEEEEcCC-CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHH
Q 002990 566 ISNLRFCISPT-AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 566 i~gl~f~isp~-sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~ 644 (860)
-+|.+|.+.-+ .+| |+..- ..-..+..+ .+++..|.|+|||+|-+++++++..-.|++-|.++++++..+.|++
T Consensus 218 e~~~~Fk~DfskVYW--nsRL~-~Eherlsg~--fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 218 EGGERFKFDFSKVYW--NSRLS-HEHERLSGL--FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIK 292 (495)
T ss_pred cCCeeEEEecceEEe--eccch-hHHHHHhhc--cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcc
Confidence 35677877753 333 22111 111122222 3578899999999999999999999999999999999999999999
Q ss_pred HcCCC--cEEEEEccHHHHHH
Q 002990 645 INGIK--NCRFVCAKAEDVMG 663 (860)
Q Consensus 645 ~Ngi~--Nv~fi~gDae~~~~ 663 (860)
.|.++ +++++..|+.++++
T Consensus 293 lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 293 LNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred ccccchhheeeecccHHHHhh
Confidence 99994 59999999999985
No 279
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=96.83 E-value=0.0018 Score=74.21 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=61.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
...|||+|||...+..+|+.+|..+ .|....|.. .++..||||+|.+.+.++.||++= =..++|++|.|.+-++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 3449999999999999999999999 333222222 233389999999999999999985 7778999999988776
Q ss_pred CCcc
Q 002990 240 RSFD 243 (860)
Q Consensus 240 k~~~ 243 (860)
....
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5443
No 280
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.75 E-value=0.017 Score=68.34 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=91.3
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCcccccc
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~ 678 (860)
.+..+||+|||.|.+.+.+|... ..++|||+....+..|.+.+...++.|+.++++|++.++..+ ...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~-~~~--------- 416 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL-PNN--------- 416 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc-Ccc---------
Confidence 46789999999999999999885 589999999999999999999999999999999976544322 110
Q ss_pred ccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCC
Q 002990 679 HASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPP 758 (860)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPP 758 (860)
+++.+ -+-+=||=
T Consensus 417 ------------------sv~~i-------------------------------------------------~i~FPDPW 429 (506)
T PRK01544 417 ------------------SLDGI-------------------------------------------------YILFPDPW 429 (506)
T ss_pred ------------------cccEE-------------------------------------------------EEECCCCC
Confidence 00000 01111221
Q ss_pred -------CCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhc
Q 002990 759 -------RGGLHPTVIKILRTHARLQRLVYISCNPETLVANAIELC 797 (860)
Q Consensus 759 -------R~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~ 797 (860)
|.=+++..++.+.....+...||+.-|-..++..++...
T Consensus 430 pKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~ 475 (506)
T PRK01544 430 IKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELI 475 (506)
T ss_pred CCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 455678999999887889999999999999988876654
No 281
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.72 E-value=0.0044 Score=66.90 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=58.0
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
.+.+.+-+.+++...||++|-|||.++..|...+++|+|+|+++.|+....+..+-... ...+++.||+.+
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 34455556788999999999999999999999999999999999999988876653332 258888888643
No 282
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.72 E-value=0.0045 Score=64.93 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=46.2
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHH-------cCC--CcEEEEEccHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI-------NGI--KNCRFVCAKAE 659 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~-------Ngi--~Nv~fi~gDae 659 (860)
+++.+++.++..++|||||+|...+.+|.. +.+++|||+.+...+.|+.+.+. .|+ ..+.+..||+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 445567888999999999999998877754 67899999999999888765443 344 46888898864
No 283
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.59 E-value=0.02 Score=61.60 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=53.4
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC----CcEEEEEccHHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI----KNCRFVCAKAEDVMGS 664 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi----~Nv~fi~gDae~~~~~ 664 (860)
...+||=||-|.|.....+.++. .+|++||+++..++.|++-+..... ++++++.+|+..++.+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~ 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh
Confidence 56789999999999999998875 7999999999999999998765432 4799999999987654
No 284
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.55 E-value=0.0045 Score=73.22 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=63.9
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec-------cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~-------~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.-.+||+||+..++++.|-.-|..|| |-.++|+- .+.+.+|||.|-+-.++++|++.|+|..+.+..++...
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 45799999999999999999999883 33344443 36679999999999999999999999999999999876
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
+++-
T Consensus 254 gk~V 257 (877)
T KOG0151|consen 254 GKAV 257 (877)
T ss_pred cccc
Confidence 6443
No 285
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.54 E-value=0.0053 Score=63.22 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=35.7
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~ 641 (860)
.++..|||.|||+|+.++.+.+...+.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 568899999999999999999999999999999999999874
No 286
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.52 E-value=0.0043 Score=68.29 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=63.8
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeEE-------eec-----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKS-------AKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~-------ik~-----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L 232 (860)
.-.|||.|||-.++.+++.++|+++||.... +|. +.-+|=|-++|--.|..+-|++.|++..+.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 4469999999999999999999999775432 232 4557889999999999999999999999999999
Q ss_pred EEEecC
Q 002990 233 KVANVV 238 (860)
Q Consensus 233 ~V~~A~ 238 (860)
+|..|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999884
No 287
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.52 E-value=0.0063 Score=63.71 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHc
Q 002990 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~N 646 (860)
...+..+++....++.-...-+++|-|||.|.+.-.+.-. ...|+|.|+++.+++.|++|+...
T Consensus 33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 4667778888888876667789999999999987666533 379999999999999999998764
No 288
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.47 E-value=0.0033 Score=66.84 Aligned_cols=45 Identities=16% Similarity=0.468 Sum_probs=40.6
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~ 645 (860)
....+||+||.+|.+++.+|+.+ ..|+||||++..|+.|++|.+.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 45679999999999999999985 6899999999999999998764
No 289
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.39 E-value=0.011 Score=67.13 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=57.5
Q ss_pred hccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 596 ~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
.+.++++.+|||+||-.|.-+.++|... +.|+|-|.+..-++..+.|+.+.|++|....+.|..
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ 302 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGR 302 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcc
Confidence 3468899999999999999999988764 699999999999999999999999999988888754
No 290
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.39 E-value=0.0018 Score=72.28 Aligned_cols=34 Identities=32% Similarity=0.767 Sum_probs=27.6
Q ss_pred CcccccccccccccCCCCCCCCCCCCcCc----cccCCC
Q 002990 79 PLHKTSLCSYFRKVGTCCHGSTCRYAHGE----EELRIR 113 (860)
Q Consensus 79 ~~~kt~lc~~~~~~g~c~~g~~C~~ahg~----~elr~~ 113 (860)
.+---..|+||.. |.|.++.+|||.||- ++||+-
T Consensus 136 Th~sMkpC~ffLe-g~CRF~enCRfSHG~~V~lsslr~y 173 (486)
T KOG2185|consen 136 THESMKPCKFFLE-GRCRFGENCRFSHGLDVPLSSLRNY 173 (486)
T ss_pred cchhhccchHhhc-cccccCcccccccCcccchhhcccC
Confidence 3334467999987 889999999999997 677773
No 291
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.37 E-value=0.0057 Score=67.48 Aligned_cols=73 Identities=12% Similarity=0.285 Sum_probs=64.6
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.+|||-.+-.+.+++|+|..|+.| .|.++..-. +..+||||+.|.+....+.||.-||=++++|.-|+|..+-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 489999999999999999999999 555555544 4578999999999999999999999999999999998663
No 292
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.36 E-value=0.0033 Score=64.96 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=59.1
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
..+.+.+.+.-..-.+.+|||+|+|+|..++..++.+ +.|++.|+.+..+..++.|++.||+ ++.|...|.
T Consensus 65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~ 136 (218)
T COG3897 65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADL 136 (218)
T ss_pred HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccc
Confidence 3344556666566678999999999999999999875 7999999999999999999999997 577777653
No 293
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.30 E-value=0.023 Score=60.21 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=61.2
Q ss_pred CCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHHHHHhhhh
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVMGSLLKDY 669 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~~~~~l~~~~ 669 (860)
..+++||||.=||.-++.+|.. .++|+++|+++.+.+.+..-.+..|+. .|+|+.|++.+.+.+|+.++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG 145 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC
Confidence 4578999999999988888865 479999999999999999999999984 69999999999999998653
No 294
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.29 E-value=0.0036 Score=66.54 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=37.6
Q ss_pred CCCC-cEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHH
Q 002990 600 GPDT-LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 600 ~~~~-~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~ 641 (860)
.++. .++|+|||+|--++.+|.+.++|+|+|+++.|++.|++
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKK 73 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhc
Confidence 3444 89999999998889999999999999999999998875
No 295
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0074 Score=63.03 Aligned_cols=73 Identities=25% Similarity=0.325 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhcc--CCCCCcEEeeccCCcHHHHHHHhhC----CEEEEEeCCHHHHHHHHHHHHHcC----------CC
Q 002990 586 AEKLYSLGGDWAD--LGPDTLLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRNAEING----------IK 649 (860)
Q Consensus 586 ae~L~~~i~~~~~--l~~~~~VLDL~CGtG~i~L~LA~~~----~~VigVEis~~AIe~Ar~NA~~Ng----------i~ 649 (860)
|--++..+++++. +.++...||+|+|+|.++-+++... ..++|||..++.|+.+++|+...- -.
T Consensus 65 Ap~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 65 APHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred chHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 3456677777776 8899999999999999999999764 345999999999999999987532 12
Q ss_pred cEEEEEccH
Q 002990 650 NCRFVCAKA 658 (860)
Q Consensus 650 Nv~fi~gDa 658 (860)
++.|+.||.
T Consensus 145 ~l~ivvGDg 153 (237)
T KOG1661|consen 145 ELSIVVGDG 153 (237)
T ss_pred ceEEEeCCc
Confidence 466666664
No 296
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.16 E-value=0.028 Score=62.35 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=65.4
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
.|++.+++++.+.++..++|.-+|.|..+..+++.. .+|+|+|.++.|++.|++.+...+ .++.+++++..++...
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEH 84 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHH
Confidence 567778888888888899999999999999999864 799999999999999999887543 5799999998886543
No 297
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.14 E-value=0.0056 Score=66.82 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=40.8
Q ss_pred cEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 604 LLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 604 ~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+++|||||.|.+++-+... +..|.++|+++.|++..+.|... . ++++|+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~ 53 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITK 53 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCcccc
Confidence 5899999999998888766 46789999999999999888632 1 55666554
No 298
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.11 E-value=0.0038 Score=66.40 Aligned_cols=116 Identities=21% Similarity=0.377 Sum_probs=70.5
Q ss_pred cccccccccCCCCCCCCCCCCcCccccC---------CCCCCCCCcchHHHHHhhhhcccchhhhhhhhhHHhhhhcccc
Q 002990 84 SLCSYFRKVGTCCHGSTCRYAHGEEELR---------IRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMTEAVV 154 (860)
Q Consensus 84 ~lc~~~~~~g~c~~g~~C~~ahg~~elr---------~~p~~~~~~~ser~k~~~k~e~~Ek~~~~e~~~~~~~~~~~~~ 154 (860)
--|.|+.+.|.|.+|+.|.=.|...+.. +.|+++|.-.-. +....-..+.+.-+++-
T Consensus 16 v~c~fy~k~gacR~gdrcsR~h~kpt~s~t~ll~nmyq~P~~~~~~~d~---~~~~~~de~~q~~~def----------- 81 (260)
T KOG2202|consen 16 VNCSFYFKIGACRHGDRCSRLHEKPTFSQTVLLKNMYQNPENSWERRDA---QGQFLTDEELQRHEDEF----------- 81 (260)
T ss_pred cccchHHhhcccccccHHHHhhcccccchHHHHHHHHhCCCCCchhhhh---ccccccHHHHHHHHHHH-----------
Confidence 3599999999999999999999887766 356666542110 11111011111111111
Q ss_pred CCCCCCCCCccccEEEeCCCcccCHHHHHHHhh-hc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 155 DGDGDGDQDVELSKCLVHLPRKWHSDNLKKFLA-DH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 155 ~~d~~~~~~~~~ki~VgnLP~~~~~~~Lkk~l~-~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
.++|-..|+ ++ +|....|-. -.-.|=.||.|..+|+|++|++.|||--|.|
T Consensus 82 ------------------------yEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G 137 (260)
T KOG2202|consen 82 ------------------------YEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG 137 (260)
T ss_pred ------------------------HHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC
Confidence 122222222 33 222111111 1234778999999999999999999999999
Q ss_pred ceeEEEec
Q 002990 230 KTLKVANV 237 (860)
Q Consensus 230 r~L~V~~A 237 (860)
++|.+...
T Consensus 138 ~pi~ae~~ 145 (260)
T KOG2202|consen 138 RPIHAELS 145 (260)
T ss_pred Ccceeeec
Confidence 99977544
No 299
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.10 E-value=0.025 Score=51.06 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=46.9
Q ss_pred cEEEeCCCcccCHHHHHHHhh----hccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 167 SKCLVHLPRKWHSDNLKKFLA----DHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~----~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
-++|-|||-+.+...++.-|. .+|..+..+ +.+-|+|-|.++|.|.+|.+-|+|..+=|++|.|+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 389999999999887766555 457776664 3578999999999999999999999999999999865
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=96.10 E-value=0.014 Score=64.02 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=45.8
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~ 644 (860)
|...++... -.+|..|||.|||+|+.++.+.+...+.+|+|++++.++.|+..+.
T Consensus 197 L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 197 LLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 444444332 2578899999999999999999999999999999999999998865
No 301
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.013 Score=63.26 Aligned_cols=92 Identities=15% Similarity=0.311 Sum_probs=75.6
Q ss_pred CCeEEEEcC--CCcccCCHHHHHHHH----HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHH
Q 002990 567 SNLRFCISP--TAFFQVNTLAAEKLY----SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVS 637 (860)
Q Consensus 567 ~gl~f~isp--~sFFQvN~~~ae~L~----~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe 637 (860)
++.-|-+.| .-|-+.-+..++.+| ..|..++.+.+|.+||+-|.|+|.++..+|+.. ++++-.|....-.+
T Consensus 65 G~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ 144 (314)
T KOG2915|consen 65 GKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAE 144 (314)
T ss_pred CcEEEEecCChHHhhhhccCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHH
Confidence 334444444 455555556666666 467788899999999999999999999999987 79999999999999
Q ss_pred HHHHHHHHcCC-CcEEEEEccH
Q 002990 638 DAHRNAEINGI-KNCRFVCAKA 658 (860)
Q Consensus 638 ~Ar~NA~~Ngi-~Nv~fi~gDa 658 (860)
.|++-++..|+ +|+++..-|+
T Consensus 145 ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 145 KALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred HHHHHHHHhCCCcceEEEEeec
Confidence 99999999999 6899998875
No 302
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.047 Score=61.47 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=55.8
Q ss_pred CCcEEeeccCCcHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~~--~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
...|+|..||||.=|+-.|.-.. +|+.=|+|+.|++.++.|++.|...+...++.|+-.+|.+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~ 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE 117 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh
Confidence 56899999999999999987643 7999999999999999999999777888888999887765
No 303
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.94 E-value=0.1 Score=57.49 Aligned_cols=62 Identities=6% Similarity=0.092 Sum_probs=53.7
Q ss_pred CcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEEccHHHHHHH
Q 002990 603 TLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEING----IKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ng----i~Nv~fi~gDae~~~~~ 664 (860)
.+||=+|-|.|..+-.+.++. .+++.|||++..|+.|++-+.... -++++++.+|+.++++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~ 145 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD 145 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh
Confidence 589999999999999999985 899999999999999998766543 25799999999887654
No 304
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.88 E-value=0.0052 Score=64.60 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=59.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
.+++.|.|++-.+...+|++.|..+|.....+. ..+|+||.|.+++++.+|++.|+|.++.|+.|.+.
