Query 002993
Match_columns 860
No_of_seqs 115 out of 199
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 09:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3myf_A Sensor protein; HPT, hi 30.2 57 0.002 29.2 4.7 45 562-606 32-81 (119)
2 1m1j_C Fibrinogen gamma chain; 29.2 1.1E+02 0.0038 33.5 7.5 49 553-603 18-67 (409)
3 4dnd_A Syntaxin-10, SYN10; str 29.1 1.4E+02 0.0048 27.9 7.2 64 559-622 25-92 (130)
4 3iqt_A Signal transduction his 24.5 55 0.0019 29.7 3.6 45 562-606 41-90 (123)
5 3uul_A Utrophin; spectrin repe 22.4 2.5E+02 0.0084 23.5 7.0 58 559-628 3-60 (118)
6 3ol1_A Vimentin; structural ge 21.1 2.3E+02 0.0078 25.9 6.9 31 599-629 84-115 (119)
7 1zww_A SH3-containing GRB2-lik 18.2 3.1E+02 0.011 27.1 7.8 133 475-623 21-171 (256)
8 2c5k_T Syntaxin TLG1, T-snare 17.3 4E+02 0.014 23.7 7.4 55 561-621 6-60 (95)
9 2v4h_A NF-kappa-B essential mo 16.8 5.1E+02 0.018 24.2 8.2 63 555-625 21-83 (110)
10 2kk1_A Tyrosine-protein kinase 16.4 82 0.0028 30.3 2.9 83 493-607 41-123 (135)
No 1
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=30.21 E-value=57 Score=29.24 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHH-----HHHHHHHHhhcccCcchHHHHHHhhhhHHHH
Q 002993 562 SFDKALESVEEALI-----RLEKLLQALHVSSSNSGKEQLKAACSDLEKI 606 (860)
Q Consensus 562 s~dkalesv~~Al~-----rlE~Llqel~~sss~sgke~lkaacsDLekI 606 (860)
+..+.++.++.|+. .+..+.-.||=++++-|...|+++|..||..
T Consensus 32 ~~~~~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~ 81 (119)
T 3myf_A 32 SLPETVEKIQTALGQNDQATMLSTIHKLHGASCYCGVPTTQRLCQEIESA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45566666776665 5777888899999999999999999998875
No 2
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.21 E-value=1.1e+02 Score=33.51 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=25.4
Q ss_pred cccccccchhH-HHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHhhhhH
Q 002993 553 YSRTEIDSDSF-DKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDL 603 (860)
Q Consensus 553 ~~~~~~e~~s~-dkalesv~~Al~rlE~Llqel~~sss~sgke~lkaacsDL 603 (860)
+=+|+=++.-| .|.=..|+.-|..||++|+|+.=++ +..+.|..+|.|.
T Consensus 18 ~CPT~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~t--s~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 18 YCPTTCGIADFFNKYRLTTDGELLEIEGLLQQATNST--GSIEYLIQHIKTI 67 (409)
T ss_dssp EEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 33444444433 4444446666667777777654333 4444555555543
No 3
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=29.06 E-value=1.4e+02 Score=27.92 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhh-ccc--CcchHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHH
Q 002993 559 DSDSFDKALESVEEALIRLEKLLQALH-VSS--SNSGKEQLKAACSDLE-KIRKLKKEAEFLEASVRA 622 (860)
Q Consensus 559 e~~s~dkalesv~~Al~rlE~Llqel~-~ss--s~sgke~lkaacsDLe-kIr~LkkeaEfleasfra 622 (860)
..+-|..+-+-|.+++.+++.|.+... +.+ ++..++.++.++.+|+ .|+.|+.+.|-|+.+.+.
