BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002994
(860 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 260/418 (62%), Gaps = 38/418 (9%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYF 56
M QFK +FLG R RA TSQRC+R ND+ENVG T+RHHTFFEMLGNFSFGDYF
Sbjct: 43 MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 102
Query: 57 KKEAIQWAWEFSTVE--FGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMG----- 109
K +AI +AW T E F LP RLW++VYE DDEA+EIW KEVG+P E I R+G
Sbjct: 103 KLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 162
Query: 110 --ADDNFWNSGATGPCGPCSEIYYDFHPDR---GCSDVDLGDDTRFIEFYNLVFMQYNKK 164
A DNFW G TGPCGPC+EI+YD H D G D R+IE +N+VFMQ+N++
Sbjct: 163 PYASDNFWQMGDTGPCGPCTEIFYD-HGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQ 221
Query: 165 DDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRT 224
DG++EPL + ++DTG+GLERIA +LQ V +NY+ DL +I+ +++ + D +
Sbjct: 222 ADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-----DLS 276
Query: 225 NLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGA 284
N +L++I DH+R+ +L++DGV PSN RGYV+RR+IRRAVR G +LG K
Sbjct: 277 NKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAK--------ET 328
Query: 285 FLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRT 344
F + I++ D+K F +TLERG LLD+ LA
Sbjct: 329 FFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELA------ 382
Query: 345 RESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAA 402
+ SG L G+ AF LYDT+GFPV++T +V E + VD GF+ ME QRR+++ A
Sbjct: 383 KLSGDT--LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/404 (45%), Positives = 261/404 (64%), Gaps = 25/404 (6%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYF 56
M+ FK +FLG R RA + Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYF
Sbjct: 44 MVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYF 103
Query: 57 KKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWN 116
KKEAI++AWEF T LP +L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW
Sbjct: 104 KKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQ 163
Query: 117 SGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 176
G GPCGP SEIY DRG + D R++E +NLVFMQYN+ ++G L PL N
Sbjct: 164 MGDVGPCGPSSEIYV----DRG---EEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPN 216
Query: 177 IDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLR 236
IDTG+GLERIA +LQ +N+E D+IFP+I+ E++ Y + + T++ L++I DHLR
Sbjct: 217 IDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFE-TDVALRVIADHLR 275
Query: 237 AIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIEL 296
AI + +SDGV PSN GRGYV+RR++RRA+R G LGI E FL + +++
Sbjct: 276 AITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGI--------ENPFLYKGVDLVVDI 327
Query: 297 STHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQ 356
+++ F++TL+ G + + +++ AL R++ LSG+
Sbjct: 328 MKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKT-----LSGK 382
Query: 357 DAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQ 400
+ F YDT+GFPV++ E+A E G+ +D++GF E+E QR +++
Sbjct: 383 EVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/404 (45%), Positives = 261/404 (64%), Gaps = 25/404 (6%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYF 56
M+ FK +FLG R RA + Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYF
Sbjct: 43 MVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYF 102
Query: 57 KKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWN 116
KKEAI++AWEF T LP +L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW
Sbjct: 103 KKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQ 162
Query: 117 SGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 176
G GPCGP SEIY DRG + D R++E +NLVFMQYN+ ++G L PL N
Sbjct: 163 MGDVGPCGPSSEIYV----DRG---EEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPN 215
Query: 177 IDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLR 236
IDTG+GLERIA +LQ +N+E D+IFP+I+ E++ Y + + T++ L++I DHLR
Sbjct: 216 IDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFE-TDVALRVIADHLR 274