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 578999999999999999999999955433322 56899999999999999999999999999999993
No 305
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.82 E-value=0.029 Score=61.89 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=43.4
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKN 650 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~N 650 (860)
+..++..-.|.+|||+|||.|..+..|+..+ +.|+|||-+..-.-..+.=.+..|.++
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~ 165 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDP 165 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCc
Confidence 3344433467899999999999999998775 689999999888877655445555443
No 306
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.79 E-value=0.057 Score=55.82 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=50.9
Q ss_pred cEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 604 LLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 604 ~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+++|+|+|.|.-|++||-.. .+|+.||.+..-+...+.=+...|++|++++++.+++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 79999999999999998654 6899999999999999999999999999999999998
No 307
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.71 E-value=0.016 Score=66.47 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=55.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeEEe-----eccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSA-----KKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~i-----k~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..-|.|++||+.++++|+.+||+-+.|...-| ...|+-|=|||+|+++|.+++|+..- -..+.-|=|.|-.+
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh-re~iGhRYIEvF~S 179 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH-RENIGHRYIEVFRS 179 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH-HHhhccceEEeehh
Confidence 34599999999999999999999885554422 22466689999999999999998874 34456666777544
No 308
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=95.71 E-value=0.0058 Score=66.21 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=38.9
Q ss_pred CCCCCcccccccccccccCCCCCCCCCCCCcCccccCCCCCCC
Q 002990 75 PSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNT 117 (860)
Q Consensus 75 ~~~~~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr~~p~~~ 117 (860)
......|||.-|..|.+.|.|+||.+|.|+||..++--+++.+
T Consensus 266 k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~ 308 (351)
T COG5063 266 KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEA 308 (351)
T ss_pred cccccccccCCccchhhcccCccccccccccCChhhccccccc
Confidence 3446789999999999999999999999999999998888877
No 309
>PRK13699 putative methylase; Provisional
Probab=95.71 E-value=0.029 Score=59.70 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=41.7
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~ 645 (860)
.++..|||.|||+|+.++.+.+...+.+|+|+++.-++.|.+.++.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 4678999999999999999999899999999999999999887654
No 310
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.61 E-value=0.015 Score=62.14 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=60.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.-+++|+|+-+..+..++..-|+.+ ++.-+.+.+ +.++||+||.|.+.+.+.+|+. |||..+.|+.+.|...
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4469999999999999998888888 443333343 4678999999999999999999 9999999999988744
No 311
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.60 E-value=0.012 Score=61.46 Aligned_cols=62 Identities=27% Similarity=0.464 Sum_probs=54.9
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCcc
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI 227 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~ 227 (860)
..++|-||...+++++||.+|+.| |....++.-+.++..|||.|++-|+|..||.-|.|..+
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 359999999999999999999999 77666666677889999999999999999999998764
No 312
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.046 Score=60.51 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=65.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..++--++|=-|..-+++++|.-+|+.|| |..+.+.. +-+-.||||.|++.|..++|.=+|++..+..+.|.|-.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 44455599999999999999999999994 44444444 45668999999999999999999999999999999976
Q ss_pred cCC
Q 002990 237 VVP 239 (860)
Q Consensus 237 A~p 239 (860)
.+.
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 544
No 313
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.43 E-value=0.011 Score=69.06 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=65.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|+|+|||.+.++.++++++..+ .+..-...+ +-++||+|-.|-++-..+.||.-|||+...+++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 3346689999999999999999999988 222222222 57899999999999999999999999999999999987
Q ss_pred cCC
Q 002990 237 VVP 239 (860)
Q Consensus 237 A~p 239 (860)
|-+
T Consensus 366 A~~ 368 (500)
T KOG0120|consen 366 AIV 368 (500)
T ss_pred hhc
Confidence 754
No 314
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.43 E-value=0.042 Score=58.08 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=54.5
Q ss_pred CCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+.+++|+|+|.|.-|++||-. ..+|+-||....-+.-.+.=.+..|++|++++++.+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~ 129 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEF 129 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhc
Confidence 579999999999999998833 356999999999999999999999999999999999985
No 315
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.35 E-value=0.035 Score=62.36 Aligned_cols=59 Identities=19% Similarity=0.421 Sum_probs=41.6
Q ss_pred CCCcEEeeccCCcH-HHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc-------CC---CcEEEEEccHH
Q 002990 601 PDTLLFDVCCGTGT-IGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN-------GI---KNCRFVCAKAE 659 (860)
Q Consensus 601 ~~~~VLDL~CGtG~-i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~N-------gi---~Nv~fi~gDae 659 (860)
++.+|||||||=|. +.-+.....+.++|+|++..+|+.|++..+.. .. -.+.|+.+|+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f 131 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF 131 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc
Confidence 67899999999666 55555556799999999999999999988321 11 24788888864
No 316
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.31 E-value=0.044 Score=57.57 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=48.7
Q ss_pred EEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 002990 605 LFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (860)
Q Consensus 605 VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~ 661 (860)
|+|+||--|.+++.|.+.. .+|+++|+++..++.|+.|.+.+|+ +.+++..||-.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence 6899999999999999886 5999999999999999999999998 4699999996543
No 317
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.21 E-value=0.049 Score=59.50 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=45.7
Q ss_pred cEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 604 LLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 604 ~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
+++|||||.|.+++-|...+ ..|.++|+++.|++.-+.|.. ....+|+.++-..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~ 56 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS 56 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccc
Confidence 68999999999999988775 789999999999999999875 7788898776544
No 318
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.06 E-value=0.037 Score=59.16 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=44.1
Q ss_pred HhhhccCCCCC--cEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHH---HHHHHHHHHcCC------CcEEEEEccHHHH
Q 002990 593 GGDWADLGPDT--LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV---SDAHRNAEINGI------KNCRFVCAKAEDV 661 (860)
Q Consensus 593 i~~~~~l~~~~--~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AI---e~Ar~NA~~Ngi------~Nv~fi~gDae~~ 661 (860)
+...++++++. +|||.-+|-|.-++.||..+.+|+++|-|+... +++-+++....- .+++++.+|+.++
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 44556666664 899999999999999998888999999998765 444455544321 3577777776554
Q ss_pred H
Q 002990 662 M 662 (860)
Q Consensus 662 ~ 662 (860)
|
T Consensus 145 L 145 (234)
T PF04445_consen 145 L 145 (234)
T ss_dssp C
T ss_pred H
Confidence 3
No 319
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=94.91 E-value=0.044 Score=57.37 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=57.5
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHH-hhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEE-EEEccHHHH
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA-HRVGMVIGIEMNASAVSDAHRNAEINGIKNCR-FVCAKAEDV 661 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA-~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~-fi~gDae~~ 661 (860)
+.|++-+..++......-||++|||||.---..- ...-+|+++|.++.|-+.|.+.+..+...++. |+.++.+++
T Consensus 62 relFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l 138 (252)
T KOG4300|consen 62 RELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL 138 (252)
T ss_pred HHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC
Confidence 3455555566655555568999999997543333 23569999999999999999999999877888 999988763
No 320
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.73 E-value=0.039 Score=60.65 Aligned_cols=71 Identities=14% Similarity=0.326 Sum_probs=51.2
Q ss_pred EEEeCCCcccCHHHH------HHHhhhccc-eeEEeeccCC-----cceE--EEEeCCHHHHHHHHHHHcCCccCCceeE
Q 002990 168 KCLVHLPRKWHSDNL------KKFLADHGI-LYKSAKKKKG-----MTVG--FVKFESVEQLKNAVEELEGISIGNKTLK 233 (860)
Q Consensus 168 i~VgnLP~~~~~~~L------kk~l~~~~v-~~~~ik~~r~-----~gFg--FVtF~s~Eea~kAIe~LnG~~~kGr~L~ 233 (860)
+||-+||..+-.++. -++|.+||- .-..+.++-+ .+.+ ||||.+.|+|..+|...+|...+||.|+
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lk 196 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLK 196 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEe
Confidence 789999888877774 356666632 2222222211 1333 9999999999999999999999999999
Q ss_pred EEecC
Q 002990 234 VANVV 238 (860)
Q Consensus 234 V~~A~ 238 (860)
+.--.
T Consensus 197 atYGT 201 (480)
T COG5175 197 ATYGT 201 (480)
T ss_pred eecCc
Confidence 86443
No 321
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.52 E-value=0.2 Score=55.52 Aligned_cols=84 Identities=13% Similarity=0.064 Sum_probs=47.3
Q ss_pred EEcCCCcccCCHHHHHHHHHHHhhhccCCC-----CCcEEeeccCCcHH-HHHHHhh-CCEEEEEeCCHHHHHHHHHHHH
Q 002990 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGP-----DTLLFDVCCGTGTI-GLTLAHR-VGMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 572 ~isp~sFFQvN~~~ae~L~~~i~~~~~l~~-----~~~VLDL~CGtG~i-~L~LA~~-~~~VigVEis~~AIe~Ar~NA~ 644 (860)
.|+++.-... ......-+.++.+++.... .-++||+|+|.-.| .|..++. .-+++|.|+++.+++.|++|++
T Consensus 69 diP~~~LcP~-iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~ 147 (299)
T PF05971_consen 69 DIPEGRLCPP-IPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVE 147 (299)
T ss_dssp ---TTS-----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH
T ss_pred cCCCCCcCCC-CchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHH
Confidence 4444444332 2222233345555554322 35799999998876 3444443 5799999999999999999999
Q ss_pred Hc-CCC-cEEEEEc
Q 002990 645 IN-GIK-NCRFVCA 656 (860)
Q Consensus 645 ~N-gi~-Nv~fi~g 656 (860)
.| ++. .|+++..
T Consensus 148 ~N~~L~~~I~l~~~ 161 (299)
T PF05971_consen 148 RNPNLESRIELRKQ 161 (299)
T ss_dssp HT-T-TTTEEEEE-
T ss_pred hccccccceEEEEc
Confidence 99 884 5877754
No 322
>PHA01634 hypothetical protein
Probab=94.47 E-value=0.069 Score=51.95 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=43.6
Q ss_pred CCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGI 648 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi 648 (860)
.+.+|+|+|++.|.-+|+++-+ +++|+++|.++...+..+.|.+.|.|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 4689999999999999999876 58999999999999999999998855
No 323
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.43 E-value=0.11 Score=48.94 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=37.9
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGI 225 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~ 225 (860)
=|+|.|++..++-++||..|++++ ....|--.++..-|||-|.+++.|++|++++.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g-~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFG-EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS---EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcC-CcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 478888999999999999999994 3333344456778999999999999999998876
No 324
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.35 E-value=0.15 Score=56.13 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC----CEEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEEccHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRNAEINGIKNC-RFVCAKAEDV 661 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~----~~VigVEis~~AIe~Ar~NA~~Ngi~Nv-~fi~gDae~~ 661 (860)
...-+|||++||.|-.-+-+.... .+|.-.|.++..|+..++-++..|+.++ +|.++||.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 456789999999998877765543 5899999999999999999999999987 9999998763
No 325
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.32 E-value=0.088 Score=55.86 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=47.6
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
.+..........+|+|||+|+|.+++.+++.. -+++.+|. |..++.|+. .++|+|+.||..
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f 153 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF 153 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH
Confidence 34444556667789999999999999999875 58999998 888988887 578999999965
No 326
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.28 E-value=0.078 Score=63.07 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCccc-cEEEeCCCcccCHHHHHHHhhhccceeEEeecc-----CCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 162 QDVEL-SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKK-----KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 162 ~~~~~-ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~-----r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
.+++. -|-+.|+|+.++.+|+-+||..|.+....|.++ ..-|=+-|.|++.|+|..|..-|+|..+.+|++++.
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 34455 478999999999999999999997777666553 334788999999999999999999999999998864
No 327
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.19 E-value=0.053 Score=54.97 Aligned_cols=63 Identities=21% Similarity=0.364 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhccCC--CCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 585 AAEKLYSLGGDWADLG--PDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~--~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
++-+|++....+--+. ++.++|||||+.|.++.++..+. .+|+|||+.+. ..+.++.++++|.
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~ 72 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDI 72 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGG
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeeccc
Confidence 4456665554442133 45899999999999999999987 79999999877 3446788888886
No 328
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=94.16 E-value=0.14 Score=52.08 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
...|++|.+ .++...+.-||++|.|||.|+-.+.++. ..+++||.+++-+....+. .+.+.++.||+.
T Consensus 34 s~lA~~M~s----~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~ 104 (194)
T COG3963 34 SILARKMAS----VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAF 104 (194)
T ss_pred HHHHHHHHh----ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchh
Confidence 345555443 3456778889999999999999888775 5899999999999877653 245779999998
Q ss_pred HHH
Q 002990 660 DVM 662 (860)
Q Consensus 660 ~~~ 662 (860)
++-
T Consensus 105 ~l~ 107 (194)
T COG3963 105 DLR 107 (194)
T ss_pred hHH
Confidence 854
No 329
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=94.05 E-value=0.029 Score=58.69 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=56.6
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhccceeEEeec--cC--CcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK--KK--GMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~--~r--~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
..|+|+||...++++-|-++|-+.|-. .++++ ++ ...||||.|.++-...-|++.|||...-|+.|++.
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV-~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPV-YKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCce-EEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcc
Confidence 459999999999999999999876544 33344 21 12499999999999999999999999999988764
No 330
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.98 E-value=0.26 Score=55.26 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=61.0
Q ss_pred CcccCCHHHHHHHHHHHhhhcc-CCCCCcEEeeccCCcHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHHHHcCCC
Q 002990 577 AFFQVNTLAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHR------VGMVIGIEMNASAVSDAHRNAEINGIK 649 (860)
Q Consensus 577 sFFQvN~~~ae~L~~~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~------~~~VigVEis~~AIe~Ar~NA~~Ngi~ 649 (860)
.|++++++ .+.|-..+.+.+. +.++..|+|||||.|.-+..|... ....++||+|.++++.+..++..-.++
T Consensus 52 EYYptr~E-~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p 130 (319)
T TIGR03439 52 EYYLTNDE-IEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS 130 (319)
T ss_pred ccCChHHH-HHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC
Confidence 45566665 3344333333332 345668999999999986655432 246899999999999999999855566
Q ss_pred cEEE--EEccHHHHHHHH
Q 002990 650 NCRF--VCAKAEDVMGSL 665 (860)
Q Consensus 650 Nv~f--i~gDae~~~~~l 665 (860)
++.+ ++||..+.+.-+
T Consensus 131 ~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 131 HVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred CeEEEEEEecHHHHHhhc
Confidence 6666 899988876543
No 331
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.72 E-value=0.098 Score=58.29 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=65.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcccee-------------EEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILY-------------KSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG 228 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~-------------~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k 228 (860)
.....+|||-+||-+.+..++..+|.++++.- ...++.+.++=|-|+|.++-.|+.||+-++|..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 33356799999999999999999999884421 11111367899999999999999999999999999
Q ss_pred CceeEEEecCCCC
Q 002990 229 NKTLKVANVVPRS 241 (860)
Q Consensus 229 Gr~L~V~~A~pk~ 241 (860)
|.+|+|+.|..++
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999997664
No 332
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.57 E-value=0.13 Score=58.14 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=56.1
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+.+.++..|+|.||-.|.-+..+|.- -.+++|+|.+..-.+..+.-....|..+++.+.+|...
