Query 002994
Match_columns 860
No_of_seqs 356 out of 2106
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 14:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0013 AlaS Alanyl-tRNA synth 100.0 4E-239 9E-244 2074.3 87.1 825 1-855 47-879 (879)
2 TIGR00344 alaS alanine--tRNA l 100.0 8E-226 2E-230 2015.1 86.1 803 1-834 38-851 (851)
3 PLN02900 alanyl-tRNA synthetas 100.0 3E-224 6E-229 2004.6 89.0 827 1-852 52-935 (936)
4 PRK00252 alaS alanyl-tRNA synt 100.0 1E-223 3E-228 2003.7 88.0 820 1-854 43-864 (865)
5 KOG0188 Alanyl-tRNA synthetase 100.0 2E-206 3E-211 1719.2 62.0 812 1-854 43-894 (895)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 8E-199 2E-203 1783.5 82.4 745 1-851 97-901 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 6E-198 1E-202 1775.2 81.4 747 1-854 100-899 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 2E-177 4E-182 1522.0 52.3 538 1-673 42-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 4E-158 9E-163 1374.2 13.4 507 1-530 38-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 1.5E-93 3.3E-98 731.2 15.1 193 1-193 40-232 (232)
11 COG2872 Predicted metal-depend 100.0 6.9E-47 1.5E-51 394.3 23.5 232 423-679 2-240 (241)
12 PLN02961 alanine-tRNA ligase 100.0 9.3E-46 2E-50 387.8 25.0 208 455-672 2-222 (223)
13 KOG2105 Predicted metal-depend 100.0 1.1E-44 2.3E-49 373.1 30.1 362 455-852 43-409 (415)
14 PLN02837 threonine-tRNA ligase 99.8 3.9E-20 8.5E-25 220.4 15.5 175 520-714 30-216 (614)
15 PRK12305 thrS threonyl-tRNA sy 99.8 2.1E-18 4.5E-23 205.2 18.0 141 534-676 7-159 (575)
16 PRK00413 thrS threonyl-tRNA sy 99.7 2E-17 4.3E-22 199.2 19.0 162 515-678 50-226 (638)
17 PRK12444 threonyl-tRNA synthet 99.7 1.9E-16 4.2E-21 190.4 19.5 142 533-676 72-228 (639)
18 TIGR00418 thrS threonyl-tRNA s 99.7 9.2E-16 2E-20 182.2 15.7 139 537-676 1-153 (563)
19 PLN02908 threonyl-tRNA synthet 99.6 6.4E-15 1.4E-19 178.1 14.0 144 532-677 118-276 (686)
20 PF07973 tRNA_SAD: Threonyl an 99.4 2.2E-13 4.7E-18 106.8 4.8 44 627-670 1-44 (44)
21 COG0441 ThrS Threonyl-tRNA syn 99.3 3.7E-12 8E-17 149.1 11.3 154 532-709 25-184 (589)
22 smart00863 tRNA_SAD Threonyl a 99.1 3.9E-11 8.4E-16 93.9 3.8 44 627-670 1-44 (44)
23 PF02272 DHHA1: DHHA1 domain; 98.2 2.2E-06 4.8E-11 73.1 5.9 65 779-849 3-68 (68)
24 KOG1637 Threonyl-tRNA syntheta 96.6 0.0019 4.2E-08 73.0 4.6 69 535-661 68-136 (560)
25 PRK14799 thrS threonyl-tRNA sy 95.9 0.0062 1.3E-07 72.5 3.9 86 562-675 30-120 (545)
26 PF01411 tRNA-synt_2c: tRNA sy 94.0 0.011 2.4E-07 70.6 -1.1 92 90-207 106-200 (552)
27 cd00768 class_II_aaRS-like_cor 93.3 0.16 3.4E-06 52.1 6.1 121 18-186 77-211 (211)
28 TIGR00644 recJ single-stranded 92.1 2.9 6.3E-05 50.2 15.5 96 752-855 328-423 (539)
29 PRK09348 glyQ glycyl-tRNA synt 83.9 2.3 5E-05 45.5 6.2 78 98-199 102-180 (283)
30 cd00733 GlyRS_alpha_core Class 82.7 2.7 5.9E-05 44.9 6.1 77 98-199 98-176 (279)
31 PF02091 tRNA-synt_2e: Glycyl- 81.9 0.72 1.6E-05 49.4 1.6 79 97-199 96-175 (284)
32 TIGR00388 glyQ glycyl-tRNA syn 80.0 3.6 7.9E-05 44.2 6.0 77 98-199 99-177 (293)
33 PRK00488 pheS phenylalanyl-tRN 79.6 2.2 4.8E-05 48.0 4.6 41 145-195 274-324 (339)
34 COG0752 GlyQ Glycyl-tRNA synth 78.4 3.8 8.3E-05 43.5 5.5 79 97-199 102-181 (298)
35 KOG1501 Arginine N-methyltrans 73.5 4.8 0.0001 46.3 5.0 74 176-249 72-156 (636)
36 PTZ00450 macrophage migration 72.1 4.2 9E-05 38.7 3.6 25 61-85 78-102 (113)
37 PRK14908 glycyl-tRNA synthetas 71.5 8.9 0.00019 48.9 7.2 72 104-199 110-181 (1000)
38 PF01422 zf-NF-X1: NF-X1 type 65.5 2.7 5.8E-05 27.6 0.5 9 120-128 12-20 (20)
39 KOG1759 Macrophage migration i 59.1 11 0.00025 35.7 3.7 26 62-87 78-103 (115)
40 PTZ00397 macrophage migration 59.0 10 0.00022 35.9 3.5 29 57-85 74-102 (116)
41 PF12999 PRKCSH-like: Glucosid 56.8 38 0.00081 34.8 7.2 95 635-731 69-173 (176)
42 COG0016 PheS Phenylalanyl-tRNA 56.2 12 0.00027 42.1 4.0 59 125-195 262-321 (335)
43 PRK11070 ssDNA exonuclease Rec 55.4 3.9E+02 0.0085 32.7 16.8 96 750-855 355-455 (575)
44 smart00438 ZnF_NFX Repressor o 46.7 8.4 0.00018 27.0 0.6 11 120-130 12-22 (26)
45 PTZ00326 phenylalanyl-tRNA syn 45.4 19 0.0004 42.8 3.4 58 125-195 425-483 (494)
46 PF01187 MIF: Macrophage migra 44.3 18 0.00039 34.1 2.6 23 63-85 78-100 (114)
47 PF01409 tRNA-synt_2d: tRNA sy 40.9 14 0.0003 39.9 1.4 22 175-196 212-233 (247)
48 COG2024 Phenylalanyl-tRNA synt 40.0 39 0.00084 38.4 4.6 88 97-196 258-345 (536)
49 PF04536 TPM: TLP18.3, Psb32 a 37.9 3.2E+02 0.007 25.1 10.1 49 746-795 21-75 (119)
50 cd00830 KAS_III Ketoacyl-acyl 36.8 11 0.00023 41.6 -0.2 77 41-127 207-284 (320)
51 PRK14538 putative bifunctional 35.4 3.4E+02 0.0075 34.7 12.5 78 762-852 602-679 (838)
52 PLN02853 Probable phenylalanyl 34.3 34 0.00074 40.5 3.3 44 149-196 423-469 (492)
53 cd00777 AspRS_core Asp tRNA sy 30.9 27 0.00059 38.4 1.7 29 175-203 248-276 (280)
54 TIGR01834 PHA_synth_III_E poly 30.6 1.3E+02 0.0029 33.8 7.0 50 676-725 264-317 (320)
55 COG0497 RecN ATPase involved i 30.4 2.2E+02 0.0049 34.4 9.2 39 677-715 298-336 (557)
56 KOG2783 Phenylalanyl-tRNA synt 29.6 29 0.00062 39.6 1.6 22 174-195 294-315 (436)
57 COG3981 Predicted acetyltransf 27.5 48 0.001 33.9 2.6 33 242-275 101-133 (174)
58 TIGR00013 taut 4-oxalocrotonat 27.0 77 0.0017 26.1 3.4 30 57-86 17-46 (63)
59 TIGR00462 genX lysyl-tRNA synt 26.5 35 0.00076 38.0 1.6 50 16-72 73-123 (304)
60 cd00776 AsxRS_core Asx tRNA sy 26.1 37 0.00081 38.1 1.8 28 175-202 290-317 (322)
61 PF11760 CbiG_N: Cobalamin syn 25.4 2.6E+02 0.0057 25.3 6.6 54 760-821 22-75 (84)
62 cd00669 Asp_Lys_Asn_RS_core As 25.1 38 0.00083 37.1 1.6 28 175-202 237-264 (269)
63 PF12329 TMF_DNA_bd: TATA elem 25.0 3.5E+02 0.0077 23.7 7.3 53 679-731 5-60 (74)
64 COG1512 Beta-propeller domains 24.5 3.9E+02 0.0084 29.5 9.1 66 749-816 65-137 (271)
65 PF02092 tRNA_synt_2f: Glycyl- 23.6 4.8E+02 0.01 31.7 10.4 64 227-299 445-508 (548)
66 COG1190 LysU Lysyl-tRNA synthe 23.3 30 0.00065 40.8 0.4 31 175-206 468-498 (502)
67 TIGR00747 fabH 3-oxoacyl-(acyl 23.3 38 0.00083 37.3 1.2 54 70-132 230-284 (318)
68 cd04766 HTH_HspR Helix-Turn-He 23.1 2.9E+02 0.0063 24.7 6.7 39 688-727 50-88 (91)
69 PLN02850 aspartate-tRNA ligase 22.9 43 0.00093 40.3 1.6 29 175-203 494-522 (530)
70 PF00152 tRNA-synt_2: tRNA syn 22.9 46 0.001 37.3 1.8 31 172-203 301-331 (335)
71 TIGR00457 asnS asparaginyl-tRN 22.5 45 0.00097 39.3 1.6 29 175-203 417-445 (453)
72 PRK01964 4-oxalocrotonate taut 22.4 91 0.002 26.0 3.0 30 56-85 16-45 (64)
73 TIGR00458 aspS_arch aspartyl-t 22.1 47 0.001 38.9 1.6 47 16-68 199-246 (428)
74 PRK09413 IS2 repressor TnpA; R 21.7 3E+02 0.0065 26.2 6.8 23 687-709 31-53 (121)
75 PTZ00425 asparagine-tRNA ligas 21.5 49 0.0011 40.2 1.7 50 16-69 343-398 (586)
76 cd00775 LysRS_core Lys_tRNA sy 21.5 47 0.001 37.4 1.4 47 16-69 76-123 (329)
77 PF11867 DUF3387: Domain of un 21.3 7.4E+02 0.016 27.9 11.0 141 172-325 34-191 (335)
78 PF10440 WIYLD: Ubiquitin-bind 21.3 2.4E+02 0.0052 24.3 5.3 46 247-305 2-47 (65)
79 PRK03932 asnC asparaginyl-tRNA 21.1 50 0.0011 38.9 1.6 29 175-203 414-442 (450)
80 PF13815 Dzip-like_N: Iguana/D 21.1 2.5E+02 0.0053 26.8 6.0 43 677-726 67-109 (118)
81 PRK06462 asparagine synthetase 21.0 52 0.0011 37.2 1.7 29 175-203 299-327 (335)
82 COG4014 Uncharacterized protei 21.0 1.2E+02 0.0026 27.6 3.5 34 426-467 15-48 (97)
83 PTZ00401 aspartyl-tRNA synthet 21.0 51 0.0011 39.9 1.6 29 175-203 514-542 (550)
84 PLN02532 asparagine-tRNA synth 20.9 52 0.0011 40.3 1.7 50 16-69 389-444 (633)
85 COG0017 AsnS Aspartyl/asparagi 20.6 60 0.0013 38.0 2.0 32 173-204 397-428 (435)
86 PLN02603 asparaginyl-tRNA synt 20.5 52 0.0011 39.9 1.6 30 174-203 528-557 (565)
87 cd06008 NF-X1-zinc-finger Pres 20.5 40 0.00087 27.1 0.5 11 120-130 22-32 (49)
88 TIGR00499 lysS_bact lysyl-tRNA 20.3 53 0.0012 39.2 1.6 48 16-68 240-293 (496)
89 PF11382 DUF3186: Protein of u 20.1 6.1E+02 0.013 28.3 9.8 69 700-773 35-109 (308)
90 cd00491 4Oxalocrotonate_Tautom 20.0 1.1E+02 0.0024 24.5 3.1 29 57-85 16-44 (58)
No 1
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-239 Score=2074.33 Aligned_cols=825 Identities=50% Similarity=0.846 Sum_probs=776.6
Q ss_pred CCCCcccccccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceE
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLW 80 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l~ 80 (860)
|+||||||+|..+||++|+||||||||+|||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||
T Consensus 47 m~~FK~~f~g~v~p~~~r~~~sQkcIR~NDieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~ 126 (879)
T COG0013 47 MVQFKPYFTGGVTPPANRAVTSQKCIRTNDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLY 126 (879)
T ss_pred cccchhhhcCCCCCCCCCeeccccccccCchhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEE
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCC--CCCCceEEEeeeec
Q 002994 81 ISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDL--GDDTRFIEFYNLVF 158 (860)
Q Consensus 81 vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~--~~~~r~lEiwNlVF 158 (860)
||||++|+||+++|++++|+|++||++++.+||||+||+ ||||||||||||+|+.+++..+.. .|++||||||||||
T Consensus 127 vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVF 205 (879)
T COG0013 127 VTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVF 205 (879)
T ss_pred EEEecCchHHHHHHHhhcCCCHHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeee
Confidence 999999999999999999999999999999999999999 999999999999999999877744 78999999999999
Q ss_pred cccccc-CCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCccccccceeeehhhhhH
Q 002994 159 MQYNKK-DDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRA 237 (860)
Q Consensus 159 ~q~~~~-~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~ 237 (860)
|||||+ .+|+|.|||+||||||||||||+|||||+|||||||+|.|||+.+++++|..|..+....+++|||||||+||
T Consensus 206 mQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs 285 (879)
T COG0013 206 MQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRS 285 (879)
T ss_pred hhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCCcCCccccccceeEEEehhHHHH
Confidence 999999 6999999999999999999999999999999999999999999999999999976552337899999999999
Q ss_pred HHhhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHH
Q 002994 238 IVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKR 317 (860)
Q Consensus 238 ~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~ 317 (860)
++|||+||++|||+|||||||||||||+||+++||++.| ||++||+.+++.|+++||||.++++.|+++|+.
T Consensus 286 ~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~~~--------fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~ 357 (879)
T COG0013 286 LAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKEP--------FLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKL 357 (879)
T ss_pred HHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCCch--------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChhcHHHHHHHHHH
Q 002994 318 EELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRR 397 (860)
Q Consensus 318 Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~~f~~~~~~~~~ 397 (860)
||++|.+||++|+++|+++++ ++++ + ++|||++||+||||||||+|||++||+++|++||+++|+.+|++||+
T Consensus 358 EEe~F~~TL~~G~~l~~~~~~----~~~~-~--~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~ 430 (879)
T COG0013 358 EEERFAKTLERGLKLLEKELA----KLKK-S--KTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRE 430 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhcc-C--CccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHH
Confidence 999999999999999999998 5544 3 58999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccCch--hHhhhhCCCCcccccccccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCc
Q 002994 398 QSQAAHNAVKLSVDDS--ADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGD 475 (860)
Q Consensus 398 ~s~~~~~~~~~~~~~~--~~~~~~~~~t~f~gY~~~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D 475 (860)
+||+++ .+....... ..+.+..++|+|+||++++++++|+.++.+++.|+++.+|++++||||+||||||||||++|
T Consensus 431 ~ar~~~-~~~~~~~~~~~~~~~~~~~~tef~gY~~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D 509 (879)
T COG0013 431 RARASA-GSGEGAKESEDLELIDKLPETEFLGYDDLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGD 509 (879)
T ss_pred Hhhhcc-ccccccchhhhhhhhccCCCceeeecccccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCc
Confidence 999755 221111111 22333367899999999999999999998876688999999999999999999999999999
Q ss_pred eEEEEeCC-CCccccceEEEEeEEEeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCC
Q 002994 476 YGFLYVTQ-GTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQ 554 (860)
Q Consensus 476 ~G~I~~~~-~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~ 554 (860)
+|+|..++ . .+.|.||||.+++.++|.+....|.+++|+.|.++|||+||..+|+||||||||++||++++|.
T Consensus 510 ~G~i~~~~~~------~~~V~dvqK~~~~~~vH~~~~~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~ 583 (879)
T COG0013 510 TGYIFGDGGG------RFEVTDVQKVGNGVIVHKGKVESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGD 583 (879)
T ss_pred eEEEEecCCc------EEEEEEEEEcCCceEEEEEeeccCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCc
Confidence 99999874 4 8999999999559999999998889999999999999999999999999999999999999999
Q ss_pred ceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECC
Q 002994 555 ETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPG 634 (860)
Q Consensus 555 ~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~~eky~~~VRVV~Igg 634 (860)
|++|+||.++++++||||+|++++|+|+|++||+.||++|++|.||++.+|++++|++.+++++|+++|++.||||+|++
T Consensus 584 hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~Ga~alfGekY~~~VRVV~ig~ 663 (879)
T COG0013 584 HVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIGD 663 (879)
T ss_pred cceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHhChHhhcCCcCCCeEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccEEEEeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q 002994 635 VSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLR 714 (860)
Q Consensus 635 ~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~l~~~v~~l~~e~k 714 (860)
+|.++||||||.|||+||.|||++++++++|+|||+|+||..|++|+++....+++++..|++ +.++..++++|++++|
T Consensus 664 ~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k 742 (879)
T COG0013 664 FSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKV-PPELLPKVERLLEELK 742 (879)
T ss_pred ceeeccCCcccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 6666669999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccee--ecccCCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEE
Q 002994 715 TARNEVANLRAKAAVYKASTISSKAFT--VGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVS 792 (860)
Q Consensus 715 ~l~k~~~~l~~~l~~~~a~~l~~~~~~--~~~~~~~~~~~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~ 792 (860)
+++|++.+|+++++......+...++. + +++++++..+++.+++.|+.+++.++++.++. +++|++ ..++|+.
