Query 002990
Match_columns 860
No_of_seqs 547 out of 4269
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjq_A Uncharacterized RNA met 100.0 5.8E-59 2E-63 527.5 38.1 339 301-859 86-425 (425)
2 3bt7_A TRNA (uracil-5-)-methyl 100.0 2E-54 6.9E-59 481.3 37.4 362 301-860 3-368 (369)
3 1uwv_A 23S rRNA (uracil-5-)-me 100.0 2.8E-54 9.6E-59 490.0 36.5 345 301-860 86-431 (433)
4 2b78_A Hypothetical protein SM 99.9 1.4E-26 4.8E-31 259.1 22.6 288 366-793 15-340 (385)
5 3c0k_A UPF0064 protein YCCW; P 99.9 2.6E-24 8.9E-29 241.0 26.2 280 374-792 35-347 (396)
6 1wxx_A TT1595, hypothetical pr 99.9 1.3E-24 4.4E-29 242.6 23.0 236 366-665 14-273 (382)
7 2as0_A Hypothetical protein PH 99.9 1.2E-23 3.9E-28 235.7 23.1 240 369-665 18-283 (396)
8 3a27_A TYW2, uncharacterized p 99.8 3E-20 1E-24 198.1 13.7 184 555-859 76-270 (272)
9 2yx1_A Hypothetical protein MJ 99.7 8.5E-17 2.9E-21 176.7 12.8 171 564-860 162-335 (336)
10 1wy7_A Hypothetical protein PH 99.6 2.1E-14 7.1E-19 144.7 16.9 129 578-796 27-162 (207)
11 2frn_A Hypothetical protein PH 99.6 9.7E-15 3.3E-19 155.9 14.2 100 555-660 82-186 (278)
12 4fxv_A ELAV-like protein 1; RN 99.5 1E-14 3.5E-19 132.6 9.6 78 162-239 16-98 (99)
13 3axs_A Probable N(2),N(2)-dime 99.5 2.5E-14 8.5E-19 160.5 14.5 97 567-663 7-119 (392)
14 2igt_A SAM dependent methyltra 99.5 7.7E-14 2.6E-18 153.2 17.2 103 562-665 112-219 (332)
15 3u1l_A PRE-mRNA-splicing facto 99.5 1.5E-14 5.2E-19 152.0 10.9 139 84-243 71-232 (240)
16 2ipx_A RRNA 2'-O-methyltransfe 99.5 1.4E-14 4.7E-19 149.4 10.3 157 581-852 55-226 (233)
17 2dul_A N(2),N(2)-dimethylguano 99.5 1.6E-13 5.6E-18 153.3 16.7 95 567-664 9-127 (378)
18 2h1r_A Dimethyladenosine trans 99.5 1E-14 3.5E-19 157.7 6.4 77 579-659 24-100 (299)
19 3p9n_A Possible methyltransfer 99.5 4.6E-13 1.6E-17 133.5 17.2 96 567-663 11-107 (189)
20 3dxy_A TRNA (guanine-N(7)-)-me 99.5 5.5E-14 1.9E-18 145.1 10.7 147 601-860 34-192 (218)
21 2fpo_A Methylase YHHF; structu 99.5 6.5E-14 2.2E-18 142.1 11.1 121 588-789 40-165 (202)
22 2jvr_A Nucleolar protein 3; RN 99.5 4.6E-14 1.6E-18 131.6 9.0 79 162-240 25-105 (111)
23 3p5t_L Cleavage and polyadenyl 99.5 3.5E-14 1.2E-18 126.1 6.5 76 166-241 2-84 (90)
24 2yxd_A Probable cobalt-precorr 99.5 6.2E-13 2.1E-17 129.7 14.7 92 569-660 1-94 (183)
25 4f25_A Polyadenylate-binding p 99.5 1.5E-13 5.2E-18 127.8 9.6 76 166-241 6-84 (115)
26 1ne2_A Hypothetical protein TA 99.5 3.6E-13 1.2E-17 135.3 12.9 126 577-796 28-158 (200)
27 2lxi_A RNA-binding protein 10; 99.4 1E-13 3.5E-18 123.9 7.1 76 167-242 3-85 (91)
28 2e5j_A Methenyltetrahydrofolat 99.4 3.6E-13 1.2E-17 121.0 10.7 79 162-240 16-94 (97)
29 3md1_A Nuclear and cytoplasmic 99.4 3.4E-13 1.2E-17 116.9 9.8 76 166-241 2-82 (83)
30 3m4x_A NOL1/NOP2/SUN family pr 99.4 5.4E-13 1.8E-17 152.4 14.0 69 594-662 98-169 (456)
31 2ift_A Putative methylase HI07 99.4 1.8E-13 6.3E-18 138.7 9.0 108 601-788 53-167 (201)
32 1dl5_A Protein-L-isoaspartate 99.4 7E-14 2.4E-18 151.7 6.3 163 572-854 48-214 (317)
33 3bs9_A Nucleolysin TIA-1 isofo 99.4 3.1E-13 1.1E-17 118.2 9.2 79 163-241 4-87 (87)
34 1ws6_A Methyltransferase; stru 99.4 1.3E-12 4.4E-17 126.5 14.6 143 567-791 10-154 (171)
35 3s8s_A Histone-lysine N-methyl 99.4 3.6E-13 1.2E-17 124.9 10.1 79 162-240 3-86 (110)
36 3v97_A Ribosomal RNA large sub 99.4 7.1E-13 2.4E-17 159.0 14.5 149 565-797 505-670 (703)
37 1x5s_A Cold-inducible RNA-bind 99.4 9.9E-13 3.4E-17 118.7 11.4 81 162-242 9-94 (102)
38 2cqi_A Nucleolysin TIAR; RNA r 99.4 1.3E-12 4.5E-17 118.3 12.3 81 162-242 12-95 (103)
39 1nv8_A HEMK protein; class I a 99.4 1.3E-12 4.4E-17 140.3 14.3 95 564-660 88-184 (284)
40 2esr_A Methyltransferase; stru 99.4 3.7E-13 1.3E-17 132.2 9.2 153 589-852 18-176 (177)
41 2cq3_A RNA-binding protein 9; 99.4 1.6E-12 5.3E-17 117.8 12.6 81 162-242 12-95 (103)
42 2dnz_A Probable RNA-binding pr 99.4 1.1E-12 3.6E-17 116.9 11.1 80 163-242 3-87 (95)
43 2dgw_A Probable RNA-binding pr 99.4 7.4E-13 2.5E-17 117.3 10.0 78 163-241 8-88 (91)
44 2dgx_A KIAA0430 protein; RRM d 99.4 8.6E-13 2.9E-17 118.6 10.5 79 163-241 7-91 (96)
45 1fbn_A MJ fibrillarin homologu 99.4 5.7E-13 2E-17 137.4 10.5 148 594-857 67-226 (230)
46 2lkz_A RNA-binding protein 5; 99.4 4.3E-13 1.5E-17 121.5 8.2 73 167-239 11-94 (95)
47 1whw_A Hypothetical protein ri 99.4 1.4E-12 4.7E-17 117.2 11.5 81 162-242 5-90 (99)
48 3k6r_A Putative transferase PH 99.4 7.8E-13 2.7E-17 142.0 11.7 100 555-660 82-186 (278)
49 2err_A Ataxin-2-binding protei 99.4 8.2E-13 2.8E-17 121.7 10.1 81 161-241 25-108 (109)
50 2dng_A Eukaryotic translation 99.4 8.5E-13 2.9E-17 119.7 10.1 80 162-242 12-95 (103)
51 2dgo_A Cytotoxic granule-assoc 99.4 1.6E-12 5.4E-17 120.1 12.0 81 162-242 12-97 (115)
52 2fy1_A RNA-binding motif prote 99.4 1.5E-12 5.3E-17 121.4 11.8 81 163-243 5-89 (116)
53 1fjc_A Nucleolin RBD2, protein 99.4 6.3E-13 2.1E-17 118.7 8.7 80 161-241 12-92 (96)
54 2d9p_A Polyadenylate-binding p 99.4 1.6E-12 5.5E-17 117.7 11.3 81 162-242 12-95 (103)
55 1x5t_A Splicing factor 3B subu 99.4 1.1E-12 3.9E-17 116.9 10.0 80 163-242 3-88 (96)
56 2dgv_A HnRNP M, heterogeneous 99.4 1.1E-12 3.6E-17 116.2 9.7 80 162-241 5-87 (92)
57 3ns6_A Eukaryotic translation 99.4 3.5E-13 1.2E-17 122.3 6.7 77 164-240 5-93 (100)
58 1x4a_A Splicing factor, argini 99.4 1.8E-12 6.1E-17 118.8 11.5 79 163-241 20-100 (109)
59 2x1f_A MRNA 3'-END-processing 99.4 1.3E-12 4.4E-17 117.0 10.3 78 165-242 2-84 (96)
60 1fj7_A Nucleolin RBD1, protein 99.4 1.3E-12 4.4E-17 117.9 10.3 79 162-241 14-96 (101)
61 2wbr_A GW182, gawky, LD47780P; 99.4 8.3E-13 2.8E-17 118.1 8.7 72 164-237 6-78 (89)
62 2cpf_A RNA binding motif prote 99.4 1E-12 3.6E-17 117.7 9.5 80 163-242 3-90 (98)
63 2cpz_A CUG triplet repeat RNA- 99.4 1.5E-12 5.2E-17 120.3 10.9 81 162-242 22-107 (115)
64 2jrs_A RNA-binding protein 39; 99.4 1E-12 3.6E-17 121.0 9.7 80 162-241 23-107 (108)
65 2cpe_A RNA-binding protein EWS 99.4 1.4E-12 4.9E-17 120.0 10.6 80 162-241 12-104 (113)
66 2cq0_A Eukaryotic translation 99.4 1.5E-12 5.2E-17 117.9 10.5 80 162-241 12-96 (103)
67 2dnh_A Bruno-like 5, RNA bindi 99.4 2.2E-12 7.4E-17 117.1 11.5 81 162-242 12-99 (105)
68 1x5u_A Splicing factor 3B subu 99.4 1.9E-12 6.6E-17 117.4 11.2 80 162-241 12-96 (105)
69 2cqb_A Peptidyl-prolyl CIS-tra 99.4 1.4E-12 4.7E-17 117.8 10.1 80 162-241 9-93 (102)
70 2do4_A Squamous cell carcinoma 99.4 1.7E-12 5.7E-17 117.0 10.5 79 163-241 15-97 (100)
71 2fc9_A NCL protein; structure 99.4 1.2E-12 4E-17 118.2 9.4 80 162-241 12-92 (101)
72 1wg1_A KIAA1579 protein, homol 99.4 1.1E-12 3.9E-17 115.7 9.2 75 164-240 4-78 (88)
73 2dgs_A DAZ-associated protein 99.4 2.5E-12 8.4E-17 115.7 11.5 80 162-242 7-91 (99)
74 1wi8_A EIF-4B, eukaryotic tran 99.4 1.3E-12 4.4E-17 118.7 9.7 80 162-242 12-96 (104)
75 2fc8_A NCL protein; structure 99.4 1.3E-12 4.5E-17 117.9 9.7 79 162-242 12-94 (102)
76 4a8x_A RNA-binding protein wit 99.4 1.6E-12 5.6E-17 113.7 9.5 76 165-240 4-85 (88)
77 4dmg_A Putative uncharacterize 99.4 3.4E-12 1.2E-16 143.3 14.4 96 562-664 176-276 (393)
78 1p27_B RNA-binding protein 8A; 99.4 1.9E-12 6.4E-17 117.7 10.1 79 163-241 21-104 (106)
79 1sjq_A Polypyrimidine tract-bi 99.4 1.2E-12 4E-17 121.1 8.7 79 162-242 13-94 (105)
80 2cqc_A Arginine/serine-rich sp 99.4 2.5E-12 8.6E-17 114.3 10.6 77 162-238 12-93 (95)
81 3mdf_A Peptidyl-prolyl CIS-tra 99.4 1.8E-12 6.2E-17 112.8 9.5 76 163-238 5-85 (85)
82 2cph_A RNA binding motif prote 99.4 4.4E-12 1.5E-16 115.3 12.3 81 162-242 12-99 (107)
83 1x4h_A RNA-binding protein 28; 99.4 3.7E-12 1.3E-16 116.5 11.9 81 162-242 12-103 (111)
84 1oo0_B CG8781-PA, drosophila Y 99.4 2.2E-12 7.6E-17 118.2 10.2 80 162-241 23-107 (110)
85 3ex7_B RNA-binding protein 8A; 99.4 2E-12 7E-17 121.2 10.1 82 162-243 19-105 (126)
86 2dnm_A SRP46 splicing factor; 99.4 2.3E-12 7.7E-17 116.7 10.1 79 162-240 10-93 (103)
87 2dhg_A TRNA selenocysteine ass 99.4 2.1E-12 7.1E-17 117.0 9.7 81 162-242 6-92 (104)
88 2cpj_A Non-POU domain-containi 99.4 2E-12 7E-17 116.3 9.6 78 162-241 12-90 (99)
89 2cpd_A Apobec-1 stimulating pr 99.4 5E-12 1.7E-16 113.8 12.2 79 162-242 12-91 (99)
90 2dnn_A RNA-binding protein 12; 99.4 1.1E-12 3.6E-17 121.9 7.9 77 165-242 16-95 (109)
91 2e5h_A Zinc finger CCHC-type a 99.4 2.9E-12 1E-16 113.8 10.5 77 162-238 13-94 (94)
92 3m6w_A RRNA methylase; rRNA me 99.3 4E-12 1.4E-16 145.5 14.3 67 595-662 95-164 (464)
93 2la6_A RNA-binding protein FUS 99.3 2.3E-12 7.9E-17 116.0 9.8 76 163-238 11-99 (99)
94 2cpx_A Hypothetical protein FL 99.3 2.9E-12 1E-16 118.1 10.7 80 162-241 22-106 (115)
95 3n9u_C Cleavage and polyadenyl 99.3 9.7E-13 3.3E-17 129.5 7.8 78 163-240 53-137 (156)
96 2dnq_A RNA-binding protein 4B; 99.3 4E-12 1.4E-16 112.4 11.1 76 162-241 5-81 (90)
97 2dgp_A Bruno-like 4, RNA bindi 99.3 3.9E-12 1.3E-16 115.6 11.2 80 162-241 10-97 (106)
98 1x4c_A Splicing factor, argini 99.3 2.4E-12 8.3E-17 118.1 9.8 77 162-241 12-94 (108)
99 1why_A Hypothetical protein ri 99.3 4.2E-12 1.4E-16 113.9 11.0 78 162-241 14-94 (97)
100 3r27_A HnRNP L, heterogeneous 99.3 3.3E-12 1.1E-16 117.0 10.4 79 162-241 18-98 (100)
101 3njr_A Precorrin-6Y methylase; 99.3 5.6E-12 1.9E-16 128.3 13.3 71 590-660 44-115 (204)
102 2dgu_A Heterogeneous nuclear r 99.3 5.9E-12 2E-16 114.2 12.0 78 162-243 8-86 (103)
103 2hvz_A Splicing factor, argini 99.3 3.1E-12 1.1E-16 115.4 10.1 75 167-242 2-77 (101)
104 1yzh_A TRNA (guanine-N(7)-)-me 99.3 1.7E-12 5.9E-17 132.0 9.1 117 601-797 41-169 (214)
105 2la4_A Nuclear and cytoplasmic 99.3 2.2E-12 7.4E-17 116.4 8.7 75 164-240 26-101 (101)
106 2j76_E EIF-4B, EIF4B, eukaryot 99.3 1.1E-12 3.7E-17 118.8 6.7 79 162-241 16-99 (100)
107 2ad9_A Polypyrimidine tract-bi 99.3 4.7E-12 1.6E-16 119.6 11.2 79 162-242 28-109 (119)
108 1x4g_A Nucleolysin TIAR; struc 99.3 4.1E-12 1.4E-16 116.4 10.6 79 163-242 23-101 (109)
109 2cqp_A RNA-binding protein 12; 99.3 2E-12 7E-17 115.8 8.3 79 162-240 12-95 (98)
110 1x4d_A Matrin 3; structural ge 99.3 3.4E-12 1.2E-16 117.3 9.8 78 162-241 12-93 (102)
111 2cpi_A CCR4-NOT transcription 99.3 1.7E-12 5.9E-17 119.8 7.7 79 163-241 13-102 (111)
112 1nu4_A U1A RNA binding domain; 99.3 2.6E-12 8.7E-17 114.8 8.6 80 163-242 6-91 (97)
113 2fhp_A Methylase, putative; al 99.3 3E-12 1E-16 126.0 9.8 96 567-665 12-110 (187)
114 2mss_A Protein (musashi1); RNA 99.3 2.1E-12 7.1E-17 110.1 7.6 70 167-237 1-75 (75)
115 2cqh_A IGF-II mRNA-binding pro 99.3 3.3E-12 1.1E-16 113.5 9.1 76 163-241 6-84 (93)
116 2a3j_A U1 small nuclear ribonu 99.3 3.5E-12 1.2E-16 121.5 9.9 82 162-243 26-113 (127)
117 1p1t_A Cleavage stimulation fa 99.3 2.1E-12 7.2E-17 116.8 7.8 79 164-242 7-90 (104)
118 3lpm_A Putative methyltransfer 99.3 2.7E-11 9.2E-16 127.2 17.3 87 569-661 22-111 (259)
119 1wez_A HnRNP H', FTP-3, hetero 99.3 2.5E-12 8.4E-17 117.5 8.1 78 162-240 12-92 (102)
120 2kxn_B Transformer-2 protein h 99.3 4.5E-12 1.6E-16 120.6 10.1 79 162-240 43-126 (129)
121 2do0_A HnRNP M, heterogeneous 99.3 1.1E-11 3.8E-16 114.0 12.4 79 162-240 12-94 (114)
122 1u6f_A Tcubp1, RNA-binding pro 99.3 6.9E-12 2.4E-16 119.6 11.4 80 162-241 39-123 (139)
123 2yxl_A PH0851 protein, 450AA l 99.3 2.2E-12 7.6E-17 146.9 9.3 65 595-659 253-320 (450)
124 2nlw_A Eukaryotic translation 99.3 4E-12 1.4E-16 116.2 9.2 78 163-240 13-100 (105)
125 2ywk_A Putative RNA-binding pr 99.3 4.3E-12 1.5E-16 112.9 9.2 77 162-238 13-93 (95)
126 2ek1_A RNA-binding protein 12; 99.3 2.4E-12 8.4E-17 114.5 7.5 77 162-238 12-93 (95)
127 2hzc_A Splicing factor U2AF 65 99.3 4E-12 1.4E-16 111.1 8.8 72 163-235 4-85 (87)
128 1jg1_A PIMT;, protein-L-isoasp 99.3 6.7E-13 2.3E-17 137.2 4.4 160 576-853 66-226 (235)
129 1wg5_A Heterogeneous nuclear r 99.3 7.6E-12 2.6E-16 114.1 10.8 80 162-242 12-96 (104)
130 2cqd_A RNA-binding region cont 99.3 6.8E-12 2.3E-16 116.1 10.6 81 162-243 14-99 (116)
131 3tm4_A TRNA (guanine N2-)-meth 99.3 5.7E-12 1.9E-16 140.2 11.8 72 588-660 205-279 (373)
132 3ucg_A Polyadenylate-binding p 99.3 4.4E-12 1.5E-16 111.4 8.6 75 165-240 6-85 (89)
133 2cpy_A RNA-binding protein 12; 99.3 2.5E-12 8.5E-17 119.2 7.4 79 162-241 12-95 (114)
134 2dgt_A RNA-binding protein 30; 99.3 1.3E-11 4.6E-16 109.5 11.8 77 162-242 7-84 (92)
135 2lmi_A GRSF-1, G-rich sequence 99.3 1.6E-12 5.5E-17 119.2 6.0 79 162-241 8-93 (107)
136 3lqv_A PRE-mRNA branch site pr 99.3 4.2E-12 1.5E-16 117.2 8.8 79 163-241 6-86 (115)
137 3egn_A RNA-binding protein 40; 99.3 4.9E-12 1.7E-16 121.5 9.5 79 162-240 42-130 (143)
138 2ytc_A PRE-mRNA-splicing facto 99.3 6.3E-12 2.2E-16 109.5 9.4 76 162-238 9-85 (85)
139 2m2b_A RNA-binding protein 10; 99.3 3.6E-12 1.2E-16 121.0 8.4 78 162-240 20-108 (131)
140 2nxc_A L11 mtase, ribosomal pr 99.3 5.9E-12 2E-16 132.5 10.9 145 567-797 87-231 (254)
141 1whx_A Hypothetical protein ri 99.3 5.8E-12 2E-16 116.6 9.5 78 164-242 9-86 (111)
142 1wex_A Hypothetical protein (r 99.3 1.1E-11 3.9E-16 113.9 11.4 80 162-242 12-93 (104)
143 2dis_A Unnamed protein product 99.3 8.8E-12 3E-16 113.8 10.4 79 164-242 7-94 (109)
144 2dnp_A RNA-binding protein 14; 99.3 1.3E-11 4.6E-16 109.0 11.2 75 162-240 6-81 (90)
145 2hgl_A HNRPF protein, heteroge 99.3 2.1E-12 7.3E-17 124.5 6.5 79 162-241 41-126 (136)
146 2krb_A Eukaryotic translation 99.3 2E-12 6.7E-17 112.3 5.6 70 166-235 2-81 (81)
147 2db1_A Heterogeneous nuclear r 99.3 2.5E-12 8.6E-17 120.3 6.6 78 163-241 15-99 (118)
148 2div_A TRNA selenocysteine ass 99.3 5.3E-12 1.8E-16 113.3 8.5 79 162-240 6-94 (99)
149 2kvi_A Nuclear polyadenylated 99.3 6E-12 2E-16 112.9 8.7 78 162-243 7-86 (96)
150 3ulh_A THO complex subunit 4; 99.3 8E-12 2.7E-16 113.7 9.7 77 162-238 26-106 (107)
151 2cq1_A PTB-like protein L; RRM 99.3 1.5E-11 5.3E-16 112.5 11.6 80 162-242 12-93 (101)
152 2khc_A Testis-specific RNP-typ 99.3 5E-12 1.7E-16 117.2 8.4 76 162-237 37-117 (118)
153 2cq2_A Hypothetical protein LO 99.3 6.9E-12 2.4E-16 117.5 9.4 81 163-244 23-110 (114)
154 1s79_A Lupus LA protein; RRM, 99.3 6.7E-12 2.3E-16 115.1 9.0 75 164-239 10-88 (103)
155 2kt5_A RNA and export factor-b 99.3 1.6E-11 5.6E-16 115.0 11.8 79 162-240 32-114 (124)
156 2rs2_A Musashi-1, RNA-binding 99.3 6.9E-12 2.4E-16 115.6 9.1 81 162-243 22-107 (109)
157 2jvo_A Nucleolar protein 3; nu 99.3 9.2E-12 3.2E-16 114.8 9.8 76 162-241 28-104 (108)
158 1x4f_A Matrin 3; structural ge 99.3 6.6E-12 2.3E-16 117.3 8.8 79 162-242 22-104 (112)
159 3bzb_A Uncharacterized protein 99.3 9.4E-12 3.2E-16 132.9 11.3 74 585-658 63-148 (281)
160 2xnq_A Nuclear polyadenylated 99.3 1.5E-11 5E-16 111.0 10.5 75 162-240 19-95 (97)
161 2hgm_A HNRPF protein, heteroge 99.3 2.6E-12 8.9E-17 122.4 5.7 78 162-240 39-121 (126)
162 2dh8_A DAZ-associated protein 99.3 6E-12 2.1E-16 114.3 7.7 80 162-242 13-97 (105)
163 2kn4_A Immunoglobulin G-bindin 99.3 1.5E-11 5.2E-16 119.6 11.1 79 162-240 67-150 (158)
164 3ll7_A Putative methyltransfer 99.3 7.3E-12 2.5E-16 141.1 10.0 87 573-664 69-158 (410)
165 2ki2_A SS-DNA binding protein 99.3 2.4E-12 8.1E-17 113.6 4.6 74 167-241 3-81 (90)
166 2e44_A Insulin-like growth fac 99.3 1.5E-11 5.3E-16 109.6 9.8 77 164-240 14-92 (96)
167 1dus_A MJ0882; hypothetical pr 99.3 4.4E-11 1.5E-15 117.4 13.9 96 560-659 12-112 (194)
168 2hgn_A Heterogeneous nuclear r 99.3 2.5E-12 8.4E-17 124.6 4.8 79 162-241 43-124 (139)
169 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 1.4E-11 4.6E-16 117.1 9.7 76 162-237 60-140 (140)
170 1x4e_A RNA binding motif, sing 99.3 4E-12 1.4E-16 111.0 5.5 74 163-236 3-81 (85)
171 1x5o_A RNA binding motif, sing 99.3 1.9E-11 6.7E-16 112.6 10.4 78 163-240 23-112 (114)
172 2i2y_A Fusion protein consists 99.3 1.8E-11 6.2E-16 118.4 10.6 78 162-240 70-148 (150)
173 1h2v_Z 20 kDa nuclear CAP bind 99.2 1.7E-11 5.8E-16 119.4 10.4 79 163-241 37-120 (156)
174 3s7r_A Heterogeneous nuclear r 99.2 1.2E-11 4E-16 108.4 8.4 75 162-237 8-87 (87)
175 1wf1_A RNA-binding protein RAL 99.2 1.9E-11 6.5E-16 112.2 10.1 73 164-240 26-100 (110)
176 3dmg_A Probable ribosomal RNA 99.2 1.9E-11 6.4E-16 136.7 11.8 91 569-660 198-291 (381)
177 1sjr_A Polypyrimidine tract-bi 99.2 1.9E-11 6.6E-16 121.4 10.5 82 162-243 43-127 (164)
178 2cq4_A RNA binding motif prote 99.2 4.7E-12 1.6E-16 116.9 5.7 75 165-240 25-104 (114)
179 2lea_A Serine/arginine-rich sp 99.2 1.3E-11 4.6E-16 118.2 9.0 79 163-241 45-128 (135)
180 3ajd_A Putative methyltransfer 99.2 3.3E-11 1.1E-15 128.2 12.9 69 595-663 77-148 (274)
181 1yb2_A Hypothetical protein TA 99.2 1.3E-11 4.3E-16 131.0 9.6 146 566-797 68-224 (275)
182 3beg_B Splicing factor, argini 99.2 1.4E-11 4.7E-16 114.6 8.5 74 164-240 15-94 (115)
183 1wel_A RNA-binding protein 12; 99.2 3.3E-12 1.1E-16 120.0 4.4 78 163-241 23-105 (124)
184 1x4b_A Heterogeneous nuclear r 99.2 1.4E-11 4.8E-16 114.0 8.5 77 165-242 27-108 (116)
185 1x5p_A Negative elongation fac 99.2 3.6E-11 1.2E-15 107.9 10.8 77 162-241 12-88 (97)
186 1uaw_A Mouse-musashi-1; RNP-ty 99.2 8.9E-12 3E-16 106.4 6.4 70 167-237 2-76 (77)
187 2b3t_A Protein methyltransfera 99.2 4.1E-11 1.4E-15 127.0 13.0 93 565-660 76-170 (276)
188 2cqg_A TDP-43, TAR DNA-binding 99.2 4.3E-11 1.5E-15 108.3 10.9 79 162-242 12-95 (103)
189 3q2s_C Cleavage and polyadenyl 99.2 6.9E-12 2.4E-16 130.8 6.4 77 164-240 67-150 (229)
190 1rk8_A CG8781-PA, CG8781-PA pr 99.2 1.9E-11 6.4E-16 120.6 9.1 81 163-243 70-155 (165)
191 2e5i_A Heterogeneous nuclear r 99.2 5.9E-11 2E-15 112.8 12.1 79 163-243 23-105 (124)
192 4dcm_A Ribosomal RNA large sub 99.2 3.3E-11 1.1E-15 134.5 12.0 90 567-659 191-285 (375)
193 2jwn_A Embryonic polyadenylate 99.2 2.1E-11 7.2E-16 114.0 8.8 75 165-240 36-115 (124)
194 2e5g_A U6 snRNA-specific termi 99.2 2.7E-11 9.1E-16 108.1 9.1 77 164-242 7-84 (94)
195 2frx_A Hypothetical protein YE 99.2 4.5E-11 1.5E-15 137.5 13.4 65 597-661 111-180 (479)
196 3e05_A Precorrin-6Y C5,15-meth 99.2 6.4E-11 2.2E-15 119.2 12.9 69 591-659 30-100 (204)
197 2dha_A FLJ20171 protein; RRM d 99.2 5.5E-12 1.9E-16 119.6 4.6 78 164-242 22-107 (123)
198 4df3_A Fibrillarin-like rRNA/T 99.2 7.9E-11 2.7E-15 123.4 13.6 180 557-860 40-233 (233)
199 2lcw_A RNA-binding protein FUS 98.8 1.4E-12 4.9E-17 120.9 0.0 80 163-242 5-97 (116)
200 3zzy_A Polypyrimidine tract-bi 99.2 4.4E-11 1.5E-15 114.6 10.2 81 162-243 25-109 (130)
201 2h00_A Methyltransferase 10 do 99.2 2.3E-11 7.8E-16 126.8 8.9 95 566-660 26-127 (254)
202 1iqt_A AUF1, heterogeneous nuc 99.2 1.4E-11 4.9E-16 104.7 5.8 70 167-237 1-75 (75)
203 3d2w_A TAR DNA-binding protein 99.2 4.4E-11 1.5E-15 106.4 9.2 76 162-242 8-86 (89)
204 2b9e_A NOL1/NOP2/SUN domain fa 99.2 5.5E-11 1.9E-15 129.4 11.4 66 595-660 96-164 (309)
205 4dzr_A Protein-(glutamine-N5) 99.2 5E-11 1.7E-15 119.2 9.9 91 571-664 1-94 (215)
206 3tma_A Methyltransferase; thum 99.2 1.1E-10 3.9E-15 128.2 13.6 72 589-660 191-265 (354)
207 4f02_A Polyadenylate-binding p 99.2 3.5E-11 1.2E-15 123.0 8.6 77 165-241 103-182 (213)
208 2diu_A KIAA0430 protein; struc 99.2 9.4E-11 3.2E-15 106.0 9.9 72 168-243 12-87 (96)
209 1fje_B Nucleolin RBD12, protei 99.2 5.9E-11 2E-15 116.2 9.1 79 162-241 96-175 (175)
210 1ixk_A Methyltransferase; open 99.2 8.5E-11 2.9E-15 127.8 11.0 66 595-660 112-180 (315)
211 3gdh_A Trimethylguanosine synt 99.1 8.4E-11 2.9E-15 121.2 10.1 87 572-661 51-139 (241)
212 3lbf_A Protein-L-isoaspartate 99.1 4.6E-11 1.6E-15 120.4 7.7 70 591-660 67-136 (210)
213 1sqg_A SUN protein, FMU protei 99.1 1.5E-10 5.3E-15 130.9 12.5 66 595-661 240-307 (429)
214 3md3_A Nuclear and cytoplasmic 99.1 1.9E-10 6.4E-15 110.7 10.6 78 162-239 84-166 (166)
215 2f3j_A RNA and export factor b 99.1 1.2E-10 4.1E-15 116.8 9.5 79 162-240 85-167 (177)
216 1fxl_A Paraneoplastic encephal 99.1 1.6E-10 5.4E-15 111.3 9.9 76 165-240 2-82 (167)
217 3evz_A Methyltransferase; NYSG 99.1 2E-10 6.8E-15 117.4 11.2 85 567-658 27-113 (230)
218 1b7f_A Protein (SXL-lethal pro 99.1 1.4E-10 4.8E-15 112.2 9.5 77 164-240 2-83 (168)
219 3grz_A L11 mtase, ribosomal pr 99.1 1.4E-10 4.7E-15 116.7 9.4 90 568-659 28-119 (205)
220 3mti_A RRNA methylase; SAM-dep 99.1 3.3E-10 1.1E-14 111.9 11.9 62 599-660 20-81 (185)
221 2qfj_A FBP-interacting repress 99.1 2E-10 6.7E-15 115.9 10.3 80 164-243 124-208 (216)
222 1l3i_A Precorrin-6Y methyltran 99.1 5.1E-10 1.7E-14 109.6 12.9 75 587-661 19-94 (192)
223 2cjk_A Nuclear polyadenylated 99.1 9.8E-11 3.4E-15 113.4 7.5 75 165-240 87-166 (167)
224 2xs2_A Deleted in azoospermia- 99.1 5.5E-11 1.9E-15 107.4 5.3 76 164-241 8-87 (102)
225 2ozv_A Hypothetical protein AT 99.1 7.1E-10 2.4E-14 117.0 14.6 71 593-663 28-104 (260)
226 2bz2_A Negative elongation fac 99.1 2.6E-10 8.9E-15 107.4 9.9 76 163-242 37-113 (121)
227 2dnl_A Cytoplasmic polyadenyla 99.1 2.1E-10 7.2E-15 106.2 9.1 74 163-238 6-86 (114)
228 1fje_B Nucleolin RBD12, protei 99.1 2E-10 6.8E-15 112.4 9.3 78 162-240 10-91 (175)
229 2yvl_A TRMI protein, hypotheti 99.1 4.2E-10 1.4E-14 115.9 12.1 121 592-797 82-203 (248)
230 4f02_A Polyadenylate-binding p 99.1 2.3E-10 7.8E-15 116.9 10.0 77 164-240 14-95 (213)
231 2fca_A TRNA (guanine-N(7)-)-me 99.1 8.7E-10 3E-14 112.7 14.2 60 601-660 38-99 (213)
232 2g4b_A Splicing factor U2AF 65 99.1 2.1E-10 7.3E-15 111.5 8.7 73 165-238 4-86 (172)
233 3tr6_A O-methyltransferase; ce 99.1 1.3E-09 4.4E-14 111.0 14.8 86 576-665 43-132 (225)
234 3md3_A Nuclear and cytoplasmic 99.1 2.2E-10 7.7E-15 110.1 8.6 74 167-240 2-79 (166)
235 3mb5_A SAM-dependent methyltra 99.1 4.5E-10 1.5E-14 116.7 11.4 68 592-659 84-155 (255)
236 1g8a_A Fibrillarin-like PRE-rR 99.1 6.5E-10 2.2E-14 113.7 12.4 91 557-660 36-133 (227)
237 2r6z_A UPF0341 protein in RSP 99.1 2.8E-10 9.7E-15 120.7 9.7 68 598-665 80-155 (258)
238 3tyt_A Heterogeneous nuclear r 99.1 3.9E-10 1.3E-14 115.4 10.4 75 165-240 4-80 (205)
239 2yh0_A Splicing factor U2AF 65 99.1 3.3E-10 1.1E-14 112.7 9.6 79 163-241 112-195 (198)
240 2yh0_A Splicing factor U2AF 65 99.1 1.9E-10 6.5E-15 114.5 7.7 75 165-240 4-88 (198)
241 2g4b_A Splicing factor U2AF 65 99.0 3E-10 1E-14 110.4 8.3 75 163-237 92-171 (172)
242 1wf0_A TDP-43, TAR DNA-binding 99.0 2.4E-10 8.3E-15 100.5 6.9 74 164-242 4-80 (88)
243 2yxe_A Protein-L-isoaspartate 99.0 2.6E-10 8.9E-15 115.3 8.0 67 592-658 68-137 (215)
244 1l3k_A Heterogeneous nuclear r 99.0 4.5E-10 1.5E-14 111.6 9.4 78 162-240 10-92 (196)
245 3eey_A Putative rRNA methylase 99.0 7.9E-10 2.7E-14 110.2 11.1 63 598-660 19-85 (197)
246 3pgw_S U1-70K; protein-RNA com 99.0 6.9E-10 2.4E-14 126.2 12.0 80 163-242 100-184 (437)
247 3iv6_A Putative Zn-dependent a 99.0 2.7E-11 9.4E-16 128.9 0.1 71 576-646 19-90 (261)
248 3pgw_A U1-A; protein-RNA compl 99.0 6.5E-10 2.2E-14 117.5 10.6 81 162-242 6-92 (282)
249 2qfj_A FBP-interacting repress 99.0 6.8E-10 2.3E-14 112.0 9.9 75 165-239 28-107 (216)
250 1l3k_A Heterogeneous nuclear r 99.0 4.3E-10 1.5E-14 111.7 8.3 79 164-243 103-186 (196)
251 2avd_A Catechol-O-methyltransf 99.0 3.8E-09 1.3E-13 107.7 14.7 86 576-665 48-137 (229)
252 2dit_A HIV TAT specific factor 99.0 1.1E-09 3.8E-14 101.1 9.7 79 164-242 14-104 (112)
253 2adc_A Polypyrimidine tract-bi 99.0 1.1E-09 3.9E-14 113.0 10.7 79 163-242 32-112 (229)
254 1b7f_A Protein (SXL-lethal pro 99.0 1.2E-09 4.2E-14 105.5 10.3 76 162-237 86-168 (168)
255 2adc_A Polypyrimidine tract-bi 99.0 1.2E-09 4E-14 112.9 10.5 78 163-240 149-228 (229)
256 1xdz_A Methyltransferase GIDB; 99.0 5.1E-09 1.8E-13 108.4 14.8 63 599-661 68-132 (240)
257 3duw_A OMT, O-methyltransferas 99.0 9.5E-09 3.2E-13 104.5 16.5 83 579-665 40-126 (223)
258 3nmr_A Cugbp ELAV-like family 99.0 1.3E-09 4.3E-14 106.0 9.5 74 164-237 94-174 (175)
259 3ldu_A Putative methylase; str 99.0 5.8E-10 2E-14 124.8 8.1 79 582-660 176-295 (385)
260 3hm2_A Precorrin-6Y C5,15-meth 99.0 3.7E-09 1.3E-13 102.9 12.6 71 589-660 13-86 (178)
261 3ntv_A MW1564 protein; rossman 99.0 1.9E-09 6.4E-14 111.4 10.9 77 583-663 57-136 (232)
262 1o9g_A RRNA methyltransferase; 99.0 6.9E-10 2.3E-14 115.6 7.6 68 579-646 29-100 (250)
263 1qm9_A Polypyrimidine tract-bi 99.0 1.2E-09 4E-14 109.4 8.9 76 166-242 4-81 (198)
264 1qm9_A Polypyrimidine tract-bi 99.0 1.1E-09 3.7E-14 109.6 8.6 78 163-240 118-197 (198)
265 2pbf_A Protein-L-isoaspartate 99.0 1.6E-09 5.4E-14 110.6 9.9 63 598-660 77-151 (227)
266 1jsx_A Glucose-inhibited divis 99.0 2.3E-09 7.9E-14 107.5 10.9 60 601-660 65-126 (207)
267 3nmr_A Cugbp ELAV-like family 98.9 1.3E-09 4.3E-14 106.0 8.5 74 165-238 3-86 (175)
268 3u81_A Catechol O-methyltransf 98.9 5.5E-09 1.9E-13 106.7 13.6 83 578-664 39-125 (221)
269 2vdv_E TRNA (guanine-N(7)-)-me 98.9 2.2E-09 7.5E-14 111.8 10.8 63 599-661 47-119 (246)
270 3dr5_A Putative O-methyltransf 98.9 4E-09 1.4E-13 108.9 12.5 81 583-664 39-124 (221)
271 2pwy_A TRNA (adenine-N(1)-)-me 98.9 2.5E-09 8.5E-14 110.8 10.9 70 591-660 86-159 (258)
272 3tfw_A Putative O-methyltransf 98.9 4.6E-09 1.6E-13 109.8 12.9 82 579-664 45-130 (248)
273 1fxl_A Paraneoplastic encephal 98.9 2.2E-09 7.6E-14 103.2 9.4 74 164-237 87-167 (167)
274 2voo_A Lupus LA protein; RNA-b 98.9 1.4E-09 4.8E-14 110.4 8.4 73 166-239 110-186 (193)
275 2ghp_A U4/U6 snRNA-associated 98.9 1.2E-09 4.1E-14 116.0 8.2 78 163-241 208-292 (292)
276 3sde_A Paraspeckle component 1 98.9 2.2E-09 7.5E-14 113.1 10.1 77 162-239 19-95 (261)
277 3smz_A Protein raver-1, ribonu 98.9 2.4E-09 8.1E-14 113.3 10.1 72 164-237 21-92 (284)
278 3smz_A Protein raver-1, ribonu 98.9 2.3E-09 7.9E-14 113.4 9.9 80 163-242 182-266 (284)
279 2pe8_A Splicing factor 45; RRM 98.9 2.8E-09 9.7E-14 98.1 9.0 78 164-241 7-95 (105)
280 3k0b_A Predicted N6-adenine-sp 98.9 1.2E-09 4E-14 122.7 7.6 76 585-660 185-301 (393)
281 3pgw_A U1-A; protein-RNA compl 98.9 3.9E-09 1.3E-13 111.5 10.8 76 162-238 204-281 (282)
282 2j8a_A Histone-lysine N-methyl 98.9 1E-09 3.5E-14 104.7 5.6 71 166-236 3-92 (136)
283 1o54_A SAM-dependent O-methylt 98.9 4.3E-09 1.5E-13 111.3 11.0 69 592-660 103-175 (277)
284 3ldg_A Putative uncharacterize 98.9 3.2E-09 1.1E-13 118.9 10.4 75 586-660 179-294 (384)
285 2oyr_A UPF0341 protein YHIQ; a 98.9 8.6E-10 3E-14 117.2 5.2 72 592-663 77-159 (258)
286 2f8l_A Hypothetical protein LM 98.9 4.8E-09 1.7E-13 114.9 11.1 60 598-658 127-193 (344)
287 1i9g_A Hypothetical protein RV 98.9 8.5E-09 2.9E-13 108.5 12.4 70 591-660 89-164 (280)
288 2cjk_A Nuclear polyadenylated 98.9 2.1E-09 7.3E-14 103.9 7.0 75 164-240 2-81 (167)
289 2d9m_A Zinc finger CCCH-type d 98.9 5.1E-10 1.7E-14 94.8 2.1 35 78-113 15-49 (69)
290 1vbf_A 231AA long hypothetical 98.9 2.9E-09 1E-13 108.7 8.0 69 590-660 59-127 (231)
291 2qm3_A Predicted methyltransfe 98.8 6.3E-09 2.2E-13 115.5 10.7 60 600-660 171-232 (373)
292 1sui_A Caffeoyl-COA O-methyltr 98.8 3.1E-08 1.1E-12 103.8 15.3 86 577-666 59-148 (247)
293 3r3h_A O-methyltransferase, SA 98.8 6.5E-09 2.2E-13 108.7 9.3 87 576-666 39-129 (242)
294 3ckk_A TRNA (guanine-N(7)-)-me 98.8 1.8E-08 6E-13 105.1 12.1 64 600-663 45-116 (235)
295 1r18_A Protein-L-isoaspartate( 98.8 3.7E-09 1.3E-13 108.3 6.7 62 599-660 82-156 (227)
296 2gpy_A O-methyltransferase; st 98.8 1.1E-08 3.7E-13 105.1 9.8 80 580-663 37-119 (233)
297 3q87_B N6 adenine specific DNA 98.8 8E-09 2.7E-13 101.7 8.3 64 585-660 9-72 (170)
298 3tyt_A Heterogeneous nuclear r 98.8 7E-09 2.4E-13 106.1 8.0 67 164-230 122-193 (205)
299 1jmt_A Splicing factor U2AF 35 98.8 2.6E-09 8.8E-14 98.1 4.2 68 170-237 20-103 (104)
300 2ghp_A U4/U6 snRNA-associated 98.8 9.7E-09 3.3E-13 109.1 9.3 78 164-241 116-198 (292)
301 3c3y_A Pfomt, O-methyltransfer 98.8 4.5E-08 1.5E-12 101.7 14.0 85 578-666 51-139 (237)
302 3jwg_A HEN1, methyltransferase 98.8 3.8E-08 1.3E-12 99.6 13.1 80 579-658 7-93 (219)
303 3c3p_A Methyltransferase; NP_9 98.8 1.6E-08 5.4E-13 102.2 10.0 62 601-662 56-121 (210)
304 3g89_A Ribosomal RNA small sub 98.8 5E-08 1.7E-12 102.5 13.8 63 599-661 78-142 (249)
305 2hnk_A SAM-dependent O-methylt 98.8 3.4E-08 1.2E-12 102.0 12.1 82 580-665 43-128 (239)
306 1m6y_A S-adenosyl-methyltransf 98.8 1.3E-08 4.6E-13 110.3 9.4 72 589-661 14-87 (301)
307 1zq9_A Probable dimethyladenos 98.8 2.1E-08 7.2E-13 107.5 10.8 69 591-659 18-87 (285)
308 3cbg_A O-methyltransferase; cy 98.7 1E-07 3.5E-12 98.5 14.6 83 579-665 54-140 (232)
309 3hem_A Cyclopropane-fatty-acyl 98.7 8E-08 2.7E-12 102.6 14.0 77 584-660 55-133 (302)
310 3tht_A Alkylated DNA repair pr 98.7 2E-08 6.8E-13 110.8 9.2 76 162-238 15-97 (345)
311 2pjd_A Ribosomal RNA small sub 98.7 3E-08 1E-12 108.7 10.3 88 566-658 164-254 (343)
312 3v97_A Ribosomal RNA large sub 98.7 3.3E-08 1.1E-12 118.6 11.5 76 585-660 174-294 (703)
313 1i1n_A Protein-L-isoaspartate 98.7 2.4E-08 8.3E-13 101.7 8.7 61 599-659 75-143 (226)
314 3m70_A Tellurite resistance pr 98.7 2.2E-08 7.5E-13 105.9 8.3 62 598-660 117-178 (286)
315 3v4m_A Splicing factor U2AF 65 98.7 3.8E-08 1.3E-12 90.4 8.6 74 167-240 7-97 (105)
316 3sde_A Paraspeckle component 1 98.7 3.6E-08 1.2E-12 103.7 9.2 78 164-241 95-180 (261)
317 2ar0_A M.ecoki, type I restric 98.7 4.5E-08 1.5E-12 114.2 10.7 80 575-659 148-252 (541)
318 2b25_A Hypothetical protein; s 98.7 5.8E-08 2E-12 105.7 10.7 68 593-660 97-178 (336)
319 3mq2_A 16S rRNA methyltransfer 98.7 1.3E-08 4.5E-13 103.1 5.1 65 596-660 22-92 (218)
320 3ofk_A Nodulation protein S; N 98.7 3.6E-08 1.2E-12 99.4 8.4 78 581-660 31-108 (216)
321 3r0q_C Probable protein argini 98.7 4.9E-08 1.7E-12 108.6 10.2 75 585-660 47-123 (376)
322 3ftd_A Dimethyladenosine trans 98.6 2.3E-08 7.9E-13 105.4 6.8 68 589-660 19-87 (249)
323 3uwp_A Histone-lysine N-methyl 98.6 1.9E-07 6.6E-12 105.0 14.4 84 574-661 150-244 (438)
324 3kr9_A SAM-dependent methyltra 98.6 6.3E-08 2.1E-12 100.9 9.4 66 592-659 8-76 (225)
325 3gnl_A Uncharacterized protein 98.6 5.9E-08 2E-12 102.3 9.1 67 592-660 14-83 (244)
326 2d9o_A DNAJ (HSP40) homolog, s 98.6 6.8E-08 2.3E-12 88.3 8.3 65 175-242 27-92 (100)
327 3jwh_A HEN1; methyltransferase 98.6 1.3E-07 4.3E-12 95.8 11.0 70 589-658 17-93 (217)
328 1g55_A DNA cytosine methyltran 98.6 5.9E-08 2E-12 106.9 9.1 55 603-662 3-60 (343)
329 4gek_A TRNA (CMO5U34)-methyltr 98.6 7.3E-08 2.5E-12 102.1 9.5 62 599-660 68-134 (261)
330 3gru_A Dimethyladenosine trans 98.6 2.3E-08 8E-13 108.1 5.4 89 570-660 19-107 (295)
331 3ue2_A Poly(U)-binding-splicin 98.6 7E-08 2.4E-12 90.7 8.0 73 167-239 22-108 (118)
332 1inl_A Spermidine synthase; be 98.6 1E-07 3.5E-12 102.7 10.4 62 601-662 90-157 (296)
333 1xj5_A Spermidine synthase 1; 98.6 3.4E-07 1.2E-11 100.6 14.7 64 600-663 119-188 (334)
334 3fpf_A Mtnas, putative unchara 98.6 3.3E-07 1.1E-11 99.2 14.2 73 588-660 109-183 (298)
335 1mjf_A Spermidine synthase; sp 98.6 1.3E-07 4.5E-12 101.0 10.8 63 600-663 74-148 (281)
336 2ex4_A Adrenal gland protein A 98.6 2.5E-07 8.5E-12 95.2 12.6 77 584-660 61-139 (241)
337 3lec_A NADB-rossmann superfami 98.6 8.9E-08 3.1E-12 100.1 9.1 66 593-660 15-83 (230)
338 3vc1_A Geranyl diphosphate 2-C 98.6 8.4E-08 2.9E-12 103.1 8.9 87 573-660 89-178 (312)
339 1qam_A ERMC' methyltransferase 98.6 4E-08 1.4E-12 102.9 5.9 72 587-660 16-87 (244)
340 3htx_A HEN1; HEN1, small RNA m 98.6 2.8E-07 9.5E-12 110.8 13.7 77 584-660 704-789 (950)
341 3q7e_A Protein arginine N-meth 98.6 1.4E-07 4.7E-12 103.9 9.9 69 591-660 56-126 (349)
342 2p7i_A Hypothetical protein; p 98.6 1.6E-07 5.5E-12 95.6 9.7 57 600-660 41-97 (250)
343 2okc_A Type I restriction enzy 98.6 1.2E-07 4.2E-12 107.6 9.7 67 592-658 162-245 (445)
344 1nkv_A Hypothetical protein YJ 98.5 1.8E-07 6.3E-12 96.5 9.9 71 590-660 25-97 (256)
345 2o07_A Spermidine synthase; st 98.5 2.3E-07 7.9E-12 100.5 10.8 64 600-663 94-163 (304)
346 1vl5_A Unknown conserved prote 98.5 1.9E-07 6.5E-12 97.1 9.7 68 593-660 29-96 (260)
347 1u2z_A Histone-lysine N-methyl 98.5 4.7E-07 1.6E-11 102.8 13.5 80 575-658 220-310 (433)
348 3s6e_A RNA-binding protein 39; 98.5 1.3E-07 4.3E-12 88.5 7.3 64 179-242 31-95 (114)
349 1iy9_A Spermidine synthase; ro 98.5 2.5E-07 8.7E-12 98.6 10.6 63 601-663 75-143 (275)
350 2xvm_A Tellurite resistance pr 98.5 2.4E-07 8.3E-12 91.5 9.7 67 594-660 25-91 (199)
351 3tqs_A Ribosomal RNA small sub 98.5 5.5E-08 1.9E-12 103.0 5.1 75 581-661 13-87 (255)
352 3fut_A Dimethyladenosine trans 98.5 9.1E-08 3.1E-12 102.3 6.8 72 581-660 31-102 (271)
353 1y8c_A S-adenosylmethionine-de 98.5 1.3E-07 4.5E-12 96.4 7.2 59 601-660 37-95 (246)
354 1kpg_A CFA synthase;, cyclopro 98.5 8.2E-07 2.8E-11 93.6 13.6 75 585-659 48-124 (287)
355 3id6_C Fibrillarin-like rRNA/T 98.5 3.3E-07 1.1E-11 95.8 10.2 63 595-659 70-135 (232)
356 3dtn_A Putative methyltransfer 98.5 1.9E-07 6.5E-12 95.3 8.2 70 589-660 31-103 (234)
357 1nt2_A Fibrillarin-like PRE-rR 98.5 1.7E-07 5.8E-12 95.8 7.8 61 597-659 53-115 (210)
358 1m9o_A Tristetraproline; Cys3H 98.5 5.7E-08 1.9E-12 84.2 3.5 40 75-114 4-43 (77)
359 2pt6_A Spermidine synthase; tr 98.5 3.4E-07 1.2E-11 99.9 10.4 64 600-663 115-184 (321)
360 3fzg_A 16S rRNA methylase; met 98.5 2.4E-07 8.4E-12 94.2 8.5 66 586-653 36-104 (200)
361 1xxl_A YCGJ protein; structura 98.5 3.1E-07 1.1E-11 94.6 9.4 68 593-660 13-80 (239)
362 3f4k_A Putative methyltransfer 98.5 3.6E-07 1.2E-11 94.3 9.9 68 593-660 37-107 (257)
363 2y1w_A Histone-arginine methyl 98.5 3.8E-07 1.3E-11 100.2 10.6 72 588-660 37-110 (348)
364 4fzv_A Putative methyltransfer 98.5 4.8E-07 1.6E-11 100.4 11.4 67 595-661 142-216 (359)
365 4htf_A S-adenosylmethionine-de 98.5 4.8E-07 1.6E-11 95.5 10.9 59 602-660 69-128 (285)
366 1uir_A Polyamine aminopropyltr 98.5 5.1E-07 1.7E-11 98.1 11.2 64 600-663 76-146 (314)
367 3h2b_A SAM-dependent methyltra 98.4 3.1E-07 1.1E-11 91.6 8.4 54 602-660 42-95 (203)
368 1g6q_1 HnRNP arginine N-methyl 98.4 3.4E-07 1.2E-11 99.8 9.3 71 589-660 26-98 (328)
369 3dh0_A SAM dependent methyltra 98.4 2.8E-07 9.7E-12 92.9 7.8 68 593-660 29-99 (219)
370 1ve3_A Hypothetical protein PH 98.4 3.9E-07 1.3E-11 92.0 8.8 74 584-660 23-96 (227)
371 1pjz_A Thiopurine S-methyltran 98.4 1.3E-07 4.4E-12 95.7 5.2 63 598-660 19-93 (203)
372 3uzu_A Ribosomal RNA small sub 98.4 1.4E-07 4.7E-12 101.2 5.5 74 580-661 25-102 (279)
373 3adn_A Spermidine synthase; am 98.4 2E-07 6.8E-12 100.6 6.6 62 600-661 82-150 (294)
374 3bwc_A Spermidine synthase; SA 98.4 9.1E-07 3.1E-11 95.6 11.8 63 600-662 94-162 (304)
375 1wzn_A SAM-dependent methyltra 98.4 8.3E-07 2.8E-11 91.5 10.7 66 594-660 34-99 (252)
376 3hnr_A Probable methyltransfer 98.4 3.6E-07 1.2E-11 92.1 7.7 58 598-659 42-99 (220)
377 1xtp_A LMAJ004091AAA; SGPP, st 98.4 1.8E-06 6.1E-11 88.9 13.1 66 593-660 85-151 (254)
378 2i7c_A Spermidine synthase; tr 98.4 1.3E-06 4.4E-11 93.4 12.4 64 600-663 77-146 (283)
379 3kkz_A Uncharacterized protein 98.4 6.8E-07 2.3E-11 93.4 9.8 68 593-660 37-107 (267)
380 3bus_A REBM, methyltransferase 98.4 8.5E-07 2.9E-11 92.5 10.6 78 583-660 43-122 (273)
381 2b2c_A Spermidine synthase; be 98.4 5E-07 1.7E-11 98.4 9.0 64 600-663 107-176 (314)
382 2ih2_A Modification methylase 98.4 6.2E-07 2.1E-11 99.9 9.9 65 582-659 24-91 (421)
383 3cgg_A SAM-dependent methyltra 98.4 6E-07 2.1E-11 87.8 8.7 56 599-659 44-99 (195)
384 3mgg_A Methyltransferase; NYSG 98.4 6.5E-07 2.2E-11 93.7 9.3 75 586-660 22-98 (276)
385 1zx0_A Guanidinoacetate N-meth 98.4 6E-07 2E-11 92.3 8.9 63 599-662 58-121 (236)
386 3orh_A Guanidinoacetate N-meth 98.4 1E-06 3.5E-11 91.3 10.6 63 600-663 59-122 (236)
387 2fyt_A Protein arginine N-meth 98.4 7.5E-07 2.6E-11 97.7 10.0 71 589-660 52-124 (340)
388 1qyr_A KSGA, high level kasuga 98.4 4.5E-07 1.5E-11 95.8 8.0 66 591-660 11-78 (252)
389 4hc4_A Protein arginine N-meth 98.4 3.5E-07 1.2E-11 102.1 7.4 63 598-661 80-144 (376)
390 4azs_A Methyltransferase WBDD; 98.4 5.5E-07 1.9E-11 105.4 9.3 65 600-664 65-129 (569)
391 3ggd_A SAM-dependent methyltra 98.4 2.9E-06 9.8E-11 87.2 13.6 60 599-661 54-113 (245)
392 3dlc_A Putative S-adenosyl-L-m 98.4 6.3E-07 2.2E-11 89.5 8.4 72 588-660 31-104 (219)
393 3e8s_A Putative SAM dependent 98.3 5.7E-06 2E-10 82.9 14.6 62 594-661 45-106 (227)
394 2fk8_A Methoxy mycolic acid sy 98.3 1.6E-06 5.4E-11 93.1 10.8 76 585-660 74-151 (318)
395 2gb4_A Thiopurine S-methyltran 98.3 5.4E-07 1.8E-11 95.0 7.0 62 599-660 66-144 (252)
396 3lcc_A Putative methyl chlorid 98.3 6.5E-07 2.2E-11 91.6 7.3 59 602-660 67-126 (235)
397 2o57_A Putative sarcosine dime 98.3 1.6E-06 5.5E-11 91.9 10.3 77 584-660 61-143 (297)
398 2pxx_A Uncharacterized protein 98.3 7.5E-07 2.6E-11 88.8 7.3 67 589-659 32-99 (215)
399 3b3j_A Histone-arginine methyl 98.3 1.3E-06 4.4E-11 100.5 9.9 75 585-660 142-218 (480)
400 3g5t_A Trans-aconitate 3-methy 98.3 1.5E-06 5E-11 92.6 9.4 72 588-660 24-100 (299)
401 1ej0_A FTSJ; methyltransferase 98.3 2.3E-06 7.7E-11 81.9 9.7 62 589-661 10-74 (180)
402 2yqz_A Hypothetical protein TT 98.3 1.3E-06 4.5E-11 90.1 8.7 77 583-660 20-97 (263)
403 3dli_A Methyltransferase; PSI- 98.3 3.3E-06 1.1E-10 86.8 11.2 66 589-662 28-94 (240)
404 3gjy_A Spermidine synthase; AP 98.3 1.6E-06 5.3E-11 94.8 9.1 61 603-663 91-153 (317)
405 3ocj_A Putative exported prote 98.3 6.2E-07 2.1E-11 96.0 5.9 63 598-660 115-181 (305)
406 3g7u_A Cytosine-specific methy 98.3 1.1E-06 3.8E-11 98.0 8.2 114 603-796 3-138 (376)
407 3ujc_A Phosphoethanolamine N-m 98.3 1.1E-06 3.6E-11 90.8 7.2 69 590-660 44-113 (266)
408 2qfm_A Spermine synthase; sper 98.2 2.6E-06 9E-11 94.4 10.5 65 601-665 188-261 (364)
409 3g5l_A Putative S-adenosylmeth 98.2 2.5E-06 8.4E-11 88.2 9.6 72 586-660 29-101 (253)
410 3g2m_A PCZA361.24; SAM-depende 98.2 1.3E-06 4.6E-11 92.9 7.6 66 594-660 76-144 (299)
411 3dou_A Ribosomal RNA large sub 98.2 8.5E-06 2.9E-10 82.0 12.3 66 584-660 8-73 (191)