T Consensus 207 ~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~ 275 (413)
T KOG2360|consen 207 HLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLN 275 (413)
T ss_pred hhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccC
Confidence 3456677889999999999999998864 36999999999999999999999999888888887543
No 333
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.51 E-value=0.18 Score=54.69 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHh-hhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHH
Q 002990 581 VNTLAAEKLYSLGG-DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAH 640 (860)
Q Consensus 581 vN~~~ae~L~~~i~-~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar 640 (860)
-...|+..|..... .+..-....++||||+|.|.++..|+..+++|++-|+|+.|....+
T Consensus 73 fS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~ 133 (265)
T PF05219_consen 73 FSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLS 133 (265)
T ss_pred ecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHH
Confidence 34667777776442 2222224568999999999999999999999999999999966554
No 334
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.50 E-value=0.078 Score=59.30 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=59.7
Q ss_pred EEEeCCCcccCHHHHHHHhhhc--cceeEEee--c---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 168 KCLVHLPRKWHSDNLKKFLADH--GILYKSAK--K---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~--~v~~~~ik--~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
|.+++||+..+.+++-.||..+ .+.+.-+- . ++..|=|||.|+++|.+..|..+-+....|+|-+.|-.+
T Consensus 283 vRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 283 VRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred eEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 8899999999999999999988 55552222 2 567799999999999999999999999999999988755
No 335
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.40 E-value=0.076 Score=58.67 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=59.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeEEeec-------cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-------~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V 234 (860)
.|-+|||||-|+.+++||-+.|.+.|+.-..-+| +.++|||.|...++...++-++.|-..++.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3558999999999999999999988765333333 578999999999999999999999999999975444
No 336
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=93.39 E-value=0.05 Score=35.74 Aligned_cols=19 Identities=26% Similarity=0.873 Sum_probs=16.2
Q ss_pred ccccccccCCCCCCCCCCCCcC
Q 002990 85 LCSYFRKVGTCCHGSTCRYAHG 106 (860)
Q Consensus 85 lc~~~~~~g~c~~g~~C~~ahg 106 (860)
.|+||. .|.+|++|.|+|.
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 599883 3999999999994
No 337
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.32 E-value=0.11 Score=60.39 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=55.1
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~~~~ 663 (860)
.++-+|||..|++|.-+|-.|+.. .+|++-|.++.+|+..++|++.|++++ ++...+||--+|-
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~ 175 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMY 175 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHH
Confidence 456789999999999999999864 699999999999999999999998864 6777788776653
No 338
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=92.67 E-value=0.22 Score=54.55 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=45.3
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHH
Q 002990 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 580 QvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~ 644 (860)
..|..+...++..+..-+..-...+|||+|||.|+-...+... ..++++||.|+.|++.++.=++
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 3444455555554444333334568999999999977665543 4689999999999999887554
No 339
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.59 E-value=0.17 Score=56.47 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=41.3
Q ss_pred EEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 605 LFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 605 VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
|+|||||.|.+++-|...+ .-|.++|+++.|++.-+.|.. + .++.+|+.++-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~ 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKIS 53 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhh
Confidence 6899999999999987665 456789999999999888852 2 45668877653
No 340
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.55 E-value=0.69 Score=51.22 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=67.2
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
.|++.+++.+.+.++...+|.--|.|..+-.+.... ++++|+|.++.|++.|++.+..++ .++.++.++..++...
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEA 88 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHH
Confidence 577788888889999999999999999999988775 689999999999999999988877 6899999998776544
Q ss_pred H
Q 002990 665 L 665 (860)
Q Consensus 665 l 665 (860)
+
T Consensus 89 l 89 (314)
T COG0275 89 L 89 (314)
T ss_pred H
Confidence 3
No 341
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.50 E-value=0.12 Score=60.43 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=57.2
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~ 233 (860)
.+.|-|||..++.++|..+|+.| +|..+. .....+|.-||.|=+.-+|+.|++.||+.++.|+.|+
T Consensus 77 ~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 77 TLVVFNLPRSVSNDTLLRIFGAYGEIREIR-ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred eEEEEecCCcCCHHHHHHHHHhhcchhhhh-cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 49999999999999999999999 444311 2244578999999999999999999999999999987
No 342
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=92.42 E-value=0.092 Score=56.16 Aligned_cols=84 Identities=13% Similarity=0.182 Sum_probs=55.1
Q ss_pred eEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCC--cEEeeccCCcHHHHHHHhhC----CEEEEEeCCHHHHHHHHHH
Q 002990 569 LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT--LLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 569 l~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~--~VLDL~CGtG~i~L~LA~~~----~~VigVEis~~AIe~Ar~N 642 (860)
.-|.+.-+-||-. ..-|....-+++.+.... +||++|||+|...+++.+.. -.|++.|.++.||+..+.|
T Consensus 41 ~fy~~~~~rFfkd----R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~ 116 (264)
T KOG2361|consen 41 TFYKIHENRFFKD----RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKS 116 (264)
T ss_pred hhhhhccccccch----hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhc
Confidence 3344444555532 222333334444444433 79999999999999998764 4799999999999999998
Q ss_pred HHHcCCCcEEEEEcc
Q 002990 643 AEINGIKNCRFVCAK 657 (860)
Q Consensus 643 A~~Ngi~Nv~fi~gD 657 (860)
...+. .++.-...|
T Consensus 117 ~~~~e-~~~~afv~D 130 (264)
T KOG2361|consen 117 SGYDE-SRVEAFVWD 130 (264)
T ss_pred cccch-hhhccccee
Confidence 77654 344333333
No 343
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.28 E-value=0.12 Score=60.54 Aligned_cols=72 Identities=22% Similarity=0.176 Sum_probs=55.8
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccC---CceeEEEec
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG---NKTLKVANV 237 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k---Gr~L~V~~A 237 (860)
--|||.||-+-++..+||.+|...+..+...=+-+=+...||+|.+.|+|-+-+.+|||..|- +|-|-|-.+
T Consensus 445 nvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 445 NVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred ceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 349999999999999999999977333222111222456899999999999999999999994 567777555
No 344
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=92.00 E-value=0.37 Score=53.61 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=51.8
Q ss_pred cccEEEeCCCc--c--cC-------HHHHHHHhhhccceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCce
Q 002990 165 ELSKCLVHLPR--K--WH-------SDNLKKFLADHGILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (860)
Q Consensus 165 ~~ki~VgnLP~--~--~~-------~~~Lkk~l~~~~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~ 231 (860)
.-.|.|+||-. . -+ .++|+.-+.++|.. .++.. +.+.|.+-|+|+|.|+|+.+|+.|+|.-|.||.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v-~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQV-RKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCc-ceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 44688899821 1 12 12333445566543 33333 678899999999999999999999999999999
Q ss_pred eEEEec
Q 002990 232 LKVANV 237 (860)
Q Consensus 232 L~V~~A 237 (860)
|.+..-
T Consensus 344 l~A~i~ 349 (382)
T KOG1548|consen 344 LTASIW 349 (382)
T ss_pred EEEEEe
Confidence 987644
No 345
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.76 E-value=0.23 Score=51.97 Aligned_cols=68 Identities=15% Similarity=0.305 Sum_probs=55.9
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcC-------CCcEEEEEccHHHHHHHHhhh
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEING-------IKNCRFVCAKAEDVMGSLLKD 668 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ng-------i~Nv~fi~gDae~~~~~l~~~ 668 (860)
+.-.+.|||||-|.+.+.|+..+ .-|+|+||--...+..+..++..+ +.|+.++..++..+++++...
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k 136 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK 136 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh
Confidence 34568999999999999999886 579999997777777776666654 789999999999999887554
No 346
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.64 E-value=0.46 Score=54.60 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=46.2
Q ss_pred CcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEE
Q 002990 603 TLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVC 655 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~ 655 (860)
-.|||+|.|||.+++.+++.+ ..|+|+|.-..|+..|++=...||. ++|.++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 469999999999999988764 6899999999999999999999998 4566554
No 347
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.43 E-value=0.17 Score=57.25 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=59.2
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCc-cCCceeEEEecCCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGIS-IGNKTLKVANVVPR 240 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~-~kGr~L~V~~A~pk 240 (860)
++|++||....+..+|..+|....+....--. -..||+||...++-.+.+||+.|+|.. ..|+.+.|....|+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl-~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee-eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 68999999999999999999976333222111 124899999999999999999999975 89999998766664
No 348
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=0.24 Score=49.46 Aligned_cols=74 Identities=27% Similarity=0.269 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccH
Q 002990 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKA 658 (860)
Q Consensus 581 vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDa 658 (860)
..++|.+..++ ++.-.+..+++|||+|.|-|-+..++.+ ...+|||+++-.+..++..+-+.|+ ....|...|.
T Consensus 56 AtteQv~nVLS----ll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 56 ATTEQVENVLS----LLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL 131 (199)
T ss_pred ccHHHHHHHHH----HccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 34556555544 4334555679999999999999999987 7889999999999999999988887 4566766553
No 349
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.34 E-value=0.4 Score=51.52 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=36.6
Q ss_pred CCCcEEeeccCCcHHHHHHH--hhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLA--HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA--~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~ 663 (860)
.|.+||-+|=+- .+|+++| ...++|+.+|+++..++..++.|+..|++ ++.+..|+.+-++
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP 106 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLP 106 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCC
Confidence 467787666332 3344444 45689999999999999999999999997 9999988765443
No 350
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.29 E-value=0.36 Score=54.21 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=47.9
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc--------cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH--------GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG 224 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~--------~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG 224 (860)
.-|.+++||++.++.|+..||... +|.+++..-+|.-|=|||.|..+|+|+.|+.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq 228 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQ 228 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHH
Confidence 348899999999999999999622 55555544477779999999999999999987443
No 351
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=91.20 E-value=0.41 Score=53.32 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=48.1
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcC-C-C----cEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEING-I-K----NCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ng-i-~----Nv~fi~gDae~ 660 (860)
.++..++|||||-|.-.+-.-+. ...++|+||...+|++|+...+... . + .+.|+++|...
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 35667999999999988777655 3799999999999999998876432 1 1 48999998754
No 352
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.20 E-value=0.69 Score=41.52 Aligned_cols=55 Identities=31% Similarity=0.508 Sum_probs=38.2
Q ss_pred EEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 605 LFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 605 VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++|++||+|... .++... ..++|+|+++.++..++......+...+.++.++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999976 444433 3899999999999996655543222126777776543
No 353
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=91.16 E-value=0.61 Score=52.67 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhc-------cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 002990 583 TLAAEKLYSLGGDWA-------DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~-------~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~ 655 (860)
...+-+|.+....+. .+.++.++|||||++|.++..|++++.+|+|||..+-+ . + ...-.+|..+.
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-~----~--L~~~~~V~h~~ 258 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-Q----S--LMDTGQVEHLR 258 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-H----h--hhCCCCEEEEe
Confidence 344445555444332 24678999999999999999999999999999955422 1 1 12335788988
Q ss_pred ccHHH
Q 002990 656 AKAED 660 (860)
Q Consensus 656 gDae~ 660 (860)
+|...
T Consensus 259 ~d~fr 263 (357)
T PRK11760 259 ADGFK 263 (357)
T ss_pred ccCcc
Confidence 87644
No 354
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.08 E-value=0.42 Score=56.58 Aligned_cols=66 Identities=24% Similarity=0.375 Sum_probs=52.1
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEcc
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV------GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAK 657 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~------~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gD 657 (860)
.+.+.+.+.+..+|+|.+||+|.+-+..++.. ..++|.|+++.....|+.|+-.+|+. ++....+|
T Consensus 177 liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 177 LIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred HHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 33444444566799999999999988877654 45899999999999999999999997 45555554
No 355
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=90.76 E-value=0.34 Score=54.29 Aligned_cols=43 Identities=19% Similarity=0.460 Sum_probs=33.7
Q ss_pred CCCCCCC--CcccccccccccccCCCCCCCCCCCCcCccccCCCCCC
Q 002990 72 SPSPSLH--PLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDN 116 (860)
Q Consensus 72 ~~~~~~~--~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr~~p~~ 116 (860)
+...... ..+++.+|+||.+ |.|..|+.|-|+|-. +|...|.-
T Consensus 64 ~~~~~~~~~~~~~~~vcK~~l~-glC~kgD~C~Flhe~-~~~k~rec 108 (325)
T KOG1040|consen 64 CPKSHNDVSDSRGKVVCKHWLR-GLCKKGDQCEFLHEY-DLTKMREC 108 (325)
T ss_pred CccccCCccccCCceeehhhhh-hhhhccCcCcchhhh-hhcccccc
Confidence 3444444 4899999999977 999999999999987 77665543
No 356
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.25 E-value=0.34 Score=44.64 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=21.1
Q ss_pred EeeccCCcHHHHHHHhhC-----CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHHHH
Q 002990 606 FDVCCGTGTIGLTLAHRV-----GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGSL 665 (860)
Q Consensus 606 LDL~CGtG~i~L~LA~~~-----~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~~~~l 665 (860)
|++|+..|..++.+++.. .++++||..+. .+.++++++..++ .+++++.++..+.+.++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~ 65 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSL 65 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHc
Confidence 588989999988887653 27999999996 4455555555565 47999999998887765
No 357
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=90.09 E-value=0.37 Score=52.55 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=48.0
Q ss_pred CCcEEeeccCCcHHH--HHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 002990 602 DTLLFDVCCGTGTIG--LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~--L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l 665 (860)
+..|+=+| ---..| +.|..+.++|..|||++..|....+-|+..|++|++.+.-|+...+++-
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~ 217 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED 217 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHH
Confidence 34455555 333334 4455667999999999999999999999999999999999877766543
No 358
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=89.98 E-value=0.29 Score=53.53 Aligned_cols=38 Identities=45% Similarity=0.832 Sum_probs=33.8
Q ss_pred CCCCCcccc--cccccccccCCCCC---CCCCCCC---cCccccCC
Q 002990 75 PSLHPLHKT--SLCSYFRKVGTCCH---GSTCRYA---HGEEELRI 112 (860)
Q Consensus 75 ~~~~~~~kt--~lc~~~~~~g~c~~---g~~C~~a---hg~~elr~ 112 (860)
-...++||| .||.-|.+.|+|++ |+.|+|| ||-.||-.
T Consensus 220 e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~ 265 (351)
T COG5063 220 EQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS 265 (351)
T ss_pred hccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccc
Confidence 345799999 99999999999999 9999999 99777754
No 359
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.83 E-value=0.74 Score=48.88 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=51.4
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKA 658 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDa 658 (860)
.+..++|+||--|.+..+|-+. +..++++|+++..++.|.+|...+++ +.++..++|.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg 76 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG 76 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC
Confidence 4556999999999999999986 47999999999999999999999998 5688888875
No 360
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=89.77 E-value=0.41 Score=53.37 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=56.2
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~ 663 (860)
.|.+.+++++.+.++..++|.--|.|..+..+.+.. .+|+|+|.++.|++.|++++... -.++.++.++..++-.
T Consensus 7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~ 83 (310)
T PF01795_consen 7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDE 83 (310)
T ss_dssp TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHH
T ss_pred ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHH
Confidence 466778888888889999999999999999998763 79999999999999998876644 3579999998776544
No 361
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=89.77 E-value=0.097 Score=56.82 Aligned_cols=33 Identities=33% Similarity=0.752 Sum_probs=26.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCcCccccCC
Q 002990 79 PLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRI 112 (860)
Q Consensus 79 ~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr~ 112 (860)
.--|+-+|-|| +.|.|..|+.|.|+|+...-|.