Query: 237 AIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIEL 296
AI + +SDGV PSN GRGYV+RR++RRA+R G LGI E FL + +++
Sbjct: 275 AITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGI--------ENPFLYKGVDLVVDI 326
Query: 297 STHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQ 356
+++ F++TL+ G + + +++ AL R++ LSG+
Sbjct: 327 MKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKT-----LSGK 381
Query: 357 DAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQ 400
+ F YDT+GFPV++ E+A E G+ +D++GF E+E QR +++
Sbjct: 382 EVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 425
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/418 (46%), Positives = 259/418 (61%), Gaps = 38/418 (9%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYF 56
M QFK +FLG R RA TSQRC+R ND+ENVG T+RHHTFFEMLGNFSFGDYF
Sbjct: 43 MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 102
Query: 57 KKEAIQWAWEFSTVE--FGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMG----- 109
K +AI +AW T E F LP RLW++VYE DDEA+EIW KEVG+P E I R+G
Sbjct: 103 KLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 162
Query: 110 --ADDNFWNSGATGPCGPCSEIYYDFHPDR---GCSDVDLGDDTRFIEFYNLVFMQYNKK 164
A DNFW G TGPCGPC+EI+YD H D G D R+IE +N+VFMQ+N++
Sbjct: 163 PYASDNFWQMGDTGPCGPCTEIFYD-HGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQ 221
Query: 165 DDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRT 224
DG++EPL + ++DT +GLERIA +LQ V +NY+ DL +I+ +++ + D +
Sbjct: 222 ADGTMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-----DLS 276
Query: 225 NLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGA 284
N +L++I DH+R+ +L++DGV PSN RGYV+RR+IRRAVR G +LG K
Sbjct: 277 NKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAK--------ET 328
Query: 285 FLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRT 344
F + I++ D+K F +TLERG LLD+ LA
Sbjct: 329 FFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELA------ 382
Query: 345 RESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAA 402
+ SG L G+ AF LYDT+GFPV++T +V E + VD GF+ ME QRR+++ A
Sbjct: 383 KLSGDT--LDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 342 bits (877), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 180/401 (44%), Positives = 255/401 (63%), Gaps = 25/401 (6%)
Query: 4 FKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKE 59
FK +FLG R RA + Q+C+R ND+E VG TSRHHTFFE LGNFSFGDYFKKE
Sbjct: 47 FKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKE 106
Query: 60 AIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGA 119
AI++AWEF T LP +L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G
Sbjct: 107 AIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQXGD 166
Query: 120 TGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDT 179
GPCGP SEIY DRG + D R++E +NLVF QYN+ ++G L PL NIDT
Sbjct: 167 VGPCGPSSEIYV----DRG---EEYEGDERYLEIWNLVFXQYNRDENGVLTPLPHPNIDT 219
Query: 180 GLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIV 239
G GLERIA +LQ +N+E D+IFP+I+ E++ Y + + T++ L++I DHLRAI
Sbjct: 220 GXGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFE-TDVALRVIADHLRAIT 278
Query: 240 YLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTH 299
+ +SDGV PSN GRGYV+RR++RRA R G LGI E FL + +++
Sbjct: 279 FAISDGVIPSNEGRGYVIRRILRRAXRFGYKLGI--------ENPFLYKGVDLVVDIXKE 330
Query: 300 IDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAF 359
+++ F++TL+ G + + +++ AL R++ LSG++ F
Sbjct: 331 PYPELELSREFVKGIVKGEEKRFIKTLKAGXEYIQEVIQKALEEGRKT-----LSGKEVF 385
Query: 360 LLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQ 400
YDT+GFPV++ E+A E G+ +D++GF E+E QR +++
Sbjct: 386 TAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 192/711 (27%), Positives = 303/711 (42%), Gaps = 138/711 (19%)
Query: 22 SQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWI 81
SQ IR D++NVG T RH T FEM+ + +F + + I W E TVE
Sbjct: 123 SQPSIRFTDIDNVGITGRHFTIFEMMAHHAFN--YPGKPIYWMDE--TVEL--------- 169
