Query 002993
Match_columns 860
No_of_seqs 115 out of 199
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 09:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002993.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002993hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lvfa_ a.47.2.1 (A:) Syntaxin 55.0 25 0.0018 29.4 8.5 61 562-622 3-67 (106)
2 d1vi0a2 a.121.1.1 (A:78-194) H 23.6 72 0.0053 24.7 6.0 42 393-434 73-114 (117)
3 d2elba1 a.238.1.1 (A:6-273) DC 13.9 3.9E+02 0.029 23.5 9.8 105 496-617 27-132 (268)
4 d2tpta1 a.46.2.1 (A:1-70) Thym 13.0 84 0.0061 23.9 3.8 26 796-821 6-31 (70)
5 d1vcsa1 a.47.2.1 (A:8-96) Vesi 11.6 1.2E+02 0.0085 24.7 4.5 44 563-606 36-79 (89)
6 d1khda1 a.46.2.1 (A:12-80) Ant 11.4 95 0.0069 23.4 3.6 26 796-821 4-29 (69)
7 d1brwa1 a.46.2.1 (A:1-70) Pyri 11.2 1E+02 0.0075 23.2 3.8 26 796-821 5-30 (70)
8 d1x4pa1 a.217.1.1 (A:8-60) Arg 10.6 59 0.0043 25.0 2.0 22 798-819 7-28 (53)
9 d2elca1 a.46.2.1 (A:1-52) Anth 10.0 1.2E+02 0.0086 22.2 3.6 24 797-820 3-26 (52)
10 d2od5a1 a.4.5.70 (A:6-96) Hypo 9.9 52 0.0038 27.8 1.6 44 210-254 10-58 (91)
No 1
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=55.02 E-value=25 Score=29.38 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhcccC--cchHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHH
Q 002993 562 SFDKALESVEEALIRLEKLLQA-LHVSSS--NSGKEQLKAACSDLEK-IRKLKKEAEFLEASVRA 622 (860)
Q Consensus 562 s~dkalesv~~Al~rlE~Llqe-l~~sss--~sgke~lkaacsDLek-Ir~LkkeaEfleasfra 622 (860)
-|.-+-+-|..++.+++.|.+. +++.+. ..+++.+..+++||.. |+.++.+.|-||.+.++
T Consensus 3 PF~~v~~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ 67 (106)
T d1lvfa_ 3 PFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISI 67 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4777888899999999988766 344332 2346778888899764 78899999999999984
No 2
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=23.57 E-value=72 Score=24.68 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=32.3
Q ss_pred hhhHHHHHHHhccchhhhhhcCCCCCcchhHHHHHHHHHcce
Q 002993 393 DLAIFGFFIALGRSTQSFLSRNGFDVVDDPIKSLIRYLIGGS 434 (860)
Q Consensus 393 DLAifGfFiaLGRsTr~fLs~~g~~~ldd~ie~~lrYL~gGs 434 (860)
+++...||.++.--...++...+-.++|+.++.+++.+..|.
T Consensus 73 ~~~a~~i~g~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Gl 114 (117)
T d1vi0a2 73 RLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELLVSGI 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCSCGGGGHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Confidence 367777777776554455556677789999999999999884
No 3
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.87 E-value=3.9e+02 Score=23.47 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=54.8
Q ss_pred hhhhhhhhhhhhcccccCCCchhHHHHHhhhhhhHHHHHHHhhhhhccccccccccccccccccchhHHHHHHHHHHHHH
Q 002993 496 VCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALI 575 (860)
Q Consensus 496 VCs~W~~sFikyS~w~e~Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~Al~ 575 (860)
.=..|++.++|..+=+ +.|.+-+..++..+.+++.+++.... ....+-..+..+|...-.++.
