Query 002993
Match_columns 860
No_of_seqs 115 out of 199
Neff 2.6
Searched_HMMs 46136
Date Thu Mar 28 14:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1043 Ca2+-binding transmemb 100.0 1.1E-57 2.3E-62 495.2 4.6 495 105-686 2-498 (499)
2 KOG1043 Ca2+-binding transmemb 99.9 9E-25 2E-29 239.1 5.4 88 768-859 121-208 (499)
3 PF07766 LETM1: LETM1-like pro 99.9 3.5E-23 7.5E-28 211.1 0.0 89 767-859 2-90 (268)
4 KOG4263 Putative receptor CCR1 94.2 0.058 1.3E-06 57.6 4.7 74 778-855 62-139 (299)
5 KOG2077 JNK/SAPK-associated pr 80.1 3.2 6.9E-05 49.1 5.9 68 523-614 306-374 (832)
6 PF11004 Kdo_hydroxy: 3-deoxy- 42.8 30 0.00066 38.0 4.2 47 420-474 8-54 (281)
7 PF08580 KAR9: Yeast cortical 40.7 50 0.0011 39.9 5.9 52 563-614 55-119 (683)
8 PF05205 COMPASS-Shg1: COMPASS 35.1 68 0.0015 30.1 4.7 94 103-219 11-104 (106)
9 cd09236 V_AnPalA_UmRIM20_like 30.9 4.6E+02 0.0099 29.1 10.8 100 506-626 114-224 (353)
10 PF13949 ALIX_LYPXL_bnd: ALIX 30.7 78 0.0017 32.9 4.8 98 508-625 68-172 (296)
11 PF09177 Syntaxin-6_N: Syntaxi 24.5 4.6E+02 0.01 23.8 8.0 60 563-622 3-64 (97)
12 PF12968 DUF3856: Domain of Un 24.0 1.3E+02 0.0028 30.5 4.7 74 522-602 12-106 (144)
13 COG1510 Predicted transcriptio 22.8 1.5E+02 0.0033 31.0 5.1 103 516-618 30-163 (177)
14 PRK00420 hypothetical protein; 22.5 1.6E+02 0.0035 28.6 4.9 43 567-610 67-111 (112)
15 PF12761 End3: Actin cytoskele 22.3 2.1E+02 0.0046 30.3 6.1 72 555-629 100-192 (195)
16 COG2902 NAD-specific glutamate 22.0 1.5E+02 0.0033 39.1 5.8 62 613-701 1065-1126(1592)
No 1
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=100.00 E-value=1.1e-57 Score=495.23 Aligned_cols=495 Identities=30% Similarity=0.304 Sum_probs=462.7
Q ss_pred HHHHHHHhhccccCCCcccchHHHHHHHHHHHHHHHHhhcccCCccccccccccchhhhHHHHhhHHHHHHHHHHHHhhh
Q 002993 105 VEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEI 184 (860)
Q Consensus 105 ~~emr~kl~~slq~~~~~~~LVqsLHdaAr~felav~~~~~~s~~swl~~aWlg~D~naW~K~LsYQaaVysLLqaaiei 184 (860)
...||.++-+++|++..+..+- +++|.+++|..+....+..+ +|.++|+++.+||+++|+++|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~----~g~r~~~~~~~~~~t~~~~~--------~d~~~~~~~~s~~~s~~~~~~~~~~~ 69 (499)
T KOG1043|consen 2 SSVYRSKLLGSLQDENNEGILR----DGARFRELATKEKITSSRLP--------VDKLAWVKTESYKASLYSLLQAVNLI 69 (499)
T ss_pred hhHHHHHHhccccccccchhhh----hhHHHHHHHHHhhccccccc--------HHHHHHHhhhccchhhhhhhhhcccc
Confidence 5689999999999999888877 99999999999999999988 99999999999999999999999999
Q ss_pred hccCCCCCCcchHHHHHHhhhhhchhHHHHHhHhhccCCccchhhhcccchhhhhHhhhccccccccccceecccCCccc
Q 002993 185 SSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAVSGKGMSL 264 (860)
Q Consensus 185 ssrg~~rDRdvnvfVqrsL~~~~apLe~~Ir~~Ls~r~P~a~eWfws~Q~P~vv~sFVn~le~d~rf~~at~~~~~~~~~ 264 (860)
+++|+.+|.+.|++|+|++.++-+|+...|+..||+.||+.++|+|.+++|..+..|+ ++++||..+|.++..+...