T Consensus 88 vDPKSvvCafF-k~g~C~KG~kCKFsHdl~~~~k 120 (343)
T KOG1763|consen 88 VDPKSVVCAFF-KQGTCTKGDKCKFSHDLAVERK 120 (343)
T ss_pred CCchHHHHHHH-hccCCCCCCcccccchHHHhhh
Confidence 34478899999 5599999999999998765443
No 362
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=89.60 E-value=1 Score=48.66 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEcc
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gD 657 (860)
.+.+|..+...+ ....+|+|||||.=-++++..... ..++|+||+..+++....-....++ +.++...|
T Consensus 92 Ld~fY~~if~~~--~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~D 162 (251)
T PF07091_consen 92 LDEFYDEIFGRI--PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRD 162 (251)
T ss_dssp HHHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-
T ss_pred HHHHHHHHHhcC--CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEee
Confidence 455677676653 346789999999999999887653 5999999999999999998888886 35555554
No 363
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.80 E-value=0.67 Score=48.77 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~---~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++-+|.+...++--+.++..|+||||-.|.-+..+++..+ .|+|||+.+-. -+.+|.|+.+|+.+
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~ 96 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITD 96 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccC
Confidence 45556666666664457789999999999999999998864 49999998754 35679999999753
No 364
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.59 E-value=0.61 Score=40.95 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=37.4
Q ss_pred cccCHHHHHHHhhhc-cceeEEeecc-CCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 175 RKWHSDNLKKFLADH-GILYKSAKKK-KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 175 ~~~~~~~Lkk~l~~~-~v~~~~ik~~-r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..++..+|..+|.+. ++....+-.. -...|.||.... +.++++++.|+|..++|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 456788999999866 6665544442 245799999965 5889999999999999999999865
No 365
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=88.44 E-value=0.43 Score=51.22 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=50.0
Q ss_pred EEEeCCCcccCHHHHHHHhhhccc-eeEEeec------------cCC----cceEEEEeCCHHHHHHHHHHHcCCccCCc
Q 002990 168 KCLVHLPRKWHSDNLKKFLADHGI-LYKSAKK------------KKG----MTVGFVKFESVEQLKNAVEELEGISIGNK 230 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~~v-~~~~ik~------------~r~----~gFgFVtF~s~Eea~kAIe~LnG~~~kGr 230 (860)
||+.|||.+|+...|+.+|+.||. --+.+.. +++ ..=|.|.|.+.-.|....+.|||..++|+
T Consensus 77 vylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggk 156 (278)
T KOG3152|consen 77 VYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGK 156 (278)
T ss_pred EEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 999999999999999999999832 1111111 111 12357999999999999999999999997
Q ss_pred e
Q 002990 231 T 231 (860)
Q Consensus 231 ~ 231 (860)
+
T Consensus 157 k 157 (278)
T KOG3152|consen 157 K 157 (278)
T ss_pred C
Confidence 5
No 366
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=88.43 E-value=2.7 Score=47.69 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=52.8
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHH---cC--C--CcEEEEEccHHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI---NG--I--KNCRFVCAKAEDVMGS 664 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~---Ng--i--~Nv~fi~gDae~~~~~ 664 (860)
..-.++|=||.|-|.-...|.+. ..+|+-||++|.||+.+++|.-. |+ + ++++++..|+..++++
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~ 361 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT 361 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh
Confidence 44578999999999998888876 47999999999999999976443 22 2 3699999999887654
No 367
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.39 E-value=0.8 Score=51.38 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=45.2
Q ss_pred CcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 002990 603 TLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~ 663 (860)
.+++|||||.|.+.+-+...+ .-+.++|+++.|++.-+.|... ..++.+|+.++..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~ 60 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDG 60 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcCh
Confidence 579999999999998887765 7899999999999998888643 4566777666543
No 368
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=88.29 E-value=0.13 Score=54.25 Aligned_cols=33 Identities=42% Similarity=0.815 Sum_probs=29.2
Q ss_pred CcccccccccccccCCCCCCCCCCCCcCccccCC
Q 002990 79 PLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRI 112 (860)
Q Consensus 79 ~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr~ 112 (860)
.--||-.|..| ..+.|..|+.|.||||-+|.|.
T Consensus 81 vdpK~~vcalF-~~~~c~kg~~ckF~h~~ee~r~ 113 (299)
T COG5252 81 VDPKTVVCALF-LNKTCAKGDACKFAHGKEEARK 113 (299)
T ss_pred cCchhHHHHHh-ccCccccCchhhhhcchHHHhh
Confidence 34589999999 6699999999999999998886
No 369
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=88.26 E-value=1.2 Score=46.53 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHh-hhc---cCCCCCcEEeeccCCc----HHHHHHHhh----CC---EEEEEeCCHHHHHHHHH
Q 002990 581 VNTLAAEKLYSLGG-DWA---DLGPDTLLFDVCCGTG----TIGLTLAHR----VG---MVIGIEMNASAVSDAHR 641 (860)
Q Consensus 581 vN~~~ae~L~~~i~-~~~---~l~~~~~VLDL~CGtG----~i~L~LA~~----~~---~VigVEis~~AIe~Ar~ 641 (860)
-+..+.+.|.+.++ .++ .....-+||.+||++| ++++.|... .. +|+|.|+|+.+++.|++
T Consensus 7 Rd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 7 RDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp TTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 45667777777776 333 1224568999999999 555555551 22 89999999999999975
No 370
>PRK00536 speE spermidine synthase; Provisional
Probab=88.26 E-value=7.7 Score=42.48 Aligned_cols=44 Identities=7% Similarity=-0.228 Sum_probs=39.6
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA 643 (860)
....+||=+|.|-|.....+.++-.+|+.|||++..|+.+++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~l 114 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFF 114 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHC
Confidence 34578999999999999999999779999999999999999843
No 371
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.25 E-value=0.31 Score=50.04 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=44.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhh-ccc----eeEE---eec--cC-CcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLAD-HGI----LYKS---AKK--KK-GMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~-~~v----~~~~---ik~--~r-~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
+....||.|++||..+++++|...+.. ++- .+.. -.+ +. .-.-|||.|.+.+++...++.++|+.|-.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 345679999999999999999996665 211 1111 111 11 12568999999999999999999999854
No 372
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.11 E-value=1.4 Score=47.83 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=43.6
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~N 646 (860)
....+..|||.++|+|+.++.........+|+|+++.-++.+.+.....
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 3467889999999999999999898999999999999999998877653
No 373
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=88.10 E-value=0.58 Score=56.04 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=53.3
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V 234 (860)
-|.++|||+..+..|++.||+-+.|..--+-+ +.-.|=|||.|.|.|+|.-|+-+ ++-.++|-.++.
T Consensus 4 IIRLqnLP~tAga~DIR~FFSGL~IPdGgVHIIGGe~GeaFI~FsTDeDARlaM~k-dr~~i~g~~VrL 71 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFSGLKIPDGGVHIIGGEEGEAFIGFSTDEDARLAMTK-DRLMIHGAEVRL 71 (944)
T ss_pred EEEecCCcccccchHHHHhhcccccCCCceEEecccccceEEEecccchhhhhhhh-cccceecceEEE
Confidence 47899999999999999999977555443333 55679999999999999999877 555577765554
No 374
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.09 E-value=0.85 Score=48.96 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHH
Q 002990 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVS 637 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe 637 (860)
+..+..|...+..+--..++..+||+|+-||.|+.+|.++ +++|+|||..-..+.
T Consensus 61 SRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~ 116 (245)
T COG1189 61 SRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH 116 (245)
T ss_pred ccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC
Confidence 3466677665555544457889999999999999999988 689999999764443
No 375
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.49 E-value=0.47 Score=52.37 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=63.0
Q ss_pred cccEE-EeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 165 ELSKC-LVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 165 ~~ki~-VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
...++ |+||+..++.++|+..|... .+..+++.. ...+|||||.|.+-.....|+.. ++..+.|+.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44566 99999999999999777766 344333333 46689999999999999999988 8999999999998887
Q ss_pred CCCcc
Q 002990 239 PRSFD 243 (860)
Q Consensus 239 pk~~~ 243 (860)
|+++.
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 77554
No 376
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=86.68 E-value=2 Score=45.48 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=59.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k-Gr~L~V~~A 237 (860)
..+..-+++.|||...+.+-+..+|.++ |....+.. -...+.|||.|.++-++..|.+.|.|..+- +-.++|..|
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i-~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLI-PPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEec-cCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 3445569999999999999999999988 44433322 223589999999999999999999999886 567777655
No 377
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=86.45 E-value=0.74 Score=49.04 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=37.3
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~ 641 (860)
|..++.+++......+++|+|||+|.+++.+...+..|+.-|+++..+...+.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHH
Confidence 45556666543267899999999999999998888999999999998877763
No 378
>PRK10458 DNA cytosine methylase; Provisional
Probab=86.12 E-value=1.8 Score=51.09 Aligned_cols=58 Identities=19% Similarity=0.082 Sum_probs=43.5
Q ss_pred CCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
.-+++|||||.|.+++-+-..+ ..|.++|+++.|++.-+.|.. ...+...+.+|+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhC
Confidence 4589999999999999886654 578899999999998888742 112345556776654
No 379
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=85.90 E-value=1.2 Score=52.49 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=47.4
Q ss_pred EEEeCCCcccCHH---HH----HHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCC-ceeEEE
Q 002990 168 KCLVHLPRKWHSD---NL----KKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGN-KTLKVA 235 (860)
Q Consensus 168 i~VgnLP~~~~~~---~L----kk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG-r~L~V~ 235 (860)
|.|-|+|- ++.+ -| .|+|+++| +.-..... +..+||.|+.|.+..+|+.||+.|||+.+.. -++.|+
T Consensus 61 Vvv~g~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 61 VVVDGAPV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred EEECCCcc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 77888874 3333 33 44555553 22122221 5688999999999999999999999999865 477776
Q ss_pred e
Q 002990 236 N 236 (860)
Q Consensus 236 ~ 236 (860)
.
T Consensus 140 ~ 140 (698)
T KOG2314|consen 140 L 140 (698)
T ss_pred h
Confidence 3
No 380
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.22 E-value=1.5 Score=51.65 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=49.0
Q ss_pred EEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcC--CccCCceeEEE
Q 002990 168 KCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG--ISIGNKTLKVA 235 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG--~~~kGr~L~V~ 235 (860)
|.|+-||...-.+++|-||..- --.+....-...-+| ||||+++++|++|.+.|.- ++|.||.|.++
T Consensus 178 vilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 178 VILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred EEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 7789999999999999999842 122222222222333 9999999999999999876 55889887643
No 381
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=84.74 E-value=0.34 Score=50.06 Aligned_cols=32 Identities=19% Similarity=0.767 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCCCCCCCCCcCccccCC
Q 002990 81 HKTSLCSYFRKVGTCCHGSTCRYAHGEEELRI 112 (860)
Q Consensus 81 ~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr~ 112 (860)
|..-.|+-|..+|.|-||+.|.|.|.-+....
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~Kt 170 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDFKT 170 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhhhhhhhc
Confidence 56678999999999999999999998776654
No 382
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=84.72 E-value=4.9 Score=45.79 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=50.7
Q ss_pred ccCCCCCcEEeeccCCcHHHHHHHhhC--C----EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV--G----MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 597 ~~l~~~~~VLDL~CGtG~i~L~LA~~~--~----~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+++.++.+|||+|+-.|.-++.|.... . .|++=|.++.-+.....-++.....++.+...++.
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDAS 219 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccce
Confidence 577899999999999999997776543 2 89999999999999888877666666666666653
No 383
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=84.43 E-value=1.9 Score=49.12 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=60.8
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCc-eeEEEecC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNK-TLKVANVV 238 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr-~L~V~~A~ 238 (860)
.+++-|+|.++++++++.+|.+.|.....-|- .+.+.++.+.|.+.|+|-.|.-.|+.+...+. -|+|+..+
T Consensus 416 tlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 416 TLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred heeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 57899999999999999999999776444332 45678999999999999999999999998876 78987653
No 384
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=84.35 E-value=2.4 Score=48.34 Aligned_cols=59 Identities=25% Similarity=0.180 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHH
Q 002990 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 580 QvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~ 641 (860)
|--......|++.+.++. +-..|+|+|+|.|.++..|+-+. -.|.|||.+..+.+.|++
T Consensus 135 qhEi~~lselvSsi~~f~---gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFT---GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhc---CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 433344444555566654 44679999999999999998664 699999999887777664
No 385
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=83.94 E-value=8 Score=41.42 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=47.7
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~---~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+.+.+.++.+||-||+.+|+.--.++.-+. .|+|||.++.+.++.-.=|+. -+||--+-+||.
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R~NIiPIl~DAr 132 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--RPNIIPILEDAR 132 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--STTEEEEES-TT
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--CCceeeeeccCC
Confidence 345678899999999999999999998754 999999999998887755554 258888888875
No 386
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=83.59 E-value=14 Score=39.36 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=48.0
Q ss_pred CCCCcEEeeccCCc----HHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEcc-HHHHHHHH
Q 002990 600 GPDTLLFDVCCGTG----TIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAK-AEDVMGSL 665 (860)
Q Consensus 600 ~~~~~VLDL~CGtG----~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gD-ae~~~~~l 665 (860)
..-..+++.+|+.| +++|..|.+ ++++++|-.++......++.+...++.+ ++|+.|+ .+++|..|
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~ 113 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL 113 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc
Confidence 34567899977654 444444443 5799999999999888888888888865 6999998 56666543
No 387
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=82.99 E-value=3.6 Score=38.64 Aligned_cols=67 Identities=10% Similarity=0.195 Sum_probs=48.1
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeEEe------------eccCCcceEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSA------------KKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~i------------k~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L 232 (860)
...|.|-|.|.. ....+-..|+++|-..... ....+..|--|+|+++.+|.+|+.. ||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 446999999988 5667777789996543332 1224568999999999999999987 9999999865
Q ss_pred E
Q 002990 233 K 233 (860)
Q Consensus 233 ~ 233 (860)
-
T Consensus 84 v 84 (100)
T PF05172_consen 84 V 84 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 388
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=82.62 E-value=3.2 Score=43.75 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=46.6
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEINGIKNC 651 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~--~VigVEis~~AIe~Ar~NA~~Ngi~Nv 651 (860)
.+.+.+..++.. .+.+||+|+||||-.+.++|+..- .-.-.|.++......+..+...++.|+
T Consensus 13 pIl~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv 77 (204)
T PF06080_consen 13 PILEVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV 77 (204)
T ss_pred HHHHHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc
Confidence 344445555432 223599999999999999999864 556789999988888888888787764
No 389
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=82.41 E-value=0.6 Score=54.74 Aligned_cols=26 Identities=46% Similarity=1.041 Sum_probs=12.6
Q ss_pred ccccccccccccCCCCCCCCCCCCcCc
Q 002990 81 HKTSLCSYFRKVGTCCHGSTCRYAHGE 107 (860)
Q Consensus 81 ~kt~lc~~~~~~g~c~~g~~C~~ahg~ 107 (860)
|--.-|--|++ |.|..||.|.||||.
T Consensus 234 Ys~tpCPefrk-G~C~rGD~CEyaHgv 259 (528)
T KOG1595|consen 234 YSSTPCPEFRK-GSCERGDSCEYAHGV 259 (528)
T ss_pred ccCccCccccc-CCCCCCCccccccce
Confidence 33444555533 555555555555554
No 390
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=81.92 E-value=1.6 Score=41.52 Aligned_cols=51 Identities=22% Similarity=0.136 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASA 635 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~A 635 (860)
.|.-|+.+-.+.....+....+|||||.|.+.-.|.+-+-.=.|+|.-..-
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~Rk 92 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARRRK 92 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccccccc
Confidence 444444444443333455679999999999999999888777888875433
No 391
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=81.82 E-value=5.3 Score=44.05 Aligned_cols=61 Identities=23% Similarity=0.217 Sum_probs=39.1
Q ss_pred CcEEeeccCCcHHH-HHHHhh---CCEEEEEeCCHHHHHHHHHHHH-HcCC-CcEEEEEccHHHHHH
Q 002990 603 TLLFDVCCGTGTIG-LTLAHR---VGMVIGIEMNASAVSDAHRNAE-INGI-KNCRFVCAKAEDVMG 663 (860)
Q Consensus 603 ~~VLDL~CGtG~i~-L~LA~~---~~~VigVEis~~AIe~Ar~NA~-~Ngi-~Nv~fi~gDae~~~~ 663 (860)
.+|+=||||.=-++ +.|++. ...|++||+++.|++.|++=.. ..|+ ..+.|+++|+.+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~ 188 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY 188 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc
Confidence 58999999965554 666654 2579999999999999988666 4565 469999999876543
No 392
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=81.24 E-value=0.82 Score=53.66 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=29.9
Q ss_pred CcccccccccccccCCCCCCCCCCCCcCccccCCCCCCC
Q 002990 79 PLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNT 117 (860)
Q Consensus 79 ~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr~~p~~~ 117 (860)
..|||.+|+-= |.|+. --|.|||-.+|||..|..+
T Consensus 267 a~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR~l~~s~ 301 (528)
T KOG1595|consen 267 ARYRTRKCKDG---GYCPR-RVCFFAHSPEQLRPLPPST 301 (528)
T ss_pred HHhccccccCC---CCCcc-ceEeeecChHHhcccCCCC
Confidence 56999999865 78998 8999999999999988754
No 393
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=80.98 E-value=2.5 Score=45.19 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=43.5
Q ss_pred CCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
...++|||||.|.+.-.|... ..+++-+|.|..|++.++. ++.+++. +.++.+|-+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~-~~~~v~DEE 129 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIE-TSYFVGDEE 129 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCceE-EEEEecchh
Confidence 457999999999999887655 5899999999999999875 3445653 556666643
No 394
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=80.88 E-value=3.6 Score=48.53 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 179 SDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 179 ~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.+|+++-+.++|-..+.-.-+.+-||.||-|.|.+.|-.|+..|||-=|.||.|++.-.