412 3ou2_A SAM-dependent methyltra 98.2 2.2E-06 7.7E-11 85.7 7.7 58 599-660 44-101 (218)
413 3sm3_A SAM-dependent methyltra 98.2 7.3E-07 2.5E-11 90.2 4.2 60 600-659 29-93 (235)
414 3p2e_A 16S rRNA methylase; met 98.2 4.9E-07 1.7E-11 93.4 2.8 61 600-660 23-89 (225)
415 3gu3_A Methyltransferase; alph 98.2 3.1E-06 1.1E-10 89.6 8.8 63 597-660 18-83 (284)
416 3bkx_A SAM-dependent methyltra 98.2 2E-06 6.9E-11 89.8 7.2 68 590-657 32-109 (275)
417 2kw5_A SLR1183 protein; struct 98.2 2.5E-06 8.4E-11 85.0 7.3 59 600-660 29-87 (202)
418 3thr_A Glycine N-methyltransfe 98.2 3E-06 1E-10 89.5 8.3 74 589-662 45-122 (293)
419 3d2l_A SAM-dependent methyltra 98.2 4.8E-06 1.6E-10 84.9 9.4 68 589-660 23-90 (243)
420 1owx_A Lupus LA protein, SS-B, 98.1 6.1E-06 2.1E-10 78.0 9.0 74 162-237 15-93 (121)
421 2dnr_A Synaptojanin-1; RRM dom 98.1 3.9E-06 1.3E-10 75.3 7.3 71 165-240 7-86 (91)
422 3g07_A 7SK snRNA methylphospha 98.1 2.3E-06 7.8E-11 91.5 6.7 47 601-647 46-94 (292)
423 2bm8_A Cephalosporin hydroxyla 98.1 1.6E-06 5.3E-11 90.2 4.9 55 601-660 81-141 (236)
424 1yub_A Ermam, rRNA methyltrans 98.1 5E-08 1.7E-12 101.7 -6.6 69 590-660 18-86 (245)
425 3m33_A Uncharacterized protein 98.1 4.6E-06 1.6E-10 85.2 8.1 55 600-659 47-101 (226)
426 1ri5_A MRNA capping enzyme; me 98.1 6.2E-06 2.1E-10 86.7 8.8 62 599-660 62-125 (298)
427 3ege_A Putative methyltransfer 98.1 1.5E-06 5.3E-11 90.8 4.1 66 589-660 22-87 (261)
428 4hg2_A Methyltransferase type 98.1 1.7E-06 6E-11 91.4 4.3 65 588-660 28-92 (257)
429 2nyu_A Putative ribosomal RNA 98.1 2.6E-05 8.8E-10 77.0 12.3 65 585-660 6-82 (196)
430 2p35_A Trans-aconitate 2-methy 98.0 6.1E-06 2.1E-10 85.1 7.8 64 592-660 24-89 (259)
431 2vdw_A Vaccinia virus capping 98.0 1.6E-05 5.3E-10 85.9 11.2 58 601-658 48-112 (302)
432 3pfg_A N-methyltransferase; N, 98.0 6E-06 2E-10 85.9 7.6 69 585-660 36-104 (263)
433 3bkw_A MLL3908 protein, S-aden 98.0 6.6E-06 2.2E-10 83.8 7.0 65 593-660 35-100 (243)
434 3bgv_A MRNA CAP guanine-N7 met 98.0 8.9E-06 3E-10 87.2 8.2 74 587-660 18-101 (313)
435 2zig_A TTHA0409, putative modi 98.0 1.3E-05 4.3E-10 86.3 9.3 69 589-658 224-292 (297)
436 3frh_A 16S rRNA methylase; met 98.0 1.4E-05 4.8E-10 84.1 9.4 67 587-658 94-160 (253)
437 3l8d_A Methyltransferase; stru 98.0 9.1E-06 3.1E-10 82.9 7.7 67 589-660 43-109 (242)
438 3i9f_A Putative type 11 methyl 98.0 3.7E-06 1.3E-10 81.3 4.4 58 595-657 11-68 (170)
439 3bxo_A N,N-dimethyltransferase 98.0 1E-05 3.5E-10 82.2 7.8 68 586-660 27-94 (239)
440 2p8j_A S-adenosylmethionine-de 98.0 8.8E-06 3E-10 81.1 7.1 61 599-660 21-82 (209)
441 3lkd_A Type I restriction-modi 98.0 7.8E-06 2.7E-10 95.4 7.6 82 576-658 197-285 (542)
442 3ccf_A Cyclopropane-fatty-acyl 98.0 6.4E-06 2.2E-10 86.6 6.3 63 593-660 49-111 (279)
443 3lcv_B Sisomicin-gentamicin re 97.9 8.7E-06 3E-10 86.5 6.5 70 586-658 119-190 (281)
444 3e23_A Uncharacterized protein 97.9 1E-05 3.6E-10 81.1 6.1 56 599-660 41-96 (211)
445 2oo3_A Protein involved in cat 97.9 7.8E-06 2.7E-10 87.6 5.3 73 588-666 82-154 (283)
446 4fsd_A Arsenic methyltransfera 97.9 1.6E-05 5.4E-10 88.3 7.2 62 599-660 81-153 (383)
447 1qzz_A RDMB, aclacinomycin-10- 97.8 1.5E-05 5.2E-10 87.3 6.6 66 593-659 174-242 (374)
448 3dxb_A Thioredoxin N-terminall 97.8 2.5E-05 8.4E-10 80.0 7.5 61 178-238 142-211 (222)
449 2gs9_A Hypothetical protein TT 97.8 2.1E-05 7.2E-10 78.7 6.9 75 577-660 12-88 (211)
450 3s1s_A Restriction endonucleas 97.8 0.0001 3.5E-09 88.8 13.6 69 579-647 297-374 (878)
451 1g60_A Adenine-specific methyl 97.8 2.6E-05 8.7E-10 82.3 7.6 49 600-648 211-259 (260)
452 1x19_A CRTF-related protein; m 97.8 3.2E-05 1.1E-09 84.7 8.6 68 592-660 181-251 (359)
453 1ufw_A Synaptojanin 2; RNP dom 97.8 2.7E-05 9.4E-10 70.2 6.4 70 163-237 13-92 (95)
454 2r3s_A Uncharacterized protein 97.8 2.4E-05 8.1E-10 84.3 6.8 60 600-660 164-226 (335)
455 2avn_A Ubiquinone/menaquinone 97.8 4.9E-05 1.7E-09 79.2 8.6 66 587-660 42-107 (260)
456 2a14_A Indolethylamine N-methy 97.7 1.4E-05 4.6E-10 83.9 3.9 49 598-646 52-101 (263)
457 2cmg_A Spermidine synthase; tr 97.7 2.8E-05 9.7E-10 82.4 5.4 60 601-660 72-135 (262)
458 1tw3_A COMT, carminomycin 4-O- 97.7 7.7E-05 2.6E-09 81.4 8.8 65 594-659 176-243 (360)
459 1m9o_A Tristetraproline; Cys3H 97.7 6.3E-06 2.1E-10 71.3 0.0 33 77-109 44-76 (77)
460 1wg8_A Predicted S-adenosylmet 97.6 0.0001 3.6E-09 78.9 9.0 69 589-661 10-78 (285)
461 3mcz_A O-methyltransferase; ad 97.6 9.8E-05 3.3E-09 80.3 9.1 66 593-659 170-239 (352)
462 3gwz_A MMCR; methyltransferase 97.6 0.00011 3.7E-09 81.1 9.5 68 591-659 192-262 (369)
463 2plw_A Ribosomal RNA methyltra 97.6 3.5E-05 1.2E-09 76.5 4.8 64 586-660 7-74 (201)
464 3khk_A Type I restriction-modi 97.6 2E-05 6.9E-10 92.0 3.4 76 576-657 225-318 (544)
465 2i62_A Nicotinamide N-methyltr 97.6 2E-05 6.8E-10 81.4 3.0 50 598-647 53-103 (265)
466 3opn_A Putative hemolysin; str 97.6 2.7E-05 9.3E-10 81.0 4.0 44 600-643 36-80 (232)
467 2qe6_A Uncharacterized protein 97.6 0.00013 4.5E-09 77.5 9.3 59 601-661 77-140 (274)
468 1p91_A Ribosomal RNA large sub 97.6 0.0001 3.4E-09 76.8 7.9 69 586-660 71-141 (269)
469 3i53_A O-methyltransferase; CO 97.5 0.0001 3.4E-09 79.7 7.1 62 597-659 165-229 (332)
470 3cc8_A Putative methyltransfer 97.5 4.6E-05 1.6E-09 76.5 4.1 59 593-659 25-83 (230)
471 1vlm_A SAM-dependent methyltra 97.5 8E-05 2.7E-09 75.4 5.6 69 577-659 26-94 (219)
472 2qy6_A UPF0209 protein YFCK; s 97.5 0.00043 1.5E-08 73.3 11.2 65 601-665 60-166 (257)
473 2ip2_A Probable phenazine-spec 97.4 0.00011 3.7E-09 79.4 5.4 67 592-660 159-228 (334)
474 3ufb_A Type I restriction-modi 97.4 0.00018 6.3E-09 83.6 7.4 78 576-658 197-289 (530)
475 2aot_A HMT, histamine N-methyl 97.3 0.00029 9.8E-09 74.8 7.7 63 600-662 51-124 (292)
476 3dp7_A SAM-dependent methyltra 97.3 0.00026 8.9E-09 77.9 7.6 59 600-659 178-239 (363)
477 2k4m_A TR8_protein, UPF0146 pr 97.3 0.00033 1.1E-08 68.2 7.0 52 584-637 20-73 (153)
478 2g72_A Phenylethanolamine N-me 97.3 0.00017 5.9E-09 76.2 5.5 45 601-645 71-116 (289)
479 4e2x_A TCAB9; kijanose, tetron 97.3 0.00025 8.5E-09 79.1 7.0 58 585-642 91-148 (416)
480 2wa2_A Non-structural protein 97.3 4.2E-05 1.4E-09 81.8 0.2 58 597-660 78-143 (276)
481 3hp7_A Hemolysin, putative; st 97.3 0.00014 4.7E-09 78.5 4.2 53 588-641 72-126 (291)
482 1af7_A Chemotaxis receptor met 97.2 0.00038 1.3E-08 74.3 6.7 66 574-643 82-157 (274)
483 2oxt_A Nucleoside-2'-O-methylt 97.2 4.7E-05 1.6E-09 80.8 -0.8 58 597-660 70-135 (265)
484 3giw_A Protein of unknown func 97.2 0.00053 1.8E-08 73.4 7.2 74 588-661 64-143 (277)
485 3sso_A Methyltransferase; macr 97.0 0.0014 4.8E-08 73.7 9.3 64 588-661 204-276 (419)
486 3lst_A CALO1 methyltransferase 97.0 0.00032 1.1E-08 76.6 3.6 65 592-659 175-242 (348)
487 3ua3_A Protein arginine N-meth 96.9 0.00091 3.1E-08 79.5 7.2 60 602-662 410-485 (745)
488 2d9n_A Cleavage and polyadenyl 96.9 0.00038 1.3E-08 60.5 3.0 31 78-109 5-35 (77)
489 3reo_A (ISO)eugenol O-methyltr 96.9 0.00046 1.6E-08 76.2 4.1 62 591-659 192-256 (368)
490 2p41_A Type II methyltransfera 96.9 0.00015 5.3E-09 78.4 0.1 59 598-659 79-142 (305)
491 4a6d_A Hydroxyindole O-methylt 96.9 0.00073 2.5E-08 74.2 5.2 65 593-658 171-237 (353)
492 2cqe_A KIAA1064 protein; CCCH 96.8 0.00038 1.3E-08 63.4 2.2 26 80-106 10-35 (98)
493 2l9w_A U4/U6 snRNA-associated- 96.8 0.0034 1.2E-07 58.0 8.4 73 165-237 21-97 (117)
494 4gqb_A Protein arginine N-meth 96.7 0.0021 7.1E-08 76.2 8.1 60 601-661 357-423 (637)
495 3p9c_A Caffeic acid O-methyltr 96.7 0.00074 2.5E-08 74.4 4.0 63 591-660 190-255 (364)
496 2c7p_A Modification methylase 96.7 0.0014 4.8E-08 71.7 5.5 43 602-644 11-54 (327)
497 1i4w_A Mitochondrial replicati 96.6 0.0014 4.9E-08 72.4 5.4 74 581-661 36-117 (353)
498 1fp1_D Isoliquiritigenin 2'-O- 96.6 0.0012 4.1E-08 72.6 4.8 62 592-660 199-263 (372)
499 2rhk_C Cleavage and polyadenyl 96.6 0.00065 2.2E-08 58.3 1.8 30 78-108 11-40 (72)
500 1boo_A Protein (N-4 cytosine-s 96.5 0.00081 2.8E-08 73.2 2.7 60 600-660 251-310 (323)
No 1
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=100.00 E-value=5.8e-59 Score=527.54 Aligned_cols=339 Identities=29% Similarity=0.468 Sum_probs=279.9
Q ss_pred eccCCcccCCChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEE
Q 002990 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (860)
Q Consensus 301 ~d~v~Pl~hl~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~ 380 (860)
.|.+|+||||+|++||++|++ +|+|++. +. + +|++||.+||||||++|+
T Consensus 86 ~CGGC~lqh~~y~~Ql~~K~~----~l~r~~~------------------------~~--~-~~~~s~~~~~YRnk~~~~ 134 (425)
T 2jjq_A 86 KCGGCTLQHLNYDYQLEFKRK----KLKRILG------------------------FE--V-EVVPSPKIFGHRNRIDLA 134 (425)
T ss_dssp ----CTTTTBCHHHHHHHHHH----HHHHHHS------------------------SC--C-EEECCSCSSSCBCEEEEE
T ss_pred CCCCccCcCCCHHHHHHHHHH----HHHHccC------------------------CC--C-ceecCCCcCCccceEEEE
Confidence 699999999999999999999 7777652 21 3 788999999999999999
Q ss_pred EeeecCCcceEeeeecccCCCc-eeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCC
Q 002990 381 VGYSLQAKPTVGFMLGNFREGV-TAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459 (860)
Q Consensus 381 vg~~~~g~~~vGF~~g~~~~g~-~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~ 459 (860)
|+. |+ +||+ +.++ +.|+++.+||++++.+++++..++++++..++++||..++.|+||+|+||.+..+
T Consensus 135 v~~---g~--~Gf~----~~~s~~~iv~i~~C~i~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~g~lr~~~vr~~~~~-- 203 (425)
T 2jjq_A 135 ITK---DG--IGFR----ERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKFT-- 203 (425)
T ss_dssp EET---TE--EEEE----C--CTTSEEECSCBTTTBHHHHHHHHHHHHHHHHHTCCBBBTTTTBCSEEEEEEEECTTT--
T ss_pred ecC---CC--eEEe----eCCCCCcEEECcCCccCCHHHHHHHHHHHHHHHHcCCCccccccCCCcceEEEEEEccCC--
Confidence 984 44 8884 6778 8899999999999999999999999999999999999999999999999986432
Q ss_pred CCccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcc
Q 002990 460 PLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539 (860)
Q Consensus 460 ~~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~ 539 (860)
+++||+++..+. +.+. | + ..|. ++++|++......+....
T Consensus 204 ----------------g~~~v~l~~~~~--~~~~-------l-~--------~~~~--~~~i~~~~~~~~~~~~~g---- 243 (425)
T 2jjq_A 204 ----------------EEVMVNFVTKEG--NLPD-------P-T--------NYFD--FDSIYWSVNRSKSDVSYG---- 243 (425)
T ss_dssp ----------------CCEEEEEEESSS--CCCC-------C-T--------TTCC--CSEEEEEECCSSSCCSCC----
T ss_pred ----------------CCEEEEEEeCch--hHHH-------H-h--------hcCC--eeEEEEEcCCCCCceecc----
Confidence 579988766543 1111 1 0 1232 578877643332221111
Q ss_pred eecccCCCCCCCCcccccccceEEEEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHH
Q 002990 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL 619 (860)
Q Consensus 540 ~~l~~~~~~~~~~~~~~~G~~~i~E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~L 619 (860)
....++|.++++|.++|+.|.++|.+|||+|+.+++.|+..+.+ +.++.+|||+|||+|++++.|
T Consensus 244 ------------~~~~l~G~~~i~e~~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~l 308 (425)
T 2jjq_A 244 ------------DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYL 308 (425)
T ss_dssp ------------EEEEEEECSCEEEEETTEEEEECTTSCCCSBHHHHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHH
T ss_pred ------------eEEEEECCCeEEEEECCEEEEEccccccccCHHHHHHHHHHhhc---cCCCCEEEEeeccchHHHHHH
Confidence 12345788999999999999999999999999999999999887 467789999999999999999
Q ss_pred HhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCC
Q 002990 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRD 699 (860)
Q Consensus 620 A~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (860)
|+.+.+|+|||+++.|++.|++|++.||++ ++|+++|+.+++.
T Consensus 309 a~~~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~------------------------------------ 351 (425)
T 2jjq_A 309 AKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV------------------------------------ 351 (425)
T ss_dssp HHTTCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC------------------------------------
T ss_pred HHcCCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc------------------------------------
Confidence 999999999999999999999999999998 9999999754210
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeE
Q 002990 700 NVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRL 779 (860)
Q Consensus 700 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rl 779 (860)
. ..|+||+||||.|++..++++|+. .++.++
T Consensus 352 ----------------------------------------------~--~fD~Vv~dPPr~g~~~~~~~~l~~-l~p~gi 382 (425)
T 2jjq_A 352 ----------------------------------------------K--GFDTVIVDPPRAGLHPRLVKRLNR-EKPGVI 382 (425)
T ss_dssp ----------------------------------------------T--TCSEEEECCCTTCSCHHHHHHHHH-HCCSEE
T ss_pred ----------------------------------------------c--CCCEEEEcCCccchHHHHHHHHHh-cCCCcE
Confidence 0 137999999999999999999987 479999
Q ss_pred EEEecCchhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEEEEe
Q 002990 780 VYISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVMLLE 859 (860)
Q Consensus 780 VYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~lLe 859 (860)
|||||||.|++||+..|+ |++.++++|||||||+|||+|++|+
T Consensus 383 vyvsc~p~tlarDl~~l~-------------------------------------y~l~~~~~~DmFP~T~HvE~v~ll~ 425 (425)
T 2jjq_A 383 VYVSCNPETFARDVKMLD-------------------------------------YRIDEIVALDMFPHTPHVELVAKLV 425 (425)
T ss_dssp EEEESCHHHHHHHHHHSS-------------------------------------CCEEEEEEECCSTTSSCCEEEEEEC
T ss_pred EEEECChHHHHhHHhhCe-------------------------------------EEEEEEEEECcCCCCceEEEEEEEC
Confidence 999999999999987762 7799999999999999999999995
No 2
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=100.00 E-value=2e-54 Score=481.30 Aligned_cols=362 Identities=21% Similarity=0.291 Sum_probs=269.9
Q ss_pred eccCCcccCCChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEE
Q 002990 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (860)
Q Consensus 301 ~d~v~Pl~hl~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~ 380 (860)
.|.+|+|+|++|++||++|++.|.++|+|++. + .+ ++++++ +||||||++|+
T Consensus 3 gC~gc~~~~~~y~~Ql~~K~~~v~~~l~r~~~------------~--------------~~-~~~~~~-~~~yRnr~~~~ 54 (369)
T 3bt7_A 3 HMTPEHLPTEQYEAQLAEKVVRLQSMMAPFSD------------L--------------VP-EVFRSP-VSHYRMRAEFR 54 (369)
T ss_dssp CCCCSSCCGGGHHHHHHHHHHHHHHHHTTTCC------------C--------------CC-EEECCC-SSSCBSEEEEE
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHhcCC------------C--------------CC-CccCCC-ccccceEEEEE
Confidence 48899999999999999999999999988641 0 11 344454 79999999999
Q ss_pred EeeecCCcceEeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCCC
Q 002990 381 VGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460 (860)
Q Consensus 381 vg~~~~g~~~vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~~ 460 (860)
|+.. .|...+|| |..+++.++++.+||+.++.+++++..++++++..+ ...+ . +.++.++.+.
T Consensus 55 v~~~-~~~~~~G~----~~~~s~~iv~i~~C~i~~~~i~~~l~~l~~~~~~~~-----~~r~-~-~~~~~~~~~~----- 117 (369)
T 3bt7_A 55 IWHD-GDDLYHII----FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNP-----VLRH-K-LFQIDYLTTL----- 117 (369)
T ss_dssp EEEE-TTEEEEEE----ECTTTCCEEECSCCTTBCHHHHHHHHHHHHHHTTCH-----HHHT-T-EEEEEEEECT-----
T ss_pred EEEc-CCcEEEEE----EECCCCCEEeCcCCccCCHHHHHHHHHHHHHHHhCc-----cccc-e-eEEEEEEecC-----
Confidence 9853 45567788 467788999999999999999999999999886431 0111 1 3344444321
Q ss_pred CccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcce
Q 002990 461 LDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540 (860)
Q Consensus 461 ~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~ 540 (860)
++++||+++.. ..++. .+......|.+.+. ...+...++.. + +
T Consensus 118 --------------~g~~~v~~~~~-~~~~~-~~~~~~~~l~~~~~--------~~~i~~~~~~~----~-----~---- 160 (369)
T 3bt7_A 118 --------------SNQAVVSLLYH-KKLDD-EWRQEAEALRDALR--------AQNLNVHLIGR----A-----T---- 160 (369)
T ss_dssp --------------TCEEEEEEEES-SCCCH-HHHHHHHHHHHHHH--------TTTCEEEEEEE----E-----T----
T ss_pred --------------CCcEEEEEEEC-CCCCH-HHHHHHHHHHHhCc--------CCeeEEEEEeC----C-----C----
Confidence 35788876543 33432 12222333333331 11121111110 0 0
Q ss_pred ecccCCCCCCCCcccccccceEEEEE--CC--eEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHH
Q 002990 541 LLSIPKADGEPEESNDVVEARIHDSI--SN--LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616 (860)
Q Consensus 541 ~l~~~~~~~~~~~~~~~G~~~i~E~i--~g--l~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~ 616 (860)
....++|.+++.|.+ +| +.|.++|.+|||+|+.+++.|+.++.+++... +.+|||||||+|+++
T Consensus 161 -----------~~~~~~G~~~i~e~~~~~g~~~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~ 228 (369)
T 3bt7_A 161 -----------KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFS 228 (369)
T ss_dssp -----------TEEEESSCSEEEEECCBTTBCCEEEEETTSCCCSBHHHHHHHHHHHHHHTTTC-CSEEEEESCTTSHHH
T ss_pred -----------ceEEEcCCCEEEEEeccCCceEEEEECCCCeecCCHHHHHHHHHHHHHHhhcC-CCEEEEccCCCCHHH
Confidence 011236888899988 68 88999999999999999999999999988765 467999999999999
Q ss_pred HHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccC
Q 002990 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDS 696 (860)
Q Consensus 617 L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (860)
+.||+.+.+|+|||+++.|++.|++|++.||++|++|+++|+++++..+.....
T Consensus 229 l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~-------------------------- 282 (369)
T 3bt7_A 229 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE-------------------------- 282 (369)
T ss_dssp HHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCC--------------------------
T ss_pred HHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccc--------------------------
Confidence 999999999999999999999999999999999999999999998765421100
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCC
Q 002990 697 SRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARL 776 (860)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~ 776 (860)
.. ++.+ ..+ .....|+||+||||.|+...+++.|+ ..
T Consensus 283 -~~---------------------~l~~------~~~------------~~~~fD~Vv~dPPr~g~~~~~~~~l~---~~ 319 (369)
T 3bt7_A 283 -FN---------------------RLQG------IDL------------KSYQCETIFVDPPRSGLDSETEKMVQ---AY 319 (369)
T ss_dssp -CT---------------------TGGG------SCG------------GGCCEEEEEECCCTTCCCHHHHHHHT---TS
T ss_pred -cc---------------------cccc------ccc------------ccCCCCEEEECcCccccHHHHHHHHh---CC
Confidence 00 0000 000 00124899999999999999999987 47
Q ss_pred CeEEEEecCchhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEE
Q 002990 777 QRLVYISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVM 856 (860)
Q Consensus 777 ~rlVYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~ 856 (860)
.+||||||||.|++||+..|+. +|++.++++|||||||+|||+|+
T Consensus 320 g~ivyvsc~p~t~ard~~~l~~-----------------------------------~y~~~~~~~~D~FP~T~HvE~v~ 364 (369)
T 3bt7_A 320 PRILYISCNPETLCKNLETLSQ-----------------------------------THKVERLALFDQFPYTHHMQCGV 364 (369)
T ss_dssp SEEEEEESCHHHHHHHHHHHHH-----------------------------------HEEEEEEEEECCSTTSSCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHhh-----------------------------------CcEEEEEEeeccCCCCCcEEEEE
Confidence 9999999999999999988851 27799999999999999999999
Q ss_pred EEeC
Q 002990 857 LLER 860 (860)
Q Consensus 857 lLeR 860 (860)
+|+|
T Consensus 365 ll~r 368 (369)
T 3bt7_A 365 LLTA 368 (369)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 3
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=100.00 E-value=2.8e-54 Score=489.99 Aligned_cols=345 Identities=24% Similarity=0.387 Sum_probs=273.5
Q ss_pred eccCCcccCCChHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchhhhhhhcccCCCCccccccccCCCCcccceeeEEE
Q 002990 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (860)
Q Consensus 301 ~d~v~Pl~hl~Ye~QLe~K~~~v~~~L~rl~~~~~k~~~~~~~~~~w~~~~~~~~gl~~~l~~ii~SP~~~gYRNK~ef~ 380 (860)
.|.+|+||||+|++||++|++.|.++|+|+ + +.++++ .+||||||++|+
T Consensus 86 ~CGGC~~qh~~y~~Ql~~K~~~v~~~l~~~---~--------------------------~~~~~~--~~~~YRnr~~~~ 134 (433)
T 1uwv_A 86 VCGGCQQQHASVDLQQRSKSAALARLMKHD---V--------------------------SEVIAD--VPWGYRRRARLS 134 (433)
T ss_dssp TBTTCSCTTBCHHHHHHHHHHHHHHHHTSC---C--------------------------CEEECC--CSSSCBSEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHHHHHHHHHHh---h--------------------------cccccC--CccccCceEEEe
Confidence 699999999999999999999999999763 0 234444 469999999999
Q ss_pred Eeee-cCCcceEeeeecccCCCceeecCCCCCcCCCHHHHHHHHHHHHHHHhCCCCccccccCCCceEEEEEeecCCCCC
Q 002990 381 VGYS-LQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459 (860)
Q Consensus 381 vg~~-~~g~~~vGF~~g~~~~g~~~V~~~~~C~~v~~~~~~~~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~~~~~~~ 459 (860)
|+++ ..|++.+||+ ..|+|.|+++.+||+.++.+++++..++++++..++ .|.++++.||.+..
T Consensus 135 ~~~~~~~~~~~~Gf~----~~~s~~iv~i~~C~i~~~~~~~~~~~l~~~~~~~~~--------~~~~~~i~~~~~~~--- 199 (433)
T 1uwv_A 135 LNYLPKTQQLQMGFR----KAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA--------MRHLGHVELVQATS--- 199 (433)
T ss_dssp EEEETTTTEEEEEEE----BTTSSCEEECSCCTTBCHHHHHHHHHHHHHHTTCGG--------GGGEEEEEEEEETT---
T ss_pred eeEccCCCcEEEEEE----cCCCCcEEECccCcCCCHHHHHHHHHHHHHHHhcCC--------CCCccEEEEEEeCC---
Confidence 9864 4567788995 677899999999999999999999999999986533 37799999997631
Q ss_pred CCccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEEEecCCCccccCCCCcc
Q 002990 460 PLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539 (860)
Q Consensus 460 ~~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~ 539 (860)
++.|++. ....++.+. ...+.++.+.. .++++++.. ..++
T Consensus 200 ----------------~~~l~~~--~~~~l~~~~-~~~~~~~~~~~------------~~~~~~~~~---------~~~~ 239 (433)
T 1uwv_A 200 ----------------GTLMILR--HTAPLSSAD-REKLERFSHSE------------GLDLYLAPD---------SEIL 239 (433)
T ss_dssp ----------------EEEEEEE--ESSCCCHHH-HHHHHHHHHHH------------TCEEEEESS---------SSCC
T ss_pred ----------------CcEEEEE--ecCCCCHHH-HHHHHHHhhcc------------cEEEEEECC---------CCeE
Confidence 2444432 233344321 12223332221 135554311 1122
Q ss_pred eecccCCCCCCCCcccccccceEEEEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHH
Q 002990 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL 619 (860)
Q Consensus 540 ~~l~~~~~~~~~~~~~~~G~~~i~E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~L 619 (860)
.. ++|...+++ ++|++|.++|.+|||+|..+++.|+..+.+++.+.++.+|||+|||+|++++.|
T Consensus 240 ~~--------------l~g~~~~~~-~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~l 304 (433)
T 1uwv_A 240 ET--------------VSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 (433)
T ss_dssp EE--------------EECCCCEEE-ETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHH
T ss_pred EE--------------EeCCCcEEE-ECCEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHH
Confidence 22 246666777 899999999999999999999999999999988888889999999999999999
Q ss_pred HhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCC
Q 002990 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRD 699 (860)
Q Consensus 620 A~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (860)
|+.+.+|+|||+++.|++.|++|++.|++.|++|+++|+.+.+..+. +.
T Consensus 305 a~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~--~~----------------------------- 353 (433)
T 1uwv_A 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP--WA----------------------------- 353 (433)
T ss_dssp HTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG--GG-----------------------------
T ss_pred HhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh--hh-----------------------------
Confidence 99999999999999999999999999999999999999765322110 00
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeE
Q 002990 700 NVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRL 779 (860)
Q Consensus 700 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rl 779 (860)
+ . ..|+||+||||.|++ .+++.|... .+++|
T Consensus 354 -----------------------------------------~----~--~fD~Vv~dPPr~g~~-~~~~~l~~~-~p~~i 384 (433)
T 1uwv_A 354 -----------------------------------------K----N--GFDKVLLDPARAGAA-GVMQQIIKL-EPIRI 384 (433)
T ss_dssp -----------------------------------------T----T--CCSEEEECCCTTCCH-HHHHHHHHH-CCSEE
T ss_pred -----------------------------------------c----C--CCCEEEECCCCccHH-HHHHHHHhc-CCCeE
Confidence 0 0 237999999999997 789999874 79999
Q ss_pred EEEecCchhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEEEEe
Q 002990 780 VYISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVMLLE 859 (860)
Q Consensus 780 VYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~lLe 859 (860)
|||||||.||+||+..|.. .+|++.++++|||||||+|||+|++|+
T Consensus 385 vyvsc~p~tlard~~~l~~----------------------------------~Gy~~~~~~~~d~Fp~t~HvE~v~ll~ 430 (433)
T 1uwv_A 385 VYVSCNPATLARDSEALLK----------------------------------AGYTIARLAMLDMFPHTGHLESMVLFS 430 (433)
T ss_dssp EEEESCHHHHHHHHHHHHH----------------------------------TTCEEEEEEEECCSTTSSCCEEEEEEE
T ss_pred EEEECChHHHHhhHHHHHH----------------------------------CCcEEEEEEEeccCCCCCeEEEEEEEE
Confidence 9999999999999988851 247899999999999999999999998
Q ss_pred C
Q 002990 860 R 860 (860)
Q Consensus 860 R 860 (860)
|
T Consensus 431 r 431 (433)
T 1uwv_A 431 R 431 (433)
T ss_dssp C
T ss_pred E
Confidence 7
No 4
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.95 E-value=1.4e-26 Score=259.10 Aligned_cols=288 Identities=10% Similarity=0.030 Sum_probs=201.7
Q ss_pred cCCCCcccceeeEE--EEee-----ecCCc-ceEeeeecccCCCc---eeecCCCCCcCCCHHH-HHHHHHH---HHHHH
Q 002990 366 GSPLVNGYRNKCEF--SVGY-----SLQAK-PTVGFMLGNFREGV---TAVEEPVDCPNVSEIA-CKYASIF---QEFLQ 430 (860)
Q Consensus 366 ~SP~~~gYRNK~ef--~vg~-----~~~g~-~~vGF~~g~~~~g~---~~V~~~~~C~~v~~~~-~~~~~~~---~~~l~ 430 (860)
.+..+|.||||+++ .+|. +.+|+ ...||+ ..++ +.|++..+|++..+.. +++.+++ +.|++
T Consensus 15 ~~~~pw~y~n~~~~~~~~g~~v~v~~~~g~~l~~g~~----~~~s~i~~ri~~~~~~~i~~~~~~~~~~~a~~~r~~~~~ 90 (385)
T 2b78_A 15 KRGVQLLSSRDYPNLNLDNQVVQLYSDADIFLGTAYL----SKQNKGVGWLISPKKVSLNVTYFIKLFQWSKDKRKNFAH 90 (385)
T ss_dssp HHTCCEEEGGGSTTCCCCSEEEEEECTTCCEEEEEEE----EEETTEEEEEEESSCCCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred hcCCCeEEHHHhCCCCCCCCEEEEEcCCCCEEEEEEE----CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35567999999999 5553 23565 567775 4444 5677777898877643 4454555 88888
Q ss_pred hCCCCccccccCCC-ceEEEEEeecCCCCCCCccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhcc
Q 002990 431 QSDLPVWNRFKNSG-FWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGA 509 (860)
Q Consensus 431 ~s~l~~yd~~~~~G-~wR~L~VR~~~~~~~~~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~ 509 (860)
+.+.+.|+...+.| +|+.|+||.. +++|+ +++.+.+. ......|.+.|.+.
T Consensus 91 ~~~~~~yr~~~~egd~l~gl~vd~~---------------------g~~~v-v~~~~~~~-----~~~~~~i~~~l~~~- 142 (385)
T 2b78_A 91 SKLTTAYRLFNQDGDSFGGVTIDCY---------------------GDFVL-FSWYNSFV-----YQIRDEIVAAFRQV- 142 (385)
T ss_dssp CSSCCEEEEEEGGGGTCTTEEEEEE---------------------TTEEE-EEECSHHH-----HHTHHHHHHHHHHH-
T ss_pred CCCCceEEEEeCCCCCCCceEEEEE---------------------CCEEE-EEECcHHH-----HHhHHHHHHHHHHH-
Confidence 77899999999997 7999999952 35665 44544322 12234455555432
Q ss_pred ccCCCCCCeeEEEEEecCCCccccCCCCcceecccCCCCCCCCcccccccc---eEEEEECCeEEEEcCC-----CcccC
Q 002990 510 TASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA---RIHDSISNLRFCISPT-----AFFQV 581 (860)
Q Consensus 510 ~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~~~~~~~~~~G~~---~i~E~i~gl~f~isp~-----sFFQv 581 (860)
.|. ++++|++.... .+ ....+ .++|.. ++.-.-.|++|.+++. +|| .
T Consensus 143 ---~~~--~~~i~~~~~~~-~~----~~~~~--------------~l~G~~~~~~~~v~e~g~~f~v~~~~~~~t~ff-~ 197 (385)
T 2b78_A 143 ---YPN--FLGAYEKIRFK-GI----DNVSA--------------HLYGQEAPEQFLILENGISYNVFLNDGLMTGIF-L 197 (385)
T ss_dssp ---STT--CSEEEEEECC---------CCEE--------------EEEESCCCSSEEEEETTEEEEECSSSSSCCSSC-G
T ss_pred ---hCC--CCEEEEechhh-cC----Cccce--------------eecCCCCCceEEEEECCEEEEEeccccccCCcC-C
Confidence 121 56887763221 11 11111 234553 5532228999999998 999 8
Q ss_pred CHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEEccH
Q 002990 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK--NCRFVCAKA 658 (860)
Q Consensus 582 N~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~--Nv~fi~gDa 658 (860)
|...++.++.... .++.+|||+|||+|++++.+|+. +++|+|||+++.|++.|++|++.||+. |++|+++|+
T Consensus 198 ~~~~~~~~~~~~~-----~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~ 272 (385)
T 2b78_A 198 DQRQVRNELINGS-----AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV 272 (385)
T ss_dssp GGHHHHHHHHHTT-----TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH
T ss_pred cHHHHHHHHHHHh-----cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH
Confidence 9888888875332 45789999999999999999985 469999999999999999999999997 899999999
Q ss_pred HHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccc
Q 002990 659 EDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCT 738 (860)
Q Consensus 659 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 738 (860)
.+++..+..+.
T Consensus 273 ~~~l~~~~~~~--------------------------------------------------------------------- 283 (385)
T 2b78_A 273 FDYFKYARRHH--------------------------------------------------------------------- 283 (385)
T ss_dssp HHHHHHHHHTT---------------------------------------------------------------------
T ss_pred HHHHHHHHHhC---------------------------------------------------------------------
Confidence 99876543210
Q ss_pred cCCCCCCCCCCccEEEEcCCCC----CCcHHHHH-------HHHhccCCCeEEEEecCchhhHHHH
Q 002990 739 SEGNSLAQPFKNVVAIVDPPRG----GLHPTVIK-------ILRTHARLQRLVYISCNPETLVANA 793 (860)
Q Consensus 739 ~~~~~~~~~~~~dv~IvDPPR~----Gl~~~vi~-------~lr~~~~~~rlVYVSCnp~tl~rD~ 793 (860)
...|+||+|||+. |....+++ .+....++..++|+||++.++.+|.
T Consensus 284 ---------~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~ 340 (385)
T 2b78_A 284 ---------LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQ 340 (385)
T ss_dssp ---------CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH
T ss_pred ---------CCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHH
Confidence 0238999999996 34333333 2334567899999999999988774
No 5
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.93 E-value=2.6e-24 Score=241.04 Aligned_cols=280 Identities=11% Similarity=0.073 Sum_probs=197.7
Q ss_pred ceeeEEEEeeecCCc-ceEeeeecccCCCc---eeecCCC-CCcCCCHHHHHHHHHHHHHHHhC----CCCccccccCCC
Q 002990 374 RNKCEFSVGYSLQAK-PTVGFMLGNFREGV---TAVEEPV-DCPNVSEIACKYASIFQEFLQQS----DLPVWNRFKNSG 444 (860)
Q Consensus 374 RNK~ef~vg~~~~g~-~~vGF~~g~~~~g~---~~V~~~~-~C~~v~~~~~~~~~~~~~~l~~s----~l~~yd~~~~~G 444 (860)
++...+.|. +.+|+ ..+|| |..++ +.|++.. +|++..+.+.+.+....++++.. +..+|+...+.|
T Consensus 35 ~~g~~v~v~-~~~g~~l~~G~----~~~~s~~~~ri~~~~~~~~i~~~~~~~~l~~a~~~~~~~~~~~~~~~yrl~~~eg 109 (396)
T 3c0k_A 35 SLGETIDIV-DHQGKWLARGA----YSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSYRLIAGES 109 (396)
T ss_dssp CTTCEEEEE-CTTCCEEEEEE----ECTTSSEEEEEEESCTTCCCSHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEGGG
T ss_pred CCCCEEEEE-cCCCCEEEEEE----ECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 444445553 34666 46777 45555 7788888 99999998888777777666654 899999999999
Q ss_pred -ceEEEEEeecCCCCCCCccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccccCCCCCCeeEEEE
Q 002990 445 -FWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVI 523 (860)
Q Consensus 445 -~wR~L~VR~~~~~~~~~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~sl~~ 523 (860)
+|+.|+|+.. +++||+. +.+.+. ......+.+.|.+. ++++++|+
T Consensus 110 d~l~gl~vd~~---------------------g~~~v~~-~~~~~~-----~~~~~~i~~~l~~~-------~~~~~i~~ 155 (396)
T 3c0k_A 110 DGLPGITIDRF---------------------GNFLVLQ-LLSAGA-----EYQRAALISALQTL-------YPECSIYD 155 (396)
T ss_dssp GTCTTEEEEEE---------------------TTEEEEE-ECSHHH-----HHTHHHHHHHHHHH-------CTTSEEEE
T ss_pred CCCCceEEEEE---------------------CCEEEEE-ECCHHH-----HHHHHHHHHHHHHh-------cCCCEEEE
Confidence 8999999952 4677654 443221 12234455555432 13568877
Q ss_pred EecCCCccccCCCCcceecccCCCCCCCCccccccc---ceEEEEECCeEEEEcCC-----CcccCCHHHHHHHHHHHhh
Q 002990 524 QDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVE---ARIHDSISNLRFCISPT-----AFFQVNTLAAEKLYSLGGD 595 (860)
Q Consensus 524 q~~~~~sn~~~~d~~~~~l~~~~~~~~~~~~~~~G~---~~i~E~i~gl~f~isp~-----sFFQvN~~~ae~L~~~i~~ 595 (860)
. .....+.... .+.....++|. .++.+..+|++|.+++. +|||.+...... +.+
T Consensus 156 ~-~~~~~~~~~g-------------~~~~~~~l~G~~~~~~~~~~~~g~~f~v~~~~~~~tgff~~~~~~~~~----l~~ 217 (396)
T 3c0k_A 156 R-SDVAVRKKEG-------------MELTQGPVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLA----TRR 217 (396)
T ss_dssp E-ECCTHHHHTT-------------CCCEEEEEESCCCCSSEEEEETTEEEEECTTTSSTTSSCGGGHHHHHH----HHH
T ss_pred e-CCchhHhhcC-------------CCccceeEcCCCCCceEEEEECCEEEEEeccccccCCcCcCHHHHHHH----HHH
Confidence 6 2211110000 00112234566 37888999999999998 999987765332 333
Q ss_pred hccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC-C-cEEEEEccHHHHHHHHhhhhcCC
Q 002990 596 WADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGI-K-NCRFVCAKAEDVMGSLLKDYLNP 672 (860)
Q Consensus 596 ~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi-~-Nv~fi~gDae~~~~~l~~~~~~~ 672 (860)
+ .++.+|||+|||+|++++.+|+. +.+|+|||+++.|++.|++|++.||+ . +++|+++|+.+++..+.++.
T Consensus 218 ~---~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~--- 291 (396)
T 3c0k_A 218 Y---VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRG--- 291 (396)
T ss_dssp H---CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTT---
T ss_pred h---hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcC---
Confidence 3 36789999999999999999998 57999999999999999999999999 7 89999999999876543210
Q ss_pred ccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccE
Q 002990 673 LREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVV 752 (860)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 752 (860)
...|+
T Consensus 292 ---------------------------------------------------------------------------~~fD~ 296 (396)
T 3c0k_A 292 ---------------------------------------------------------------------------EKFDV 296 (396)
T ss_dssp ---------------------------------------------------------------------------CCEEE
T ss_pred ---------------------------------------------------------------------------CCCCE
Confidence 02389
Q ss_pred EEEcCCCC------------CCcHHHHHHHHhccCCCeEEEEecCchhhHHH
Q 002990 753 AIVDPPRG------------GLHPTVIKILRTHARLQRLVYISCNPETLVAN 792 (860)
Q Consensus 753 ~IvDPPR~------------Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD 792 (860)
||+||||. |++.-+..+++. .++..++|+||++.++.+|
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~-LkpgG~l~~~~~~~~~~~~ 347 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQL-LNEGGILLTFSCSGLMTSD 347 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHT-EEEEEEEEEEECCTTCCHH
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHh-cCCCcEEEEEeCCCcCCHH
Confidence 99999994 444444445554 5789999999999998876
No 6
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=99.93 E-value=1.3e-24 Score=242.57 Aligned_cols=236 Identities=15% Similarity=0.145 Sum_probs=162.2
Q ss_pred cCCCCcccceeeEE--------EEeeecCCc-ceEeeeecccCCCc---eeecCCC-CCcCCCHHHHHHHHHH---HHHH
Q 002990 366 GSPLVNGYRNKCEF--------SVGYSLQAK-PTVGFMLGNFREGV---TAVEEPV-DCPNVSEIACKYASIF---QEFL 429 (860)
Q Consensus 366 ~SP~~~gYRNK~ef--------~vg~~~~g~-~~vGF~~g~~~~g~---~~V~~~~-~C~~v~~~~~~~~~~~---~~~l 429 (860)
.++.+|+||||++| +|+. +|+ ..+||+ ..++ +.|++.. +|++..+.+..+..++ +.++
T Consensus 14 ~~~~p~~yrn~~~~~~~~~g~v~v~~--~g~~l~~g~~----~~~s~~~~ri~~~~~~~~i~~~~~~~l~~~~~~r~~~~ 87 (382)
T 1wxx_A 14 LSRHLWVFRRDVVSGPETPGLYPVYW--GRRFLALALY----NPHTDLAVRAYRFAPAEDPVAALLENLAQALARREAVL 87 (382)
T ss_dssp HTTCCEECGGGEEECCSSCEEEEEEE--TTEEEEEEEE----CTTSSSCEEEEESSCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEhhhhccCCCCCeEEEEEE--CCEEEEEEEE----CCCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 35668999999999 8875 675 567874 5555 7777776 7987666222222222 2233
Q ss_pred HhCCCCccccccCCC-ceEEEEEeecCCCCCCCccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhc
Q 002990 430 QQSDLPVWNRFKNSG-FWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAG 508 (860)
Q Consensus 430 ~~s~l~~yd~~~~~G-~wR~L~VR~~~~~~~~~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~ 508 (860)
++.+.++|+...+.| +|+.|+||.. +++||++. .+.+. ......+.+.|.+.
T Consensus 88 ~~~~~~~yr~~~~~~d~l~~l~vd~~---------------------g~~~vv~~-~~~~~-----~~~~~~i~~~l~~~ 140 (382)
T 1wxx_A 88 RQDPEGGYRLVHAEGDLLPGLVVDYY---------------------AGHAVVQA-TAHAW-----EGLLPQVAEALRPH 140 (382)
T ss_dssp HHCTTSEEEEEEGGGGTCTTEEEEEE---------------------TTEEEEEE-CSHHH-----HTTHHHHHHHHGGG
T ss_pred hcCCCCeEEEEeCCCCCCCcEEEEEE---------------------CCEEEEEE-CcHHH-----HHHHHHHHHHHHHH
Confidence 234899999999877 8999999952 36776654 33221 12345566666431
Q ss_pred cccCCCCCCeeEEEEEecCCCccccCCCCcceecccCCCCCCCCcccccccc--eEEEEECCeEEEEcCC-----CcccC
Q 002990 509 ATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA--RIHDSISNLRFCISPT-----AFFQV 581 (860)
Q Consensus 509 ~~~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~~~~~~~~~~G~~--~i~E~i~gl~f~isp~-----sFFQv 581 (860)
+ +++|.. .....+....- +.....++|.. .+....+|++|.+++. +|||.