T Consensus 70 ~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~lss~~a~~~~~~~a~~k~s~~~~~~---~~lqhy~~gtkll~~e~ki 146 (499)
T KOG1043|consen 70 SARGNASDLDSSVKVLRELVQQAAPLALKIKELLSSKHAKKTEAFWAKEKPSLKTKFV---KGLQHYVDGTKLLGKEIKI 146 (499)
T ss_pred ccccchhhhhhhHHHhHHHhhhccchhhhchhhccccchhhccccccccCccHHHHHH---HhhHHHhhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 8999999999998887765
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcCCcccccccchhhhhhHHHHHHhhhccceehhhHHHHHhhhhhhHHHHhhcCCCcc
Q 002993 265 GSGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRAS 344 (860)
Q Consensus 265 ~~~~~SdvslL~Lalsc~aAi~kLGsakVSCp~F~S~i~d~~grLMdml~~fVpv~q~Y~~~k~iGl~rEFL~hFGpraa 344 (860)
++. .|++++..|..+..+.|+.+-+|+.||.+||+.. .-+||..++|+-+.-.+|.++|.+|||+++.
T Consensus 147 sak-----lLlkll~g~~ltrrE~~qL~rt~~d~frLvPfs~-------flivPf~El~Lp~~lKlfp~~lpstfq~~kk 214 (499)
T KOG1043|consen 147 SAK-----LLLKLLKGYELTRRERGQLKRTCSDIFRLVPFSK-------FLIVPFMELLLPIFLKLFPNDLPSTFQESKK 214 (499)
T ss_pred hHH-----HHHHHHccCeeeHHHhhhHHhhccchheecccee-------eeeeehHHHHhHHHHhhccccchhhHHHHHH
Confidence 422 8999999999999999999999999999999988 7899999999999999999999999999999
Q ss_pred cccccCCCCccceehhHHHHHHHHHHHHhHhhhhhccccchhHHHHhhhhhHHHHHHHhccchhhhhhcCCCCCcchhHH
Q 002993 345 ACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIK 424 (860)
Q Consensus 345 ~~~~~~d~~~eEv~FWI~L~QkqL~~AidRE~IwsrLttsesiEvlEkDLAifGfFiaLGRsTr~fLs~~g~~~ldd~ie 424 (860)
.|.++++ ..+|+.||.+++|++|+++++++++|+++.++++| +++++++.||| +++|.+|+.++.-+++-+.|-+++
T Consensus 215 ~~~k~~k-~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~-~fd~f~~kvr~-~~~~~S~eeii~~aklf~de~~Ld 291 (499)
T KOG1043|consen 215 EEEKLSK-KYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI-EFDRFLGKVRF-IGLGVSTEEIIAFAKLFSDEITLD 291 (499)
T ss_pred HHHHhhh-hHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-HHHHHHHHhcc-cCCCccHHHHHHHHHHhccchhhh
Confidence 9999999 88999999999999999999999999999999999 99999999999 999999999999999999999999
Q ss_pred HHHHHHHcceEEEecccCccc--ceeeeeeeeeccccccccCCCCCCCCCCccCCCCCCCCCCCcccchhhhhhhhhhhh
Q 002993 425 SLIRYLIGGSVLYYPQLSSIS--SYQLYVEVVCEELDWLLFYPGSTGMPKQSHGHKSKREDPPNAEAIPQVLDVCSHWMQ 502 (860)
Q Consensus 425 ~~lrYL~gGsvl~YPQLSsIs--sYQLyvEVVcEEl~WLpFYp~~~~~~~~~~~h~~~~~~~~~~e~i~~vl~VCs~W~~ 502 (860)
++.|..++|...|||+.+-++ +|+.| +-
T Consensus 292 nLsR~qL~al~k~m~l~~~Gt~~~lr~~--------------------------------------------------lr 321 (499)
T KOG1043|consen 292 NLSRPQLVALCKYMDLNSFGTDKLLRYQ--------------------------------------------------LR 321 (499)
T ss_pred ccCHHHHHHHHHhhcccccCchHHHHHH--------------------------------------------------HH
Confidence 999999999999999988765 55544 34
Q ss_pred hhhhhcccccCCCchhHHHHHhhhhhhHHHHHHHhhhhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 002993 503 SFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQ 582 (860)