T Consensus 467 ~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 467 REDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 46777777888443333233455699999999999999999999999999999987644
No 395
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=80.88 E-value=2.6 Score=44.82 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=43.9
Q ss_pred CCCcEEeeccCCcHHHHHH-HhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTL-AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~L-A~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
...+.||.|||+|-++-.| ...+.+|-.||.++..++.|++.....+-.-.++++.-++++.+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~ 119 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE 119 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC
Confidence 4578999999999999754 667899999999999999999765442223478888888777654
No 396
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=80.61 E-value=2.1 Score=50.53 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=48.5
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc----cceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH----GILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~----~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
..+-|+|+|..++..-|.+..++. +..+..+.- +-..|||||.|-+++.+-.+.+++||+.|..
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~ 458 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEK 458 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhh
Confidence 346788899888877776665544 333333322 4567999999999999999999999999964
No 397
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=80.42 E-value=5.5 Score=45.59 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=57.5
Q ss_pred cEEEeCC-CcccCHHHHHHHhhhccceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 167 SKCLVHL-PRKWHSDNLKKFLADHGILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 167 ki~VgnL-P~~~~~~~Lkk~l~~~~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
-+-|-|| +..++.+.|=.+|.-|| .+.+||+ ...+.-|.|.|.+.-+|+-|++.|+|..|=||+|+|...+
T Consensus 299 vllvsnln~~~VT~d~LftlFgvYG-dVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVYG-DVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhhc-ceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 3556666 77889999999999992 3345555 2234789999999999999999999999999999998764
No 398
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=80.11 E-value=5.3 Score=44.29 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=45.5
Q ss_pred EEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCc----HHHHHHHhhC------CEEEEEeCCHHHHHHHHH
Q 002990 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG----TIGLTLAHRV------GMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 572 ~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG----~i~L~LA~~~------~~VigVEis~~AIe~Ar~ 641 (860)
.+..+.||.- ..+.+.|.+.+... ...-+||..||.|| ++++.|.... -+|+|+|+|+.+++.|++
T Consensus 90 tineT~FFRd-~~~f~~L~~~~~~~---~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 90 TTNLTAFFRE-AHHFPILAEHARRR---SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred hCCCCCccCC-cHHHHHHHHHHHhc---CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 3455666653 45556665554321 23469999999999 5666665531 379999999999999986
No 399
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=78.19 E-value=13 Score=39.87 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 581 vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
.|..+-..|.+.+...++.-....|+++|-|.|.|+-.+... +.+...||++...+.-.+.-++... ....++.+|+.
T Consensus 30 QNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~L 108 (326)
T KOG0821|consen 30 QNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVL 108 (326)
T ss_pred HhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEeccccc
Confidence 456667777778888777777789999999999999888755 4688999999998888777666433 36788888864
Q ss_pred HH-HHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccc
Q 002990 660 DV-MGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCT 738 (860)
Q Consensus 660 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 738 (860)
.+ +++.+++-. .-+|.+
T Consensus 109 R~~I~~~~~~~~------------------------~Rpw~d-------------------------------------- 126 (326)
T KOG0821|consen 109 RFKIEKAFSESL------------------------KRPWED-------------------------------------- 126 (326)
T ss_pred eehHHhhcchhh------------------------cCCccc--------------------------------------
Confidence 43 122111100 000111
Q ss_pred cCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCe--EEEEe-cCchhhHHHH-HHhcCCCC
Q 002990 739 SEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQR--LVYIS-CNPETLVANA-IELCTPSP 801 (860)
Q Consensus 739 ~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~r--lVYVS-Cnp~tl~rD~-~~L~~p~~ 801 (860)
...+.-+|=+=|+.=..|-+|+||+..+ .++ .+|.- |-.-|+-..+ ..||.|..
T Consensus 127 --------~~p~~H~IGNLPf~i~~pliik~l~~~s-~r~G~~~ygrt~mTLTFQ~EVAeRlCaP~~ 184 (326)
T KOG0821|consen 127 --------DPPNVHIIGNLPFSVSTPLIIKWLENIS-CRDGPFVYGRTQMTLTFQKEVAERLCAPTG 184 (326)
T ss_pred --------CCCceEEeccCCccccchHHHHHHhhcc-cccCCeeecceeeEEehHHHHHHHhccccc
Confidence 1234678889999999999999999863 333 44442 3334544444 57998864
No 400
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=77.96 E-value=13 Score=40.40 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~ 663 (860)
+..+..++.|..+ +++.. |..|||+=-++-.+.+...++.+.|+.++=....+.|+. +-.++.+.++|--..+.
T Consensus 75 a~l~~yl~~i~~l---N~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~ 148 (279)
T COG2961 75 AELEPYLDAVRQL---NPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALK 148 (279)
T ss_pred HHHHHHHHHHHHh---CCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHh
Confidence 3444444545433 33333 899999999999998888999999999999999988886 55689999999776655
Q ss_pred HH
Q 002990 664 SL 665 (860)
Q Consensus 664 ~l 665 (860)
..
T Consensus 149 a~ 150 (279)
T COG2961 149 AH 150 (279)
T ss_pred hh
Confidence 43
No 401
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=77.87 E-value=0.75 Score=51.01 Aligned_cols=25 Identities=32% Similarity=0.874 Sum_probs=21.7
Q ss_pred ccccccccccCCCCCCCC-CCCCcCcc
Q 002990 83 TSLCSYFRKVGTCCHGST-CRYAHGEE 108 (860)
Q Consensus 83 t~lc~~~~~~g~c~~g~~-C~~ahg~~ 108 (860)
-.+|+-|.| |.|+.|+. |+|||=..
T Consensus 37 ~eVCReF~r-n~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 37 LEVCREFLR-NTCSRGDRECKFAHPPK 62 (331)
T ss_pred HHHHHHHHh-ccccCCCccccccCCCC
Confidence 468999988 88999999 99999544
No 402
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=77.72 E-value=5.8 Score=41.08 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=53.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
++++|.|.+||...+-.|||+-+.+. .|-+..+.+- |.|.|.|-..|+++=|+.+|+...+.-
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccC
Confidence 47899999999999999999999887 5555554442 589999999999999999999988764
No 403
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=77.69 E-value=4.5 Score=47.90 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=30.9
Q ss_pred cceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 202 MTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 202 ~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
-|--||.|.+.|+.++|++.|+|..|.||++.++
T Consensus 454 ~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvts 487 (500)
T KOG0120|consen 454 TGKVFVEFADTEDSQRAMEELTGRKFANRTVVAS 487 (500)
T ss_pred cccEEEEecChHHHHHHHHHccCceeCCcEEEEE
Confidence 3566999999999999999999999999998765
No 404
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=77.19 E-value=0.75 Score=48.37 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=36.9
Q ss_pred CCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~ 641 (860)
...++||||+|.|-|++.++..+.+|+|.|.|..|....++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence 34689999999999999999999999999999999877654
No 405
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=77.14 E-value=8.6 Score=43.58 Aligned_cols=76 Identities=26% Similarity=0.283 Sum_probs=59.1
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCcc-CC-ceeEEEecCCCCc
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI-GN-KTLKVANVVPRSF 242 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~-kG-r~L~V~~A~pk~~ 242 (860)
+=+-|-|--+-++-+-|-+++..+| |.-+.|.+ +..-=|.|.|++.+.|++|-..|||.++ -| .+|+|.-|+|-..
T Consensus 123 Ll~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 123 LLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred EEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 3456777778889999999999883 33333333 3445689999999999999999999994 67 4899999988543
No 406
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=77.09 E-value=4.4 Score=47.57 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=49.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc--cceeEEeec----cCCcceEEEEeCCHHHHHHHHHH
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH--GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEE 221 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~--~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~ 221 (860)
++.-.|+||+||+-++..+|..+|+.. +|.++-|-+ |-.+|-|=|||++...--+||++
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 334569999999999999999999955 777766655 56789999999999999999875
No 407
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=75.97 E-value=6.9 Score=43.00 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=50.0
Q ss_pred EEEcCCCcccCCHHHHHHHHHHHhhhc-cCC--CCCcEEeeccCCc----HHHHHHHhhC-------CEEEEEeCCHHHH
Q 002990 571 FCISPTAFFQVNTLAAEKLYSLGGDWA-DLG--PDTLLFDVCCGTG----TIGLTLAHRV-------GMVIGIEMNASAV 636 (860)
Q Consensus 571 f~isp~sFFQvN~~~ae~L~~~i~~~~-~l~--~~~~VLDL~CGtG----~i~L~LA~~~-------~~VigVEis~~AI 636 (860)
+-+..+.||. ++...+.|-+.+...+ ... ..-+||-++|+|| ++++.|.+.. -+|+|.||+..++
T Consensus 64 ltin~T~FFR-~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L 142 (268)
T COG1352 64 LTINVTEFFR-DPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL 142 (268)
T ss_pred hhhccchhcc-CcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH
Confidence 3445566775 5666777777766532 212 3568999999999 6677766553 3799999999999
Q ss_pred HHHHH
Q 002990 637 SDAHR 641 (860)
Q Consensus 637 e~Ar~ 641 (860)
+.|+.
T Consensus 143 ~~A~~ 147 (268)
T COG1352 143 EKARA 147 (268)
T ss_pred HHHhc
Confidence 99974
No 408
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=75.25 E-value=5.2 Score=46.98 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=46.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeEEee--c---c--CCcc---eEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSAK--K---K--KGMT---VGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik--~---~--r~~g---FgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V 234 (860)
..||+||+||+.++++++.+.|..+|-..+.=. . + ..+| |+|+.|+++-..+ ..|++-......+..
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~---~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQ---SLLSACSEGEGNYYF 335 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHH---HHHHHHhhcccceEE
Confidence 568999999999999999999999944332211 1 1 2345 9999998876554 445555555555444
No 409
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.62 E-value=33 Score=38.80 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=51.7
Q ss_pred HhhhccCCCCCcEEeeccC-CcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH-HHHHHHHhhh
Q 002990 593 GGDWADLGPDTLLFDVCCG-TGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA-EDVMGSLLKD 668 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CG-tG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa-e~~~~~l~~~ 668 (860)
+....+.+.+.+||=+|+| +|..++..|+. +.+|+.+|.++..++.|++ .|.+.+....... -+.+.++++.
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHh
Confidence 4455678899999999988 57777777765 4799999999999999986 6776555554432 3344444443
No 410
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=73.75 E-value=2.5 Score=52.06 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=63.1
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeE----EeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYK----SAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~----~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+++|.|+|+..+.+.|+.++.+.+.... ..+-++.+|-|||-|.++.++.+++-..++..++-+.+.|...+|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 567999999999999999999998843322 222267889999999999999999999999999988888887766
No 411
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=72.74 E-value=37 Score=41.31 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=41.6
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCC--------CcEEEEEccHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGI--------KNCRFVCAKAED 660 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi--------~Nv~fi~gDae~ 660 (860)
+...+.+|| +..|+|.+|..+++. +.+|+++..+...+......+..+++ .++.++.+|+.+
T Consensus 76 ~~~~gKvVL-VTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD 149 (576)
T PLN03209 76 DTKDEDLAF-VAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK 149 (576)
T ss_pred ccCCCCEEE-EECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence 445566666 555678889887654 46899999988877665554433221 358899998865
No 412
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=71.95 E-value=8.8 Score=45.41 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhccC--C--CCCcEEeeccCCcHHHHHHHhhCCEEEEE---eCCHHHHHHHHH
Q 002990 586 AEKLYSLGGDWADL--G--PDTLLFDVCCGTGTIGLTLAHRVGMVIGI---EMNASAVSDAHR 641 (860)
Q Consensus 586 ae~L~~~i~~~~~l--~--~~~~VLDL~CGtG~i~L~LA~~~~~VigV---Eis~~AIe~Ar~ 641 (860)
+..-++.+.+++.+ . .-.++||+|||+|+||.+|..+.-.++.+ |..+..++.|.+
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 33334444444433 2 23479999999999999999875333222 445556666643
No 413
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=71.94 E-value=7.8 Score=43.91 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeecc--CC--cceEEEEeCCHHHHHHHHHHHcCCccCCc
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKK--KG--MTVGFVKFESVEQLKNAVEELEGISIGNK 230 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~--r~--~gFgFVtF~s~Eea~kAIe~LnG~~~kGr 230 (860)
-++.-|-|-.+++++|-++|.+.++...+++.. ++ ..-|.+.|++.++|..|+-+||-+.++|.
T Consensus 408 vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 408 VLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred eeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCC
Confidence 478999999999999999999998888888872 22 24678999999999999999999999875
No 414
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=70.98 E-value=6.7 Score=42.54 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=42.5
Q ss_pred EeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHh
Q 002990 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666 (860)
Q Consensus 606 LDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~ 666 (860)
|..|.|+=.|+..+.+...+.+.+|+.+...+..+.|+.. -.+|.++..|..+.+..++
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~all 120 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALL 120 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhC
Confidence 7899999999999999889999999999999999988764 3589999999998887764
No 415
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=69.50 E-value=23 Score=33.83 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=43.3
Q ss_pred ccEEEeCCCccc-CHHHHHHHhhhc--cceeEEeec-c-CCcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 166 LSKCLVHLPRKW-HSDNLKKFLADH--GILYKSAKK-K-KGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 166 ~ki~VgnLP~~~-~~~~Lkk~l~~~--~v~~~~ik~-~-r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
..+++--.|.++ ..++|..|.+.+ .+...++.+ + .++--+-+.|++++.|+...+.+||+.|.-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 345444444454 456666665555 454445444 2 344567889999999999999999999865
No 416
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.50 E-value=1.7 Score=49.21 Aligned_cols=24 Identities=38% Similarity=1.046 Sum_probs=21.5
Q ss_pred cccccccccCCCCCCCCCCCCcCcc
Q 002990 84 SLCSYFRKVGTCCHGSTCRYAHGEE 108 (860)
Q Consensus 84 ~lc~~~~~~g~c~~g~~C~~ahg~~ 108 (860)
.+|+||.+ |.|.+|+.|||.|..-
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCc
Confidence 79999976 9999999999999754
No 417
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=67.26 E-value=34 Score=42.08 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=30.9
Q ss_pred ccEEEEcC--CCCC---CcHHHHHHHHhccCCCeEEEEecCchhhHHHHH
Q 002990 750 NVVAIVDP--PRGG---LHPTVIKILRTHARLQRLVYISCNPETLVANAI 794 (860)
Q Consensus 750 ~dv~IvDP--PR~G---l~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~ 794 (860)
.|++++|+ |+.- -++.+++.|.++..+...+.=.|-.....|.+.