Query: 82 SVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSD 141
AFE + KE+ + E I +N W G G GP E+ Y
Sbjct: 170 --------AFEFFTKELKMKPEDIT---FKENPWAGG--GNAGPAFEVLY---------- 206
Query: 142 VDLGDDTRFIEFYNLVFMQYNKKDDGSLE------------PLKQKNIDTGLGLERIARI 189
R +E LVFMQY K + + + P++ K +DTG GLER+ +
Sbjct: 207 -------RGLEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPMETKVVDTGYGLERLVWM 259
Query: 190 LQKVPNNYETDLIF---PIIKKA----------------------SELANVSYAQSNDRT 224
Q P Y+ L + P+ K A +L ++ Y +
Sbjct: 260 SQGTPTAYDAVLGYVVEPLKKMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAK 319
Query: 225 NLNLKI---------------IGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGR 269
+ + + I DH +A+ ++L+DGV PSN+ GY+ R LIR+++R R
Sbjct: 320 RVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVKAGYLARLLIRKSIRHLR 379
Query: 270 LLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFVQTLERG 329
LG LE +A EL + K + +TL RG
Sbjct: 380 ELG--------LEVPLSEIVALHIKELHKTF-PEFKEMEDIILEMIELEEKKYAETLRRG 430
Query: 330 EKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFD 389
L+ + +A + ++ G + + + Y++ G EI KE+AE+ GV V++
Sbjct: 431 SDLVRREIA----KLKKKG-IKEIPVEKLVTFYESHGLTPEIVKEIAEKEGVKVNIPDNF 485
Query: 390 IEM---ENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKP 446
M E +R + + V +L + +PDT L Y+ K + K
Sbjct: 486 YSMVAKEAERTKEEKGEELVDF------ELLKDLPDTRRLYYEDPFMKEF------DAK- 532
Query: 447 VIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFV 506
V++V K V+L+ T FY E GGQ D G L V V+V +V+K +G V +
Sbjct: 533 VLRVIKDW---VILDATAFYPEGGGQPYDTGVLIVNGRE------VKVTNVQK-VGKVII 582
Query: 507 HKGTIXXXXXXXXXXXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFD 566
HK +D K R + HHT TH+L AL +V+G+ QAGS + D
Sbjct: 583 HK-VEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTD 641
Query: 567 RLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYG 624
R D + ++ + + EL+EIE L N + + + + + A++ ++ G G
Sbjct: 642 WARLDISHYKRISEEELKEIEMLANRIVMEDRKVTWEWLPRTTAEQKYGFRLYQGGVVPG 701
Query: 625 EQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGE 675
++RVV++ ++ CGGTH+ +T + KI+ + I G+ RI GE
Sbjct: 702 REIRVVKIEDWDVQACGGTHLPSTGLVGPIKILRTERIQDGVERIIFACGE 752
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 205/736 (27%), Positives = 294/736 (39%), Gaps = 163/736 (22%)
Query: 4 FKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQ 62
F+P G P SQ CIR +D+++VGRT RH T FE + +F +Y KE
Sbjct: 104 FQPFVTSGVAPPPANPLTISQPCIRLDDLDSVGRTGRHLTLFEXXAHHAF-NYPGKEIY- 161
Query: 63 WAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGP 122
W+ TV + E+ N E+GV E I + W G G
Sbjct: 162 --WKNETVAY-----------------CTELLN-ELGVKKEDIV---YKEEPWAGG--GN 196
Query: 123 CGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLE-----PLKQKN- 176
GPC E +G +E LVF + +G +E K N
Sbjct: 197 AGPCLEAI-------------VGG----LEVATLVFXNLEEHPEGDIEIKGARYRKXDNY 239
Query: 177 -IDTGLGLERIARILQKVPNNYETDLIFP-----------------------IIKKASEL 212
+DTG GLER + P Y D IFP I+ ++S+L
Sbjct: 240 IVDTGYGLERFVWASKGTPTVY--DAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKL 297
Query: 213 ANVSYAQSNDRTNLNLKIIGD------------------------HLRAIVYLLSDGVFP 248
A + +R N K + D H R I++ L DG+ P
Sbjct: 298 AGIXGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVP 357
Query: 249 SNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXX 308
SN G GY+ R IRR++R L + D +E E + LST
Sbjct: 358 SNAGAGYLARLXIRRSLRLAEELELGLDLYDLVEXHKKILGFEFDVPLST---------- 407
Query: 309 XXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFP 368
+ T+ +G +L+++++ R + +L D LYD+ G P
Sbjct: 408 --VQEILELEKERYRTTVSKGTRLVERLV----ERKK------KLEKDDLIELYDSHGIP 455
Query: 369 VEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGY 428
VE+ +A E G V+ DI E +R S+A K L + P TE L Y
Sbjct: 456 VELAVGIAAEKGAEVEXPK-DIYAELAKRHSKAEKVQEK-----KITLQNEYPATEKLYY 509
Query: 429 DTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQ 488
D +LL VI V V+LNR+ FY ESGGQ D G+L G
Sbjct: 510 DD-------PTLLEFEAEVIGVEGDF---VILNRSAFYPESGGQDNDVGYLIANGGK--- 556