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999999998743 222 1122567777778875 468889999999999983
No 4
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=24.48 E-value=55 Score=29.70 Aligned_cols=45 Identities=31% Similarity=0.443 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHH-----HHHHHHHHhhcccCcchHHHHHHhhhhHHHH
Q 002993 562 SFDKALESVEEALI-----RLEKLLQALHVSSSNSGKEQLKAACSDLEKI 606 (860)
Q Consensus 562 s~dkalesv~~Al~-----rlE~Llqel~~sss~sgke~lkaacsDLekI 606 (860)
+..+.++.++.|+. .|..+.-.||=++++.|...|+++|..||..
T Consensus 41 ~~~~~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~ 90 (123)
T 3iqt_A 41 FLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQ 90 (123)
T ss_dssp HHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45556666666664 5777788899999999999999999998865
No 5
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=22.42 E-value=2.5e+02 Score=23.46 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=37.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002993 559 DSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAASLQ 628 (860)
Q Consensus 559 e~~s~dkalesv~~Al~rlE~Llqel~~sss~sgke~lkaacsDLekIr~LkkeaEfleasfraka~~l~ 628 (860)
++..|..+++.+..=|..-|..|.... .-| .|++.|+.+-++-+.|++-+.++-..++
T Consensus 3 ~L~~f~~~l~el~~WL~e~e~~l~~~~----~~~--------~d~~~v~~~l~~h~~l~~ei~~~~~~v~ 60 (118)
T 3uul_A 3 DLDSYQIALEEVLTWLLSAEDTFQEQD----DIS--------DDVEDVKEQFATHETFMMELSAHQSSVG 60 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSC----CCC--------SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCC----CCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899988888777777776665322 223 5666666666666666666665554443
No 6
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.14 E-value=2.3e+02 Score=25.86 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=25.8
Q ss_pred hhhhHH-HHHHHHHHHHHHHHHHHHHHhhhhc
Q 002993 599 ACSDLE-KIRKLKKEAEFLEASVRAKAASLQQ 629 (860)
Q Consensus 599 acsDLe-kIr~LkkeaEfleasfraka~~l~q 629 (860)
+..||| +|-.|+.|..||..-+......||.
T Consensus 84 ~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 84 ARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777 6899999999999999888877775
No 7
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=18.20 E-value=3.1e+02 Score=27.13 Aligned_cols=133 Identities=20% Similarity=0.194 Sum_probs=79.0
Q ss_pred cCCCCCCCCCCCcccchhhhhhhhhhhhhhhhhcccccCCC-chhHHHH----Hhh--h--------h--hhHHHHHHHh
Q 002993 475 HGHKSKREDPPNAEAIPQVLDVCSHWMQSFIKHSKWLENPS-NVKAAKF----LSK--G--------Y--DKLMDCMKEM 537 (860)
Q Consensus 475 ~~h~~~~~~~~~~e~i~~vl~VCs~W~~sFikyS~w~e~Ps-nvkaa~F----Lsk--g--------~--~~L~eC~ee~ 537 (860)
.|+-++.+-++....+-+=+++=-.|+...++-++...||. |+++-.+ ++| | + ..|-.||.++
T Consensus 21 ~G~~E~Tel~~d~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~k~~g~~k~~~~p~~~~~L~~~m~~~ 100 (256)
T 1zww_A 21 VGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKF 100 (256)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC---------------------CCHHHHHHHHHHHH
T ss_pred hccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHH
Confidence 34444444455566666656666677777777776655552 2222111 222 1 1 2578888888
Q ss_pred hhhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHHH-hhhhHHHHHHHHHHHHHH
Q 002993 538 GIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKA-ACSDLEKIRKLKKEAEFL 616 (860)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~Al~rlE~Llqel~~sss~sgke~lka-acsDLekIr~LkkeaEfl 616 (860)
|-.. +++ +.|-++|+.+.+|..+|.....+++..-.+.=-+-|+. ...|+..|++.+|..|-.