T Consensus 167 ~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~~vr~~l~ 216 (662)
T PRK01747 167 ADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTSAGFVRRGLQ 216 (662)
T ss_pred ccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeehHHHHHHHHH
Confidence 48999996 6543 368889999887777766665565545555543
No 418
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=64.99 E-value=25 Score=30.28 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=40.9
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc--cceeEEeeccCCcceEEEEeCCHHHHHHHHHHH
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH--GILYKSAKKKKGMTVGFVKFESVEQLKNAVEEL 222 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~--~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~L 222 (860)
-+|+|+|+ ..++.+|++.+|..| +-.+.++.-.-- .-+=|.|.+++.|.+|+..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 36999999 679999999999998 223334443211 22568999999999999865
No 419
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=64.78 E-value=6.1 Score=39.53 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=28.1
Q ss_pred EEEeCCHHHHHHHHHHHHHc---CCCcEEEEEccHHHH
Q 002990 627 IGIEMNASAVSDAHRNAEIN---GIKNCRFVCAKAEDV 661 (860)
Q Consensus 627 igVEis~~AIe~Ar~NA~~N---gi~Nv~fi~gDae~~ 661 (860)
+|||+|+.|++.|+++++.. +..+++|+++|++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l 38 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL 38 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC
Confidence 48999999999998776532 245799999998763
No 420
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=64.52 E-value=12 Score=41.14 Aligned_cols=45 Identities=22% Similarity=0.173 Sum_probs=40.7
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFES 211 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s 211 (860)
.|||+|||+++.-+|||.-|.+.+..+.++.-+...|-+|.-|.+
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~ 376 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGN 376 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCC
Confidence 499999999999999999999998888888877778889999976
No 421
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.99 E-value=15 Score=42.68 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=52.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc--cceeEEeec-c-CCcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH--GILYKSAKK-K-KGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~--~v~~~~ik~-~-r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
..-+||-.+|-+++.-||-.|+..+ -|...++.+ + ..+--..+.|++.++|....+.+||..|.-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 4569999999999999999999977 444444433 1 233456799999999999999999999975
No 422
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=62.66 E-value=5 Score=44.20 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=33.2
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVS 637 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe 637 (860)
..+++|||||||.|..++.+...+ ..|...|.+...++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 457899999999999999998876 78999999888774
No 423
>PRK11524 putative methyltransferase; Provisional
Probab=62.66 E-value=17 Score=39.97 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=28.9
Q ss_pred cEEEEcCCC-CCCc-----------------HHHHHHHHhccCCCeEEEEecCchhhH
Q 002990 751 VVAIVDPPR-GGLH-----------------PTVIKILRTHARLQRLVYISCNPETLV 790 (860)
Q Consensus 751 dv~IvDPPR-~Gl~-----------------~~vi~~lr~~~~~~rlVYVSCnp~tl~ 790 (860)
|+||.|||= .|-+ ..++..+.+..++...+||.|+...+.
T Consensus 29 DlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~ 86 (284)
T PRK11524 29 DLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMP 86 (284)
T ss_pred cEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhh
Confidence 799999992 1111 246666766678899999999987654
No 424
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=62.39 E-value=9.9 Score=41.75 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=40.2
Q ss_pred HHHhhhccCC-CCCcEEeeccCCcHHH--HHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 591 SLGGDWADLG-PDTLLFDVCCGTGTIG--LTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 591 ~~i~~~~~l~-~~~~VLDL~CGtG~i~--L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
..+..++.-. +-..+||||||.=+.+ -.+|+. ..+|+-||+++-.+..++.-+..+.-....++.+|+.+.
T Consensus 57 ~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 57 RRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp HHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred HHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 3344443333 4467999999976433 334443 369999999999999998766554322389999998764
No 425
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=61.39 E-value=12 Score=39.02 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=40.5
Q ss_pred HHHHHHHhhhc--cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHc--CCccCCceeEEEecCC
Q 002990 179 SDNLKKFLADH--GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELE--GISIGNKTLKVANVVP 239 (860)
Q Consensus 179 ~~~Lkk~l~~~--~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~Ln--G~~~kGr~L~V~~A~p 239 (860)
-..|+++|..+ .+.+...+. -+-..|.|.+.+.|.+|...|+ |..+.|..|++-.+++
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 36788888877 334334333 3346899999999999999999 9999999999987743
No 426
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=59.57 E-value=60 Score=29.01 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=29.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 002990 626 VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (860)
Q Consensus 626 VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l 665 (860)
|+-||-++...+..+.-++..|+..+. ...+..+++..+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~-~~~~~~~~~~~~ 39 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVT-TASSGEEALELL 39 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEE-EESSHHHHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEE-EECCHHHHHHHh
Confidence 567899999999999999877774444 566777766554
No 427
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=59.37 E-value=30 Score=30.21 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=41.2
Q ss_pred ccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 002990 176 KWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (860)
Q Consensus 176 ~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~ 233 (860)
..+..+||+-|.++.-.- |..- .-|| ||.|.+-+||++.....||..+-+-.|.
T Consensus 11 ~~~v~d~K~~Lr~y~~~~--I~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR--IRDD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcce--EEec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 356789999999985542 2221 2366 9999999999999999999988776554
No 428
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=58.25 E-value=13 Score=42.21 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=53.0
Q ss_pred CcccCCHHHHHHHHHHHhhhc-cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 002990 577 AFFQVNTLAAEKLYSLGGDWA-DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655 (860)
Q Consensus 577 sFFQvN~~~ae~L~~~i~~~~-~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~ 655 (860)
.|-+.+..........+++.. +...-..++|+|.|+|.++-.+..++.+|-+|+.+..-|-.+..+.. -| |+.+.
T Consensus 152 ~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g---V~~v~ 227 (342)
T KOG3178|consen 152 DFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG---VEHVA 227 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC---cceec
Confidence 333344444444443444332 23334789999999999998888888999999999999988877765 45 45555
Q ss_pred ccH
Q 002990 656 AKA 658 (860)
Q Consensus 656 gDa 658 (860)
||.
T Consensus 228 gdm 230 (342)
T KOG3178|consen 228 GDM 230 (342)
T ss_pred ccc
Confidence 553
No 429
>PLN02540 methylenetetrahydrofolate reductase
Probab=57.88 E-value=25 Score=42.56 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=61.6
Q ss_pred cccCCH-HHHHHHHHHHhhhccCCCCCcEEeeccCCcH----HHHHHHhhC---------CEEEEEeCCHHHHHHHHHHH
Q 002990 578 FFQVNT-LAAEKLYSLGGDWADLGPDTLLFDVCCGTGT----IGLTLAHRV---------GMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 578 FFQvN~-~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~----i~L~LA~~~---------~~VigVEis~~AIe~Ar~NA 643 (860)
||...+ ...+.|+..+..+..+. ...+++--|.|. .++.++... -++++.+.+..+++.+-..+
T Consensus 5 fFPPKt~~g~~nL~~~~~rl~~~~--P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a 82 (565)
T PLN02540 5 FFPPKTEEGVDNLFERMDRMVAHG--PLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETI 82 (565)
T ss_pred EECCCCchHHHHHHHHHHHHhccC--CCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHH
Confidence 455554 44889999888887654 468899888884 344444321 48999999999999999999
Q ss_pred HHcCCCcEEEEEccH
Q 002990 644 EINGIKNCRFVCAKA 658 (860)
Q Consensus 644 ~~Ngi~Nv~fi~gDa 658 (860)
...|+.||-.+.||-
T Consensus 83 ~~~GIrNILALrGDp 97 (565)
T PLN02540 83 KSNGIQNILALRGDP 97 (565)
T ss_pred HHCCCCEEEEECCCC
Confidence 999999999999985
No 430
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=57.42 E-value=12 Score=43.16 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=49.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeecc----------C-------CcceEEEEeCCHHHHHHHHHHHcCCc
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKK----------K-------GMTVGFVKFESVEQLKNAVEELEGIS 226 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~----------r-------~~gFgFVtF~s~Eea~kAIe~LnG~~ 226 (860)
...|.+-|||-+-..+.|.|+|..+ .|..++|-+- . .+-.|||.|.+.+.|.||.+.||...
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 4568899999999999999999998 4444444331 1 24679999999999999999996654
Q ss_pred -cC
Q 002990 227 -IG 228 (860)
Q Consensus 227 -~k 228 (860)
|+
T Consensus 311 ~wr 313 (484)
T KOG1855|consen 311 NWR 313 (484)
T ss_pred hhh
Confidence 53
No 431
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=57.32 E-value=15 Score=43.41 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=46.1
Q ss_pred CCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhh
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~ 667 (860)
+..+|-+|-|.|.++.++-... .++++||++|.|++.|..+.....-....++-.|..+++.++++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k 363 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAK 363 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhh
Confidence 4467778888888887775543 69999999999999999987543322344444555566555543
No 432
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=57.18 E-value=26 Score=28.95 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=35.0
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHH
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAV 219 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAI 219 (860)
.|-|-|.|....+. +.+.|.++|-... +.......+.||+|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~~~-vl~~F~~fGeI~~-~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAEE-VLEHFASFGEIVD-IYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHHH-HHHHHHhcCCEEE-EEcCCCCcEEEEEECCHHHHHhhC
Confidence 47788887666544 4446677844322 222345789999999999999985
No 433
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.00 E-value=3.7 Score=45.15 Aligned_cols=31 Identities=19% Similarity=0.695 Sum_probs=26.7
Q ss_pred cccccccccccccCCCCCCCCCCCCcCcccc
Q 002990 80 LHKTSLCSYFRKVGTCCHGSTCRYAHGEEEL 110 (860)
Q Consensus 80 ~~kt~lc~~~~~~g~c~~g~~C~~ahg~~el 110 (860)
-|-.-+|+-|..+|.|.||+.|.|.|--...
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 3666799999999999999999999976544
No 434
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=56.68 E-value=12 Score=43.09 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=43.5
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHc
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~N 646 (860)
+.+-+.+.+++...|||+|+|.....+|..+ +.-+|+|+....-+.|..|.+.+
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~ 239 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEF 239 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHH
Confidence 3344578889999999999999988877654 67899999888888888777654
No 435
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=56.38 E-value=2 Score=52.80 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccc-eeEEe----eccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGI-LYKSA----KKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v-~~~~i----k~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..+++|.||+..+...+|..+|..+++ .+..+ ..++-+|.|||.|-.++++.+||...++..++...+-++-.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~ 744 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGP 744 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCC
Confidence 457999999999999999999987722 22211 22677899999999999999999999999888666655544
No 436
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=55.73 E-value=25 Score=34.11 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=31.9
Q ss_pred eeccCCc--HHHHHHH-h-h--CCEEEEEeCCHHHHHHHHHH--HHHcCCC-cEEEEE
Q 002990 607 DVCCGTG--TIGLTLA-H-R--VGMVIGIEMNASAVSDAHRN--AEINGIK-NCRFVC 655 (860)
Q Consensus 607 DL~CGtG--~i~L~LA-~-~--~~~VigVEis~~AIe~Ar~N--A~~Ngi~-Nv~fi~ 655 (860)
|+|++.| .....+. + . ..+|+++|.++..++..+.| +..|... .++++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 6655553 2 2 47899999999999999999 7776442 245544
No 437
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=55.34 E-value=28 Score=31.87 Aligned_cols=53 Identities=21% Similarity=0.440 Sum_probs=38.5
Q ss_pred EEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHc
Q 002990 168 KCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELE 223 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~Ln 223 (860)
||--..|+.|...|+-.+|+.+|-..+.=. .-.=|||...+.+++..|+..++
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhc
Confidence 555559999999999999999955433322 23569999999999999999986
No 438
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=54.53 E-value=16 Score=39.82 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=35.6
Q ss_pred CCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi 648 (860)
....||+||+|+|..|+.+|...+-=+...-.+..+...+.|...|++
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~ 133 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNI 133 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhh
Confidence 355799999999999999998654434444566777777777666654
No 439
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=54.52 E-value=7.2 Score=27.13 Aligned_cols=20 Identities=35% Similarity=0.949 Sum_probs=17.6
Q ss_pred ccccccccCCCCCCCCCCCCc
Q 002990 85 LCSYFRKVGTCCHGSTCRYAH 105 (860)
Q Consensus 85 lc~~~~~~g~c~~g~~C~~ah 105 (860)
||.|-..+|.| +-..|.|.|
T Consensus 2 lC~yEl~Gg~C-nd~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVC-NDPDCEFQH 21 (23)
T ss_pred CCccccCCCee-CCCCCCccc
Confidence 79999887799 678899998
No 440
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=53.94 E-value=75 Score=35.33 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=32.7
Q ss_pred cEEeeccCCcHHHHHHHhhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 604 LLFDVCCGTGTIGLTLAHRV-----GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 604 ~VLDL~CGtG~i~L~LA~~~-----~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+|| +-.|+|.+|..|++.. .+|++++.+...+. ...+...++|+.+|+.
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~------~~~~~~~~~~~~~Dl~ 56 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLG------DLVNHPRMHFFEGDIT 56 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH------HhccCCCeEEEeCCCC
Confidence 344 5567899999987642 48999997654321 1223346899999975
No 441
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=53.92 E-value=18 Score=43.79 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
..+-.|+++=..|-=+.++..||||||-.|.-...+++.+ .-|+|||+.|-- -+.||.-+..|+
T Consensus 27 RsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dI 93 (780)
T KOG1098|consen 27 RSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDI 93 (780)
T ss_pred HHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhh
Confidence 3444566555555446778899999999999988888764 689999997632 355666666654
No 442
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=53.52 E-value=33 Score=38.42 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=34.3
Q ss_pred CcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHH----HHcCCCcEEEEEccHHH
Q 002990 603 TLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNA----EINGIKNCRFVCAKAED 660 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA----~~Ngi~Nv~fi~gDae~ 660 (860)
++|| +-.|+|.+|..|++. ..+|+++|............+ ....+.++.|+.+|+.+
T Consensus 16 ~~vl-VtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 16 KRWL-ITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK 80 (348)
T ss_pred CEEE-EECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence 4565 444899999888765 358999997543221111111 11123468899999865
No 443
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=53.22 E-value=69 Score=33.89 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=31.7
Q ss_pred CCcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++||=+| ++|.+|..+++. ...|+++--++....... . .-.+++++.+|+.+
T Consensus 17 ~~~ilItG-asG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~--~~~~~~~~~~Dl~d 73 (251)
T PLN00141 17 TKTVFVAG-ATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL---P--QDPSLQIVRADVTE 73 (251)
T ss_pred CCeEEEEC-CCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc---c--cCCceEEEEeeCCC
Confidence 34565444 577778777643 468888876655432111 1 11368899998765
No 444
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=52.68 E-value=25 Score=38.08 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=52.8
Q ss_pred CeEEEEcCCCcccCCHHHHHHHHHHHhhhccC------CCCCcEEeeccCCcHHHHHHH--hhCCEEEEEeCCHHHHHHH
Q 002990 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADL------GPDTLLFDVCCGTGTIGLTLA--HRVGMVIGIEMNASAVSDA 639 (860)
Q Consensus 568 gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l------~~~~~VLDL~CGtG~i~L~LA--~~~~~VigVEis~~AIe~A 639 (860)
++++.=-|..|.-.-.......+..+.+++.- .++-++||+|.|.-.|=-.+. ..+-+.+|.|+++.+++.|
T Consensus 39 ~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA 118 (292)
T COG3129 39 AVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSA 118 (292)
T ss_pred ceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHH
Confidence 34433335555554433333333444444321 245678999777655432232 2346899999999999999
Q ss_pred HHHHHHc-CCCc-EEEEE
Q 002990 640 HRNAEIN-GIKN-CRFVC 655 (860)
Q Consensus 640 r~NA~~N-gi~N-v~fi~ 655 (860)
+.++..| ++.+ +++..