T Consensus 141 -------~--~~i~~~-~~~~~~~~~~~-------------~~~~~~l~G~~~~~~~~~e~g~~f~i~~~~~~~~g~f~~ 197 (382)
T 1wxx_A 141 -------V--QSVLAK-NDARTRELEGL-------------PLYVRPLLGEVPERVQVQEGRVRYLVDLRAGQKTGAYLD 197 (382)
T ss_dssp -------C--SEEEEE-ECCTHHHHTTC-------------CCEEEEEESCCCSEEEEEETTEEEEEECSTTSCCCCCGG
T ss_pred -------h--hEEEEc-CCchhhhhcCC-------------CcccceecCCCCceEEEEECCEEEEEEchhcccCccccc
Confidence 1 677765 22211110000 00112234553 6777789999999997 78886
Q ss_pred CHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 582 N~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
....... + ..+ ++.+|||+|||+|++++.+|+.+.+|+|||+++.|++.|++|++.||+.|++|+++|+.++
T Consensus 198 ~~~~~~~----~---~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~ 269 (382)
T 1wxx_A 198 QRENRLY----M---ERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL 269 (382)
T ss_dssp GHHHHHH----G---GGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH
T ss_pred hHHHHHH----H---Hhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHH
Confidence 5543222 2 233 6789999999999999999998889999999999999999999999999999999999998
Q ss_pred HHHH
Q 002990 662 MGSL 665 (860)
Q Consensus 662 ~~~l 665 (860)
+..+
T Consensus 270 ~~~~ 273 (382)
T 1wxx_A 270 LRRL 273 (382)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 7
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=99.91 E-value=1.2e-23 Score=235.66 Aligned_cols=240 Identities=18% Similarity=0.199 Sum_probs=170.5
Q ss_pred CCcccceeeEEE-----Eee-----ecCCc-ceEeeeecccCCCc---eeecCCC-CCcCCCHHHHHHHHHHHHHHHhC-
Q 002990 369 LVNGYRNKCEFS-----VGY-----SLQAK-PTVGFMLGNFREGV---TAVEEPV-DCPNVSEIACKYASIFQEFLQQS- 432 (860)
Q Consensus 369 ~~~gYRNK~ef~-----vg~-----~~~g~-~~vGF~~g~~~~g~---~~V~~~~-~C~~v~~~~~~~~~~~~~~l~~s- 432 (860)
.+|.||||+++. +|. +.+|+ ..+|| |..++ +.|++.. +|++..+.+.+.+....++++..
T Consensus 18 ~pw~yrn~i~~~~~~~~~g~~v~v~~~~g~~l~~G~----~~~~s~~~~ri~~~~~~~~i~~~~~~~~l~~~~~~~~~~~ 93 (396)
T 2as0_A 18 AMIVFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGF----ANPNSNIMVRIVTKDKDVEINKDLFKRRIKKANEYRKKVL 93 (396)
T ss_dssp CCEEEGGGEEEEESCCCTTCEEEEEETTCCEEEEEE----ECTTSSEEEEEEESCTTCCCSHHHHHHHHHHHHHHHHHTS
T ss_pred CcEEEHHHccccCCCCCCCCEEEEEcCCCCEEEEEE----ECCCChHHeehhccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 469999999998 442 13565 45677 55666 7788888 99999999999999999888887
Q ss_pred -CCCccccccCCC-ceEEEEEeecCCCCCCCccccchhcccccccceEEEEEEecCCCcchHhhhHHHHHHHHHHHhccc
Q 002990 433 -DLPVWNRFKNSG-FWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGAT 510 (860)
Q Consensus 433 -~l~~yd~~~~~G-~wR~L~VR~~~~~~~~~~~~~~~~~~~~~~~~evmliv~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 510 (860)
+.+.|+...+.| +|+.|+|+.. +++|++. +.+.+.. .....+.+.+.+.
T Consensus 94 ~~~~~yrl~~~~gd~l~gl~vd~~---------------------g~~~v~~-~~~~~~~-----~~~~~i~~~l~~~-- 144 (396)
T 2as0_A 94 KYTNVYRMVYGEADYLPGLIVDRF---------------------NDIASLQ-ISSAGME-----RFKLDVAEAIMEV-- 144 (396)
T ss_dssp CCCSEEEEEEGGGGTCTTEEEEEE---------------------TTEEEEE-ECCHHHH-----TTHHHHHHHHHHH--
T ss_pred cCCCeEEEEecCCCCCCcEEEEEE---------------------CCEEEEE-ECcHHHH-----HHHHHHHHHHHHh--
Confidence 889999999998 8999999842 4677654 4432211 1234444444431
Q ss_pred cCCCCCCeeEEEEEecCCCccccCCCCcceecccCCCCCCCCcccccccc--eEEEEECCeEEEEcCC----CcccCCHH
Q 002990 511 ASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA--RIHDSISNLRFCISPT----AFFQVNTL 584 (860)
Q Consensus 511 ~~~~~~~~~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~~~~~~~~~~G~~--~i~E~i~gl~f~isp~----sFFQvN~~ 584 (860)
.+ .++++|++ .....+....- +.....++|.. .+....+|++|.+++. +|||....
T Consensus 145 --~~--~~~~i~~~-~~~~~~~~~~~-------------~~~~~~l~g~~~~~~~~~e~g~~~~~~~~~~~tg~f~~~~~ 206 (396)
T 2as0_A 145 --EP--GIETVFEK-NTGRSRRREGL-------------PEIERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQRE 206 (396)
T ss_dssp --CT--TCCEEEEE-ECSHHHHHTTC-------------CCEEEEEEESCCCEEEEEETTEEEEEESSSSSSCCCSTTHH
T ss_pred --CC--CCCEEEEe-CCcchHhhcCC-------------CcccceecCCCCceEEEEeCCEEEEEeccccccCccCCHHH
Confidence 11 35788876 22111110000 00112234554 5666679999999985 69986554
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVM 662 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~~~ 662 (860)
.. ..+..++ .++.+|||+|||+|++++.+|+. +.+|+|||+++.|++.|++|++.||+. +++|+++|+.+++
T Consensus 207 ~~----~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~ 280 (396)
T 2as0_A 207 NR----LALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM 280 (396)
T ss_dssp HH----HHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HH----HHHHHHh--hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHH
Confidence 32 2233332 36789999999999999999998 579999999999999999999999997 8999999999987
Q ss_pred HHH
Q 002990 663 GSL 665 (860)
Q Consensus 663 ~~l 665 (860)
..+
T Consensus 281 ~~~ 283 (396)
T 2as0_A 281 EKL 283 (396)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 8
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=3e-20 Score=198.14 Aligned_cols=184 Identities=15% Similarity=0.110 Sum_probs=141.3
Q ss_pred cccccc--eEEEEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC--EEEEEe
Q 002990 555 NDVVEA--RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGIE 630 (860)
Q Consensus 555 ~~~G~~--~i~E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~--~VigVE 630 (860)
.++|.+ ++++ ..|+.|.++|..|||.+...++.++. +..+.++.+|||+|||+|++++.+|+.+. +|+|||
T Consensus 76 ~l~G~~~~~~~~-e~g~~f~~~~~~~f~~~~~~~e~~~~----~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD 150 (272)
T 3a27_A 76 ILYGKETETIHK-EYGCLFKLDVAKIMWSQGNIEERKRM----AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIE 150 (272)
T ss_dssp EEECSCCEEEEE-ETTEEEEEETTTSCCCGGGHHHHHHH----HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEE
T ss_pred EEeCCCcEEEEE-ECCEEEEEechhEEECCCchHHHHHH----HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEe
Confidence 345665 3433 48999999999999999988888762 22356788999999999999999999865 999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCC
Q 002990 631 MNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQ 710 (860)
Q Consensus 631 is~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (860)
+++.|++.|++|++.|++.|+.|+++|+.++ +. .
T Consensus 151 ~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~---~------------------------------------------ 184 (272)
T 3a27_A 151 KNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL---K------------------------------------------ 184 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC---T------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc---c------------------------------------------
Confidence 9999999999999999999999999997642 10 0
Q ss_pred CCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCch---
Q 002990 711 DPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPE--- 787 (860)
Q Consensus 711 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~--- 787 (860)
. ..|+||+|||+ |+..-+..+++. .++..++|+||++.
T Consensus 185 -----------------------------------~--~~D~Vi~d~p~-~~~~~l~~~~~~-LkpgG~l~~s~~~~~~~ 225 (272)
T 3a27_A 185 -----------------------------------D--VADRVIMGYVH-KTHKFLDKTFEF-LKDRGVIHYHETVAEKI 225 (272)
T ss_dssp -----------------------------------T--CEEEEEECCCS-SGGGGHHHHHHH-EEEEEEEEEEEEEEGGG
T ss_pred -----------------------------------C--CceEEEECCcc-cHHHHHHHHHHH-cCCCCEEEEEEcCcccc
Confidence 0 23899999999 776555555554 57899999999986
Q ss_pred ---hhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccC-CCCCceeEEEEEe
Q 002990 788 ---TLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLF-PHTSHCEMVMLLE 859 (860)
Q Consensus 788 ---tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmF-PhT~HvE~V~lLe 859 (860)
++.+++..|.. ..||. +.+..+..+++| |+|.|+=.-+.+.
T Consensus 226 ~~~~~~~~~~~~~~-----------~~~~~--------------------~~~~~~~~v~~~~p~~~~~~~d~~~~ 270 (272)
T 3a27_A 226 MYERPIERLKFYAE-----------KNGYK--------------------LIDYEVRKIKKYAPGVWHVVVDAKFE 270 (272)
T ss_dssp TTTHHHHHHHHHHH-----------HTTEE--------------------EEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccccHHHHHHHHHH-----------HhCCe--------------------eEEeEEEEEEEECCCCCEEEEEEEEe
Confidence 56666555531 12221 345678899999 9999987655543
No 9
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=99.68 E-value=8.5e-17 Score=176.65 Aligned_cols=171 Identities=13% Similarity=0.183 Sum_probs=130.5
Q ss_pred EEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHH
Q 002990 564 DSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 564 E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA 643 (860)
...+|++|.+++..|||.+...++.+ .+..++ .++.+|||+|||+|.+++. |+.+.+|+|||+++.|++.|++|+
T Consensus 162 ~~e~g~~f~~d~~~~~~~~~~~~er~--~i~~~~--~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~ 236 (336)
T 2yx1_A 162 HKENGYRLWVDIAKVYFSPRLGGERA--RIMKKV--SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNI 236 (336)
T ss_dssp EEETTEEEEEETTTSCCCGGGHHHHH--HHHHHC--CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHH
T ss_pred EEECCEEEEEehHHhccCCccHHHHH--HHHHhc--CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHH
Confidence 44489999999999999998888877 344443 4678999999999999999 988889999999999999999999
Q ss_pred HHcCC-CcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 002990 644 EINGI-KNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCP 722 (860)
Q Consensus 644 ~~Ngi-~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 722 (860)
+.|++ .+++|+++|+.+++ .
T Consensus 237 ~~n~l~~~v~~~~~D~~~~~----~------------------------------------------------------- 257 (336)
T 2yx1_A 237 KLNKLEHKIIPILSDVREVD----V------------------------------------------------------- 257 (336)
T ss_dssp HHTTCTTTEEEEESCGGGCC----C-------------------------------------------------------
T ss_pred HHcCCCCcEEEEECChHHhc----C-------------------------------------------------------
Confidence 99999 58999999976532 0
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCC-eEEEEecCchhhHHHHHHhcCCCC
Q 002990 723 EGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQ-RLVYISCNPETLVANAIELCTPSP 801 (860)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~-rlVYVSCnp~tl~rD~~~L~~p~~ 801 (860)
..|+||+|||+.+. .+++.+.....+. .|+|.+|.+. .. .+.++..
T Consensus 258 --------------------------~fD~Vi~dpP~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-~~-~~~~~l~--- 304 (336)
T 2yx1_A 258 --------------------------KGNRVIMNLPKFAH--KFIDKALDIVEEGGVIHYYTIGKD-FD-KAIKLFE--- 304 (336)
T ss_dssp --------------------------CEEEEEECCTTTGG--GGHHHHHHHEEEEEEEEEEEEESS-SH-HHHHHHH---
T ss_pred --------------------------CCcEEEECCcHhHH--HHHHHHHHHcCCCCEEEEEEeecC-ch-HHHHHHH---
Confidence 13799999999886 5666665544455 5777789887 33 3333220
Q ss_pred CcccccccccCccccccccccccccccCCCCCCccceeeeeec-cCCCCCceeEEEEEeC
Q 002990 802 DKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVD-LFPHTSHCEMVMLLER 860 (860)
Q Consensus 802 ~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vD-mFPhT~HvE~V~lLeR 860 (860)
.. ..|.+..+..++ ++|++.|+...+.+.+
T Consensus 305 --------~~---------------------~~~~i~~~~~v~~~~p~~~~~~~~~~l~~ 335 (336)
T 2yx1_A 305 --------KK---------------------CDCEVLEKRIVKSYAPREYILALDFKINK 335 (336)
T ss_dssp --------HH---------------------SEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --------Hh---------------------cCCcEEEEEEEeccCCCCCEEEEEEEEec
Confidence 00 025566666664 6699999999888753
No 10
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.59 E-value=2.1e-14 Score=144.67 Aligned_cols=129 Identities=17% Similarity=0.110 Sum_probs=105.4
Q ss_pred cccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 002990 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656 (860)
Q Consensus 578 FFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~g 656 (860)
.|+.+...+..++..+... ...++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|+.|++.+++ +++++++
T Consensus 27 ~~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~ 104 (207)
T 1wy7_A 27 QYRTPGNAASELLWLAYSL-GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIG 104 (207)
T ss_dssp CCCCCHHHHHHHHHHHHHT-TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEES
T ss_pred eecCchHHHHHHHHHHHHc-CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEEC
Confidence 3778888888888766544 45567899999999999999999884 5899999999999999999999998 8999999
Q ss_pred cHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccc
Q 002990 657 KAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKD 736 (860)
Q Consensus 657 Dae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 736 (860)
|+.++ +
T Consensus 105 d~~~~-~------------------------------------------------------------------------- 110 (207)
T 1wy7_A 105 DVSEF-N------------------------------------------------------------------------- 110 (207)
T ss_dssp CGGGC-C-------------------------------------------------------------------------
T ss_pred chHHc-C-------------------------------------------------------------------------
Confidence 86541 0
Q ss_pred cccCCCCCCCCCCccEEEEcCC----CCCCcHHHHHHHHhccCCCeEEEEec--CchhhHHHHHHh
Q 002990 737 CTSEGNSLAQPFKNVVAIVDPP----RGGLHPTVIKILRTHARLQRLVYISC--NPETLVANAIEL 796 (860)
Q Consensus 737 ~~~~~~~~~~~~~~dv~IvDPP----R~Gl~~~vi~~lr~~~~~~rlVYVSC--np~tl~rD~~~L 796 (860)
. ..|+||+||| +.|....+++.+.... ..+|++| ++.++......|
T Consensus 111 ---------~--~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~~~~~~~~~~~~~~l 162 (207)
T 1wy7_A 111 ---------S--RVDIVIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIHLAKPEVRRFIEKFS 162 (207)
T ss_dssp ---------C--CCSEEEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEEECCHHHHHHHHHHH
T ss_pred ---------C--CCCEEEEcCCCccccCCchHHHHHHHHHhc---CcEEEEEeCCcCCHHHHHHHH
Confidence 0 1279999999 8888888888876653 7899999 888877665444
No 11
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.58 E-value=9.7e-15 Score=155.91 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=85.2
Q ss_pred cccccceEEE-EECCeEEEEcC--CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEe
Q 002990 555 NDVVEARIHD-SISNLRFCISP--TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIE 630 (860)
Q Consensus 555 ~~~G~~~i~E-~i~gl~f~isp--~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVE 630 (860)
.++|.+++.+ ...|+.|.+.+ ..|||.|......++.. +.++.+|||+|||+|.+++.+|+.+. +|+|||
T Consensus 82 ~l~G~~~~~~~~e~g~~f~~d~~~~~f~~~~~~~~~~l~~~------~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD 155 (278)
T 2frn_A 82 LLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKV------AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIE 155 (278)
T ss_dssp EEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHH------CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEEC
T ss_pred EEECCCCEEEEEECCEEEEEEccceeEcCCcHHHHHHHHHh------CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEE
Confidence 4467666554 57999999965 67999999988887764 34678999999999999999999875 699999
Q ss_pred CCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 631 MNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 631 is~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
+++.|++.|++|++.|++.+ ++|+++|+.+
T Consensus 156 ~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~ 186 (278)
T 2frn_A 156 KDPYTFKFLVENIHLNKVEDRMSAYNMDNRD 186 (278)
T ss_dssp CCHHHHHHHHHHHHHTTCTTTEEEECSCTTT
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEECCHHH
Confidence 99999999999999999976 9999999754
No 12
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=132.64 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=69.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.-.+.+|||+|||+.+++++|+++|+++ .|..+++.+ ++++|||||+|.++++|++||+.|||..|+|++|+|..
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3446789999999999999999999999 455555554 56789999999999999999999999999999999999
Q ss_pred cCC
Q 002990 237 VVP 239 (860)
Q Consensus 237 A~p 239 (860)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 13
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=99.55 E-value=2.5e-14 Score=160.50 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=83.7
Q ss_pred CCeEEEEc---------CCCcccCCHHHHHHHHHHHhhhccC--CCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCC
Q 002990 567 SNLRFCIS---------PTAFFQVNTLAAEKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMN 632 (860)
Q Consensus 567 ~gl~f~is---------p~sFFQvN~~~ae~L~~~i~~~~~l--~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis 632 (860)
+|.+|.+. ...|||.|......++..++..+.. .++.+|||+|||+|.+++.+|+.. ++|++||++
T Consensus 7 ~g~~~~v~~~~~~~~~~~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~ 86 (392)
T 3axs_A 7 GIAKIIVPEIPKTVSSDMPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDIS 86 (392)
T ss_dssp TTEEEEECCCCSSCCTTCCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSC
T ss_pred CCEEEEEecccccccCCCCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECC
Confidence 67888883 4689999999999888766655433 467899999999999999999852 689999999
Q ss_pred HHHHHHHHHHHHHcCCCc--EEEEEccHHHHHH
Q 002990 633 ASAVSDAHRNAEINGIKN--CRFVCAKAEDVMG 663 (860)
Q Consensus 633 ~~AIe~Ar~NA~~Ngi~N--v~fi~gDae~~~~ 663 (860)
+.|++.|++|++.||+++ ++++++|+.+++.
T Consensus 87 ~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~ 119 (392)
T 3axs_A 87 SKAIEIMKENFKLNNIPEDRYEIHGMEANFFLR 119 (392)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHH
Confidence 999999999999999976 9999999988765
No 14
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.54 E-value=7.7e-14 Score=153.20 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=82.6
Q ss_pred EEEEECCeEEEEcCCCcccC--CHHHHHHHHHHHhhhcc-CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHH
Q 002990 562 IHDSISNLRFCISPTAFFQV--NTLAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638 (860)
Q Consensus 562 i~E~i~gl~f~isp~sFFQv--N~~~ae~L~~~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~ 638 (860)
+.-..+|++|.+.+..|+++ +..+.... .++.+++. ..++.+|||+|||+|.+++.+++.+.+|+|||+++.|++.
T Consensus 112 ~~i~e~g~~f~v~~~~~~~tg~f~dq~~~~-~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~ 190 (332)
T 2igt_A 112 WPLSLLGVEFLGRFTAFRHVGVFPEQIVHW-EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGW 190 (332)
T ss_dssp EEEEETTEEEEEECCSSSCCSCCGGGHHHH-HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred eEEEECCEEEEEecCccccceechHHHHHH-HHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 33444899999999999987 55444431 22222222 3456799999999999999999987799999999999999
Q ss_pred HHHHHHHcCCCc--EEEEEccHHHHHHHH
Q 002990 639 AHRNAEINGIKN--CRFVCAKAEDVMGSL 665 (860)
Q Consensus 639 Ar~NA~~Ngi~N--v~fi~gDae~~~~~l 665 (860)
|++|++.|++.+ ++|+++|+.+++..+
T Consensus 191 a~~n~~~~gl~~~~v~~i~~D~~~~l~~~ 219 (332)
T 2igt_A 191 AKENQVLAGLEQAPIRWICEDAMKFIQRE 219 (332)
T ss_dssp HHHHHHHHTCTTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHcCCCccceEEEECcHHHHHHHH
Confidence 999999999975 999999999887654
No 15
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.54 E-value=1.5e-14 Score=152.02 Aligned_cols=139 Identities=20% Similarity=0.267 Sum_probs=89.1
Q ss_pred cccccccccCCCCCCCCCCCCcCccccCCCCCCCCCcchHHHHHhhhhcccchhhhhhhhhHHhhhhccccCCCCCC-CC
Q 002990 84 SLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMTEAVVDGDGDG-DQ 162 (860)
Q Consensus 84 ~lc~~~~~~g~c~~g~~C~~ahg~~elr~~p~~~~~~~ser~k~~~k~e~~Ek~~~~e~~~~~~~~~~~~~~~d~~~-~~ 162 (860)
.+|.||.+ |.|.+|+.|.|.|.. |+.+...+..-....-++--.+.. .+...+-.+-+ ..
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~l------------Pt~~d~~~~~~~~~~~D~fGr~k~------~~~~d~~~g~gs~~ 131 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHI------------PDEEDIGKLALRTEVLDCFGREKF------ADYREDMGGIGSFR 131 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSC------------CCHHHHHHHHHHCSSBCTTSSBCG------GGTC---------C
T ss_pred eEcCcccc-CCCCCCCCCCccCCC------------CCccchhhhcccccCcccccchhc------ccchhcccCcCccc
Confidence 49999988 999999999999952 222222211100000000000000 00000000011 13
Q ss_pred CccccEEEeCCCccc---------CHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCcc-----
Q 002990 163 DVELSKCLVHLPRKW---------HSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI----- 227 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~---------~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~----- 227 (860)
...-+|||+|||..+ ++++|+++|+++ .|..+++. +++|||||+|.+.++|++|++.|||..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~--~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV--ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE--GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE--CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 345679999999998 699999999999 44444443 5789999999999999999999999999
Q ss_pred -------CCceeEEEecCCCCcc
Q 002990 228 -------GNKTLKVANVVPRSFD 243 (860)
Q Consensus 228 -------kGr~L~V~~A~pk~~~ 243 (860)
.|+.|.|..|.+.+.+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876554
No 16
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=149.45 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHH--hhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 002990 581 VNTLAAEKLYSLG--GDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655 (860)
Q Consensus 581 vN~~~ae~L~~~i--~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~ 655 (860)
.|+.....++..+ ++.+.+.++.+|||+|||+|.+++.|++.. .+|+|||+++.|++.+.++++.+ .|++|++
T Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~ 132 (233)
T 2ipx_A 55 WNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVI 132 (233)
T ss_dssp CCTTTCHHHHHHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEEC
T ss_pred ecccchhHHHHHHhHHheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEE
Confidence 4544555555444 445567788999999999999999999873 79999999999999999999987 6899999
Q ss_pred ccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccccc
Q 002990 656 AKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQK 735 (860)
Q Consensus 656 gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 735 (860)
+|+.+... +. ..
T Consensus 133 ~d~~~~~~--~~-~~----------------------------------------------------------------- 144 (233)
T 2ipx_A 133 EDARHPHK--YR-ML----------------------------------------------------------------- 144 (233)
T ss_dssp SCTTCGGG--GG-GG-----------------------------------------------------------------
T ss_pred cccCChhh--hc-cc-----------------------------------------------------------------
Confidence 99754210 00 00
Q ss_pred ccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCchh----------hHHHHHHhcCCCCCccc
Q 002990 736 DCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPET----------LVANAIELCTPSPDKIE 805 (860)
Q Consensus 736 ~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~t----------l~rD~~~L~~p~~~~~~ 805 (860)
.-..|+|++|+|.......++..+....++..++||+|.+.+ +.+++ .+..
T Consensus 145 -----------~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~l~------- 205 (233)
T 2ipx_A 145 -----------IAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEV-KKMQ------- 205 (233)
T ss_dssp -----------CCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHH-HTTG-------
T ss_pred -----------CCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHH-HHHH-------
Confidence 002389999999433333446655555678999999999865 44553 2220
Q ss_pred ccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCce
Q 002990 806 KNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHC 852 (860)
Q Consensus 806 ~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~Hv 852 (860)
..+|+++....+|+||+|+++
T Consensus 206 --------------------------~~Gf~~~~~~~~~~~~~~~~~ 226 (233)
T 2ipx_A 206 --------------------------QENMKPQEQLTLEPYERDHAV 226 (233)
T ss_dssp --------------------------GGTEEEEEEEECTTTSSSEEE
T ss_pred --------------------------HCCCceEEEEecCCccCCcEE
Confidence 135889999999999998664
No 17
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=99.51 E-value=1.6e-13 Score=153.26 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=81.2
Q ss_pred CCeEEEEcC-------CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHH
Q 002990 567 SNLRFCISP-------TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVS 637 (860)
Q Consensus 567 ~gl~f~isp-------~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe 637 (860)
++.+|.+.. ..|||.+....+.+...++... .+.+|||+|||+|.+++.+|+. ..+|+++|+++.+++
T Consensus 9 g~~~~~~p~~~~~~~~~~F~np~~~~nr~l~~~~l~~~---~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~ 85 (378)
T 2dul_A 9 GKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNIL---NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYE 85 (378)
T ss_dssp TTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHH---CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHH
T ss_pred CcEEEEecCccccCCCCceeCCchHHHHHHHHHHHHHc---CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence 677888865 7999998888887766565553 5789999999999999999987 358999999999999
Q ss_pred HHHHHHHHc---------------CCCcEEEEEccHHHHHHH
Q 002990 638 DAHRNAEIN---------------GIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 638 ~Ar~NA~~N---------------gi~Nv~fi~gDae~~~~~ 664 (860)
.|++|++.| |+.+++++++|+.+++..
T Consensus 86 ~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 86 LMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp HHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 999999999 998899999999887643
No 18
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=99.50 E-value=1e-14 Score=157.69 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=61.4
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 579 FQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
|-.+....+.+ .+.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++|+..+++.|++|+++|+
T Consensus 24 fl~~~~i~~~i----~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~ 99 (299)
T 2h1r_A 24 LLKNPGILDKI----IYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDA 99 (299)
T ss_dssp EECCHHHHHHH----HHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----C
T ss_pred eecCHHHHHHH----HHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECch
Confidence 33455555444 44456677889999999999999999999899999999999999999999988988999999885
Q ss_pred H
Q 002990 659 E 659 (860)
Q Consensus 659 e 659 (860)
.
T Consensus 100 ~ 100 (299)
T 2h1r_A 100 I 100 (299)
T ss_dssp C
T ss_pred h
Confidence 3
No 19
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.49 E-value=4.6e-13 Score=133.49 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHH
Q 002990 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 567 ~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~ 645 (860)
.|..|.+.+..|.+......+.++..+..+.. .++.+|||+|||+|.+++.++... .+|+|||+++.|++.|++|++.
T Consensus 11 ~g~~l~~~~~~~rp~~~~~~~~l~~~l~~~~~-~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 89 (189)
T 3p9n_A 11 GGRRIAVPPRGTRPTTDRVRESLFNIVTARRD-LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEA 89 (189)
T ss_dssp TTCEEECCSCCC---CHHHHHHHHHHHHHHSC-CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHH
T ss_pred CCcEecCCCCCCccCcHHHHHHHHHHHHhccC-CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 46778888888888888888888888776543 357799999999999999777664 6899999999999999999999
Q ss_pred cCCCcEEEEEccHHHHHH
Q 002990 646 NGIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 646 Ngi~Nv~fi~gDae~~~~ 663 (860)
+++.+++|+++|+.+++.
T Consensus 90 ~~~~~v~~~~~d~~~~~~ 107 (189)
T 3p9n_A 90 LGLSGATLRRGAVAAVVA 107 (189)
T ss_dssp HTCSCEEEEESCHHHHHH
T ss_pred cCCCceEEEEccHHHHHh
Confidence 999999999999988654
No 20
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.49 E-value=5.5e-14 Score=145.12 Aligned_cols=147 Identities=16% Similarity=0.290 Sum_probs=112.9
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCcccccc
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~ 678 (860)
.+.+|||||||+|.+++.+|+.. ..|+|||+++.+++.|++|++.+++.|+.|+++|+.++++..+..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~---------- 103 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPD---------- 103 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCT----------
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCC----------
Confidence 56789999999999999999875 579999999999999999999999999999999999876643211
Q ss_pred ccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEE---
Q 002990 679 HASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIV--- 755 (860)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~Iv--- 755 (860)
..| |+|++
T Consensus 104 -------------------------------------------------------------------~~~--d~v~~~~~ 114 (218)
T 3dxy_A 104 -------------------------------------------------------------------NSL--RMVQLFFP 114 (218)
T ss_dssp -------------------------------------------------------------------TCE--EEEEEESC
T ss_pred -------------------------------------------------------------------CCh--heEEEeCC
Confidence 012 34444
Q ss_pred cC-CCCCC------cHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhcCCCCCcccccccccCcccccccccccccccc
Q 002990 756 DP-PRGGL------HPTVIKILRTHARLQRLVYISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKS 828 (860)
Q Consensus 756 DP-PR~Gl------~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~ 828 (860)
|| |+.+- .+.+++.+.+..++..++||+|+..++++++.+++. ...+
T Consensus 115 ~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~----------~~~~---------------- 168 (218)
T 3dxy_A 115 DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMS----------SIDG---------------- 168 (218)
T ss_dssp CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH----------TSTT----------------
T ss_pred CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH----------hCCC----------------
Confidence 66 44443 246889887777899999999999999999887652 0112
Q ss_pred CCCCCCccceeeeeeccCCCCCceeEEEEEeC
Q 002990 829 MPISKPFQPVKAMAVDLFPHTSHCEMVMLLER 860 (860)
Q Consensus 829 ~~~~~pf~~~k~~~vDmFPhT~HvE~V~lLeR 860 (860)
...+...|+|++++|.+.+..|||
T Consensus 169 --------~~~~~~~~~~~~~~~~~~~t~fE~ 192 (218)
T 3dxy_A 169 --------YKNLSESNDYVPRPASRPVTKFEQ 192 (218)
T ss_dssp --------EEECCTTSSCBCCCTTSCCCTTCC
T ss_pred --------cccccCcCccCCCCCCCCCcHHHH
Confidence 223344788999999887776654
No 21
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.49 E-value=6.5e-14 Score=142.12 Aligned_cols=121 Identities=23% Similarity=0.328 Sum_probs=95.3
Q ss_pred HHHHHHhhhccCC-CCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 002990 588 KLYSLGGDWADLG-PDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (860)
Q Consensus 588 ~L~~~i~~~~~l~-~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l 665 (860)
.++..+.+++... ++.+|||+|||+|.+++.++... .+|+|||+++.|++.|++|++.+++.+++|+++|+.+++...
T Consensus 40 ~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~ 119 (202)
T 2fpo_A 40 RVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK 119 (202)
T ss_dssp HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC
T ss_pred HHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhc
Confidence 3333444443322 56799999999999999876664 699999999999999999999999989999999988753210
Q ss_pred hhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCC
Q 002990 666 LKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLA 745 (860)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (860)
.
T Consensus 120 -----~-------------------------------------------------------------------------- 120 (202)
T 2fpo_A 120 -----G-------------------------------------------------------------------------- 120 (202)
T ss_dssp -----C--------------------------------------------------------------------------
T ss_pred -----C--------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCccEEEEcCC-CCCCcHHHHHHHHhc--cCCCeEEEEecCchhh
Q 002990 746 QPFKNVVAIVDPP-RGGLHPTVIKILRTH--ARLQRLVYISCNPETL 789 (860)
Q Consensus 746 ~~~~~dv~IvDPP-R~Gl~~~vi~~lr~~--~~~~rlVYVSCnp~tl 789 (860)
. ..|+||+||| +.+....+++.|... .++..++||+|++.+.
T Consensus 121 ~--~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~ 165 (202)
T 2fpo_A 121 T--PHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENG 165 (202)
T ss_dssp C--CEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC
T ss_pred C--CCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCcc
Confidence 0 2389999999 888888899988652 5688999999998764
No 22
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=4.6e-14 Score=131.59 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=70.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc--ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG--ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~--v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
.....+|||+|||+.+++++|+++|+++| |..+.+..++++|||||+|.+.|+|++||+.|||..++|+.|+|..|..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 44568999999999999999999999997 5666665567899999999999999999999999999999999998854
Q ss_pred C
Q 002990 240 R 240 (860)
Q Consensus 240 k 240 (860)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 23
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.47 E-value=3.5e-14 Score=126.08 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=63.0
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc---ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADHG---ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~~---v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
++|||+|||+.+++++|+++|+++| |...++.. ++++|||||+|.+.++|++||+.|||..|.|+.|+|..|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999998 55555544 4678999999999999999999999999999999999987
Q ss_pred CCC
Q 002990 239 PRS 241 (860)
Q Consensus 239 pk~ 241 (860)
|.+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 24
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.46 E-value=6.2e-13 Score=129.71 Aligned_cols=92 Identities=25% Similarity=0.486 Sum_probs=79.9
Q ss_pred eEEEEcCCCcccCC--HHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc
Q 002990 569 LRFCISPTAFFQVN--TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 569 l~f~isp~sFFQvN--~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~N 646 (860)
++|.+++..|+|.+ ....+.+...+...+.+.++.+|||+|||+|.+++.+++...+|+|+|+++.+++.|++|+..+
T Consensus 1 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~ 80 (183)
T 2yxd_A 1 MKYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF 80 (183)
T ss_dssp ---CCCSTTSCCBTTBCCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCccCCchheeeccCCCcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 35788999999988 5556666677777777778889999999999999999998889999999999999999999999
Q ss_pred CCCcEEEEEccHHH
Q 002990 647 GIKNCRFVCAKAED 660 (860)
Q Consensus 647 gi~Nv~fi~gDae~ 660 (860)
++.+++++++|+.+
T Consensus 81 ~~~~~~~~~~d~~~ 94 (183)
T 2yxd_A 81 NIKNCQIIKGRAED 94 (183)
T ss_dssp TCCSEEEEESCHHH
T ss_pred CCCcEEEEECCccc
Confidence 99899999999876
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.45 E-value=1.5e-13 Score=127.80 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=67.5
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~ 241 (860)
.+|||+|||+.+++++|+++|+++ .|..+++.. .+++|||||+|.+.|+|++||+.|||+.+.|+.|+|..|.++.
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 479999999999999999999999 455555554 4568999999999999999999999999999999999997754
No 26
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.45 E-value=3.6e-13 Score=135.30 Aligned_cols=126 Identities=15% Similarity=0.114 Sum_probs=96.4
Q ss_pred CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 002990 577 AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655 (860)
Q Consensus 577 sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~ 655 (860)
.+|+.+...+..++..+... ...++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+. +++|++
T Consensus 28 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~ 101 (200)
T 1ne2_A 28 EQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMV 101 (200)
T ss_dssp --CCCCHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEE
T ss_pred eecCCCHHHHHHHHHHHHhc-CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEE
Confidence 56788888888888766544 45567899999999999999999874 589999999999999999976 689999
Q ss_pred ccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccccc
Q 002990 656 AKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQK 735 (860)
Q Consensus 656 gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 735 (860)
+|+.++ +
T Consensus 102 ~d~~~~-~------------------------------------------------------------------------ 108 (200)
T 1ne2_A 102 ADVSEI-S------------------------------------------------------------------------ 108 (200)
T ss_dssp CCGGGC-C------------------------------------------------------------------------
T ss_pred CcHHHC-C------------------------------------------------------------------------
Confidence 986541 0
Q ss_pred ccccCCCCCCCCCCccEEEEcCC----CCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHh
Q 002990 736 DCTSEGNSLAQPFKNVVAIVDPP----RGGLHPTVIKILRTHARLQRLVYISCNPETLVANAIEL 796 (860)
Q Consensus 736 ~~~~~~~~~~~~~~~dv~IvDPP----R~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L 796 (860)
. ..|+||+||| +.|....+++.+.+.. .+||++|+|.++.+....+
T Consensus 109 ----------~--~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~~~~~ 158 (200)
T 1ne2_A 109 ----------G--KYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGNAKARDFLRREF 158 (200)
T ss_dssp ----------C--CEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEEGGGHHHHHHHH
T ss_pred ----------C--CeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEcCchHHHHHHHH
Confidence 0 1389999999 7788878888876653 7899999999876654433
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=123.93 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=65.5
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc--ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHH-cCCccCCceeEEEecCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHG--ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEEL-EGISIGNKTLKVANVVP 239 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~--v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~L-nG~~~kGr~L~V~~A~p 239 (860)
.|||+|||+.+++++|+++|+++| |..+++.+ ++++|||||+|.+.|+|++||+.| ||..++|++|+|..|.|
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 599999999999999999999997 44444443 578899999999999999999988 56789999999999987
Q ss_pred CCc
Q 002990 240 RSF 242 (860)
Q Consensus 240 k~~ 242 (860)
++.
T Consensus 83 ~~~ 85 (91)
T 2lxi_A 83 KPK 85 (91)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 28
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.6e-13 Score=120.97 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=70.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.....+|||+|||+.+++++|+++|+++|.....+...+++|||||+|.+.++|++||+.|||..+.|+.|+|..|+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3345689999999999999999999999554455566788999999999999999999999999999999999999775
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.43 E-value=3.4e-13 Score=116.91 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=67.1
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
++|||+|||..+++++|+++|+++ .|....+.. ++++|||||+|.+.++|++|++.|||..+.|+.|+|..|.|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999999999999999 444455543 456899999999999999999999999999999999999876
Q ss_pred C
Q 002990 241 S 241 (860)
Q Consensus 241 ~ 241 (860)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 30
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=99.43 E-value=5.4e-13 Score=152.36 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=61.7
Q ss_pred hhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 594 ~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
..++.+.++.+|||+|||+|.+++.||.. ..+|+|+|+++.+++.+++|++++|+.|+.++++|+.++.
T Consensus 98 ~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~ 169 (456)
T 3m4x_A 98 GTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV 169 (456)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH
T ss_pred HHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh
Confidence 33446778899999999999999999976 3699999999999999999999999999999999998754
No 31
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.43 E-value=1.8e-13 Score=138.69 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=88.0
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCC--CcEEEEEccHHHHHHHHhhhhcCCccccc
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI--KNCRFVCAKAEDVMGSLLKDYLNPLREED 677 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi--~Nv~fi~gDae~~~~~l~~~~~~~~~~~~ 677 (860)
++.+|||+|||+|.+++.++... .+|+|||+++.|++.|++|++.+++ ++++|+++|+.+++..+.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~----------- 121 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ----------- 121 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-----------
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc-----------
Confidence 56799999999999999866654 6999999999999999999999999 799999999876432100
Q ss_pred cccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCC-ccEEEEc
Q 002990 678 EHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFK-NVVAIVD 756 (860)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dv~IvD 756 (860)
.-. .|+||+|
T Consensus 122 ---------------------------------------------------------------------~~~~fD~I~~~ 132 (201)
T 2ift_A 122 ---------------------------------------------------------------------NQPHFDVVFLD 132 (201)
T ss_dssp ---------------------------------------------------------------------SSCCEEEEEEC
T ss_pred ---------------------------------------------------------------------cCCCCCEEEEC
Confidence 002 3899999
Q ss_pred CC-CCCCcHHHHHHHH--hccCCCeEEEEecCchh
Q 002990 757 PP-RGGLHPTVIKILR--THARLQRLVYISCNPET 788 (860)
Q Consensus 757 PP-R~Gl~~~vi~~lr--~~~~~~rlVYVSCnp~t 788 (860)
|| +.+....+++.+. +..++..++|++|++.+
T Consensus 133 ~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 133 PPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 99 7676778888884 34568899999999977
No 32
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.43 E-value=7e-14 Score=151.74 Aligned_cols=163 Identities=17% Similarity=0.165 Sum_probs=124.0
Q ss_pred EEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCC
Q 002990 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGI 648 (860)
Q Consensus 572 ~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~---~VigVEis~~AIe~Ar~NA~~Ngi 648 (860)
.+.+.+|||.+. ...++..+.+.+.+.++.+|||+|||+|.+++.+++.+. +|+|||+++.+++.|++|++.+|+
T Consensus 48 ~l~~~~f~q~~~--~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~ 125 (317)
T 1dl5_A 48 SYDDGEEYSTSS--QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI 125 (317)
T ss_dssp EEECSSCEEEEC--CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cccCCCcceecc--CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 567788999875 344556666777788899999999999999999998754 499999999999999999999999
Q ss_pred CcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC
Q 002990 649 KNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKE 728 (860)
Q Consensus 649 ~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 728 (860)
.+++|+.+|+.+.+.. .
T Consensus 126 ~~v~~~~~d~~~~~~~---~------------------------------------------------------------ 142 (317)
T 1dl5_A 126 ENVIFVCGDGYYGVPE---F------------------------------------------------------------ 142 (317)
T ss_dssp CSEEEEESCGGGCCGG---G------------------------------------------------------------
T ss_pred CCeEEEECChhhcccc---C------------------------------------------------------------
Confidence 9999999997542110 0
Q ss_pred CccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCchh-hHHHHHHhcCCCCCccccc
Q 002990 729 PQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPET-LVANAIELCTPSPDKIEKN 807 (860)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~t-l~rD~~~L~~p~~~~~~~~ 807 (860)
. ..|+||++++...+...+.+ ..++..+++|+|++.+ ..+++..+.
T Consensus 143 -----------------~--~fD~Iv~~~~~~~~~~~~~~----~LkpgG~lvi~~~~~~~~~~~~~~~~---------- 189 (317)
T 1dl5_A 143 -----------------S--PYDVIFVTVGVDEVPETWFT----QLKEGGRVIVPINLKLSRRQPAFLFK---------- 189 (317)
T ss_dssp -----------------C--CEEEEEECSBBSCCCHHHHH----HEEEEEEEEEEBCBGGGTBCEEEEEE----------
T ss_pred -----------------C--CeEEEEEcCCHHHHHHHHHH----hcCCCcEEEEEECCCCcccceEEEEE----------
Confidence 0 23899999999888754433 3457899999999875 112211111
Q ss_pred ccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeE
Q 002990 808 KDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEM 854 (860)
Q Consensus 808 k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~ 854 (860)
+ .+.+|....+.++++||.++|++.
T Consensus 190 -----------------~-----~~~~~~~~~i~~~~~~p~~~~~~~ 214 (317)
T 1dl5_A 190 -----------------K-----KDPYLVGNYKLETRFITAGGNLGN 214 (317)
T ss_dssp -----------------E-----ETTEEEEEEEEECCCCBCCGGGSC
T ss_pred -----------------E-----eCCcEEEEEeccEEEEEccCcccc
Confidence 0 023588899999999999999875
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=118.21 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=66.2
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.+..+|||+|||..+++++|+++|+++ .|....+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 345689999999999999999999999 455555543 356899999999999999999999999999999999999
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
++++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
No 34
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.43 E-value=1.3e-12 Score=126.51 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=112.7
Q ss_pred CCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc
Q 002990 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 567 ~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~N 646 (860)
.+..|.+++. +........+.++..+... +.++.+|||+|||+|.+++.+++.+..|+|||+++.+++.|++|+..+
T Consensus 10 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~ 86 (171)
T 1ws6_A 10 RGVALKVPAS-ARPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT 86 (171)
T ss_dssp TTCEECCCTT-CCCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCeEecCCCC-CCCCHHHHHHHHHHHHHhh--ccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 4677877888 6666666666666655432 225679999999999999999998878999999999999999999999
Q ss_pred CCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC
Q 002990 647 GIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSG 726 (860)
Q Consensus 647 gi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 726 (860)
++ +++|+++|+.+.+..+....
T Consensus 87 ~~-~~~~~~~d~~~~~~~~~~~~--------------------------------------------------------- 108 (171)
T 1ws6_A 87 GL-GARVVALPVEVFLPEAKAQG--------------------------------------------------------- 108 (171)
T ss_dssp TC-CCEEECSCHHHHHHHHHHTT---------------------------------------------------------
T ss_pred CC-ceEEEeccHHHHHHhhhccC---------------------------------------------------------
Confidence 98 99999999988665432100
Q ss_pred CCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHH--hccCCCeEEEEecCchhhHH
Q 002990 727 KEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILR--THARLQRLVYISCNPETLVA 791 (860)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr--~~~~~~rlVYVSCnp~tl~r 791 (860)
. ..|+|++|||..+..+.+++.+. ...++..+++++|++....+
T Consensus 109 -------------------~--~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~~ 154 (171)
T 1ws6_A 109 -------------------E--RFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYLP 154 (171)
T ss_dssp -------------------C--CEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCCT
T ss_pred -------------------C--ceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCCc
Confidence 0 23899999998666678888887 66678899999999876544
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.43 E-value=3.6e-13 Score=124.89 Aligned_cols=79 Identities=15% Similarity=0.054 Sum_probs=69.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+++.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4556789999999999999999999999 455555554 57789999999999999999999999999999999998
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
|..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8543
No 36
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.42 E-value=7.1e-13 Score=158.95 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=109.9
Q ss_pred EECCeEEEEcCCCcccCCHHHHHHHH-HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH
Q 002990 565 SISNLRFCISPTAFFQVNTLAAEKLY-SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 565 ~i~gl~f~isp~sFFQvN~~~ae~L~-~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~N 642 (860)
.-.|++|.+.+..++++....-.... ..+..+ .++.+|||+|||+|.+++.+++.. .+|++||+|+.|++.|++|
T Consensus 505 ~E~g~~~~v~~~~~~~tG~f~d~r~~r~~l~~~---~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N 581 (703)
T 3v97_A 505 TEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQM---SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERN 581 (703)
T ss_dssp EETTEEEEECSSSSSSCSCCGGGHHHHHHHHHH---CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH
T ss_pred EECCEEEEEeccccccCCCcccHHHHHHHHHHh---cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 34899999998765554322222211 122222 357899999999999999999765 5799999999999999999
Q ss_pred HHHcCCC--cEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCC
Q 002990 643 AEINGIK--NCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSN 720 (860)
Q Consensus 643 A~~Ngi~--Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 720 (860)
++.||+. +++|+++|+.+++...-
T Consensus 582 ~~~ngl~~~~v~~i~~D~~~~l~~~~------------------------------------------------------ 607 (703)
T 3v97_A 582 LRLNGLTGRAHRLIQADCLAWLREAN------------------------------------------------------ 607 (703)
T ss_dssp HHHTTCCSTTEEEEESCHHHHHHHCC------------------------------------------------------
T ss_pred HHHcCCCccceEEEecCHHHHHHhcC------------------------------------------------------
Confidence 9999997 79999999988764310
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCc-------------HHHHHHHHhccCCCeEEEEecCch
Q 002990 721 CPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLH-------------PTVIKILRTHARLQRLVYISCNPE 787 (860)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~-------------~~vi~~lr~~~~~~rlVYVSCnp~ 787 (860)
. ..|+||+|||..+.+ ..+++.+..+.++..++|+||++.
T Consensus 608 -------------------------~--~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 608 -------------------------E--QFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp -------------------------C--CEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred -------------------------C--CccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 0 238999999975532 234555545567899999999998
Q ss_pred hhHHHHHHhc
Q 002990 788 TLVANAIELC 797 (860)
Q Consensus 788 tl~rD~~~L~ 797 (860)
++..|...|.
T Consensus 661 ~~~~~~~~l~ 670 (703)
T 3v97_A 661 GFRMDLDGLA 670 (703)
T ss_dssp TCCCCHHHHH
T ss_pred ccccCHHHHH
Confidence 8888866553
No 37
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=9.9e-13 Score=118.73 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=70.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..|+|+.|+|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4556789999999999999999999999 555555554 35789999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|+++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 977654
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.3e-12 Score=118.31 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=70.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+.. ..++|||||+|.+.++|++|++.|||..+.|+.|+|..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 4456789999999999999999999999 455555554 3468999999999999999999999999999999999998
Q ss_pred CCCc
Q 002990 239 PRSF 242 (860)
Q Consensus 239 pk~~ 242 (860)
++..
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7644
No 39
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.41 E-value=1.3e-12 Score=140.27 Aligned_cols=95 Identities=21% Similarity=0.275 Sum_probs=83.3
Q ss_pred EEECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHH
Q 002990 564 DSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 564 E~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~N 642 (860)
..+.|+.|.+++..|+ +...++.|+..+.+++...++.+|||+|||+|.+++.+++. ..+|+|||+++.|++.|++|
T Consensus 88 ~~f~~~~~~v~~~~li--pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n 165 (284)
T 1nv8_A 88 KEFMGLSFLVEEGVFV--PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN 165 (284)
T ss_dssp EEETTEEEECCTTSCC--CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH
T ss_pred eEECCeEEEeCCCcee--cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 3568999999999996 55677888888887765556679999999999999999998 67999999999999999999
Q ss_pred HHHcCCCc-EEEEEccHHH
Q 002990 643 AEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 643 A~~Ngi~N-v~fi~gDae~ 660 (860)
++.+++.+ ++|+++|+.+
T Consensus 166 ~~~~~l~~~v~~~~~D~~~ 184 (284)
T 1nv8_A 166 AERHGVSDRFFVRKGEFLE 184 (284)
T ss_dssp HHHTTCTTSEEEEESSTTG
T ss_pred HHHcCCCCceEEEECcchh
Confidence 99999975 9999999765
No 40
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.41 E-value=3.7e-13 Score=132.23 Aligned_cols=153 Identities=15% Similarity=0.104 Sum_probs=111.6
Q ss_pred HHHHHhhhcc-CCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHHHHH
Q 002990 589 LYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVMGSL 665 (860)
Q Consensus 589 L~~~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~~~~~l 665 (860)
+...+.+++. ..++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|++.+++. ++.|+++|+.+.+..+
T Consensus 18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 97 (177)
T 2esr_A 18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL 97 (177)
T ss_dssp CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh
Confidence 3444444443 4567899999999999999999874 69999999999999999999999985 7999999998764321
Q ss_pred hhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCC
Q 002990 666 LKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLA 745 (860)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (860)
.
T Consensus 98 ~------------------------------------------------------------------------------- 98 (177)
T 2esr_A 98 T------------------------------------------------------------------------------- 98 (177)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCccEEEEcCCC-CCCcHHHHHHHH--hccCCCeEEEEecCchhhHHHHHHhcCCCCCcccccccccCcccccccccc
Q 002990 746 QPFKNVVAIVDPPR-GGLHPTVIKILR--THARLQRLVYISCNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLA 822 (860)
Q Consensus 746 ~~~~~dv~IvDPPR-~Gl~~~vi~~lr--~~~~~~rlVYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~ 822 (860)
. ..|+|++|||. .+....+++.+. ...++..+++++|++...... + ..+|..+.
T Consensus 99 ~--~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~~~---~-------------~~~~~~~~----- 155 (177)
T 2esr_A 99 G--RFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPK---E-------------IATLGIWK----- 155 (177)
T ss_dssp S--CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCS---E-------------ETTEEEEE-----
T ss_pred C--CCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcccccc---c-------------cCceEEEE-----
Confidence 0 13899999996 255567777775 555788999999988653221 1 12343111
Q ss_pred ccccccCCCCCCccceeeeeeccCCCCCce
Q 002990 823 RHRAKSMPISKPFQPVKAMAVDLFPHTSHC 852 (860)
Q Consensus 823 ~~r~k~~~~~~pf~~~k~~~vDmFPhT~Hv 852 (860)
. .-|--..+...-.|+||+|-
T Consensus 156 -~--------~~yg~~~~~~~~~~~~~~~~ 176 (177)
T 2esr_A 156 -E--------KIYGISKVTVYVNEGHHHHH 176 (177)
T ss_dssp -E--------EEETTEEEEEEEETTCCCCC
T ss_pred -e--------eecCcEEEEEEEeccccccC
Confidence 1 12556677888899999983
No 41
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.6e-12 Score=117.80 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=70.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ..++|||||+|.+.++|++||+.|||..|+|+.|+|..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4556789999999999999999999999 455555554 3468999999999999999999999999999999999998
Q ss_pred CCCc
Q 002990 239 PRSF 242 (860)
Q Consensus 239 pk~~ 242 (860)
++..