T Consensus 743 ~lekel~~lk~~~~~~~~~~~~~~~~~~~i---~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~~~~-vivl~~-~~~~Kv~ 817 (879)
T COG0013 743 ELEKELERLKKKLAAAELADLLSNAKAEEI---GGVKVLAKEVDGADMKELREIADDLKKKLGSA-VIVLAS-VADGKVS 817 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccceee---CCEEEEEEEecCCCHHHHHHHHHHHHhhcCCc-EEEEEE-ecCCeEE
Confidence 999999999998888877776666444 7 89999999999999999999999999999884 888887 5666999
Q ss_pred EEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHHHHHHhh
Q 002994 793 LIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLVSVL 855 (860)
Q Consensus 793 ~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQGgg~~~~~l~~al~~~~~~l~~~L 855 (860)
++++++++++.+ ++|++|+++++..+||||||||+||||||+++.+++++++.+.+++++.|
T Consensus 818 ~~~~v~~~~~~~-~~a~~lvk~la~~~gG~GGGr~d~Aqggg~d~~~~~~al~~~~~~i~~~l 879 (879)
T COG0013 818 LVVAVSKDLTDK-VKAGELVKELAAIVGGKGGGRPDMAQGGGKDPEKLDEALELVIEWVKEKL 879 (879)
T ss_pred EEEEechhhhcc-cCHHHHHHHHHHhcCCCCCCchhhheeCCCCcccHHHHHHHHHHHHHhhC
Confidence 999999776655 99999999999999999999999999999999999999999999987653
No 2
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=7.6e-226 Score=2015.15 Aligned_cols=803 Identities=50% Similarity=0.834 Sum_probs=750.4
Q ss_pred CCCCcccccccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceE
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLW 80 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l~ 80 (860)
||||||||+|+++||++|+||||||||+|||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||
T Consensus 38 m~~fk~~f~G~~~p~~~r~~~~QkCiR~nDld~VG~t~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~ 117 (851)
T TIGR00344 38 MAQFKPIFTGIVKPPSNRLVNAQPCIRLNDIENVGRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLY 117 (851)
T ss_pred hhhhhHHhcCCCCCCCCCcccccccccccchhhhcCCCcchhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCC-CCCC--CCCCceEEEeeee
Q 002994 81 ISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCS-DVDL--GDDTRFIEFYNLV 157 (860)
Q Consensus 81 vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~-~~~~--~~~~r~lEiwNlV 157 (860)
||||++|+||++||++ +|+|++||++++.+||||+||+ ||||||||||||+|+.+++. +..+ .+|+|||||||||
T Consensus 118 vTv~~~D~ea~~iW~~-~g~~~~~i~~~~~~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlV 195 (851)
T TIGR00344 118 VTVYEDDEEAYEIWEK-HGIPAERIIRCGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLV 195 (851)
T ss_pred EEEcCCCHHHHHHHHh-cCCCHHHcccCCccCCcCCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeee
Confidence 9999999999999999 9999999999999999999999 99999999999999987762 1122 5889999999999
Q ss_pred cccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCc------c--cccccee
Q 002994 158 FMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSN------D--RTNLNLK 229 (860)
Q Consensus 158 F~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~~~------~--~~~~~~r 229 (860)
||||||++||+|+|||+||||||||||||+|||||++||||||+|.|||+.|++++|++|..+. + ..++++|
T Consensus 196 Fmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~r 275 (851)
T TIGR00344 196 FMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLR 275 (851)
T ss_pred eEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchhee
Confidence 9999999999999999999999999999999999999999999999999999999999985321 0 2356999
Q ss_pred eehhhhhHHHhhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHH
Q 002994 230 IIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQ 309 (860)
Q Consensus 230 ~iaDH~R~~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~ 309 (860)
|||||+||++|||+||++|||+|||||||||||||+|++++||++.| ||++||+.|++.|++.||||.++++
T Consensus 276 viaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~~~lg~~~~--------fl~~lv~~~~~~m~~~ypel~~~~~ 347 (851)
T TIGR00344 276 VIADHTRALAFMLADGVVPSNEGRGYVLRRLIRRALRHGKKLGLKEA--------FLYKLVPTLIEVLGDYYPELKEKQE 347 (851)
T ss_pred eehhhhhhhhhhhccCcccCCCCCchhHHHHHHHHHHHHHHhCCCch--------HHHHHHHHHHHHHhhhChHhHHhHH
Confidence 99999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChhcHH
Q 002994 310 RILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFD 389 (860)
Q Consensus 310 ~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~~f~ 389 (860)
.|++||..||++|.+||++|+++|+++++ ++ ++ +.|||++||+||||||||+|||++||+|+|++||+++|+
T Consensus 348 ~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~----~~--~~--~~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~ 419 (851)
T TIGR00344 348 FVEQILELEEERFAKTLERGLRLFEKLLK----KL--GK--KELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFE 419 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh--cC--CccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHH
Confidence 99999999999999999999999999998 44 22 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccCchhHhhhhCCCCcccccccccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCC
Q 002994 390 IEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAES 469 (860)
Q Consensus 390 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~t~f~gY~~~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpeg 469 (860)
++|++||++||++++...... +...+.+..++|+|+||++.+++|+|+++..+++.++++.+|+.++|+||+|||||||
T Consensus 420 ~~~~~~~~~sr~~~~~~~~~~-~~~~~~~~~~~t~~l~Y~~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEg 498 (851)
T TIGR00344 420 TLMAEQRERSKAASQTISFEL-QEIALANVYPATEFLGYEDLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAES 498 (851)
T ss_pred HHHHHHHHHHhhhhhcccccc-cHHHHhcccCCccccceecccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCC
Confidence 999999999998764322111 1122322236789999999999999999998888888888888899999999999999
Q ss_pred CCCCCceEEEEeCCCCccccceEEEEeEEEeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHH
Q 002994 470 GGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALK 549 (860)
Q Consensus 470 GGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~ 549 (860)
||||+|+|+|..++. .++|.+|++. +|.++|++....+++++|++|.+.|||+||+++|++|||+|||++||+
T Consensus 499 GGQp~D~G~I~~~~~------~~~V~dv~~~-~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~ 571 (851)
T TIGR00344 499 GGQIGDTGYLIANDG------KFRVVDVQKP-NGVVFHFGEVEGGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQ 571 (851)
T ss_pred CCCCCCEEEEecCCc------EEEEEEEEEE-CCEEEEEEEeccCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999986555 7999999998 799999987655778999999999999999999999999999999999
Q ss_pred hHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhcCCCCCCcEEE
Q 002994 550 KVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRV 629 (860)
Q Consensus 550 ~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~~eky~~~VRV 629 (860)
++||.+++|.|++++++++||||++++++|++++.+||+.||++|++|+||++.+++++||++.+.+++|+++|++.|||
T Consensus 572 ~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~~~~~e~y~~~VRV 651 (851)
T TIGR00344 572 KVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAFALFGEKYGEKVRV 651 (851)
T ss_pred HHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCceEEEEeCHHHHHhcchhhhcCCCCCCeEEE
Confidence 99999999999999999999999998899999999999999999999999999999999999998888899999999999
Q ss_pred EEECCcccccccccccccccccccEEEEeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 002994 630 VEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGL 709 (860)
Q Consensus 630 V~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~l~~~v~~l 709 (860)
|+|+++|.++||||||+|||+||.|+|++.+++++|++||+|+||.+|++++++.++.++++++.|+++++++++++++|
T Consensus 652 V~Ig~~d~e~CgGTHV~nTgeIg~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~l~~~L~~~~~~i~~~v~~l 731 (851)
T TIGR00344 652 VSVGDVSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVTPNELPKKIERF 731 (851)
T ss_pred EEECCeeccCCCCCccCChhhCeEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCC
Q 002994 710 LEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEG 789 (860)
Q Consensus 710 ~~e~k~l~k~~~~l~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~ 789 (860)
++++++++|++++|+++++...++.+.+.++.+ +++++++..+++.+++.|+.+++.++++.++ .++++++ ..++
T Consensus 732 ~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~---~~~~~i~~~~~~~d~~~lr~la~~l~~~~~~-~vvll~~-~~~~ 806 (851)
T TIGR00344 732 FEEWKALQKELESLKLKIADQKIDELKDKAETI---NGVKVLVEVVDAKDMKSLKTMADRLKSKLGS-AIYVLAS-FANG 806 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---CCeEEEEEEccCCCHHHHHHHHHHHHhhcCC-eEEEEEE-cCCC
Confidence 999999999999999999999999988877777 8899999888888999999999999988766 4777766 6688
Q ss_pred cEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeecc
Q 002994 790 KVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGG 834 (860)
Q Consensus 790 k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQGgg 834 (860)
++.+++++++++++++++|++|++++++.+||||||+|.||||||
T Consensus 807 k~~~v~~~~~~~~~~~~~A~~lvk~~~~~~gGkGGG~~~~AQggg 851 (851)
T TIGR00344 807 KVKLVCGVSNDVLNKGIKAGELINQIAQVLGGKGGGRPDLAQAGG 851 (851)
T ss_pred eEEEEEEEChhHhhcCCCHHHHHHHHHHHcCCCCCCcHHhcccCC
Confidence 999999999888777799999999999999999999999999985
No 3
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=2.9e-224 Score=2004.59 Aligned_cols=827 Identities=53% Similarity=0.871 Sum_probs=760.3
Q ss_pred CCCCcccccccCCC-----CCCCccccccccCC----CCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcc
Q 002994 1 MLQFKPIFLGKVPR-----QVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE 71 (860)
Q Consensus 1 M~qfk~~f~g~~~~-----~~~r~~~~Q~CiR~----nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~ 71 (860)
||||||||+|..+| |++|+|+||||||+ |||||||+|+|||||||||||||||||||+|||.|||||||++
T Consensus 52 m~~Fk~~f~G~~~p~~~~~~~~R~~~~QkCiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~ 131 (936)
T PLN02900 52 MNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKV 131 (936)
T ss_pred hhhhhhhhcCCCCCCCCCCCCCceeeecccccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHh
Confidence 99999999999998 78999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCChH------HHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCC
Q 002994 72 FGLPANRLWISVYEDDD------EAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLG 145 (860)
Q Consensus 72 l~l~~~~l~vt~~~~D~------e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~ 145 (860)
|||||+|||||||++|+ ||++||++. ||++||+++|.+||||+||+|||||||||||||+|+++++......
T Consensus 132 l~i~~~~l~vTv~~~D~~~~~d~Ea~~iW~~~--~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~ 209 (936)
T PLN02900 132 YGLPADRLYATYFGGDEKQAPDDEARAIWLDY--LPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNN 209 (936)
T ss_pred cCCCHHHEEEEEeCCCCCcCCCHHHHHHHHHh--CCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCC
Confidence 99999999999999999 999999997 9999999999999999999999999999999999999886432225
Q ss_pred CCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhC------CCccC
Q 002994 146 DDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELAN------VSYAQ 219 (860)
Q Consensus 146 ~~~r~lEiwNlVF~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~------~~y~~ 219 (860)
+|+|||||||||||||||++||+|+|||+||||||||||||+|||||++||||||+|.|||+.|++++| ..|+.
T Consensus 210 ~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~ 289 (936)
T PLN02900 210 DDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAE 289 (936)
T ss_pred CCCCEEEEeeeeeeeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 55643
Q ss_pred CccccccceeeehhhhhHHHhhhcCCCccCCCCCchHHHHHHHHHHHHHHH-hCCCCCCCCCccccchHHHHHHHHHHhc
Q 002994 220 SNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRL-LGIKGDGRGNLEGAFLPSIAEKAIELST 298 (860)
Q Consensus 220 ~~~~~~~~~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~-lg~~~~~~~~~~~~~l~~lv~~v~~~~~ 298 (860)
+....++||||||||+||++|||+||++|||+|||||||||||||+|++++ ||++.| ||++||+.|++.|+
T Consensus 290 ~~~~~~~a~rviaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~~~~lg~~~~--------fl~~lv~~v~~~~~ 361 (936)
T PLN02900 290 DDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEG--------FFPALVEVVVELSG 361 (936)
T ss_pred cccccceeeeeehhhHHHHHHHHhcCCccCCCCccHHHHHHHHHHHHHHHHhcCCCcc--------hHHHHHHHHHHHHh
Confidence 312457899999999999999999999999999999999999999999999 899999 99999999999999
Q ss_pred cCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHH
Q 002994 299 HIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEE 378 (860)
Q Consensus 299 ~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e 378 (860)
+.||||.++++.|++||..||++|.+||++|+++|+++++ ++++.+. +.|||++||+||||||||+|||++||+|
T Consensus 362 ~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~----~~~~~~~-~~l~g~~af~LydTyGfP~dlt~~ia~e 436 (936)
T PLN02900 362 DVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALA----AAKANGG-PVLSGKDAFLLYDTYGFPVDLTELMAEE 436 (936)
T ss_pred ccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCC-CcCCHHHHHHHHhccCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 5443332 4799999999999999999999999999
Q ss_pred cCceeChhcHHHHHHHHHHHHHHhhccccc--ccCc---hhHhhhhC--CCCccccccccc-ceeEEEEEEeCCeeeeee
Q 002994 379 HGVSVDMKGFDIEMENQRRQSQAAHNAVKL--SVDD---SADLAEKI--PDTEFLGYDTLS-AKAIVESLLVNGKPVIKV 450 (860)
Q Consensus 379 ~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~--~~~~---~~~~~~~~--~~t~f~gY~~~~-~~a~Vl~i~~~~~~~~~~ 450 (860)
+|++||+++|+++|++||++||++++.... ...+ ...+.+.. ++|+|+||+.++ ++|+|++++.+++.|+++
T Consensus 437 ~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~ 516 (936)
T PLN02900 437 RGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESV 516 (936)
T ss_pred cCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHhccCCCCCcccccccCCccceEEEEEEECCceeeec
Confidence 999999999999999999999876532211 1111 02222221 578999999998 999999999888889999
Q ss_pred cCCCeEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEeEEEeCCCEEEEEEEeeccccCCCCEEEEEeChhh
Q 002994 451 SKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKL 530 (860)
Q Consensus 451 ~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~r 530 (860)
++|+.++|+||+|||||||||||+|+|+|..++. ..+.|.+|++. +|.++|++...++.+.+|++|.+.|||+|
T Consensus 517 ~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~-----~~~~V~dv~k~-~g~i~H~~~~~~g~l~~G~~V~~~VD~~r 590 (936)
T PLN02900 517 SEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGG-----AVVEVSDVQKA-GGFVLHIGTVTEGSVSVGDAVTCKVDYDR 590 (936)
T ss_pred cCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCC-----CEEEEEEEEEE-CCEEEEEEEeccCCCCCCCEEEEEECHHH
Confidence 9999999999999999999999999999976442 14899999997 89999999766677899999999999999
Q ss_pred hhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHH
Q 002994 531 RQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDA 610 (860)
Q Consensus 531 R~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA 610 (860)
|+++|++|||+|||++||+++||.|+.|.|++++++++||||++++++|++++.+||+.||++|++|+||++.+++++||
T Consensus 591 R~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA 670 (936)
T PLN02900 591 RRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADA 670 (936)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-hchhhhcCCCCCCcEEEEEECCc-ccccccccccccccccccEEEEeeecccCCeEEEEEEecHHHHHHHHHHHHHH
Q 002994 611 KR-AGAIAMFGEKYGEQVRVVEVPGV-SMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYM 688 (860)
Q Consensus 611 ~~-~~~~~l~~eky~~~VRVV~Igg~-d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v~G~~A~~~~~~~~~~l 688 (860)
++ .+++++++++|++.||||+|+++ |.++||||||+|||+||.|+|++++++++|++||+|+||.+|++++++....+
T Consensus 671 ~~~~g~~~~f~e~y~~~VRVV~Ig~~~d~elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l 750 (936)
T PLN02900 671 KRINGLRAVFGEKYPDPVRVVSVGGVYSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLE 750 (936)
T ss_pred hhccChHhhcCCCCCCcEEEEEECCccceeCCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHH
Confidence 99 68888899999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC------------------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecc
Q 002994 689 KHLCSTLKV------------------------KDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGT 744 (860)
Q Consensus 689 ~~l~~~l~~------------------------~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~a~~l~~~~~~~~~ 744 (860)
++++..|++ +++++.+++++++++.++++|++++++.+++...++++++++..+
T Consensus 751 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~-- 828 (936)
T PLN02900 751 RELDSALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSA-- 828 (936)
T ss_pred HHHHHHhCCCcccchhhhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--
Confidence 999999999 999999999999999999999999999999999999988877665
Q ss_pred cCCeEEEEEEec-CCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCC
Q 002994 745 SNEIRVLVESMD-DMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGG 823 (860)
Q Consensus 745 ~~~~~~~~~~~~-~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkG 823 (860)
++ .+++..++ +.+++.|+.+++.++++.++..++++++...++++.+++++++++++++++|++|++++++.+||||
T Consensus 829 -~~-~~~v~~~~~~~d~~~Lr~la~~l~~~~~~~~vvl~~~~~~~~k~~~~~~~~~~~~~~~~~A~~lvk~~~~~~gGkG 906 (936)
T PLN02900 829 -GK-SVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKGKVSLVAAVPPGVVKKGLKAGKWLGAIAKLCGGGG 906 (936)
T ss_pred -CC-eEEEEEecCCCCHHHHHHHHHHHHhhcCCceEEEEEecCCCCeEEEEEEEChHHhhcCCCHHHHHHHHHHhcCCCC
Confidence 55 56666676 5799999999999998876532455544125778889999998888778999999999999999999
Q ss_pred CCcccceeeccCCcccHHHHHHHHHHHHH
Q 002994 824 GGRPNFAQAGGRKPENLSIALEKARADLV 852 (860)
Q Consensus 824 GG~~~~AQGgg~~~~~l~~al~~~~~~l~ 852 (860)
||+|.||||+|+++++++++++.+.++++
T Consensus 907 GG~~~~AQggg~~~~~l~~al~~~~~~~~ 935 (936)
T PLN02900 907 GGKPGFAQGQGRDAEKLDAALEKARAFAV 935 (936)
T ss_pred CCcHHHeeeCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998875
No 4
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-223 Score=2003.69 Aligned_cols=820 Identities=51% Similarity=0.860 Sum_probs=766.7
Q ss_pred CCCCcccccccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceE
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLW 80 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l~ 80 (860)
||||||||+|..+||++|+|+||||||+|||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||
T Consensus 43 m~~fk~~f~g~~~p~~~r~~~~QkCiR~nDld~VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~ 122 (865)
T PRK00252 43 MVQFKDYFLGQEKPPYPRATTSQKCIRTNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLY 122 (865)
T ss_pred hhhhhHHhcCCCCCCCCCcccccccccccchhhccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCC--CCCCCceEEEeeeec
Q 002994 81 ISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVD--LGDDTRFIEFYNLVF 158 (860)
Q Consensus 81 vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~--~~~~~r~lEiwNlVF 158 (860)
||||.+|+||++||.+.+|+|++||++++.+||||+||+|||||||||||||+|+.++++.+. ..|++||||||||||
T Consensus 123 vt~~~~D~e~~~iW~~~~g~~~~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF 202 (865)
T PRK00252 123 VTVYEDDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVF 202 (865)
T ss_pred EEEcCCCHHHHHHHHhccCCCHHHeecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeee
Confidence 999999999999999999999999999999999999999999999999999999998654433 368899999999999
Q ss_pred ccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCccccccceeeehhhhhHH
Q 002994 159 MQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAI 238 (860)
Q Consensus 159 ~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~~ 238 (860)
||||++++|+|.|||+||||||||||||+|||||++||||||+|.|||+.|++++|++|+ .++||||||||+||+
T Consensus 203 ~q~~~~~~g~~~~Lp~~~iDTG~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~~y~-----~~~a~rviaDH~R~~ 277 (865)
T PRK00252 203 MQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGVKYE-----DDVSFRVIADHIRAV 277 (865)
T ss_pred EeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCC-----CCceEEEEcchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 357999999999999
Q ss_pred HhhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHH
Q 002994 239 VYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKRE 318 (860)
Q Consensus 239 ~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~E 318 (860)
+|||+||++|||+|||||||||||||+|++++||++.| ||++||+.+++.|++.||||.++++.|++||+.|
T Consensus 278 ~f~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~~~--------~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~E 349 (865)
T PRK00252 278 AFLIADGVLPSNEGRGYVLRRILRRAVRHGRLLGIKEP--------FLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAE 349 (865)
T ss_pred HHHHccCcccCCCCcchHHHHHHHHHHHHHHHhCCCch--------HHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChhcHHHHHHHHHHH
Q 002994 319 ELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQ 398 (860)
Q Consensus 319 e~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~ 398 (860)
|++|.+||++|+++|+++++ +.++ + +.|||++||+||||||||+|||++||+++|++||+++|+++|++||++
T Consensus 350 e~~f~~tl~~G~~~~~~~~~----~~~~-~--~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~ 422 (865)
T PRK00252 350 EERFLKTLERGLKLLEEALA----KLKA-G--KVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRER 422 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hccC-C--CccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999997 4322 2 479999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccCchhHhhhhCCCCcccccccccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCceEE
Q 002994 399 SQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGF 478 (860)
Q Consensus 399 s~~~~~~~~~~~~~~~~~~~~~~~t~f~gY~~~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~ 478 (860)
||+.++.... ......+.... +|+|+||+..+++|+|++++.+++.++++.+|+.+.|+||+|+|||||||||+|+|+
T Consensus 423 s~~~~~~~~~-~~~~~~~~~~~-~t~f~~Y~~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~ 500 (865)
T PRK00252 423 ARAARKFKGD-YNALEELLDDL-ATEFVGYDTLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGV 500 (865)
T ss_pred HHhhhhcccc-hhHHHHHhhcC-CCeeeeeeeccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEE
Confidence 9876533210 01112232222 789999999999999999998888898998999999999999999999999999999
Q ss_pred EEeCCCCccccceEEEEeEEEeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceee
Q 002994 479 LYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQ 558 (860)
Q Consensus 479 I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q 558 (860)
|.. +. .++|.+|++..+|.++|++...++++++|++|.+.|||+||+++|++|||+|||++|++++||.++.|
T Consensus 501 I~~-~~------~~~V~~v~~~~~g~i~H~~~~~~~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q 573 (865)
T PRK00252 501 IED-GG------VFEVTDTQKPPNGLIVHRGKVEEGELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQ 573 (865)
T ss_pred Eee-Cc------EEEEEEEEEccCCEEEEEEEeccCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 987 44 79999999864699999997656778999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCcccc
Q 002994 559 AGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSME 638 (860)
Q Consensus 559 ~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~~eky~~~VRVV~Igg~d~e 638 (860)
.|++++++++||||++++++|++++.+||+.||++|++|+||++.+++++||.+.+++++|+++|++.||||+|+++|.+
T Consensus 574 ~Gs~~~~~~~r~Df~~~~~lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~~~~~~~~~~y~~~VRVV~Ig~~d~~ 653 (865)
T PRK00252 574 AGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGAMALFGEKYGDEVRVVSIGDFSIE 653 (865)
T ss_pred ccCcccCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhCCchhhccccCCCeEEEEEECCceee
Confidence 99999999999999998899999999999999999999999999999999999988888888999999999999999999
Q ss_pred cccccccccccccccEEEEeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHH
Q 002994 639 LCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARN 718 (860)
Q Consensus 639 ~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~l~~~v~~l~~e~k~l~k 718 (860)
+||||||+|||+||.|+|++.+++++|++||+|+||.+|++++++.++.++++++.|+++++++.++++++++++++++|
T Consensus 654 ~CgGTHV~nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l~~~~~~l~~~~~~l~~~v~~l~~e~k~l~k 733 (865)
T PRK00252 654 LCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLKELAALLKAKPSELPERVEALLEELKELEK 733 (865)
T ss_pred CCCCCccCCcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccceeecccCCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEec
Q 002994 719 EVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFS 798 (860)
Q Consensus 719 ~~~~l~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s 798 (860)
++++++++++...++++.+++..+ ++.++++..+++.+++.|+.+++.++++.++ .++++++ ..++++.++++++
T Consensus 734 ~~~~l~~~l~~~~~~~l~~~~~~i---~~~~~vv~~~~~~d~~~L~~la~~l~~~~~~-~vvll~~-~~~~k~~~vv~v~ 808 (865)
T PRK00252 734 ELEQLKAKLAAAAAGDLLAQAKEV---NGVKVLAAQVEGVDAKALRTLADDLKDKLGS-GVVVLAT-VEDGKVSLVVAVT 808 (865)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcc---CCeEEEEEEecCCCHHHHHHHHHHHHhhcCC-eEEEEEE-ccCCeEEEEEEEC
Confidence 999999999999999988776666 7888888888888999999999999888665 3666665 5577888999988
Q ss_pred cchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHHHHHHh
Q 002994 799 QGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLVSV 854 (860)
Q Consensus 799 ~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQGgg~~~~~l~~al~~~~~~l~~~ 854 (860)
+++.+++++|++|++++++.+||||||++.+|||+++++++++++++.+.+++++.