T Consensus 119 ~~ii~~N~~l~~~I~lr~ 136 (292)
T COG3129 119 KAIISANPGLERAIRLRR 136 (292)
T ss_pred HHHHHcCcchhhheeEEe
Confidence 9999999 6643 55443
No 445
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=51.84 E-value=23 Score=35.54 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=29.3
Q ss_pred ceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 203 TVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 203 gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
+--.|||++-+.|.+|++ |+|..+.|+.|+|+...|-
T Consensus 71 ~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 456899999999998876 6999999999999876553
No 446
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=50.74 E-value=18 Score=37.97 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=40.5
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEc-cHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA-KAEDV 661 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~g-Dae~~ 661 (860)
+.++.+|||+||-.|.-+..+.+++ +.|+|||+-. ...+..+.++++ |+.+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dvtdp 122 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDVTDP 122 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCcccccccccCCH
Confidence 4678999999999999999888876 7999999842 123456778887 66553
No 447
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=48.91 E-value=7.2 Score=41.09 Aligned_cols=23 Identities=35% Similarity=1.048 Sum_probs=21.1
Q ss_pred ccccccccCCCCCCCCCCCCcCc
Q 002990 85 LCSYFRKVGTCCHGSTCRYAHGE 107 (860)
Q Consensus 85 lc~~~~~~g~c~~g~~C~~ahg~ 107 (860)
.|+||.-+|.|..|..|||.|-.
T Consensus 208 ycryynangicgkgaacrfvhep 230 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHEP 230 (377)
T ss_pred EEEEecCCCcccCCceeeeeccc
Confidence 59999999999999999999953
No 448
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=48.89 E-value=2.1e+02 Score=29.67 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=40.5
Q ss_pred CcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 603 TLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++| +-.|+|.+|..+++. +.+|++++.++...+.+...++..+ .++.++.+|+.+
T Consensus 5 ~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 64 (258)
T PRK12429 5 KVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTD 64 (258)
T ss_pred CEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 3454 666789999988865 4689999999888776666555444 368888888653
No 449
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=48.83 E-value=15 Score=42.19 Aligned_cols=96 Identities=20% Similarity=0.139 Sum_probs=61.5
Q ss_pred eEEEEECCeEEEEcCCCcccCCHHHHHHHHH-HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHH
Q 002990 561 RIHDSISNLRFCISPTAFFQVNTLAAEKLYS-LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSD 638 (860)
Q Consensus 561 ~i~E~i~gl~f~isp~sFFQvN~~~ae~L~~-~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~ 638 (860)
.++++.++..|..++.-=+..+... ..... .+.-...+.++..++|++||.|....+++... ..++|++.++.-+..
T Consensus 70 dl~~~~w~~~~h~~~~~e~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~ 148 (364)
T KOG1269|consen 70 DLYERNWGQSFHFGRIPEGNSNEMF-WIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFR 148 (364)
T ss_pred hhhhhhhccchhccCccchhHHHHH-HHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHH
Confidence 4566666777776665222222222 11111 12222356677789999999999999998764 789999999998888
Q ss_pred HHHHHHHcCCCc-EEEEEcc
Q 002990 639 AHRNAEINGIKN-CRFVCAK 657 (860)
Q Consensus 639 Ar~NA~~Ngi~N-v~fi~gD 657 (860)
+..-+...+++| ..|+.+|
T Consensus 149 ~~~~~~~~~l~~k~~~~~~~ 168 (364)
T KOG1269|consen 149 ANELAKKAYLDNKCNFVVAD 168 (364)
T ss_pred HHHHHHHHHhhhhcceehhh
Confidence 877766666643 3334333
No 450
>PLN00016 RNA-binding protein; Provisional
Probab=48.64 E-value=42 Score=38.02 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=35.1
Q ss_pred CcEEee---ccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHH----HHHHcCCCcEEEEEccHHH
Q 002990 603 TLLFDV---CCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHR----NAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 603 ~~VLDL---~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~----NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+||=+ +.|+|.+|..|++. +.+|+++..+......... ......-.+++++.+|+.+
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d 121 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD 121 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH
Confidence 457755 26899999887754 4689999987654221110 0001011247899999877
No 451
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=48.27 E-value=47 Score=35.38 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=51.7
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+.+.++++||=||+-+||..-.++.-+ +.|+|||.++...+..-.-++. -+|+--+.+||..
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~ 135 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARK 135 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCC
Confidence 34567899999999999999999998765 5899999999998887666554 3577778888743
No 452
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=47.72 E-value=32 Score=39.72 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=39.2
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~N 642 (860)
+.+++.++.+||-|.+|-....-+|+...++|++||+|+..+...+--
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHH
Confidence 445778899999998887777777778889999999999988776543
No 453
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=47.28 E-value=47 Score=36.74 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.6
Q ss_pred cEEEEcCCCCCC------------------cHHHHHHHHhccCCCeEEEEecCchh-hHHHHH
Q 002990 751 VVAIVDPPRGGL------------------HPTVIKILRTHARLQRLVYISCNPET-LVANAI 794 (860)
Q Consensus 751 dv~IvDPPR~Gl------------------~~~vi~~lr~~~~~~rlVYVSCnp~t-l~rD~~ 794 (860)
|+|.+|||..++ |..+.+.+..+..-+.|.|+.||-.+ +.+++-
T Consensus 176 dfvY~DPPY~~~s~t~~f~~Y~~~~f~~~~~~~La~~~~~l~~~~~i~~~~sn~~~~~~~~ly 238 (274)
T COG0338 176 DFVYCDPPYLPLSATSNFTAYGGNGFTEDQHLRLAEVLKELEGKRGISVLDSNSDTEETRELY 238 (274)
T ss_pred cEEEeCCCCCccccccccccccCCCCChHHHHHHHHHHHhccccceEEEecCccchHHHHHHH
Confidence 789999998775 33455566666567888899999864 555554
No 454
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=46.76 E-value=14 Score=43.47 Aligned_cols=49 Identities=33% Similarity=0.596 Sum_probs=32.7
Q ss_pred cccccccccCCCCCCCCCCCC--cCcc------ccCCCCCCCCCcch------HHHHHhhhhc
Q 002990 84 SLCSYFRKVGTCCHGSTCRYA--HGEE------ELRIRPDNTWDPTS------ERAKKARKLE 132 (860)
Q Consensus 84 ~lc~~~~~~g~c~~g~~C~~a--hg~~------elr~~p~~~~~~~s------er~k~~~k~e 132 (860)
--|.+|...|.|++|-+|||+ |-.. +.+..|++...|+. +++..+.|.+
T Consensus 115 ~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~~~~~kek~~d~~~~~~t~N~~s~elq~~LrKre 177 (614)
T KOG2333|consen 115 PSCPVFESLGFCPYGFKCRFLGAHLDIEGNNLIQKEKDPDGQFPPTTKNGVSKELQVDLRKRE 177 (614)
T ss_pred CccceeeccccCCccceeehhhcccCccccchhhhhhCcccCCCCccccccCHHHHHHHHHhh
Confidence 357888888888888888885 4333 33446777777754 5666666643
No 455
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=46.41 E-value=33 Score=39.00 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=37.0
Q ss_pred ccCCCCCcEEeeccC-CcHHHHHHHh-hCCEEEEEeCCHHHHHHHHH
Q 002990 597 ADLGPDTLLFDVCCG-TGTIGLTLAH-RVGMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 597 ~~l~~~~~VLDL~CG-tG~i~L~LA~-~~~~VigVEis~~AIe~Ar~ 641 (860)
.++.++++|+=.|+| .|.+++.+|+ ...+|+++|.+++-.+.|++
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 567788887777765 6678888887 56899999999999999875
No 456
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=45.25 E-value=45 Score=39.73 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=39.7
Q ss_pred CCCcEEeeccCCcHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR------VGMVIGIEMNASAVSDAHRNAEINGI 648 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~------~~~VigVEis~~AIe~Ar~NA~~Ngi 648 (860)
++..+.|++||+|.+.+...+. ...++|-|....+...|+.|+..+++
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 4568999999999998765432 14699999999999999999888776
No 457
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=45.15 E-value=42 Score=33.49 Aligned_cols=36 Identities=14% Similarity=0.346 Sum_probs=28.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 625 MVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 625 ~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
+|+|+||.+.||+.+++.++..++. +++++..+=+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~ 37 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN 37 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH
Confidence 6999999999999999999999984 69999876443
No 458
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=43.55 E-value=24 Score=43.86 Aligned_cols=47 Identities=23% Similarity=0.126 Sum_probs=42.0
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~ 645 (860)
...+..+||-++|-|.|.+..++.+..|++||.+|.|.-..+.-+..
T Consensus 88 ~~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlEy 134 (875)
T COG1743 88 PFEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLEY 134 (875)
T ss_pred cccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999998887653
No 459
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=43.51 E-value=10 Score=41.05 Aligned_cols=31 Identities=23% Similarity=0.651 Sum_probs=26.5
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCcCc
Q 002990 76 SLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGE 107 (860)
Q Consensus 76 ~~~~~~kt~lc~~~~~~g~c~~g~~C~~ahg~ 107 (860)
.+-.-|+-..|..|.++ .|++|..|.|-|--
T Consensus 145 ~pvT~~rea~C~~~e~~-~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 145 SPVTDFREAICGQFERT-ECSRGGACNFMHVK 175 (260)
T ss_pred cCcCchhhhhhcccccc-cCCCCCcCcchhhh
Confidence 34567899999999775 89999999999965
No 460
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=43.11 E-value=56 Score=36.08 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=37.8
Q ss_pred CCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcC
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ng 647 (860)
...+||=.|||.|-++..+|.++-.|.|.|.|--|+-.. |.-.|+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~ 100 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNH 100 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcc
Confidence 457899999999999999999999999999999996544 444454
No 461
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=42.62 E-value=20 Score=39.55 Aligned_cols=58 Identities=24% Similarity=0.225 Sum_probs=40.3
Q ss_pred HHHHHHHhhhccceeEEeec-cCC-----cceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 179 SDNLKKFLADHGILYKSAKK-KKG-----MTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 179 ~~~Lkk~l~~~~v~~~~ik~-~r~-----~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
+++.+.-+++||-....+.- ..+ .---||.|...|++-+|+--|||.-|+||.+++..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 44566677777332222111 211 12359999999999999999999999999987653
No 462
>PLN02650 dihydroflavonol-4-reductase
Probab=41.86 E-value=1e+02 Score=34.27 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=35.0
Q ss_pred cEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 604 LLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 604 ~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
+|| +-.|+|.+|..+++. +.+|+++..+.........-....+. .++.++.+|+.+
T Consensus 7 ~iL-VTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d 67 (351)
T PLN02650 7 TVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAV 67 (351)
T ss_pred EEE-EeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCC
Confidence 444 566899999888764 46899888776544332221111222 258899998765
No 463
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=41.66 E-value=52 Score=37.39 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=37.4
Q ss_pred hhccCCCCCcEEeeccCC-cHHHHHHHhhC--CEEEEEeCCHHHHHHHHHH
Q 002990 595 DWADLGPDTLLFDVCCGT-GTIGLTLAHRV--GMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGt-G~i~L~LA~~~--~~VigVEis~~AIe~Ar~N 642 (860)
....+.++.+||.++||. |.+++.+|+.. ..|++++.++...+.++..
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 445567788999998876 77777777764 3699999999998887763
No 464
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=41.01 E-value=42 Score=39.16 Aligned_cols=32 Identities=22% Similarity=0.052 Sum_probs=25.1
Q ss_pred CCCCcEEeeccCC-cHH-HHHHHhhCCEEEEEeC
Q 002990 600 GPDTLLFDVCCGT-GTI-GLTLAHRVGMVIGIEM 631 (860)
Q Consensus 600 ~~~~~VLDL~CGt-G~i-~L~LA~~~~~VigVEi 631 (860)
-.+-+||||+-.. |-+ +..||..+..||=||-
T Consensus 5 L~GirVldls~~~aGP~a~~lLAdlGA~VIKVE~ 38 (416)
T PRK05398 5 LEGIKVLDFTHVQSGPSCTQLLAWFGADVIKVER 38 (416)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcCCCEEEecC
Confidence 3578999998874 554 5667888999999994
No 465
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=40.83 E-value=1.4e+02 Score=29.63 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=34.4
Q ss_pred eccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 608 VCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 608 L~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+..|+|.+|..+++. ..+|+++=-++.-+.. ..+++++.+|+.+.
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---------~~~~~~~~~d~~d~ 51 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---------SPGVEIIQGDLFDP 51 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---------CTTEEEEESCTTCH
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---------ccccccceeeehhh
Confidence 445789999887754 4799999888775554 45899999998665
No 466
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.00 E-value=13 Score=41.72 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=51.1
Q ss_pred cEEEeCCCcccCHHHHH---HHhhhccceeEEeecc-CC-----cc--eEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 167 SKCLVHLPRKWHSDNLK---KFLADHGILYKSAKKK-KG-----MT--VGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lk---k~l~~~~v~~~~ik~~-r~-----~g--FgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
.+||-+||.....+.+- ..|.+||.....++-+ .+ -+ -++|||..+|++..||...+|+...|+.|++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 37788888776555443 3444443332222222 21 11 26999999999999999999999999999988
Q ss_pred ecCCC
Q 002990 236 NVVPR 240 (860)
Q Consensus 236 ~A~pk 240 (860)
...++
T Consensus 159 ~gttk 163 (327)
T KOG2068|consen 159 LGTTK 163 (327)
T ss_pred hCCCc
Confidence 77665
No 467
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=39.98 E-value=36 Score=36.56 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=33.2
Q ss_pred CCcEEeeccCCcHHHHHHHhhC----------CEEEEEeCCHHHHHHHHHHHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRV----------GMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~----------~~VigVEis~~AIe~Ar~NA~~ 645 (860)
.-+|+++|+|.|+++.-+.+.. -+++-||+|+.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3689999999999998776532 3799999999998887777653
No 468
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=39.84 E-value=12 Score=43.94 Aligned_cols=28 Identities=29% Similarity=0.733 Sum_probs=24.5
Q ss_pred ccccccccccc--CCCCCCCCCCCCcCccc
Q 002990 82 KTSLCSYFRKV--GTCCHGSTCRYAHGEEE 109 (860)
Q Consensus 82 kt~lc~~~~~~--g~c~~g~~C~~ahg~~e 109 (860)
+..||....++ ..|++|++|||-|..+-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~a 104 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEA 104 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHH
Confidence 67899999887 58999999999998753
No 469
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=39.38 E-value=45 Score=38.82 Aligned_cols=31 Identities=26% Similarity=0.134 Sum_probs=24.2
Q ss_pred CCCcEEeeccCC-cH-HHHHHHhhCCEEEEEeC
Q 002990 601 PDTLLFDVCCGT-GT-IGLTLAHRVGMVIGIEM 631 (860)
Q Consensus 601 ~~~~VLDL~CGt-G~-i~L~LA~~~~~VigVEi 631 (860)
.|-+|||++-.. |- -+..||..+..||=||-
T Consensus 5 ~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~ 37 (415)
T TIGR03253 5 DGIKVLDFTHVQSGPSCTQMLAWLGADVIKIER 37 (415)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCcEEEeCC
Confidence 577999998754 43 35778888999999995
No 470
>CHL00194 ycf39 Ycf39; Provisional
Probab=39.34 E-value=1.8e+02 Score=32.01 Aligned_cols=46 Identities=20% Similarity=0.077 Sum_probs=31.4
Q ss_pred eccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 608 VCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 608 L~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+..|+|.+|..+++. +.+|+++..+....... .. .+++++.+|+.+
T Consensus 5 VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l----~~---~~v~~v~~Dl~d 54 (317)
T CHL00194 5 VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL----KE---WGAELVYGDLSL 54 (317)
T ss_pred EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH----hh---cCCEEEECCCCC
Confidence 567899999988754 46899998776432111 11 257899998765
No 471
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=39.19 E-value=47 Score=30.65 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=34.3
Q ss_pred ccCCcHHHHHHHhh---C-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 609 CCGTGTIGLTLAHR---V-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 609 ~CGtG~i~L~LA~~---~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
=||.|.+|..+++. . ..|+.||.++..++.++.. | +.++.||+.+.