T Consensus 27 ~l~~~l~kl~k~~~~~-----~~~~~~~~~~~~~f~~~L~~~~~~~~------------~~~~dd~~~~~~l~~f~~~~~ 89 (268)
T d2elba1 27 AISNYMNQLYQAMHRI-----YDAQNELSAATHLTSKLLKEYEKQRF------------PLGGDDEVMSSTLQQFSKVID 89 (268)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTGGGSCC------------C-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhcc------------cccCCcHHHHHHHHHHHHHHH
Confidence 3345666666655433 34566666667777777766654220 001111224556666666666
Q ss_pred HHHHHHHHhhcccCcchHHHHHHhh-hhHHHHHHHHHHHHHHH
Q 002993 576 RLEKLLQALHVSSSNSGKEQLKAAC-SDLEKIRKLKKEAEFLE 617 (860)
Q Consensus 576 rlE~Llqel~~sss~sgke~lkaac-sDLekIr~LkkeaEfle 617 (860)
++....+.|--.....-.+.|..-. .|+..++.+||.-|-.-
T Consensus 90 el~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~kk~fek~~ 132 (268)
T d2elba1 90 ELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIAS 132 (268)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6655544443332222334454444 57777777777766443
No 4
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=12.99 E-value=84 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhh
Q 002993 796 ELLRRALVGDELTQKEKQALQRTLTD 821 (860)
Q Consensus 796 rLL~R~l~G~~LTrRErkqL~RT~~D 821 (860)
.++.|...|..||+.|-+++.+.+.|
T Consensus 6 eiI~k~~~g~~Ls~~E~~~~~~~i~~ 31 (70)
T d2tpta1 6 EIIRKKRDGHALSDEEIRFFINGIRD 31 (70)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHc
Confidence 58889999999999999998876543
No 5
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.64 E-value=1.2e+02 Score=24.65 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHhhhhHHHH
Q 002993 563 FDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKI 606 (860)
Q Consensus 563 ~dkalesv~~Al~rlE~Llqel~~sss~sgke~lkaacsDLekI 606 (860)
+++.++-.++-|.++|.-++.+.-+.-+.-.-.|+...+||+++
T Consensus 36 ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~l 79 (89)
T d1vcsa1 36 VEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKL 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443222222244455555555544
No 6
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=11.36 E-value=95 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhh
Q 002993 796 ELLRRALVGDELTQKEKQALQRTLTD 821 (860)
Q Consensus 796 rLL~R~l~G~~LTrRErkqL~RT~~D 821 (860)
.++.|...|..||+.|-+.+.+.+.|
T Consensus 4 ~il~kl~~g~~Ls~ee~~~~~~~i~~ 29 (69)
T d1khda1 4 PILEKLFKSQSMTQEESHQLFAAIVR 29 (69)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 36788999999999999988876654
No 7
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.24 E-value=1e+02 Score=23.24 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhh
Q 002993 796 ELLRRALVGDELTQKEKQALQRTLTD 821 (860)
Q Consensus 796 rLL~R~l~G~~LTrRErkqL~RT~~D 821 (860)
.++.|...|..||+.|-+++.+-+.|
T Consensus 5 eii~k~~~g~~Ls~~E~~~~~~~i~~ 30 (70)
T d1brwa1 5 DLIAKKRDGKALTKEEIEWIVRGYTN 30 (70)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 57889999999999999998877643
No 8
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=59 Score=25.03 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=16.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHh
Q 002993 798 LRRALVGDELTQKEKQALQRTL 819 (860)
Q Consensus 798 L~R~l~G~~LTrRErkqL~RT~ 819 (860)
|.+.+.+.+||++||..++..-
T Consensus 7 lV~~ii~G~LspkeR~~~k~~P 28 (53)
T d1x4pa1 7 LVKRVIEGSLSPKERTLLKEDP 28 (53)
T ss_dssp HHHHHHHTCSCHHHHHHHHHSG
T ss_pred HHHHHHcCCCCHHHHHHhhcCC
Confidence 4455667799999999998653
No 9
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=10.04 E-value=1.2e+02 Score=22.20 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.4
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhh
Q 002993 797 LLRRALVGDELTQKEKQALQRTLT 820 (860)
Q Consensus 797 LL~R~l~G~~LTrRErkqL~RT~~ 820 (860)
++.|.+.|..||+.|-+.+.+.+-
T Consensus 3 ~l~kl~~g~~Lt~~ea~~~~~~im 26 (52)
T d2elca1 3 AVKKAILGEVLEEEEAYEVMRALM 26 (52)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Confidence 578999999999999998877653
No 10
>d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples}
Probab=9.94 E-value=52 Score=27.78 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=31.2
Q ss_pred hHHHHHhHhhccCCc----cchhhhcc-cchhhhhHhhhccccccccccc
Q 002993 210 LESLIRDKLSAKLPE----GYEWFWSE-QVPAVVTSFINYFERDQRFTAA 254 (860)
Q Consensus 210 Le~~Ir~~Ls~r~P~----a~eWfws~-Q~P~vv~sFVn~le~d~rf~~a 254 (860)
|-+.|++-|+.+ |. ..+|+-.. ..-.....--|+|++||||.-.
T Consensus 10 lR~~I~k~L~~~-p~NT~eI~dhlN~r~r~gaTmnQlgNILakD~rf~ki 58 (91)
T d2od5a1 10 IREKIKKFLGDR-PRNTAEILEHINSTMRHGTTSQQLGNVLSKDKDIVKV 58 (91)
T ss_dssp HHHHHHHHTSSS-CEEHHHHHHHHHTSSSSCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHhcccCCCHHHHHHHHhcCcchhee
Confidence 556788888887 74 56787665 2333445567999999999863
Done!