BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002993
(860 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P91927|A60DA_DROME LETM1 and EF-hand domain-containing protein anon-60Da,
mitochondrial OS=Drosophila melanogaster GN=Letm1 PE=2
SV=2
Length = 1013
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 781 WQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVG 840
+ G +LL +DV +LL R L G LT++E + LQRT +DL ++P V +++P +
Sbjct: 193 YHGFRLLFIDVAICSKLLWRVLNGKTLTRRENKQLQRTTSDLFRLIPFSVFIIVPFMEL- 251
Query: 841 HAAMLAAIQRYVPGL 855
+L ++ PG+
Sbjct: 252 ---LLPLFIKFFPGM 263
>sp|Q06493|YLH47_YEAST LETM1 domain-containing protein YLH47, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YLH47 PE=1 SV=1
Length = 454
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%)
Query: 772 KLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVL 831
K+++ W G++LL +++ + +LL ++ G LT++E L+RT D+ +VP
Sbjct: 84 KMQKALRHYWDGSKLLGLEIKISSKLLMKSAAGYPLTRRENLQLKRTTQDIVRLVPFAAF 143
Query: 832 MLLP 835
+++P
Sbjct: 144 LIIP 147
>sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mdm28 PE=2 SV=3
Length = 485
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 772 KLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASV 825
++K + W GT+LL V++ + +L+ + VG ELT++E + L RTL D+ +
Sbjct: 121 RVKGGVLHFWDGTKLLGVEIKISSKLVYKMAVGYELTRRESRQLTRTLKDIGRL 174
>sp|Q08179|MDM38_YEAST Mitochondrial distribution and morphology protein 38
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MDM38 PE=1 SV=1
Length = 573
Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 772 KLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVL 831
K+K GT+LL ++ + +LL + G EL+++E+ L+RT+ D+ ++P
Sbjct: 86 KVKHALKHYANGTKLLGYEIKVSTKLLIKFAQGYELSRRERNQLRRTMGDVFRLIPFSAF 145
Query: 832 MLLP 835
+++P
Sbjct: 146 LIIP 149
>sp|Q0VA06|LETM1_XENTR LETM1 and EF-hand domain-containing protein 1, mitochondrial
OS=Xenopus tropicalis GN=letm1 PE=2 SV=1
Length = 760
Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 768 KSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVP 827
K ID++K + G +LL +D A +LR+ L G ++++E++ R DL +VP
Sbjct: 158 KVIDEIKH----YYHGFRLLWIDTKIAARMLRQILNGHAMSRRERRQFLRICADLFRLVP 213
Query: 828 IGVLMLLP 835
V +++P
Sbjct: 214 FLVFVIVP 221
>sp|O34673|UXAA_BACSU Altronate dehydratase OS=Bacillus subtilis (strain 168) GN=uxaA
PE=2 SV=2
Length = 497
Score = 36.6 bits (83), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 459 DWLLFYPGSTGM---PKQSHGHKSKREDPPNAEAIPQVLDVCSHWMQSFIKHSKWL-ENP 514
D+L+ GST + P+ + N E +++D+ + + Q FIKH + + ENP
Sbjct: 285 DYLIAQGGSTVLTEVPEMFGAETILMQRAANEEVFHKIVDLINDFKQYFIKHDQPVYENP 344
Query: 515 SNVKAAKFLSKGYDKLMDCMKEMGIA 540
S A +S DK + C ++ GI+
Sbjct: 345 SPGNKAGGISTLEDKSLGCTQKAGIS 370
>sp|Q3BXK9|CCA_XANC5 Multifunctional CCA protein OS=Xanthomonas campestris pv.