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7644
No 42
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=116.86 Aligned_cols=80 Identities=20% Similarity=0.254 Sum_probs=69.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..|+|+.|+|..|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 345689999999999999999999999 455555544 456899999999999999999999999999999999999
Q ss_pred CCCCc
Q 002990 238 VPRSF 242 (860)
Q Consensus 238 ~pk~~ 242 (860)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77543
No 43
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7.4e-13 Score=117.26 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=69.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
....+|||+|||+.+++++|+++|+++.|..+.+.. ++++|||||+|.++++|++||+ |||..++|+.|+|..|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 446789999999999999999999999776666655 4678999999999999999999 999999999999999977
Q ss_pred CC
Q 002990 240 RS 241 (860)
Q Consensus 240 k~ 241 (860)
++
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 44
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.6e-13 Score=118.56 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=68.9
Q ss_pred CccccEEEeCCCcccCHHHHH----HHhhhcc-ceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 163 DVELSKCLVHLPRKWHSDNLK----KFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lk----k~l~~~~-v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
....+|||+|||+.+++++|+ ++|+++| |..+.+.. +.++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999 9999995 66666554 23389999999999999999999999999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|++++
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97764
No 45
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.40 E-value=5.7e-13 Score=137.39 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=110.8
Q ss_pred hhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcC
Q 002990 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671 (860)
Q Consensus 594 ~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~ 671 (860)
++.+.+.++.+|||+|||+|++++.|++.+ .+|+|||+++.|++.|+.|++.+ .|+.++.+|+.+.. .+..
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~-----~~~~ 139 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQ-----EYAN 139 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGG-----GGTT
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcc-----cccc
Confidence 555667788899999999999999999986 79999999999999999998866 78999999875411 0100
Q ss_pred CccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCcc
Q 002990 672 PLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNV 751 (860)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 751 (860)
+ . ...|
T Consensus 140 -------------------------------------------------------------~------------~-~~~D 145 (230)
T 1fbn_A 140 -------------------------------------------------------------I------------V-EKVD 145 (230)
T ss_dssp -------------------------------------------------------------T------------S-CCEE
T ss_pred -------------------------------------------------------------c------------C-ccEE
Confidence 0 0 0237
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCCeEEEE----ecCchh------hHHHHHHhcCCCCCcccccccccCccccccccc
Q 002990 752 VAIVDPPRGGLHPTVIKILRTHARLQRLVYI----SCNPET------LVANAIELCTPSPDKIEKNKDNRGWRNMSSAGL 821 (860)
Q Consensus 752 v~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYV----SCnp~t------l~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~ 821 (860)
+|+.|+|+.+....+++.+....++..++|| +|++.+ +.+++..|. .
T Consensus 146 ~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~~l~------------~----------- 202 (230)
T 1fbn_A 146 VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILE------------A----------- 202 (230)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHH------------H-----------
T ss_pred EEEEecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHHHHH------------H-----------
Confidence 8999999999888888888776788999999 677665 445555331 1
Q ss_pred cccccccCCCCCCccceeeeeeccCCCCCceeEEEE
Q 002990 822 ARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVML 857 (860)
Q Consensus 822 ~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~l 857 (860)
.+|.++.+..+++| +..|.=.|+.
T Consensus 203 -----------~Gf~~~~~~~~~~~-~~~~~~v~~~ 226 (230)
T 1fbn_A 203 -----------GGFKIVDEVDIEPF-EKDHVMFVGI 226 (230)
T ss_dssp -----------HTEEEEEEEECTTT-STTEEEEEEE
T ss_pred -----------CCCEEEEEEccCCC-ccceEEEEEE
Confidence 24778888888777 4566655543
No 46
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.40 E-value=4.3e-13 Score=121.50 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=63.8
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc---ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCc----cCCceeEEE
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHG---ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGIS----IGNKTLKVA 235 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~---v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~----~kGr~L~V~ 235 (860)
+|||+|||+.+++++|+++|++|| +..+++.+ ++++|||||+|.+.++|++||+.|||.. +.||+|+|.
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~ 90 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVD 90 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEE
Confidence 599999999999999999999996 33444433 5789999999999999999999999974 889999999
Q ss_pred ecCC
Q 002990 236 NVVP 239 (860)
Q Consensus 236 ~A~p 239 (860)
.|+.
T Consensus 91 ~Aks 94 (95)
T 2lkz_A 91 FAKS 94 (95)
T ss_dssp ECCC
T ss_pred EccC
Confidence 8853
No 47
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=1.4e-12 Score=117.19 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3445689999999999999999999999 444455443 45789999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987644
No 48
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.40 E-value=7.8e-13 Score=141.99 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=81.8
Q ss_pred cccccceEEE-EECCeEEEEcC--CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEe
Q 002990 555 NDVVEARIHD-SISNLRFCISP--TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIE 630 (860)
Q Consensus 555 ~~~G~~~i~E-~i~gl~f~isp--~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVE 630 (860)
.++|.+..+. .-.|+.|.+.+ ..|++.|.....++.+. ..++.+|||+|||+|.+++.+|+++ .+|+|+|
T Consensus 82 ~L~G~~~~~~~~E~G~~~~~D~~k~~f~~~~~~er~ri~~~------~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD 155 (278)
T 3k6r_A 82 LLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKV------AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIE 155 (278)
T ss_dssp EEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHH------CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEEC
T ss_pred EEecCCcEEEEEECCEEEEEeccceEEcCCcHHHHHHHHHh------cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEE
Confidence 3456655543 33788888887 57888888777665543 3568899999999999999999886 6999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 631 MNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 631 is~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
+|+.|++.|++|++.||+.+ |+++++|+.+
T Consensus 156 ~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~ 186 (278)
T 3k6r_A 156 KDPYTFKFLVENIHLNKVEDRMSAYNMDNRD 186 (278)
T ss_dssp CCHHHHHHHHHHHHHTTCTTTEEEECSCTTT
T ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEeCcHHH
Confidence 99999999999999999964 9999999754
No 49
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=8.2e-13 Score=121.69 Aligned_cols=81 Identities=20% Similarity=0.359 Sum_probs=70.5
Q ss_pred CCCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 161 DQDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 161 ~~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
......+|||+|||..+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34556789999999999999999999999 455555544 356899999999999999999999999999999999999
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
+++.
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8764
No 50
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=8.5e-13 Score=119.69 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=71.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..+..+|||+|||+.+++++|+++|++++|..+.+.+ ++++|||||+|.+.++|++|| .|||..++|+.|+|..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4456789999999999999999999999877777665 356899999999999999999 89999999999999999
Q ss_pred CCCCc
Q 002990 238 VPRSF 242 (860)
Q Consensus 238 ~pk~~ 242 (860)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 77543
No 51
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.39 E-value=1.6e-12 Score=120.10 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=70.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4556789999999999999999999999 455555543 45689999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|.++..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987644
No 52
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=121.36 Aligned_cols=81 Identities=27% Similarity=0.312 Sum_probs=70.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
+...+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..|+|+.|+|..|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 345689999999999999999999999 455555554 4678999999999999999999999999999999999998
Q ss_pred CCCcc
Q 002990 239 PRSFD 243 (860)
Q Consensus 239 pk~~~ 243 (860)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 53
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=6.3e-13 Score=118.75 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=68.9
Q ss_pred CCCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 161 DQDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 161 ~~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
...+..+|||+|||+.+++++|+++|++++ |... ...++++|||||+|.+.++|++|++.|||..+.|+.|+|..|.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 345667899999999999999999999983 3333 23367889999999999999999999999999999999999976
Q ss_pred CC
Q 002990 240 RS 241 (860)
Q Consensus 240 k~ 241 (860)
+.
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=117.72 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=70.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4556789999999999999999999999 454455543 4678999999999999999999999999999999999998
Q ss_pred CCCc
Q 002990 239 PRSF 242 (860)
Q Consensus 239 pk~~ 242 (860)
++..
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7643
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.1e-12 Score=116.90 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=68.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeE-Eeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYK-SAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~-~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.+..+|||+|||+.+++++|+++|+++| |... .+.. ++++|||||+|.++++|++||+.|||..+.|+.|+|..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999994 4334 4443 46789999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 977643
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.38 E-value=1.1e-12 Score=116.17 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.+ ++++|||||+|.+.++|++||+.|||..++|+.|+|..|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3456789999999999999999999999 455555554 4578999999999999999999999999999999999987
Q ss_pred CCC
Q 002990 239 PRS 241 (860)
Q Consensus 239 pk~ 241 (860)
++.
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.38 E-value=3.5e-13 Score=122.30 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=67.6
Q ss_pred ccccEEEeCCCc------ccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCC-ce
Q 002990 164 VELSKCLVHLPR------KWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN-KT 231 (860)
Q Consensus 164 ~~~ki~VgnLP~------~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG-r~ 231 (860)
....|||+|||+ .+++++|+++|+++| |..+.+.+ ++++|||||+|.++++|++||+.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 345799999999 999999999999994 55555543 5678999999999999999999999999999 99
Q ss_pred eEEEecCCC
Q 002990 232 LKVANVVPR 240 (860)
Q Consensus 232 L~V~~A~pk 240 (860)
|+|..|.|+
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.8e-12 Score=118.75 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=69.3
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
....+|||+|||+.+++++|+++|+++ .|..+.++. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 345689999999999999999999999 455555554 567899999999999999999999999999999999998765
Q ss_pred C
Q 002990 241 S 241 (860)
Q Consensus 241 ~ 241 (860)
.
T Consensus 100 ~ 100 (109)
T 1x4a_A 100 R 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.38 E-value=1.3e-12 Score=117.02 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=68.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||..+++++|+++|+++| |....+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 45799999999999999999999994 44455543 45689999999999999999999999999999999999987
Q ss_pred CCc
Q 002990 240 RSF 242 (860)
Q Consensus 240 k~~ 242 (860)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 644
No 60
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.38 E-value=1.3e-12 Score=117.93 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=67.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEe----eccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSA----KKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~i----k~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.....+|||+|||+.+++++|+++|++++.....+ ..++++|||||+|.+.++|++||+ |||..+.|+.|+|..|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 44567899999999999999999999994221111 226789999999999999999999 9999999999999999
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
+++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7753
No 61
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.38 E-value=8.3e-13 Score=118.15 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=64.3
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
...+|||+||++.+++++|+++|.++ .|... ....++|||||+|.++++|++||+.|||..+.||+|+|..|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~--~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSF--HPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEE--EEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEE--EEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 35689999999999999999999999 34333 33458999999999999999999999999999999999888
No 62
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1e-12 Score=117.73 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=69.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec-------cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~-------~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V 234 (860)
.+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 345689999999999999999999999 455555553 156799999999999999999999999999999999
Q ss_pred EecCCCCc
Q 002990 235 ANVVPRSF 242 (860)
Q Consensus 235 ~~A~pk~~ 242 (860)
..|+++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976543
No 63
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.38 E-value=1.5e-12 Score=120.34 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=70.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++ .|..+++.. ++++|||||+|.+.++|++||+.|||..|.|+.|+|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3445689999999999999999999999 465565554 45679999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|+++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987643
No 64
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=121.01 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=69.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||..+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3445789999999999999999999999 444455543 35689999999999999999999999999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|+++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 65
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.4e-12 Score=120.02 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=69.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcccee---------EEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILY---------KSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIG 228 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~---------~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k 228 (860)
.....+|||+|||+.+++++|+++|++++... +.+.. ++++|||||+|.+.++|++||+.|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45567899999999999999999999995443 44443 467899999999999999999999999999
Q ss_pred CceeEEEecCCCC
Q 002990 229 NKTLKVANVVPRS 241 (860)
Q Consensus 229 Gr~L~V~~A~pk~ 241 (860)
|+.|+|..|+++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999997753
No 66
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.5e-12 Score=117.87 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=70.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.+ ++++|||||+|.+.++|++||+.|||..|+|+.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4556789999999999999999999999 455555544 35689999999999999999999999999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|+++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97764
No 67
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.38 E-value=2.2e-12 Score=117.10 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=69.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCC---ceeEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGN---KTLKV 234 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG---r~L~V 234 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 3456789999999999999999999999 455555554 3558999999999999999999999999998 99999
Q ss_pred EecCCCCc
Q 002990 235 ANVVPRSF 242 (860)
Q Consensus 235 ~~A~pk~~ 242 (860)
..|+++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99977543
No 68
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.9e-12 Score=117.42 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..|.|+.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4556789999999999999999999999 444455444 45789999999999999999999999999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|.++.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 97753
No 69
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=117.79 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=70.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..|.|+.|+|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4456789999999999999999999999 555555543 46789999999999999999999999999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|.++.
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97753
No 70
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=116.97 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=69.2
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.+..+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3456899999999999999999999994 55555554 4567999999999999999999999999999999999998
Q ss_pred CCC
Q 002990 239 PRS 241 (860)
Q Consensus 239 pk~ 241 (860)
|++
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 71
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=118.24 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=67.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccce-eEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGIL-YKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~-~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
..+..+|||+|||+.+++++|+++|++++-. ......++++|||||+|.++++|++||+.|||..+.|+.|+|..|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 4456789999999999999999999998432 111112577899999999999999999999999999999999999876
Q ss_pred C
Q 002990 241 S 241 (860)
Q Consensus 241 ~ 241 (860)
.
T Consensus 92 ~ 92 (101)
T 2fc9_A 92 G 92 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 72
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.37 E-value=1.1e-12 Score=115.74 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=66.8
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
...+|||+|||+.+++++|+++|+++.|....+. +++|||||+|.++++|++||+.|||..++|++|+|..|...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4568999999999999999999999955555543 78899999999999999999999999999999999988544
No 73
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.5e-12 Score=115.66 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=69.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+ |||..++|+.|+|..
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3445689999999999999999999999 455555543 4578999999999999999999 999999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987643
No 74
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.3e-12 Score=118.71 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeec-----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++||..+.+.. ++++|||||+|.+.++|++|| .|||..++|+.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3456789999999999999999999999966666554 356899999999999999999 9999999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987643
No 75
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=117.93 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=67.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..+..+|||+|||+.+++++|+++|+.+ +. +.+.. ++++|||||+|.++++|++||+.|||..+.|+.|+|..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-~~-~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS-VR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC-SE-EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC-eE-EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4456789999999999999999999987 22 22222 466899999999999999999999999999999999999
Q ss_pred CCCCc
Q 002990 238 VPRSF 242 (860)
Q Consensus 238 ~pk~~ 242 (860)
+|+..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87643
No 76
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=113.70 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=66.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeecc-----CCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKK-----KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~-----r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
..+|||+|||+.+++++|+++|+++| |....+... +++|||||+|.+.++|++|++.|||..++|+.|+|..|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 45799999999999999999999994 544554442 278999999999999999999999999999999999886
Q ss_pred CC
Q 002990 239 PR 240 (860)
Q Consensus 239 pk 240 (860)
|.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 77
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.36 E-value=3.4e-12 Score=143.33 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=75.6
Q ss_pred EEEEECCeEEEEcCCC-----cccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHH
Q 002990 562 IHDSISNLRFCISPTA-----FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV 636 (860)
Q Consensus 562 i~E~i~gl~f~isp~s-----FFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AI 636 (860)
+.-.-.|++|.+.+.. ||......... +..++ .++.+|||+|||+|.+++.+|+.+..|+|||+|+.|+
T Consensus 176 ~~v~E~g~~f~vd~~~~~~tG~f~dqr~~r~~----l~~~~--~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al 249 (393)
T 4dmg_A 176 LEVEEDGLRFPIPLALAQKTGYYLDQRENRRL----FEAMV--RPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEAL 249 (393)
T ss_dssp EEEEETTEEEEEETTTCCTTSSCGGGHHHHHH----HHTTC--CTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEECCEEEEEechhccccCcCCCHHHHHHH----HHHHh--cCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHH
Confidence 3334489999999865 66655444322 22332 3578999999999999999999887799999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 637 SDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 637 e~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
+.|++|++.||+.+ .+.++|+.+++..
T Consensus 250 ~~a~~n~~~ng~~~-~~~~~D~~~~l~~ 276 (393)
T 4dmg_A 250 GVLDQAALRLGLRV-DIRHGEALPTLRG 276 (393)
T ss_dssp HHHHHHHHHHTCCC-EEEESCHHHHHHT
T ss_pred HHHHHHHHHhCCCC-cEEEccHHHHHHH
Confidence 99999999999973 5779999886543
No 78
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.9e-12 Score=117.73 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=68.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 345679999999999999999999999 455555544 456899999999999999999999999999999999998
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
.+++
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7653
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=121.08 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=67.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcC--CccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG--ISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG--~~~kGr~L~V~~A~ 238 (860)
..+..+|||+|||+.+++++|+++|++|| |..+.+. +.+|||||+|.+.++|++||+.|+| ..+.||+|+|..|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~--~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML--KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 44567899999999999999999999994 4444444 4589999999999999999999974 78999999999997
Q ss_pred CCCc
Q 002990 239 PRSF 242 (860)
Q Consensus 239 pk~~ 242 (860)
++..
T Consensus 91 ~~~~ 94 (105)
T 1sjq_A 91 HKEL 94 (105)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7543
No 80
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.5e-12 Score=114.27 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=67.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4556789999999999999999999999 455555543 46689999999999999999999999999999999988
Q ss_pred cC
Q 002990 237 VV 238 (860)
Q Consensus 237 A~ 238 (860)
|+
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 81
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.36 E-value=1.8e-12 Score=112.83 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=65.9
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.+..+|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4566899999999999999999999994 44444432 457899999999999999999999999999999999877
Q ss_pred C
Q 002990 238 V 238 (860)
Q Consensus 238 ~ 238 (860)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 82
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=4.4e-12 Score=115.33 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=69.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec-----cCCcceEEEEeCCHHHHHHHHHHH-cCCccCCceeEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEEL-EGISIGNKTLKV 234 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~-----~r~~gFgFVtF~s~Eea~kAIe~L-nG~~~kGr~L~V 234 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+.+ ++++|||||+|.+.++|++||+.| ||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4556789999999999999999999999 444445432 356899999999999999999999 999999999999
Q ss_pred EecCCCCc
Q 002990 235 ANVVPRSF 242 (860)
Q Consensus 235 ~~A~pk~~ 242 (860)
..|.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987643
No 83
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=3.7e-12 Score=116.53 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=70.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHc------CCccCCc
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELE------GISIGNK 230 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~Ln------G~~~kGr 230 (860)
..+..+|||+|||+.+++++|+++|.++| |..+.+.. ++++|||||+|.+.++|++||+.|| |..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 44567899999999999999999999994 55555553 3678999999999999999999999 9999999
Q ss_pred eeEEEecCCCCc
Q 002990 231 TLKVANVVPRSF 242 (860)
Q Consensus 231 ~L~V~~A~pk~~ 242 (860)
.|+|..|.++..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987643
No 84
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.35 E-value=2.2e-12 Score=118.15 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=69.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3445689999999999999999999999 455555543 45689999999999999999999999999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|.+++
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 87653
No 85
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.35 E-value=2e-12 Score=121.25 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=70.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..|.|+.|+|..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44467899999999999999999999994 55455543 45689999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 002990 237 VVPRSFD 243 (860)
Q Consensus 237 A~pk~~~ 243 (860)
|.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9776544
No 86
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-12 Score=116.74 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=68.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3446789999999999999999999999 455555544 45789999999999999999999999999999999999
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
|+++
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 9764
No 87
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.1e-12 Score=117.03 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=70.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhh-cc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCc-cCCceeEEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLAD-HG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGIS-IGNKTLKVA 235 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~-~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~-~kGr~L~V~ 235 (860)
..+..+|||+|||+.+++++|+++|++ +| |..+.+.. ++++|||||+|.+.++|++||+.|||.. +.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 445678999999999999999999999 84 65555554 4678999999999999999999999999 999999999
Q ss_pred ecCCCCc
Q 002990 236 NVVPRSF 242 (860)
Q Consensus 236 ~A~pk~~ 242 (860)
.|.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9977643
No 88
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=2e-12 Score=116.33 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=67.7
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
..+..+|||+|||+.+++++|+++|+++| |..+ ...+++|||||+|.+.++|++|++.|||..+.|+.|+|..|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v--~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV--FIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEE--EEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEE--EEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 44556899999999999999999999994 4333 34466899999999999999999999999999999999999765
Q ss_pred C
Q 002990 241 S 241 (860)
Q Consensus 241 ~ 241 (860)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 3
No 89
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5e-12 Score=113.77 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=67.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
..+..+|||+|||+.+++++|+++|++++ .....++ ..+|||||+|.+.++|++||+.|||..++|+.|+|..|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE--ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE--EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 44566899999999999999999999993 2223333 34789999999999999999999999999999999999876
Q ss_pred Cc
Q 002990 241 SF 242 (860)
Q Consensus 241 ~~ 242 (860)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 90
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=121.91 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=68.8
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~ 241 (860)
..+|||+|||+.+++++|++||+++.|..+.+.+ ++++|||||+|.++++|++|| .|||..++||.|+|..|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~ 94 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQ 94 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccc
Confidence 4689999999999999999999999777676665 578899999999999999999 799999999999999887654
Q ss_pred c
Q 002990 242 F 242 (860)
Q Consensus 242 ~ 242 (860)
.
T Consensus 95 ~ 95 (109)
T 2dnn_A 95 W 95 (109)
T ss_dssp H
T ss_pred h
Confidence 4
No 91
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.9e-12 Score=113.76 Aligned_cols=77 Identities=13% Similarity=0.252 Sum_probs=67.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++|++.|||..+.|+.|+|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4456789999999999999999999999 455555544 45689999999999999999999999999999999987
Q ss_pred cC
Q 002990 237 VV 238 (860)
Q Consensus 237 A~ 238 (860)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 92
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=99.35 E-value=4e-12 Score=145.46 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=60.2
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
.++.+.++.+|||+|||+|.+++.||... ..|+|+|+++.+++.|++|++.+|+. +.++++|+.++.
T Consensus 95 ~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~ 164 (464)
T 3m6w_A 95 VLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA 164 (464)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH
T ss_pred HhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh
Confidence 34467788999999999999999999763 58999999999999999999999998 999999998753
No 93
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-12 Score=115.97 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=65.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-cee--------EEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILY--------KSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~--------~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
.+...|||+|||+.+++++|+++|+++| |.. ..+.. ++++|||||+|.+.++|++||+.|||..++|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4467899999999999999999999994 333 44443 4668999999999999999999999999999
Q ss_pred ceeEEEecC
Q 002990 230 KTLKVANVV 238 (860)
Q Consensus 230 r~L~V~~A~ 238 (860)
+.|+|..|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999998773
No 94
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.9e-12 Score=118.14 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=69.7
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccc-----eeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGI-----LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v-----~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++|. ....+..++++|||||+|.+.++|++||+.|||..+.|+.|+|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345678999999999999999999999943 234444578899999999999999999999999999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 97754
No 95
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.35 E-value=9.7e-13 Score=129.50 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=67.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc---ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG---ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~---v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
....+|||+|||+.+++++|+++|+++| |..+++.. ++++|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3457899999999999999999999998 55555543 5678999999999999999999999999999999999
Q ss_pred ecCCC
Q 002990 236 NVVPR 240 (860)
Q Consensus 236 ~A~pk 240 (860)
.|.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99765
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4e-12 Score=112.42 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=66.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
..+..+|||+|||+.+++++|+++|+++| |..+.+. +|||||+|.+.++|++|++.|||..+.|+.|+|..|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 34456899999999999999999999994 4444433 689999999999999999999999999999999999765
Q ss_pred C
Q 002990 241 S 241 (860)
Q Consensus 241 ~ 241 (860)
.
T Consensus 81 ~ 81 (90)
T 2dnq_A 81 S 81 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 97
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.34 E-value=3.9e-12 Score=115.59 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=69.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCcc---CCceeE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISI---GNKTLK 233 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~---kGr~L~ 233 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4556789999999999999999999999 466666554 45789999999999999999999999998 899999
Q ss_pred EEecCCCC
Q 002990 234 VANVVPRS 241 (860)
Q Consensus 234 V~~A~pk~ 241 (860)
|..|.++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997653
No 98
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=2.4e-12 Score=118.06 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=67.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCC-----ceeEEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN-----KTLKVA 235 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG-----r~L~V~ 235 (860)
.....+|||+|||+.+++++|+++|.+++ |..+.+.+. |||||+|.+.++|++||+.|||+.+.| +.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 34468999999999999999999999994 544444433 999999999999999999999999999 999999
Q ss_pred ecCCCC
Q 002990 236 NVVPRS 241 (860)
Q Consensus 236 ~A~pk~ 241 (860)
.|+++.
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998864
No 99
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=4.2e-12 Score=113.87 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=67.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccC--CceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG--NKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k--Gr~L~V~~A~ 238 (860)
..+..+|||+|||+.+++++|+++|++++ |..+ ...+.+|||||+|.+.++|++|++.|||..+. |+.|+|..|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI--DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEE--EECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE--EEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 44557899999999999999999999995 3333 33345899999999999999999999999999 9999999998
Q ss_pred CCC
Q 002990 239 PRS 241 (860)
Q Consensus 239 pk~ 241 (860)
+++
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 100
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.34 E-value=3.3e-12 Score=117.04 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=67.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCc--cCCceeEEEecCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGIS--IGNKTLKVANVVP 239 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~--~kGr~L~V~~A~p 239 (860)
..+.-.|||+|||..+++++|+++|++||-. ..++..++||||||+|.+.++|.+||+.|||.. +.||+|+|..|++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V-~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPI-SYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCE-EEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 4556679999999999999999999999532 333444578999999999999999999999986 7899999999976
Q ss_pred CC
Q 002990 240 RS 241 (860)
Q Consensus 240 k~ 241 (860)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 101
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.34 E-value=5.6e-12 Score=128.32 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=63.8
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
...+...+.+.++.+|||+|||+|.+++.+++...+|+|||+++.+++.|++|++.+|+. +++++++|+.+
T Consensus 44 ~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 115 (204)
T 3njr_A 44 RALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA 115 (204)
T ss_dssp HHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred HHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence 344556667788899999999999999999999899999999999999999999999998 99999999765
No 102
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.34 E-value=5.9e-12 Score=114.24 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=67.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
..+..+|||+|||+.+++++|+++|++++ |..+.+. ++||||+|.+.++|++||+.|||..+.|+.|+|..|.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 34456899999999999999999999994 4433332 579999999999999999999999999999999999876
Q ss_pred Ccc
Q 002990 241 SFD 243 (860)
Q Consensus 241 ~~~ 243 (860)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 103
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=3.1e-12 Score=115.37 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=66.3
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~ 242 (860)
+|||+|||+.+++++|+++|+++ .|..+.+... ++|||||+|.+.++|++|++.|||..+.|+.|+|..|++++.
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 69999999999999999999999 4444444434 789999999999999999999999999999999999987653
No 104
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.33 E-value=1.7e-12 Score=131.99 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=94.7
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCcccccc
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~ 678 (860)
++.+|||||||+|.+++.+++.. .+|+|||+++.+++.|++|+..+++.|+.|+++|+.++ ...+..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~---------- 109 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL-TDYFED---------- 109 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG-GGTSCT----------
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH-HhhcCC----------
Confidence 56789999999999999999884 69999999999999999999999999999999997641 110000
Q ss_pred ccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCC
Q 002990 679 HASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPP 758 (860)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPP 758 (860)
. ..|+|++++|
T Consensus 110 -------------------------------------------------------------------~--~~D~i~~~~~ 120 (214)
T 1yzh_A 110 -------------------------------------------------------------------G--EIDRLYLNFS 120 (214)
T ss_dssp -------------------------------------------------------------------T--CCSEEEEESC
T ss_pred -------------------------------------------------------------------C--CCCEEEEECC
Confidence 0 1267788777
Q ss_pred C----------CCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhc
Q 002990 759 R----------GGLHPTVIKILRTHARLQRLVYISCNPETLVANAIELC 797 (860)
Q Consensus 759 R----------~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~ 797 (860)
- ......+++.+....++..++|++|+...++.++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 169 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSF 169 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Confidence 3 34557899999887889999999999988888887765
No 105
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.2e-12 Score=116.44 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=66.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
...+|||+|||..+++++|+++|+++| |...++ .+++|||||+|.+.++|++||+.|||..|+|+.|+|..|++|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~--~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKH--YPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEE--ecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 346899999999999999999999994 444443 377899999999999999999999999999999999988764
No 106
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=118.79 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=67.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeec-----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++||..+.+.+ ++++|||||+|.+.++|++|| .|||..++|+.|+|..
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3446789999999999999999999999966666543 346899999999999999999 9999999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|+++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 97753
No 107
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.7e-12 Score=119.58 Aligned_cols=79 Identities=9% Similarity=0.054 Sum_probs=67.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcC--CccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG--ISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG--~~~kGr~L~V~~A~ 238 (860)
..+.-.|||+|||+.+++++|+++|++| .|..+.+. +.+|||||+|++.++|++||+.||| ..+.|++|+|..|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~--~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML--KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE--GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 4456679999999999999999999999 45545544 3489999999999999999999984 68999999999997
Q ss_pred CCCc
Q 002990 239 PRSF 242 (860)
Q Consensus 239 pk~~ 242 (860)
++..
T Consensus 106 ~k~~ 109 (119)
T 2ad9_A 106 HKEL 109 (119)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7644
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.1e-12 Score=116.45 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=67.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~ 242 (860)
....+|||+|||..+++++|+++|+++|- ...+...+.+|||||+|.+.++|++||+.|||..|.|+.|+|..|.+++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQ-IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 44568999999999999999999999952 23333334589999999999999999999999999999999999987654
No 109
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2e-12 Score=115.83 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccce-eEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGIL-YKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~-~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|.+++.. ...+.. ++++|||||+|.++++|++||+.|||..|.|+.|+|..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3445789999999999999999999999432 222222 46789999999999999999999999999999999998
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
|.++
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=3.4e-12 Score=117.26 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=66.5
Q ss_pred CCccccEEEeCCCc-ccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCC--ccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGI--SIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~-~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~--~~kGr~L~V~~A 237 (860)
.++..+|||+|||+ .+++++|+.+|++|| |..+.+ .+.+|||||+|.++++|++||+.|||. .+.||+|+|..|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI--LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE--CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE--EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 44567899999999 999999999999994 444444 356799999999999999999999975 499999999999
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
+++.
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 7653
No 111
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.7e-12 Score=119.77 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=68.6
Q ss_pred CccccEEEeCCCcccCHHHHH---HHhhhcc-ceeEEeecc-------CCcceEEEEeCCHHHHHHHHHHHcCCccCCce
Q 002990 163 DVELSKCLVHLPRKWHSDNLK---KFLADHG-ILYKSAKKK-------KGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lk---k~l~~~~-v~~~~ik~~-------r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~ 231 (860)
....+|||+|||+.+++++|+ ++|+++| |..+.+.+. +++|||||+|.++|+|++||+.|||+.+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 335689999999999999999 9999994 555555541 45699999999999999999999999999999
Q ss_pred eEEEecCCCC
Q 002990 232 LKVANVVPRS 241 (860)
Q Consensus 232 L~V~~A~pk~ 241 (860)
|+|..|.+++
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 112
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.33 E-value=2.6e-12 Score=114.82 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=68.9
Q ss_pred CccccEEEeCCCcccCHHHHH----HHhhhcc-ceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 163 DVELSKCLVHLPRKWHSDNLK----KFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lk----k~l~~~~-v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.+..+|||+|||+.+++++|+ .+|+++| |....+.. ++++|||||+|.+.++|++|++.|||..+.|+.|+|..
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456689999999999999999 9999994 44444433 46789999999999999999999999999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|.+++.
T Consensus 86 a~~~~~ 91 (97)
T 1nu4_A 86 AKTDSD 91 (97)
T ss_dssp CSSCCT
T ss_pred ccCCCc
Confidence 987644
No 113
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.32 E-value=3e-12 Score=125.99 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCccc-CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHH
Q 002990 567 SNLRFCISPTAFFQ-VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 567 ~gl~f~isp~sFFQ-vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~ 644 (860)
.|.+|.+.+..... ......+.++..+. ...++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+.
T Consensus 12 ~~~~~~~~~~~~~rp~~~~~~~~~~~~l~---~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 88 (187)
T 2fhp_A 12 GGRRLKALDGDNTRPTTDKVKESIFNMIG---PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA 88 (187)
T ss_dssp TTCBCCCCCCCSSCCCCHHHHHHHHHHHC---SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH
T ss_pred cCccccCCCCCCcCcCHHHHHHHHHHHHH---hhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH
Confidence 34556656554333 22333333333332 23467899999999999999988765 699999999999999999999
Q ss_pred HcCC-CcEEEEEccHHHHHHHH
Q 002990 645 INGI-KNCRFVCAKAEDVMGSL 665 (860)
Q Consensus 645 ~Ngi-~Nv~fi~gDae~~~~~l 665 (860)
.+++ .+++|+++|+.+.+..+
T Consensus 89 ~~~~~~~~~~~~~d~~~~~~~~ 110 (187)
T 2fhp_A 89 ITKEPEKFEVRKMDANRALEQF 110 (187)
T ss_dssp HHTCGGGEEEEESCHHHHHHHH
T ss_pred HhCCCcceEEEECcHHHHHHHH
Confidence 9998 58999999998876543
No 114
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.32 E-value=2.1e-12 Score=110.11 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=61.4
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
+|||+|||+.+++++|+++|+++ .|....+.. ++++|||||+|.++++|++|++ |||..++|+.|+|..|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999 444444443 4678999999999999999998 9999999999999764
No 115
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=3.3e-12 Score=113.49 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=66.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccc--eeEEeeccCCcceEEEEeCCHHHHHHHHHHHcC-CccCCceeEEEecCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGI--LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG-ISIGNKTLKVANVVP 239 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v--~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG-~~~kGr~L~V~~A~p 239 (860)
....+|||+|||+.+++++|+++|+++|. ....+ .++|||||+|.+.++|++||+.||| ..++|+.|+|..|++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 34468999999999999999999999954 33332 4579999999999999999999999 999999999999987
Q ss_pred CC
Q 002990 240 RS 241 (860)
Q Consensus 240 k~ 241 (860)
+.
T Consensus 83 ~~ 84 (93)
T 2cqh_A 83 KK 84 (93)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 116
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-12 Score=121.55 Aligned_cols=82 Identities=12% Similarity=0.188 Sum_probs=69.5
Q ss_pred CCccccEEEeCCCcccCHHHHH----HHhhhcc-ceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLK----KFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lk----k~l~~~~-v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
..+..+|||+|||+.+++++|+ .+|++|| |..+.+.+ ++++|||||+|.+.++|++||+.|||..+.|+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3456689999999999999987 5889995 44444443 5789999999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 002990 236 NVVPRSFD 243 (860)
Q Consensus 236 ~A~pk~~~ 243 (860)
.|+++...
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99876543
No 117
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.1e-12 Score=116.82 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=68.8
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
...+|||+|||+.+++++|+++|+++ .|....+.. ++++|||||+|.+.++|++|++.|||..|.|+.|+|..|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34579999999999999999999999 455555553 4568999999999999999999999999999999999997
Q ss_pred CCCc
Q 002990 239 PRSF 242 (860)
Q Consensus 239 pk~~ 242 (860)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7644
No 118
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.32 E-value=2.7e-11 Score=127.21 Aligned_cols=87 Identities=22% Similarity=0.383 Sum_probs=68.8
Q ss_pred eEEEEcCCCcccCCHHHHHHHHHHHhhhccCC-CCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHc
Q 002990 569 LRFCISPTAFFQVNTLAAEKLYSLGGDWADLG-PDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 569 l~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~-~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~N 646 (860)
+.+.- +...|...+... .+..++.+. ++.+|||+|||+|.+++.+++... +|+|||+++.+++.|++|+..+
T Consensus 22 ~~i~q-~~~~~~~~~d~~-----ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~ 95 (259)
T 3lpm_A 22 LRIIQ-SPSVFSFSIDAV-----LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN 95 (259)
T ss_dssp EEEEE-BTTTBCCCHHHH-----HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHT
T ss_pred EEEEe-CCCCccCcHHHH-----HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC
Confidence 44433 344455555532 234455667 788999999999999999998865 9999999999999999999999
Q ss_pred CCC-cEEEEEccHHHH
Q 002990 647 GIK-NCRFVCAKAEDV 661 (860)
Q Consensus 647 gi~-Nv~fi~gDae~~ 661 (860)
++. +++|+++|+.++
T Consensus 96 ~~~~~v~~~~~D~~~~ 111 (259)
T 3lpm_A 96 QLEDQIEIIEYDLKKI 111 (259)
T ss_dssp TCTTTEEEECSCGGGG
T ss_pred CCcccEEEEECcHHHh
Confidence 996 699999998653
No 119
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.5e-12 Score=117.50 Aligned_cols=78 Identities=9% Similarity=0.077 Sum_probs=67.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.....+|||+|||+.+++++|+++|+++++..+.+.+ ++++|||||+|.++|+|++||+ +||..++||.|+|..+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 4456789999999999999999999999866555554 4678999999999999999995 79999999999999886
Q ss_pred CC
Q 002990 239 PR 240 (860)
Q Consensus 239 pk 240 (860)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 120
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.31 E-value=4.5e-12 Score=120.64 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=69.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..++|++|+|..
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456789999999999999999999999 455555554 46789999999999999999999999999999999998
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
|.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8764
No 121
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=114.04 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=68.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..+..+|||+|||+.+++++|+++|.++ .|..+.+.. ++++|||||+|.+.++|++||+.|||+.+.|+.|+|..|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 4456789999999999999999999999 454445444 456899999999999999999999999999999999988
Q ss_pred CCC
Q 002990 238 VPR 240 (860)
Q Consensus 238 ~pk 240 (860)
.+.
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 643
No 122
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.31 E-value=6.9e-12 Score=119.62 Aligned_cols=80 Identities=26% Similarity=0.287 Sum_probs=69.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+.+ ++++|||||+|.+.++|++||+.|||..+.|+.|+|..
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3445679999999999999999999999 455555554 35689999999999999999999999999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|.++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97764
No 123
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.31 E-value=2.2e-12 Score=146.95 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=58.5
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
.++.+.++.+|||+|||+|..++.|+... .+|+|+|+++.+++.+++|++.+|+.|+.++++|+.
T Consensus 253 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~ 320 (450)
T 2yxl_A 253 IVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDAR 320 (450)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTT
T ss_pred HhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChh
Confidence 34457788999999999999999999864 699999999999999999999999999999998864
No 124
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.31 E-value=4e-12 Score=116.16 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=66.7
Q ss_pred CccccEEEeCCCccc------CHHHHHHHhhhcc-ceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCc-ee
Q 002990 163 DVELSKCLVHLPRKW------HSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNK-TL 232 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~------~~~~Lkk~l~~~~-v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr-~L 232 (860)
....+|||+|||+.+ ++++|+++|+++| |..+.+.+ ++++|||||+|.++++|++||+.|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 335689999999999 6799999999994 44455443 57789999999999999999999999999999 99
Q ss_pred EEEecCCC
Q 002990 233 KVANVVPR 240 (860)
Q Consensus 233 ~V~~A~pk 240 (860)
+|..|...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99988643
No 125
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.31 E-value=4.3e-12 Score=112.91 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=66.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.++++|++|++.|||..+.|+.|+|..|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3456789999999999999999999999 455555544 456899999999999999999999999999999999877
Q ss_pred C
Q 002990 238 V 238 (860)
Q Consensus 238 ~ 238 (860)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.31 E-value=2.4e-12 Score=114.50 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=63.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccc-eeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGI-LYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v-~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|++++. ....+.. ++++|||||+|.++++|++||+.|||..++|+.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 334578999999999999999999999943 2233332 46789999999999999999999999999999999987
Q ss_pred cC
Q 002990 237 VV 238 (860)
Q Consensus 237 A~ 238 (860)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 127
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.31 E-value=4e-12 Score=111.09 Aligned_cols=72 Identities=17% Similarity=0.353 Sum_probs=63.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc----cc------eeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH----GI------LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~----~v------~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L 232 (860)
.+..+|||+|||+.+++++|+++|+++ |+ ....+...+++|||||+|.++++|++|+ .|||..+.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 456689999999999999999999999 53 4455555677999999999999999999 999999999999
Q ss_pred EEE
Q 002990 233 KVA 235 (860)
Q Consensus 233 ~V~ 235 (860)
+|.
T Consensus 83 ~V~ 85 (87)
T 2hzc_A 83 KIR 85 (87)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 128
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.31 E-value=6.7e-13 Score=137.16 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=117.1
Q ss_pred CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEE
Q 002990 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654 (860)
Q Consensus 576 ~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi 654 (860)
..|++.+......++..+.+.+.+.++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+..+++.++.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~ 145 (235)
T 1jg1_A 66 LPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVI 145 (235)
T ss_dssp EECSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cccCCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Confidence 334444433344445555566677788899999999999999999987 8999999999999999999999999899999
Q ss_pred EccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccc
Q 002990 655 CAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQ 734 (860)
Q Consensus 655 ~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 734 (860)
.+|+.. .+ ..
T Consensus 146 ~~d~~~---~~-~~------------------------------------------------------------------ 155 (235)
T 1jg1_A 146 LGDGSK---GF-PP------------------------------------------------------------------ 155 (235)
T ss_dssp ESCGGG---CC-GG------------------------------------------------------------------
T ss_pred ECCccc---CC-CC------------------------------------------------------------------
Confidence 998611 00 00
Q ss_pred cccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhcCCCCCcccccccccCcc
Q 002990 735 KDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPETLVANAIELCTPSPDKIEKNKDNRGWR 814 (860)
Q Consensus 735 ~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~ 814 (860)
....|+||++.+...+...+.+ ..++..+++|+|++...++++..+.+ .
T Consensus 156 ------------~~~fD~Ii~~~~~~~~~~~~~~----~L~pgG~lvi~~~~~~~~~~l~~~~~----------~----- 204 (235)
T 1jg1_A 156 ------------KAPYDVIIVTAGAPKIPEPLIE----QLKIGGKLIIPVGSYHLWQELLEVRK----------T----- 204 (235)
T ss_dssp ------------GCCEEEEEECSBBSSCCHHHHH----TEEEEEEEEEEECSSSSCEEEEEEEE----------E-----
T ss_pred ------------CCCccEEEECCcHHHHHHHHHH----hcCCCcEEEEEEecCCCccEEEEEEE----------e-----
Confidence 0013799999887777654333 34578999999998766555433321 0
Q ss_pred ccccccccccccccCCCCCCccceeeeeeccCCCCCcee
Q 002990 815 NMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCE 853 (860)
Q Consensus 815 ~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE 853 (860)
+..|....+.++++||.|.|..
T Consensus 205 -----------------~~~~~~~~~~~~~f~p~~~~~~ 226 (235)
T 1jg1_A 205 -----------------KDGIKIKNHGGVAFVPLIGEYG 226 (235)
T ss_dssp -----------------TTEEEEEEEEEECCCBCBSTTS
T ss_pred -----------------CCeEEEEEeccEEEEEccCCCc
Confidence 1247788899999999999853
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=7.6e-12 Score=114.12 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=68.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcccee--EEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILY--KSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~--~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|.+++... +.+.. ++++|||||+|.++++|++||+. ||..+.||.|+|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34567899999999999999999999996543 33332 57889999999999999999998 99999999999998
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
+.++..
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 876543
No 130
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=6.8e-12 Score=116.13 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=69.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+.+ ++++|||||+|.+.++|++||+.||| .|.|+.|+|..
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4556789999999999999999999999 455555544 45789999999999999999999999 89999999999
Q ss_pred cCCCCcc
Q 002990 237 VVPRSFD 243 (860)
Q Consensus 237 A~pk~~~ 243 (860)
|.++..+
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9765443
No 131
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=99.30 E-value=5.7e-12 Score=140.20 Aligned_cols=72 Identities=28% Similarity=0.321 Sum_probs=61.7
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~--~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
.+...+..++ +.++.+|||+|||+|++++.++..+. +|+|+|+++.|++.|++|++.+|+ ++++|+++|+.+
T Consensus 205 ~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~ 279 (373)
T 3tm4_A 205 SIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ 279 (373)
T ss_dssp HHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred HHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 3333333444 56788999999999999999999876 999999999999999999999999 689999999865
No 132
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.30 E-value=4.4e-12 Score=111.36 Aligned_cols=75 Identities=9% Similarity=0.119 Sum_probs=65.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||+.+++++|+++|+++ .|....+.. ++++|||||+|.+.++|++|+ .|||..+.|+.|+|..|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 3579999999999999999999999 455555543 467899999999999999999 9999999999999998865
Q ss_pred C
Q 002990 240 R 240 (860)
Q Consensus 240 k 240 (860)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 133
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.5e-12 Score=119.25 Aligned_cols=79 Identities=10% Similarity=0.156 Sum_probs=68.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcccee--EEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILY--KSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~--~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|++++... +.+.. ++++|||||+|.++|+|++||+. ||..++|+.|+|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 45567899999999999999999999996542 45444 56889999999999999999998 99999999999999
Q ss_pred cCCCC
Q 002990 237 VVPRS 241 (860)
Q Consensus 237 A~pk~ 241 (860)
|.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 134
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=109.50 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.....+|||+|||+.+++++|+++|+++| |..+.+. ++||||+|.+.++|++|++.|||..+.|+.|+|..|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 44566899999999999999999999994 4444433 459999999999999999999999999999999999876
Q ss_pred Cc
Q 002990 241 SF 242 (860)
Q Consensus 241 ~~ 242 (860)
..
T Consensus 83 ~~ 84 (92)
T 2dgt_A 83 LR 84 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 135
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=119.23 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=68.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccc----eeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGI----LYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v----~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V 234 (860)
.....+|||+|||+.+++++|++||+++|. ..+.+.+ ++++|||||+|.+.++|++||+ |||..++||.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 455778999999999999999999999753 5555544 5788999999999999999999 9999999999999
Q ss_pred EecCCCC
Q 002990 235 ANVVPRS 241 (860)
Q Consensus 235 ~~A~pk~ 241 (860)
..|.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9887653
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.30 E-value=4.2e-12 Score=117.19 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=69.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.+..+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|.+|++.|||..+.|+.|+|..|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3456899999999999999999999994 55555544 567899999999999999999999999999999999998764
Q ss_pred C
Q 002990 241 S 241 (860)
Q Consensus 241 ~ 241 (860)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 137
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.30 E-value=4.9e-12 Score=121.53 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=67.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-cee--------EEe-eccCCcceEEEEeCCHHHHHHHHHHHcCCccCCce
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILY--------KSA-KKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~--------~~i-k~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~ 231 (860)
..+..+|||+|||+.+++++|+++|+++| |.. ..+ ..++++|||||+|.+.++|.+||+.|||+.+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34567899999999999999999999995 322 222 33788999999999999999999999999999999
Q ss_pred eEEEecCCC
Q 002990 232 LKVANVVPR 240 (860)
Q Consensus 232 L~V~~A~pk 240 (860)
|+|..|+++
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999664
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6.3e-12 Score=109.52 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHH-cCCccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEEL-EGISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~L-nG~~~kGr~L~V~~A~ 238 (860)
..+..+|||+|||..+++++|+++|+++|- ...+...+++|||||+|.+.++|++|++.| ||..+.|+.|+|..|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~-i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGE-IRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSC-EEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCC-EeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 344568999999999999999999999953 233333456899999999999999999999 9999999999998763
No 139
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.30 E-value=3.6e-12 Score=121.02 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=67.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-ccee--EEeec----cCCcceEEEEeCCHHHHHHHHHHHcCC----ccCCc
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILY--KSAKK----KKGMTVGFVKFESVEQLKNAVEELEGI----SIGNK 230 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~--~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~----~~kGr 230 (860)
....-+|||+|||+.+++++|+++|+++ .|.. +++.+ ++++|||||+|.+. +|.+||+.|||. .+.||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 3445689999999999999999999999 4433 44444 56889999999999 999999999999 99999
Q ss_pred eeEEEecCCC
Q 002990 231 TLKVANVVPR 240 (860)
Q Consensus 231 ~L~V~~A~pk 240 (860)
.|+|..|.++
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999775
No 140
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.30 E-value=5.9e-12 Score=132.49 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=110.3
Q ss_pred CCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc
Q 002990 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 567 ~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~N 646 (860)
.++.+.+.|+.||+.+...+..++-..+... +.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|+..|
T Consensus 87 ~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~ 165 (254)
T 2nxc_A 87 AEIPLVIEPGMAFGTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN 165 (254)
T ss_dssp SSEEEECCCC-----CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT
T ss_pred CceEEEECCCccccCCCCHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHc
Confidence 4577999999999998877776665444433 467789999999999999999998889999999999999999999999
Q ss_pred CCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC
Q 002990 647 GIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSG 726 (860)
Q Consensus 647 gi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 726 (860)
++. ++++++|+.+.+. .
T Consensus 166 ~~~-v~~~~~d~~~~~~----~---------------------------------------------------------- 182 (254)
T 2nxc_A 166 GVR-PRFLEGSLEAALP----F---------------------------------------------------------- 182 (254)
T ss_dssp TCC-CEEEESCHHHHGG----G----------------------------------------------------------
T ss_pred CCc-EEEEECChhhcCc----C----------------------------------------------------------
Confidence 997 9999999876311 0
Q ss_pred CCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhc
Q 002990 727 KEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPETLVANAIELC 797 (860)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~ 797 (860)
. ..|+||.+++...+ ..++..+..+.++...+++|+-......++..++
T Consensus 183 -------------------~--~fD~Vv~n~~~~~~-~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l 231 (254)
T 2nxc_A 183 -------------------G--PFDLLVANLYAELH-AALAPRYREALVPGGRALLTGILKDRAPLVREAM 231 (254)
T ss_dssp -------------------C--CEEEEEEECCHHHH-HHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred -------------------C--CCCEEEECCcHHHH-HHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHH
Confidence 0 13789999886554 4566666666678899999987766667776654
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=5.8e-12 Score=116.59 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=67.6
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~ 242 (860)
...+|||+|||+.+++++|+++|++||-. ..+...+++|||||+|.+.++|++||+.|||..++|+.|+|..|.....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSL-GRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 35579999999999999999999999532 3344456889999999999999999999999999999999999866544
No 142
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=1.1e-11 Score=113.90 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=66.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCc--cCCceeEEEecCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGIS--IGNKTLKVANVVP 239 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~--~kGr~L~V~~A~p 239 (860)
..+.-.|||+|||+.+++++|+++|++||-. ..+...+.+|||||+|.+.++|.+||+.|||.. +.|+.|+|..|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V-~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTI-CYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCE-EEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 3445679999999999999999999999532 223333568999999999999999999998754 9999999999976
Q ss_pred CCc
Q 002990 240 RSF 242 (860)
Q Consensus 240 k~~ 242 (860)
+..
T Consensus 91 ~~~ 93 (104)
T 1wex_A 91 KRI 93 (104)
T ss_dssp SSC
T ss_pred ccc
Confidence 543
No 143
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=8.8e-12 Score=113.82 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=68.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc--ceeEEee-c----cCCcceEEEEeCCHHHHHHHHHHHc--CCccCCceeEE
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG--ILYKSAK-K----KKGMTVGFVKFESVEQLKNAVEELE--GISIGNKTLKV 234 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~--v~~~~ik-~----~r~~gFgFVtF~s~Eea~kAIe~Ln--G~~~kGr~L~V 234 (860)
+..+|||+|||+.+++++|+++|.++| |..+.+. . ++++|||||+|.+.++|++||+.|| +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 456899999999999999999999993 6666655 2 3678999999999999999999996 59999999999
Q ss_pred EecCCCCc
Q 002990 235 ANVVPRSF 242 (860)
Q Consensus 235 ~~A~pk~~ 242 (860)
..|.|+..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987654
No 144
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=109.02 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=65.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
..+..+|||+|||+.+++++|+++|+++| |..+.+. ++||||+|.+.++|++||+.|||..++|+.|+|..|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 44567899999999999999999999995 4433333 459999999999999999999999999999999999775
No 145
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.29 E-value=2.1e-12 Score=124.52 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc----ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG----ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~----v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V 234 (860)
.....+|||+|||+.+++++|+++|++++ |..+.+.+ ++++|||||+|.++++|++||+ |||..++||.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34467899999999999999999999996 44555554 5778999999999999999999 9999999999999
Q ss_pred EecCCCC
Q 002990 235 ANVVPRS 241 (860)
Q Consensus 235 ~~A~pk~ 241 (860)
..|.++.