Query: 489 TAVVEVKDVKKSLGSVFVHKGTIXXXXXXXXXXXXAIVDPKLRQRAKVHHTATHLLQAAL 548
EV DV ++ G V +H + ++D +R R HH+ATH+L +L
Sbjct: 557 ---FEVVDVLEADG-VVLH--VVKGAKPEVGTKVKGVIDSDVRWRHXRHHSATHVLLYSL 610
Query: 549 KKVIGQETSQAGSLVAFDRLRFDF-NFHRPLLDTELEEIERLINGWIGDANLLQTKVMAL 607
+KV+G QAG+ F + R D +F RP + E + + +L K +
Sbjct: 611 QKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEX------LANREILANKPIKW 664
Query: 608 DDAKRAGAIAMFGEKY-------GEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQ 660
+ R A FG + G ++RVV+V G ++ CGGTH +T EI KI+ +
Sbjct: 665 EWXDRIEAERKFGFRLYQGGVPPGRKIRVVQV-GDDVQACGGTHCRSTGEIGXLKILKVE 723
Query: 661 GIASGIRRIEAVAGEA 676
I G+ R E AGEA
Sbjct: 724 SIQDGVIRFEFAAGEA 739
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 182/714 (25%), Positives = 288/714 (40%), Gaps = 144/714 (20%)
Query: 22 SQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWI 81
SQ IR D++NVG T RH T FEM+ + +F + I W E TVE
Sbjct: 123 SQPSIRFTDIDNVGITGRHFTIFEMMAHHAFN--YPGXPIYWMDE--TVEL--------- 169
Query: 82 SVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSD 141
AFE + KE+ + E I +N W G G GP E+ Y
Sbjct: 170 --------AFEFFTKELXMXPEDIT---FKENPWAGG--GNAGPAFEVLY---------- 206
Query: 142 VDLGDDTRFIEFYNLVFMQYNKKDDGSLE------------PLKQKNIDTGLGLERIARI 189
R +E LVFMQY + + + P++ +DTG GLER+ +
Sbjct: 207 -------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGLERLVWM 259
Query: 190 LQKVPNNYETDLIFPI--------IKKASE-----------------LANVSYAQSNDRT 224
Q P Y+ L + + I+K E L ++ Y +
Sbjct: 260 SQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAK 319
Query: 225 NLNLKI---------------IGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGR 269
+ + + I DH +A+ ++L+DGV PSN+ GY+ R LIR+++R R
Sbjct: 320 RVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLR 379
Query: 270 LLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFVQTLERG 329
LG LE +A EL + + +TL RG
Sbjct: 380 ELG--------LEVPLSEIVALHIXELHKTF-PEFXEMEDIILEMIELEEKXYAETLRRG 430
Query: 330 EKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFD 389
L+ + +A + ++ G + + + Y++ G EI E+AE+ GV V++
Sbjct: 431 SDLVRREIA----KLKKKG-IKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNF 485
Query: 390 IEM---ENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYD---TLSAKAIVESLLVN 443
M E +R + + V +L + +PDT L Y+ A V ++ +
Sbjct: 486 YSMVAKEAERTKEEKGEELVDF------ELLKDLPDTRRLYYEDPFMXEFDAXVLRVIXD 539
Query: 444 GKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGS 503
V+L+ T FY E GGQ D G L V ++ V V+ V G
Sbjct: 540 W-------------VILDATAFYPEGGGQPYDTGVLIVN---GREVXVTNVQXV----GX 579
Query: 504 VFVHKGTIXXXXXXXXXXXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLV 563
V +H +D R + HHT TH+L AL +V+G+ QAGS +
Sbjct: 580 VIIHX-VEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQL 638
Query: 564 AFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GE 621
D R D + + + + EL EIE L N + + + + + A++ ++ G
Sbjct: 639 TTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGV 698
Query: 622 KYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGE 675
G ++RVV + ++ GGTH+ +T + I+ + I G+ RI GE
Sbjct: 699 VPGREIRVVXIEDWDVQAXGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 536 VHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIG 595
+ H+ HL+ A+K++ G G ++ +DF+ + + + E+IE+ + +
Sbjct: 73 LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131
Query: 596 DANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVP----------GVSMELCGGTHV 645
+ ++ KV++ D+AK +F + + +P G +LC G HV
Sbjct: 132 ENMKIERKVVSRDEAKE-----LFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHV 186
Query: 646 NNTAEIRAFKIISEQGIA----SGIRRIEAVAGEAFIE 679
+TA+I+ FK++S G S + ++ + G AF +
Sbjct: 187 PSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFD 224
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
Pyrococcus Horikoshii
Length = 216
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 36/219 (16%)
Query: 455 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEV-KDVKKSLGSVFVHKGTIXX 513