T Consensus 809 ~~~~~~gl~A~~l~k~l~~~lgGkGGGk~~~AQGgg~~~~~l~~al~~a~~~l~~~ 864 (865)
T PRK00252 809 KDLTDKGLKAGDLVKELAKIVGGKGGGRPDMAQAGGKDPAKLDEALAAVKEWLAAK 864 (865)
T ss_pred hhHhhcCcCHHHHHHHHHHhcCCCCCCcHHHeeeCCCCHHHHHHHHHHHHHHHHhh
Confidence 88877789999999999999999999999999999999999999999999988654
No 5
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-206 Score=1719.22 Aligned_cols=812 Identities=38% Similarity=0.643 Sum_probs=710.7
Q ss_pred CCCCcccccccCCCCCCCccccccccCC----CCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCC
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 76 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR~----nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~ 76 (860)
||||||+|||+ -.+++|++|+|||||+ ||||+||+|.|||||||||||||||||||+|||.|||||||++||||+
T Consensus 43 MNQFKpifLgt-~a~lkRa~NsQKCIRAGGKHNDLdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~ 121 (895)
T KOG0188|consen 43 MNQFKPIFLGT-MAKLKRAANSQKCIRAGGKHNDLDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPT 121 (895)
T ss_pred hhhcchhhhhc-hhhhHhhhhhhhHHhccCCcCChhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999998 6688999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCC--------hHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCC
Q 002994 77 NRLWISVYED--------DDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDT 148 (860)
Q Consensus 77 ~~l~vt~~~~--------D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~ 148 (860)
+|||||||++ |.||++||++ +|+|++||++++.+||||+||+||||||||||||||.++++.....+.|++
T Consensus 122 dRLYVtYF~Gde~~Gl~~D~E~r~iW~~-~Gvp~srILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp 200 (895)
T KOG0188|consen 122 DRLYVTYFGGDEKLGLEPDLECREIWNE-LGVPDSRILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDP 200 (895)
T ss_pred ceEEEEEecCccccCCCCCcHHHHHHHH-cCCChhhccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCc
Confidence 9999999996 7899999998 699999999999999999999999999999999999998876666668999
Q ss_pred ceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCcc-CCccccccc
Q 002994 149 RFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYA-QSNDRTNLN 227 (860)
Q Consensus 149 r~lEiwNlVF~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~-~~~~~~~~~ 227 (860)
.++||||||||||||+.||++.|||+||||||||||||++|||++.||||||+|.||+++|++.++.+|. ++.+.+|+|
T Consensus 201 ~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~YtG~d~d~~D~A 280 (895)
T KOG0188|consen 201 DVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGARYTGEDADGIDTA 280 (895)
T ss_pred CceeeeeeeeeeeccccCCccccCcccccccccCHHHHHHHHhcccccccchhhHHHHHHHHHhcCCCccCCccccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 445578999
Q ss_pred eeeehhhhhHHHhhhcCCCccCCCCCchHHHHHHHHHHHHHHH-hCCCCCCCCCccccchHHHHHHHHHHhccCChhhHH
Q 002994 228 LKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRL-LGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKA 306 (860)
Q Consensus 228 ~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~-lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~ 306 (860)
|||+|||+||+++||+||.+|+|+|||||||||||||+||++. ||.+.. ||.+|||+|++.|+++||||+.
T Consensus 281 yRVvADH~RtlTvalsDG~~Pdn~GrgyvLRRILRRavrya~e~l~~~~g--------~~~~LVpvvv~~lgd~fPEl~~ 352 (895)
T KOG0188|consen 281 YRVVADHARTLTVALSDGGVPDNTGRGYVLRRILRRAVRYAHEKLNAPPG--------FFSTLVPVVVETLGDAFPELKR 352 (895)
T ss_pred HHHHHHHhhhhheeeecCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCcc--------hhhhhhHHHHHHHhhhchhhhc
Confidence 9999999999999999999999999999999999999999987 999988 9999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChh
Q 002994 307 REQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK 386 (860)
Q Consensus 307 ~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~ 386 (860)
..+.|.++|..||+.|++||++|.++|++.+. +++++ ++|||+++|.||||||||+|||+.||+|+|+.||++
T Consensus 353 ~~~~v~diineEE~~F~ktl~rg~~~f~r~~~----~~~~s---~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~ 425 (895)
T KOG0188|consen 353 DPQHVIDIINEEEAQFLKTLDRGRKLFDRVAR----ELGSS---KTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDET 425 (895)
T ss_pred CHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH----hcCCC---CcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCch
Confidence 99999999999999999999999999999988 66543 689999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCc-cccc-ccccceeEEEEEEeCCeeeeeecCCCeEEEEeccCC
Q 002994 387 GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTE-FLGY-DTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTP 464 (860)
Q Consensus 387 ~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~t~-f~gY-~~~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~ 464 (860)
+|+++.++.+++|+.+..... . -....+.+.+|+|+ ...| .+..++++|+++..++..+++...|+++.||||+|+
T Consensus 426 ~fE~ar~~A~~~Sk~~~~~~~-~-i~ldvl~el~p~TdDs~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktn 503 (895)
T KOG0188|consen 426 GFEAARQEAQEKSKGAGGGKL-S-IDLDVLSELVPPTDDSFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTN 503 (895)
T ss_pred hHHHHHHHHHHHHhccCCCCC-c-ccHHHHHhhCCCCCCccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecce
Confidence 999999999999987654321 1 11122334457773 4578 678899999999999999999999999999999999
Q ss_pred ccCCCCCCCCceEEEEeCCCCccccceEEEEeEEEeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHH
Q 002994 465 FYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLL 544 (860)
Q Consensus 465 FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL 544 (860)
||+|+|||.+|+|.|...+. ++. .+.|..++- +|+++|++.. .+.+.+|++|.+.+|.+||+.+|++|||||||
T Consensus 504 FYaEqGGQ~~D~G~lv~~~~--~~~-~fnV~~~~~--gg~vvh~g~l-~~~l~vgdqv~~~~De~rR~~im~nHTaTHlL 577 (895)
T KOG0188|consen 504 FYAEQGGQIYDTGKLVIDGD--EDF-VFNVKRVQV--GGYVVHIGVL-EGDLSVGDQVELHVDEERRQLIMRNHTATHLL 577 (895)
T ss_pred eehhcCCcccccceEEEecC--ccc-eeehhhccc--CCEEEEEeee-ccccccchhHHHHhhHHHHHHHhhcchHHHHH
Confidence 99999999999999998765 112 566766665 6999999987 48899999999999999999999999999999
Q ss_pred HHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHh-chhhhcCCCC
Q 002994 545 QAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRA-GAIAMFGEKY 623 (860)
Q Consensus 545 ~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~-~~~~l~~eky 623 (860)
+.||++++ ..+.|.||+|.||++||||++..++|.+++.++|+.||++|.++.||..+.++.++|+++ ++++.|+|.|
T Consensus 578 N~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~Y 656 (895)
T KOG0188|consen 578 NFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVY 656 (895)
T ss_pred HHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCcc
Confidence 99999999 558899999999999999999889999999999999999999999999999999999997 6678899999
Q ss_pred CCcEEEEEECC---cccccccccccccccccccEEEEeeecccCCeEEEEEEecHHHHHHHHHHHHHH------------
Q 002994 624 GEQVRVVEVPG---VSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYM------------ 688 (860)
Q Consensus 624 ~~~VRVV~Igg---~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v~G~~A~~~~~~~~~~l------------ 688 (860)
+++||||.+|. ++.|+|||||+.|||+||.|.|++++++++|+|||.+|||..|.+.++......
T Consensus 657 PdpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~~~~~~~~~~~~~~k 736 (895)
T KOG0188|consen 657 PDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAEDLDKDLRKTDKALEK 736 (895)
T ss_pred CCceEEEEeccccccceeecCCcccccccccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHHHHhhhcccchhhHH
Confidence 99999999974 799999999999999999999999999999999999999999998877665211
Q ss_pred --HHHHHHhCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCCeEEEEEEecCCCH
Q 002994 689 --KHLCSTLKV------KDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDA 760 (860)
Q Consensus 689 --~~l~~~l~~------~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~d~ 760 (860)
.++...+.. ...++.+.+++++...+++.|......++.....++.+.+. . +..+++++.++. +
T Consensus 737 ei~~l~~~~~~a~iP~~~k~~~~~~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~---~---~~~~~~v~~~~~-~- 808 (895)
T KOG0188|consen 737 EIQELGENLDHAVIPYWQKDEIRELLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKES---N---PNQPLLVHYIES-S- 808 (895)
T ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---C---CCCCEEEEEecc-h-
Confidence 111111111 13444444444444444444433333222333333333221 1 445677777654 2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccH
Q 002994 761 DSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENL 840 (860)
Q Consensus 761 ~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQGgg~~~~~l 840 (860)
..+++..+. +.+++.|....+|+.+.|.+++.+.++|++|.+|+..++..+||||||++..+||.|.++..|
T Consensus 809 -------~~~k~~~~~-~~i~llsd~~~gkv~~~c~V~~~a~~~gl~a~~w~q~v~~~~ggk~ggK~~~~q~~g~~~~~l 880 (895)
T KOG0188|consen 809 -------KLLKKQAPD-KSIMLLSDDESGKVTCLCQVPQNAANKGLKASEWVQSVSGTMGGKGGGKGVLAQATGNNVGCL 880 (895)
T ss_pred -------HHHHhcCCC-CeeEEeccCCCCeEEEEEeecHHHhhccCCHHHHHHHHHHhhCCccCCccchhhhhCCcHHHH
Confidence 344555555 355555545567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 002994 841 SIALEKARADLVSV 854 (860)
Q Consensus 841 ~~al~~~~~~l~~~ 854 (860)
++|+..+..+....
T Consensus 881 ~~av~~a~~~a~~~ 894 (895)
T KOG0188|consen 881 DEAVSLATEFALLK 894 (895)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998877543
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=7.8e-199 Score=1783.49 Aligned_cols=745 Identities=34% Similarity=0.567 Sum_probs=688.2
Q ss_pred CCCCccccc-ccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccC-----cccHHHHHHHHHHhhhcccCC
Q 002994 1 MLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEFSTVEFGL 74 (860)
Q Consensus 1 M~qfk~~f~-g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfg-----dYfK~eai~~awe~lt~~l~l 74 (860)
||||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||+|||||| ++|||
T Consensus 97 m~~Fkp~f~~G~~~pp~~r~~~sQkCiR~nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~~lgi 175 (902)
T TIGR03683 97 IADFQPWVTSGLVPPPANPLVISQPCIRLNDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-EELGI 175 (902)
T ss_pred hhhhhHhhcCCCCCCCCCCceeccccccccccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-HHcCC
Confidence 999999998 99999999999999999999999999999999999999999999 999999999999999 99999
Q ss_pred CCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEe
Q 002994 75 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFY 154 (860)
Q Consensus 75 ~~~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiw 154 (860)
|++||. + +||||+|| ||||||||||| +| ||||
T Consensus 176 ~~~~i~--------------------------~---~enfW~~G--GpcGPcsEi~~-~g----------------lEiw 207 (902)
T TIGR03683 176 DPEEIT--------------------------Y---KESPWEGG--GNAGPCFEVIV-GG----------------LELA 207 (902)
T ss_pred CHHHee--------------------------e---cCCccCCC--CCCCCceeeee-Cc----------------Eeee
Confidence 998852 1 69999999 99999999999 32 9999
Q ss_pred eeecccccccC-------CCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCc------
Q 002994 155 NLVFMQYNKKD-------DGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSN------ 221 (860)
Q Consensus 155 NlVF~q~~~~~-------~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~~~------ 221 (860)
|||||||+|++ ||+|+|||+||||||||||||+|||||+|||||| +|.|||+.|++++|++|..+.