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9886543
No 146
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=112.34 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=60.5
Q ss_pred ccEEEeCCCccc------CHHHHHHHhhhcc-ceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCc-eeEEE
Q 002990 166 LSKCLVHLPRKW------HSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNK-TLKVA 235 (860)
Q Consensus 166 ~ki~VgnLP~~~------~~~~Lkk~l~~~~-v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr-~L~V~ 235 (860)
-+|||+|||+.+ ++++|+++|+++| |....+.+ ++++|||||+|.++++|++||+.|||..+.|+ +|+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 369999999999 6799999999994 44444443 57789999999999999999999999999999 99873
No 147
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=2.5e-12 Score=120.29 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=68.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc----ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG----ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~----v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
....+|||+|||+.+++++|++||++++ |..+.+.+ ++++|||||+|.++++|++||+ |||..++||.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 4467899999999999999999999995 45555554 5678999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 002990 236 NVVPRS 241 (860)
Q Consensus 236 ~A~pk~ 241 (860)
.|.++.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886543
No 148
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.3e-12 Score=113.31 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=68.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ce-eEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCce----
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-IL-YKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKT---- 231 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~-~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~---- 231 (860)
..+.-+|||+|||+.+++++|+++|+++| |. .+.+.. ++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34456899999999999999999999995 45 555554 356799999999999999999999999999999
Q ss_pred eEEEecCCC
Q 002990 232 LKVANVVPR 240 (860)
Q Consensus 232 L~V~~A~pk 240 (860)
|+|..|.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999988764
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=6e-12 Score=112.90 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=66.2
Q ss_pred CCccccEEEeCCCc-ccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 162 QDVELSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 162 ~~~~~ki~VgnLP~-~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+..+|||+|||+ .+++++|+++|+++| |..+.+ ++|||||+|.+.++|++||+.|||..+.|+.|+|..|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE----ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 34566899999998 999999999999994 544444 378999999999999999999999999999999999977
Q ss_pred CCcc
Q 002990 240 RSFD 243 (860)
Q Consensus 240 k~~~ 243 (860)
+...
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6443
No 150
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.29 E-value=8e-12 Score=113.73 Aligned_cols=77 Identities=10% Similarity=0.201 Sum_probs=67.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4556789999999999999999999999 444555543 467899999999999999999999999999999999877
Q ss_pred C
Q 002990 238 V 238 (860)
Q Consensus 238 ~ 238 (860)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 151
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.5e-11 Score=112.53 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=66.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHc--CCccCCceeEEEecCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELE--GISIGNKTLKVANVVP 239 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~Ln--G~~~kGr~L~V~~A~p 239 (860)
..+.-.|||+|||+.+++++|+++|++||-. ..+...+.+|||||+|.+.++|++||+.|+ |..+.|++|+|..|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v-~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKV-TNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCE-EEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 3455689999999999999999999999532 223333458999999999999999999885 6789999999999977
Q ss_pred CCc
Q 002990 240 RSF 242 (860)
Q Consensus 240 k~~ 242 (860)
+..
T Consensus 91 ~~~ 93 (101)
T 2cq1_A 91 KEL 93 (101)
T ss_dssp SSC
T ss_pred ccC
Confidence 644
No 152
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.29 E-value=5e-12 Score=117.22 Aligned_cols=76 Identities=21% Similarity=0.384 Sum_probs=66.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34456899999999999999999999994 55555543 46689999999999999999999999999999999987
Q ss_pred c
Q 002990 237 V 237 (860)
Q Consensus 237 A 237 (860)
|
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 153
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=6.9e-12 Score=117.54 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=68.8
Q ss_pred CccccEEE--eCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCcc-----CCceeEEE
Q 002990 163 DVELSKCL--VHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI-----GNKTLKVA 235 (860)
Q Consensus 163 ~~~~ki~V--gnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~-----kGr~L~V~ 235 (860)
.+..+||| +|||+.+++++|+++|++||. ...+....++|||||+|.+.++|++||+.|||.++ +|++|.|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~-v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGL-VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSC-EEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCC-eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 44567999 779999999999999999963 33444445789999999999999999999999998 78999999
Q ss_pred ecCCCCccc
Q 002990 236 NVVPRSFDK 244 (860)
Q Consensus 236 ~A~pk~~~k 244 (860)
.|+..+..+
T Consensus 102 ~a~~~p~~~ 110 (114)
T 2cq2_A 102 FVEKVQWSG 110 (114)
T ss_dssp EESCCCCSS
T ss_pred ecccCcccC
Confidence 998766544
No 154
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=6.7e-12 Score=115.08 Aligned_cols=75 Identities=25% Similarity=0.290 Sum_probs=65.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..-+|||+|||+.+++++|+.+|+++| |..+.+.. ++++|||||+|.++|+|++||+ +||..++|+.|.|..+.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 356799999999999999999999994 55555554 5688999999999999999999 999999999999987754
No 155
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.28 E-value=1.6e-11 Score=115.03 Aligned_cols=79 Identities=10% Similarity=0.217 Sum_probs=69.7
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..++.+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 4556789999999999999999999999 455555554 457899999999999999999999999999999999999
Q ss_pred CCC
Q 002990 238 VPR 240 (860)
Q Consensus 238 ~pk 240 (860)
.+.
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 765
No 156
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.28 E-value=6.9e-12 Score=115.56 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=67.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.+ |..+.|+.|+|..
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 3456689999999999999999999999 455555544 467899999999999999999987 5999999999999
Q ss_pred cCCCCcc
Q 002990 237 VVPRSFD 243 (860)
Q Consensus 237 A~pk~~~ 243 (860)
|.++...
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887543
No 157
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.28 E-value=9.2e-12 Score=114.75 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=66.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+. +|||||+|.+.++|++|++.|||..++|+.|+|..|+++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3445689999999999999999999999 45444444 799999999999999999999999999999999998765
Q ss_pred C
Q 002990 241 S 241 (860)
Q Consensus 241 ~ 241 (860)
+
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=6.6e-12 Score=117.34 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=67.2
Q ss_pred CCccccEEEeCCCcc-cCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcC--CccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRK-WHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG--ISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~-~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG--~~~kGr~L~V~~A 237 (860)
..+..+|||+|||+. +++++|+.+|++|| |..+.+ .+++|||||+|.+.++|++||+.||| ..+.||+|+|..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL--MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE--ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE--ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 445678999999998 99999999999994 554444 46789999999999999999999975 5699999999999
Q ss_pred CCCCc
Q 002990 238 VPRSF 242 (860)
Q Consensus 238 ~pk~~ 242 (860)
+++..
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 76543
No 159
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.28 E-value=9.4e-12 Score=132.88 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeC-CHHHHHHHHHHH-----HHcCCC-----cEE
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEM-NASAVSDAHRNA-----EINGIK-----NCR 652 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEi-s~~AIe~Ar~NA-----~~Ngi~-----Nv~ 652 (860)
.++.|...+.......++.+|||||||+|.+++.+++... +|+|+|+ ++.|++.|+.|+ +.+++. ++.
T Consensus 63 ~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~ 142 (281)
T 3bzb_A 63 GARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPK 142 (281)
T ss_dssp HHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCE
T ss_pred HHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeE
Confidence 5667777777776666788999999999999999998764 9999999 899999999999 556654 688
Q ss_pred EEEccH
Q 002990 653 FVCAKA 658 (860)
Q Consensus 653 fi~gDa 658 (860)
++..+.
T Consensus 143 ~~~~~~ 148 (281)
T 3bzb_A 143 VVPYRW 148 (281)
T ss_dssp EEECCT
T ss_pred EEEecC
Confidence 876553
No 160
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.27 E-value=1.5e-11 Score=111.02 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=65.6
Q ss_pred CCccccEEEeCCCc-ccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 162 QDVELSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 162 ~~~~~ki~VgnLP~-~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+..+|||+|||+ .+++++|+++|+++| |....+ ++|||||+|.+.++|++|++.|||..+.|+.|+|..|++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 44567899999998 999999999999994 443343 379999999999999999999999999999999998866
Q ss_pred C
Q 002990 240 R 240 (860)
Q Consensus 240 k 240 (860)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.27 E-value=2.6e-12 Score=122.43 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=67.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccce--eEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGIL--YKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~--~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|++||+++++. .+.+.+ ++++|||||+|.++|+|++||+. +|..+.||.|+|..
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 3446789999999999999999999999776 455544 57899999999999999999995 78999999999988
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8544
No 162
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=6e-12 Score=114.30 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.++++|++||+. ||..+.|+.|+|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 4456789999999999999999999999 455555554 35679999999999999999999 99999999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|.|+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987654
No 163
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.27 E-value=1.5e-11 Score=119.57 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=69.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..|.|+.|+|..
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34467899999999999999999999994 54555543 46889999999999999999999999999999999999
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
|.++
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 9765
No 164
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=99.27 E-value=7.3e-12 Score=141.10 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=71.5
Q ss_pred EcCC-CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc--CCC
Q 002990 573 ISPT-AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN--GIK 649 (860)
Q Consensus 573 isp~-sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~N--gi~ 649 (860)
+.|. +|.|........... .. +.++.+|||||||+|.+++.||+.+.+|+|||+++.|++.|+.|++.+ |+.
T Consensus 69 ~p~~~~~eQat~e~vA~~~a---~~--l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~ 143 (410)
T 3ll7_A 69 IPSRLSLEQSSGAVTSSYKS---RF--IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGK 143 (410)
T ss_dssp CCCHHHHHHSCCHHHHHHGG---GG--SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTC
T ss_pred cCCCCChhhcCHHHHHHHHH---Hh--cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCC
Confidence 3555 778877666544321 22 224789999999999999999999999999999999999999999999 998
Q ss_pred cEEEEEccHHHHHHH
Q 002990 650 NCRFVCAKAEDVMGS 664 (860)
Q Consensus 650 Nv~fi~gDae~~~~~ 664 (860)
+++|+++|+.+++..
T Consensus 144 ~i~~i~~Da~~~L~~ 158 (410)
T 3ll7_A 144 DVNILTGDFKEYLPL 158 (410)
T ss_dssp EEEEEESCGGGSHHH
T ss_pred cEEEEECcHHHhhhh
Confidence 999999999876544
No 165
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.26 E-value=2.4e-12 Score=113.63 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=63.4
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~ 241 (860)
+|||+|||..+++++|+++|+++ .|....+.. ++++|||||+|.+.+ |++|++.|||..++|+.|+|..|.++.
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 59999999999999999999999 455555554 467899999999999 999999999999999999999997653
No 166
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.5e-11 Score=109.65 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=67.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeE-EeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYK-SAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~-~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
...+|||+|||+.+++++|+++|+++| |..+ .+...+..+.|||+|.+.++|++||+.|||..++|+.|+|..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 357899999999999999999999995 5444 2444455566999999999999999999999999999999999876
No 167
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.26 E-value=4.4e-11 Score=117.39 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=79.7
Q ss_pred ceEEEEECCeEEEE-cCCCcccCCH--HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHH
Q 002990 560 ARIHDSISNLRFCI-SPTAFFQVNT--LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV 636 (860)
Q Consensus 560 ~~i~E~i~gl~f~i-sp~sFFQvN~--~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AI 636 (860)
.++.+.+.+..+.+ ....||+.+. ..++.+++ .+...++.+|||+|||+|.+++.+++...+|+|+|+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~ 87 (194)
T 1dus_A 12 KIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVE----NVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAI 87 (194)
T ss_dssp EEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHH----HCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHH
T ss_pred cEEeeecCCCceEEEeCCCcCCccccchHHHHHHH----HcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHH
Confidence 45777888888888 4567777764 45555443 44556788999999999999999999888999999999999
Q ss_pred HHHHHHHHHcCCCc--EEEEEccHH
Q 002990 637 SDAHRNAEINGIKN--CRFVCAKAE 659 (860)
Q Consensus 637 e~Ar~NA~~Ngi~N--v~fi~gDae 659 (860)
+.|++|+..+++.+ +.++++|+.
T Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~d~~ 112 (194)
T 1dus_A 88 KLAKENIKLNNLDNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHHHHTTCTTSCEEEEECSTT
T ss_pred HHHHHHHHHcCCCccceEEEECchh
Confidence 99999999999987 999999864
No 168
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.26 E-value=2.5e-12 Score=124.55 Aligned_cols=79 Identities=10% Similarity=0.086 Sum_probs=68.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.....+|||+|||+.+++++|+++|+++++..+.+.+ ++++|||||+|.++|+|++|| .|||..++||.|+|..+.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3456789999999999999999999999876666554 577899999999999999999 889999999999999887
Q ss_pred CCC
Q 002990 239 PRS 241 (860)
Q Consensus 239 pk~ 241 (860)
++.
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 169
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=117.08 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=65.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||..+++++|+++|+++ .|....+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4456789999999999999999999999 454455433 46789999999999999999999999999999999976
Q ss_pred c
Q 002990 237 V 237 (860)
Q Consensus 237 A 237 (860)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 170
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=4e-12 Score=110.98 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=63.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.+..+|||+|||+.+++++|+++|+++ .|....+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 345689999999999999999999999 455555544 46689999999999999999999999999999997653
No 171
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.9e-11 Score=112.56 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=66.5
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccC--------Cc
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIG--------NK 230 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k--------Gr 230 (860)
....+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..++ |+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 445689999999999999999999999 455555554 456899999999999999999999999994 67
Q ss_pred eeEEEecCCC
Q 002990 231 TLKVANVVPR 240 (860)
Q Consensus 231 ~L~V~~A~pk 240 (860)
.|+|..|.|+
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 7888888664
No 172
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.25 E-value=1.8e-11 Score=118.44 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=67.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.....+|||+|||+.+++++|+++|+++| |..+.+. ..++|||||+|.+.++|++||+.|||..+.|+.|+|..|.|+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA-RNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEEC-SSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEe-eCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 34456899999999999999999999994 4444433 336899999999999999999999999999999999999775
No 173
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.25 E-value=1.7e-11 Score=119.42 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=69.2
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..|.|+.|+|..|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456789999999999999999999999 555555544 456799999999999999999999999999999999999
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
.++.
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7753
No 174
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.25 E-value=1.2e-11 Score=108.42 Aligned_cols=75 Identities=9% Similarity=0.225 Sum_probs=64.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
+.+..+|||+|||+.+++++|+++|+++ .|....+.. ++++|||||+|.+.++|++|++. +|..+.|+.|+|..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 4556789999999999999999999999 455555543 45689999999999999999965 88899999999986
Q ss_pred c
Q 002990 237 V 237 (860)
Q Consensus 237 A 237 (860)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 175
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.25 E-value=1.9e-11 Score=112.19 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=65.0
Q ss_pred ccccEEEeCCCcc-cCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 164 VELSKCLVHLPRK-WHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 164 ~~~ki~VgnLP~~-~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
...+|||+|||+. +++++|+++|+++| |..+.+ ++|||||+|.+.++|++||+.|||..++|+.|+|..|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3568999999999 99999999999994 444444 6899999999999999999999999999999999999753
No 176
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.24 E-value=1.9e-11 Score=136.75 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=76.6
Q ss_pred eEEEEcCCCcccCCH-HHHHHHHHHHhhhcc--CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH
Q 002990 569 LRFCISPTAFFQVNT-LAAEKLYSLGGDWAD--LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 569 l~f~isp~sFFQvN~-~~ae~L~~~i~~~~~--l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~ 645 (860)
+.|...|+.|++.+. ...+.|.+.+...+. ..++.+|||+|||+|.+++.+++...+|+|||+++.|++.|++|+..
T Consensus 198 ~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~ 277 (381)
T 3dmg_A 198 YTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA 277 (381)
T ss_dssp EEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHH
T ss_pred EEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence 578889999999864 455666666666542 33577999999999999999999988999999999999999999999
Q ss_pred cCCCcEEEEEccHHH
Q 002990 646 NGIKNCRFVCAKAED 660 (860)
Q Consensus 646 Ngi~Nv~fi~gDae~ 660 (860)
|++. ++|+++|+.+
T Consensus 278 ~~~~-v~~~~~D~~~ 291 (381)
T 3dmg_A 278 NALK-AQALHSDVDE 291 (381)
T ss_dssp TTCC-CEEEECSTTT
T ss_pred cCCC-eEEEEcchhh
Confidence 9985 8999998643
No 177
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.24 E-value=1.9e-11 Score=121.39 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=70.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN--KTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG--r~L~V~~A~ 238 (860)
.+.-++|||+|||+.+++++|+++|++| .|..+.+..++++|||||+|.+.++|++|++.|||..+.| ++|+|..|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 3445689999999999999999999999 4555555546678999999999999999999999999955 999999998
Q ss_pred CCCcc
Q 002990 239 PRSFD 243 (860)
Q Consensus 239 pk~~~ 243 (860)
++...
T Consensus 123 ~~~l~ 127 (164)
T 1sjr_A 123 LTSLN 127 (164)
T ss_dssp SSSCC
T ss_pred CCccc
Confidence 87554
No 178
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=4.7e-12 Score=116.89 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=66.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++|| .|||..|.|+.|+|..|.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4579999999999999999999999 455555543 467899999999999999999 9999999999999998866
Q ss_pred C
Q 002990 240 R 240 (860)
Q Consensus 240 k 240 (860)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 179
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.24 E-value=1.3e-11 Score=118.18 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=68.9
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 335679999999999999999999999 455555543 467899999999999999999999999999999999999
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
+++.
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 180
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.24 E-value=3.3e-11 Score=128.23 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=61.4
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~ 663 (860)
.++.+.++.+|||+|||+|.+++.++... .+|+|+|+++.+++.+++|++.+|+.|++++++|+.++..
T Consensus 77 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~ 148 (274)
T 3ajd_A 77 IVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKD 148 (274)
T ss_dssp HHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHH
T ss_pred HHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcch
Confidence 34456788999999999999999999753 7999999999999999999999999999999999987643
No 181
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.24 E-value=1.3e-11 Score=130.97 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=102.1
Q ss_pred ECCeEEE-EcC--CCcccCCHHHHHHHHH----HHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHH
Q 002990 566 ISNLRFC-ISP--TAFFQVNTLAAEKLYS----LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASA 635 (860)
Q Consensus 566 i~gl~f~-isp--~sFFQvN~~~ae~L~~----~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~A 635 (860)
..|..|. +.| ..|++.+......++. .+..++.+.++.+|||+|||+|.+++.+++. ..+|+|+|+++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~ 147 (275)
T 1yb2_A 68 VSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDN 147 (275)
T ss_dssp ETTEEEEEECCCGGGHHHHC------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHH
T ss_pred ECCeEEEEeCCCHHHHHhhccccccccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHH
Confidence 4555443 333 5677777766666665 5666777888999999999999999999987 6899999999999
Q ss_pred HHHHHHHHHHc-CCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 002990 636 VSDAHRNAEIN-GIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPEN 714 (860)
Q Consensus 636 Ie~Ar~NA~~N-gi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (860)
++.|++|++.+ |+.+++|+++|+.+. . +
T Consensus 148 ~~~a~~~~~~~~g~~~v~~~~~d~~~~--------~-------------------------------~------------ 176 (275)
T 1yb2_A 148 LKKAMDNLSEFYDIGNVRTSRSDIADF--------I-------------------------------S------------ 176 (275)
T ss_dssp HHHHHHHHHTTSCCTTEEEECSCTTTC--------C-------------------------------C------------
T ss_pred HHHHHHHHHhcCCCCcEEEEECchhcc--------C-------------------------------c------------
Confidence 99999999999 888999999986431 0 0
Q ss_pred CccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHH
Q 002990 715 DIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPETLVANAI 794 (860)
Q Consensus 715 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~ 794 (860)
.-..|+||+|+|.. ..+++.+....++..+++++|.......++.
T Consensus 177 --------------------------------~~~fD~Vi~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 221 (275)
T 1yb2_A 177 --------------------------------DQMYDAVIADIPDP---WNHVQKIASMMKPGSVATFYLPNFDQSEKTV 221 (275)
T ss_dssp --------------------------------SCCEEEEEECCSCG---GGSHHHHHHTEEEEEEEEEEESSHHHHHHHH
T ss_pred --------------------------------CCCccEEEEcCcCH---HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 00237999999954 3567777666678888888888776666766
Q ss_pred Hhc
Q 002990 795 ELC 797 (860)
Q Consensus 795 ~L~ 797 (860)
.+.
T Consensus 222 ~~l 224 (275)
T 1yb2_A 222 LSL 224 (275)
T ss_dssp HHS
T ss_pred HHH
Confidence 654
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.24 E-value=1.4e-11 Score=114.62 Aligned_cols=74 Identities=23% Similarity=0.360 Sum_probs=61.7
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCce-----eEEEec
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT-----LKVANV 237 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~-----L~V~~A 237 (860)
...+|||+|||+.+++++|+++|+++| |..+.+.+. |||||+|.+.++|++||+.|||+.++|+. |+|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 467899999999999999999999994 444444333 99999999999999999999999999998 777777
Q ss_pred CCC
Q 002990 238 VPR 240 (860)
Q Consensus 238 ~pk 240 (860)
.++
T Consensus 92 ~~~ 94 (115)
T 3beg_B 92 GPR 94 (115)
T ss_dssp C--
T ss_pred CCC
Confidence 664
No 183
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.3e-12 Score=120.01 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=66.3
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcccee--EEee---ccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILY--KSAK---KKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~--~~ik---~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
....+|||+|||+.+++++|+++|++++... ..+. .++++|||||+|.+.++|++||+ |||..+.|+.|+|..|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3457899999999999999999999995432 2222 25778999999999999999999 9999999999999999
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 184
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.4e-11 Score=113.98 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=68.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||+.+++++|+++|.++ .|..+.+.. ++++|||||+|.+.++|++||+. ||..+.|+.|+|..|.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 4679999999999999999999999 455555554 46789999999999999999999 99999999999999987
Q ss_pred CCc
Q 002990 240 RSF 242 (860)
Q Consensus 240 k~~ 242 (860)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 643
No 185
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=3.6e-11 Score=107.86 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=65.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~ 241 (860)
..+..+|||+|| .+++++|+++|+++|- ...+...+++|||||+|.+.++|++||+.|||..++|+.|+|..|.+++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~-i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGN-IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCC-EEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 345678999996 8999999999999943 2333445788999999999999999999999999999999999997754
No 186
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=8.9e-12 Score=106.42 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=62.5
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
+|||+|||+.+++++|+++|+++ .|....+.. ++++|||||+|.++++|++|++.|| ..++|+.|+|..|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 69999999999999999999999 455555544 4678999999999999999999999 9999999999876
No 187
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.23 E-value=4.1e-11 Score=126.96 Aligned_cols=93 Identities=26% Similarity=0.264 Sum_probs=80.2
Q ss_pred EECCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHH
Q 002990 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 565 ~i~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~N 642 (860)
.+.+..|.+.+..|.+ ...++.++..+.+.+. .++.+|||+|||+|.+++.++.. ..+|+|+|+++.|++.|++|
T Consensus 76 ~f~~~~~~~~~~~~ip--r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n 152 (276)
T 2b3t_A 76 EFWSLPLFVSPATLIP--RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN 152 (276)
T ss_dssp EETTEEEECCTTSCCC--CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH
T ss_pred EECCceEEeCCCCccc--CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 4678999999999975 3447778888877765 56779999999999999999976 46999999999999999999
Q ss_pred HHHcCCCcEEEEEccHHH
Q 002990 643 AEINGIKNCRFVCAKAED 660 (860)
Q Consensus 643 A~~Ngi~Nv~fi~gDae~ 660 (860)
++.+++.++.|+++|+.+
T Consensus 153 ~~~~~~~~v~~~~~d~~~ 170 (276)
T 2b3t_A 153 AQHLAIKNIHILQSDWFS 170 (276)
T ss_dssp HHHHTCCSEEEECCSTTG
T ss_pred HHHcCCCceEEEEcchhh
Confidence 999999899999998643
No 188
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.3e-11 Score=108.29 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=67.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+ +|..+.|+.|+|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3445689999999999999999999999 455555544 4668999999999999999999 58899999999999
Q ss_pred cCCCCc
Q 002990 237 VVPRSF 242 (860)
Q Consensus 237 A~pk~~ 242 (860)
|.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987644
No 189
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.22 E-value=6.9e-12 Score=130.78 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=67.3
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc---ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG---ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~---v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
...+|||+|||+.+++++|+++|++++ |..+++.+ ++++|||||+|.+.++|++||+.|||+.|.|+.|+|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 345799999999999999999999998 55555544 46789999999999999999999999999999999999
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
|++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 190
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.22 E-value=1.9e-11 Score=120.56 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=68.6
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.+..+|||+|||+.+++++|+.+|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..|.|+.|+|..|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 335679999999999999999999999 455555554 356899999999999999999999999999999999999
Q ss_pred CCCCcc
Q 002990 238 VPRSFD 243 (860)
Q Consensus 238 ~pk~~~ 243 (860)
.++...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 776543
No 191
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=5.9e-11 Score=112.80 Aligned_cols=79 Identities=22% Similarity=0.156 Sum_probs=67.1
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcce-EEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEecC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTV-GFVKFESVEQLKNAVEELEGISIGN--KTLKVANVV 238 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gF-gFVtF~s~Eea~kAIe~LnG~~~kG--r~L~V~~A~ 238 (860)
..-++|||+|||+.+++++|+.+|++| .|..+.+.++ .|| |||+|.+.++|.+||+.|||..|.| +.|+|..|+
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 344679999999999999999999999 4444554433 487 9999999999999999999999987 699999998
Q ss_pred CCCcc
Q 002990 239 PRSFD 243 (860)
Q Consensus 239 pk~~~ 243 (860)
++...
T Consensus 101 ~~~l~ 105 (124)
T 2e5i_A 101 PTRLN 105 (124)
T ss_dssp CSCCC
T ss_pred CCcce
Confidence 87654
No 192
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.22 E-value=3.3e-11 Score=134.45 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHH
Q 002990 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 567 ~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~ 644 (860)
.++.|...|+.|++.+......++ ++++....+.+|||+|||+|.+++.+++. ..+|+|||+++.|++.|++|+.
T Consensus 191 ~~~~~~~~pg~Fs~~~~d~~~~~l---l~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~ 267 (375)
T 4dcm_A 191 TDWTIHNHANVFSRTGLDIGARFF---MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE 267 (375)
T ss_dssp TTEEEEECTTCTTCSSCCHHHHHH---HHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CceEEEeCCCcccCCcccHHHHHH---HHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHH
Confidence 357888899999997766554443 44555556689999999999999999998 4799999999999999999999
Q ss_pred HcCCC---cEEEEEccHH
Q 002990 645 INGIK---NCRFVCAKAE 659 (860)
Q Consensus 645 ~Ngi~---Nv~fi~gDae 659 (860)
.|++. +++|+.+|+.
T Consensus 268 ~ngl~~~~~v~~~~~D~~ 285 (375)
T 4dcm_A 268 TNMPEALDRCEFMINNAL 285 (375)
T ss_dssp HHCGGGGGGEEEEECSTT
T ss_pred HcCCCcCceEEEEechhh
Confidence 99985 5999999864
No 193
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.22 E-value=2.1e-11 Score=114.00 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=65.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++|| .|||..|+|+.|+|..|.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 3579999999999999999999999 444455543 567899999999999999999 8999999999999998865
Q ss_pred C
Q 002990 240 R 240 (860)
Q Consensus 240 k 240 (860)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.7e-11 Score=108.11 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=63.0
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhccceeEEeecc-CCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKK-KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~-r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~ 242 (860)
...+|||+|||+.+++++|+++|+++|-....+..+ .++ ||||+|.++++|++||+ |||..+.|+.|+|..|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 345899999999999999999999995332222222 233 99999999999999999 999999999999998866543
No 195
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=99.22 E-value=4.5e-11 Score=137.46 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=58.7
Q ss_pred ccCC--CCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 597 ADLG--PDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 597 ~~l~--~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+.+. ++.+|||+|||+|..++.||... ..|+|+|+++.+++.|++|++.+|+.|+.++++|+.++
T Consensus 111 L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~ 180 (479)
T 2frx_A 111 LFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF 180 (479)
T ss_dssp HTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTH
T ss_pred hCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHh
Confidence 3445 78999999999999999999874 69999999999999999999999999999999998654
No 196
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.21 E-value=6.4e-11 Score=119.15 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=62.1
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
..+...+.+.++.+|||+|||+|.+++.+++.+ .+|+|||+++.+++.|++|++.+++.+++++.+|+.
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 100 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAP 100 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTT
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChh
Confidence 345556677888999999999999999999987 899999999999999999999999999999999864
No 197
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=5.5e-12 Score=119.63 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=66.6
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhccc-----eeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHGI-----LYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~v-----~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
...+|||+|||+.+++++|++||++++. ..+.+.+ ++++|||||+|.++++|++||+. ||..+.||.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 4578999999999999999999999952 3444443 67889999999999999999997 9999999999999
Q ss_pred ecCCCCc
Q 002990 236 NVVPRSF 242 (860)
Q Consensus 236 ~A~pk~~ 242 (860)
.|.++..
T Consensus 101 ~a~~~e~ 107 (123)
T 2dha_A 101 RSTAAEV 107 (123)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 8865533
No 198
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.21 E-value=7.9e-11 Score=123.38 Aligned_cols=180 Identities=13% Similarity=0.077 Sum_probs=122.7
Q ss_pred cccceEEEEECCeEEEEcCCCcccCCH-HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCC
Q 002990 557 VVEARIHDSISNLRFCISPTAFFQVNT-LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMN 632 (860)
Q Consensus 557 ~G~~~i~E~i~gl~f~isp~sFFQvN~-~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis 632 (860)
||+..+. ..+..|++- .++. ..+..|+. -++.+.+++|.+|||||||+|+++..||+.+ ++|+|||++
T Consensus 40 yge~~~~--~~~~e~r~w-----~p~rsklaa~i~~-gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s 111 (233)
T 4df3_A 40 YGERIFR--YNGEEYREW-----NAYRSKLAAALLK-GLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFA 111 (233)
T ss_dssp SSCCEEE--ETTEEEEEC-----CTTTCHHHHHHHT-TCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECC
T ss_pred cCceEEE--cCCceeeeE-----CCCchHHHHHHHh-chhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCC
Confidence 5665443 255666652 2222 22333333 2345678999999999999999999999874 699999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCC
Q 002990 633 ASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDP 712 (860)
Q Consensus 633 ~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (860)
+.|++.|+++++.. .|+..+.+|+.+. ..+..
T Consensus 112 ~~~~~~l~~~a~~~--~ni~~V~~d~~~p-----~~~~~----------------------------------------- 143 (233)
T 4df3_A 112 PRVMRDLLTVVRDR--RNIFPILGDARFP-----EKYRH----------------------------------------- 143 (233)
T ss_dssp HHHHHHHHHHSTTC--TTEEEEESCTTCG-----GGGTT-----------------------------------------
T ss_pred HHHHHHHHHhhHhh--cCeeEEEEeccCc-----ccccc-----------------------------------------
Confidence 99999999988653 5899998876431 00100
Q ss_pred CCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEe---------
Q 002990 713 ENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLVYIS--------- 783 (860)
Q Consensus 713 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVS--------- 783 (860)
.....|+|+.|.|..+-...+++.+....++...+.||
T Consensus 144 ---------------------------------~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~ 190 (233)
T 4df3_A 144 ---------------------------------LVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVT 190 (233)
T ss_dssp ---------------------------------TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHH
T ss_pred ---------------------------------ccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCC
Confidence 00123789999999887667787776666778777776
Q ss_pred -cCchhhHHHHHHhcCCCCCcccccccccCccccccccccccccccCCCCCCccceeeeeeccCCCCCceeEEEEEeC
Q 002990 784 -CNPETLVANAIELCTPSPDKIEKNKDNRGWRNMSSAGLARHRAKSMPISKPFQPVKAMAVDLFPHTSHCEMVMLLER 860 (860)
Q Consensus 784 -Cnp~tl~rD~~~L~~p~~~~~~~~k~~~G~~~~~~~~~~~~r~k~~~~~~pf~~~k~~~vDmFPhT~HvE~V~lLeR 860 (860)
|.+..+.+....|. ..+|++....-++-||+ .|+..++.+.|
T Consensus 191 ~p~~~~~~~ev~~L~----------------------------------~~GF~l~e~i~L~pf~~-~H~lv~~~~rR 233 (233)
T 4df3_A 191 TEPSEVYKREIKTLM----------------------------------DGGLEIKDVVHLDPFDR-DHAMIYAVMRR 233 (233)
T ss_dssp TCCCHHHHHHHHHHH----------------------------------HTTCCEEEEEECTTTST-TEEEEEECC--
T ss_pred CChHHHHHHHHHHHH----------------------------------HCCCEEEEEEccCCCCC-ceEEEEEEEeC
Confidence 44445555554442 13588888888888887 58888887765
No 199
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.83 E-value=1.4e-12 Score=120.86 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=68.1
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccc-ee--------EEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGI-LY--------KSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v-~~--------~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
.+..+|||+|||+.+++++|+++|+++|. .. +.+.. ++++|||||+|.+.++|++||+.|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45568999999999999999999999943 32 33332 4678999999999999999999999999999
Q ss_pred ceeEEEecCCCCc
Q 002990 230 KTLKVANVVPRSF 242 (860)
Q Consensus 230 r~L~V~~A~pk~~ 242 (860)
+.|+|..|.+++.
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999977643
No 200
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.20 E-value=4.4e-11 Score=114.59 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=68.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcce-EEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTV-GFVKFESVEQLKNAVEELEGISIGN--KTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gF-gFVtF~s~Eea~kAIe~LnG~~~kG--r~L~V~~A 237 (860)
..+-++|||+|||+.+++++|+.+|++|| |..+.+. .+++|| |||+|.+.++|++||+.|||..|.| +.|+|..|
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~-~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEE-EETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEE-cCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 34457899999999999999999999994 4444433 345788 9999999999999999999999988 89999999
Q ss_pred CCCCcc
Q 002990 238 VPRSFD 243 (860)
Q Consensus 238 ~pk~~~ 243 (860)
+++...
T Consensus 104 k~~~l~ 109 (130)
T 3zzy_A 104 KLTSLN 109 (130)
T ss_dssp SCSSCC
T ss_pred CCCcee
Confidence 887554
No 201
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.20 E-value=2.3e-11 Score=126.78 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=80.0
Q ss_pred ECCeEEEEcCCCcccC--CHHHHHHHHHHHhhhccC--CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHH
Q 002990 566 ISNLRFCISPTAFFQV--NTLAAEKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDA 639 (860)
Q Consensus 566 i~gl~f~isp~sFFQv--N~~~ae~L~~~i~~~~~l--~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~A 639 (860)
+.|+.|.+++..|+|. |....+.++..+...+.. .++.+|||+|||+|.+++.++.. ..+|+|||+++.|++.|
T Consensus 26 ~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a 105 (254)
T 2h00_A 26 DFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYA 105 (254)
T ss_dssp HHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHH
T ss_pred cCCeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 3577788899999997 566777777777765543 25679999999999999999876 47999999999999999
Q ss_pred HHHHHHcCCCc-EEEEEccHHH
Q 002990 640 HRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 640 r~NA~~Ngi~N-v~fi~gDae~ 660 (860)
++|++.+++.+ ++|+++|+.+
T Consensus 106 ~~~~~~~~~~~~v~~~~~d~~~ 127 (254)
T 2h00_A 106 KKNVEQNNLSDLIKVVKVPQKT 127 (254)
T ss_dssp HHHHHHTTCTTTEEEEECCTTC
T ss_pred HHHHHHcCCCccEEEEEcchhh
Confidence 99999999975 9999999754
No 202
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.19 E-value=1.4e-11 Score=104.74 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=60.7
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
+|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.++++|++|++. +|..+.|+.|+|..|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999994 44444433 46789999999999999999995 999999999998764
No 203
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.19 E-value=4.4e-11 Score=106.40 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=58.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCcc--CCceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI--GNKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~--kGr~L~V~~A~ 238 (860)
..+..+|||+|||+.+++++|+++|+++| |..+.+. .+++|||||+|.++++|+ .|+|..+ +|+.|.|..|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~-~~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP-KPFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC-SSCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEe-eCCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 45677899999999999999999999995 4444443 358999999999999987 4688775 58999999998
Q ss_pred CCCc
Q 002990 239 PRSF 242 (860)
Q Consensus 239 pk~~ 242 (860)
||..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7643
No 204
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=99.18 E-value=5.5e-11 Score=129.40 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=59.5
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+.++.+|||+|||+|..++.||.. ..+|+|+|+++.+++.+++|++.+|+.|++++++|+.+
T Consensus 96 ~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~ 164 (309)
T 2b9e_A 96 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 164 (309)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred HHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHh
Confidence 3456778899999999999999999985 36999999999999999999999999999999999754
No 205
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.18 E-value=5e-11 Score=119.15 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=58.0
Q ss_pred EEEcCCCcccCCHHHHHHHHHHHhhhccC-CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcC
Q 002990 571 FCISPTAFFQVNTLAAEKLYSLGGDWADL-GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEING 647 (860)
Q Consensus 571 f~isp~sFFQvN~~~ae~L~~~i~~~~~l-~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ng 647 (860)
|.++|..|... ..++.++..+.+.+.. .++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+..++
T Consensus 1 f~~~~~~~~p~--~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 78 (215)
T 4dzr_A 1 FEVGPDCLIPR--PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG 78 (215)
T ss_dssp CBCSGGGGSCC--HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------
T ss_pred CcCCCCccCCC--ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 45667777543 5567788888877655 678899999999999999999984 499999999999999999999999
Q ss_pred CCcEEEEEccHHHHHHH
Q 002990 648 IKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 648 i~Nv~fi~gDae~~~~~ 664 (860)
+ +++|+++|+.+.+..
T Consensus 79 ~-~~~~~~~d~~~~~~~ 94 (215)
T 4dzr_A 79 A-VVDWAAADGIEWLIE 94 (215)
T ss_dssp -----CCHHHHHHHHHH
T ss_pred C-ceEEEEcchHhhhhh
Confidence 8 899999999885543
No 206
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.18 E-value=1.1e-10 Score=128.25 Aligned_cols=72 Identities=26% Similarity=0.286 Sum_probs=63.3
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+...+..++.+.++..|||+|||+|++++.++..+ .+|+|+|+++.|++.|++|++.+|+.+++|+++|+.+
T Consensus 191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~ 265 (354)
T 3tma_A 191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARH 265 (354)
T ss_dssp HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGG
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhh
Confidence 33344455567788899999999999999999976 7999999999999999999999999999999999765
No 207
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.17 E-value=3.5e-11 Score=122.96 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=68.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~ 241 (860)
..+|||+|||+.+++++|+++|+++ .|..+++.. ..++|||||+|.+.|+|++||+.|||..+.|+.|+|..|++|.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 3579999999999999999999999 455555554 4568999999999999999999999999999999999998763
No 208
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=9.4e-11 Score=106.05 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=62.4
Q ss_pred EEEeCCCcccCHHHHH----HHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCcc
Q 002990 168 KCLVHLPRKWHSDNLK----KFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFD 243 (860)
Q Consensus 168 i~VgnLP~~~~~~~Lk----k~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~~ 243 (860)
|||+|||+.++.++|+ .+|++||.....| ..|||||.|.+.|+|++|++.|||..+-||+|+|..|+.+++.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 9999999999999855 7899997444444 2399999999999999999999999999999999999876553
No 209
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.16 E-value=5.9e-11 Score=116.21 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.....+|||+|||..+++++|+++|++++ |... ...++++|||||+|.+.++|.+|++.|||..+.|+.|+|..|.||
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 34567899999999999999999999994 3333 233678999999999999999999999999999999999999887
Q ss_pred C
Q 002990 241 S 241 (860)
Q Consensus 241 ~ 241 (860)
+
T Consensus 175 ~ 175 (175)
T 1fje_B 175 G 175 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 210
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.15 E-value=8.5e-11 Score=127.84 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=59.5
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+.++.+|||+|||+|.+++.|+... .+|+|+|+++.+++.|++|++.+|+.|+.++++|+.+
T Consensus 112 ~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~ 180 (315)
T 1ixk_A 112 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180 (315)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhh
Confidence 34467788999999999999999999864 6899999999999999999999999999999999764
No 211
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.15 E-value=8.4e-11 Score=121.20 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=73.3
Q ss_pred EEcCCCcccCCHHH-HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-C
Q 002990 572 CISPTAFFQVNTLA-AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-K 649 (860)
Q Consensus 572 ~isp~sFFQvN~~~-ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~ 649 (860)
.+.+..|||.++.. ++.+...+... .++.+|||+|||+|.+++.+++.+.+|+|||+++.|++.|++|++.+++ .
T Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 127 (241)
T 3gdh_A 51 KLDREGWFSVTPEKIAEHIAGRVSQS---FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIAD 127 (241)
T ss_dssp CCCHHHHHHCCCHHHHHHHHHHHHHH---SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGG
T ss_pred eecccceeecCHHHHHHHHHHHhhhc---cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 34667888888764 45555554433 3678999999999999999999999999999999999999999999999 6
Q ss_pred cEEEEEccHHHH
Q 002990 650 NCRFVCAKAEDV 661 (860)
Q Consensus 650 Nv~fi~gDae~~ 661 (860)
+++|+++|+.++
T Consensus 128 ~~~~~~~d~~~~ 139 (241)
T 3gdh_A 128 KIEFICGDFLLL 139 (241)
T ss_dssp GEEEEESCHHHH
T ss_pred CeEEEECChHHh
Confidence 899999998774
No 212
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.14 E-value=4.6e-11 Score=120.41 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=63.0
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+.+++.+.++.+|||+|||+|.+++.+++.+.+|+|||+++.+++.|++|+..+++.|++|+.+|+.+
T Consensus 67 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 136 (210)
T 3lbf_A 67 ARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ 136 (210)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 3445556677889999999999999999999999999999999999999999999999999999999754
No 213
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.13 E-value=1.5e-10 Score=130.87 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=58.3
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
.++.+.++.+|||+|||+|.+++.++... .+|+|+|+++.+++.+++|++.+|+ ++.++++|+.+.
T Consensus 240 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~ 307 (429)
T 1sqg_A 240 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYP 307 (429)
T ss_dssp HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCT
T ss_pred HHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhc
Confidence 34456788999999999999999999876 6999999999999999999999998 578999987653
No 214
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.9e-10 Score=110.68 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=67.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
..+..+|+|+|||..+++++|+++|+++ .|....+.. ++++|||||+|.+.++|.+|++.|||..+.|+.|+|..
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 4456789999999999999999999999 445555543 46789999999999999999999999999999999998
Q ss_pred cCC
Q 002990 237 VVP 239 (860)
Q Consensus 237 A~p 239 (860)
|++
T Consensus 164 a~~ 166 (166)
T 3md3_A 164 AAK 166 (166)
T ss_dssp SCC
T ss_pred cCC
Confidence 853
No 215
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.12 E-value=1.2e-10 Score=116.77 Aligned_cols=79 Identities=10% Similarity=0.217 Sum_probs=69.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
..++.+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3456789999999999999999999999 455555554 567899999999999999999999999999999999988
Q ss_pred CCC
Q 002990 238 VPR 240 (860)
Q Consensus 238 ~pk 240 (860)
.+.
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 653
No 216
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.12 E-value=1.6e-10 Score=111.33 Aligned_cols=76 Identities=20% Similarity=0.388 Sum_probs=66.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||+.+++++|+++|+++| |....+.+ ++++|||||+|.++++|++|++.|||..+.|+.|+|..+.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 35799999999999999999999994 44444443 35679999999999999999999999999999999998876
Q ss_pred C
Q 002990 240 R 240 (860)
Q Consensus 240 k 240 (860)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 217
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.12 E-value=2e-10 Score=117.38 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=68.4
Q ss_pred CCeEEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccC-CcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHH
Q 002990 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCG-TGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 567 ~gl~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CG-tG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~ 644 (860)
.+..|.+.+..|+.. ..++.|+ +.. .+.++.+|||+||| +|.+++.+++. ..+|+|||+++.+++.|++|+.
T Consensus 27 ~~~~~~~~~~~~~p~--~~~~~l~--~~~--~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~ 100 (230)
T 3evz_A 27 FGLDIEYHPKGLVTT--PISRYIF--LKT--FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIE 100 (230)
T ss_dssp HCCCCCCCTTSCCCC--HHHHHHH--HHT--TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHH
T ss_pred cCCceecCCCeEeCC--CchhhhH--hHh--hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH
Confidence 345566777877643 2334332 222 24578899999999 99999999998 7999999999999999999999
Q ss_pred HcCCCcEEEEEccH
Q 002990 645 INGIKNCRFVCAKA 658 (860)
Q Consensus 645 ~Ngi~Nv~fi~gDa 658 (860)
.+++ +++++++|+
T Consensus 101 ~~~~-~v~~~~~d~ 113 (230)
T 3evz_A 101 RNNS-NVRLVKSNG 113 (230)
T ss_dssp HTTC-CCEEEECSS
T ss_pred HhCC-CcEEEeCCc
Confidence 9999 899999985
No 218
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.11 E-value=1.4e-10 Score=112.20 Aligned_cols=77 Identities=25% Similarity=0.306 Sum_probs=66.5
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
+..+|||+|||+.+++++|+++|+++| |....+.+ ++++|||||+|.++++|++|++.|||..+.|+.|+|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 346799999999999999999999994 44444443 3567999999999999999999999999999999999886
Q ss_pred CC
Q 002990 239 PR 240 (860)
Q Consensus 239 pk 240 (860)
|+
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 219
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.11 E-value=1.4e-10 Score=116.68 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=70.3
Q ss_pred CeEEEEcCCCccc-CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHH
Q 002990 568 NLRFCISPTAFFQ-VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 568 gl~f~isp~sFFQ-vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~ 645 (860)
+..+.+.|...|. ........+...+..+ +.++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+..
T Consensus 28 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 105 (205)
T 3grz_A 28 QEIIRLDPGLAFGTGNHQTTQLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAAL 105 (205)
T ss_dssp CEEEEESCC-----CCHHHHHHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred ceeEEecCCcccCCCCCccHHHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4567778876444 4455555555555554 3567899999999999999999874 5999999999999999999999
Q ss_pred cCCCcEEEEEccHH
Q 002990 646 NGIKNCRFVCAKAE 659 (860)
Q Consensus 646 Ngi~Nv~fi~gDae 659 (860)
+++.+++++++|+.
T Consensus 106 ~~~~~v~~~~~d~~ 119 (205)
T 3grz_A 106 NGIYDIALQKTSLL 119 (205)
T ss_dssp TTCCCCEEEESSTT
T ss_pred cCCCceEEEecccc
Confidence 99988999999863
No 220
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.11 E-value=3.3e-10 Score=111.85 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=57.4
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.++.+|||+|||+|.+++.|++.+.+|+|||+++.|++.|++|++.+++.+++|++++++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~ 81 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHEN 81 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGG
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHH
Confidence 45788999999999999999999999999999999999999999999999999999977653
No 221
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.10 E-value=2e-10 Score=115.94 Aligned_cols=80 Identities=16% Similarity=0.291 Sum_probs=69.7
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
....|||+|||..+++++|+++|+++ .|..+.+.. ++++|||||+|.+.|+|.+|++.|||..|.|+.|+|..|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 34689999999999999999999999 455555554 3568999999999999999999999999999999999998
Q ss_pred CCCcc
Q 002990 239 PRSFD 243 (860)
Q Consensus 239 pk~~~ 243 (860)
+++.+
T Consensus 204 ~~~~~ 208 (216)
T 2qfj_A 204 TPPMP 208 (216)
T ss_dssp SCSST
T ss_pred CCCCC
Confidence 76543
No 222
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.10 E-value=5.1e-10 Score=109.60 Aligned_cols=75 Identities=31% Similarity=0.419 Sum_probs=65.5
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~ 661 (860)
+.+...+...+.+.++.+|||+|||+|.+++.+++...+|+|+|+++.+++.|++|+..+++ .++.++++|+.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 94 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh
Confidence 34445555556677889999999999999999999889999999999999999999999999 7899999998763
No 223
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.10 E-value=9.8e-11 Score=113.37 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=66.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||..+++++|+++|+++ .|....+.. ++++|||||+|.+.++|++|++ |||..+.|+.|+|..|.|
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 4579999999999999999999999 455555543 4678999999999999999998 899999999999999988
Q ss_pred C
Q 002990 240 R 240 (860)
Q Consensus 240 k 240 (860)
|
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 224
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.10 E-value=5.5e-11 Score=107.38 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=65.7
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
...+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|++||+ ||..+.|+.|.|..|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 34679999999999999999999999 454455544 4578999999999999999999 99999999999998876
Q ss_pred CC
Q 002990 240 RS 241 (860)
Q Consensus 240 k~ 241 (860)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 225
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.09 E-value=7.1e-10 Score=117.02 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=61.8
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHH---cCCC-cEEEEEccHHHHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEI---NGIK-NCRFVCAKAEDVMG 663 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~---Ngi~-Nv~fi~gDae~~~~ 663 (860)
+..++...++.+|||+|||+|.+++.|+.+. .+|+|||+++.+++.|++|+.. +++. +++++++|+.++..
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHH
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhh
Confidence 3445566778899999999999999999985 6999999999999999999999 8986 69999999876543
No 226
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.09 E-value=2.6e-10 Score=107.36 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=65.6
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~ 241 (860)
.+..+|||+|| .+++++|+++|+++| |..+.+ .+++|||||+|.+.++|++||+.|||..+.|+.|+|..|++++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 44568999996 699999999999994 444443 4788999999999999999999999999999999999998764
Q ss_pred c
Q 002990 242 F 242 (860)
Q Consensus 242 ~ 242 (860)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 227
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=2.1e-10 Score=106.22 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=60.3
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceeEEeec-------cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-------~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
....+|||+|||+.+++++|+++|+++|.....+.. ++++|||||+|.++++|++||+.|++ +.|+.|.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEec
Confidence 445689999999999999999999999543344433 36689999999999999999999954 678877776
Q ss_pred ecC
Q 002990 236 NVV 238 (860)
Q Consensus 236 ~A~ 238 (860)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 553
No 228
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.09 E-value=2e-10 Score=112.41 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=66.7
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccc----eeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGI----LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v----~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.....+|||+|||+.+++++|+++|.+++. .......++++|||||+|.++++|++|+ .|||..+.|+.|+|..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 455678999999999999999999998832 2233344788999999999999999999 59999999999999988
Q ss_pred CCC
Q 002990 238 VPR 240 (860)
Q Consensus 238 ~pk 240 (860)
.++
T Consensus 89 ~~~ 91 (175)
T 1fje_B 89 KGR 91 (175)
T ss_dssp CCS
T ss_pred CCc
Confidence 765
No 229
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.09 E-value=4.2e-10 Score=115.93 Aligned_cols=121 Identities=16% Similarity=0.089 Sum_probs=95.2
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHHHHhhhhc
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGSLLKDYL 670 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~~~~~l~~~~~ 670 (860)
.+...+.+.++.+|||+|||+|.+++.+++...+|+++|+++.+++.|++|+..+++ .++.++.+|+.+.+ +.
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~--- 155 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE---VP--- 155 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC---CC---
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc---cC---
Confidence 344555677889999999999999999999888999999999999999999999998 68999988864310 00
Q ss_pred CCccccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCc
Q 002990 671 NPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKN 750 (860)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (860)
+ . ..
T Consensus 156 ----------------------------------------------------------------------~----~--~~ 159 (248)
T 2yvl_A 156 ----------------------------------------------------------------------E----G--IF 159 (248)
T ss_dssp ----------------------------------------------------------------------T----T--CB
T ss_pred ----------------------------------------------------------------------C----C--cc
Confidence 0 0 13
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCCeEEEEecCchhhHHHHHHhc
Q 002990 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLVYISCNPETLVANAIELC 797 (860)
Q Consensus 751 dv~IvDPPR~Gl~~~vi~~lr~~~~~~rlVYVSCnp~tl~rD~~~L~ 797 (860)
|+||+|||-. ..+++.+....++...+++.+.......++..+.
T Consensus 160 D~v~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l 203 (248)
T 2yvl_A 160 HAAFVDVREP---WHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESI 203 (248)
T ss_dssp SEEEECSSCG---GGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHS
T ss_pred cEEEECCcCH---HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 7999999832 2567777666788999999998777777877765
No 230
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.08 E-value=2.3e-10 Score=116.92 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=67.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
+..+|||+|||+.+++++|+++|+++ .|..+++.+ ++++|||||+|.+.++|++||+.|||..+.|+.|+|..+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 44579999999999999999999999 455566654 5678999999999999999999999999999999998775
Q ss_pred CC
Q 002990 239 PR 240 (860)
Q Consensus 239 pk 240 (860)
+.
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 231
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.08 E-value=8.7e-10 Score=112.72 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=56.3
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.+|||||||+|.+++.||+. ...|+|||+++.|++.|++|+..+++.|+.|+++|+.+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~ 99 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT 99 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH
Confidence 4678999999999999999987 46999999999999999999999999999999999987
No 232
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.07 E-value=2.1e-10 Score=111.54 Aligned_cols=73 Identities=16% Similarity=0.337 Sum_probs=64.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc----cc------eeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH----GI------LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~----~v------~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V 234 (860)
.-+|||+|||+.+++++|+++|+++ |+ ....+..++++|||||+|.++|+|++|+ .|||..+.|+.|+|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeee
Confidence 4579999999999999999999999 53 4455556788999999999999999999 89999999999999
Q ss_pred EecC
Q 002990 235 ANVV 238 (860)
Q Consensus 235 ~~A~ 238 (860)
..+.