Q Consensus 503 sFikyS~w~e~Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~Al~rlE~Llq 582 (860)
+||+|.+|-.+|.++++|.++++++.+...|.++.+.+..-.++...++ .+.-+..++|+++.+|..+|.|.+.+++
T Consensus 322 ~kik~ik~dD~~I~~eg~v~~ls~~el~~aC~~rgmra~gv~~e~l~~q---l~~wldlsl~~~vps~lL~Lsr~~~~~~ 398 (499)
T KOG1043|consen 322 KKIKEIKKDDKHIATEGAVESLSLLELQIACRERGMRALGVSEERLREQ---LRVWLDLSLDKKVPSVLLLLSRTFSLGQ 398 (499)
T ss_pred HHHHHhcccccchhhhhhhhHhhHHHHHHHHHhhhcchhccchhhhhHH---HHHHHhhhccccCchHHHHHhhhhhhhh
Confidence 6899999999999999999999999999999999988875544422222 2333456899999999999999999999
Q ss_pred HhhcccCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCccccccccccCCCcccccccccCC
Q 002993 583 ALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAASLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRP 662 (860)
Q Consensus 583 el~~sss~sgke~lkaacsDLekIr~LkkeaEfleasfraka~~l~qg~~~~~~~~~~~~~~~y~~~k~~~~~~v~ld~~ 662 (860)
+.+.++|.+|+.+. ++|+|+++++++|++++++++++|+++..+++|+|+...+++-.++.+|..+|+.++.+..-++.
T Consensus 399 ~~~~~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~~~~~e~eee~~~~~~~k~~~~~~~~~~~~ 477 (499)
T KOG1043|consen 399 NSKAPSSSSGKLQI-AAPDDLEKLEKLKKEESELGAVDRKKKLELLREGEEIISEEEEEEEKQYGRAKDALKEKESAEKA 477 (499)
T ss_pred cccCCchhhhHhhh-hccccHHHhcccccccccccccchHHHHHhhhccccccchhhhccccccccccccccCCCccccc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999887666
Q ss_pred ccccccccCcccccccCCCCCCCC
Q 002993 663 NEVVCKSRGLFGFFTRPSIRKPKP 686 (860)
Q Consensus 663 ~~~~~~~~~~w~~f~r~~~~k~~~ 686 (860)
. ....++|++|.+...++++|
T Consensus 478 ~---~~~~s~~~~~~~~~~~~~~~ 498 (499)
T KOG1043|consen 478 A---SQAKSPWGFFVRQERKKALP 498 (499)
T ss_pred c---cccccccccccchhhhcccC
Confidence 6 67899999999999998876
No 2
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=99.90 E-value=9e-25 Score=239.10 Aligned_cols=88 Identities=25% Similarity=0.364 Sum_probs=86.1
Q ss_pred HHHHHHhhccceeeeeeehhhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhccccccceeeeehhhhhhhhHHHHHH
Q 002993 768 KSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAA 847 (860)
Q Consensus 768 ks~~KiK~e~~hyw~GtKLLg~DIkiA~rLL~R~l~G~~LTrRErkqL~RT~~Dl~RLVPFsvFIIIPF~E~lHaaiLPv 847 (860)
..+++++++++|||+||||||+|+++|.++||++++|++|||||++||+||+.|+||||||++|+||||||++ ||+
T Consensus 121 s~~~~~~~~lqhy~~gtkll~~e~kisaklLlkll~g~~ltrrE~~qL~rt~~d~frLvPfs~flivPf~El~----Lp~ 196 (499)
T KOG1043|consen 121 SLKTKFVKGLQHYVDGTKLLGKEIKISAKLLLKLLKGYELTRRERGQLKRTCSDIFRLVPFSKFLIVPFMELL----LPI 196 (499)
T ss_pred cHHHHHHHhhHHHhhhhhhhhhhhhhhHHHHHHHHccCeeeHHHhhhHHhhccchheeccceeeeeeehHHHH----hHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHcCCCCCCC
Q 002993 848 IQRYVPGLKGWI 859 (860)
Q Consensus 848 ilKlFPnMLPST 859 (860)
++|+||||+|||
T Consensus 197 ~lKlfp~~lpst 208 (499)