T Consensus 208 nlVFmq~~~~~~~~~~~~~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~ 286 (902)
T TIGR03683 208 TLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENA 286 (902)
T ss_pred eeeeeeeccccccccccCCCeeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhh
Confidence 99999999998 9999999999999999999999999999999999 999999999999999885320
Q ss_pred ---------ccc---------------------c-----cceeeehhhhhHHHhhhcCCCccCCCCCchHHHHHHHHHHH
Q 002994 222 ---------DRT---------------------N-----LNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVR 266 (860)
Q Consensus 222 ---------~~~---------------------~-----~~~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrilRRa~~ 266 (860)
+.. + .++||||||+||++|||+||++|||+|||||||||||||+|
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r 366 (902)
T TIGR03683 287 RLAGMMDIEDEEDLRELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLR 366 (902)
T ss_pred hhccccCccccchhhHHhhhhhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHH
Confidence 000 2 58999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 002994 267 TGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRE 346 (860)
Q Consensus 267 ~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~ 346 (860)
++++||++.| |++||+.+++.|++.||||.++++.|++||+.||++|.+||++|.++|+++++ +
T Consensus 367 ~~~~lg~~~~---------l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~----~--- 430 (902)
T TIGR03683 367 LMRELGLDIP---------LSDLVEMQLEELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLK----T--- 430 (902)
T ss_pred HHHHhCCCcc---------HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c---
Confidence 9999999988 89999999999999999999999999999999999999999999999999987 2
Q ss_pred CCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChh-cHHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCcc
Q 002994 347 SGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEF 425 (860)
Q Consensus 347 ~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~t~f 425 (860)
+ +.|||++||+||||||||+|||++||+++|++||++ +|+++|++||++|+++.+. .. ........+++|+|
T Consensus 431 -~--~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~vd~~~~F~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~T~~ 503 (902)
T TIGR03683 431 -K--KEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNFYSIVAERHEKEEKEEEL-PK---DYEERAKDLPETRR 503 (902)
T ss_pred -C--CcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcccCCccHHHHHHHHHHHHHhcccc-cc---chhHHHhcCCCceE
Confidence 2 479999999999999999999999999999999998 9999999999999875321 01 11122234688999
Q ss_pred ccccc---ccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEeEEEeCC
Q 002994 426 LGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLG 502 (860)
Q Consensus 426 ~gY~~---~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~ 502 (860)
+||++ .+++|+|+++.. .+|+||+|||||||||||+|+|+|..++. .++|.+|++. +
T Consensus 504 l~y~~~~~~e~~a~Vl~i~~-------------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~------~~~V~dv~k~-~ 563 (902)
T TIGR03683 504 LFYEDPTMREFEAKVLGVFD-------------NYVVLDQTAFYPEGGGQPADTGYLITNGG------KIRVVDVQKV-G 563 (902)
T ss_pred eccccCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCc------EEEEEEEEEE-C
Confidence 99998 688999999973 26999999999999999999999987765 7999999997 8
Q ss_pred CEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHH
Q 002994 503 SVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTE 582 (860)
Q Consensus 503 g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~ 582 (860)
|.++|++. .+.+++|++|.++|||+||+++|++|||+|||++||+++||.|++|+|++++++++||||+|++++|+++
T Consensus 564 g~i~H~~~--~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee 641 (902)
T TIGR03683 564 GVIVHKVD--GEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEE 641 (902)
T ss_pred CEEEEEeC--CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHH
Confidence 99999996 2347899999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCcccccccccccccccccccEEEEeee
Q 002994 583 LEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQ 660 (860)
Q Consensus 583 l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~ 660 (860)
+.+||+.||++|++|+||++.+++++||.+.+..+++ +.+|++.||||+|+++|.++||||||.|||+||.|+|++.+
T Consensus 642 l~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~~ 721 (902)
T TIGR03683 642 IKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPIKILKTE 721 (902)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCceEEEEEEE
Confidence 9999999999999999999999999999998877777 56788999999999999999999999999999999999999
Q ss_pred cccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccce
Q 002994 661 GIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAF 740 (860)
Q Consensus 661 ~~~~G~~RI~~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~a~~l~~~~~ 740 (860)
++++|++||+|+||.+|++|+++.++.+++++..|+++++++++++++|++++++++|++++|+++++...++.+.++++
T Consensus 722 ~i~~Gv~RIe~v~G~~A~~~~~~~~~~l~~~a~~L~~~~~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~~~~l~~~~~ 801 (902)
T TIGR03683 722 RIQDGVERIEFAAGEAALEYIQELEDLLRESSDILKVPPEQLPETVKRFFEEWKEQRKEIERLKKKLAELKIYELISEAE 801 (902)
T ss_pred EecCCeEEEEEEEChHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred eecccCCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcC
Q 002994 741 TVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCG 820 (860)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~g 820 (860)
.+ +++++++..+ +.|++.|+.+++.++++ + .+++|++ ..++++.+++++++++ +++|++|++++++.+|
T Consensus 802 ~i---~g~~vi~~~~-~~d~~~lr~la~~l~~~--~-~vvvl~~-~~~~k~~~v~~~~~~~---~~~A~~lvk~l~~~lg 870 (902)
T TIGR03683 802 RI---GGVEVIVELV-DADMDELQEIAEKLAEK--G-LVVVLVS-GGGGNGRVVISSGEKA---GVDAGELVREIAKELG 870 (902)
T ss_pred ec---CCEEEEEEEe-CCCHHHHHHHHHHHhcC--C-cEEEEEE-ccCCcEEEEEEEChhH---hhhHHHHHHHHHHhcC
Confidence 77 8889988877 67999999999999765 3 3667766 5567888888877665 5999999999999999
Q ss_pred CCCCCcccceeeccCCcccHHHHHHHHHHHH
Q 002994 821 GGGGGRPNFAQAGGRKPENLSIALEKARADL 851 (860)
Q Consensus 821 GkGGG~~~~AQGgg~~~~~l~~al~~~~~~l 851 (860)
|||||+|++|||++++++++++|++.+.+.|
T Consensus 871 GkGGGk~~~AQGgg~~~~~l~~al~~~~~~l 901 (902)
T TIGR03683 871 GGGGGKPDLAQGGGPDDLKIDEALEKIKSFL 901 (902)
T ss_pred CCcCCchhheeecCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998876
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.4e-198 Score=1775.20 Aligned_cols=747 Identities=33% Similarity=0.543 Sum_probs=688.7
Q ss_pred CCCCccccc-ccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccC-----cccHHHHHHHHHHhhhcccCC
Q 002994 1 MLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEFSTVEFGL 74 (860)
Q Consensus 1 M~qfk~~f~-g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfg-----dYfK~eai~~awe~lt~~l~l 74 (860)
||||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||+|||||||++|||
T Consensus 100 m~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi 179 (900)
T PRK13902 100 IYDFQPWVTSGLVPPPANPLVISQPCIRLNDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGI 179 (900)
T ss_pred hhhhhHHhcCCCCCCCCCCceecccccchhhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCC
Confidence 999999998 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEe
Q 002994 75 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFY 154 (860)
Q Consensus 75 ~~~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiw 154 (860)
||+||. + +||||+|| ||||||||||| +| ||||
T Consensus 180 ~~~~I~--------------------------~---~enfW~~G--GpcGPcsEi~~-~g----------------lEiw 211 (900)
T PRK13902 180 DPEEIT--------------------------F---KESWWEGG--GNAGPCFEVLV-RG----------------LELA 211 (900)
T ss_pred CHHHee--------------------------e---cccccCCC--CCCCCceeeee-CC----------------EEee
Confidence 998752 1 69999999 99999999999 32 9999
Q ss_pred eeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccC--------------C
Q 002994 155 NLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQ--------------S 220 (860)
Q Consensus 155 NlVF~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~--------------~ 220 (860)
|||||||+++ +|+|+|||+||||||||||||+||+||+|||||| +|.|||+.|++++|++|+. +
T Consensus 212 nlVFmqy~~~-~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~ 289 (900)
T PRK13902 212 TLVFMQYKKD-GNRYVEMPLKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMD 289 (900)
T ss_pred eeeeeEEEcC-CCeeeeCCCCeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCC
Confidence 9999999998 9999999999999999999999999999999999 9999999999999999853 1
Q ss_pred c-c-c------c-------------------ccceeeehhhhhHHHhhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCC
Q 002994 221 N-D-R------T-------------------NLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGI 273 (860)
Q Consensus 221 ~-~-~------~-------------------~~~~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~ 273 (860)
. + . . ..++|+||||+||++|||+||++|||+|||||||||||||+|++++||+
T Consensus 290 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~~~lg~ 369 (900)
T PRK13902 290 IEEIEDLRSLRQKVAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLLDELGL 369 (900)
T ss_pred cccchhHHHHHHHHHhhcccchhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 0 0 0 1 2699999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcc
Q 002994 274 KGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRL 353 (860)
Q Consensus 274 ~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i 353 (860)
+.| |++||+.+++.|++.||||.++++.|++||..||++|.+||++|.++|+++++ +. +.|
T Consensus 370 ~~~---------l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~----~~------~~l 430 (900)
T PRK13902 370 DVP---------LSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRETLERGKRIVERLAK----KK------EEI 430 (900)
T ss_pred Ccc---------HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc------CCC
Confidence 988 89999999999999999999999999999999999999999999999999997 32 269
Q ss_pred chHHHHHHhhccCCChhhHHHHHHHcCceeCh-hcHHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCccccccc--
Q 002994 354 SGQDAFLLYDTFGFPVEITKEVAEEHGVSVDM-KGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDT-- 430 (860)
Q Consensus 354 ~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~-~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~t~f~gY~~-- 430 (860)
||++||+||||||||+|||++||+++|++||+ ++|+++|++||++|+++... .. ........+++|+|+||++
T Consensus 431 ~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~T~~l~y~~~~ 506 (900)
T PRK13902 431 PLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLVAERHEKAEEEEEE--PV--VEEERLKDLPETEKLFYEDPY 506 (900)
T ss_pred CHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHHHHHHHHHHHHhhcccc--cc--chhhHhhcCCCceEeccccCc
Confidence 99999999999999999999999999999999 89999999999999874211 01 1111123468899999999
Q ss_pred -ccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEeEEEeCCCEEEEEE
Q 002994 431 -LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKG 509 (860)
Q Consensus 431 -~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~ 509 (860)
.+++|+|+++.. .+|+||+|||||||||||+|+|+|..++. .++|.+|++. +|.++|++
T Consensus 507 ~~~~~a~Vl~i~~-------------~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~------~~~V~dv~k~-~g~i~H~~ 566 (900)
T PRK13902 507 MREFEAKVLGVID-------------NYVVLDQTAFYPEGGGQPADTGVLIVDGK------GYKVVDVQKV-GGVIVHVL 566 (900)
T ss_pred cceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCc------EEEEEEEEEE-CCEEEEEe
Confidence 688999999983 27999999999999999999999987765 7999999998 89999999
Q ss_pred EeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHH
Q 002994 510 TIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERL 589 (860)
Q Consensus 510 ~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~ 589 (860)
.. +.+.+|++|.++|||+||+++|++|||+|||++||+++||.|++|+|++++++++||||+|++++|++++.+||+.
T Consensus 567 ~~--~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~ 644 (900)
T PRK13902 567 EG--EPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERL 644 (900)
T ss_pred CC--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 53 4455699999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHhcCCCeEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCcccccccccccccccccccEEEEeeecccCCeE
Q 002994 590 INGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIR 667 (860)
Q Consensus 590 vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~ 667 (860)
||++|++|+||++.+++++||.+.+..+++ +++|++.||||+|+|+|.++||||||.|||+||.|+|++++++++|++
T Consensus 645 vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~ 724 (900)
T PRK13902 645 ANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKILKTERIQDGVE 724 (900)
T ss_pred HHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeE
Confidence 999999999999999999999998877777 678889999999999999999999999999999999999999999999
Q ss_pred EEEEEecHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCC
Q 002994 668 RIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNE 747 (860)
Q Consensus 668 RI~~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~a~~l~~~~~~~~~~~~ 747 (860)
||+|+||.+|++|+++.++.++++++.|+++++++++++++|++++++++|++++|+++++...++.+..+++.+ ++
T Consensus 725 RIe~v~G~~A~~~~~~~~~~l~~~a~~L~~~~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~~~~l~~~~~~~---~g 801 (900)
T PRK13902 725 RLEFAAGDAAVEYIQELEDLLKEAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELLSKAEEV---GG 801 (900)
T ss_pred EEEEEEChHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEe---CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988888878 88
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcc
Q 002994 748 IRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRP 827 (860)
Q Consensus 748 ~~~~~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~ 827 (860)
+++++..+ +.+++.|+.+++.++++. + . +++++ .+++..+++++++++. ++|++|++++++.+||||||+|
T Consensus 802 ~~~i~~~~-~~d~~~Lr~~a~~l~~~~-~-~-vvl~~--~~~k~~~v~~~~~~~~---~~a~~lvk~l~~~~gGkGGGk~ 872 (900)
T PRK13902 802 VKVVVEEV-DADEDELRKIANELAKEG-K-V-ALVVL--GNGGGQIVVGVGEDVG---VNAGEIVRELAKVLGGKGGGKP 872 (900)
T ss_pred EEEEEEEe-CCCHHHHHHHHHHHHhcC-C-e-EEEEE--cCCcEEEEEEEChhhh---hhHHHHHHHHHHhcCCCCCCch
Confidence 99998888 779999999999998874 3 3 55554 4567888888877653 8999999999999999999999
Q ss_pred cceeeccCCcccHHHHHHHHHHHHHHh
Q 002994 828 NFAQAGGRKPENLSIALEKARADLVSV 854 (860)
Q Consensus 828 ~~AQGgg~~~~~l~~al~~~~~~l~~~ 854 (860)
++|||+|+++++++++++.+.+.+++.
T Consensus 873 ~~AQGgg~~~~~l~~al~~~~~~l~~~ 899 (900)
T PRK13902 873 DLAQGGGPDPKKKEEALEAAKEVLKEA 899 (900)
T ss_pred HheeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988653
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-177 Score=1521.98 Aligned_cols=538 Identities=40% Similarity=0.740 Sum_probs=505.9
Q ss_pred CCCCcccccccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcc--cCCCCCc
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGLPANR 78 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~--l~l~~~~ 78 (860)
||||||||+|.++||++|+|+||||||+||||||| |+|||||||||||||||||||+|||+|||||||++ |||||+|
T Consensus 42 m~~fk~~f~G~~~p~~~r~~~~QkCiR~~Dle~VG-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~r 120 (594)
T PRK01584 42 MHPLVPYLLGEPHPSGTRLVDVQKCLRTGDIDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDK 120 (594)
T ss_pred hhhhhHHhcCCCCCCCCCccccccccccccccccC-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHH
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999998 9999999
Q ss_pred eEEEEeCC------hHHHHHHHHHhcCCCCCcccccCCCCCcc-cCCCCCCCCCceEEEeecCCCCCCCCC--CCCCCCc
Q 002994 79 LWISVYED------DDEAFEIWNKEVGVPVEHIKRMGADDNFW-NSGATGPCGPCSEIYYDFHPDRGCSDV--DLGDDTR 149 (860)
Q Consensus 79 l~vt~~~~------D~e~~~iw~~~~g~~~~~I~~~~~~dnfW-~~G~~GpcGpcsEi~~d~g~~~~~~~~--~~~~~~r 149 (860)
||||||++ |+||++||++ +|+|++||++++.+|||| +||++||||||||||||+|++ ++... ..++|+|
T Consensus 121 l~vTv~~~~~~~~~D~Ea~~iW~~-~g~~~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r 198 (594)
T PRK01584 121 LYVTVFEGDEEIPRDEETASVWES-LGIPKDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGK 198 (594)
T ss_pred eEEEEeCCCCCCCCCHHHHHHHHH-cCCCHHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCc
Confidence 99999998 9999999999 899999999999999999 899999999999999999987 43221 1147899
Q ss_pred eEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCcccccccee
Q 002994 150 FIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLK 229 (860)
Q Consensus 150 ~lEiwNlVF~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~~~~~~~~~~r 229 (860)
||||||||||||||++||+|+|||+||||||||||||+|||||++||||||+|.|||+.|++++|++|+... ..+.|+|
T Consensus 199 ~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~~y~~~~-~~~~a~r 277 (594)
T PRK01584 199 YFEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKIYGQNE-EDDRSIR 277 (594)
T ss_pred eEEEeeeeeeeeeecCCCccccCCCCceeCCcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCCCcCCCC-CCceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999997433 4578999
Q ss_pred eehhhhhHHHhhhcC--CCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHh
Q 002994 230 IIGDHLRAIVYLLSD--GVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAR 307 (860)
Q Consensus 230 ~iaDH~R~~~~~i~d--G~~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~ 307 (860)
|||||+||++|||+| |++|||+|||||||||||||+|+|++||++.| ||++||+.|++.|++.||||.++
T Consensus 278 vIaDH~R~~~f~i~D~~Gv~PsN~grGYvlRrilRRa~r~~~~lg~~~~--------fl~~lv~~v~~~~~~~ypel~~~ 349 (594)
T PRK01584 278 IIADHIRAACFILGDPFVVLPSNVGQGYVLRRLIRRSIRHAKKLGIESH--------FLADLVDSVEEIYGSFYPELTEK 349 (594)
T ss_pred EEecHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHhCCCch--------hHHHHHHHHHHHHhhhChHHHHh
Confidence 999999999999999 99999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChhc
Q 002994 308 EQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKG 387 (860)
Q Consensus 308 ~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~~ 387 (860)
++.|++||+.||++|.+||++|+++|+++++ ++++ + +.|||++||+||||||||+|||++||+|+|++||+++
T Consensus 350 ~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~----~~~~-~--~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~ 422 (594)
T PRK01584 350 KDFIKEELNKEEEKFFKTLRKGEQEFIKLIP----NLGS-S--KIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREG 422 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhcc-C--CccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHH
Confidence 9999999999999999999999999999998 5432 3 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCcccccccccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccC
Q 002994 388 FDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYA 467 (860)
Q Consensus 388 f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~t~f~gY~~~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYp 467 (860)
|+++|++||++||++. ..+|+
T Consensus 423 f~~~~~~~~~~~~~~~------------------~~~f~----------------------------------------- 443 (594)
T PRK01584 423 FDEHFKKHQKVSKKGA------------------DKVFK----------------------------------------- 443 (594)
T ss_pred HHHHHHHHHHHHhhcc------------------ccccc-----------------------------------------
Confidence 9999999998887520 00121
Q ss_pred CCCCCCCceEEEEeCCCCccccceEEEEeEEEeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHH
Q 002994 468 ESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAA 547 (860)
Q Consensus 468 egGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aA 547 (860)
||++|+|. .+|++|||+|||++|
T Consensus 444 ---g~~~d~g~------------------------------------------------------~~~r~HTAtHLL~~A 466 (594)
T PRK01584 444 ---GGLADHSY------------------------------------------------------ETTKLHTATHLLHKA 466 (594)
T ss_pred ---CCcCcccc------------------------------------------------------cHHHHHHHHHHHHHH
Confidence 35666642 389999999999999
Q ss_pred HHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhcCCCCCCcE
Q 002994 548 LKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQV 627 (860)
Q Consensus 548 l~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~~eky~~~V 627 (860)
++++||.++.|.|++++++++||||++++++|++++.+||+.||++|++|+||++.+++++||.+.+..++|+++|++.|
T Consensus 467 Lr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~~~~~lf~e~y~~~V 546 (594)
T PRK01584 467 LRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEAREKGAMALFGEKYEDIV 546 (594)
T ss_pred HHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHHhcchhhhccccCCCcE
Confidence 99999999999999999999999999988999999999999999999999999999999999999888888988999999
Q ss_pred EEEEECCcccccccccccccccccccEEEEeeecccCCeEEEEEEe
Q 002994 628 RVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVA 673 (860)
Q Consensus 628 RVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v~ 673 (860)
|||+|+++|.++||||||+|||+||.|+|++++++++|+|||+|+.