T Consensus 83 ~~~~ 86 (172)
T 2g4b_A 83 RRPH 86 (172)
T ss_dssp ECCS
T ss_pred cCCc
Confidence 8664
No 233
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.07 E-value=1.3e-09 Score=110.96 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-E
Q 002990 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKN-C 651 (860)
Q Consensus 576 ~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~N-v 651 (860)
..++++....+..+...+. ..++.+|||+|||+|.+++.|++. ..+|+|||+++.+++.|++|++.+++.+ +
T Consensus 43 ~~~~~~~~~~~~~l~~l~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v 118 (225)
T 3tr6_A 43 TYAMQTAPEQAQLLALLVK----LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKI 118 (225)
T ss_dssp TGGGSCCHHHHHHHHHHHH----HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTE
T ss_pred CCccccCHHHHHHHHHHHH----hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCce
Confidence 4557777777776655443 235679999999999999999987 5799999999999999999999999964 9
Q ss_pred EEEEccHHHHHHHH
Q 002990 652 RFVCAKAEDVMGSL 665 (860)
Q Consensus 652 ~fi~gDae~~~~~l 665 (860)
+|+++|+.+.+..+
T Consensus 119 ~~~~~d~~~~~~~~ 132 (225)
T 3tr6_A 119 GLRLSPAKDTLAEL 132 (225)
T ss_dssp EEEESCHHHHHHHH
T ss_pred EEEeCCHHHHHHHh
Confidence 99999998877654
No 234
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.07 E-value=2.2e-10 Score=110.14 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=64.3
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 167 ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
+|||+|||..+++++|+++|+++| |....+.. ++++|||||+|.+.++|++|++.|||..+.|+.|+|..+.++
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 599999999999999999999994 44444443 457899999999999999999999999999999999988654
No 235
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.07 E-value=4.5e-10 Score=116.69 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=61.6
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAE 659 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae 659 (860)
.+..++.+.++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|++.+|+.+ ++++.+|+.
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 155 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY 155 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh
Confidence 4555667788999999999999999999988 6899999999999999999999999977 999999975
No 236
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.06 E-value=6.5e-10 Score=113.65 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=70.0
Q ss_pred cccceEEEEECCeEEEE-cCCCcccCCHHHHHHHHHHH---hhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEE
Q 002990 557 VVEARIHDSISNLRFCI-SPTAFFQVNTLAAEKLYSLG---GDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGI 629 (860)
Q Consensus 557 ~G~~~i~E~i~gl~f~i-sp~sFFQvN~~~ae~L~~~i---~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigV 629 (860)
+|...+ ...+..|++ .|.. ..++..+ .+.+.+.++.+|||+|||+|.+++.|++.. .+|+||
T Consensus 36 ~g~~~~--~~~~~~~~~~~p~~---------~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~v 104 (227)
T 1g8a_A 36 YGERVI--KWEGEEYRIWNPNR---------SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGI 104 (227)
T ss_dssp TTCCEE--EETTEEEEECCTTT---------CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEE
T ss_pred cCceEE--EecCeEEEEeCCCc---------hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEE
Confidence 454433 235777877 5553 3344455 344457788899999999999999999873 799999
Q ss_pred eCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 630 EMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 630 Eis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
|+++.|++.+++|++.+ .|++|+++|+.+
T Consensus 105 D~s~~~~~~~~~~~~~~--~~v~~~~~d~~~ 133 (227)
T 1g8a_A 105 EFSPRVLRELVPIVEER--RNIVPILGDATK 133 (227)
T ss_dssp ESCHHHHHHHHHHHSSC--TTEEEEECCTTC
T ss_pred ECCHHHHHHHHHHHhcc--CCCEEEEccCCC
Confidence 99999999999999876 689999999754
No 237
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=99.06 E-value=2.8e-10 Score=120.69 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=61.6
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCH-------HHHHHHHHHHHHcCCCc-EEEEEccHHHHHHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNA-------SAVSDAHRNAEINGIKN-CRFVCAKAEDVMGSL 665 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~-------~AIe~Ar~NA~~Ngi~N-v~fi~gDae~~~~~l 665 (860)
.+.++.+|||+|||+|.+++.||+.+.+|+|||+++ .+++.|++|++.|++.+ ++|+++|+.+++..+
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPAL 155 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhh
Confidence 445678999999999999999999988999999999 99999999999999865 999999999887654
No 238
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.06 E-value=3.9e-10 Score=115.43 Aligned_cols=75 Identities=12% Similarity=0.048 Sum_probs=64.8
Q ss_pred cccEEEeCCC-cccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 165 ELSKCLVHLP-RKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 165 ~~ki~VgnLP-~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
+..|||+||| +.+++++|+.+|++|| |..+++. +.++|||||+|.++++|++||+.|||+.+.|+.|+|..|+.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~-~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFM-KSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEEC-TTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 4579999999 8999999999999994 4444443 335799999999999999999999999999999999988543
No 239
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.06 E-value=3.3e-10 Score=112.72 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=69.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
....+|||+|||+.+++++|+++|+++ .|....+.. ++++|||||+|.+.++|.+|++.|||..+.|+.|+|..|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456789999999999999999999999 454555543 456899999999999999999999999999999999999
Q ss_pred CCCC
Q 002990 238 VPRS 241 (860)
Q Consensus 238 ~pk~ 241 (860)
.|+.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 240
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.06 E-value=1.9e-10 Score=114.47 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=66.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc----cc------eeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH----GI------LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~----~v------~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V 234 (860)
.-+|||+|||+.+++++|+++|+++ ++ ....+..++++|||||+|.++|+|++|+ .|||..+.|+.|+|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEE
Confidence 4579999999999999999999999 53 3455555788999999999999999999 89999999999999
Q ss_pred EecCCC
Q 002990 235 ANVVPR 240 (860)
Q Consensus 235 ~~A~pk 240 (860)
..+.++
T Consensus 83 ~~~~~~ 88 (198)
T 2yh0_A 83 RRPHDY 88 (198)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 877654
No 241
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.04 E-value=3e-10 Score=110.44 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=65.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
....+|||+|||+.+++++|+++|+++ .|....+.. ++++|||||+|.+.++|++|++.|||..+.|+.|+|..|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 335789999999999999999999999 455455543 456899999999999999999999999999999999876
No 242
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=2.4e-10 Score=100.47 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=60.0
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCcc--CCceeEEEecCCC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI--GNKTLKVANVVPR 240 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~--kGr~L~V~~A~pk 240 (860)
+..+|||+|||+.+++++|+++|+++| |..+.+. +.++|||||+|.+.++|++ ++|..+ .|+.|+|..|.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP-KPFRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC-SSCCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe-cCCCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecCCC
Confidence 456899999999999999999999994 4444433 3578999999999999975 466554 8999999988776
Q ss_pred Cc
Q 002990 241 SF 242 (860)
Q Consensus 241 ~~ 242 (860)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 243
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.04 E-value=2.6e-10 Score=115.30 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=60.1
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
.+.+.+.+.++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++++..+++.++.++.+|+
T Consensus 68 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~ 137 (215)
T 2yxe_A 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDG 137 (215)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCG
T ss_pred HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 34445567788899999999999999999886 79999999999999999999999999999999986
No 244
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.03 E-value=4.5e-10 Score=111.56 Aligned_cols=78 Identities=14% Similarity=0.231 Sum_probs=66.7
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~ 236 (860)
.....+|||+|||+.+++++|+++|+++ .|..+.+.+ ++++|||||+|.++++|++||+. +|..+.|+.|.|..
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 4456689999999999999999999999 455555554 45689999999999999999987 99999999999998
Q ss_pred cCCC
Q 002990 237 VVPR 240 (860)
Q Consensus 237 A~pk 240 (860)
+.++
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8654
No 245
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.03 E-value=7.9e-10 Score=110.21 Aligned_cols=63 Identities=17% Similarity=0.321 Sum_probs=57.2
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
.+.++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|++.+|+ .+++|+++|+.+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 85 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQN 85 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGG
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence 45678899999999999999999873 5999999999999999999999998 789999999754
No 246
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.03 E-value=6.9e-10 Score=126.22 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=69.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.+..+|||+|||+.+++++|+.+|++| .|..+.+.. ++++|||||+|.+.++|++||+.|||+.|.|+.|.|..|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345689999999999999999999999 455555543 467899999999999999999999999999999999999
Q ss_pred CCCCc
Q 002990 238 VPRSF 242 (860)
Q Consensus 238 ~pk~~ 242 (860)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87643
No 247
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.02 E-value=2.7e-11 Score=128.89 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=57.9
Q ss_pred CCcccCCHHHH-HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc
Q 002990 576 TAFFQVNTLAA-EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 576 ~sFFQvN~~~a-e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~N 646 (860)
..|+|.+.... ......+.+.+.+.++.+|||||||+|.+++.|++.+.+|+|||+|+.|++.|++|+..+
T Consensus 19 ~~f~~~~~~~~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~ 90 (261)
T 3iv6_A 19 NQFWTIGRVAARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR 90 (261)
T ss_dssp THHHHTSCGGGSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS
T ss_pred HHHHHHhhccccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc
Confidence 55666554332 334455667777888999999999999999999999999999999999999999997654
No 248
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.02 E-value=6.5e-10 Score=117.54 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=68.7
Q ss_pred CCccccEEEeCCCcccCHHHHH----HHhhhc-cceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLK----KFLADH-GILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lk----k~l~~~-~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
..+..+|||+|||+.+++++|+ .+|+++ .|..+++.+ ++++|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3456689999999999999988 788888 444444443 6788999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 002990 236 NVVPRSF 242 (860)
Q Consensus 236 ~A~pk~~ 242 (860)
.|.++..
T Consensus 86 ~a~~~~~ 92 (282)
T 3pgw_A 86 YAKTDSD 92 (282)
T ss_pred EeccCcc
Confidence 8866543
No 249
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.01 E-value=6.8e-10 Score=111.97 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=64.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
..+|||+|||+.+++++|+++|+++| |..+.+.+ ++++|||||+|.+.++|++|++.|||..+.|+.|+|..+..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 45799999999999999999999994 55555543 45789999999999999999999999999999999976643
No 250
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.01 E-value=4.3e-10 Score=111.70 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=65.6
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
...+|||+|||+.+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|.+|++. +|..+.|+.|+|..|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 34689999999999999999999999 455555554 45689999999999999999987 8999999999999998
Q ss_pred CCCcc
Q 002990 239 PRSFD 243 (860)
Q Consensus 239 pk~~~ 243 (860)
|+...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 87554
No 251
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.99 E-value=3.8e-09 Score=107.72 Aligned_cols=86 Identities=19% Similarity=0.075 Sum_probs=71.6
Q ss_pred CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcE
Q 002990 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGI-KNC 651 (860)
Q Consensus 576 ~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv 651 (860)
..+++++......|...+ ...++.+|||+|||+|.+++.+++. ..+|++||+++.+++.|++|++.+|+ .++
T Consensus 48 ~~~~~~~~~~~~~l~~l~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i 123 (229)
T 2avd_A 48 QGDSMMTCEQAQLLANLA----RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKI 123 (229)
T ss_dssp TGGGSCCHHHHHHHHHHH----HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTE
T ss_pred CCCCccCHHHHHHHHHHH----HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeE
Confidence 456778887777554333 2345679999999999999999986 46999999999999999999999998 589
Q ss_pred EEEEccHHHHHHHH
Q 002990 652 RFVCAKAEDVMGSL 665 (860)
Q Consensus 652 ~fi~gDae~~~~~l 665 (860)
+|+.+|+.+.+..+
T Consensus 124 ~~~~~d~~~~~~~~ 137 (229)
T 2avd_A 124 DLRLKPALETLDEL 137 (229)
T ss_dssp EEEESCHHHHHHHH
T ss_pred EEEEcCHHHHHHHH
Confidence 99999998877655
No 252
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.1e-09 Score=101.11 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=65.0
Q ss_pred ccccEEEeCCCcccC-----------HHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCce
Q 002990 164 VELSKCLVHLPRKWH-----------SDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~-----------~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~ 231 (860)
+.-.|+|+||..... +++|+++|+++ .|..+.+..+.++|||||+|.+.++|++||+.|||..|.||+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 344699999944332 57999999999 455555544568999999999999999999999999999999
Q ss_pred eEEEecCCCCc
Q 002990 232 LKVANVVPRSF 242 (860)
Q Consensus 232 L~V~~A~pk~~ 242 (860)
|+|..|.|+..
T Consensus 94 l~v~~a~~~~~ 104 (112)
T 2dit_A 94 ITAQAWDGTTD 104 (112)
T ss_dssp CEEEECCSCCC
T ss_pred EEEEEeCCCCC
Confidence 99999987644
No 253
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.99 E-value=1.1e-09 Score=112.97 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=67.4
Q ss_pred CccccEEEeCCCc-ccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 002990 163 DVELSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (860)
Q Consensus 163 ~~~~ki~VgnLP~-~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk 240 (860)
.+..+|||+|||+ .+++++|+++|+++| |..+.+.+. .+|||||+|.+.|+|++|++.|||..|.|+.|+|..+.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~-~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT-TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 3456899999999 999999999999995 444444433 3799999999999999999999999999999999988765
Q ss_pred Cc
Q 002990 241 SF 242 (860)
Q Consensus 241 ~~ 242 (860)
..
T Consensus 111 ~~ 112 (229)
T 2adc_A 111 NV 112 (229)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 254
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.99 E-value=1.2e-09 Score=105.54 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=65.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCC--ceeEE
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN--KTLKV 234 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG--r~L~V 234 (860)
..+...|+|+|||..+++++|+++|+++ .|....+.. ++++|||||+|.+.++|.+|++.|||..+.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3456789999999999999999999999 455555443 3567999999999999999999999999988 89999
Q ss_pred Eec
Q 002990 235 ANV 237 (860)
Q Consensus 235 ~~A 237 (860)
..|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 765
No 255
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.98 E-value=1.2e-09 Score=112.86 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=68.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEecCCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVANVVPR 240 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k-Gr~L~V~~A~pk 240 (860)
.+...|||+|||..+++++|+++|+++|+....+.. .+++|||||+|.+.++|.+|++.|||..+. |+.|+|..|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 345689999999999999999999999844455555 457899999999999999999999999999 999999998764
No 256
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.97 E-value=5.1e-09 Score=108.43 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=57.1
Q ss_pred CCCCCcEEeeccCCcHHHHHHHh--hCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAH--RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~--~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+.++.+|||+|||+|.+++.|+. ...+|+|||+++.|++.|++|++.+++.|++|+++|++++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 132 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETF 132 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHH
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHh
Confidence 34678999999999999999995 3579999999999999999999999998999999998764
No 257
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.97 E-value=9.5e-09 Score=104.53 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=68.2
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEE
Q 002990 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFV 654 (860)
Q Consensus 579 FQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi 654 (860)
+++....+..|...+. ..++.+|||+|||+|.+++.+++. ..+|+|||+++.+++.|++|+..+|+.+ ++++
T Consensus 40 ~~~~~~~~~~l~~l~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 115 (223)
T 3duw_A 40 HDVSPTQGKFLQLLVQ----IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVR 115 (223)
T ss_dssp CSCCHHHHHHHHHHHH----HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred cccCHHHHHHHHHHHH----hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3455666655544332 235679999999999999999998 5799999999999999999999999965 9999
Q ss_pred EccHHHHHHHH
Q 002990 655 CAKAEDVMGSL 665 (860)
Q Consensus 655 ~gDae~~~~~l 665 (860)
.+|+.+.+..+
T Consensus 116 ~~d~~~~~~~~ 126 (223)
T 3duw_A 116 TGLALDSLQQI 126 (223)
T ss_dssp ESCHHHHHHHH
T ss_pred EcCHHHHHHHH
Confidence 99998877665
No 258
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.97 E-value=1.3e-09 Score=105.97 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=63.5
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccC---CceeEEEe
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIG---NKTLKVAN 236 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k---Gr~L~V~~ 236 (860)
...+|||+|||+.+++++|+++|+++ .|....+.+ ++++|||||+|.+.++|.+|++.|||..+. |++|+|..
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 45689999999999999999999999 455555544 456899999999999999999999998776 39999987
Q ss_pred c
Q 002990 237 V 237 (860)
Q Consensus 237 A 237 (860)
|
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 6
No 259
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.97 E-value=5.8e-10 Score=124.81 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--------------------------------------
Q 002990 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-------------------------------------- 623 (860)
Q Consensus 582 N~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-------------------------------------- 623 (860)
.....+.|...++.+++..++..|||+|||+|+|++.+|..+
T Consensus 176 ~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 255 (385)
T 3ldu_A 176 KAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE 255 (385)
T ss_dssp CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred CCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhcc
Confidence 334455666667777788888999999999999999998764
Q ss_pred --CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 624 --GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 624 --~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
.+|+|+|+++.|++.|+.|+..+|+. +++|.++|+.+
T Consensus 256 ~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~ 295 (385)
T 3ldu_A 256 SKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQ 295 (385)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGG
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 36999999999999999999999996 79999999754
No 260
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.96 E-value=3.7e-09 Score=102.91 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=61.3
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
+...+.+.+.+.++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+..+++. ++ ++++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence 3445556667778899999999999999999988 579999999999999999999999997 89 88888643
No 261
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.96 E-value=1.9e-09 Score=111.41 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHh--hCCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHH
Q 002990 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH--RVGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAE 659 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~--~~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae 659 (860)
......|...+. ..++.+|||+|||+|.+++.|++ ...+|+|||+++.+++.|++|++.+++. +++|+.+|+.
T Consensus 57 ~~~~~~l~~~~~----~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (232)
T 3ntv_A 57 RLTLDLIKQLIR----MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNAL 132 (232)
T ss_dssp HHHHHHHHHHHH----HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGG
T ss_pred HHHHHHHHHHHh----hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence 444444443332 34567999999999999999998 4579999999999999999999999995 8999999987
Q ss_pred HHHH
Q 002990 660 DVMG 663 (860)
Q Consensus 660 ~~~~ 663 (860)
+.++
T Consensus 133 ~~~~ 136 (232)
T 3ntv_A 133 EQFE 136 (232)
T ss_dssp GCHH
T ss_pred HHHH
Confidence 7554
No 262
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.96 E-value=6.9e-10 Score=115.58 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=55.5
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHc
Q 002990 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 579 FQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~----~~~VigVEis~~AIe~Ar~NA~~N 646 (860)
.+.....+..++..+...+....+.+|||+|||+|.+++.+++. ..+|+|||+++.|++.|+.|+..+
T Consensus 29 ~~~~~~la~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~ 100 (250)
T 1o9g_A 29 PAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL 100 (250)
T ss_dssp CCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 33445666677777776654446779999999999999999987 468999999999999999999876
No 263
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.96 E-value=1.2e-09 Score=109.42 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=65.5
Q ss_pred ccEEEeCCCc-ccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 002990 166 LSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (860)
Q Consensus 166 ~ki~VgnLP~-~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~ 242 (860)
.+|||+|||. .+++++|+++|+++| |..+++... .+|||||+|.++++|++|++.|||..+.|+.|+|..+.++..
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT-CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 4799999999 999999999999995 444444333 379999999999999999999999999999999998876543
No 264
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.95 E-value=1.1e-09 Score=109.60 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=67.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceeEEeec-cCCcceEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEecCCC
Q 002990 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVANVVPR 240 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~-~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k-Gr~L~V~~A~pk 240 (860)
.+...|||+|||..+++++|+++|+++|.....+.. ..++|||||+|.+.++|.+|++.|||..+. |+.|+|..|+|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 346679999999999999999999999743344444 446899999999999999999999999999 999999988764
No 265
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.95 E-value=1.6e-09 Score=110.60 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=57.4
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCC-------EEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVG-------MVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAED 660 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~-------~VigVEis~~AIe~Ar~NA~~Ng-----i~Nv~fi~gDae~ 660 (860)
.+.++.+|||+|||+|.+++.+++... +|+|||+++.+++.|++|+..++ ..++.|+.+|+.+
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 151 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQ 151 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGG
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHh
Confidence 356788999999999999999999875 99999999999999999999988 6789999999765
No 266
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.95 E-value=2.3e-09 Score=107.49 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=54.9
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.|+.|+..+++.+++|+++|+.+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 126 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE 126 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh
Confidence 3679999999999999999987 57999999999999999999999999889999998643
No 267
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.95 E-value=1.3e-09 Score=105.98 Aligned_cols=74 Identities=12% Similarity=0.294 Sum_probs=61.9
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cceeEEeecc------CCcceEEEEeCCHHHHHHHHHHHcCCccC---CceeEE
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKK------KGMTVGFVKFESVEQLKNAVEELEGISIG---NKTLKV 234 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~------r~~gFgFVtF~s~Eea~kAIe~LnG~~~k---Gr~L~V 234 (860)
..+|||+|||+.+++++|+++|+++ .|..+.+.+. +++|||||+|.++++|++|++.|||..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 4579999999999999999999999 4444555441 57899999999999999999999998876 567777
Q ss_pred EecC
Q 002990 235 ANVV 238 (860)
Q Consensus 235 ~~A~ 238 (860)
..+.
T Consensus 83 ~~~~ 86 (175)
T 3nmr_A 83 KPAD 86 (175)
T ss_dssp EECG
T ss_pred cccc
Confidence 7654
No 268
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=98.94 E-value=5.5e-09 Score=106.74 Aligned_cols=83 Identities=10% Similarity=0.177 Sum_probs=68.4
Q ss_pred cccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEE
Q 002990 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRF 653 (860)
Q Consensus 578 FFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~f 653 (860)
++++.......|...+. ..++.+|||||||+|.+++.+|+. ..+|+|||+++.+++.|++|++.+++. +++|
T Consensus 39 ~~~~~~~~~~~l~~l~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 114 (221)
T 3u81_A 39 AMNVGDAKGQIMDAVIR----EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTI 114 (221)
T ss_dssp GGGCCHHHHHHHHHHHH----HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred CcccCHHHHHHHHHHHH----hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEE
Confidence 35666776666655443 235679999999999999999985 469999999999999999999999996 5999
Q ss_pred EEccHHHHHHH
Q 002990 654 VCAKAEDVMGS 664 (860)
Q Consensus 654 i~gDae~~~~~ 664 (860)
+++|+.+.+..
T Consensus 115 ~~~d~~~~l~~ 125 (221)
T 3u81_A 115 LNGASQDLIPQ 125 (221)
T ss_dssp EESCHHHHGGG
T ss_pred EECCHHHHHHH
Confidence 99999886554
No 269
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.94 E-value=2.2e-09 Score=111.77 Aligned_cols=63 Identities=16% Similarity=0.338 Sum_probs=56.9
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHc--------CCCcEEEEEccHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEIN--------GIKNCRFVCAKAEDV 661 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~N--------gi~Nv~fi~gDae~~ 661 (860)
+.++.+|||+|||+|.+++.||+.. ..|+|||+++.+++.|++|++.+ ++.|+.|+++|+.+.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~ 119 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH
Confidence 3567899999999999999999885 48999999999999999999988 889999999998654
No 270
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.94 E-value=4e-09 Score=108.88 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEEcc
Q 002990 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK--NCRFVCAK 657 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~--Nv~fi~gD 657 (860)
+.... ++..+....+..++.+|||+|||+|..++.||+. ..+|++||+++.+++.|++|++.+|+. +++|+++|
T Consensus 39 ~~~~~-~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd 117 (221)
T 3dr5_A 39 EMTGQ-LLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR 117 (221)
T ss_dssp HHHHH-HHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC
T ss_pred HHHHH-HHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC
Confidence 44443 4444444544444569999999999999999986 469999999999999999999999996 79999999
Q ss_pred HHHHHHH
Q 002990 658 AEDVMGS 664 (860)
Q Consensus 658 ae~~~~~ 664 (860)
+.+++..
T Consensus 118 a~~~l~~ 124 (221)
T 3dr5_A 118 PLDVMSR 124 (221)
T ss_dssp HHHHGGG
T ss_pred HHHHHHH
Confidence 9886543
No 271
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.94 E-value=2.5e-09 Score=110.77 Aligned_cols=70 Identities=29% Similarity=0.384 Sum_probs=61.7
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHc-CCCcEEEEEccHHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEIN-GIKNCRFVCAKAED 660 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~N-gi~Nv~fi~gDae~ 660 (860)
..+...+.+.++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++|++.+ |..++.++.+|+.+
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE 159 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence 34555667788899999999999999999988 579999999999999999999998 88899999998643
No 272
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=4.6e-09 Score=109.81 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=66.8
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEE
Q 002990 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFV 654 (860)
Q Consensus 579 FQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi 654 (860)
+++.......|...+. ..++.+|||+|||+|..++.|++. ..+|+|||+++.+++.|++|++.+|+. +++|+
T Consensus 45 ~~~~~~~~~~l~~l~~----~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~ 120 (248)
T 3tfw_A 45 HDVAANQGQFLALLVR----LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLR 120 (248)
T ss_dssp CCCCHHHHHHHHHHHH----HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred cccCHHHHHHHHHHHh----hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3455555555443332 345689999999999999999987 579999999999999999999999996 79999
Q ss_pred EccHHHHHHH
Q 002990 655 CAKAEDVMGS 664 (860)
Q Consensus 655 ~gDae~~~~~ 664 (860)
.+|+.+.+..
T Consensus 121 ~~d~~~~l~~ 130 (248)
T 3tfw_A 121 EGPALQSLES 130 (248)
T ss_dssp ESCHHHHHHT
T ss_pred EcCHHHHHHh
Confidence 9999886553
No 273
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.93 E-value=2.2e-09 Score=103.24 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=62.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCce--eEEEe
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKT--LKVAN 236 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~--L~V~~ 236 (860)
...+|+|+|||..+++++|+++|+++| |....+.. ++++|||||+|.+.++|.+|++.|||..+.|+. |+|..
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 456799999999999999999999994 55555443 356899999999999999999999999999975 77765
Q ss_pred c
Q 002990 237 V 237 (860)
Q Consensus 237 A 237 (860)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 274
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.93 E-value=1.4e-09 Score=110.38 Aligned_cols=73 Identities=23% Similarity=0.230 Sum_probs=62.6
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 166 ~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
.+|||+|||+.+++++|+++|+++ .|..+.+.+ ++++|||||+|.++|+|++|++.++ ..|+|+.|+|..++.
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 469999999999999999999999 455555554 5678999999999999999998775 589999999987654
No 275
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.93 E-value=1.2e-09 Score=116.03 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=67.7
Q ss_pred CccccEEEeCCCcc-cCHHHHHHHhhhc-cceeEEeec-----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 163 DVELSKCLVHLPRK-WHSDNLKKFLADH-GILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 163 ~~~~ki~VgnLP~~-~~~~~Lkk~l~~~-~v~~~~ik~-----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
.....|||+|||+. +++++|+++|+++ .|..+.+.+ ++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 34568999999999 9999999999999 455555544 456899999999999999999 999999999999999
Q ss_pred ecCCCC
Q 002990 236 NVVPRS 241 (860)
Q Consensus 236 ~A~pk~ 241 (860)
.|+||+
T Consensus 287 ~a~~k~ 292 (292)
T 2ghp_A 287 LADKKP 292 (292)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998874
No 276
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.93 E-value=2.2e-09 Score=113.09 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=66.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~p 239 (860)
.....+|||+|||+.+++++|+++|+++|.. ..+...+++|||||+|.+.++|++|++.|||..+.|+.|+|..+.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEP-SEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 4456689999999999999999999999432 2334456789999999999999999999999999999999998854
No 277
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.92 E-value=2.4e-09 Score=113.30 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=64.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
+..+|||+|||+.+++++|+++|+++||..+ +.++++|||||+|.++++|++|++.|||..+.|+.|+|..+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYELKYC--FVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSCEEEE--EEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCEEE--EEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4467999999999999999999999995444 44778999999999999999999999999999999999865
No 278
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.92 E-value=2.3e-09 Score=113.40 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=69.7
Q ss_pred CccccEEEeCCCccc-CHHHHHHHhhhcc-ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 163 DVELSKCLVHLPRKW-HSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 163 ~~~~ki~VgnLP~~~-~~~~Lkk~l~~~~-v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
.....|||+|||..+ ++++|+++|+++| |..+.+.. ++++|||||+|.+.++|.+|++.|||..+.|+.|+|..|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 345679999999996 9999999999994 55555555 467899999999999999999999999999999999999
Q ss_pred CCCCc
Q 002990 238 VPRSF 242 (860)
Q Consensus 238 ~pk~~ 242 (860)
.|+..
T Consensus 262 ~~~~~ 266 (284)
T 3smz_A 262 APGPP 266 (284)
T ss_dssp CSSSC
T ss_pred cCCCc
Confidence 87654
No 279
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.91 E-value=2.8e-09 Score=98.06 Aligned_cols=78 Identities=17% Similarity=0.051 Sum_probs=63.7
Q ss_pred ccccEEEeCCCc--c---cCHHHHHHHhhhc-cceeEEeec-----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 002990 164 VELSKCLVHLPR--K---WHSDNLKKFLADH-GILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (860)
Q Consensus 164 ~~~ki~VgnLP~--~---~~~~~Lkk~l~~~-~v~~~~ik~-----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L 232 (860)
+.--|+|+||.. . -.+++|++.|++| .|..+.+.+ ++++|||||+|.++++|++||+.|||..|.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 344599999963 2 2589999999999 455555554 3578999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 002990 233 KVANVVPRS 241 (860)
Q Consensus 233 ~V~~A~pk~ 241 (860)
+|..|.+..
T Consensus 87 ~v~~a~~~~ 95 (105)
T 2pe8_A 87 KACFYNLDK 95 (105)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCHHH
Confidence 999986543
No 280
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.91 E-value=1.2e-09 Score=122.68 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC----------------------------------------
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---------------------------------------- 624 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~---------------------------------------- 624 (860)
..+.|...++.+++..++..|||++||+|+|++.+|..+.
T Consensus 185 l~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred CcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 3455555566667778889999999999999999987643
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 625 MVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 625 ~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
+|+|+|+++.|++.|+.|++.+|+. +++|+++|+.+
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~ 301 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVAD 301 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGG
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHh
Confidence 4999999999999999999999996 59999999754
No 281
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.90 E-value=3.9e-09 Score=111.53 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=65.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEecC
Q 002990 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVANVV 238 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~k-Gr~L~V~~A~ 238 (860)
..+...|||+|||..+++++|+++|+++ .|..+++...+ +|||||+|.+.++|.+|++.|||+.+. |+.|+|..|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3445679999999999999999999999 45555544332 599999999999999999999999999 9999998874
No 282
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1e-09 Score=104.68 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=60.7
Q ss_pred ccEEEeCC----CcccCHHHHHHHhhhc-cceeEEeec----cCCcceEEEEeCC----HHH----HHHHHH--HHcCCc
Q 002990 166 LSKCLVHL----PRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFES----VEQ----LKNAVE--ELEGIS 226 (860)
Q Consensus 166 ~ki~VgnL----P~~~~~~~Lkk~l~~~-~v~~~~ik~----~r~~gFgFVtF~s----~Ee----a~kAIe--~LnG~~ 226 (860)
-+|||+|| |+.+++.+|+.+|++| .|..+.+.. ++++|||||+|.+ +++ |.+||+ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 9999999999999999 556666655 6889999999996 444 899999 899999
Q ss_pred cCCceeEEEe
Q 002990 227 IGNKTLKVAN 236 (860)
Q Consensus 227 ~kGr~L~V~~ 236 (860)
+.|++|+|..
T Consensus 83 I~Gr~irV~l 92 (136)
T 2j8a_A 83 IMGFKFEVIL 92 (136)
T ss_dssp ETTEEEEEEE
T ss_pred ecCcEEEEEE
Confidence 9999999973
No 283
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.89 E-value=4.3e-09 Score=111.31 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=60.9
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
.+..++.+.++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++|++.+++ .++.++.+|+.+
T Consensus 103 ~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 175 (277)
T 1o54_A 103 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 175 (277)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 3455567788899999999999999999987 47999999999999999999999998 689999998653
No 284
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.89 E-value=3.2e-09 Score=118.88 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC----------------------------------------E
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG----------------------------------------M 625 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~----------------------------------------~ 625 (860)
.+.|...++.+++..++..|||++||+|+|.+.+|..+. +
T Consensus 179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 258 (384)
T 3ldg_A 179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD 258 (384)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence 345555556666778889999999999999999987643 4
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 626 VIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 626 VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
|+|+|+++.|++.|++|++.+|+.+ ++|+++|+.+
T Consensus 259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~ 294 (384)
T 3ldg_A 259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQD 294 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGG
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHH
Confidence 9999999999999999999999964 9999999754
No 285
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.89 E-value=8.6e-10 Score=117.16 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=57.5
Q ss_pred HHhhhccCCCC--CcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHH-------HcC-C-CcEEEEEccHHH
Q 002990 592 LGGDWADLGPD--TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE-------ING-I-KNCRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~l~~~--~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~-------~Ng-i-~Nv~fi~gDae~ 660 (860)
.+.+++++.++ .+|||+|||+|.+++.||+.+.+|++||+++.+++.++.|++ .|+ + .+++++++|+.+
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~ 156 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence 34455666677 899999999999999999998899999999987666666543 344 5 689999999987
Q ss_pred HHH
Q 002990 661 VMG 663 (860)
Q Consensus 661 ~~~ 663 (860)
++.
T Consensus 157 ~L~ 159 (258)
T 2oyr_A 157 ALT 159 (258)
T ss_dssp HST
T ss_pred HHH
Confidence 643
No 286
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.88 E-value=4.8e-09 Score=114.93 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=53.5
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhC-------CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRV-------GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~-------~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
...++.+|||+|||+|.+++.+++.. ..|+|+|+++.+++.|+.|+..+|+ ++.++++|+
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~ 193 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDG 193 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCT
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCC
Confidence 44567899999999999999998764 6899999999999999999999998 789999885
No 287
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.88 E-value=8.5e-09 Score=108.52 Aligned_cols=70 Identities=27% Similarity=0.352 Sum_probs=60.9
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHc-C--CCcEEEEEccHHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEIN-G--IKNCRFVCAKAED 660 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~N-g--i~Nv~fi~gDae~ 660 (860)
..+...+.+.++.+|||+|||+|.+++.|++. ..+|+++|+++.+++.|++|+..+ | ..++.++.+|+.+
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~ 164 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 164 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence 34555566788899999999999999999986 579999999999999999999988 6 6789999998654
No 288
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.87 E-value=2.1e-09 Score=103.91 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=63.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeEEeec----cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v~~~~ik~----~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
+..+|||+|||+.+++++|+++|+++| |..+.+.+ ++++|||||+|.++++|++|++ ++..+.|+.|.|..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 345799999999999999999999994 44455443 4678999999999999999999 4788999999988775
Q ss_pred CC
Q 002990 239 PR 240 (860)
Q Consensus 239 pk 240 (860)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 289
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=5.1e-10 Score=94.78 Aligned_cols=35 Identities=37% Similarity=0.792 Sum_probs=30.7
Q ss_pred CCcccccccccccccCCCCCCCCCCCCcCccccCCC
Q 002990 78 HPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIR 113 (860)
Q Consensus 78 ~~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr~~ 113 (860)
.+..|++||.+| ..|.|+||++|+||||++|||..
T Consensus 15 ~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 15 FPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHH
T ss_pred CCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhhH
Confidence 344588999999 66899999999999999999973
No 290
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.86 E-value=2.9e-09 Score=108.72 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=60.4
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+..+.+.+.+.++.+|||+|||+|.++..++..+.+|+|||+++.+++.|++++..++ ++.++++|+.+
T Consensus 59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~ 127 (231)
T 1vbf_A 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTL 127 (231)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGG
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccc
Confidence 4445555667788899999999999999999998999999999999999999998877 89999998754
No 291
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.85 E-value=6.3e-09 Score=115.49 Aligned_cols=60 Identities=7% Similarity=0.045 Sum_probs=54.7
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+|||+| |+|.+++.++... .+|+|||+++.|++.|++|++.+|+.+++|+++|+.+
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~ 232 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRK 232 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTS
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhh
Confidence 3578999999 9999999999874 5999999999999999999999999899999999654
No 292
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.84 E-value=3.1e-08 Score=103.83 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=70.6
Q ss_pred CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEE
Q 002990 577 AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGI-KNCR 652 (860)
Q Consensus 577 sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~ 652 (860)
.+.++.......|...+. ..+..+|||+|||+|..++.+++. ..+|++||+++.+++.|++|++.+|+ .+++
T Consensus 59 ~~~~~~~~~~~ll~~l~~----~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~ 134 (247)
T 1sui_A 59 NIMTTSADEGQFLSMLLK----LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKID 134 (247)
T ss_dssp GGGSCCHHHHHHHHHHHH----HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEE
T ss_pred CCCCcCHHHHHHHHHHHH----hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeE
Confidence 356677777765544332 234579999999999999999987 47999999999999999999999999 4799
Q ss_pred EEEccHHHHHHHHh
Q 002990 653 FVCAKAEDVMGSLL 666 (860)
Q Consensus 653 fi~gDae~~~~~l~ 666 (860)
|+.+|+.+.++.+.
T Consensus 135 ~~~gda~~~l~~l~ 148 (247)
T 1sui_A 135 FREGPALPVLDEMI 148 (247)
T ss_dssp EEESCHHHHHHHHH
T ss_pred EEECCHHHHHHHHH
Confidence 99999998877653
No 293
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=98.83 E-value=6.5e-09 Score=108.66 Aligned_cols=87 Identities=23% Similarity=0.166 Sum_probs=72.7
Q ss_pred CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cE
Q 002990 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NC 651 (860)
Q Consensus 576 ~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv 651 (860)
..++++.......|...+. ..+..+|||+|||+|..++.||+. ..+|++||+++.+++.|++|++.+|+. ++
T Consensus 39 ~~~~~i~~~~~~~l~~l~~----~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i 114 (242)
T 3r3h_A 39 LANMQVAPEQAQFMQMLIR----LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKI 114 (242)
T ss_dssp GGGTSCCHHHHHHHHHHHH----HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTE
T ss_pred CCCCccCHHHHHHHHHHHh----hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence 3457777877777765543 234679999999999999999985 469999999999999999999999995 89
Q ss_pred EEEEccHHHHHHHHh
Q 002990 652 RFVCAKAEDVMGSLL 666 (860)
Q Consensus 652 ~fi~gDae~~~~~l~ 666 (860)
+|+.+|+.+.+..+.
T Consensus 115 ~~~~gda~~~l~~~~ 129 (242)
T 3r3h_A 115 KLRLGPALDTLHSLL 129 (242)
T ss_dssp EEEESCHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHh
Confidence 999999999877654
No 294
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.81 E-value=1.8e-08 Score=105.09 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=55.5
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHH------cCCCcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEI------NGIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~------Ngi~Nv~fi~gDae~~~~ 663 (860)
.++.+|||||||+|.+++.||+.. ..|+|||+++.|++.|+.+++. +++.|+.|+++|+.+.++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~ 116 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLP 116 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHH
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhh
Confidence 456789999999999999999874 6899999999999999999875 577899999999876444
No 295
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.81 E-value=3.7e-09 Score=108.30 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=55.1
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC--------CEEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV--------GMVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~--------~~VigVEis~~AIe~Ar~NA~~Ng-----i~Nv~fi~gDae~ 660 (860)
+.++.+|||+|||+|.++..|++.. .+|+|||+++.+++.|++|+..++ ..++.++.+|+.+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 156 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK 156 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc
Confidence 5678899999999999999999853 499999999999999999999877 6789999998653
No 296
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=98.80 E-value=1.1e-08 Score=105.09 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEc
Q 002990 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCA 656 (860)
Q Consensus 580 QvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~g 656 (860)
.........+...+. ..++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++|+..+|+. ++.++.+
T Consensus 37 ~~~~~~~~~l~~~~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 112 (233)
T 2gpy_A 37 IMDLLGMESLLHLLK----MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG 112 (233)
T ss_dssp CCCHHHHHHHHHHHH----HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred CcCHHHHHHHHHHHh----ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 455566655554432 345679999999999999999988 479999999999999999999999985 6999999
Q ss_pred cHHHHHH
Q 002990 657 KAEDVMG 663 (860)
Q Consensus 657 Dae~~~~ 663 (860)
|+.+.+.
T Consensus 113 d~~~~~~ 119 (233)
T 2gpy_A 113 DALQLGE 119 (233)
T ss_dssp CGGGSHH
T ss_pred CHHHHHH
Confidence 9876543
No 297
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.79 E-value=8e-09 Score=101.74 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.|++.+... . .++.+|||+|||+|.+++.|++.+ +|+|||+++.|++. ..+++|+++|+.+
T Consensus 9 ~~~~l~~~l~~~-~-~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~---------~~~~~~~~~d~~~ 72 (170)
T 3q87_B 9 DTYTLMDALERE-G-LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES---------HRGGNLVRADLLC 72 (170)
T ss_dssp HHHHHHHHHHHH-T-CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT---------CSSSCEEECSTTT
T ss_pred cHHHHHHHHHhh-c-CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc---------ccCCeEEECChhh
Confidence 445555553221 1 356699999999999999999999 99999999999987 3568899998643
No 298
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.79 E-value=7e-09 Score=106.10 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=56.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-c--eeEEeec--cCCcceEEEEeCCHHHHHHHHHHHcCCccCCc
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG-I--LYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNK 230 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~-v--~~~~ik~--~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr 230 (860)
+...|||+|||+.+++++|+++|+++| | ..+++.. ++++|||||+|.+.|+|.+||+.|||+.+.|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 345799999999999999999999995 3 3344333 24469999999999999999999999999997
No 299
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.79 E-value=2.6e-09 Score=98.06 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=55.2
Q ss_pred EeCCCcccCHHHHHHHh------------hhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 002990 170 LVHLPRKWHSDNLKKFL------------ADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (860)
Q Consensus 170 VgnLP~~~~~~~Lkk~l------------~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~ 233 (860)
+.|||+.+++++|++.| ++| .|..+.+.+ ++++|||||+|.++++|++|++.|||..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888887777666 888 455555554 35789999999999999999999999999999999
Q ss_pred EEec
Q 002990 234 VANV 237 (860)
Q Consensus 234 V~~A 237 (860)
|..+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8754
No 300
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.79 E-value=9.7e-09 Score=109.05 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=65.1
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc--ceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADHG--ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~~--v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
...+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|.+|++.|||..+.|+.|+|..|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 456899999999999999999999997 33334333 3578999999999999999999999999999999999887
Q ss_pred CCC
Q 002990 239 PRS 241 (860)
Q Consensus 239 pk~ 241 (860)
|+.
T Consensus 196 ~~~ 198 (292)
T 2ghp_A 196 PLE 198 (292)
T ss_dssp CC-
T ss_pred CCc
Confidence 653
No 301
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.78 E-value=4.5e-08 Score=101.68 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=69.6
Q ss_pred cccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEE
Q 002990 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRF 653 (860)
Q Consensus 578 FFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~f 653 (860)
+.++.......|...+. ..+..+|||+|||+|..++.+++. ..+|++||+++.+++.|++|++.+|+. ++++
T Consensus 51 ~~~~~~~~~~~l~~l~~----~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 126 (237)
T 3c3y_A 51 YMSTSPLAGQLMSFVLK----LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF 126 (237)
T ss_dssp GGSCCHHHHHHHHHHHH----HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred CCCcCHHHHHHHHHHHH----hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 45566666655544332 235679999999999999999987 479999999999999999999999995 6999
Q ss_pred EEccHHHHHHHHh
Q 002990 654 VCAKAEDVMGSLL 666 (860)
Q Consensus 654 i~gDae~~~~~l~ 666 (860)
+.+|+.+.+..+.
T Consensus 127 ~~gda~~~l~~l~ 139 (237)
T 3c3y_A 127 IESDAMLALDNLL 139 (237)
T ss_dssp EESCHHHHHHHHH
T ss_pred EEcCHHHHHHHHH
Confidence 9999999877653
No 302
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.78 E-value=3.8e-08 Score=99.59 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=63.2
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-----cE
Q 002990 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-----NC 651 (860)
Q Consensus 579 FQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-----Nv 651 (860)
|+.........++.+.+++...++.+|||+|||+|.++..|++.. .+|+|||+++.+++.|++++..+++. ++
T Consensus 7 ~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v 86 (219)
T 3jwg_A 7 TEKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI 86 (219)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE
T ss_pred CCcCCcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcce
Confidence 333344445555556666555677899999999999999999876 69999999999999999999888875 79
Q ss_pred EEEEccH
Q 002990 652 RFVCAKA 658 (860)
Q Consensus 652 ~fi~gDa 658 (860)
+|+++|+
T Consensus 87 ~~~~~d~ 93 (219)
T 3jwg_A 87 SLFQSSL 93 (219)
T ss_dssp EEEECCS
T ss_pred EEEeCcc
Confidence 9999985
No 303
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.78 E-value=1.6e-08 Score=102.23 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=56.0
Q ss_pred CCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVM 662 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~~~ 662 (860)
++.+|||+|||+|..++.+++. ..+|++||+++.+++.|++|++.+++. +++|+.+|+.+.+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 121 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIA 121 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHh
Confidence 4578999999999999999987 469999999999999999999999985 5999999987754
No 304
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.77 E-value=5e-08 Score=102.54 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=58.0
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
..++.+|||+|||+|.+++.||.. ..+|+|||+++.+++.|++|++.+|+.|++|+++|++++
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~ 142 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVL 142 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHh
Confidence 356789999999999999999987 469999999999999999999999999999999999874
No 305
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.76 E-value=3.4e-08 Score=102.05 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEE
Q 002990 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFVC 655 (860)
Q Consensus 580 QvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~ 655 (860)
+..+.....|...+. ..++.+|||+|||+|.+++.+++. ..+|++||+++.+++.|++|+..+|+.+ +.|+.
T Consensus 43 ~~~~~~~~~l~~l~~----~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 118 (239)
T 2hnk_A 43 QISPEEGQFLNILTK----ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL 118 (239)
T ss_dssp SCCHHHHHHHHHHHH----HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred ccCHHHHHHHHHHHH----hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 456666666555432 345679999999999999999987 5799999999999999999999999965 99999
Q ss_pred ccHHHHHHHH
Q 002990 656 AKAEDVMGSL 665 (860)
Q Consensus 656 gDae~~~~~l 665 (860)
+|+.+.+..+
T Consensus 119 ~d~~~~~~~~ 128 (239)
T 2hnk_A 119 GSALETLQVL 128 (239)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9998877655
No 306
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.76 E-value=1.3e-08 Score=110.31 Aligned_cols=72 Identities=10% Similarity=0.178 Sum_probs=64.3
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
|+..+++++.+.++.+|||+|||+|.+++.+++.+ .+|+|||+++.|++.|++|+..+| .+++|+++|+.++
T Consensus 14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l 87 (301)
T 1m6y_A 14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA 87 (301)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHH
Confidence 45566677777888999999999999999999884 799999999999999999999888 7999999998764
No 307
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.76 E-value=2.1e-08 Score=107.46 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=60.7
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae 659 (860)
..+.+.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++..+++ .+++++++|+.
T Consensus 18 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~ 87 (285)
T 1zq9_A 18 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL 87 (285)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred HHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEccee
Confidence 3444555677888999999999999999999999999999999999999999987777 68999999864
No 308
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.73 E-value=1e-07 Score=98.49 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=68.1
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEE
Q 002990 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIK-NCRFV 654 (860)
Q Consensus 579 FQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi 654 (860)
.+++......|...+. ..++.+|||+|||+|..++.+++.. .+|++||+++.+++.|++|++.+|+. +++|+
T Consensus 54 ~~~~~~~~~~l~~l~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~ 129 (232)
T 3cbg_A 54 MQISPEQAQFLGLLIS----LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR 129 (232)
T ss_dssp GSCCHHHHHHHHHHHH----HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred cCcCHHHHHHHHHHHH----hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3566776666554432 2345789999999999999999873 59999999999999999999999995 69999
Q ss_pred EccHHHHHHHH
Q 002990 655 CAKAEDVMGSL 665 (860)
Q Consensus 655 ~gDae~~~~~l 665 (860)
.+|+.+.+..+
T Consensus 130 ~~d~~~~l~~l 140 (232)
T 3cbg_A 130 LGPALATLEQL 140 (232)
T ss_dssp ESCHHHHHHHH
T ss_pred EcCHHHHHHHH
Confidence 99998877654
No 309
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.72 E-value=8e-08 Score=102.57 Aligned_cols=77 Identities=18% Similarity=0.133 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
......+..+.+.+.+.++.+|||+|||+|.+++.+++. ..+|+|||+++.+++.|++++..+|+. +++|+.+|+.+
T Consensus 55 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (302)
T 3hem_A 55 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE 133 (302)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH
Confidence 334445667777778888999999999999999999988 789999999999999999999999996 89999999754
No 310
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.72 E-value=2e-08 Score=110.78 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCccccEEEeC--CCcccCHHHHHHHhhhccceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCcc---CCc--eeEE
Q 002990 162 QDVELSKCLVH--LPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI---GNK--TLKV 234 (860)
Q Consensus 162 ~~~~~ki~Vgn--LP~~~~~~~Lkk~l~~~~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~---kGr--~L~V 234 (860)
..+.-.|||+| |++.+++++|+++|++||-. ..+...++||||||+|.+.|+|++||+.|||.++ .|+ .|.+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V-~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLV-DALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCE-EEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCe-EEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 45566899999 68999999999999999533 3445556889999999999999999999999987 345 6888
Q ss_pred EecC
Q 002990 235 ANVV 238 (860)
Q Consensus 235 ~~A~ 238 (860)
+-++
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 8774
No 311
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.71 E-value=3e-08 Score=108.68 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=70.8
Q ss_pred ECCeEEEEcCCCcccCCHHH-HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHH
Q 002990 566 ISNLRFCISPTAFFQVNTLA-AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 566 i~gl~f~isp~sFFQvN~~~-ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~N 642 (860)
+.++.+...|+.|++.+... ++.|+ +.+....+.+|||+|||+|.+++.+++.. .+|+|||+++.|++.|++|
T Consensus 164 ~~~~~~~~~~gvf~~~~~d~~~~~ll----~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~ 239 (343)
T 2pjd_A 164 VDGLTVKTLPGVFSRDGLDVGSQLLL----STLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRAT 239 (343)
T ss_dssp ETTEEEEECTTCTTSSSCCHHHHHHH----HHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHH
T ss_pred ccceEEEecCCccCCCCCcHHHHHHH----HhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 36788999999999887543 33333 33333456789999999999999999886 4899999999999999999
Q ss_pred HHHcCCCcEEEEEccH
Q 002990 643 AEINGIKNCRFVCAKA 658 (860)
Q Consensus 643 A~~Ngi~Nv~fi~gDa 658 (860)
+..+++. +.++.+|+
T Consensus 240 ~~~~~~~-~~~~~~d~ 254 (343)
T 2pjd_A 240 LAANGVE-GEVFASNV 254 (343)
T ss_dssp HHHTTCC-CEEEECST
T ss_pred HHHhCCC-CEEEEccc
Confidence 9999885 67777774
No 312
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.71 E-value=3.3e-08 Score=118.63 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-----------------------------------------
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV----------------------------------------- 623 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~----------------------------------------- 623 (860)
..+.|...++.+++..++..|||++||+|+|.+.+|..+
T Consensus 174 l~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~ 253 (703)
T 3v97_A 174 IKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA 253 (703)
T ss_dssp SCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence 334455555566677788899999999999999988653
Q ss_pred ---CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 624 ---GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 624 ---~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
..|+|+|+++.|++.|+.|++.+|+.+ ++|.++|+.+
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~ 294 (703)
T 3v97_A 254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQ 294 (703)
T ss_dssp HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGG
T ss_pred cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 479999999999999999999999975 9999999754
No 313
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.70 E-value=2.4e-08 Score=101.70 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=54.8
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAE 659 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ng-----i~Nv~fi~gDae 659 (860)
+.++.+|||+|||+|.++..|++.. .+|+|+|+++.+++.|++|+..++ ..++.++++|+.