T KOG1043|consen 197 FLKLFPNDLPST 208 (499)
T ss_pred HHhhccccchhh
Confidence 999999999998
No 3
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=99.86 E-value=3.5e-23 Score=211.06 Aligned_cols=89 Identities=28% Similarity=0.480 Sum_probs=0.0
Q ss_pred HHHHHHHhhccceeeeeeehhhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhccccccceeeeehhhhhhhhHHHHH
Q 002993 767 GKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLA 846 (860)
Q Consensus 767 kks~~KiK~e~~hyw~GtKLLg~DIkiA~rLL~R~l~G~~LTrRErkqL~RT~~Dl~RLVPFsvFIIIPF~E~lHaaiLP 846 (860)
++.|.+++++.+|||+|+|+||.|++++.++..|+..|+.||+||+++|+||.+|++++|||+||+||||+|++ ||
T Consensus 2 ~~~~~~~~~~~~~~~~G~kll~~d~k~~~~l~~~~~~g~~LtrrE~~~l~~~~~D~~kliP~~i~~~iPf~~~l----lp 77 (268)
T PF07766_consen 2 EKLWPKAKKEYKHFWDGFKLLWADIKISRRLKKRVKQGHQLTRRERKQLRRTRRDLLKLIPFLIFLIIPFAEYL----LP 77 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHcCCCCCCC
Q 002993 847 AIQRYVPGLKGWI 859 (860)
Q Consensus 847 vilKlFPnMLPST 859 (860)
++++|||+|||||
T Consensus 78 ~~~~~fP~lLPst 90 (268)
T PF07766_consen 78 LLVKYFPNLLPST 90 (268)
T ss_dssp -------------
T ss_pred HHHHHhhhcChHH
Confidence 9999999999998
No 4
>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]
Probab=94.18 E-value=0.058 Score=57.63 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=65.8
Q ss_pred ceeeeeeehhhhhHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhhhccccccceeeeehhhhhhhhHHHHHHHHHHcC
Q 002993 778 MDVWQGTQLLAVDVGAAMELLRRALVG----DELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVP 853 (860)
Q Consensus 778 ~hyw~GtKLLg~DIkiA~rLL~R~l~G----~~LTrRErkqL~RT~~Dl~RLVPFsvFIIIPF~E~lHaaiLPvilKlFP 853 (860)
.-+..|.|-+|.|+|.+.++-.-+..| +.|+++|-..|+.--.|+-...|.+||.++||+-.. +-++.=|||
T Consensus 62 r~f~~G~~~~faD~K~~~kikr~~~~~~~k~~~L~~~ElE~l~Qmp~d~~K~a~~~i~~~~P~~~Y~----ff~li~~fP 137 (299)
T KOG4263|consen 62 RTFLEGSRWCFADVKMYFKIKRAVATGQKKLTDLSVEELETLVQMPVDGPKMAIVTIFLPVPLSVYV----FFFLIIFFP 137 (299)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCccchhhCCHHHHHHHHhccccccceeeeeeccCcchHHHH----HHHHHHHHH
Confidence 445679999999999999998888887 579999999999999999999999999999999988 777777888
Q ss_pred CC
Q 002993 854 GL 855 (860)
Q Consensus 854 nM 855 (860)
-.
T Consensus 138 R~ 139 (299)
T KOG4263|consen 138 RL 139 (299)
T ss_pred HH
Confidence 53
No 5
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=80.09 E-value=3.2 Score=49.11 Aligned_cols=68 Identities=29% Similarity=0.478 Sum_probs=48.6
Q ss_pred HhhhhhhHHHHHHHhhhhhcccc-ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHhhh
Q 002993 523 LSKGYDKLMDCMKEMGIARNGMI-ESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACS 601 (860)
Q Consensus 523 Lskg~~~L~eC~ee~~~~~~~~~-~~~~~~~~~~~~~e~~s~dkalesv~~Al~rlE~Llqel~~sss~sgke~lkaacs 601 (860)
|++-.+.|.+-..-|+|.+|+.. ++.+-. .|-+...-.+|+++.|-+|||+-..||.