T Consensus 547 RVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 547 KVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred EEEEECCeeeeCCCCCCCCCcccCceEEEEecccccCCeEEEEEEe
Confidence 9999999999999999999999999999999999999999999985
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=4.3e-158 Score=1374.20 Aligned_cols=507 Identities=52% Similarity=0.889 Sum_probs=426.6
Q ss_pred CCCCcccccccC-CCCCCCccccccccCCC----CccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCC
Q 002994 1 MLQFKPIFLGKV-PRQVPRAATSQRCIRTN----DVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLP 75 (860)
Q Consensus 1 M~qfk~~f~g~~-~~~~~r~~~~Q~CiR~n----Dl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~ 75 (860)
||||||||+|.+ +||++|+|+||||||++ ||||||+|+|||||||||||||||||||+|||.|||||||++||||
T Consensus 38 m~~fkp~f~g~~~~p~~~r~~~~Q~CiR~~GkhnDld~VG~t~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~ 117 (552)
T PF01411_consen 38 MNQFKPYFLGGEVPPPANRLVSSQKCIRTGGKHNDLDNVGRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIP 117 (552)
T ss_dssp GGGGCCCCTTSSS--SSSCEEEEEEEE-EETTEECGGGTTTSSS--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHhcCCCCCCCCCcccccceeeccCCCcchhhhcCCCceEeeehhhccccccccccHHHHHHHHHHHHHhhcCCC
Confidence 999999999999 99999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCC---CCCCCCCceEE
Q 002994 76 ANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSD---VDLGDDTRFIE 152 (860)
Q Consensus 76 ~~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~---~~~~~~~r~lE 152 (860)
|+|||||||.+|+||++||++..|+|++||++++.++|||+||++||||||||||||+|+++++.. ...++++||+|
T Consensus 118 ~~~l~vt~~~~d~ea~~~w~~~~g~~~~~i~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~e 197 (552)
T PF01411_consen 118 PDRLYVTVFEWDGEAGEIWEKIVGGPEERILVFGKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLE 197 (552)
T ss_dssp GGGEEEEEECCECCCCCCCCECCTTECCCEEEE-CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECC
T ss_pred hHhEEEEEeCCchhHHHHHHHhcCCCHHHeEecCCCCceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHH
Confidence 999999999999999999999989999999999999999999999999999999999999998632 23367899999
Q ss_pred EeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCccccccceeeeh
Q 002994 153 FYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIG 232 (860)
Q Consensus 153 iwNlVF~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~~~~~~~~~~r~ia 232 (860)
|||+|||||++++||++.|||+++|||||||||++++|||++|||+||+|.|+++.++++++.+|.... ..+.++|+||
T Consensus 198 iwn~vf~q~~~~~~g~~~~L~~~~idtGmgler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~~y~~~~-~~~~a~rvIa 276 (552)
T PF01411_consen 198 IWNLVFMQYNRDEDGSLEPLPKKNIDTGMGLERLAAVLQGVRSNYDTDLFMPIIEAIEELSGVPYKDEE-EIDVALRVIA 276 (552)
T ss_dssp CCCCCCCEEEETTTSHCCCCCCCCCCCCEEHHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC--TTSSC-CCHHHHHHHH
T ss_pred HHHHHHHHhccccccccccccchhhhcCCCcHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCCCccccc-ccccEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999996544 6788999999
Q ss_pred hhhhHHHhhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHH
Q 002994 233 DHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRIL 312 (860)
Q Consensus 233 DH~R~~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~ 312 (860)
||+||++|||+||++|||+|||||||||||||+|++++||++.| ||++||+.|++.|++.||||.++++.|.
T Consensus 277 DH~Ra~~f~i~DGv~PsN~GrGYvlRriiRRa~r~~~~lg~~~~--------fl~~lv~~vi~~~~~~ypel~~~~~~I~ 348 (552)
T PF01411_consen 277 DHIRALTFAIADGVLPSNEGRGYVLRRIIRRAVRFGRKLGIEEP--------FLYELVPVVIESMGDFYPELKENKDYIK 348 (552)
T ss_dssp HHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SS----------HHHHHHHHHHHHTTTGTHHHHCHHHHH
T ss_pred chhhceeeEecCCeeecccCCcchHHHHHHHHHHHHHHhCCCcc--------chHHHHHHHHHHhhccChhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChhcHHHHH
Q 002994 313 EELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEM 392 (860)
Q Consensus 313 ~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~~f~~~~ 392 (860)
+||+.||++|.+||++|+++|+++++ ++++ + +.|||++||+||||||||+|||++||+++|++||+++|+++|
T Consensus 349 ~ii~~EE~~F~~TL~~G~~~l~~~i~----~~~~-~--~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m 421 (552)
T PF01411_consen 349 DIIKEEEERFLKTLERGLKLLEKLIK----KLKK-K--KELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAM 421 (552)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHC-C--SEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hhcc-c--cCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHH
Confidence 99999999999999999999999998 6554 3 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccCchhHhhhhCCCCcccccccccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCC
Q 002994 393 ENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQ 472 (860)
Q Consensus 393 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~t~f~gY~~~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ 472 (860)
++||++||++++...........+.+...+|+|+||+.++++|+|++++.+++.+..+.+++...||||+||||||||||
T Consensus 422 ~~qr~~sr~~~~~~~~~~~~~~~~~~l~~~teF~gYe~~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ 501 (552)
T PF01411_consen 422 EEQRERSRAAKKKKSSIEEDVSALAELPKTTEFVGYEYLECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQ 501 (552)
T ss_dssp HHHCHHHCCHH--------SSSTTTTCHHHEETCCCC------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB
T ss_pred HHHHHHhhhccccccchhhhHHHHhhhhcccccceeecccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCC
Confidence 99999998776542211111112222122478999999999999999998888888888888889999999999999999
Q ss_pred CCceEEEEeCCCCccccceEEEEeEEEeCCCEEEEEEEeeccccCCCCEEEEEeChhh
Q 002994 473 IGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKL 530 (860)
Q Consensus 473 ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~r 530 (860)
|+|+|+|..++. .+.|.+|++. +|+++|++....+.+++|+.|.++|||+|
T Consensus 502 ~~D~G~I~~~~~------~~~V~dv~k~-~g~i~H~~~~~~g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 502 PGDTGTIIGDGG------EFEVTDVQKV-GGVILHIGEVESGSLKVGDEVTAEVDWER 552 (552)
T ss_dssp ----EEECCTTE------EEEEEEEEEE-TTEEEEEESSG-GG--TTSEEEEEE-HHH
T ss_pred CCCeEEEeecce------EEEEEEEEEE-CCEEEEEEeccCCCCCCCCEEEEEecCCC
Confidence 999999998776 8999999999 69999999987788999999999999987
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=1.5e-93 Score=731.21 Aligned_cols=193 Identities=57% Similarity=1.072 Sum_probs=188.1
Q ss_pred CCCCcccccccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceE
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLW 80 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l~ 80 (860)
||||||||+|.++||++|+|++|||||+|||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||
T Consensus 40 M~~Fkp~f~G~~~p~~~r~~~~QkCiR~~DienVG~t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~ 119 (232)
T cd00673 40 MNQFKPIFLGEVPPPANRLVNSQKCIRAGDIDNVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLY 119 (232)
T ss_pred hhhhhHHhcCCCCCCCCceeeeeeceecCChhhccccccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeeccc
Q 002994 81 ISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQ 160 (860)
Q Consensus 81 vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q 160 (860)
||||++|+||++||.+.+|+|++||++++.+||||+||++||||||||||||+|+++++.....+||+||||||||||||
T Consensus 120 vTv~~~dde~~~~w~~~~g~~~~~i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmq 199 (232)
T cd00673 120 VSVFEGDDEEEAIWWWKIGLPGIRIERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQ 199 (232)
T ss_pred EEEeCCCHHHHHHHHHhhCCCHHHeeeCCccCCCCCCCCCcCCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999887544457899999999999999
Q ss_pred ccccCCCccccCccCcccccchHHHHHHHHhCC
Q 002994 161 YNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 193 (860)
Q Consensus 161 ~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~ 193 (860)
|+|+++|+|.|||+||||||||||||+|||||+
T Consensus 200 y~r~~~g~l~pLp~k~IDTGmGlERla~vlQg~ 232 (232)
T cd00673 200 YNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred eeccCCCCCccCCCCeeeCCcCHHHHHHHHcCC
Confidence 999999999999999999999999999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=6.9e-47 Score=394.31 Aligned_cols=232 Identities=34% Similarity=0.454 Sum_probs=204.8
Q ss_pred Cccccccc---ccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEeEEE
Q 002994 423 TEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKK 499 (860)
Q Consensus 423 t~f~gY~~---~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k 499 (860)
|+-++|++ .+++|+|+.+..+ .|+||+|+|||+|||||+|+|+|.+.++ ...|.++.+
T Consensus 2 T~~ly~~D~y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~------~~~~~~~~~ 62 (241)
T COG2872 2 TEKLYYDDSYLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGG------EYVVEDVTK 62 (241)
T ss_pred ccceeccccccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCc------eEEEEEEEe
Confidence 44455554 5678999998753 6999999999999999999999999988 889999998
Q ss_pred eCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCC
Q 002994 500 SLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLL 579 (860)
Q Consensus 500 ~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt 579 (860)
. +..|+|++... ..+++|++|.+.|||+||+++||+|||+|||++++.+.++ ....|+++.+++.|+||+.+. +
T Consensus 63 ~-~~~I~H~~~~~-~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~ 136 (241)
T COG2872 63 D-GEEIVHVLAEH-AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--T 136 (241)
T ss_pred c-ceEEEEEecCc-ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--c
Confidence 8 67899999864 5578999999999999999999999999999999999998 445799999999999998644 8
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchh-hhcC---CCCCCcEEEEEECCcccccccccccccccccccEE
Q 002994 580 DTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAI-AMFG---EKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFK 655 (860)
Q Consensus 580 ~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~-~l~~---eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fk 655 (860)
++.+.++++++|++|.+|+||...+++.+||.+.+.. ++-. +...+.+|+|+|+|+|.+|||||||+||+|||.|+
T Consensus 137 ~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Ik 216 (241)
T COG2872 137 EDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIK 216 (241)
T ss_pred hhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEECCeeccCCCCcccCCccceEEEE
Confidence 9999999999999999999999999999999987543 2222 11235799999999999999999999999999999
Q ss_pred EEeeecccCCeEEEEEEecHHHHH
Q 002994 656 IISEQGIASGIRRIEAVAGEAFIE 679 (860)
Q Consensus 656 I~~~~~~~~G~~RI~~v~G~~A~~ 679 (860)
|++.++++++.+||+|.+|.+|..
T Consensus 217 i~k~e~k~k~~~Rv~f~~~~~~~~ 240 (241)
T COG2872 217 ILKTEKKGKGNRRVYFTLGERASA 240 (241)
T ss_pred EEEEEEecCceEEEEEEecccccC
Confidence 999999999999999999998753
No 12
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=9.3e-46 Score=387.82 Aligned_cols=208 Identities=26% Similarity=0.416 Sum_probs=176.3
Q ss_pred eEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEeEEEeCCCEEEEEEEeec------cccCCCCEEEEEeCh
Q 002994 455 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIRE------GVLEVGREVEAIVDP 528 (860)
Q Consensus 455 ~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~------g~l~~G~~V~~~VD~ 528 (860)
.+.|+||+|+|||||||||+|+|+|...+. ...+.|.+|++. +|.++|++.... ++|.+|++|.++|||
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~----~~~~~V~~v~~~-~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~ 76 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGG----DTKFSVQDVRRK-DGVVYHYGVFEGSNPESASPFEAGDEVTVTVDE 76 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCC----CcEEEEEEEEEE-CCEEEEEEEecCcccccCCCCCCCCEEEEEECH
Confidence 368999999999999999999999986432 126899999998 799999986532 468899999999999
Q ss_pred hhhhHHHHHhhHHHHHHHHHHhH-hCCceeeccccccCCcEEEecCCCCCCCHHH----HHHHHHHHHHHHhcCCCeEEE
Q 002994 529 KLRQRAKVHHTATHLLQAALKKV-IGQETSQAGSLVAFDRLRFDFNFHRPLLDTE----LEEIERLINGWIGDANLLQTK 603 (860)
Q Consensus 529 ~rR~~~m~~HTa~HLL~aAl~~~-lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~----l~~IE~~vNe~I~~n~pV~~~ 603 (860)
+||+.+|++|||+|||++||+++ +|.++.+.|+++ +++.++||. ..++.++ +.+||++||++|++++||++.
T Consensus 77 ~rR~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~ 153 (223)
T PLN02961 77 SRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAA 153 (223)
T ss_pred HHHhhhhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEE
Confidence 99999999999999999999997 776666778876 457788875 4577655 479999999999999999999
Q ss_pred EcCHHHHHHhchhh--hcCCCCCCcEEEEEECCcccccccccccccccccccEEEEeeecccCCeEEEEEE
Q 002994 604 VMALDDAKRAGAIA--MFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAV 672 (860)
Q Consensus 604 ~~~~eeA~~~~~~~--l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v 672 (860)
+++++||+++.... .+.++ .+.||||+|+|++.++||||||.||++||.|+|++.+ +++|.+||+|.
T Consensus 154 ~~~~~ea~~~~~~~~~~~~~~-~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~~~ 222 (223)
T PLN02961 154 VLPYDEAAELCGGSLPDYIAK-DSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVSYT 222 (223)
T ss_pred EeCHHHHHHhcCCcCCCcCCC-CCceEEEEECCCccCccCCcccCchhccccEEEEEEE-ecCCEEEEEEe
Confidence 99999998863322 22222 5679999999999999999999999999999999986 45889999984
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=373.09 Aligned_cols=362 Identities=21% Similarity=0.309 Sum_probs=288.0
Q ss_pred eEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEeEEEeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHH
Q 002994 455 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRA 534 (860)
Q Consensus 455 ~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~ 534 (860)
.+.+.|.+|++||||||||+|.|++. .+.|..|.+. |...-|++. .++.||..|.+.|||+||+++
T Consensus 43 g~~i~lqdtiLfpegggqp~d~gf~~----------~v~V~~VsR~-G~~A~H~~~---~~iePGt~V~V~VD~qkR~D~ 108 (415)
T KOG2105|consen 43 GYEIELQDTILFPEGGGQPSDSGFLK----------IVEVSHVSRF-GLHAKHHVN---DYIEPGTTVEVAVDEQKRMDY 108 (415)
T ss_pred cceeeeeeeEeccCCCCCCCcccccc----------ceeEEEeecc-ccchhhccC---CCCCCCCeEEEEecHHHHhHH
Confidence 47899999999999999999999996 4678999887 566778776 459999999999999999999
Q ss_pred HHHhhHHHHHHHHHHhHhCCceeeccccccCCcEE--EecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHH--H
Q 002994 535 KVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLR--FDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDD--A 610 (860)
Q Consensus 535 m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r--~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~ee--A 610 (860)
||+||++|||+|++.+.|...+. ...++ +++ +..+. .++|.|++..||+.+|+.|...+|+.+.+.+.++ .
T Consensus 109 MQQHsGQHLitAvad~~fKlkTt--SWelG--~~~sa~e~~~-~~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~eV 183 (415)
T KOG2105|consen 109 MQQHSGQHLITAVADHLFKLKTT--SWELG--RFRSAIELDT-PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEV 183 (415)
T ss_pred HHHhcchhHHHHHHHhhhcccee--eeecc--ceeeccccCC-CCccHHHHHHHHHHHHHHHHhccchheeecccCCcch
Confidence 99999999999999999876543 12222 232 23333 3699999999999999999999999999887654 2
Q ss_pred HHhchhhhcCCCCCCcEEEEEECCcccccccccccccccccccEEEEeeecccCCeEEEEEEecHHHHHHHHHHHHHHHH
Q 002994 611 KRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKH 690 (860)
Q Consensus 611 ~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v~G~~A~~~~~~~~~~l~~ 690 (860)
.+...+.++ +...+.+|+|.|+|+|.++||||||+||++|+.|+|++.++-.+|..-..|+.|.|.+.|....+.+++.
T Consensus 184 eqVS~~~~~-D~haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~~mersh~t~~a 262 (415)
T KOG2105|consen 184 EQVSGRGLP-DDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKA 262 (415)
T ss_pred hhccCCCCc-ccccCceEEEeecCccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHHHHHHhcchHHH
Confidence 222222222 2335789999999999999999999999999999999998877886677888899999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCCeEEEEEEecCCCHHHHHHHHHHH
Q 002994 691 LCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYL 770 (860)
Q Consensus 691 l~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~la~~l 770 (860)
+..+|+|..+++.++|.++++..+.|+|....+.+.||...+.+|.... .. +|+ ++.++. ..+.++++.+++.+
T Consensus 263 ~taLLkCgaed~vEavkk~qnstk~LqKnn~~~lr~LA~~iahsL~Ns~-d~---gG~-vi~~~~-e~~sE~~N~ianei 336 (415)
T KOG2105|consen 263 LTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSP-DW---GGV-VILHRK-EGDSEFMNIIANEI 336 (415)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCc-Cc---Cce-EEeehh-hccHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999987543 34 554 333344 44788877777654
Q ss_pred HHhcCCCeEEEEEee-cCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHH
Q 002994 771 VDTLQDPAAVVLGSC-PDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARA 849 (860)
Q Consensus 771 ~~~~~~~~vv~l~s~-~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQGgg~~~~~l~~al~~~~~ 849 (860)
++.-.+++... ...+...|+++.++. +...+...+++.+.|||||+....||.....+.-.++.+++.+
T Consensus 337 ----~s~EtlL~~~~~dek~GgLflLa~~~a------svetLg~rvae~LeG~Ga~K~Gr~QGKaTkmSrrmea~AlLqD 406 (415)
T KOG2105|consen 337 ----GSEETLLFLTVGDEKGGGLFLLAGPPA------SVETLGPRVAEVLEGKGAGKKGRFQGKATKMSRRMEAQALLQD 406 (415)
T ss_pred ----CCeeEEEEEEeeccCCceEEEecCCch------hhhhhhHHHHHHhhcCCCCcCcccccchhhhhHHHHHHHHHHH
Confidence 32113333332 223334566665554 3345677899999999999999999998877776777777777
Q ss_pred HHH
Q 002994 850 DLV 852 (860)
Q Consensus 850 ~l~ 852 (860)
++.