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 143 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR 143 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc
Confidence 5678899999999999999999874 599999999999999999999876 468999999864
No 314
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.69 E-value=2.2e-08 Score=105.86 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=56.7
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
...++.+|||+|||+|.+++.|++.+.+|+|||+++.+++.|++++..+++ +++|+++|+.+
T Consensus 117 ~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 178 (286)
T 3m70_A 117 KIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINA 178 (286)
T ss_dssp HHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGG
T ss_pred hccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEecccc
Confidence 334678999999999999999999988999999999999999999999998 89999999643
No 315
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.69 E-value=3.8e-08 Score=90.41 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=60.0
Q ss_pred cEEEeCC--CcccC--------HHHHHHHhhhc-cceeEEeecc------CCcceEEEEeCCHHHHHHHHHHHcCCccCC
Q 002990 167 SKCLVHL--PRKWH--------SDNLKKFLADH-GILYKSAKKK------KGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (860)
Q Consensus 167 ki~VgnL--P~~~~--------~~~Lkk~l~~~-~v~~~~ik~~------r~~gFgFVtF~s~Eea~kAIe~LnG~~~kG 229 (860)
-|+|.|+ |.... .++|++.|++| .|..+.+.+. +++|||||+|.++++|++||+.|||..|.|
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~G 86 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN 86 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4788888 54544 36899999999 4555555441 468999999999999999999999999999
Q ss_pred ceeEEEecCCC
Q 002990 230 KTLKVANVVPR 240 (860)
Q Consensus 230 r~L~V~~A~pk 240 (860)
|.|+|..+.+.
T Consensus 87 R~i~v~~~~~~ 97 (105)
T 3v4m_A 87 RVVVTKYCDPD 97 (105)
T ss_dssp EECEEEEECHH
T ss_pred CEEEEEEeCHH
Confidence 99999887543
No 316
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.67 E-value=3.6e-08 Score=103.74 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=64.4
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeEEeec---cCCcceEEEEeCCHHHHHHHHHHHcCCcc-C---CceeEEE
Q 002990 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISI-G---NKTLKVA 235 (860)
Q Consensus 164 ~~~ki~VgnLP~~~~~~~Lkk~l~~~-~v~~~~ik~---~r~~gFgFVtF~s~Eea~kAIe~LnG~~~-k---Gr~L~V~ 235 (860)
++.+|||+|||..+++++|+++|+++ .|..+.+.. ++++|||||+|.+.++|.+||+.|||..+ . |+.|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 35689999999999999999999999 444444443 56789999999999999999999965444 3 8999999
Q ss_pred ecCCCC
Q 002990 236 NVVPRS 241 (860)
Q Consensus 236 ~A~pk~ 241 (860)
.+.+..
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 887653
No 317
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.67 E-value=4.5e-08 Score=114.16 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=61.6
Q ss_pred CCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--------------------CEEEEEeCCHH
Q 002990 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--------------------GMVIGIEMNAS 634 (860)
Q Consensus 575 p~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--------------------~~VigVEis~~ 634 (860)
.+.||.+ ...+..|+ +++.+.++.+|||+|||+|.|.+.+++.. ..++|+|+++.
T Consensus 148 ~G~fyTP-~~iv~~mv----~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~ 222 (541)
T 2ar0_A 148 AGQYFTP-RPLIKTII----HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 222 (541)
T ss_dssp --CCCCC-HHHHHHHH----HHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred CCeeeCC-HHHHHHHH----HHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence 4667744 34444444 44456678899999999999999987642 37999999999
Q ss_pred HHHHHHHHHHHcCCCc-----EEEEEccHH
Q 002990 635 AVSDAHRNAEINGIKN-----CRFVCAKAE 659 (860)
Q Consensus 635 AIe~Ar~NA~~Ngi~N-----v~fi~gDae 659 (860)
+++.|+.|+..+|+.+ +.++++|+.
T Consensus 223 ~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL 252 (541)
T 2ar0_A 223 TRRLALMNCLLHDIEGNLDHGGAIRLGNTL 252 (541)
T ss_dssp HHHHHHHHHHTTTCCCBGGGTBSEEESCTT
T ss_pred HHHHHHHHHHHhCCCccccccCCeEeCCCc
Confidence 9999999999999876 788888853
No 318
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.66 E-value=5.8e-08 Score=105.71 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=57.5
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHc-------CC----CcEEEEEccH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEIN-------GI----KNCRFVCAKA 658 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~N-------gi----~Nv~fi~gDa 658 (860)
++..+.+.++.+|||+|||+|.+++.|++.. .+|+|+|+++.+++.|++|+... ++ .+++|+.+|+
T Consensus 97 ~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~ 176 (336)
T 2b25_A 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 176 (336)
T ss_dssp HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence 3444467788999999999999999999874 79999999999999999999863 32 5899999987
Q ss_pred HH
Q 002990 659 ED 660 (860)
Q Consensus 659 e~ 660 (860)
.+
T Consensus 177 ~~ 178 (336)
T 2b25_A 177 SG 178 (336)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 319
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.66 E-value=1.3e-08 Score=103.14 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=53.4
Q ss_pred hccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHH----HHHHcCCCcEEEEEccHHH
Q 002990 596 WADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHR----NAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 596 ~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~----NA~~Ngi~Nv~fi~gDae~ 660 (860)
++.+.++.+|||+|||+|.+++.|++. ..+|+|||+++.|++.+.+ ++...++.|+.|+++|+++
T Consensus 22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 92 (218)
T 3mq2_A 22 QLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER 92 (218)
T ss_dssp HHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT
T ss_pred HhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh
Confidence 334667889999999999999999998 5799999999998886443 4445678899999999754
No 320
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.66 E-value=3.6e-08 Score=99.38 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 581 vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+....+.+...+..++...++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++..++ +++|+++|+.+
T Consensus 31 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~ 108 (216)
T 3ofk_A 31 DNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQ 108 (216)
T ss_dssp TCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTT
T ss_pred cCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhh
Confidence 3455555555666666666778899999999999999999998899999999999999999987644 89999998643
No 321
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.66 E-value=4.9e-08 Score=108.57 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
....+.+.+.....+.++.+|||||||+|.+++.+++.+. +|+|||++ .|++.|+++++.+++.+ ++|+++|+++
T Consensus 47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 123 (376)
T 3r0q_C 47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED 123 (376)
T ss_dssp HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh
Confidence 3444455565656677889999999999999999999864 99999999 99999999999999964 9999999754
No 322
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.65 E-value=2.3e-08 Score=105.42 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=57.6
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+...+.+.+.+.++.+|||+|||+|.++..|++. +.+|+|||+++.+++.|++| +..|++++++|+.+
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~ 87 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GDERLEVINEDASK 87 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTT
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhh
Confidence 3444555666778889999999999999999998 58999999999999999987 34689999999754
No 323
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.65 E-value=1.9e-07 Score=105.05 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=65.5
Q ss_pred cCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHH-------H
Q 002990 574 SPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA-------E 644 (860)
Q Consensus 574 sp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA-------~ 644 (860)
++..|-..+...... +++.+.+.++.+|||||||+|.+++.+|... .+|+|||+++.+++.|++|+ +
T Consensus 150 s~~vYGEt~~~~i~~----il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~ 225 (438)
T 3uwp_A 150 SPEVYGETSFDLVAQ----MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMK 225 (438)
T ss_dssp CGGGGGGTHHHHHHH----HHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCHHHHHH----HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444 4455678889999999999999999999753 47999999999999999875 4
Q ss_pred HcCC--CcEEEEEccHHHH
Q 002990 645 INGI--KNCRFVCAKAEDV 661 (860)
Q Consensus 645 ~Ngi--~Nv~fi~gDae~~ 661 (860)
.+|+ .+|+|++||+.+.
T Consensus 226 ~~Gl~~~rVefi~GD~~~l 244 (438)
T 3uwp_A 226 WYGKKHAEYTLERGDFLSE 244 (438)
T ss_dssp HHTBCCCEEEEEECCTTSH
T ss_pred HhCCCCCCeEEEECcccCC
Confidence 5676 6899999998763
No 324
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.63 E-value=6.3e-08 Score=100.90 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=57.6
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAE 659 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae 659 (860)
.+.+++ .++.+|||+|||+|.+++.||+.+ .+|+|+|+++.+++.|++|++.||+. +++++.+|+.
T Consensus 8 ~l~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l 76 (225)
T 3kr9_A 8 LVASFV--SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGL 76 (225)
T ss_dssp HHHTTS--CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGG
T ss_pred HHHHhC--CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchh
Confidence 344443 467899999999999999999975 58999999999999999999999996 5999999964
No 325
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.63 E-value=5.9e-08 Score=102.27 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=58.3
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
.+.+++ .++.+|||+|||+|.+++.|++.. .+|+|+|+++.+++.|++|++.||+.+ ++++++|+.+
T Consensus 14 ~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~ 83 (244)
T 3gnl_A 14 KVASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA 83 (244)
T ss_dssp HHHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred HHHHhC--CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhh
Confidence 345554 467899999999999999999975 589999999999999999999999965 9999999644
No 326
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=6.8e-08 Score=88.27 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=54.1
Q ss_pred cccCHHHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 002990 175 RKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (860)
Q Consensus 175 ~~~~~~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~ 242 (860)
..+++++|+++|++|| |..+.+. ++++|||||+|.+.++|++||+.++| +.|+.|+|..|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 3578999999999994 5444443 67899999999999999999999666 5799999999877643
No 327
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.62 E-value=1.3e-07 Score=95.78 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=59.6
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEEccH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-----NCRFVCAKA 658 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-----Nv~fi~gDa 658 (860)
.+..+.+++...++.+|||+|||+|.++..|++.. .+|+|||+++.+++.|++++..+++. +++|+++|+
T Consensus 17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 93 (217)
T 3jwh_A 17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL 93 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc
Confidence 34445555555677899999999999999999875 69999999999999999999988876 799999985
No 328
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=98.62 E-value=5.9e-08 Score=106.92 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=46.2
Q ss_pred CcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 603 TLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
.+|||||||+|.+++.+.+.+ ..|+++|+++.|++..+.|.. +..++++|+.++.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~ 60 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGIT 60 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHcc
Confidence 479999999999999998875 479999999999999999863 3457788887643
No 329
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.61 E-value=7.3e-08 Score=102.08 Aligned_cols=62 Identities=16% Similarity=0.377 Sum_probs=55.4
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC----CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~----~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
+.++.+|||||||+|.+++.|++.. .+|+|||+++.||+.|++++...+. .+|+|+++|+.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~ 134 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 134 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence 5678999999999999999999874 3899999999999999999988776 479999999754
No 330
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.61 E-value=2.3e-08 Score=108.12 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=65.3
Q ss_pred EEEEcCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC
Q 002990 570 RFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649 (860)
Q Consensus 570 ~f~isp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~ 649 (860)
++.+.|...|..|......+...+.+.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++. +..
T Consensus 19 ~~~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~ 96 (295)
T 3gru_A 19 SHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYN 96 (295)
T ss_dssp -----------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCS
T ss_pred hcCCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCC
Confidence 344555443333433334455556666777888999999999999999999999999999999999999999987 456
Q ss_pred cEEEEEccHHH
Q 002990 650 NCRFVCAKAED 660 (860)
Q Consensus 650 Nv~fi~gDae~ 660 (860)
|++++++|+.+
T Consensus 97 ~v~vi~gD~l~ 107 (295)
T 3gru_A 97 NIEIIWGDALK 107 (295)
T ss_dssp SEEEEESCTTT
T ss_pred CeEEEECchhh
Confidence 89999999754
No 331
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.60 E-value=7e-08 Score=90.74 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=59.2
Q ss_pred cEEEeCC--CcccC---HHHHHHHhhhc-cceeEEeecc--------CCcceEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 002990 167 SKCLVHL--PRKWH---SDNLKKFLADH-GILYKSAKKK--------KGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (860)
Q Consensus 167 ki~VgnL--P~~~~---~~~Lkk~l~~~-~v~~~~ik~~--------r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L 232 (860)
-|+|.|+ |..+. +++|++.|++| .|..+.|.+. +++||+||+|.++++|.+||+.|||..|.||.|
T Consensus 22 vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i 101 (118)
T 3ue2_A 22 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 101 (118)
T ss_dssp EEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 4899998 33333 68999999999 4554555541 346999999999999999999999999999999
Q ss_pred EEEecCC
Q 002990 233 KVANVVP 239 (860)
Q Consensus 233 ~V~~A~p 239 (860)
+|..+.+
T Consensus 102 ~v~~~~~ 108 (118)
T 3ue2_A 102 VAEVYDQ 108 (118)
T ss_dssp EEEEECH
T ss_pred EEEEcCh
Confidence 9988754
No 332
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.60 E-value=1e-07 Score=102.70 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHH--cCC--CcEEEEEccHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI--NGI--KNCRFVCAKAEDVM 662 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~--Ngi--~Nv~fi~gDae~~~ 662 (860)
.+.+|||||||+|.++..++++ ..+|++||+++.+++.|++|+.. +++ .+++++.+|+.+++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l 157 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV 157 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHH
Confidence 4578999999999999999987 47999999999999999999865 333 58999999987753
No 333
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.60 E-value=3.4e-07 Score=100.59 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=55.6
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN--GI--KNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~N--gi--~Nv~fi~gDae~~~~ 663 (860)
....+|||||||+|.+++.|+++ ..+|++||+++.+++.|++|+..+ ++ .+++|+.+|+.+++.
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~ 188 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK 188 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHH
Confidence 45679999999999999999987 479999999999999999998763 44 579999999987654
No 334
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.60 E-value=3.3e-07 Score=99.17 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=60.7
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHH-HHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIG-LTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~-L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+...-..++.+.++.+|||+|||+|.++ +.+|+. ..+|+|||+++.|++.|+++++..|+.+++|+++|+.+
T Consensus 109 ~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~ 183 (298)
T 3fpf_A 109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV 183 (298)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG
T ss_pred HHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh
Confidence 33333334678899999999999998765 556663 67999999999999999999999999899999999865
No 335
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.59 E-value=1.3e-07 Score=101.01 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=53.9
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHc--C---------CCcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEIN--G---------IKNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~N--g---------i~Nv~fi~gDae~~~~ 663 (860)
..+.+|||||||+|.+++.++++ ..+|++||+++.+++.|++|+ .. + -.+++++.+|+.+++.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~ 148 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 148 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc
Confidence 45678999999999999999987 469999999999999999998 33 2 2579999999987654
No 336
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.59 E-value=2.5e-07 Score=95.24 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhc-cCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 584 LAAEKLYSLGGDWA-DLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 584 ~~ae~L~~~i~~~~-~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.....++..+...+ ...++.+|||+|||+|.+++.|++. ..+|+|||+++.+++.|++++..++..++.|+++|+.+
T Consensus 61 ~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 139 (241)
T 2ex4_A 61 NSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD 139 (241)
T ss_dssp HHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG
T ss_pred HhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhh
Confidence 34445555444433 2235789999999999999999887 46999999999999999999887766689999998643
No 337
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.59 E-value=8.9e-08 Score=100.06 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=57.8
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
+.+++ .++.+|||+|||+|.+++.|++.+ .+|+|+|+++.+++.|++|++.||+. +++++++|+.+
T Consensus 15 i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~ 83 (230)
T 3lec_A 15 VANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLS 83 (230)
T ss_dssp HHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred HHHhC--CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 44443 467899999999999999999975 58999999999999999999999996 59999999654
No 338
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.58 E-value=8.4e-08 Score=103.14 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=72.3
Q ss_pred EcCCCcccCCHHHHHHHHHHHhhhcc-CCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-
Q 002990 573 ISPTAFFQVNTLAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK- 649 (860)
Q Consensus 573 isp~sFFQvN~~~ae~L~~~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~- 649 (860)
+++..|.|.+ .......+.+.+.+. +.++.+|||+|||+|.+++.|++. ..+|+|||+++.+++.|++|+..+|+.
T Consensus 89 y~~~~f~~~~-~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 167 (312)
T 3vc1_A 89 YEKKVIAELH-RLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDD 167 (312)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred cchHHHhhhh-hHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Confidence 3455666644 344445567777776 788899999999999999999988 789999999999999999999999986
Q ss_pred cEEEEEccHHH
Q 002990 650 NCRFVCAKAED 660 (860)
Q Consensus 650 Nv~fi~gDae~ 660 (860)
+++|+++|+++
T Consensus 168 ~v~~~~~d~~~ 178 (312)
T 3vc1_A 168 HVRSRVCNMLD 178 (312)
T ss_dssp TEEEEECCTTS
T ss_pred ceEEEECChhc
Confidence 79999999754
No 339
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.57 E-value=4e-08 Score=102.91 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=62.1
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+...+.+.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++|+.. ..+++++++|+.+
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~ 87 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQ 87 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGG
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHh
Confidence 34455566777777888999999999999999999999999999999999999999863 3689999999754
No 340
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.57 E-value=2.8e-07 Score=110.77 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHH------cCCCcEEEE
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEI------NGIKNCRFV 654 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~------Ngi~Nv~fi 654 (860)
......+..+.+++...++.+|||||||+|.+++.|++.+ .+|+|||+++.|++.|++++.. +++.+++|+
T Consensus 704 PL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefi 783 (950)
T 3htx_A 704 PLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY 783 (950)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEE
T ss_pred hHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEE
Confidence 4455556666666666688899999999999999999987 7999999999999999996653 367899999
Q ss_pred EccHHH
Q 002990 655 CAKAED 660 (860)
Q Consensus 655 ~gDae~ 660 (860)
++|+.+
T Consensus 784 qGDa~d 789 (950)
T 3htx_A 784 DGSILE 789 (950)
T ss_dssp ESCTTS
T ss_pred ECchHh
Confidence 999754
No 341
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.55 E-value=1.4e-07 Score=103.88 Aligned_cols=69 Identities=26% Similarity=0.255 Sum_probs=58.4
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
+.+.....+.++.+|||+|||+|.+++.+++.. .+|+|||++ .+++.|+++++.+++.+ ++|+++|+++
T Consensus 56 ~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 126 (349)
T 3q7e_A 56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEE 126 (349)
T ss_dssp HHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHH
Confidence 334443445678899999999999999999984 599999999 59999999999999965 9999999754
No 342
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.55 E-value=1.6e-07 Score=95.61 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=50.8
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+|||+|||+|.++..+++.+.+|+|||+++.+++.|+.++.. ++.|+++|+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~ 97 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----GITYIHSRFED 97 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHH
Confidence 4567899999999999999999888999999999999999987643 79999999764
No 343
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.55 E-value=1.2e-07 Score=107.59 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=56.3
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhh---------------CCEEEEEeCCHHHHHHHHHHHHHcCCC--cEEEE
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---------------VGMVIGIEMNASAVSDAHRNAEINGIK--NCRFV 654 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---------------~~~VigVEis~~AIe~Ar~NA~~Ngi~--Nv~fi 654 (860)
.+.+++.+..+.+|||+|||+|.+.+.+++. ...++|+|+++.+++.|+.|+..+|+. ++.++
T Consensus 162 ~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~ 241 (445)
T 2okc_A 162 AMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIV 241 (445)
T ss_dssp HHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEE
T ss_pred HHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEe
Confidence 3344445667789999999999999998875 257999999999999999999999986 78888
Q ss_pred EccH
Q 002990 655 CAKA 658 (860)
Q Consensus 655 ~gDa 658 (860)
++|+
T Consensus 242 ~gD~ 245 (445)
T 2okc_A 242 CEDS 245 (445)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 8874
No 344
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.54 E-value=1.8e-07 Score=96.53 Aligned_cols=71 Identities=27% Similarity=0.362 Sum_probs=62.1
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
+..+...+.+.++.+|||+|||+|.+++.|++.. .+|+|||+++.+++.|++++..+|+. ++.|+++|+.+
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 97 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence 3445555667888999999999999999999874 69999999999999999999999985 89999999765
No 345
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.53 E-value=2.3e-07 Score=100.47 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=55.5
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHH--cCC--CcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEI--NGI--KNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~--Ngi--~Nv~fi~gDae~~~~ 663 (860)
....+|||||||+|.+++.++++. .+|++||+++.+++.|++|+.. +++ .+++++.+|+.+++.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~ 163 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh
Confidence 456799999999999999999874 7999999999999999999876 344 579999999987654
No 346
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.53 E-value=1.9e-07 Score=97.09 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=60.6
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++..+++.++.|+.+|+++
T Consensus 29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 44445567788999999999999999999989999999999999999999999999999999999754
No 347
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.53 E-value=4.7e-07 Score=102.82 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=64.3
Q ss_pred CCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHH-------HHHHHH
Q 002990 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDA-------HRNAEI 645 (860)
Q Consensus 575 p~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~A-------r~NA~~ 645 (860)
+..+-|..+.....+ ++.+.+.++.+|||||||+|.+++.||+.+ .+|+|||+++.+++.| +.|++.
T Consensus 220 ~~~yGet~p~~v~~m----l~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~ 295 (433)
T 1u2z_A 220 NYVYGELLPNFLSDV----YQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKL 295 (433)
T ss_dssp GGCCCCBCHHHHHHH----HHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHH----HHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH
Confidence 344556655544444 445567788999999999999999999864 5899999999999999 999999
Q ss_pred cC--CCcEEEEEccH
Q 002990 646 NG--IKNCRFVCAKA 658 (860)
Q Consensus 646 Ng--i~Nv~fi~gDa 658 (860)
+| +.|++|+++|.
T Consensus 296 ~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 296 YGMRLNNVEFSLKKS 310 (433)
T ss_dssp TTBCCCCEEEEESSC
T ss_pred cCCCCCceEEEEcCc
Confidence 99 57999999853
No 348
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.52 E-value=1.3e-07 Score=88.48 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=53.8
Q ss_pred HHHHHHHhhhc-cceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 002990 179 SDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (860)
Q Consensus 179 ~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~pk~~ 242 (860)
.++|+..|++| .|..+.+.+..++|||||+|.+.++|++||+.|||..|.||.|+|..+.+..+
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 95 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHH
Confidence 56889999999 45555555555689999999999999999999999999999999998865443
No 349
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.52 E-value=2.5e-07 Score=98.61 Aligned_cols=63 Identities=6% Similarity=0.029 Sum_probs=54.3
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEEccHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN--GI--KNCRFVCAKAEDVMG 663 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~N--gi--~Nv~fi~gDae~~~~ 663 (860)
...+|||||||+|.++..++++ ..+|++||+++.+++.|++|+... ++ .+++++.+|+.+++.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~ 143 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA 143 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh
Confidence 4578999999999999999987 479999999999999999997642 34 579999999987653
No 350
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.52 E-value=2.4e-07 Score=91.48 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=59.6
Q ss_pred hhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 594 ~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+++...++.+|||+|||+|.+++.+++...+|+|||+++.+++.|++++..+++.++.++++|+.+
T Consensus 25 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 91 (199)
T 2xvm_A 25 LEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN 91 (199)
T ss_dssp HHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG
T ss_pred HHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh
Confidence 3444555678999999999999999999888999999999999999999999999889999999754
No 351
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.51 E-value=5.5e-08 Score=102.99 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 581 vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+....+. +.+.+++.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++.. ..+++++++|+.+
T Consensus 13 ~d~~i~~~----iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~ 86 (255)
T 3tqs_A 13 HDSFVLQK----IVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQ 86 (255)
T ss_dssp CCHHHHHH----HHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTT
T ss_pred cCHHHHHH----HHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHh
Confidence 44444444 45555677888999999999999999999999999999999999999999864 5689999999865
Q ss_pred H
Q 002990 661 V 661 (860)
Q Consensus 661 ~ 661 (860)
+
T Consensus 87 ~ 87 (255)
T 3tqs_A 87 F 87 (255)
T ss_dssp C
T ss_pred C
Confidence 3
No 352
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.51 E-value=9.1e-08 Score=102.27 Aligned_cols=72 Identities=19% Similarity=0.098 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 581 vN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+....+. +.+.+++.++ +|||+|||+|.++..|++.+.+|+|||+++.+++.+++++. + .|++++++|+.+
T Consensus 31 ~d~~i~~~----Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~--~-~~v~vi~~D~l~ 102 (271)
T 3fut_A 31 VSEAHLRR----IVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS--G-LPVRLVFQDALL 102 (271)
T ss_dssp CCHHHHHH----HHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT--T-SSEEEEESCGGG
T ss_pred CCHHHHHH----HHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC--C-CCEEEEECChhh
Confidence 44555544 4455567778 99999999999999999999999999999999999999876 2 589999999754
No 353
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.50 E-value=1.3e-07 Score=96.41 Aligned_cols=59 Identities=19% Similarity=0.403 Sum_probs=54.1
Q ss_pred CCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++.+|||+|||+|.++..+++...+|+|||+++.+++.|++++..+++ ++.|+++|+.+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 95 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISN 95 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEeccccc
Confidence 677999999999999999999988999999999999999999998887 79999988643
No 354
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.49 E-value=8.2e-07 Score=93.62 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHH-hhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA-HRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA-~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae 659 (860)
....++..+.+.+.+.++.+|||+|||+|.+++.++ ....+|+|||+++.+++.|++++...++ .++.|+.+|+.
T Consensus 48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 124 (287)
T 1kpg_A 48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE 124 (287)
T ss_dssp HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence 344566777788888889999999999999999999 4467999999999999999999998887 48999999864
No 355
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.49 E-value=3.3e-07 Score=95.80 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=53.2
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+.+.+.++.+|||+|||+|.++..+|... ++|+|||+++.|++.+...++.. .|+.++.+|+.
T Consensus 70 ~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~ 135 (232)
T 3id6_C 70 KTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADAR 135 (232)
T ss_dssp SCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTT
T ss_pred hhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccc
Confidence 33568899999999999999999999874 49999999999987776666553 68999999975
No 356
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.49 E-value=1.9e-07 Score=95.29 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=57.9
Q ss_pred HHHHHhhhcc-CCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++..+..++. ..++.+|||+|||+|.++..+++. ..+|+|||+++.+++.|++++..++ ++.++++|+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~ 103 (234)
T 3dtn_A 31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSK 103 (234)
T ss_dssp HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTT
T ss_pred HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhc
Confidence 3344555544 456789999999999999999998 5799999999999999999987655 89999998643
No 357
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.49 E-value=1.7e-07 Score=95.83 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=52.4
Q ss_pred ccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 597 ~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+.+.++.+|||+|||+|.++..|++.+ .+|+|||+++.|++.+.++++.. .|+.++.+|+.
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~ 115 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDAS 115 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTT
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCC
Confidence 456788899999999999999999876 79999999999998888877753 58999888764
No 358
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.48 E-value=5.7e-08 Score=84.24 Aligned_cols=40 Identities=35% Similarity=0.648 Sum_probs=36.1
Q ss_pred CCCCCcccccccccccccCCCCCCCCCCCCcCccccCCCC
Q 002990 75 PSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRP 114 (860)
Q Consensus 75 ~~~~~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~elr~~p 114 (860)
+.+++.|||.||++|.++|.|.+|++|+|||+.+|||..+
T Consensus 4 ~~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~ 43 (77)
T 1m9o_A 4 MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN 43 (77)
T ss_dssp CCCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC
T ss_pred CCCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc
Confidence 4567899999999998889999999999999999999754
No 359
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.48 E-value=3.4e-07 Score=99.91 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=55.1
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHH--cCC--CcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI--NGI--KNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~--Ngi--~Nv~fi~gDae~~~~ 663 (860)
..+.+|||+|||+|.+++.++++ ..+|++||+++.+++.|++|+.. +++ .+++++++|+.+.+.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~ 184 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE 184 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh
Confidence 34578999999999999999987 47999999999999999999876 333 579999999987654
No 360
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.48 E-value=2.4e-07 Score=94.24 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEE
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIK-NCRF 653 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~f 653 (860)
.+.+|..+..++ .+..+|||||||+|.+++.++.. ..+|+|+|+|+.|++.|++|+..+|+. ++.|
T Consensus 36 ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~ 104 (200)
T 3fzg_A 36 LNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF 104 (200)
T ss_dssp HHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE
T ss_pred HHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE
Confidence 455677777776 44679999999999999999655 349999999999999999999999998 7888
No 361
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.47 E-value=3.1e-07 Score=94.64 Aligned_cols=68 Identities=25% Similarity=0.332 Sum_probs=61.9
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+++.+.++.+|||+|||+|.++..++..+.+|+|||+++.+++.|++++..+++.++.|+.+|+++
T Consensus 13 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 80 (239)
T 1xxl_A 13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 80 (239)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB
T ss_pred HHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc
Confidence 44556678899999999999999999999989999999999999999999999999999999999753
No 362
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.47 E-value=3.6e-07 Score=94.35 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=59.5
Q ss_pred Hhhhc-cCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 593 GGDWA-DLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 593 i~~~~-~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
++.++ .+.++.+|||+|||+|.+++.+++... +|+|||+++.+++.|++++..+|+.+ ++|+++|+.+
T Consensus 37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 107 (257)
T 3f4k_A 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN 107 (257)
T ss_dssp HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 34443 567788999999999999999999865 99999999999999999999999965 9999999743
No 363
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.47 E-value=3.8e-07 Score=100.23 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=60.8
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
.....+...+.+.++.+|||+|||+|.+++.+++.. .+|+|||+++ +++.|+++++.+|+ ++++++.+|+++
T Consensus 37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~ 110 (348)
T 2y1w_A 37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE 110 (348)
T ss_dssp HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhh
Confidence 334455566666788899999999999999999875 5999999996 88999999999999 689999998653
No 364
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=98.47 E-value=4.8e-07 Score=100.39 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=58.1
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC------CcEEEEEccHHHH
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI------KNCRFVCAKAEDV 661 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi------~Nv~fi~gDae~~ 661 (860)
..+++.++.+|||+|||.|.-++.||... +.|+++|+++.-++.+++|++++++ .++.+.+.|+..+
T Consensus 142 ~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~ 216 (359)
T 4fzv_A 142 LALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW 216 (359)
T ss_dssp HHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH
T ss_pred HHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc
Confidence 34578899999999999999999999875 4799999999999999999999876 3788888887653
No 365
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.47 E-value=4.8e-07 Score=95.45 Aligned_cols=59 Identities=27% Similarity=0.442 Sum_probs=54.6
Q ss_pred CCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
+.+|||+|||+|.++..|++...+|+|||+++.+++.|++++..+|+ .+++|+++|+.+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 128 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQD 128 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGG
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHH
Confidence 57899999999999999999988999999999999999999999998 689999999765
No 366
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.46 E-value=5.1e-07 Score=98.07 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=55.0
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHH-c-C---CCcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI-N-G---IKNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~-N-g---i~Nv~fi~gDae~~~~ 663 (860)
....+|||||||+|.++..++++ ..+|++||+++.+++.|++++.. + + -.+++++.+|+.+++.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~ 146 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE 146 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH
Confidence 35578999999999999999987 47999999999999999999864 2 2 3689999999988654
No 367
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.45 E-value=3.1e-07 Score=91.58 Aligned_cols=54 Identities=26% Similarity=0.268 Sum_probs=49.0
Q ss_pred CCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+|||+|||+|.++..|+....+|+|||+++.+++.|+++ ..++.|+++|+.+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~ 95 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT-----HPSVTFHHGTITD 95 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGG
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccc
Confidence 67899999999999999999888999999999999999987 3478999999765
No 368
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.45 E-value=3.4e-07 Score=99.82 Aligned_cols=71 Identities=31% Similarity=0.425 Sum_probs=58.6
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
....+...+.+.++.+|||+|||+|.+++.+++.. .+|+|||++ .+++.|+++++.+++. +++++.+|+++
T Consensus 26 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 98 (328)
T 1g6q_1 26 YRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhh
Confidence 33444444445577899999999999999999875 599999999 6999999999999995 69999998654
No 369
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.43 E-value=2.8e-07 Score=92.86 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=60.4
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+...+.+.++.+|||+|||+|.++..+++.. .+|+|||+++.+++.|++++..+++.++.|+++|+.+
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 99 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 3444466778899999999999999999886 7999999999999999999999999999999999653
No 370
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.43 E-value=3.9e-07 Score=92.03 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
...+.++..+..++. ++.+|||+|||+|.+++.+++...+|+|||+++.+++.|++++..++ .+++++++|+.+
T Consensus 23 ~~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~ 96 (227)
T 1ve3_A 23 SRIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARK 96 (227)
T ss_dssp HHHHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTS
T ss_pred HHHHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhc
Confidence 445556666666543 47799999999999999999988899999999999999999999888 689999999653
No 371
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.43 E-value=1.3e-07 Score=95.70 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=54.2
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc------------CCCcEEEEEccHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN------------GIKNCRFVCAKAED 660 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~N------------gi~Nv~fi~gDae~ 660 (860)
.+.++.+|||+|||+|..++.|++.+.+|+|||+|+.||+.|++++... ...+++|+++|+.+
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence 4567789999999999999999999889999999999999999876531 23579999999765
No 372
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.43 E-value=1.4e-07 Score=101.22 Aligned_cols=74 Identities=8% Similarity=0.039 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCE----EEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 002990 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM----VIGIEMNASAVSDAHRNAEINGIKNCRFVC 655 (860)
Q Consensus 580 QvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~----VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~ 655 (860)
-.+....+. +.+.+.+.++.+|||+|||+|.++..|++.+.. |+|||+++.+++.|++++ ..++++++
T Consensus 25 L~d~~i~~~----iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~ 96 (279)
T 3uzu_A 25 LVDHGVIDA----IVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHA 96 (279)
T ss_dssp ECCHHHHHH----HHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEE
T ss_pred cCCHHHHHH----HHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEE
Confidence 345555444 455556778889999999999999999998877 999999999999999994 45899999
Q ss_pred ccHHHH
Q 002990 656 AKAEDV 661 (860)
Q Consensus 656 gDae~~ 661 (860)
+|+.++
T Consensus 97 ~D~~~~ 102 (279)
T 3uzu_A 97 GDALTF 102 (279)
T ss_dssp SCGGGC
T ss_pred CChhcC
Confidence 998653
No 373
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.42 E-value=2e-07 Score=100.64 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=52.6
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAEDV 661 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ng-----i~Nv~fi~gDae~~ 661 (860)
....+|||||||+|.++..++++ ..+|++||+++.+++.|++|+...+ -.+++++.+|+.++
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~ 150 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF 150 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC-
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHH
Confidence 34678999999999999999987 4799999999999999999987652 35799999997654
No 374
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.42 E-value=9.1e-07 Score=95.57 Aligned_cols=63 Identities=5% Similarity=0.018 Sum_probs=53.6
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHH----cCCCcEEEEEccHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI----NGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~----Ngi~Nv~fi~gDae~~~ 662 (860)
..+.+|||||||+|.++..+++. ..+|++||+++.+++.|++++.. ..-.+++++.+|+.+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~ 162 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV 162 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH
Confidence 45679999999999999999987 46999999999999999998743 12357999999998764
No 375
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.41 E-value=8.3e-07 Score=91.53 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=57.5
Q ss_pred hhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 594 ~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.......++.+|||+|||+|.+++.|++...+|+|||+++.+++.|++++..+++ ++.++++|+.+
T Consensus 34 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~ 99 (252)
T 1wzn_A 34 FKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLE 99 (252)
T ss_dssp HHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGG
T ss_pred HHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhh
Confidence 3333345678999999999999999999888999999999999999999998887 79999999754
No 376
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.40 E-value=3.6e-07 Score=92.15 Aligned_cols=58 Identities=17% Similarity=0.039 Sum_probs=50.8
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
...++.+|||+|||+|.++..|++...+|+|||+++.+++.|++++. .++.|+++|+.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~ 99 (220)
T 3hnr_A 42 VNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFL 99 (220)
T ss_dssp HHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSS
T ss_pred hccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChh
Confidence 34467899999999999999999998899999999999999998865 57888888754
No 377
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.40 E-value=1.8e-06 Score=88.86 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=55.3
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++..+...++.+|||+|||+|.++..|+.. ..+|+|||+++.+++.|++++..+ .++.|+++|+.+
T Consensus 85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~ 151 (254)
T 1xtp_A 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMET 151 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGG
T ss_pred HHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHH
Confidence 344445567889999999999999999877 578999999999999999987654 689999998654
No 378
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.40 E-value=1.3e-06 Score=93.43 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=55.2
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEING----IKNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ng----i~Nv~fi~gDae~~~~ 663 (860)
..+.+|||||||+|.++..++++. .+|++||+++.+++.|++++..++ -.+++++.+|+.+.+.
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~ 146 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE 146 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH
Confidence 456799999999999999999873 799999999999999999986543 3689999999988654
No 379
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.40 E-value=6.8e-07 Score=93.41 Aligned_cols=68 Identities=26% Similarity=0.440 Sum_probs=59.1
Q ss_pred Hhhhcc-CCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 593 GGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
++.++. +.++.+|||+|||+|.+++.+++... +|+|||+++.+++.|+++++.+|+. +++|+++|+.+
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence 344443 67788999999999999999999864 9999999999999999999999995 59999999754
No 380
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.40 E-value=8.5e-07 Score=92.54 Aligned_cols=78 Identities=27% Similarity=0.334 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 583 ~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
......+...+.+.+.+.++.+|||+|||+|.+++.+++. ..+|+|||+++.+++.|++++..+++. ++.|+.+|+.+
T Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 122 (273)
T 3bus_A 43 DDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD 122 (273)
T ss_dssp HHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc
Confidence 4556667777888888888999999999999999999985 579999999999999999999999985 79999999754
No 381
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.39 E-value=5e-07 Score=98.42 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=55.0
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN--GI--KNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~N--gi--~Nv~fi~gDae~~~~ 663 (860)
....+|||||||+|.+++.++++ ..+|++||+++.+++.|++|+..+ ++ .+++++.+|+.+.+.
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~ 176 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK 176 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH
Confidence 34578999999999999999987 479999999999999999998654 33 579999999988654
No 382
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.39 E-value=6.2e-07 Score=99.94 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 582 N~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
....++.++ +++...++.+|||+|||+|.+++.++++ ..+|+|||+++.|++.| .++.++++|+
T Consensus 24 P~~l~~~~~----~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~ 90 (421)
T 2ih2_A 24 PPEVVDFMV----SLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADF 90 (421)
T ss_dssp CHHHHHHHH----HHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCG
T ss_pred CHHHHHHHH----HhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCCh
Confidence 344444444 4444445669999999999999999975 36999999999999887 4789999986
Q ss_pred H
Q 002990 659 E 659 (860)
Q Consensus 659 e 659 (860)
.
T Consensus 91 ~ 91 (421)
T 2ih2_A 91 L 91 (421)
T ss_dssp G
T ss_pred h
Confidence 4
No 383
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.39 E-value=6e-07 Score=87.82 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=49.2
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+.++.+|||+|||+|.++..+++...+|+|+|+++.+++.|+.++ .++.++++|+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~ 99 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLS 99 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTT
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccc
Confidence 356789999999999999999998889999999999999999875 35788888754
No 384
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.38 E-value=6.5e-07 Score=93.73 Aligned_cols=75 Identities=28% Similarity=0.399 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
...+...+.....+.++.+|||+|||+|.++..+++. ..+|+|||+++.+++.|+.++..+++.++.|+.+|+.+
T Consensus 22 ~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 98 (276)
T 3mgg_A 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98 (276)
T ss_dssp -CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred HHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccccc
Confidence 3444555555666678899999999999999999988 57999999999999999999999999999999999764
No 385
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.38 E-value=6e-07 Score=92.34 Aligned_cols=63 Identities=14% Similarity=0.002 Sum_probs=55.9
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
+.++.+|||+|||+|.+++.|++.. .+|+|||+++.|++.|++++..++ .++.|+++|+++++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVA 121 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHG
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhh
Confidence 4567899999999999999998854 489999999999999999998877 68999999998753
No 386
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.38 E-value=1e-06 Score=91.33 Aligned_cols=63 Identities=14% Similarity=-0.010 Sum_probs=55.9
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~ 663 (860)
.++.+|||+|||+|.++..+++.. .+|+|||+++.+++.|++++...+. ++.++.+|+++++.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~ 122 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAP 122 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGG
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcc
Confidence 467899999999999999999874 6899999999999999999988774 79999999987643
No 387
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.38 E-value=7.5e-07 Score=97.73 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=61.5
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
+.+.+...+.+.++.+|||+|||+|.+++.+++.+ .+|+|||+++ +++.|++|++.+++ ++++++.+|+++
T Consensus 52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEE 124 (340)
T ss_dssp HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHH
Confidence 33555566667788899999999999999999885 5999999996 99999999999999 689999999764
No 388
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.38 E-value=4.5e-07 Score=95.81 Aligned_cols=66 Identities=6% Similarity=-0.015 Sum_probs=54.6
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCE--EEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM--VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~--VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+.+.+.+.++.+|||+|||+|.++. +++ +.+ |+|||+++.+++.|++++..+ .|++++++|+.+
T Consensus 11 ~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~ 78 (252)
T 1qyr_A 11 DSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGG
T ss_pred HHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhh
Confidence 344445567788899999999999999 765 577 999999999999999887543 589999999866
No 389
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.38 E-value=3.5e-07 Score=102.08 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=55.4
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~~ 661 (860)
...++.+|||||||+|.+++.+|+.+ ++|+|||.++ +++.|+++++.||+. +|+++.++++++
T Consensus 80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~ 144 (376)
T 4hc4_A 80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV 144 (376)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee
Confidence 34468899999999999999999875 6999999996 889999999999995 599999998763
No 390
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.37 E-value=5.5e-07 Score=105.44 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=59.9
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~ 664 (860)
..+.+|||+|||.|.++..||+.+..|+|||+++.+|+.|+..|..+|.-+++|.+++++++...
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 129 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA 129 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh
Confidence 34578999999999999999999999999999999999999999998877899999999997654
No 391
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.37 E-value=2.9e-06 Score=87.24 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=53.8
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++ ...++.|+++|+.+.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~ 113 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVP 113 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECccccc
Confidence 467789999999999999999999889999999999999999887 335899999998764
No 392
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.37 E-value=6.3e-07 Score=89.47 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=61.1
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
.+...+.+.+...++ +|||+|||+|.++..|++. ..+|+|+|+++.+++.|+.++..+++. ++.|+++|+.+
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence 444555556565555 9999999999999999987 469999999999999999999999985 89999999754
No 393
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.34 E-value=5.7e-06 Score=82.94 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=52.4
Q ss_pred hhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 594 ~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
...+....+.+|||+|||+|.++..+++...+|+|||+++.+++.|+++ .++.++.+++.++
T Consensus 45 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~ 106 (227)
T 3e8s_A 45 LLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQL 106 (227)
T ss_dssp HHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHH
T ss_pred HHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh------cccccchhhHHhh
Confidence 3333445668999999999999999999988999999999999999887 4677899998764
No 394
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.32 E-value=1.6e-06 Score=93.07 Aligned_cols=76 Identities=24% Similarity=0.233 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
....++..+.+.+.+.++.+|||+|||+|.+++.+++. ..+|+|||+++.+++.|++++..+|+. ++.|+.+|+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 151 (318)
T 2fk8_A 74 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED 151 (318)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred HHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH
Confidence 33456667777778888999999999999999999987 679999999999999999999998884 69999999754
No 395
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.32 E-value=5.4e-07 Score=94.95 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH----------c-------CCCcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI----------N-------GIKNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~----------N-------gi~Nv~fi~gDae~ 660 (860)
+.++.+|||+|||+|..+..||+.+.+|+|||+|+.||+.|++++.. + ...+++|+++|+.+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35678999999999999999999988999999999999999876531 1 12579999999865
No 396
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.32 E-value=6.5e-07 Score=91.64 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=52.2
Q ss_pred CCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
+.+|||+|||+|.+++.|++.+.+|+|||+++.+++.|++++...+. .+++|+++|+.+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 126 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc
Confidence 35999999999999999999888999999999999999999887543 579999998643
No 397
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.31 E-value=1.6e-06 Score=91.87 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhhc----cCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEcc
Q 002990 584 LAAEKLYSLGGDWA----DLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAK 657 (860)
Q Consensus 584 ~~ae~L~~~i~~~~----~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gD 657 (860)
.....++..+.+.+ .+.++.+|||+|||+|.++..|++. ..+|+|||+++.+++.|++++...|+ .++.|+++|
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d 140 (297)
T 2o57_A 61 EASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 140 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcC
Confidence 34444556666666 6778899999999999999999987 56999999999999999999999998 579999999
Q ss_pred HHH
Q 002990 658 AED 660 (860)
Q Consensus 658 ae~ 660 (860)
+.+
T Consensus 141 ~~~ 143 (297)
T 2o57_A 141 FLE 143 (297)
T ss_dssp TTS
T ss_pred ccc
Confidence 754
No 398
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.31 E-value=7.5e-07 Score=88.84 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=54.8
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+...+..++ .++.+|||+|||+|.+++.+++... +|+|+|+++.+++.|++++.. ..++.++.+|+.
T Consensus 32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~ 99 (215)
T 2pxx_A 32 FRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVR 99 (215)
T ss_dssp HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTT
T ss_pred HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchh
Confidence 444455543 5678999999999999999998864 899999999999999998763 457899998864
No 399
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.30 E-value=1.3e-06 Score=100.50 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
..+.+...+...+...++.+|||+|||+|.+++.+++.. .+|+|||+++ +++.|++|++.+|+ ++++|+.+|+++
T Consensus 142 ~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 142 RTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred hHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 345566666666666678899999999999999999874 5999999998 99999999999999 689999999754
No 400
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.5e-06 Score=92.64 Aligned_cols=72 Identities=31% Similarity=0.529 Sum_probs=60.3
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHh---hCCEEEEEeCCHHHHHHHHHHHHHc--CCCcEEEEEccHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH---RVGMVIGIEMNASAVSDAHRNAEIN--GIKNCRFVCAKAED 660 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~---~~~~VigVEis~~AIe~Ar~NA~~N--gi~Nv~fi~gDae~ 660 (860)
.+++.+..+.. .++.+|||+|||+|.++..|++ ...+|+|||+++.+++.|+++++.+ +..+++|+++|+++
T Consensus 24 ~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 24 DFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD 100 (299)
T ss_dssp HHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred HHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence 35555555533 4678999999999999999994 5689999999999999999999986 34789999999865
No 401
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.28 E-value=2.3e-06 Score=81.89 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=48.1
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+...+..+..+.++.+|||+|||+|.++..+++.. .+|+|+|+++ +++ +.++.++++|+.+.
T Consensus 10 l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~ 74 (180)
T 1ej0_A 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDE 74 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSH
T ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccc
Confidence 33333333335678899999999999999999872 7999999999 653 36899999998654
No 402
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.28 E-value=1.3e-06 Score=90.12 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhh-hccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 583 TLAAEKLYSLGGD-WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 583 ~~~ae~L~~~i~~-~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
....+.+.+.+.. ...+.++.+|||+|||+|.+++.+++...+|+|||+++.+++.|++++ ..+..++.|+.+|+++
T Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~ 97 (263)
T 2yqz_A 20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARA 97 (263)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTS
T ss_pred hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEccccc
Confidence 4445555555543 234567889999999999999999998899999999999999999998 4456789999999753
No 403
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.27 E-value=3.3e-06 Score=86.78 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=54.0
Q ss_pred HHHHHhhhcc-CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 002990 589 LYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (860)
Q Consensus 589 L~~~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~ 662 (860)
+...+..++. +.++.+|||+|||+|.++..|++...+|+|||+++.+++.|+.+ +.++.+|+.+.+
T Consensus 28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~ 94 (240)
T 3dli_A 28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYL 94 (240)
T ss_dssp HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHH
T ss_pred HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------cceeeccHHHHh
Confidence 3344444433 45678999999999999999999888999999999999999876 789999988764
No 404
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.27 E-value=1.6e-06 Score=94.76 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=53.5
Q ss_pred CcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 002990 603 TLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~ 663 (860)
.+|||||||+|.++..+++. ..+|++||+++.+++.|++++..+.-.+++++.+|+.+++.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~ 153 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAE 153 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHH
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHh
Confidence 38999999999999999984 35999999999999999999866555689999999988754
No 405
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.27 E-value=6.2e-07 Score=96.03 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=55.0
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHh--h-CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAH--R-VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~--~-~~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
.+.++.+|||+|||+|.+++.++. . ..+|+|||+++.+++.|++|+..+++.+ ++|+++|+.+
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK 181 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc
Confidence 456788999999999999999962 2 4699999999999999999999999864 9999999754
No 406
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=98.26 E-value=1.1e-06 Score=98.03 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=84.2
Q ss_pred CcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHhhhhcCCccccccccc
Q 002990 603 TLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHAS 681 (860)
Q Consensus 603 ~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~~~~~~~~~~~~~~~~ 681 (860)
.++||||||+|.+++-+.+.+ ..|.+||+++.|++..+.|. .++.++++|+.++...-+.....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~---------- 67 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFK---------- 67 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHC----------
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcc----------
Confidence 479999999999999998775 45779999999999998884 46778899987653322111000
Q ss_pred cCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCccEEEEcCC---
Q 002990 682 EGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPP--- 758 (860)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IvDPP--- 758 (860)
...+.|+++.+||
T Consensus 68 ----------------------------------------------------------------~~~~~D~i~ggpPCQ~ 83 (376)
T 3g7u_A 68 ----------------------------------------------------------------NDMPIDGIIGGPPCQG 83 (376)
T ss_dssp ----------------------------------------------------------------SCCCCCEEEECCCCCT
T ss_pred ----------------------------------------------------------------cCCCeeEEEecCCCCC
Confidence 0012379999999
Q ss_pred ------------CCCCcHHHHHHHHhccCCCeEEE------EecCchhhHHHHHHh
Q 002990 759 ------------RGGLHPTVIKILRTHARLQRLVY------ISCNPETLVANAIEL 796 (860)
Q Consensus 759 ------------R~Gl~~~vi~~lr~~~~~~rlVY------VSCnp~tl~rD~~~L 796 (860)
|.+|-..+++.|... +|+.+|+ +|++...+.++++.|
T Consensus 84 fS~ag~~~~~d~r~~L~~~~~~~v~~~-~P~~~v~ENV~gl~s~~~~~~~~~i~~l 138 (376)
T 3g7u_A 84 FSSIGKGNPDDSRNQLYMHFYRLVSEL-QPLFFLAENVPGIMQEKYSGIRNKAFNL 138 (376)
T ss_dssp TC-------CHHHHHHHHHHHHHHHHH-CCSEEEEEECTTTTCGGGHHHHHHHHHH
T ss_pred cccccCCCCCCchHHHHHHHHHHHHHh-CCCEEEEecchHhhccCcHHHHHHHHHH
Confidence 445556678888764 7999999 899888888887755
No 407
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.25 E-value=1.1e-06 Score=90.85 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=60.1
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
...+.+.+.+.++.+|||+|||+|.+++.+++. ..+|+|||+++.+++.|++++... .+++|+++|+.+
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~ 113 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILT 113 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTT
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECcccc
Confidence 455667777888899999999999999999987 789999999999999999887654 689999999754
No 408
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.25 E-value=2.6e-06 Score=94.38 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=54.8
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHc-C--CC-----cEEEEEccHHHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN-G--IK-----NCRFVCAKAEDVMGSL 665 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~N-g--i~-----Nv~fi~gDae~~~~~l 665 (860)
...+|||||||+|.++..++++. .+|++||+++.+++.|++|+... + ++ +++++.+|+.+++..+
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~ 261 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY 261 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhh
Confidence 46799999999999999988774 78999999999999999997532 1 22 6999999999988764
No 409
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.24 E-value=2.5e-06 Score=88.16 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
....+..+..++...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++. ..++.|+++|+.+
T Consensus 29 ~~~~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~ 101 (253)
T 3g5l_A 29 AAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIED 101 (253)
T ss_dssp HHHHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGG
T ss_pred chhhHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhh
Confidence 334445566777666788999999999999999999875 99999999999999998865 4689999999754
No 410
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.23 E-value=1.3e-06 Score=92.90 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=56.5
Q ss_pred hhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC---CcEEEEEccHHH
Q 002990 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI---KNCRFVCAKAED 660 (860)
Q Consensus 594 ~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi---~Nv~fi~gDae~ 660 (860)
...+...+ .+|||||||+|.+++.|++...+|+|||+++.+++.|++++..+++ .+++|+++|+.+
T Consensus 76 ~~~~~~~~-~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 76 ATRTGPVS-GPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp HHHHCCCC-SCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred HHhhCCCC-CcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence 33333333 4899999999999999999988999999999999999999998775 689999999754
No 411
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.20 E-value=8.5e-06 Score=82.02 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+..|.+....+--+.++.+|||||||+|.+++.+++...+|+|||+++. ..+.++.|+++|+.+
T Consensus 8 Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~-----------~~~~~v~~~~~D~~~ 73 (191)
T 3dou_A 8 RAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM-----------EEIAGVRFIRCDIFK 73 (191)
T ss_dssp HHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC-----------CCCTTCEEEECCTTS
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc-----------ccCCCeEEEEccccC
Confidence 355567766666655678899999999999999999999899999999974 245689999999764
No 412
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.19 E-value=2.2e-06 Score=85.72 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=52.8
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.++.+|||+|||+|.++..|++...+|+|||+++.+++.|+. .++.++.|+++|+.+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~ 101 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFD 101 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTS
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCCCCeEEEeccccc
Confidence 5667799999999999999999998899999999999999988 677899999999754
No 413
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.19 E-value=7.3e-07 Score=90.17 Aligned_cols=60 Identities=32% Similarity=0.522 Sum_probs=54.7
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEEccHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK-----NCRFVCAKAE 659 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~-----Nv~fi~gDae 659 (860)
.++.+|||+|||+|.+++.++....+|+|+|+++.+++.|+.++..+++. ++.++++|+.