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~ 52 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATDP 52 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSH
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchhh
Confidence 48999999988764 2 4899999999998887642 3 56899998653
No 472
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.13 E-value=33 Score=38.01 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.9
Q ss_pred EEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 205 GFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 205 gFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
|||||+++.+|+.|.+.+.... ++.++|..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999999766653 456677766
No 473
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=38.99 E-value=27 Score=36.06 Aligned_cols=49 Identities=24% Similarity=0.428 Sum_probs=27.7
Q ss_pred CCcHHHHHHH----hhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHh
Q 002990 611 GTGTIGLTLA----HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666 (860)
Q Consensus 611 GtG~i~L~LA----~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~ 666 (860)
|.|.+|+++| ..+.+|+|+|+++.-++..+ +|.. .|..-.+++++...+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~-----~g~~--p~~E~~l~~ll~~~~ 59 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN-----NGEL--PIYEPGLDELLKENV 59 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH-----TTSS--SS-CTTHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh-----hccc--cccccchhhhhcccc
Confidence 8888887765 45679999999999776654 2432 233444555554443
No 474
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=38.39 E-value=23 Score=40.45 Aligned_cols=62 Identities=13% Similarity=0.291 Sum_probs=48.8
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-----cceeEEeecc---CCcceEEEEeCCHHHHHHHHHHHcCCcc
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-----GILYKSAKKK---KGMTVGFVKFESVEQLKNAVEELEGISI 227 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-----~v~~~~ik~~---r~~gFgFVtF~s~Eea~kAIe~LnG~~~ 227 (860)
.+|.|.+||.+.+..+|-.-+..+ ...+.+...+ .-++++||.|.++++.....+-++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 479999999999999998877765 2333333332 2258999999999999999999999986
No 475
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=36.94 E-value=2.3e+02 Score=32.54 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCCcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHH--HHHHHHHcCCCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSD--AHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~--Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.+||=.| |+|.+|..+++. +.+|+++..+...... ...... ....+++++.+|+.+
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d 122 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTK-KELPGAEVVFGDVTD 122 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHh-hhcCCceEEEeeCCC
Confidence 345677555 899999888753 4689999887654321 001011 112468899998754
No 476
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=36.63 E-value=1.8e+02 Score=31.84 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=28.1
Q ss_pred ccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 609 CCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 609 ~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
-.|+|.+|..+++. ..+|++++............+...+-.++.++.+|+.+
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 61 (338)
T PRK10675 6 TGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61 (338)
T ss_pred ECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCC
Confidence 34689999888764 35899987432111111111111122356778888754
No 477
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=36.54 E-value=2e+02 Score=31.39 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=29.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCchhhHH
Q 002990 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPETLVA 791 (860)
Q Consensus 750 ~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~r 791 (860)
.++||+|=|+ |..+-+..+|... -..|+-|-|++.+.++
T Consensus 118 ~~~iliD~P~-g~~~~~~~al~~a--D~vL~V~~~Da~s~~~ 156 (243)
T PF06564_consen 118 YDWILIDTPP-GPSPYTRQALAAA--DLVLVVVNPDAASHAR 156 (243)
T ss_pred CCEEEEeCCC-CCcHHHHHHHHhC--CeEEEEeCCCHHHHHH
Confidence 4799999998 7788888888753 3677888888877553
No 478
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=36.05 E-value=1.2e+02 Score=32.69 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=54.4
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhh
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDY 669 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~ 669 (860)
.++.+||.+|=|.|.+.-.+-+.- .+=+-||-++..++..+.++=.- -.||.++.|-.++++..|...+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~ 169 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKH 169 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccC
Confidence 578899999999999988776542 33456899999998887765432 2689999999999998876554
No 479
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=35.25 E-value=48 Score=38.56 Aligned_cols=32 Identities=22% Similarity=0.022 Sum_probs=25.2
Q ss_pred CCCCcEEeeccCC-cH-HHHHHHhhCCEEEEEeC
Q 002990 600 GPDTLLFDVCCGT-GT-IGLTLAHRVGMVIGIEM 631 (860)
Q Consensus 600 ~~~~~VLDL~CGt-G~-i~L~LA~~~~~VigVEi 631 (860)
-.|-+|||++... |- .+..||..++.||=||-
T Consensus 12 L~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~ 45 (405)
T PRK03525 12 LAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIEN 45 (405)
T ss_pred CCCCEEEEecchhHHHHHHHHHHHcCCcEEEECC
Confidence 3578999998764 43 45778889999999994
No 480
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=35.19 E-value=73 Score=35.48 Aligned_cols=31 Identities=26% Similarity=0.702 Sum_probs=26.7
Q ss_pred cccccccccccccCCCCCCCCCCCCcCccccC
Q 002990 80 LHKTSLCSYFRKVGTCCHGSTCRYAHGEEELR 111 (860)
Q Consensus 80 ~~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr 111 (860)
.+-.-.|++|.+ |.|+.|..|-|+|+-.=++
T Consensus 101 ~~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~ 131 (285)
T COG5084 101 LSSSVVCKFFLR-GLCKSGFSCEFLHEYDLRS 131 (285)
T ss_pred ccCCcccchhcc-ccCcCCCccccccCCCccc
Confidence 577789999966 9999999999999987555
No 481
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=33.60 E-value=28 Score=42.35 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=58.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
..+.+.++|+|+.....+.=++..|++.|....- +.- -|||-.|...+-...|+..|.-....|.+|-++
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~-kr~---~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSW-KRD---KFGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhh-hhh---hhcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 3446789999999998899999999998765433 111 299999999999999999999999999998765
No 482
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=33.46 E-value=57 Score=34.86 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=18.5
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNA 633 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~ 633 (860)
.+...|.|+|||-+-++..+.. ...|...|+..
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~~~V~SfDLva 103 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-KHKVHSFDLVA 103 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S----EEEEESS-
T ss_pred CCCEEEEECCCchHHHHHhccc-CceEEEeeccC
Confidence 3457899999999999966542 24688888764
No 483
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=33.26 E-value=23 Score=40.04 Aligned_cols=27 Identities=37% Similarity=0.968 Sum_probs=24.1
Q ss_pred cccccccccccCCCCCCCCCCCCcCcc
Q 002990 82 KTSLCSYFRKVGTCCHGSTCRYAHGEE 108 (860)
Q Consensus 82 kt~lc~~~~~~g~c~~g~~C~~ahg~~ 108 (860)
|-.-|.||...|.|..|++|-|-|+.-
T Consensus 104 k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 104 KMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred ccccccccccccccccccCCcccCCCh
Confidence 445699999999999999999999975
No 484
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=32.85 E-value=30 Score=35.55 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=45.6
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~ 655 (860)
.+.+++-+|+|+.+|++.-..|++. ++++++|.-.+|-...+.|.+.|+- -++|..
T Consensus 77 ckhdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnp-lvefhh 134 (286)
T PF05575_consen 77 CKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNNP-LVEFHH 134 (286)
T ss_pred ccCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCCc-ceeeee
Confidence 3567889999999999998888874 7999999999998888888887652 355554
No 485
>PRK11430 putative CoA-transferase; Provisional
Probab=32.19 E-value=64 Score=37.25 Aligned_cols=32 Identities=22% Similarity=0.063 Sum_probs=25.2
Q ss_pred CCCCcEEeeccCC-c-HHHHHHHhhCCEEEEEeC
Q 002990 600 GPDTLLFDVCCGT-G-TIGLTLAHRVGMVIGIEM 631 (860)
Q Consensus 600 ~~~~~VLDL~CGt-G-~i~L~LA~~~~~VigVEi 631 (860)
-.|-+|||++... | .-+..||..+..||=||.
T Consensus 10 L~GirVldls~~~aGP~a~~~LAdlGAeVIKVE~ 43 (381)
T PRK11430 10 FEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEP 43 (381)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHcCCCEEEECC
Confidence 3578999998775 4 345778888999999995
No 486
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.16 E-value=31 Score=35.47 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=43.5
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccC-CcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHc
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCG-TGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CG-tG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~N 646 (860)
+.|.-.++.-...-.+.+||+||.| +|.-|+.+|..+ ..|...|-+..+|+..++-...|
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 3344444443333346789999999 567778888765 78999999999999888766665
No 487
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=31.71 E-value=1e+02 Score=35.37 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=40.8
Q ss_pred HhhhccCCCCCcEEeeccC-CcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 002990 593 GGDWADLGPDTLLFDVCCG-TGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CG-tG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~g 656 (860)
+..-+.+.++.+|.=+||| +|.-++.-|+. +.+|+|||+++.-.+.|++ .|.. .+++.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT--~~vn~ 237 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT--HFVNP 237 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc--eeecc
Confidence 4445567788888888776 45555555554 4799999999999999874 5653 44554
No 488
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=31.56 E-value=4.2e+02 Score=28.91 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=25.5
Q ss_pred CCcHHHHHHH----hhCCEEEEEeCCHHHHHHHHHHHHH
Q 002990 611 GTGTIGLTLA----HRVGMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 611 GtG~i~L~LA----~~~~~VigVEis~~AIe~Ar~NA~~ 645 (860)
|.|.+|..+| ..+..|+.+|.++..++.++..+..
T Consensus 10 GaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~ 48 (291)
T PRK06035 10 GSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIES 48 (291)
T ss_pred CccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Confidence 5565665544 4456899999999999988766554
No 489
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=31.42 E-value=54 Score=41.32 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=59.6
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEecCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN--KTLKVANVVP 239 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG--r~L~V~~A~p 239 (860)
++.+++|+....-..|.+.|..+|.. ..|-...+..|++|.+++..-++.|+..|-|+.++| +.|+|..|.+
T Consensus 457 r~~sgglg~w~p~~~l~r~fd~fGpi-r~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 457 RLQSGGLGPWSPVSRLNREFDRFGPI-RIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred eeccCCCCCCChHHHHHHHhhccCcc-eeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 58899998888888899999988553 223346778999999999999999999999999998 5798887744
No 490
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=31.30 E-value=82 Score=34.56 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-------CEEEEEeCCH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-------GMVIGIEMNA 633 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-------~~VigVEis~ 633 (860)
|+..+.+.--+.++..++|+|||-|.++.+++... ..++.||-..
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 44444444345677899999999999999998754 4788898743
No 491
>PLN02214 cinnamoyl-CoA reductase
Probab=31.25 E-value=5.1e+02 Score=28.89 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=34.8
Q ss_pred CCCcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHH-HHHHHHcCCCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDA-HRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~A-r~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.+||=.| |+|.+|..+++. +.+|+++..+....... ..... .+..++.++.+|+.+
T Consensus 9 ~~~~vlVTG-atGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d 71 (342)
T PLN02214 9 AGKTVCVTG-AGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELE-GGKERLILCKADLQD 71 (342)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhh-CCCCcEEEEecCcCC
Confidence 345666544 589999887754 46899988765532221 11111 122468899998755
No 492
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.12 E-value=1.4e+02 Score=33.43 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=51.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCcee-EEE
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL-KVA 235 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L-~V~ 235 (860)
...|-|-++|..-..= +-.+|+++|-....+.- +...|-.|-|.+.-+|+||+.+ ||+.|.|..+ -|.
T Consensus 197 D~WVTVfGFppg~~s~-vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVk 265 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSI-VLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVK 265 (350)
T ss_pred cceEEEeccCccchhH-HHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeee
Confidence 4579999998776544 44556888665444443 5668999999999999999998 9999999864 344
No 493
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=30.77 E-value=3.9e+02 Score=27.67 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=27.1
Q ss_pred ccEEEEcC---CCCCCcHHHHHHHHhccCCCeEEEEecCchh-hHHHHH
Q 002990 750 NVVAIVDP---PRGGLHPTVIKILRTHARLQRLVYISCNPET-LVANAI 794 (860)
Q Consensus 750 ~dv~IvDP---PR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~t-l~rD~~ 794 (860)
+|++|+|- ...|+ .+++.|+.....-.||.+|..... ...++.
T Consensus 51 pdlvllD~~mp~~~gl--e~~~~l~~~~~~~~iivls~~~~~~~~~~al 97 (225)
T PRK10046 51 PGLILLDNYLPDGRGI--NLLHELVQAHYPGDVVFTTAASDMETVSEAV 97 (225)
T ss_pred CCEEEEeCCCCCCcHH--HHHHHHHhcCCCCCEEEEEcCCCHHHHHHHH
Confidence 47999994 45555 578888764334568888876653 344443
No 494
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=30.37 E-value=6.2e+02 Score=26.08 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=27.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHh
Q 002990 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPETLVANAIEL 796 (860)
Q Consensus 750 ~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L 796 (860)
.|+||+|=|..--+......++. .+.+|.|..--.+..+++..+
T Consensus 149 ~D~IiiD~pp~~~~~~~~~l~~~---aD~viiV~~~~~~~~~~~~~~ 192 (207)
T TIGR03018 149 DRIIIIDTPPLLVFSEARALARL---VGQIVLVVEEGRTTQEAVKEA 192 (207)
T ss_pred CCEEEEECCCCcchhHHHHHHHh---CCEEEEEEECCCCCHHHHHHH
Confidence 38999998866655444444443 477777766665655665544
No 495
>PHA02518 ParA-like protein; Provisional
Probab=30.04 E-value=1.7e+02 Score=29.72 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=17.7
Q ss_pred cCCcHHH------HHHHhhCCEEEEEeCCHHH
Q 002990 610 CGTGTIG------LTLAHRVGMVIGIEMNASA 635 (860)
Q Consensus 610 CGtG~i~------L~LA~~~~~VigVEis~~A 635 (860)
.|+|--+ ..|++.+.+|..||.++..
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3666443 3345667899999998763
No 496
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=29.92 E-value=37 Score=39.38 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=33.4
Q ss_pred CCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHh
Q 002990 611 GTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666 (860)
Q Consensus 611 GtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~ 666 (860)
|-|++||++|-. +.+|+|+||++..++... +| ...+..-+.+.++....
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln-----~G--~~~i~e~~~~~~v~~~v 68 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN-----RG--ESYIEEPDLDEVVKEAV 68 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHh-----CC--cceeecCcHHHHHHHHH
Confidence 889999998754 469999999999997653 23 23344555555554443
No 497
>PF15603 Imm45: Immunity protein 45
Probab=29.79 E-value=89 Score=28.48 Aligned_cols=41 Identities=12% Similarity=0.370 Sum_probs=33.5
Q ss_pred eeecccCCCceeecCCCCC-cCCCHHHHHHHHHHHHHHHhCCCC
Q 002990 393 FMLGNFREGVTAVEEPVDC-PNVSEIACKYASIFQEFLQQSDLP 435 (860)
Q Consensus 393 F~~g~~~~g~~~V~~~~~C-~~v~~~~~~~~~~~~~~l~~s~l~ 435 (860)
|.+ |...+....+|.+| |+-.....+++.++.+++.+.++.
T Consensus 37 Fvv--y~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~~ 78 (82)
T PF15603_consen 37 FVV--YKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGMT 78 (82)
T ss_pred EEE--EccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCceE
Confidence 544 67778888999999 788889999999999988876654
No 498
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=29.75 E-value=3.5e+02 Score=30.14 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=35.7
Q ss_pred CCcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+||=.| |+|.+|..+++. +.+|++++.+............ ...++.++.+|+.+
T Consensus 10 ~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~Dl~~ 69 (353)
T PLN02896 10 TGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK--EGDRLRLFRADLQE 69 (353)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc--cCCeEEEEECCCCC
Confidence 45666554 689999888764 4689998877654333222211 22468899998754
No 499
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=29.57 E-value=39 Score=35.83 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=33.5
Q ss_pred CCcEEeeccCCcHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRV------GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~------~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+|+++|.=-|.-++.+|... ++|+|||++............-. -++|+|+.||..+
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~~i~Gds~d 96 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRITFIQGDSID 96 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceEEEECCCCC
Confidence 4689999999999998887642 79999999544432222211111 1579999998643
No 500
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=29.53 E-value=31 Score=37.76 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=32.1
Q ss_pred CCCCcEEeeccCCcHHH-HHHHhhCCEEEEEeCCHHHHHHHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIG-LTLAHRVGMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~-L~LA~~~~~VigVEis~~AIe~Ar~NA~ 644 (860)
.++.++||+|||.-..- +.++..+.+|+..|..+...+..++=++
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~ 100 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLR 100 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHC
Confidence 35779999999985553 3344567899999999999988876554
Done!