T Consensus 407 YiS 409 (415)
T KOG2105|consen 407 YIS 409 (415)
T ss_pred Hhh
Confidence 774
No 14
>PLN02837 threonine-tRNA ligase
Probab=99.83 E-value=3.9e-20 Score=220.38 Aligned_cols=175 Identities=21% Similarity=0.354 Sum_probs=140.8
Q ss_pred CEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 002994 520 REVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANL 599 (860)
Q Consensus 520 ~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~p 599 (860)
.+|.+.+|...|...+.+||++|||++|++++||......|++++ +++||||+. .++|++++.+||++||++|.+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~-~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~p 107 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIE-NGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLP 107 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccC-CCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999999999999999999999999875556677764 689999987 589999999999999999999999
Q ss_pred eEEEEcCHHHHHHhchh-------hhcCCCCCCcEEEEEECCccccccccccccccccc--ccEEEEeeecccCCeEEEE
Q 002994 600 LQTKVMALDDAKRAGAI-------AMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEI--RAFKIISEQGIASGIRRIE 670 (860)
Q Consensus 600 V~~~~~~~eeA~~~~~~-------~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeI--g~fkI~~~~~~~~G~~RI~ 670 (860)
|+..+++++||.+.+.. .++.....+.||||+|+|.+.++|+||||+|||+| +.| ||+
T Consensus 108 I~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~-------------kl~ 174 (614)
T PLN02837 108 LVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGEEWWDLCAGPHVERTGKINKKAV-------------ELE 174 (614)
T ss_pred EEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECCeEEEecCCCCcccccccccceE-------------EEE
Confidence 99999999999886321 12222224569999999755678999999999999 444 555
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHH
Q 002994 671 AVAGEAFIEYINARDSYMKHLCSTLKVK---DEEVTTRVEGLLEDLR 714 (860)
Q Consensus 671 ~v~G~~A~~~~~~~~~~l~~l~~~l~~~---~~~l~~~v~~l~~e~k 714 (860)
.+|| .||+...+. .++++++|+. .++|.+.++.+++..+
T Consensus 175 ~~~g----~ywrg~~~~-~~l~ri~g~~~~~~~~l~~~~~~~~e~~~ 216 (614)
T PLN02837 175 SVAG----AYWRGDEKN-QMLQRIYGTAWESEEQLKAYLHFKEEAKR 216 (614)
T ss_pred Eeeh----hhhcccccC-cceEEEEEEecCCHHHHHHHHHHHHHhhh
Confidence 5555 678777766 6788888874 5677777666655443
No 15
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.78 E-value=2.1e-18 Score=205.24 Aligned_cols=141 Identities=24% Similarity=0.402 Sum_probs=118.2
Q ss_pred HHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHh
Q 002994 534 AKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRA 613 (860)
Q Consensus 534 ~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~ 613 (860)
.+.+|||+|||++|++++||......|+ ..++++||||+...++|++++.+||+.||++|++|+||+...++++||.++
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~~~~~~~~-~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPDAKLGIGP-PIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEeCC-CcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 4689999999999999999864434444 457899999998778999999999999999999999999999999999986
Q ss_pred ch-----hhhcCCCCCCcEEEEEECCcccccccccccccccccccEEEEeeec-------ccCCeEEEEEEecHH
Q 002994 614 GA-----IAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQG-------IASGIRRIEAVAGEA 676 (860)
Q Consensus 614 ~~-----~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~-------~~~G~~RI~~v~G~~ 676 (860)
+. ..++.....+.||||+|+++. ++|+||||+|||+||.|+|++.++ .+++++||++++=..
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig~~~-d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~ 159 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNGDFE-DLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWET 159 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEECCEE-EECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEecCC
Confidence 43 123333344579999999853 689999999999999999999844 378999999987655
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.75 E-value=2e-17 Score=199.19 Aligned_cols=162 Identities=23% Similarity=0.362 Sum_probs=132.2
Q ss_pred ccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 002994 515 VLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWI 594 (860)
Q Consensus 515 ~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I 594 (860)
.+..+..|+..-....+-..+.+||++|||++|++++||......|++ .++++||||+...++|++++.+||++||++|
T Consensus 50 ~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~~~-~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~iI 128 (638)
T PRK00413 50 PIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPV-IENGFYYDFDRERPFTPEDLEAIEKEMKEII 128 (638)
T ss_pred cccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEECCc-cCCeEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 355667788777777778888999999999999999998543344444 4679999999877899999999999999999
Q ss_pred hcCCCeEEEEcCHHHHHHhch-------hhhcCCCCC-CcEEEEEECCcccccccccccccccccccEEEEeeec-----
Q 002994 595 GDANLLQTKVMALDDAKRAGA-------IAMFGEKYG-EQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQG----- 661 (860)
Q Consensus 595 ~~n~pV~~~~~~~eeA~~~~~-------~~l~~eky~-~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~----- 661 (860)
.+|+||+...++++||.+++. ..++..... +.||||+|+++ .++|+||||+|||+|+.|+|++.++
T Consensus 129 ~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~~-~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~ 207 (638)
T PRK00413 129 KENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEF-VDLCRGPHVPSTGKIKAFKLLKVAGAYWRG 207 (638)
T ss_pred hcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECCE-EEECCCCCCCcccCCceeEEEEEcceEEcC
Confidence 999999999999999998632 122222222 37999999985 4799999999999999999999854
Q ss_pred --ccCCeEEEEEEecHHHH
Q 002994 662 --IASGIRRIEAVAGEAFI 678 (860)
Q Consensus 662 --~~~G~~RI~~v~G~~A~ 678 (860)
.+++.+||+.++-....
T Consensus 208 ~~~~~~l~Ri~g~~~~~~~ 226 (638)
T PRK00413 208 DSKNKMLQRIYGTAFADKK 226 (638)
T ss_pred CCcchheEEEEeeecCCHH
Confidence 36889999998776643
No 17
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.71 E-value=1.9e-16 Score=190.41 Aligned_cols=142 Identities=19% Similarity=0.344 Sum_probs=118.6
Q ss_pred HHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHH
Q 002994 533 RAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKR 612 (860)
Q Consensus 533 ~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~ 612 (860)
....+||++|||++|++++||......|+.+ ++++||||+...++|++++.+||++||++|.+|+||+...++++||.+
T Consensus 72 ~~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~-~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~ 150 (639)
T PRK12444 72 VEIARHSAAHILAQAVKRLYGDVNLGVGPVI-ENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAK 150 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEeCCcC-CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence 3567999999999999999997545556665 679999999877899999999999999999999999999999999998
Q ss_pred hch-------hhhcCCCCC-CcEEEEEECCcccccccccccccccccccEEEEeeecc-------cCCeEEEEEEecHH
Q 002994 613 AGA-------IAMFGEKYG-EQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGI-------ASGIRRIEAVAGEA 676 (860)
Q Consensus 613 ~~~-------~~l~~eky~-~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~v~G~~ 676 (860)
++. ..++..... +.||||+|++ ..++|+||||+|||+|+.|+|++.++. ..+++||+.+|=..
T Consensus 151 ~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~-~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~~ 228 (639)
T PRK12444 151 LFQEMNDRLKLELLEAIPSGESITLYKQGE-FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSS 228 (639)
T ss_pred HHhhcCCchHHHHHhcCCCCCeEEEEEECC-EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEecCC
Confidence 632 123322222 4699999998 457899999999999999999988775 67899999987544
No 18
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.65 E-value=9.2e-16 Score=182.24 Aligned_cols=139 Identities=26% Similarity=0.368 Sum_probs=117.7
Q ss_pred HhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhch-
Q 002994 537 HHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGA- 615 (860)
Q Consensus 537 ~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~- 615 (860)
+||++|||++|+++++|....+.|+.+ ++++||||+...++|++++.+||+.||++|.+++||....++++||.+...
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 599999999999999987667788888 457999999877899999999999999999999999999999999998654
Q ss_pred -----hhhcCCC-CCCcEEEEEECCcccccccccccccccccccEEEEeeecc-------cCCeEEEEEEecHH
Q 002994 616 -----IAMFGEK-YGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGI-------ASGIRRIEAVAGEA 676 (860)
Q Consensus 616 -----~~l~~ek-y~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~v~G~~ 676 (860)
..++... +.+.|++|++++++.++|+||||+|||.|+.|+|++.+.- ..-+.||+.++=..
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~ 153 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWAD 153 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCC
Confidence 2234443 4577999999997789999999999999999999976552 24567888877444
No 19
>PLN02908 threonyl-tRNA synthetase
Probab=99.59 E-value=6.4e-15 Score=178.08 Aligned_cols=144 Identities=17% Similarity=0.297 Sum_probs=114.6
Q ss_pred hHHHHHhhHHHHHHHHHHhHhCCceeeccccccC-CcEEEecCCC-CCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHH
Q 002994 532 QRAKVHHTATHLLQAALKKVIGQETSQAGSLVAF-DRLRFDFNFH-RPLLDTELEEIERLINGWIGDANLLQTKVMALDD 609 (860)
Q Consensus 532 ~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~-d~~r~Df~~~-~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~ee 609 (860)
-.-+.+||++|||.+|++++||.++. .|.++++ +++||||... .++|++++..||++|+++|.+++||+...++++|
T Consensus 118 g~~~y~hS~ahlL~~A~~~~~~~~l~-ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~ee 196 (686)
T PLN02908 118 GRDTFWHSSAHILGEALELEYGCKLC-IGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREE 196 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeEE-ecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHH
Confidence 44678999999999999999986553 5777764 7899998743 5799999999999999999999999999999999
Q ss_pred HHHhch-----hhhcCCCC-CCcEEEEEECCcccccccccccccccccccEEEEeeecc-------cCCeEEEEEEecHH
Q 002994 610 AKRAGA-----IAMFGEKY-GEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGI-------ASGIRRIEAVAGEA 676 (860)
Q Consensus 610 A~~~~~-----~~l~~eky-~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~v~G~~ 676 (860)
|.+++. ..++.... .+.|+||+||++ .++|+||||+|||+|+.|+|++.++. .....||+.++=+.
T Consensus 197 A~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~-~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~ 275 (686)
T PLN02908 197 ALEMFSENKFKVEIINDLPEDATITVYRCGPL-VDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISFPD 275 (686)
T ss_pred HHHHHhhCCcHHHHHhhCCCCCeeEEEEECCE-EEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeeccCC
Confidence 998643 12332222 246999999983 56899999999999999999988752 23455777666554
Q ss_pred H
Q 002994 677 F 677 (860)
Q Consensus 677 A 677 (860)
.
T Consensus 276 ~ 276 (686)
T PLN02908 276 K 276 (686)
T ss_pred h
Confidence 3
No 20
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.41 E-value=2.2e-13 Score=106.75 Aligned_cols=44 Identities=50% Similarity=0.841 Sum_probs=38.8
Q ss_pred EEEEEECCcccccccccccccccccccEEEEeeecccCCeEEEE
Q 002994 627 VRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIE 670 (860)
Q Consensus 627 VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 670 (860)
||||+|+++|.++||||||+|||+|+.|+|++.++.++|++|||
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 79999999999999999999999999999999999999999996
No 21
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.7e-12 Score=149.15 Aligned_cols=154 Identities=21% Similarity=0.371 Sum_probs=123.2
Q ss_pred hHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHH
Q 002994 532 QRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAK 611 (860)
Q Consensus 532 ~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~ 611 (860)
..-.-+||++|||..|++++++. ...| .+-++++++||+...++|++++..||+.|++++.+++||....+++++|+
T Consensus 25 ~~~~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~ 101 (589)
T COG0441 25 GLEIIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEAR 101 (589)
T ss_pred chhhhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHH
Confidence 33457899999999999999997 3456 44578999999998889999999999999999999999999999999999
Q ss_pred Hhch---hhhcCCCCCCcEEEEEECCcccccccccccccccccccEEEEeeecccCCeEEEEEEecHHHHHHHHHHHHHH
Q 002994 612 RAGA---IAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYM 688 (860)
Q Consensus 612 ~~~~---~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v~G~~A~~~~~~~~~~l 688 (860)
+.+. ..+..++ +..+.+++-+. ..++|-|+||+|||.| .|++++.++ +||+.....
T Consensus 102 ~~f~~yK~~~i~~~-~~~~s~y~~~~-~~dlc~gph~~~t~~i-~fkl~~~~~-----------------ayw~g~~~~- 160 (589)
T COG0441 102 APFGPYKAELIDCK-GHPLSEYSQGE-FVDLCRGPHVPSTGKI-AFKLLKLAG-----------------AYWRGDENN- 160 (589)
T ss_pred HHhhhhHHHHHhcC-CCCceeEecCc-cccccCCCCCCccceE-EEEEEEecc-----------------hhhccCCCC-
Confidence 8654 1122222 36788998876 6789999999999999 999998876 677776666
Q ss_pred HHHHHHhCCC---hhHHHHHHHHH
Q 002994 689 KHLCSTLKVK---DEEVTTRVEGL 709 (860)
Q Consensus 689 ~~l~~~l~~~---~~~l~~~v~~l 709 (860)
.++++++|+. ..++...+..+
T Consensus 161 ~~l~riygta~~~~~~l~~~l~~~ 184 (589)
T COG0441 161 EMLQRIYGTAFADKKELEAYLKRL 184 (589)
T ss_pred cceeEEeccccCCHHHHHHHHhhh
Confidence 6778888875 34444444433
No 22
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.13 E-value=3.9e-11 Score=93.95 Aligned_cols=44 Identities=57% Similarity=0.853 Sum_probs=41.3
Q ss_pred EEEEEECCcccccccccccccccccccEEEEeeecccCCeEEEE
Q 002994 627 VRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIE 670 (860)
Q Consensus 627 VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 670 (860)
||+|.|+++|.++||||||+||++||.|+|++.++...+.+||+
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 69999999999999999999999999999999999888888884
No 23
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=98.22 E-value=2.2e-06 Score=73.12 Aligned_cols=65 Identities=31% Similarity=0.498 Sum_probs=54.4
Q ss_pred EEEEEeecCCCcEEEEEEeccchhcccccHH-HHHHHHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHH
Q 002994 779 AVVLGSCPDEGKVSLIAAFSQGIVDLGIQAG-KFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARA 849 (860)
Q Consensus 779 vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~-~l~k~~~~~~gGkGGG~~~~AQGgg~~~~~l~~al~~~~~ 849 (860)
++++++ ..++++.+.+.++++ ++.. +|++++++.++|+|||++.+|||+++++.+++++++.+.+
T Consensus 3 ~~i~~~-~~~~~~~~s~rs~~~-----~~~~~~~~~~~~~~~~G~GGGh~~aAg~~~~~~~~l~~~~~~~~e 68 (68)
T PF02272_consen 3 PVIVFS-EEDGKIKVSARSSKG-----VDDKGEILKELAEKLGGKGGGHPDAAGGSIPKPEKLEEFLKALEE 68 (68)
T ss_dssp EEEEEE-EESSTEEEEEEESSS-----STHH-HHHHHCHHHGTCEEEEESSEEEEEESCGGHHHHHHHHHHH
T ss_pred EEEEEE-EcCCEEEEEEEECCc-----hhhHHHHHHHHHHHcCCCCCCCHHHhcccCCCchhHHHHHHHhcC
Confidence 555656 678888888886664 4555 9999999999999999999999999998889999888764
No 24
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0019 Score=72.96 Aligned_cols=69 Identities=25% Similarity=0.498 Sum_probs=54.2
Q ss_pred HHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhc
Q 002994 535 KVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAG 614 (860)
Q Consensus 535 m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~ 614 (860)
..+||++|+|..|+.+.+|.+.+ .|..+ ++++++|. + ..++.+++..||.
T Consensus 68 vfwhssahvlg~a~e~~~g~~lc-~Gpp~-~~gf~yd~-~-~~i~~~d~~~~e~-------------------------- 117 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAHLC-IGPPI-EEGFYYDM-L-DEISSNDFPSIEA-------------------------- 117 (560)
T ss_pred eeeehhhhHhhHHHHHhcCeeEe-eCCCC-cCceehhh-h-ccccccccccccc--------------------------
Confidence 47999999999999999998876 47765 46888887 4 3344444444433
Q ss_pred hhhhcCCCCCCcEEEEEECCcccccccccccccccccccEEEEeeec
Q 002994 615 AIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQG 661 (860)
Q Consensus 615 ~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~ 661 (860)
+||++||.|+.|+|++.++
T Consensus 118 ----------------------------phi~~tg~ika~k~~~nss 136 (560)
T KOG1637|consen 118 ----------------------------PHIRHTGKIKAFKILKNSS 136 (560)
T ss_pred ----------------------------ccccccceeeeeeeeccch
Confidence 9999999999999998776
No 25
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=95.88 E-value=0.0062 Score=72.51 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=56.1
Q ss_pred cccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCccccccc
Q 002994 562 LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCG 641 (860)
Q Consensus 562 ~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~~eky~~~VRVV~Igg~d~e~Cg 641 (860)
.+++-.+|+|...+..+|.++..+ +..-| |.....++ .+ +|+.+|. -+.+|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~-----------------~~--~~~~~~~-~~~~~~ 81 (545)
T PRK14799 30 GLGERDFYIDVKSDTSITLDEVKK-------AINEN-VLANVSIE-----------------NN--QIVYKGN-KVSIIE 81 (545)
T ss_pred cccceeEEEecCCCccccHHHHHH-------HHhcC-cceeeEee-----------------cC--cEEEccC-ceeecC
Confidence 356778999998777777665433 33333 33332221 12 2334665 567999
Q ss_pred c-cccccccccccEEEEeeeccc----CCeEEEEEEecH
Q 002994 642 G-THVNNTAEIRAFKIISEQGIA----SGIRRIEAVAGE 675 (860)
Q Consensus 642 G-THV~nTgeIg~fkI~~~~~~~----~G~~RI~~v~G~ 675 (860)
| |||+|||.|+.|+|++.++.+ .-..||+.++=.
T Consensus 82 ~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~ 120 (545)
T PRK14799 82 DKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFE 120 (545)
T ss_pred CCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecC
Confidence 9 999999999999999998742 335566666543
No 26
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=93.99 E-value=0.011 Score=70.59 Aligned_cols=92 Identities=22% Similarity=0.146 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeec---ccccccCC
Q 002994 90 AFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVF---MQYNKKDD 166 (860)
Q Consensus 90 ~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF---~q~~~~~~ 166 (860)
|++.-.+.+|+|++||.- ....|. |.||+|-|.++ ...|.-+++| |+|....+
T Consensus 106 awe~lt~~l~i~~~~l~v---t~~~~d----~ea~~~w~~~~-----------------g~~~~~i~~~~~~~nfw~~g~ 161 (552)
T PF01411_consen 106 AWEFLTEVLGIPPDRLYV---TVFEWD----GEAGEIWEKIV-----------------GGPEERILVFGKKDNFWEMGD 161 (552)
T ss_dssp HHHHHHCTTT--GGGEEE---EEECCE----CCCCCCCCECC-----------------TTECCCEEEE-CCEEEEESST
T ss_pred HHHHHHhhcCCChHhEEE---EEeCCc----hhHHHHHHHhc-----------------CCCHHHeEecCCCCceEECCC
Confidence 445566778999999963 344443 58999999776 2367888999 99997655
Q ss_pred CccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHH
Q 002994 167 GSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIK 207 (860)
Q Consensus 167 g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~ 207 (860)
+ ....|..-||+|+|+||..|..++.++.|+. .|..|.+
T Consensus 162 ~-gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~-~~~eiwn 200 (552)
T PF01411_consen 162 T-GPCGPCSEIFYDRGEERGCWDSQGTPTCDDD-RFLEIWN 200 (552)
T ss_dssp S-EEEEEEEEEEEEEECCCHHHHHHSTSSHHHH-HECCCCC
T ss_pred C-CCCCCCEEEEECCCcccCccccccccccccc-cHHHHHH
Confidence 3 6889999999999999999999999997765 5555443
No 27
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=93.32 E-value=0.16 Score=52.10 Aligned_cols=121 Identities=25% Similarity=0.280 Sum_probs=75.7
Q ss_pred CccccccccCCCCccccCCCCCcccccccccCcccCccc-----HHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHH
Q 002994 18 RAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYF-----KKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFE 92 (860)
Q Consensus 18 r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfgdYf-----K~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~ 92 (860)
|+...++|.|..+- .-+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++.+-.++
T Consensus 77 ~lfeig~vfr~e~~-~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~~~~~~----------- 141 (211)
T cd00768 77 RLAEIGPAFRNEGG-RRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKLDIVFV----------- 141 (211)
T ss_pred EEEEEcceeecCCC-ccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCcceEEE-----------
Confidence 67888999988542 111 3677899999999998654 3678888888885 66763221111
Q ss_pred HHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccc---------
Q 002994 93 IWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNK--------- 163 (860)
Q Consensus 93 iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~--------- 163 (860)
. .....||. +.+|+|.+|+++... .|..||+++-...-+.