vesicatoria (strain 85-10) GN=cca PE=3 SV=1
Length = 410
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 192 DRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRF 251
D D V ++ LLR+ + ++ RD+ + +L + Y Q + + E R
Sbjct: 77 DADPSVTLEEDLLRRDFTINAIARDEETGELFDPYNGARDLQARVLRHVGPAFVEDPVRV 136
Query: 252 TAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKV--------SCSQFSSMIS 303
A + LG ++DT+ LM + + L P +V SC+Q S+ +
Sbjct: 137 LRAARFMARLAPLGFTLAADTAALMREMAASGELDSLVPERVWQELRRALSCAQPSAFLR 196
Query: 304 DITGRLMDTLVDLVPISQAYYSIK---------DIGLHREFLAHFGPR 342
+ D L ++P A Y + D G+H+E ++ R
Sbjct: 197 TLHD--ADALRVILPEVDALYGVPQRAEFHPEVDTGIHQEMVSDMAAR 242
>sp|Q5H2E1|SYI_XANOR Isoleucine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=ileS PE=3 SV=1
Length = 943
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 626 SLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGL---FGFFTRPSIR 682
S++Q +D+ +I WY ++RIA +V RP+ + + R F
Sbjct: 442 SMEQANLRADALKAIESVHWYPSWGQARIAGMVDGRPDWTISRQRTWGVPIALFVHRETG 501
Query: 683 KPKPQESEYCEQTGSNIGIANSES-NEIHRFELLRNELMELEK 724
+P P+ +E Q + + + + ELL +E + +K
Sbjct: 502 EPHPRSTELLRQVADRVELGGVDVWYTLDAAELLGDEAADYDK 544
>sp|Q2P5B0|SYI_XANOM Isoleucine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=ileS PE=3 SV=1
Length = 943
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 626 SLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGL---FGFFTRPSIR 682
S++Q +D+ +I WY ++RIA +V RP+ + + R F
Sbjct: 442 SMEQANLRADALKAIESVHWYPSWGQARIAGMVDGRPDWTISRQRTWGVPIALFVHRETG 501
Query: 683 KPKPQESEYCEQTGSNIGIANSES-NEIHRFELLRNELMELEK 724
+P P+ +E Q + + + + ELL +E + +K
Sbjct: 502 EPHPRSTELLRQVADRVELGGVDVWYTLDAAELLGDEAADYDK 544
>sp|Q8PPG9|CCA_XANAC Multifunctional CCA protein OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=cca PE=3 SV=1
Length = 410
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 192 DRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRF 251
D D V ++ LLR+ + ++ RD+ + +L + Y Q + + E R
Sbjct: 77 DADPSVTLEEDLLRRDFTINAIARDEDTGQLFDPYNGVRDLQARVLRHVGPAFIEDPVRV 136
Query: 252 TAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKV--------SCSQFSSMIS 303
A + LG +++T+ LM + + L P +V SC+Q S+ +
Sbjct: 137 LRAARFMARLAPLGFSLAAETAALMRDMAAGGELDSLVPERVWQELRRALSCAQPSAFLR 196
Query: 304 DITGRLMDTLVDLVPISQAYYSIK---------DIGLHREFLAHFGPR 342
+ D L ++P A Y + D G+H+E ++ R
Sbjct: 197 TLHD--ADALRVILPEVDALYGVPQRADFHPEVDTGIHQEMVSDIAAR 242
>sp|Q3BW42|SYI_XANC5 Isoleucine--tRNA ligase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=ileS PE=3 SV=1
Length = 943
Score = 35.0 bits (79), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 626 SLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGL---FGFFTRPSIR 682
S++Q +D+ +I WY ++RIA +V RP+ + + R F
Sbjct: 442 SMEQANLRADALKAIENVHWYPSWGQARIAGMVDGRPDWTISRQRTWGVPIALFVHRETG 501
Query: 683 KPKPQESEYCEQTGSNI 699
+P P+ +E Q +
Sbjct: 502 EPHPRSTELLRQVADRV 518
>sp|Q8PN19|SYI_XANAC Isoleucine--tRNA ligase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=ileS PE=3 SV=1
Length = 943
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 626 SLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGL---FGFFTRPSIR 682
S++Q +D+ +I WY ++RIA +V RP+ + + R F
Sbjct: 442 SMEQANLRADALKAIENVHWYPSWGQARIAGMVDGRPDWTISRQRTWGVPIALFVHRETG 501
Query: 683 KPKPQESEYCEQTGSNI 699
+P P+ +E Q +
Sbjct: 502 EPHPRSTELLRQVADRV 518
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,703,937
Number of Sequences: 539616
Number of extensions: 12253187
Number of successful extensions: 38867
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 38794
Number of HSP's gapped (non-prelim): 151
length of query: 860
length of database: 191,569,459
effective HSP length: 126
effective length of query: 734
effective length of database: 123,577,843
effective search space: 90706136762
effective search space used: 90706136762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)