T Consensus 306 LilENsqLLetKNALNiVKNDLIakVDeL~------~E~~vLrgElea~kqak~Klee~i~elE---------------- 363 (832)
T KOG2077|consen 306 LILENSQLLETKNALNIVKNDLIAKVDELT------CEKDVLRGELEAVKQAKLKLEEKIRELE---------------- 363 (832)
T ss_pred HHHhhHHHHhhhhHHHHHHHHHHHHHHhhc------cHHHHHhhHHHHHHHHHHHHHHHHHHHH----------------
Confidence 45556778888889999998744 333222 2445677889999999999988777764
Q ss_pred hHHHHHHHHHHHH
Q 002993 602 DLEKIRKLKKEAE 614 (860)
Q Consensus 602 DLekIr~LkkeaE 614 (860)
|.||++|.||+
T Consensus 364 --EElk~~k~ea~ 374 (832)
T KOG2077|consen 364 --EELKKAKAEAE 374 (832)
T ss_pred --HHHHHHHHHHH
Confidence 56777888777
No 6
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=42.79 E-value=30 Score=38.03 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHcceEEEecccCcccceeeeeeeeeccccccccCCCCCCCCCCc
Q 002993 420 DDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGMPKQS 474 (860)
Q Consensus 420 dd~ie~~lrYL~gGsvl~YPQLSsIssYQLyvEVVcEEl~WLpFYp~~~~~~~~~ 474 (860)
.++=++.++-||+|.|||+|+|. .+.-|+|-.-|.=.-.+....|.+
T Consensus 8 ~~~~~~~~~~LE~G~VL~fP~l~--------F~l~~~E~~fL~p~~~d~k~KNIs 54 (281)
T PF11004_consen 8 EEPQRDAIEALEQGKVLYFPQLR--------FPLSPEERAFLDPAIVDPKRKNIS 54 (281)
T ss_pred cchHHHHHHHhhCCCEEEeCCCC--------CCCChhHHhhcChhhhCCCCCcee
Confidence 56678899999999999999875 566788887665444444444444
No 7
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=40.70 E-value=50 Score=39.91 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----hcccC---cchHHHHHHhhhhHHH-----HHHHHHHHH
Q 002993 563 FDKALESVEEALIRLEKLLQAL-----HVSSS---NSGKEQLKAACSDLEK-----IRKLKKEAE 614 (860)
Q Consensus 563 ~dkalesv~~Al~rlE~Llqel-----~~sss---~sgke~lkaacsDLek-----Ir~LkkeaE 614 (860)
+.+-++.||.|+.|||.|+... ++..- +.+.++|..+|+|+|- |+.+|+-.|
T Consensus 55 L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~~vK~qve 119 (683)
T PF08580_consen 55 LREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMELDVKKTLISVKKQVE 119 (683)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999774 22211 1178899999999998 777777654
No 8
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=35.12 E-value=68 Score=30.10 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=66.4
Q ss_pred chHHHHHHHhhccccCCCcccchHHHHHHHHHHHHHHHHhhcccCCccccccccccchhhhHHHHhhHHHHHHHHHHHHh
Q 002993 103 SDVEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAAC 182 (860)
Q Consensus 103 s~~~emr~kl~~slq~~~~~~~LVqsLHdaAr~felav~~~~~~s~~swl~~aWlg~D~naW~K~LsYQaaVysLLqaai 182 (860)
+-++.+|-.+-.-....+.-.-|.+.+.+.+..+ ..+.+|+++. -+..+.+||+.++
T Consensus 11 G~FD~lRk~~l~~~~~~~~~~~l~~~v~~~v~~~---------l~~~~~l~~~--------------nk~k~~alI~~~i 67 (106)
T PF05205_consen 11 GHFDKLRKECLADFDTSPAYQNLRQRVEEIVESE---------LERDPWLLSK--------------NKGKARALIEGAI 67 (106)
T ss_pred CChHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---------HhcCcccCCc--------------chHHHHHHHHHHH
Confidence 4467778776555544455556666666665544 2244455432 2356778999999
Q ss_pred hhhccCCCCCCcchHHHHHHhhhhhchhHHHHHhHhh
Q 002993 183 EISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLS 219 (860)
Q Consensus 183 eissrg~~rDRdvnvfVqrsL~~~~apLe~~Ir~~Ls 219 (860)
+=+.--.+.|+.|..+|...+..+...+|+.|++.|.