T Consensus 142 --------------~-~~~~~~~~----~~~g~~~~i~~~~~~------------~~~~eig~~g~~~~~~~~~~~l~~~ 190 (211)
T cd00768 142 --------------E-KTPGEFSP----GGAGPGFEIEVDHPE------------GRGLEIGSGGYRQDEQARAADLYFL 190 (211)
T ss_pred --------------e-cCchhhcc----ccCCceEEEEEEccC------------CCeEEEeeceeecCchhHhhhhhee
Confidence 0 11223442 468999999997432 2456777665443322
Q ss_pred cCCCccccCccCcccccchHHHH
Q 002994 164 KDDGSLEPLKQKNIDTGLGLERI 186 (860)
Q Consensus 164 ~~~g~~~~L~~~~iDtG~GlER~ 186 (860)
+.+++. ..| .+|=.|+|+||+
T Consensus 191 ~~~~~~-~~p-~~~~~~~~~~R~ 211 (211)
T cd00768 191 DEALEY-RYP-PTIGFGLGLERL 211 (211)
T ss_pred cccccc-cCc-eeecCccCccCC
Confidence 233433 345 666777999995
No 28
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=92.13 E-value=2.9 Score=50.19 Aligned_cols=96 Identities=27% Similarity=0.244 Sum_probs=60.9
Q ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCccccee
Q 002994 752 VESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQ 831 (860)
Q Consensus 752 ~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQ 831 (860)
+..-++.....+-.+|..+.++...+ ++++.. .++.. +.+|--.. .++++.++++++...++++|||-+. |=
T Consensus 328 v~~~~~~~~Gv~GivA~rl~~~~~kP-~ivls~--~~~~~---~kgS~Rs~-~g~nl~~~l~~~~~~~l~~~GGH~~-Aa 399 (539)
T TIGR00644 328 VVAGENWHPGVLGIVASRLAETFNKP-VIVLAI--DEGKG---AKGSARSI-SGIDLYDLLSELREALFLKFGGHAM-AA 399 (539)
T ss_pred EEEeCCCCCchHHHHHHHHHHHHCCC-EEEEEE--cCCce---EEEeeccC-CCCcHHHHHHHHHHhhccccCChHH-cC
Confidence 33445566667888898998888765 555543 33321 11121111 3699999999988867889988753 32
Q ss_pred eccCCcccHHHHHHHHHHHHHHhh
Q 002994 832 AGGRKPENLSIALEKARADLVSVL 855 (860)
Q Consensus 832 Ggg~~~~~l~~al~~~~~~l~~~L 855 (860)
|-.-..+.++++.+.+.+.+.+.+
T Consensus 400 G~~i~~~~~~~f~~~l~~~~~~~~ 423 (539)
T TIGR00644 400 GLTLKRENLEEFREKLEEKFKKIL 423 (539)
T ss_pred eeEEcHHHHHHHHHHHHHHHHhhc
Confidence 222356788888888877775543
No 29
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=83.91 E-value=2.3 Score=45.46 Aligned_cols=78 Identities=32% Similarity=0.477 Sum_probs=49.3
Q ss_pred cCCC-CCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCc
Q 002994 98 VGVP-VEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 176 (860)
Q Consensus 98 ~g~~-~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~~~~g~~~~L~~~~ 176 (860)
+||+ .+|=+||- +|| |+-=.-|.-|-==|+--| .+||=-.- =|. ...| .++..-.
T Consensus 102 lGid~~~hDIRFV-EDn-WEsPTLGAwGlGWEVWld-----------------GMEITQFT--YFQ-QvGG--i~~~pv~ 157 (283)
T PRK09348 102 LGIDPLEHDIRFV-EDN-WESPTLGAWGLGWEVWLD-----------------GMEVTQFT--YFQ-QVGG--IECKPVT 157 (283)
T ss_pred hCCCccccceeEe-ecC-CCCCcccccccceEEEEC-----------------Ceeeeeee--eee-eeCC--eeccccc
Confidence 4553 23456664 455 652222666666676654 26775332 222 2344 3566667
Q ss_pred ccccchHHHHHHHHhCCCCCccc
Q 002994 177 IDTGLGLERIARILQKVPNNYET 199 (860)
Q Consensus 177 iDtG~GlER~~~ilq~~~s~ydt 199 (860)
+.-=+||||||+.|||+.|+||.
T Consensus 158 ~EITYGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 158 GEITYGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred eeeehhHHHHHHHHhCCCceeee
Confidence 78889999999999999999997
No 30
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=82.74 E-value=2.7 Score=44.89 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=49.5
Q ss_pred cCCC-CCcccccCCCCCcccCCCC-CCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccC
Q 002994 98 VGVP-VEHIKRMGADDNFWNSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK 175 (860)
Q Consensus 98 ~g~~-~~~I~~~~~~dnfW~~G~~-GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~~~~g~~~~L~~~ 175 (860)
+||+ .+|=+||- +|| |+ -|| |.-|-==|+--| .+||=-. +=|. ...| .++..-
T Consensus 98 lGid~~~hDIRFV-EDn-WE-sPTLGAwGLGWEVWld-----------------GMEITQF--TYFQ-QvGG--i~~~pv 152 (279)
T cd00733 98 LGINPKEHDIRFV-EDN-WE-SPTLGAWGLGWEVWLD-----------------GMEVTQF--TYFQ-QVGG--IPCKPI 152 (279)
T ss_pred hCCCccccCeeEe-ecC-CC-CCcccccccccEEEEC-----------------Ceeeeee--eeee-eeCC--eecccc
Confidence 4553 33456664 455 65 233 666766676654 2777533 2222 2344 256666
Q ss_pred cccccchHHHHHHHHhCCCCCccc
Q 002994 176 NIDTGLGLERIARILQKVPNNYET 199 (860)
Q Consensus 176 ~iDtG~GlER~~~ilq~~~s~ydt 199 (860)
.+.-=+||||||+.|||+.|+||.
T Consensus 153 ~~EiTYGLERiamylQ~vd~v~dl 176 (279)
T cd00733 153 SVEITYGLERIAMYLQGVDNVYDI 176 (279)
T ss_pred ceeeehhHHHHHHHHhCCCceecc
Confidence 777889999999999999999997
No 31
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=81.93 E-value=0.72 Score=49.39 Aligned_cols=79 Identities=33% Similarity=0.527 Sum_probs=44.5
Q ss_pred hcCCC-CCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccC
Q 002994 97 EVGVP-VEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK 175 (860)
Q Consensus 97 ~~g~~-~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~~~~g~~~~L~~~ 175 (860)
.+||+ .+|=+||- +|| |+-=.-|.-|-==|+--| .+||=-.-+ |.+ ..| .++..-
T Consensus 96 ~lGId~~~hDIRFV-EDn-WEsPtLGAwGlGWEVWld-----------------GMEITQfTY--FQQ-vGG--i~~~pv 151 (284)
T PF02091_consen 96 ALGIDPKEHDIRFV-EDN-WESPTLGAWGLGWEVWLD-----------------GMEITQFTY--FQQ-VGG--IDCKPV 151 (284)
T ss_dssp HCT--CCCS-EEEE-EE--EEETTTTEEEEEEEEEET-----------------TCEEEEEEE--EEE-ETT--EE-SS-
T ss_pred HhCCCccccceeEe-ecC-CCCCcccccccccEEEEC-----------------CEEEEEeee--eee-eCC--cccccc
Confidence 35663 34556664 455 642112555555566553 267653332 222 334 356667
Q ss_pred cccccchHHHHHHHHhCCCCCccc
Q 002994 176 NIDTGLGLERIARILQKVPNNYET 199 (860)
Q Consensus 176 ~iDtG~GlER~~~ilq~~~s~ydt 199 (860)
.+.-=+||||||+.+||+.++||.
T Consensus 152 ~~EITYGLERiamylQ~vdnv~dl 175 (284)
T PF02091_consen 152 SVEITYGLERIAMYLQGVDNVYDL 175 (284)
T ss_dssp -EEEEEEHHHHHHHHCT-SSGGGS
T ss_pred ceehhhhHHHHHHHHhCCCeeEee
Confidence 788889999999999999999997
No 32
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=79.98 E-value=3.6 Score=44.23 Aligned_cols=77 Identities=32% Similarity=0.547 Sum_probs=48.1
Q ss_pred cCCC-CCcccccCCCCCcccCCCC-CCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccC
Q 002994 98 VGVP-VEHIKRMGADDNFWNSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK 175 (860)
Q Consensus 98 ~g~~-~~~I~~~~~~dnfW~~G~~-GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~~~~g~~~~L~~~ 175 (860)
+|++ .+|=+||- +|| |+ -|| |.-|-==|+--| .+||=-. +=|.+ ..| + ++..-
T Consensus 99 lGid~~~hDIRFV-EDn-WE-sPTLGAwGlGWEVWld-----------------GMEITQF--TYFQQ-vGG-i-~~~pv 153 (293)
T TIGR00388 99 LGIDPTEHDIRFV-EDN-WE-NPTLGAWGLGWEVWLD-----------------GMEVTQF--TYFQQ-VGG-L-ECKPV 153 (293)
T ss_pred hCCCccccCeeEe-ecC-CC-CCcccccccccEEEEC-----------------Ceeeeee--eeeee-eCC-e-ecccc
Confidence 4552 33445664 455 65 233 666666676654 2677532 22332 344 2 45555
Q ss_pred cccccchHHHHHHHHhCCCCCccc
Q 002994 176 NIDTGLGLERIARILQKVPNNYET 199 (860)
Q Consensus 176 ~iDtG~GlER~~~ilq~~~s~ydt 199 (860)
.+.-=+||||||+.|||+.|+||.
T Consensus 154 ~~EITYGLERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 154 SVEITYGLERLAMYIQGVENVYDL 177 (293)
T ss_pred ceeeehhHHHHHHHHhCCCeeeee
Confidence 677789999999999999999997
No 33
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=79.59 E-value=2.2 Score=47.97 Aligned_cols=41 Identities=29% Similarity=0.580 Sum_probs=27.8
Q ss_pred CCCCceEEEeeeecccccccCCCcccc--CccCcccc--------cchHHHHHHHHhCCCC
Q 002994 145 GDDTRFIEFYNLVFMQYNKKDDGSLEP--LKQKNIDT--------GLGLERIARILQKVPN 195 (860)
Q Consensus 145 ~~~~r~lEiwNlVF~q~~~~~~g~~~~--L~~~~iDt--------G~GlER~~~ilq~~~s 195 (860)
|.+..||||-. -|.+.| |..-.||. |||+||||++.-|.+.
T Consensus 274 ck~~~WiEilG----------~Gmv~p~vl~~~gid~~~~~G~AfG~GleRlaMl~ygi~D 324 (339)
T PRK00488 274 CKGTGWLEILG----------CGMVHPNVLRNVGIDPEEYSGFAFGMGIERLAMLKYGIDD 324 (339)
T ss_pred cCCCCceEEec----------cCccCHHHHHHcCCCcccceEEEEeecHHHHHHHHhCCcH
Confidence 44567999873 333322 44445554 9999999999988764
No 34
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=78.38 E-value=3.8 Score=43.52 Aligned_cols=79 Identities=30% Similarity=0.488 Sum_probs=50.3
Q ss_pred hcCCC-CCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccC
Q 002994 97 EVGVP-VEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK 175 (860)
Q Consensus 97 ~~g~~-~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~~~~g~~~~L~~~ 175 (860)
.+|++ ..|=+||- +|| |+-=.-|.-|-==|+.-| .+||=-. +=|. ...| + ++..-
T Consensus 102 ~lGid~~~HDIRFV-EDn-WE~PTlGawGlGWEVWld-----------------GMEvTQF--TYFQ-QvGG-i-ec~pV 157 (298)
T COG0752 102 ALGIDPLEHDIRFV-EDN-WENPTLGAWGLGWEVWLD-----------------GMEVTQF--TYFQ-QVGG-L-ECKPV 157 (298)
T ss_pred HcCCChhhcceeee-ccC-CCCCcccccccceeEEEc-----------------Ceeeeee--ehhh-hhCC-e-eccce
Confidence 46774 34667774 444 663223777766777664 2666433 2222 2344 3 34445
Q ss_pred cccccchHHHHHHHHhCCCCCccc
Q 002994 176 NIDTGLGLERIARILQKVPNNYET 199 (860)
Q Consensus 176 ~iDtG~GlER~~~ilq~~~s~ydt 199 (860)
.+.-=+||||||+.+||+.++||.
T Consensus 158 ~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 158 SGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred eeeeehhHHHHHHHHhCccceeEE
Confidence 566679999999999999999996
No 35
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=73.51 E-value=4.8 Score=46.26 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=55.6
Q ss_pred cccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-ccCCc---cccccceeee----hhhhhHHHh---hhcC
Q 002994 176 NIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVS-YAQSN---DRTNLNLKII----GDHLRAIVY---LLSD 244 (860)
Q Consensus 176 ~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~-y~~~~---~~~~~~~r~i----aDH~R~~~~---~i~d 244 (860)
.|+||-||=-+-++-.|..+.|-..+|+|+.+...+++.++ +++.- .+..+.+.++ ||-+-+-.| +|..
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtElige 151 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGE 151 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhcc
Confidence 58999999999999999999999999999999999987653 22110 0223345566 565555555 7899
Q ss_pred CCccC
Q 002994 245 GVFPS 249 (860)
Q Consensus 245 G~~Ps 249 (860)
|++||
T Consensus 152 Galps 156 (636)
T KOG1501|consen 152 GALPS 156 (636)
T ss_pred ccchh
Confidence 99998
No 36
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=72.08 E-value=4.2 Score=38.68 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=21.1
Q ss_pred HHHHHHhhhcccCCCCCceEEEEeC
Q 002994 61 IQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 61 i~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
-.-.-++|+++||||++|+||+++.
T Consensus 78 s~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 78 TPRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred HHHHHHHHHHHcCCCcccEEEEEEc
Confidence 3455688999999999999999984
No 37
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=71.52 E-value=8.9 Score=48.87 Aligned_cols=72 Identities=29% Similarity=0.498 Sum_probs=46.2
Q ss_pred cccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchH
Q 002994 104 HIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGL 183 (860)
Q Consensus 104 ~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~~~~g~~~~L~~~~iDtG~Gl 183 (860)
|=+||- +|| |+-=.-|.-|-==|+.-| .+||=-.-| |. ...| .++..-.+.-=+||
T Consensus 110 ~dirfv-ed~-we~p~lga~glgwevw~~-----------------gmeitqfty--fq-q~gg--~~~~~~~~eitygl 165 (1000)
T PRK14908 110 HDIRFV-HDD-WENPTIGAWGLGWEVWLD-----------------GMEITQFTY--FQ-QAGG--KPLDPISGEITYGI 165 (1000)
T ss_pred cceeEe-ecC-CCCCcccccccccEEEEC-----------------Ceeeeeeee--eh-hcCC--eeccccceeeeccH
Confidence 345663 455 542222666666666653 267753322 22 2344 35666778888999
Q ss_pred HHHHHHHhCCCCCccc
Q 002994 184 ERIARILQKVPNNYET 199 (860)
Q Consensus 184 ER~~~ilq~~~s~ydt 199 (860)
|||++.|||+.+.||.
T Consensus 166 er~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 166 ERIAMYLQKVNHFKDI 181 (1000)
T ss_pred HHHHHHHhCCCeeeee
Confidence 9999999999999986
No 38
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.49 E-value=2.7 Score=27.62 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.5
Q ss_pred CCCCCCceE
Q 002994 120 TGPCGPCSE 128 (860)
Q Consensus 120 ~GpcGpcsE 128 (860)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 499999974
No 39
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=59.10 E-value=11 Score=35.69 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.8
Q ss_pred HHHHHhhhcccCCCCCceEEEEeCCh
Q 002994 62 QWAWEFSTVEFGLPANRLWISVYEDD 87 (860)
Q Consensus 62 ~~awe~lt~~l~l~~~~l~vt~~~~D 87 (860)
.--.|||.++|+|||+|+|+++|.-+
T Consensus 78 a~l~~il~~~L~l~~~rv~I~f~dl~ 103 (115)
T KOG1759|consen 78 AALTEILEKELSLDPDRVYIKFYDLN 103 (115)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 34468999999999999999998643
No 40
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=58.97 E-value=10 Score=35.85 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
|++-.+---++|.+.||+||+|+||.++.
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55666667788999999999999998865
No 41
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=56.76 E-value=38 Score=34.81 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=52.4
Q ss_pred cccccccccccccccccccEEEEeeecccCCeEE----------EEEEecHHHHHHHHHHHHHHHHHHHHhCCChhHHHH
Q 002994 635 VSMELCGGTHVNNTAEIRAFKIISEQGIASGIRR----------IEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTT 704 (860)
Q Consensus 635 ~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~R----------I~~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~l~~ 704 (860)
.+.++-+.-|..|.|.+..+ +..++|..||.= =.+.|.....+..++....+.+..+.+......-.+
T Consensus 69 TsAC~~~~FyC~N~g~~p~~--i~~s~VnDGICDy~~CCDGSDE~~~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~ 146 (176)
T PF12999_consen 69 TSACSNGKFYCENKGHIPRY--IPSSRVNDGICDYDICCDGSDESGGKCPNTCAELGKEYREELEEEEEIYKEGLKIRQE 146 (176)
T ss_pred cccCcCceEeeccCCCCCce--eehhhhcCCcCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456688888888754 566778888754 123455555555444444444444444333222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 705 RVEGLLEDLRTARNEVANLRAKAAVYK 731 (860)
Q Consensus 705 ~v~~l~~e~k~l~k~~~~l~~~l~~~~ 731 (860)
.++.-++..+++++++.+|++++...+
T Consensus 147 ~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 147 LIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555666667777776665543
No 42
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=56.15 E-value=12 Score=42.05 Aligned_cols=59 Identities=24% Similarity=0.390 Sum_probs=32.7
Q ss_pred CceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccc-cCCCccccCccCcccccchHHHHHHHHhCCCC
Q 002994 125 PCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNK-KDDGSLEPLKQKNIDTGLGLERIARILQKVPN 195 (860)
Q Consensus 125 pcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~-~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s 195 (860)
|+-|+++... .|..||||.+-=-..=|- .+-| +.|-+-...==|||+||||++.-|.+.