T Consensus 101 ~~~l-------~~~---------s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~ 164 (256)
T 1zww_A 101 GREL-------GDD---------CNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGR 164 (256)
T ss_dssp HHHH-------CSS---------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HhhC-------CCC---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7644 111 24667888888888888888887776654444566776 467999999999998865
Q ss_pred HHHHHHH
Q 002993 617 EASVRAK 623 (860)
Q Consensus 617 easfrak 623 (860)
.--|-++
T Consensus 165 rLdyD~~ 171 (256)
T 1zww_A 165 RLDFGYK 171 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 8
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=17.27 E-value=4e+02 Score=23.69 Aligned_cols=55 Identities=18% Similarity=0.360 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002993 561 DSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVR 621 (860)
Q Consensus 561 ~s~dkalesv~~Al~rlE~Llqel~~sss~sgke~lkaacsDLekIr~LkkeaEfleasfr 621 (860)
+-|....+-+.+.+.+|+.++.+....++..-...|+..|.||+-. .+=|+.|..
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~------l~DL~~SI~ 60 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEET------IVDLDRSII 60 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 4589999999999999999998854433445566777777776533 455555555
No 9
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=16.81 E-value=5.1e+02 Score=24.24 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=48.7
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002993 555 RTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAA 625 (860)
Q Consensus 555 ~~~~e~~s~dkalesv~~Al~rlE~Llqel~~sss~sgke~lkaacsDLekIr~LkkeaEfleasfraka~ 625 (860)
....++++...-|.+-|+||..-.....+| |+.+..--.|+|.|-=||..++.+++-|.|.-+
T Consensus 21 ~~~~ei~~L~~~L~~AEeaL~~Kq~~idel--------k~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERa 83 (110)
T 2v4h_A 21 MASMQLEDLRQQLQQAEEALVAKQELIDKL--------KEEAEQHKIVMETVPVLKAQADIYKADFQAERH 83 (110)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 444567888888888899988755555554 556666778999999999999999999976543
No 10
>2kk1_A Tyrosine-protein kinase ABL2; methods development, tyrosin protein kinase ABL2, F-actin binding domain, NESG, alternative splicing, ATP-binding; NMR {Homo sapiens}
Probab=16.39 E-value=82 Score=30.32 Aligned_cols=83 Identities=25% Similarity=0.343 Sum_probs=50.1
Q ss_pred hhhhhhhhhhhhhhhcccccCCCchhHHHHHhhhhhhHHHHHHHhhhhhccccccccccccccccccchhHHHHHHHHHH
Q 002993 493 VLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEE 572 (860)
Q Consensus 493 vl~VCs~W~~sFikyS~w~e~Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~ 572 (860)
.+=-|+.-+.+=+ .+-|++... +-+||..+.-|----+-.. .+. .-| -..|
T Consensus 41 ~vLe~~elL~~Al-----~~~~s~S~v---~d~~h~L~~~C~~yvD~i~-------q~r---------nKF-----aFRE 91 (135)
T 2kk1_A 41 ALLECADLLSSAL-----TEPVPNSQL---VDTGHQLLDYCSGYVDCIP-------QTR---------NKF-----AFRE 91 (135)
T ss_dssp HHHHHHHHHHHHT-----TSCCCHHHH---HHHHHHHHHHHHHHGGGCS-------CHH---------HHH-----HHHH
T ss_pred HHHHHHHHHHHHh-----ccCCcchhH---HHhhhhHHhhcccchhccc-------chh---------hHH-----HHHH
Confidence 4445666555433 334444333 6678887777865433200 010 012 2468
Q ss_pred HHHHHHHHHHHhhcccCcchHHHHHHhhhhHHHHH
Q 002993 573 ALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIR 607 (860)
Q Consensus 573 Al~rlE~Llqel~~sss~sgke~lkaacsDLekIr 607 (860)
|+.|||..+|||-++|...| -.++-.|+.++=
T Consensus 92 avsrLe~slqeL~~~sa~ag---~p~~~~~~n~LL 123 (135)
T 2kk1_A 92 AVSKLELSLQELQVSSAAAG---VPGTNPVLNNLL 123 (135)
T ss_dssp HHHHHHHHHHHHHHSCSSSS---CTTCCTHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCC---CCCCCHHHHHHH
Confidence 89999999999999987765 245677877664
Done!