T Consensus 68 ~rs~~~~~~e~~i~~~vd~~l~~~~~~ie~~~~~~l~ 104 (106)
T PF05205_consen 68 DRSGVYKGVERIIDQVVDPKLNEIRPSIEEIIREELG 104 (106)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887777789999999999999888889999998875
No 9
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=30.88 E-value=4.6e+02 Score=29.06 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=58.6
Q ss_pred hhc--ccccCCCchhHHHHHhhhhhhHHHHHHHhhhhhccccccccccccccccccchhHHHHHHHHHHHHHHH----HH
Q 002993 506 KHS--KWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRL----EK 579 (860)
Q Consensus 506 kyS--~w~e~Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~Al~rl----E~ 579 (860)
||- +|.+.||..-++.+-.+ +.+..+-+.-+. ..+. ...+.++..+..+.-| +.
T Consensus 114 k~g~~~Wtr~~S~~~~~~l~~~----~~~~~~~L~~A~-------~sD~---------~v~~k~~~~~~~l~lL~~~~~~ 173 (353)
T cd09236 114 KFGTDRWTRPDSHEANPKLYTQ----AAEYEGYLKQAG-------ASDE---------LVRRKLDEWEDLIQILTGDERD 173 (353)
T ss_pred HcCCCCCCCCCcHHHHHHHHHH----HHHHHHHHHHHH-------hhHH---------HHHHHHHHHHHHHHHHcCCHHH
Confidence 786 79999999888776543 333444443322 1110 1223333333332222 11
Q ss_pred HHHHhhcccCc-----chHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002993 580 LLQALHVSSSN-----SGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAAS 626 (860)
Q Consensus 580 Llqel~~sss~-----sgke~lkaacsDLekIr~LkkeaEfleasfraka~~ 626 (860)
|-+.+. +++. +.+.++.....-|+++..||+|-+-++..+|.|+..
T Consensus 174 l~~~~P-s~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~~ 224 (353)
T cd09236 174 LENFVP-SSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTKARA 224 (353)
T ss_pred HHHhCC-CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111122 2222 346778888888889999999999999999988773
No 10
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=30.70 E-value=78 Score=32.86 Aligned_cols=98 Identities=30% Similarity=0.327 Sum_probs=52.5
Q ss_pred cccccCCCchhHHHHHhhhhhhHHHHHHHhhhhhccccccccccccccccccchhHHHHHHHHHHHHH-------HHHHH
Q 002993 508 SKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALI-------RLEKL 580 (860)
Q Consensus 508 S~w~e~Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~Al~-------rlE~L 580 (860)
.+|.+.||..-++.|- ..|..+.+-+.-+. .++. ...+.++..+..+. -|+..
T Consensus 68 ~~W~r~~S~~~~~~l~----~~l~~~~~~L~~A~-------~sD~---------~~~~~~~~~~~~l~~L~~~~~~L~~~ 127 (296)
T PF13949_consen 68 ERWTRPPSSELNASLR----KELQKYREYLEQAS-------ESDS---------QLRSKLESIEENLELLSGPIEELEAS 127 (296)
T ss_dssp TTCGSS-HHHHCHHHH----HHHHHHHHHHHHHH-------HHHH---------HHHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred CCCcCCCcHhhHHHHH----HHHHHHHHHHHHHH-------hhHH---------HHHHHHHHHHHHHHHHcCChhhHHhh
Confidence 4899999988777664 34444555544433 1110 11222333333332 23444
Q ss_pred HHHhhcccCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002993 581 LQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAA 625 (860)
Q Consensus 581 lqel~~sss~sgke~lkaacsDLekIr~LkkeaEfleasfraka~ 625 (860)
+-......+....+.++....=|+++..|++|-+-+..-+|.|+.