D +LL++T FY GGQ D +GT V++V KD + ++ V
Sbjct: 27 DNAILLDQTIFYPTGGGQPHD-------RGTINGVEVLDVYKDEEGNVWHVVKEPEKFKV 79
Query: 514 XXXXXXXXXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQ-AGSLVAFDRLRFDF 572
+D R + HT HLL+ L +V+G+ Q GS ++ ++ R+D
Sbjct: 80 GDEVELK-----IDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDI 134
Query: 573 NFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEV 632
+ L + E+I L N ++ + ++ I G++ Q+R EV
Sbjct: 135 AYPENL-NKYKEQIISLFNKYVDEGGEVK--------------IWWEGDRRYTQIRDFEV 179
Query: 633 -PGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIE 670
P CGGTHV + EI K + I G +R+E
Sbjct: 180 IP------CGGTHVKDIKEIGHIKKLKRSSIGRGKQRLE 212
>pdb|1V4P|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|C Chain C, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1WXO|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|C Chain C, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
Length = 157
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 538 HTATHLLQAALKKVIGQETSQA-GSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 596
H+A H+++ A+ KV+G E + V ++ F R D E+ EIERL N + +
Sbjct: 9 HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKE 68
Query: 597 ANLLQTKVMALDDAKRAGAIAMFGEKY------GEQVRVVEVPGV---SMELCGGTHVNN 647
++ + ++A++ MFGE E VR+++V + ++ C H
Sbjct: 69 NAPIKIYELPREEAEK-----MFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKT 123
Query: 648 TAEIRAFKI 656
T EI KI
Sbjct: 124 TGEIGPIKI 132
>pdb|1V7O|A Chain A, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1V7O|B Chain B, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1WNU|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
pdb|1WNU|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
Length = 165
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 538 HTATHLLQAALKKVIGQETSQAGS-LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 596
H+A H+++ A+ KV+G E S V ++ F R D E+ EIERL N + +
Sbjct: 9 HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKE 68
Query: 597 ANLLQTKVMALDDAKRAGAIAMFGE------KYGEQVRVVEVPGV---SMELCGGTHVNN 647
++ + ++A++ FGE E VR+++V + ++ C H
Sbjct: 69 NAPIKIYELPREEAEKX-----FGEDXYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKT 123
Query: 648 TAEIRAFKI 656
T EI KI
Sbjct: 124 TGEIGPIKI 132
>pdb|2ZVF|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|C Chain C, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|D Chain D, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|E Chain E, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|F Chain F, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|G Chain G, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|H Chain H, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
Length = 171
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 688 MKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNE 747
++ S L+V+ ++ VE E+ + R E+ L++ A A + +A +
Sbjct: 16 LREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILXERAEEFDSXK- 74
Query: 748 IRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQ 807
+V + D D +L+ AE L + AV EGKV + FS D
Sbjct: 75 ---VVAEVVDADXQALQKLAERLAE----KGAVGCLXAKGEGKV-FVVTFSGQKYD---- 122
Query: 808 AGKFIGPIAKLCGGGGGGRPNFAQ 831
A + + I ++ G GGGR + AQ
Sbjct: 123 ARELLREIGRVAKGSGGGRKDVAQ 146
>pdb|3KEW|A Chain A, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
pdb|3KEW|B Chain B, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
Length = 241
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 622 KYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAG 674
K E++R+VE+ G+ + C G H NT +++ KI + + RIE VAG
Sbjct: 177 KTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEKHKNAT-RIEYVAG 228
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 536 VHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIG 595
+ H+ HLL A+K++ G ++ + +D + R L ++E +E+ ++
Sbjct: 71 IRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQEDVEALEKRMHELAE 129