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 93 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS 93 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTT
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccc
Confidence 46789999999999999999999889999999999999999999888773 6899999864
No 414
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.18 E-value=4.9e-07 Score=93.44 Aligned_cols=61 Identities=26% Similarity=0.284 Sum_probs=52.5
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCC-HHHHHHH---HHHHHHcCCCcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMN-ASAVSDA---HRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis-~~AIe~A---r~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++.+|||||||+|.+++.||+. ...|+|||++ +.+++.| ++++...++.|+.|+++|+++
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence 46789999999999999999953 5689999999 6666666 888888899999999999765
No 415
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.17 E-value=3.1e-06 Score=89.65 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=56.4
Q ss_pred ccCCCCCcEEeeccCCcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 597 ADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 597 ~~l~~~~~VLDL~CGtG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+.++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++++...+. |++|+++|+.+
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 83 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATE 83 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTT
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhh
Confidence 35667889999999999999999987 46999999999999999999988776 89999999764
No 416
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.17 E-value=2e-06 Score=89.77 Aligned_cols=68 Identities=18% Similarity=0.322 Sum_probs=59.7
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHH------HHHHHHHHHHHcCC-CcEEEEEcc
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNAS------AVSDAHRNAEINGI-KNCRFVCAK 657 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~------AIe~Ar~NA~~Ngi-~Nv~fi~gD 657 (860)
+..+.+.+.+.++.+|||+|||+|.+++.+++.. .+|+|||+++. +++.|++++..+++ .+++|+.+|
T Consensus 32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 3445556677888999999999999999999874 79999999997 99999999998888 589999987
No 417
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.16 E-value=2.5e-06 Score=84.98 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=54.0
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++ +|||+|||+|.++..+++...+|+|||+++.+++.|++++..+++ ++.|+++|+.+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 87 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLAD 87 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTT
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhh
Confidence 455 999999999999999999888999999999999999999998887 89999998754
No 418
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.16 E-value=3e-06 Score=89.48 Aligned_cols=74 Identities=14% Similarity=0.009 Sum_probs=60.3
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC----CcEEEEEccHHHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI----KNCRFVCAKAEDVM 662 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi----~Nv~fi~gDae~~~ 662 (860)
+...+...+...++.+|||+|||+|.+++.|+....+|+|||+++.|++.|++++...+. .++.+..+|+.++-
T Consensus 45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 334455555556778999999999999999999988999999999999999999865443 46889999987653
No 419
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.15 E-value=4.8e-06 Score=84.90 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=57.5
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+...+...+ .++.+|||+|||+|.+++.+++. .+|+|||+++.+++.|++++..++ .++.++++|+.+
T Consensus 23 ~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~ 90 (243)
T 3d2l_A 23 WVAWVLEQV--EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRE 90 (243)
T ss_dssp HHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGG
T ss_pred HHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhh
Confidence 444455543 34689999999999999999998 899999999999999999998877 579999999754
No 420
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=6.1e-06 Score=78.00 Aligned_cols=74 Identities=11% Similarity=0.196 Sum_probs=62.3
Q ss_pred CCccccEEEeCCCcc-cCHHHHHHHhhhc-cceeEEeeccCCcceEEEEeCC-HHHHHHHHHHHc--CCccCCceeEEEe
Q 002990 162 QDVELSKCLVHLPRK-WHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFES-VEQLKNAVEELE--GISIGNKTLKVAN 236 (860)
Q Consensus 162 ~~~~~ki~VgnLP~~-~~~~~Lkk~l~~~-~v~~~~ik~~r~~gFgFVtF~s-~Eea~kAIe~Ln--G~~~kGr~L~V~~ 236 (860)
-.++.-|||+||++. ++.++||.+|++| .|.++.+. +...+|||.|.+ +++|.+|++.|| |..++|..+++..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~--~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV--RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC--TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe--cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 567888999999999 9999999999999 55555544 445689999999 899999999994 8889998887753
Q ss_pred c
Q 002990 237 V 237 (860)
Q Consensus 237 A 237 (860)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 421
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=3.9e-06 Score=75.26 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=53.5
Q ss_pred cccEEEeCCC----cccCH----HHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 002990 165 ELSKCLVHLP----RKWHS----DNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (860)
Q Consensus 165 ~~ki~VgnLP----~~~~~----~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~ 235 (860)
.-.|.|...| ..|-. .+|...|.+|| |..+++.. +.+||+|++.+.|.+||+ |||+.+.||.|+|.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE----DKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS----SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec----CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 3345555555 23333 67888899997 44444333 348999999999999999 99999999999999
Q ss_pred ecCCC
Q 002990 236 NVVPR 240 (860)
Q Consensus 236 ~A~pk 240 (860)
.+.|.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 88663
No 422
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.13 E-value=2.3e-06 Score=91.45 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=40.5
Q ss_pred CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING 647 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ng 647 (860)
.+.+|||+|||+|.+++.|++. ..+|+|||+++.+++.|++|+..++
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~ 94 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYL 94 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhh
Confidence 5789999999999999999998 4799999999999999999987655
No 423
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.11 E-value=1.6e-06 Score=90.24 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=47.0
Q ss_pred CCCcEEeeccCCcHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHR------VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~------~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++.+|||||||+|.+++.||+. ..+|+|||+++.+++.|+ + . ..+|+|+++|+.+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~---~-~~~v~~~~gD~~~ 141 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-S---D-MENITLHQGDCSD 141 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-G---G-CTTEEEEECCSSC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-c---c-CCceEEEECcchh
Confidence 4579999999999999999987 579999999999999887 1 1 2689999999754
No 424
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.11 E-value=5e-08 Score=101.71 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=59.5
Q ss_pred HHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 590 ~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+..+.+.+.+.++.+|||+|||+|.+++.|++.+.+|+|||+++.+++.|++|+. +..+++++++|+.+
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~ 86 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQ 86 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTT
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhh
Confidence 3445566677788899999999999999999999999999999999999998876 34689999999754
No 425
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.10 E-value=4.6e-06 Score=85.23 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=50.3
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
.++.+|||+|||+|.+++.|++...+|+|||+++.+++.|+++ ..+++|+++|+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~ 101 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----APHADVYEWNGK 101 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----CCCceEEEcchh
Confidence 5678999999999999999999988999999999999999988 457999999974
No 426
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.08 E-value=6.2e-06 Score=86.65 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=55.3
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
+.++.+|||+|||+|.+++.+++... +|+|||+++.+++.|++++...++ .++.|+++|+.+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 125 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG 125 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc
Confidence 45778999999999999999988754 999999999999999999998887 579999999754
No 427
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.08 E-value=1.5e-06 Score=90.75 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=55.9
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+...+.+.+.+.++.+|||+|||+|.++..+++...+|+|||+++.+++.|+.+. |+.|+++|+++
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~ 87 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAEN 87 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTS
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhh
Confidence 4445555556678889999999999999999998899999999999999887654 89999999754
No 428
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.07 E-value=1.7e-06 Score=91.39 Aligned_cols=65 Identities=26% Similarity=0.363 Sum_probs=54.0
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.|++.+..+.. .+.+|||||||+|.++..|+..+.+|+|||+|+.|++.|++ ..++.|+++++++
T Consensus 28 ~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~ 92 (257)
T 4hg2_A 28 ALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR------HPRVTYAVAPAED 92 (257)
T ss_dssp HHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC------CTTEEEEECCTTC
T ss_pred HHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh------cCCceeehhhhhh
Confidence 35566666543 35689999999999999999999999999999999988764 3589999999764
No 429
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.06 E-value=2.6e-05 Score=77.03 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCcEEE
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-----------GMVIGIEMNASAVSDAHRNAEINGIKNCRF 653 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~-----------~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~f 653 (860)
.+..|++....+..+.++.+|||||||+|.+++.|++.. .+|+|||+++.+ .+.++++
T Consensus 6 ~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~ 74 (196)
T 2nyu_A 6 SAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATF 74 (196)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEE
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeE
Confidence 445566655555456778899999999999999999874 689999999832 3567899
Q ss_pred E-EccHHH
Q 002990 654 V-CAKAED 660 (860)
Q Consensus 654 i-~gDae~ 660 (860)
+ .+|+..
T Consensus 75 ~~~~d~~~ 82 (196)
T 2nyu_A 75 LCPADVTD 82 (196)
T ss_dssp ECSCCTTS
T ss_pred EEeccCCC
Confidence 9 888654
No 430
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.05 E-value=6.1e-06 Score=85.07 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=55.0
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++ ..++.|+.+|+++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~ 89 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLAT 89 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTT
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhh
Confidence 3455556677889999999999999999988 78999999999999999987 4578999998754
No 431
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.04 E-value=1.6e-05 Score=85.94 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=46.5
Q ss_pred CCCcEEeeccCCcHHHHHHHh-hCCEEEEEeCCHHHHHHHHHHHHHcCCC------cEEEEEccH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAH-RVGMVIGIEMNASAVSDAHRNAEINGIK------NCRFVCAKA 658 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~-~~~~VigVEis~~AIe~Ar~NA~~Ngi~------Nv~fi~gDa 658 (860)
++.+|||||||+|.....++. ...+|+|||+|+.||+.|++.+...+.. +++|+++|+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~ 112 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI 112 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence 467899999999975555444 4579999999999999999998876653 377888876
No 432
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.04 E-value=6e-06 Score=85.88 Aligned_cols=69 Identities=29% Similarity=0.373 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+..+...+.... .++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++. ++.|+++|+.+
T Consensus 36 ~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~ 104 (263)
T 3pfg_A 36 EAADLAALVRRHS--PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRD 104 (263)
T ss_dssp HHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTT
T ss_pred HHHHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHH
Confidence 3444445554443 356799999999999999999998899999999999999998753 78999999754
No 433
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.00 E-value=6.6e-06 Score=83.85 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=54.4
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+..++...++.+|||+|||+|.++..+++... +|+|||+++.+++.|+.++.. .++.++++|+.+
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~ 100 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDK 100 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGG
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhh
Confidence 34445556778999999999999999998876 999999999999999987643 379999999754
No 434
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.00 E-value=8.9e-06 Score=87.24 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=57.7
Q ss_pred HHHHHHHhhhccC--CCCCcEEeeccCCcHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHc-------CCCcEEEEEc
Q 002990 587 EKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEIN-------GIKNCRFVCA 656 (860)
Q Consensus 587 e~L~~~i~~~~~l--~~~~~VLDL~CGtG~i~L~LA~~-~~~VigVEis~~AIe~Ar~NA~~N-------gi~Nv~fi~g 656 (860)
..++..+.+.+.. .++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.|+.++..+ +..++.|+++
T Consensus 18 ~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 18 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA 97 (313)
T ss_dssp HHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred HHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence 3444444444332 36779999999999999999875 579999999999999999998765 4568999999
Q ss_pred cHHH
Q 002990 657 KAED 660 (860)
Q Consensus 657 Dae~ 660 (860)
|+++
T Consensus 98 D~~~ 101 (313)
T 3bgv_A 98 DSSK 101 (313)
T ss_dssp CTTT
T ss_pred cccc
Confidence 9765
No 435
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=98.00 E-value=1.3e-05 Score=86.28 Aligned_cols=69 Identities=17% Similarity=-0.003 Sum_probs=52.6
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
|+..++.... .++..|||+|||+|++++.+++.+.+++|||+++.+++.|++|++...-..-..+.+++
T Consensus 224 l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~~~~~ 292 (297)
T 2zig_A 224 LAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREVPGFSLEVLDGA 292 (297)
T ss_dssp HHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEECC-
T ss_pred HHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHhccccchhhCCcc
Confidence 4444444443 56789999999999999999999999999999999999999999875322223344444
No 436
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.00 E-value=1.4e-05 Score=84.06 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=57.3
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
+.+|..+..+ ....+|||||||+|.+++++. ....++|+|+++.+++.|+.++..+| .+..|..+|+
T Consensus 94 d~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~ 160 (253)
T 3frh_A 94 DTLYDFIFSA---ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDV 160 (253)
T ss_dssp HHHHHHHTSS---CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCT
T ss_pred HHHHHHHhcC---CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeec
Confidence 3456666665 456799999999999999988 66899999999999999999999999 4788998884
No 437
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=97.99 E-value=9.1e-06 Score=82.89 Aligned_cols=67 Identities=12% Similarity=0.261 Sum_probs=55.3
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
++..+..++ .++.+|||+|||+|.++..+++...+|+|||+++.+++.|++++ ...++.|+++|+.+
T Consensus 43 ~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~ 109 (242)
T 3l8d_A 43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSS 109 (242)
T ss_dssp HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTB
T ss_pred HHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhc
Confidence 344444443 46789999999999999999999889999999999999999875 33689999999754
No 438
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=97.98 E-value=3.7e-06 Score=81.33 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=51.5
Q ss_pred hhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEcc
Q 002990 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657 (860)
Q Consensus 595 ~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gD 657 (860)
+.+.+.++.+|||+|||+|.++..+++...+|+|||+++.+++.|+++ ..+++++.+|
T Consensus 11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d 68 (170)
T 3i9f_A 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----FDSVITLSDP 68 (170)
T ss_dssp HHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----CTTSEEESSG
T ss_pred HhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC
Confidence 334567788999999999999999999877999999999999999988 5689999988
No 439
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=97.98 E-value=1e-05 Score=82.17 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+..+...+..+. .++.+|||+|||+|.++..|++.+.+|+|+|+++.+++.|++++ .++.++++|+.+
T Consensus 27 ~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~ 94 (239)
T 3bxo_A 27 ASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-----PDATLHQGDMRD 94 (239)
T ss_dssp HHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTT
T ss_pred HHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHH
Confidence 334444555443 46789999999999999999998889999999999999998874 468999998754
No 440
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=97.98 E-value=8.8e-06 Score=81.11 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=51.1
Q ss_pred CCCCCcEEeeccCCcHHHH-HHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGL-TLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L-~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..++.+|||+|||+|.+++ .++....+|+|||+++.+++.|++++..++ .++.++++|+.+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~ 82 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRK 82 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTS
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhh
Confidence 4567899999999999844 455666799999999999999999998877 478999998753
No 441
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.97 E-value=7.8e-06 Score=95.35 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=66.7
Q ss_pred CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-----CCEEEEEeCCHHHHHHHHHHHHHcCC--
Q 002990 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-----VGMVIGIEMNASAVSDAHRNAEINGI-- 648 (860)
Q Consensus 576 ~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-----~~~VigVEis~~AIe~Ar~NA~~Ngi-- 648 (860)
+.|| +....+..|+..+........+.+|||.|||+|+|.+.+++. ...++|+|+++.++..|+.|+..+|+
T Consensus 197 G~fy-TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 275 (542)
T 3lkd_A 197 GEFY-TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI 275 (542)
T ss_dssp SSCC-CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred Ceec-ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence 4555 556677777776654332456789999999999999998877 35899999999999999999999999
Q ss_pred CcEEEEEccH
Q 002990 649 KNCRFVCAKA 658 (860)
Q Consensus 649 ~Nv~fi~gDa 658 (860)
.++.+.++|.
T Consensus 276 ~~~~I~~gDt 285 (542)
T 3lkd_A 276 ENQFLHNADT 285 (542)
T ss_dssp GGEEEEESCT
T ss_pred CccceEecce
Confidence 5789999984
No 442
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=97.97 E-value=6.4e-06 Score=86.65 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=53.9
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+.+.+.++.+|||+|||+|.++..+++...+|+|+|+++.|++.|+.++ .++.|+.+|+++
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~ 111 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARN 111 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTT
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhh
Confidence 334445667889999999999999999998889999999999999998875 578899998754
No 443
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=97.94 E-value=8.7e-06 Score=86.53 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
.+.+|..+..++ ....+|||||||+|.|+++++.. ..+|+|+|+++.|++.++.|+..||+. ..|...|.
T Consensus 119 lD~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~ 190 (281)
T 3lcv_B 119 LDEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADL 190 (281)
T ss_dssp HHHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCT
T ss_pred HHHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeee
Confidence 345677777765 34678999999999999999876 369999999999999999999999986 78888773
No 444
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=97.90 E-value=1e-05 Score=81.09 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=49.2
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.++.+|||+|||+|.++..+++...+|+|||+++.+++.|+.++ ++.++++|+.+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~ 96 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL------GRPVRTMLFHQ 96 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------TSCCEECCGGG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc------CCceEEeeecc
Confidence 346789999999999999999999889999999999999999987 46678888654
No 445
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=97.89 E-value=7.8e-06 Score=87.61 Aligned_cols=73 Identities=8% Similarity=-0.010 Sum_probs=60.4
Q ss_pred HHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHh
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~~~~l~ 666 (860)
.+++.+..+ .+..+||+|+|||.+++.+.+.+.+++.||.++.+++..++|++. -.+++++++|+...+..++
T Consensus 82 ~yf~~l~~~----n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~ 154 (283)
T 2oo3_A 82 EYISVIKQI----NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALL 154 (283)
T ss_dssp HHHHHHHHH----SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHC
T ss_pred HHHHHHHHh----cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhc
Confidence 344555442 245689999999999999999889999999999999999999875 3679999999988877653
No 446
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=97.85 E-value=1.6e-05 Score=88.34 Aligned_cols=62 Identities=29% Similarity=0.410 Sum_probs=54.4
Q ss_pred CCCCCcEEeeccCCcHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHc-----C-C--CcEEEEEccHHH
Q 002990 599 LGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEIN-----G-I--KNCRFVCAKAED 660 (860)
Q Consensus 599 l~~~~~VLDL~CGtG~i~L~LA~~~---~~VigVEis~~AIe~Ar~NA~~N-----g-i--~Nv~fi~gDae~ 660 (860)
+.++.+|||+|||+|.+++.|++.. .+|+|||+++.+++.|++|++.+ | + .+++|+.+|+++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~ 153 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN 153 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH
Confidence 4577899999999999999999863 49999999999999999998876 4 3 589999999865
No 447
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=97.84 E-value=1.5e-05 Score=87.35 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=57.4
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAE 659 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae 659 (860)
+.+.+.+.++.+|||+|||+|.+++.+++.. .+++++|+ +.+++.|++++..+++. +++|+.+|+.
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 242 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFF 242 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 3444456678899999999999999999875 59999999 99999999999999985 8999999864
No 448
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.83 E-value=2.5e-05 Score=79.99 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=51.4
Q ss_pred CHHHHHHHhhhc-cceeEEeec--------cCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 002990 178 HSDNLKKFLADH-GILYKSAKK--------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (860)
Q Consensus 178 ~~~~Lkk~l~~~-~v~~~~ik~--------~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A~ 238 (860)
.+++|+..|++| .|....+.+ ++++||+||.|.+.++|++||+.|||..|.||.|.|..+.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 467899999999 454455543 1678999999999999999999999999999999998774
No 449
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=97.83 E-value=2.1e-05 Score=78.70 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=54.7
Q ss_pred CcccCCHHHH--HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEE
Q 002990 577 AFFQVNTLAA--EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654 (860)
Q Consensus 577 sFFQvN~~~a--e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi 654 (860)
.|++.+.... ......+..+.. ++.+|||+|||+|.++..+ ...+|+|||+++.+++.|++++ .++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l--~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~ 82 (211)
T 2gs9_A 12 AWYGTPLGAYVIAEEERALKGLLP--PGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRA-----PEATWV 82 (211)
T ss_dssp GGGGSHHHHHHHHHHHHHHHTTCC--CCSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHC-----TTSEEE
T ss_pred HHhcccchhhhHHHHHHHHHHhcC--CCCeEEEECCCCCHhHHhC--CCCeEEEEeCCHHHHHHHHHhC-----CCcEEE
Confidence 3455544333 333334444433 6789999999999999888 3349999999999999999886 578899
Q ss_pred EccHHH
Q 002990 655 CAKAED 660 (860)
Q Consensus 655 ~gDae~ 660 (860)
++|+.+
T Consensus 83 ~~d~~~ 88 (211)
T 2gs9_A 83 RAWGEA 88 (211)
T ss_dssp CCCTTS
T ss_pred Eccccc
Confidence 988643
No 450
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.82 E-value=0.0001 Score=88.78 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=53.4
Q ss_pred ccCCHHHHHHHHHHHhhhcc--CCCCCcEEeeccCCcHHHHHHHhhC-----CEEEEEeCCHHHHHHH--HHHHHHcC
Q 002990 579 FQVNTLAAEKLYSLGGDWAD--LGPDTLLFDVCCGTGTIGLTLAHRV-----GMVIGIEMNASAVSDA--HRNAEING 647 (860)
Q Consensus 579 FQvN~~~ae~L~~~i~~~~~--l~~~~~VLDL~CGtG~i~L~LA~~~-----~~VigVEis~~AIe~A--r~NA~~Ng 647 (860)
|-+....+..|+..+...+. ..++.+|||+|||+|+|.+.+++.. .+++|+|+++.+++.| +.|+..|+
T Consensus 297 FYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~ 374 (878)
T 3s1s_A 297 VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ 374 (878)
T ss_dssp SSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred EcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence 34667777777776433322 2457899999999999999999875 3799999999999999 88876643
No 451
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=97.81 E-value=2.6e-05 Score=82.28 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=44.0
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi 648 (860)
.++..|||+|||+|+.++.+.+.+.+++|||+++.+++.|++|++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 5778999999999999999999999999999999999999999987765
No 452
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=97.81 E-value=3.2e-05 Score=84.72 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=58.7
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~ 660 (860)
.+.+.+...++.+|||+|||+|.++..+++.. .+|+++|+ +.+++.|++++..+++.+ ++|+.+|+.+
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 251 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 251 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcccc
Confidence 44455556778899999999999999999885 49999999 999999999999999865 9999999754
No 453
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.80 E-value=2.7e-05 Score=70.23 Aligned_cols=70 Identities=11% Similarity=0.246 Sum_probs=53.6
Q ss_pred CccccEEEeCCCc-----ccCH----HHHHHHhhhcc-ceeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 002990 163 DVELSKCLVHLPR-----KWHS----DNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (860)
Q Consensus 163 ~~~~ki~VgnLP~-----~~~~----~~Lkk~l~~~~-v~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L 232 (860)
.+.-.|.|..++. .|-. .+|...|..|| +...++...+ +||||++.+.|.+||+ |||+.+.||.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 3445688887763 2433 56888888886 5555544433 9999999999999999 99999999999
Q ss_pred EEEec
Q 002990 233 KVANV 237 (860)
Q Consensus 233 ~V~~A 237 (860)
+|+.-
T Consensus 88 ~V~~k 92 (95)
T 1ufw_A 88 KISGP 92 (95)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99753
No 454
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=97.78 E-value=2.4e-05 Score=84.25 Aligned_cols=60 Identities=20% Similarity=0.368 Sum_probs=54.1
Q ss_pred CCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~ 660 (860)
.++.+|||+|||+|.++..+++. ..+|+++|++ .+++.|++++..+++. +++|+.+|+.+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 67789999999999999999987 4699999999 9999999999999985 69999999643
No 455
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.76 E-value=4.9e-05 Score=79.15 Aligned_cols=66 Identities=27% Similarity=0.254 Sum_probs=52.2
Q ss_pred HHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 587 e~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+.+...+..++. ++.+|||+|||+|.++..|++...+|+|||+++.+++.|+++.. .+ ++++|+.+
T Consensus 42 ~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~ 107 (260)
T 2avn_A 42 RLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAED 107 (260)
T ss_dssp HHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTS
T ss_pred HHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHH
Confidence 334444555443 67899999999999999999988899999999999999998754 22 78887643
No 456
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=97.73 E-value=1.4e-05 Score=83.94 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=41.9
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHc
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN 646 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~~N 646 (860)
...++.+|||||||+|.+++.++... .+|+|+|+|+.|++.|+++++.+
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~ 101 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE 101 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcC
Confidence 44567899999999998888777664 58999999999999999998764
No 457
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.68 E-value=2.8e-05 Score=82.39 Aligned_cols=60 Identities=7% Similarity=-0.215 Sum_probs=49.1
Q ss_pred CCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH--cC--CCcEEEEEccHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI--NG--IKNCRFVCAKAED 660 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~--Ng--i~Nv~fi~gDae~ 660 (860)
...+|||+|||+|.++..++++..+|++||+++.+++.|++++.. ++ -++++++.+|+.+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~ 135 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDL 135 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGS
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHH
Confidence 457899999999999998887667999999999999999987532 12 2478999888643
No 458
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=97.67 E-value=7.7e-05 Score=81.39 Aligned_cols=65 Identities=22% Similarity=0.186 Sum_probs=56.4
Q ss_pred hhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHH
Q 002990 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAE 659 (860)
Q Consensus 594 ~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae 659 (860)
.+.+.+.++.+|||+|||+|.++..+++.. .+++++|+ +.+++.|++|+..+++. +++|+.+|+.
T Consensus 176 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 243 (360)
T 1tw3_A 176 AAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFF 243 (360)
T ss_dssp HHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 344456677899999999999999999875 58999999 99999999999999985 8999999864
No 459
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.66 E-value=6.3e-06 Score=71.29 Aligned_cols=33 Identities=42% Similarity=0.801 Sum_probs=0.0
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCcCccc
Q 002990 77 LHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEE 109 (860)
Q Consensus 77 ~~~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~e 109 (860)
.++.|||.+|.+|...|.|++|++|+|+|+.+|
T Consensus 44 ~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 44 RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ---------------------------------
T ss_pred ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 356899999998888899999999999999876
No 460
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.64 E-value=0.0001 Score=78.92 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=60.6
Q ss_pred HHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 589 L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
|+..+++.+.+.++..+||.+||.|..+..+++...+|+|+|.++.|++.|++ +.. .++.|++++..++
T Consensus 10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l 78 (285)
T 1wg8_A 10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHL 78 (285)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGH
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchH
Confidence 55667777788888999999999999999999987899999999999999988 543 6899999998875
No 461
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=97.64 E-value=9.8e-05 Score=80.31 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=56.0
Q ss_pred HhhhccCCC-CCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHH
Q 002990 593 GGDWADLGP-DTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAE 659 (860)
Q Consensus 593 i~~~~~l~~-~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae 659 (860)
+.+.+.+.+ +.+|||+|||+|.++..+++.. .+++++|+ +.+++.|++++...++. +++|+.+|+.
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 239 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLL 239 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTT
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcc
Confidence 334445555 7899999999999999999874 59999999 88999999999998884 6999999864
No 462
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=97.64 E-value=0.00011 Score=81.06 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=58.5
Q ss_pred HHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 002990 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (860)
Q Consensus 591 ~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae 659 (860)
..+.+.....+..+|||+|||+|.++..+++.. .+++++|+ +.+++.|++++...++ ++|+|+.+|+.
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 262 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF 262 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC
Confidence 344555566678899999999999999999874 58999999 9999999999999887 57999999964
No 463
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=97.62 E-value=3.5e-05 Score=76.51 Aligned_cols=64 Identities=23% Similarity=0.382 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC----CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~----~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
+..|.+....+--+.++.+|||||||+|.+++.+++.. .+|+|||+++.+ ...+++|+++|+.+
T Consensus 7 ~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~ 74 (201)
T 2plw_A 7 AYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGK 74 (201)
T ss_dssp HHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTT
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccc
Confidence 33455544444335678899999999999999999874 689999999832 34679999999765
No 464
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.62 E-value=2e-05 Score=91.95 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=56.2
Q ss_pred CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh-----------------CCEEEEEeCCHHHHHH
Q 002990 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-----------------VGMVIGIEMNASAVSD 638 (860)
Q Consensus 576 ~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~-----------------~~~VigVEis~~AIe~ 638 (860)
+.|| +-...++.|++.+ .+.++ +|||.|||+|.|.+.+++. ...++|+|+++.+++.
T Consensus 225 G~fy-TP~~Vv~lmv~ll----~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~l 298 (544)
T 3khk_A 225 GQYY-TPKSIVTLIVEML----EPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL 298 (544)
T ss_dssp TTTC-CCHHHHHHHHHHH----CCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHH
T ss_pred CeEe-CCHHHHHHHHHHH----hcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHH
Confidence 3444 5566666666554 34444 8999999999999887643 2479999999999999
Q ss_pred HHHHHHHcCCC-cEEEEEcc
Q 002990 639 AHRNAEINGIK-NCRFVCAK 657 (860)
Q Consensus 639 Ar~NA~~Ngi~-Nv~fi~gD 657 (860)
|+.|+..+|+. ++.+.++|
T Consensus 299 A~~Nl~l~gi~~~i~i~~gD 318 (544)
T 3khk_A 299 AAMNMVIRGIDFNFGKKNAD 318 (544)
T ss_dssp HHHHHHHTTCCCBCCSSSCC
T ss_pred HHHHHHHhCCCcccceeccc
Confidence 99999999884 33335555
No 465
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=97.62 E-value=2e-05 Score=81.36 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=43.5
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcC
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEING 647 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~-~VigVEis~~AIe~Ar~NA~~Ng 647 (860)
...++.+|||+|||+|.+++.+++... +|+|+|+++.|++.|++++..++
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~ 103 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEP 103 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCT
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCC
Confidence 335678999999999999999998875 99999999999999999886543
No 466
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=97.61 E-value=2.7e-05 Score=80.96 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=38.9
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA 643 (860)
..+.+|||||||+|.++..|++.+ .+|+|||+++.|++.|+++.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~ 80 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD 80 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence 346799999999999999999886 59999999999999987754
No 467
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=97.61 E-value=0.00013 Score=77.46 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=49.5
Q ss_pred CCCcEEeeccCC---cHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 601 PDTLLFDVCCGT---GTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 601 ~~~~VLDL~CGt---G~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
+..+|||||||+ |.++..+++. ..+|++||+++.|++.|++++.. ..++.|+++|+.+.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~ 140 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDP 140 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCc
Confidence 447899999999 9988777664 36999999999999999998843 35899999998753
No 468
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=97.59 E-value=0.0001 Score=76.83 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 586 ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
...+...+..++. .++.+|||+|||+|.++..+++. ..+|+|||+++.+++.|+++. .++.|+.+|+.+
T Consensus 71 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~ 141 (269)
T 1p91_A 71 RDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHR 141 (269)
T ss_dssp HHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTS
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhh
Confidence 3444444444332 46789999999999999999987 579999999999999998764 467899988653
No 469
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=97.52 E-value=0.0001 Score=79.74 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=54.0
Q ss_pred ccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 002990 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (860)
Q Consensus 597 ~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae 659 (860)
+...+..+|||+|||+|.++..+++.. .+++++|+ +.+++.|++++...++ .+|+|+.+|+.
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 229 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence 344456799999999999999999864 58999999 9999999999999888 57999999863
No 470
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=97.52 E-value=4.6e-05 Score=76.48 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=49.0
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
+.+++. .++.+|||+|||+|.++..+++...+|+|+|+++.+++.|+.++ ..++.+|+.
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~ 83 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIE 83 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-------SEEEESCTT
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-------CcEEEcchh
Confidence 444444 56789999999999999999988889999999999999998754 267888764
No 471
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.50 E-value=8e-05 Score=75.37 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=52.1
Q ss_pred CcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 002990 577 AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656 (860)
Q Consensus 577 sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~g 656 (860)
.||+.+.......+..+..+. ++.+|||+|||+|.++..++.. +|+|+++.+++.|+.+ ++.++++
T Consensus 26 ~~~~~~~~~~~~~~~~l~~~~---~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-------~~~~~~~ 91 (219)
T 1vlm_A 26 RWFLVHRFAYLSELQAVKCLL---PEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-------GVFVLKG 91 (219)
T ss_dssp HHHHHTHHHHHHHHHHHHHHC---CSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-------TCEEEEC
T ss_pred HHHHhcchhHHHHHHHHHHhC---CCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-------CCEEEEc
Confidence 344444444444444444443 3779999999999999999876 9999999999999887 5788998
Q ss_pred cHH
Q 002990 657 KAE 659 (860)
Q Consensus 657 Dae 659 (860)
|+.
T Consensus 92 d~~ 94 (219)
T 1vlm_A 92 TAE 94 (219)
T ss_dssp BTT
T ss_pred ccc
Confidence 864
No 472
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.49 E-value=0.00043 Score=73.26 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=47.2
Q ss_pred CCCcEEeeccCCcHHHHHHHhhC--------------CEEEEEeCCH---HHHH-----------HHHHHHHH-------
Q 002990 601 PDTLLFDVCCGTGTIGLTLAHRV--------------GMVIGIEMNA---SAVS-----------DAHRNAEI------- 645 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~~~--------------~~VigVEis~---~AIe-----------~Ar~NA~~------- 645 (860)
+..+|||+|+|+|..++.+++.. .+++++|..+ ..+. .|+.++..
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 45789999999999988866531 3899999887 4444 56666553
Q ss_pred -------cCCCcEEEEEccHHHHHHHH
Q 002990 646 -------NGIKNCRFVCAKAEDVMGSL 665 (860)
Q Consensus 646 -------Ngi~Nv~fi~gDae~~~~~l 665 (860)
.+..+++++.||+.+.++.+
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~ 166 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQL 166 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGS
T ss_pred hhheeccCCceEEEEEECcHHHHHhhc
Confidence 12347899999999876653
No 473
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=97.41 E-value=0.00011 Score=79.41 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=55.7
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae~ 660 (860)
.+.+.+...+ .+|||+|||+|.++..+++.. .+++++|+ +.+++.|++++...++ .+++|+.+|+.+
T Consensus 159 ~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 228 (334)
T 2ip2_A 159 EIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ 228 (334)
T ss_dssp HHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT
T ss_pred HHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC
Confidence 3444444555 899999999999999999874 58999999 9999999999888776 579999999643
No 474
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=97.39 E-value=0.00018 Score=83.62 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=60.2
Q ss_pred CCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhC---------------CEEEEEeCCHHHHHHHH
Q 002990 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---------------GMVIGIEMNASAVSDAH 640 (860)
Q Consensus 576 ~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~---------------~~VigVEis~~AIe~Ar 640 (860)
+.|| +.......|+ +++.+..+.+|+|.+||+|.|.+.+.++. ..++|+|+++.++..|+
T Consensus 197 Gqfy-TP~~Vv~lmv----~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~ 271 (530)
T 3ufb_A 197 GEFY-TPRPVVRFMV----EVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQ 271 (530)
T ss_dssp CCCC-CCHHHHHHHH----HHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHH
T ss_pred ceEC-CcHHHHHHHH----HhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHH
Confidence 4455 3345554444 45567778899999999999998876531 36999999999999999
Q ss_pred HHHHHcCCCcEEEEEccH
Q 002990 641 RNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 641 ~NA~~Ngi~Nv~fi~gDa 658 (860)
.|+-..|+....+.++|.
T Consensus 272 mNl~lhg~~~~~I~~~dt 289 (530)
T 3ufb_A 272 MNLLLHGLEYPRIDPENS 289 (530)
T ss_dssp HHHHHHTCSCCEEECSCT
T ss_pred HHHHhcCCcccccccccc
Confidence 999999997777777763
No 475
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=97.34 E-value=0.00029 Score=74.76 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=46.7
Q ss_pred CCCCcEEeeccCCcHHHHHHH----hh--CCE--EEEEeCCHHHHHHHHHHHHHc-CCCcEEE--EEccHHHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLA----HR--VGM--VIGIEMNASAVSDAHRNAEIN-GIKNCRF--VCAKAEDVM 662 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA----~~--~~~--VigVEis~~AIe~Ar~NA~~N-gi~Nv~f--i~gDae~~~ 662 (860)
.++.+|||+|||+|.+++.++ .. ... ++|||.|+.|++.|++++... ++.++.| ..++++++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~ 124 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQ 124 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhh
Confidence 456799999999998776433 22 233 399999999999999998754 6666654 577777643
No 476
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=97.34 E-value=0.00026 Score=77.87 Aligned_cols=59 Identities=10% Similarity=-0.045 Sum_probs=52.2
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae 659 (860)
....+|||+|||+|.+++.+++.. .+|+++|+ +.+++.|++++...++ .+|+|+.+|+.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 239 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLL 239 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccc
Confidence 356799999999999999999854 58999999 9999999999998887 57999999963
No 477
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.32 E-value=0.00033 Score=68.23 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEeeccCCc-HHHHHHHh-hCCEEEEEeCCHHHHH
Q 002990 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTG-TIGLTLAH-RVGMVIGIEMNASAVS 637 (860)
Q Consensus 584 ~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG-~i~L~LA~-~~~~VigVEis~~AIe 637 (860)
.+.+.|.+.+.... ..+.+|||+|||.| ..+..|++ ..-.|+++|+++.|+.
T Consensus 20 ~m~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 20 HMWNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG 73 (153)
T ss_dssp HHHHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred hHHHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence 45777888776553 34579999999999 59999998 5668999999999987
No 478
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=97.31 E-value=0.00017 Score=76.19 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=38.0
Q ss_pred CCCcEEeeccCCcHHHHHHHh-hCCEEEEEeCCHHHHHHHHHHHHH
Q 002990 601 PDTLLFDVCCGTGTIGLTLAH-RVGMVIGIEMNASAVSDAHRNAEI 645 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~L~LA~-~~~~VigVEis~~AIe~Ar~NA~~ 645 (860)
++.+|||||||+|.+++.++. .+.+|+|||+++.|++.|+++++.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 116 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE 116 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhh
Confidence 578999999999996665554 367999999999999999987754
No 479
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=97.30 E-value=0.00025 Score=79.06 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHH
Q 002990 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642 (860)
Q Consensus 585 ~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~N 642 (860)
....+...+.+.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|+++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~ 148 (416)
T 4e2x_A 91 HFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK 148 (416)
T ss_dssp HHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc
Confidence 3445566667777777888999999999999999999888999999999999999875
No 480
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.27 E-value=4.2e-05 Score=81.76 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=45.2
Q ss_pred ccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC------cEEEE--EccHHH
Q 002990 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK------NCRFV--CAKAED 660 (860)
Q Consensus 597 ~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~------Nv~fi--~gDae~ 660 (860)
..+.++.+|||||||+|.++..+++. .+|+|||+++ ++..|+++ .+. |+.|+ ++|+.+
T Consensus 78 ~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D~~~ 143 (276)
T 2wa2_A 78 GGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEK----PRLVETFGWNLITFKSKVDVTK 143 (276)
T ss_dssp TSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCC----CCCCCCTTGGGEEEECSCCGGG
T ss_pred CCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhc----hhhhhhcCCCeEEEeccCcHhh
Confidence 44567889999999999999999998 8999999998 54333221 222 78999 888765
No 481
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.27 E-value=0.00014 Score=78.51 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHhhhccCC-CCCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHH
Q 002990 588 KLYSLGGDWADLG-PDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHR 641 (860)
Q Consensus 588 ~L~~~i~~~~~l~-~~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~ 641 (860)
.|...+..+ .+. .+.+|||+|||||.++.+|++.. .+|+|||+++.|++.+.+
T Consensus 72 Kl~~~l~~~-~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r 126 (291)
T 3hp7_A 72 KLEKALAVF-NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR 126 (291)
T ss_dssp HHHHHHHHT-TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH
T ss_pred HHHHHHHhc-CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 444433333 333 56799999999999999998874 699999999999988654
No 482
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=97.20 E-value=0.00038 Score=74.32 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=48.8
Q ss_pred cCCCcccCCHHHHHHHHHHHhhhccCCCCCcEEeeccCCcH----HHHHHHhh-C-----CEEEEEeCCHHHHHHHHHHH
Q 002990 574 SPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT----IGLTLAHR-V-----GMVIGIEMNASAVSDAHRNA 643 (860)
Q Consensus 574 sp~sFFQvN~~~ae~L~~~i~~~~~l~~~~~VLDL~CGtG~----i~L~LA~~-~-----~~VigVEis~~AIe~Ar~NA 643 (860)
..+.||. ++...+.+...++.. .+..+|||+|||||. +++.|+.. . .+|+|+|+|+.|++.|++++
T Consensus 82 ~~t~FfR-d~~~f~~l~~~llp~---~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~ 157 (274)
T 1af7_A 82 NLTAFFR-EAHHFPILAEHARRR---HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI 157 (274)
T ss_dssp CCCCTTT-TTTHHHHHHHHHHHS---CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred cCccccC-ChHHHHHHHHHccCC---CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence 4467776 455556665554432 245689999999998 77777765 2 38999999999999999874
No 483
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.16 E-value=4.7e-05 Score=80.83 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=44.6
Q ss_pred ccCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC------cEEEE--EccHHH
Q 002990 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK------NCRFV--CAKAED 660 (860)
Q Consensus 597 ~~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~------Nv~fi--~gDae~ 660 (860)
..+.++.+|||||||+|.++..+++. .+|+|||+++ ++..|++ ..+. ++.|+ ++|+.+
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~----~~~~~~~~~~~v~~~~~~~D~~~ 135 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHE----VPRITESYGWNIVKFKSRVDIHT 135 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCC----CCCCCCBTTGGGEEEECSCCTTT
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhh----hhhhhhccCCCeEEEecccCHhH
Confidence 44567889999999999999999998 8999999998 5333222 1222 78899 888764
No 484
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.15 E-value=0.00053 Score=73.43 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=52.6
Q ss_pred HHHHHHhhhccC-CCCCcEEeeccCCcH--HHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 002990 588 KLYSLGGDWADL-GPDTLLFDVCCGTGT--IGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (860)
Q Consensus 588 ~L~~~i~~~~~l-~~~~~VLDL~CGtG~--i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~~ 661 (860)
.++..+..++.. .....|||||||+|+ ....++.. ..+|++||+|+.|++.|+..+...+..++.|+++|+.+.
T Consensus 64 ~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~ 143 (277)
T 3giw_A 64 DWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP 143 (277)
T ss_dssp HHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred HHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence 344445555432 244689999999733 33444432 369999999999999999887654445899999999775
No 485
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=97.03 E-value=0.0014 Score=73.70 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=47.1
Q ss_pred HHHHHHhhhccCCCCCcEEeeccC------CcHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 588 KLYSLGGDWADLGPDTLLFDVCCG------TGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 588 ~L~~~i~~~~~l~~~~~VLDL~CG------tG~i~L~LA~~---~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
.+|..++..+. .+..+||||||| +|..++.+++. ..+|+|||+++.|. ....+++|+++|+
T Consensus 204 ~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa 273 (419)
T 3sso_A 204 PHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQ 273 (419)
T ss_dssp HHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCT
T ss_pred HHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecc
Confidence 34544444332 345799999999 78888888765 47999999999973 1346899999998
Q ss_pred HHH
Q 002990 659 EDV 661 (860)
Q Consensus 659 e~~ 661 (860)
.++
T Consensus 274 ~dl 276 (419)
T 3sso_A 274 NDA 276 (419)
T ss_dssp TCH
T ss_pred ccc
Confidence 763
No 486
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=96.98 E-value=0.00032 Score=76.57 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=48.0
Q ss_pred HHhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 002990 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (860)
Q Consensus 592 ~i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi-~Nv~fi~gDae 659 (860)
.+.+.+.+.++.+|||+|||+|.++..+++.. .+++++|+ +.++. +.+++..++ .+++|+.+|+.
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~ 242 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL 242 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC
Confidence 34455566778899999999999999999865 47899999 45554 333333344 46999999863
No 487
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.94 E-value=0.00091 Score=79.53 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=47.3
Q ss_pred CCcEEeeccCCcHHHH---HHHhhCC------------EEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHHH
Q 002990 602 DTLLFDVCCGTGTIGL---TLAHRVG------------MVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDVM 662 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L---~LA~~~~------------~VigVEis~~AIe~Ar~NA~~Ngi~N-v~fi~gDae~~~ 662 (860)
+..|||+|||+|.++. .+++.++ +|+|||.++.|+..++.... ||+.+ |+++.||++++-
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~ 485 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLP 485 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcc
Confidence 4689999999999964 3333233 99999999988877666554 88865 999999999873
No 488
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.00038 Score=60.47 Aligned_cols=31 Identities=26% Similarity=0.612 Sum_probs=27.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCcCccc
Q 002990 78 HPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEE 109 (860)
Q Consensus 78 ~~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~e 109 (860)
...+|+.+|+||.+ |.|.+|++|+|+|....
T Consensus 5 ~~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 5 SSGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp CSCCTTSBCHHHHT-TCCSCTTSSSSBCSCCT
T ss_pred CCCCcceeCHhHcc-CcCCCCCCCCCcccccc
Confidence 45689999999987 99999999999998764
No 489
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=96.91 E-value=0.00046 Score=76.19 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=49.6
Q ss_pred HHHhhhcc-CCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 002990 591 SLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (860)
Q Consensus 591 ~~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae 659 (860)
..+.+.+. +.+..+|||+|||+|.++..+++.. .+++++|+ +.+++.|+.+ .+++|+.+|+.
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~ 256 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMF 256 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTT
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCC
Confidence 33444443 5667899999999999999999865 58999999 9999887642 58999999964
No 490
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=96.89 E-value=0.00015 Score=78.42 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=43.1
Q ss_pred cCCCCCcEEeeccCCcHHHHHHHhhCCEEEEEeC----CHHHHHHHHHHHHHcCCCcEEEEEc-cHH
Q 002990 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEM----NASAVSDAHRNAEINGIKNCRFVCA-KAE 659 (860)
Q Consensus 598 ~l~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEi----s~~AIe~Ar~NA~~Ngi~Nv~fi~g-Dae 659 (860)
.+.++.+|||||||+|.++..|++. ++|+|||+ ++.+++.+. ++..+.+++.|+++ |+.
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~ 142 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVF 142 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTT
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccc
Confidence 3567889999999999999999998 78999999 554432111 11123367999988 754
No 491
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=96.87 E-value=0.00073 Score=74.20 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=52.7
Q ss_pred HhhhccCCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 002990 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (860)
Q Consensus 593 i~~~~~l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDa 658 (860)
+.+...+....+|+|+|||+|.+++.+++.. -+++..|. +.+++.|++++...+.++|+|+.+|+
T Consensus 171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~ 237 (353)
T 4a6d_A 171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDF 237 (353)
T ss_dssp HHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCT
T ss_pred HHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCcc
Confidence 4444455667899999999999999999886 47788886 89999999988766678999999995
No 492
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.84 E-value=0.00038 Score=63.36 Aligned_cols=26 Identities=35% Similarity=0.940 Sum_probs=23.1
Q ss_pred cccccccccccccCCCCCCCCCCCCcC
Q 002990 80 LHKTSLCSYFRKVGTCCHGSTCRYAHG 106 (860)
Q Consensus 80 ~~kt~lc~~~~~~g~c~~g~~C~~ahg 106 (860)
.+||.+|+||. .|.|.+|++|+|+|+
T Consensus 10 ~~k~~lC~~f~-~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 10 PKKRELCKFYI-TGFCARAENCPYMHG 35 (98)
T ss_dssp SCCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred CCCCccCcccc-cCcCCCCCCCCCCCC
Confidence 47999999995 699999999999998
No 493
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0034 Score=58.03 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=60.9
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cc---eeEEeeccCCcceEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 002990 165 ELSKCLVHLPRKWHSDNLKKFLADH-GI---LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (860)
Q Consensus 165 ~~ki~VgnLP~~~~~~~Lkk~l~~~-~v---~~~~ik~~r~~gFgFVtF~s~Eea~kAIe~LnG~~~kGr~L~V~~A 237 (860)
+-.|-|-|||-.++...++.|++++ .+ ...++.....-+=|+|.|.+...|-||.=.|||++|.||+|+|...
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 3459999999999999999999988 22 2234444455577999999999999999999999999999999865
No 494
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=96.75 E-value=0.0021 Score=76.17 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=47.5
Q ss_pred CCCcEEeeccCCcHHH---HHHHhhC-C--EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 002990 601 PDTLLFDVCCGTGTIG---LTLAHRV-G--MVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (860)
Q Consensus 601 ~~~~VLDL~CGtG~i~---L~LA~~~-~--~VigVEis~~AIe~Ar~NA~~Ngi~-Nv~fi~gDae~~ 661 (860)
....|||+|||+|.+. +.+++.+ . +|+|||.++ +...|++..+.||+. .|+++.||++++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev 423 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREW 423 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceec
Confidence 3457999999999994 4444443 2 789999997 556789999999995 599999998874
No 495
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=96.74 E-value=0.00074 Score=74.45 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=49.8
Q ss_pred HHHhhhcc-CCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 591 SLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 591 ~~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
..+.+.+. ..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.|+. ..+|+|+.+|+.+
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~ 255 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK 255 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC
Confidence 33444443 5677899999999999999999864 58999999 899887764 2589999999653
No 496
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=96.66 E-value=0.0014 Score=71.67 Aligned_cols=43 Identities=21% Similarity=0.126 Sum_probs=37.9
Q ss_pred CCcEEeeccCCcHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHH
Q 002990 602 DTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAE 644 (860)
Q Consensus 602 ~~~VLDL~CGtG~i~L~LA~~~-~~VigVEis~~AIe~Ar~NA~ 644 (860)
+.++||||||+|.+++.+.+.+ ..|.++|+++.|++..+.|..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~ 54 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG 54 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence 4589999999999999998764 678899999999999999974
No 497
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.64 E-value=0.0014 Score=72.42 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHhhhccCC------CCCcEEeeccCCcHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEE
Q 002990 581 VNTLAAEKLYSLGGDWADLG------PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCR 652 (860)
Q Consensus 581 vN~~~ae~L~~~i~~~~~l~------~~~~VLDL~CGtG~i~L~LA~~--~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~ 652 (860)
.|...+..+++.+ ++. ++..|||+|.|.|++|..|+.. +++|++||+++..+...+... ...|++
T Consensus 36 ~d~~i~~~Iv~~~----~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~---~~~~l~ 108 (353)
T 1i4w_A 36 WNPTVYNKIFDKL----DLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF---EGSPLQ 108 (353)
T ss_dssp CCHHHHHHHHHHH----CGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT---TTSSCE
T ss_pred CCHHHHHHHHHhc----cCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc---cCCCEE
Confidence 4566666655544 343 3578999999999999999976 679999999999999988766 246899
Q ss_pred EEEccHHHH
Q 002990 653 FVCAKAEDV 661 (860)
Q Consensus 653 fi~gDae~~ 661 (860)
++.+|+.++
T Consensus 109 ii~~D~l~~ 117 (353)
T 1i4w_A 109 ILKRDPYDW 117 (353)
T ss_dssp EECSCTTCH
T ss_pred EEECCccch
Confidence 999999654
No 498
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=96.63 E-value=0.0012 Score=72.62 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=49.2
Q ss_pred HHhhhcc-CCCCCcEEeeccCCcHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 592 LGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 592 ~i~~~~~-l~~~~~VLDL~CGtG~i~L~LA~~~--~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.+.+.+. +.+..+|||+|||+|.++..+++.. .+++++|+ +.+++.|+. ..+++|+.+|+.+
T Consensus 199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 263 (372)
T 1fp1_D 199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA 263 (372)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT
T ss_pred HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc
Confidence 3444433 5667899999999999999999875 47889999 999988764 3579999999753
No 499
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.59 E-value=0.00065 Score=58.34 Aligned_cols=30 Identities=27% Similarity=0.643 Sum_probs=26.1
Q ss_pred CCcccccccccccccCCCCCCCCCCCCcCcc
Q 002990 78 HPLHKTSLCSYFRKVGTCCHGSTCRYAHGEE 108 (860)
Q Consensus 78 ~~~~kt~lc~~~~~~g~c~~g~~C~~ahg~~ 108 (860)
....|+.+|+||.+ |.|.+|+.|+|+|...
T Consensus 11 ~~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 11 MSGEKTVVCKHWLR-GLCKKGDQCEFLHEYD 40 (72)
T ss_dssp SSCCCCSBCHHHHT-TCCCCGGGSSSBCSCC
T ss_pred CCCCcCeeCHHHhc-CCCCCCCCCCCccccc
Confidence 34578899999988 9999999999999864
No 500
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=96.55 E-value=0.00081 Score=73.19 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=48.9
Q ss_pred CCCCcEEeeccCCcHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 002990 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (860)
Q Consensus 600 ~~~~~VLDL~CGtG~i~L~LA~~~~~VigVEis~~AIe~Ar~NA~~Ngi~Nv~fi~gDae~ 660 (860)
.++..|||.|||+|+.++.+.+...+.+|+|+++.+++.|+.+++..+.. ...+++|+.+
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~ 310 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNIS-EEKITDIYNR 310 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSC-HHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccc-hHHHHHHHHH
Confidence 57889999999999999999999999999999999999999988765542 3333344333
Done!