T Consensus 128 lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~~ 172 (296)
T PF13949_consen 128 LPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKLQ 172 (296)
T ss_dssp S--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444443344455777777778888888889999989998986443
No 11
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=24.51 E-value=4.6e+02 Score=23.85 Aligned_cols=60 Identities=30% Similarity=0.350 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-ccCcchHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHH
Q 002993 563 FDKALESVEEALIRLEKLLQALHV-SSSNSGKEQLKAACSDLE-KIRKLKKEAEFLEASVRA 622 (860)
Q Consensus 563 ~dkalesv~~Al~rlE~Llqel~~-sss~sgke~lkaacsDLe-kIr~LkkeaEfleasfra 622 (860)
|.-+-+-|...+.++|.+++...- .+..+..+.++.+..||. .|+.|+.+.+-|+.+.+.
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778899999999999887543 333335566677777775 467788889999998884
No 12
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.97 E-value=1.3e+02 Score=30.51 Aligned_cols=74 Identities=30% Similarity=0.314 Sum_probs=47.3
Q ss_pred HHhhhhhhHHH---------HHHHhhhhhccccc--ccccc-------ccccccccchhHHHHHHHHHHHHH---HHHHH
Q 002993 522 FLSKGYDKLMD---------CMKEMGIARNGMIE--SAESV-------TYSRTEIDSDSFDKALESVEEALI---RLEKL 580 (860)
Q Consensus 522 FLskg~~~L~e---------C~ee~~~~~~~~~~--~~~~~-------~~~~~~~e~~s~dkalesv~~Al~---rlE~L 580 (860)
=||.+++.|.+ |+.-+++++...++ |.-.+ .-+..-..+..||.+|+|.+.||. |.=.|
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 47888888865 99999999865543 11111 011222356789999999999986 44334
Q ss_pred HHHhhcccCcchHHHHHHhhhh
Q 002993 581 LQALHVSSSNSGKEQLKAACSD 602 (860)
Q Consensus 581 lqel~~sss~sgke~lkaacsD 602 (860)
.| ..||--|.|-+|-
T Consensus 92 ~q-------deGklWIaaVfsr 106 (144)
T PF12968_consen 92 HQ-------DEGKLWIAAVFSR 106 (144)
T ss_dssp TS-------THHHHHHHHHHHH
T ss_pred cc-------ccchhHHHHHHHH
Confidence 33 4889888888875
No 13
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=22.79 E-value=1.5e+02 Score=30.97 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=57.4
Q ss_pred chhHHHHHhhhhhhHHHHHHHhhhhhccccc-------------cccccc---cc-------------cccccchhHHHH
Q 002993 516 NVKAAKFLSKGYDKLMDCMKEMGIARNGMIE-------------SAESVT---YS-------------RTEIDSDSFDKA 566 (860)
Q Consensus 516 nvkaa~FLskg~~~L~eC~ee~~~~~~~~~~-------------~~~~~~---~~-------------~~~~e~~s~dka 566 (860)
.+=|+=|||+.--.|.|-+|.+|||+.++.+ ..+|+. +- ...+-....|+-
T Consensus 30 ~iYgilyls~~Pmtl~Ei~E~lg~Sks~vS~~lkkL~~~~lV~~~~~~G~Rk~~F~a~~df~~~f~t~f~ek~~ReId~t 109 (177)
T COG1510 30 QIYGILYLSRKPLTLDEIAEALGMSKSNVSMGLKKLQDWNLVKKVFEKGDRKDYFEAEKDFSQIFRTLFEEKWKREIDPT 109 (177)
T ss_pred HHhhhheecCCCccHHHHHHHHCCCcchHHHHHHHHHhcchHHhhhccCcchhhhcccchHHHHHHHHHHHHHHHHhhhH
Confidence 4668889999999999999999999977653 333431 00 111111122555
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCc-chHHHHHHhhhhHHHHHHH-HHHHHHHHH
Q 002993 567 LESVEEALIRLEKLLQALHVSSSN-SGKEQLKAACSDLEKIRKL-KKEAEFLEA 618 (860)
Q Consensus 567 lesv~~Al~rlE~Llqel~~sss~-sgke~lkaacsDLekIr~L-kkeaEflea 618 (860)
.+.+.+|+..++..++.=|+.+-- .=+.+|+.+..=.+.+++| .+..||+++
T Consensus 110 ~e~l~k~~~e~~~~~~~~~~~~~~ke~~~~l~~~l~~~~~~~~ll~~l~e~~~~ 163 (177)