Query: 596 DANLLQTKVMALDDAKRAGAIAMFGEKY-----GEQVRVVEVPGVS-----MELCGGTHV 645
+ K ++ +A+ A GE Y E + + PG+ +++C G HV
Sbjct: 130 KNYDVIKKKVSWHEARET--FANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187
Query: 646 NNTAEIRAFKIISEQGIA----SGIRRIEAVAGEAFIEYINARDSYMKHL 691
N FK++ G S + ++ + G A+ + A ++Y++ L
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADK-KALNAYLQRL 236
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 536 VHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIG 595
+ H+ HLL A+K+ + T A V + +D + R L ++E +E+ ++
Sbjct: 71 IRHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129
Query: 596 DANLLQTKVMALDDAKRAGAIAMFGEKY-----GEQVRVVEVPGVS-----MELCGGTHV 645
+ K ++ +A+ A GE Y E + + PG+ +++C G HV
Sbjct: 130 KNYDVIKKKVSWHEARET--FANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187
Query: 646 NNTAEIRAFKIISEQG 661
N FK++ G
Sbjct: 188 PNMRFCHHFKLMKTAG 203
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 72 FGLPANRLWISVYEDDDEAF----EIWNKEVGVPVEHIKRMGADDNFWNSGATGP 122
F P + LWIS E+ E+ EV V V G+D +FW G GP
Sbjct: 13 FTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGP 67
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 414 ADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVE 457
ADLA+K P+ FL D K I E V P K DV+
Sbjct: 57 ADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK 100
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 414 ADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVE 457
ADLA+K P+ FL D K I E V P K DV+
Sbjct: 60 ADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK 103
>pdb|1VP2|A Chain A, Crystal Structure Of A Putative Xanthosine Triphosphate
PyrophosphataseHAM1 PROTEIN HOMOLOG (TM0159) FROM
THERMOTOGA Maritima At 1.78 A Resolution
pdb|1VP2|B Chain B, Crystal Structure Of A Putative Xanthosine Triphosphate
PyrophosphataseHAM1 PROTEIN HOMOLOG (TM0159) FROM
THERMOTOGA Maritima At 1.78 A Resolution
pdb|3S86|A Chain A, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|B Chain B, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|C Chain C, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|D Chain D, Crystal Structure Of Tm0159 With Bound Imp
Length = 208
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 323 VQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVS 382
++ +E GE L+ + A+ ++ P ++ ++Y GFP ++ EEH
Sbjct: 48 IEVVEDGETFLENSVKKAVVYGKKLKH-PVMADDSGLVIYSLGGFPGVMSARFMEEHSYK 106
Query: 383 VDMKGFDIEMENQRRQSQAAHNA--------VKLSVDDSAD--LAEKIPDTEFLGYD 429
M+ +E + R++ +A +SV+D + +A +I T GYD
Sbjct: 107 EKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYD 163
>pdb|4EHI|A Chain A, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
pdb|4EHI|B Chain B, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
Length = 534
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 387 GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKP 446
G D+ EN QS A LSV D + E + E LG++ LS + L NG
Sbjct: 10 GVDLGTENLYFQSNAXR--ALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIK 67
Query: 447 VIKVS 451
VI+VS
Sbjct: 68 VIEVS 72
>pdb|1DTO|A Chain A, Crystal Structure Of The Complete Transactivation Domain
Of E2 Protein From The Human Papillomavirus Type 16
Length = 221
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 684 RDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVY 730
R S+M+ LC L V +++ T E DLR + ++R + A+Y
Sbjct: 17 RGSHMETLCQRLNVCQDKILTHYENDSTDLRDHIDYWKHMRLECAIY 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,270,496
Number of Sequences: 62578
Number of extensions: 1032742
Number of successful extensions: 2439
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2370
Number of HSP's gapped (non-prelim): 34
length of query: 860
length of database: 14,973,337
effective HSP length: 107
effective length of query: 753
effective length of database: 8,277,491
effective search space: 6232950723
effective search space used: 6232950723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)