T COG1510 110 KEALKKLLEELNEDLDDRDLTERIKEIKSKLERLLKWSEDYYELLTRLLEFLES 163 (177)
T ss_pred HHHHHHHHHHccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655555555554554422 1133444444444455443 445566554
No 14
>PRK00420 hypothetical protein; Validated
Probab=22.49 E-value=1.6e+02 Score=28.63 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=28.7
Q ss_pred HHHHHHHHH-HHHHHHHHhhcccCcch-HHHHHHhhhhHHHHHHHH
Q 002993 567 LESVEEALI-RLEKLLQALHVSSSNSG-KEQLKAACSDLEKIRKLK 610 (860)
Q Consensus 567 lesv~~Al~-rlE~Llqel~~sss~sg-ke~lkaacsDLekIr~Lk 610 (860)
++.|++.|. +++.|...|.=. ...+ -.+|-.+-.=|+|||+++
T Consensus 67 ~~~~~~il~~ki~~L~~kL~~e-~~~~ri~Ei~~~l~~l~ki~~~~ 111 (112)
T PRK00420 67 LKEVEEVLIEKINYLAKKLKED-EDIERITEIIRYLEVLERIRKIK 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHhCccc-cchhHHHHHHHHHHHHHHHHHHh
Confidence 556666665 899999888765 3333 345555666788888775
No 15
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.32 E-value=2.1e+02 Score=30.27 Aligned_cols=72 Identities=28% Similarity=0.450 Sum_probs=48.5
Q ss_pred cccccchhHHHHHHHHHHH-------------HH--HHHHHHH--Hhhccc----CcchHHHHHHhhhhHHHHHHHHHHH
Q 002993 555 RTEIDSDSFDKALESVEEA-------------LI--RLEKLLQ--ALHVSS----SNSGKEQLKAACSDLEKIRKLKKEA 613 (860)
Q Consensus 555 ~~~~e~~s~dkalesv~~A-------------l~--rlE~Llq--el~~ss----s~sgke~lkaacsDLekIr~Lkkea 613 (860)
+..+|++..|.-|+.++.+ |+ .+|.||. +-.+.. .+.+...|+....||+.| +..+
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~i---e~QV 176 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTI---EEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHH---HHHH
Confidence 3445677777777766654 43 2567763 222322 223356788888898887 6789
Q ss_pred HHHHHHHHHHHhhhhc
Q 002993 614 EFLEASVRAKAASLQQ 629 (860)
Q Consensus 614 Efleasfraka~~l~q 629 (860)
+.||.-++.|-..|++
T Consensus 177 ~~Le~~L~~k~~eL~~ 192 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQ 192 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888876
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=21.95 E-value=1.5e+02 Score=39.14 Aligned_cols=62 Identities=31% Similarity=0.423 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCccccccccccCCCcccccccccCCccccccccCcccccccCCCCCCCCCcchhh
Q 002993 613 AEFLEASVRAKAASLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGLFGFFTRPSIRKPKPQESEYC 692 (860)
Q Consensus 613 aEfleasfraka~~l~qg~~~~~~~~~~~~~~~y~~~k~~~~~~v~ld~~~~~~~~~~~~w~~f~r~~~~k~~~~~d~~~ 692 (860)
.|+.-|-+||+.+-|--|| | +-|+|.++..|++| .|+.+- +.|-.+.++ .-++|
T Consensus 1065 ~elitAILKapvDLLw~GG--------I---gTYVka~~etnA~v-gDrANd-----------~irv~g~e~---raKvI 1118 (1592)
T COG2902 1065 NELITAILKAPVDLLWNGG--------I---GTYVKASGETNADV-GDRAND-----------AIRVNGEEV---RAKVI 1118 (1592)
T ss_pred HHHHHHHHcCchhhhccCC--------C---ceeEecCCCccchh-hcccch-----------hhcccccee---ceeEE
Confidence 6889999999999999998 3 57999999999987 455442 344455444 34555
Q ss_pred cccCccccc
Q 002993 693 EQTGSNIGI 701 (860)
Q Consensus 693 ~~~~~~~~~ 701 (860)
|.+ +|+|+
T Consensus 1119 gEG-aNLgv 1126 (1592)
T COG2902 1119 GEG-ANLGV 1126 (1592)
T ss_pred eec-ccccc
Confidence 554 47776
Done!