T Consensus 262 PS~Evdv~~~-----------~~~~WlEi~G~Gmv~P~VL~~~G-~~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 262 PSAEVDVYCP-----------GCGGWLEILGCGMVHPNVLEAVG-IDPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred CeEEEEEEEc-----------CCCCEEEEecccccCHHHHHhcC-CCCCcceEEEEeecHHHHHHHHhCCcH
Confidence 5778776421 124799998642111110 0111 112222222569999999999988764
No 43
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=55.36 E-value=3.9e+02 Score=32.67 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=56.2
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHH----HcCCCCCC
Q 002994 750 VLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAK----LCGGGGGG 825 (860)
Q Consensus 750 ~~~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~----~~gGkGGG 825 (860)
+++..-++.....+--+|..|.++...+ ++++.. ..++. +..|.--+ .|+++.+.++.+.. .+ -+.||
T Consensus 355 ~ivv~~~~wh~GViGIVAsrl~e~y~rP-~ivls~-~~~g~----~kGS~RSi-~g~~l~~aL~~~~~~~~~ll-~~fGG 426 (575)
T PRK11070 355 GLAMYHPEWHQGVVGILASRIKERFHRP-VIAFAP-AGDGT----LKGSGRSI-QGLHMRDALERLDTLYPGLI-LKFGG 426 (575)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHCCC-EEEEEE-cCCCe----EEEEEeCC-CCCcHHHHHHHhhhcccchh-hccCC
Confidence 3444456777778889999999998875 566543 23332 11121111 26888888877542 33 34555
Q ss_pred cccceeeccC-CcccHHHHHHHHHHHHHHhh
Q 002994 826 RPNFAQAGGR-KPENLSIALEKARADLVSVL 855 (860)
Q Consensus 826 ~~~~AQGgg~-~~~~l~~al~~~~~~l~~~L 855 (860)
-+ +| +|.+ ..++++++.+.+.+.+.+.+
T Consensus 427 H~-~A-aG~ti~~e~l~~f~~~l~~~~~~~~ 455 (575)
T PRK11070 427 HA-MA-AGLSLEEDKFELFQQRFGELVTEWL 455 (575)
T ss_pred hH-Hh-CcceeCHHHHHHHHHHHHHHHHHhc
Confidence 42 23 2333 66788887777777665443
No 44
>smart00438 ZnF_NFX Repressor of transcription.
Probab=46.70 E-value=8.4 Score=27.04 Aligned_cols=11 Identities=45% Similarity=1.331 Sum_probs=8.8
Q ss_pred CCCCCCceEEE
Q 002994 120 TGPCGPCSEIY 130 (860)
Q Consensus 120 ~GpcGpcsEi~ 130 (860)
+|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999654
No 45
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=45.37 E-value=19 Score=42.79 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=36.3
Q ss_pred CceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccc-cCCCccccCccCcccccchHHHHHHHHhCCCC
Q 002994 125 PCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNK-KDDGSLEPLKQKNIDTGLGLERIARILQKVPN 195 (860)
Q Consensus 125 pcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~-~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s 195 (860)
|..||+.... .+.+||||.|.=..+=+- .+-| + |=+..++==||||||+|++.-|.+.
T Consensus 425 PS~Ev~v~~~-----------~~gkWIEIgg~Gm~rpevL~~~G-i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 425 PSMEIFGYHP-----------GLKKWVEVGNSGIFRPEMLRPMG-F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred CeeEEEEEec-----------CCCcEEEEeCcCccCHHHHHhcC-C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 5788886432 124699999875544111 1223 1 1122367779999999999988754
No 46
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=44.28 E-value=18 Score=34.10 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=17.4
Q ss_pred HHHHhhhcccCCCCCceEEEEeC
Q 002994 63 WAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 63 ~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
---+||.++||+|++|+||.++.
T Consensus 78 ~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 78 AITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHhCCCcCceEEEEEE
Confidence 34578999999999999998864
No 47
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=40.88 E-value=14 Score=39.95 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.8
Q ss_pred CcccccchHHHHHHHHhCCCCC
Q 002994 175 KNIDTGLGLERIARILQKVPNN 196 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ 196 (860)
.++=-||||||||++..|.+..
T Consensus 212 ~~~A~G~GleRlam~~~gi~di 233 (247)
T PF01409_consen 212 PGFAFGLGLERLAMLKYGIPDI 233 (247)
T ss_dssp EEEEEEEEHHHHHHHHHT-SSG
T ss_pred eEEEecCCHHHHHHHHcCCchH
Confidence 5566799999999999998754
No 48
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=39.96 E-value=39 Score=38.43 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=49.3
Q ss_pred hcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCc
Q 002994 97 EVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 176 (860)
Q Consensus 97 ~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~~~~g~~~~L~~~~ 176 (860)
++|+..=+-.+=-++..|+- | |.-||+|-- .|....+ ...-++.|+||.. |--|.-..=-.| -+|.++
T Consensus 258 qfGFe~F~FrpDEK~SKYYv--P----~TQTEVyAy-HPkL~gs--~~kysdgWiEiAT--FGlYSP~ALaeY-~Id~pV 325 (536)
T COG2024 258 QFGFEKFRFRPDEKKSKYYV--P----GTQTEVYAY-HPKLVGS--IEKYSDGWIEIAT--FGLYSPIALAEY-GIDYPV 325 (536)
T ss_pred HhCccceeeccccccccccC--C----CccceEEEe-ccccccc--ccccCCCcEEEEe--ecccChHHHHHc-CCCCce
Confidence 45665434333223344552 1 557998853 3332211 1145678999995 333332111111 256667
Q ss_pred ccccchHHHHHHHHhCCCCC
Q 002994 177 IDTGLGLERIARILQKVPNN 196 (860)
Q Consensus 177 iDtG~GlER~~~ilq~~~s~ 196 (860)
.--|.|.||||+||.|.+.+
T Consensus 326 MNLGlGVERlaMIl~g~~DV 345 (536)
T COG2024 326 MNLGLGVERLAMILHGADDV 345 (536)
T ss_pred eecchhHHHHHHHHhCchHH
Confidence 77899999999999987543
No 49
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=37.86 E-value=3.2e+02 Score=25.10 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=27.4
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHHHhcC------CCeEEEEEeecCCCcEEEEE
Q 002994 746 NEIRVLVESMDDMDADSLKSAAEYLVDTLQ------DPAAVVLGSCPDEGKVSLIA 795 (860)
Q Consensus 746 ~~~~~~~~~~~~~d~~~L~~la~~l~~~~~------~~~vv~l~s~~~~~k~~~v~ 795 (860)
.+..+++..++..+...++..|..+.+..+ +..++++.+ ..+.++.+.+
T Consensus 21 t~~~i~Vvtv~~~~~~~~~~~A~~~~~~~~~g~~~~~~gvlilv~-~~~r~~~i~~ 75 (119)
T PF04536_consen 21 TGVQIVVVTVPSLPGQDIEDYAQQLFERWGLGDGECNNGVLILVS-KDDRKVRIET 75 (119)
T ss_dssp C--EEEEEEESB-TTS-HHHHHHHHHHHHSTTCCCTSSEEEEEEE-TTTTEEEEEE
T ss_pred hCCEEEEEEEcCCCCCCHHHHHHHHHHHhCCCCccccCcEEEEEE-cCCCEEEEEE
Confidence 345666666666655667777777766621 224777776 6666655543
No 50
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=36.82 E-value=11 Score=41.55 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=51.0
Q ss_pred ccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCC
Q 002994 41 HTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGA 119 (860)
Q Consensus 41 ~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l-~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~ 119 (860)
-.+|.|.|...|-.|. +...+...++| +..|+.++.+ |+-.+.......+.+.+.+|+|++++.. .+..
T Consensus 207 ~~~~~~~~~~~~~~~~-~~~~~~i~~~l-~~~g~~~~di~~~~~h~~~~~~~~~~~~~lgl~~~~~~~--------~~~~ 276 (320)
T cd00830 207 DPYLVMDGREVFKFAV-RLMPESIEEAL-EKAGLTPDDIDWFVPHQANLRIIEAVAKRLGLPEEKVVV--------NLDR 276 (320)
T ss_pred CccEEEcChHHHHHHH-HhhHHHHHHHH-HHcCCCHHHCCEEEECCCCHHHHHHHHHHhCCCHHHhhh--------hHHh
Confidence 3466677766553322 22223333444 3579998887 6666777888888899999999998842 2345
Q ss_pred CCCCCCce
Q 002994 120 TGPCGPCS 127 (860)
Q Consensus 120 ~GpcGpcs 127 (860)
.|.||+|+
T Consensus 277 ~Gn~~sas 284 (320)
T cd00830 277 YGNTSAAS 284 (320)
T ss_pred hCcHHHHH
Confidence 68999887
No 51
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=35.43 E-value=3.4e+02 Score=34.69 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHH
Q 002994 762 SLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLS 841 (860)
Q Consensus 762 ~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQGgg~~~~~l~ 841 (860)
.+..+++.+.+-.+-. +.+++....++++.+. +.|.+ .++++.++ +.+| |||-...|=+..++ ..++
T Consensus 602 ~~a~~ad~Ll~I~gv~-asfV~~e~~d~~i~IS-aRS~g----~inVq~Ia----e~~G--GGGH~~AAGaqi~~-~tle 668 (838)
T PRK14538 602 FLAQVAESVLNIQNVD-AAFMIAKISDNTIAIS-ARSYN----EINVQTIM----EQME--GGGHLNSAATQIKG-TNIK 668 (838)
T ss_pred hHHHHHHHHhcccCee-EEEEEEEEcCCEEEEE-EEeCC----CCCHHHHH----HHhC--CCccHhhheEEeCC-CCHH
Confidence 3567778777654433 3334431334444443 44432 37776654 4565 56776664444332 2366
Q ss_pred HHHHHHHHHHH
Q 002994 842 IALEKARADLV 852 (860)
Q Consensus 842 ~al~~~~~~l~ 852 (860)
++++.+.+.++
T Consensus 669 e~~~~L~~~I~ 679 (838)
T PRK14538 669 TVTQTLKHLLK 679 (838)
T ss_pred HHHHHHHHHHH
Confidence 66666666663
No 52
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=34.26 E-value=34 Score=40.53 Aligned_cols=44 Identities=32% Similarity=0.291 Sum_probs=27.8
Q ss_pred ceEEEeeee-cccccccCCCccccCccC--cccccchHHHHHHHHhCCCCC
Q 002994 149 RFIEFYNLV-FMQYNKKDDGSLEPLKQK--NIDTGLGLERIARILQKVPNN 196 (860)
Q Consensus 149 r~lEiwNlV-F~q~~~~~~g~~~~L~~~--~iDtG~GlER~~~ilq~~~s~ 196 (860)
.||||.|-= |-.---.+-| +|.+ ++=-||||||+|++.-|.+..
T Consensus 423 kWiEi~g~Gm~rpevl~~~G----i~~~~~~~A~GlGleRlaMl~ygi~DI 469 (492)
T PLN02853 423 KWVEVGNSGMFRPEMLLPMG----LPEDVNVIAWGLSLERPTMILYGIDNI 469 (492)
T ss_pred CEEEEecCcCcCHHHHHhCC----CCCcceEEEEEecHHHHHHHHhCCcHH
Confidence 599998742 1111111223 1333 678899999999999887643
No 53
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=30.94 E-value=27 Score=38.39 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=25.0
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLIF 203 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f~ 203 (860)
+|=-.|||+|||++++-|.+|.=|+-+|.
T Consensus 248 P~~G~giGidRL~m~~~g~~~Irdv~~FP 276 (280)
T cd00777 248 PHGGIALGLDRLVMLLTGSESIRDVIAFP 276 (280)
T ss_pred CCCeEeEhHHHHHHHHcCCCchheEeecC
Confidence 77788999999999999999988775553
No 54
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=30.61 E-value=1.3e+02 Score=33.77 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 676 AFIEYINARDSYMKHLCSTLKVKD----EEVTTRVEGLLEDLRTARNEVANLRA 725 (860)
Q Consensus 676 ~A~~~~~~~~~~l~~l~~~l~~~~----~~l~~~v~~l~~e~k~l~k~~~~l~~ 725 (860)
...++-+...+.+....+.|+.|. +++.++|..|+.+++.|+|++..|++
T Consensus 264 a~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 264 ALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334565666677778888999873 56666666666666666666665543
No 55
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.38 E-value=2.2e+02 Score=34.43 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q 002994 677 FIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRT 715 (860)
Q Consensus 677 A~~~~~~~~~~l~~l~~~l~~~~~~l~~~v~~l~~e~k~ 715 (860)
.++.+......+..+++.++++++++++..+++++++..
T Consensus 298 ~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~ 336 (557)
T COG0497 298 RLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQ 336 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 456777777788899999999998888888877776443
No 56
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.57 E-value=29 Score=39.56 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=17.2
Q ss_pred cCcccccchHHHHHHHHhCCCC
Q 002994 174 QKNIDTGLGLERIARILQKVPN 195 (860)
Q Consensus 174 ~~~iDtG~GlER~~~ilq~~~s 195 (860)
.-..=-||||||||++|=+-|.
T Consensus 294 ~igwafglgLerLAMll~~IpD 315 (436)
T KOG2783|consen 294 YIGWAFGLGLERLAMLLFDIPD 315 (436)
T ss_pred eeeeeeeccHHHHHHHHhcCcc
Confidence 3445569999999999977763
No 57
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=27.49 E-value=48 Score=33.88 Aligned_cols=33 Identities=33% Similarity=0.591 Sum_probs=29.3
Q ss_pred hcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 002994 242 LSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKG 275 (860)
Q Consensus 242 i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~~~ 275 (860)
|.-+|.||-.|+|| -.-+||=|+..++.||++.
T Consensus 101 IGY~VrPseR~KGY-A~emLkl~L~~ar~lgi~~ 133 (174)
T COG3981 101 IGYSVRPSERRKGY-AKEMLKLALEKARELGIKK 133 (174)
T ss_pred ccceeChhhhccCH-HHHHHHHHHHHHHHcCCCe
Confidence 46678999999999 5889999999999999985
No 58
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=26.97 E-value=77 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeCC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYED 86 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~~ 86 (860)
|++-++-..+.|.+.||.|++.++|.+.+-
T Consensus 17 K~~l~~~it~~l~~~lg~~~~~v~V~i~e~ 46 (63)
T TIGR00013 17 KRQLIEGVTEAMAETLGANLESIVVIIDEM 46 (63)
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEEc
Confidence 666677777888889999999999988653
No 59
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=26.47 E-value=35 Score=37.99 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=34.7
Q ss_pred CCCccccccccCCCCccccCCCCCcccccccccCc-ccCcccHHHHHHHHHHhhhccc
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFSTVEF 72 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~-sfgdYfK~eai~~awe~lt~~l 72 (860)
..|+=..-||.|+-.. +.||.+=|-||=-. +|.|| ++.++..=+++...+
T Consensus 73 ~~rVfeigp~FRaE~~-----~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~ 123 (304)
T TIGR00462 73 SGPIFQICKVFRNGER-----GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELL 123 (304)
T ss_pred CCCEEEEcCceeCCCC-----CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHH
Confidence 5677788899999664 36999999998442 55565 556666666665444
No 60
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=26.14 E-value=37 Score=38.09 Aligned_cols=28 Identities=36% Similarity=0.357 Sum_probs=24.2
Q ss_pred CcccccchHHHHHHHHhCCCCCcccccc
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLI 202 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f 202 (860)
++=-.|||+|||++++-|.++.=|+-+|
T Consensus 290 p~~G~giGidRL~m~~~g~~~Irdv~~F 317 (322)
T cd00776 290 PHGGFGLGLERLVMWLLGLDNIREAILF 317 (322)
T ss_pred CCceeeEhHHHHHHHHcCCCchheEeec
Confidence 6777899999999999999998777555
No 61
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=25.39 E-value=2.6e+02 Score=25.32 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCC
Q 002994 760 ADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGG 821 (860)
Q Consensus 760 ~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gG 821 (860)
.-.+|.++..|++|..++.|+++ ..+++..+-+. +.. .--+++|.+++++.+|+
T Consensus 22 GivvR~iap~l~dK~~DPaVvvv---de~g~~vIplL-~GH----~GGan~lA~~iA~~lga 75 (84)
T PF11760_consen 22 GIVVRAIAPLLKDKDTDPAVVVV---DEDGRFVIPLL-GGH----RGGANELARQIAELLGA 75 (84)
T ss_dssp HHHHHHHHHH---TTT--EEEEE----TT--EEEEEE--TT----TT-HHHHHHHHHHHTT-
T ss_pred HHHHHHhChhhcccCCCCCEEEE---eCCCCEEEEec-cCC----cchHHHHHHHHHHHhCC
Confidence 45789999999998766533333 35566544333 221 13478899999999874
No 62
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=25.06 E-value=38 Score=37.05 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=24.2
Q ss_pred CcccccchHHHHHHHHhCCCCCcccccc
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLI 202 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f 202 (860)
+|--.|+|+|||++++-|.++.=|+-+|
T Consensus 237 p~~G~glGieRL~m~~~g~~~Irdv~~F 264 (269)
T cd00669 237 PHGGLGIGIDRLIMLMTNSPTIREVIAF 264 (269)
T ss_pred CCceEeeHHHHHHHHHhCCCcHHHcccC
Confidence 6888999999999999999988776554
No 63
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.03 E-value=3.5e+02 Score=23.69 Aligned_cols=53 Identities=13% Similarity=0.299 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHH---HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 679 EYINARDSYMKHLC---STLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYK 731 (860)
Q Consensus 679 ~~~~~~~~~l~~l~---~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~ 731 (860)
+-+......+.+|. ..|+...-.+...|.+|....+++.+.+..+..++....
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554 556666677778888888888888888888877766543
No 64
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=24.46 E-value=3.9e+02 Score=29.48 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=37.3
Q ss_pred EEEEEEecCCCHHHHHHHHHHHHHh--c----CCCeEEEEEeecCCCcEEEEEEeccc-hhcccccHHHHHHHHH
Q 002994 749 RVLVESMDDMDADSLKSAAEYLVDT--L----QDPAAVVLGSCPDEGKVSLIAAFSQG-IVDLGIQAGKFIGPIA 816 (860)
Q Consensus 749 ~~~~~~~~~~d~~~L~~la~~l~~~--~----~~~~vv~l~s~~~~~k~~~v~~~s~~-~~~~~~~a~~l~k~~~ 816 (860)
.+++..++....+.+...+..+.++ + .++.+++|.. ..+.+..+.++-.-+ .. -..+++.++++..
T Consensus 65 QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa-~~dr~~rIevGyGLEg~l-tD~~a~~iIr~~i 137 (271)
T COG1512 65 QIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVA-MNDRRVRIEVGYGLEGVL-TDAQAGRIIRETI 137 (271)
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEE-cCCCeEEEEEecCccccc-ChHHHHHHHHhhh
Confidence 3444445554455666677776665 2 2223777766 666688777764422 11 1357777777643
No 65
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=23.59 E-value=4.8e+02 Score=31.72 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=54.1
Q ss_pred ceeeehhhhhHHHhhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhcc
Q 002994 227 NLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTH 299 (860)
Q Consensus 227 ~~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~ 299 (860)
++=.|||-+=+++=+.+=|..|+.+.==|=|||---=-+|.....+++-+ |.+|+...++.+..
T Consensus 445 ~ilsiADKlDtl~g~F~ig~~PtGskDPfaLRRaa~GIirIi~e~~~~l~---------L~~li~~a~~~~~~ 508 (548)
T PF02092_consen 445 AILSIADKLDTLVGFFGIGEIPTGSKDPFALRRAALGIIRIIIEKKLDLD---------LKELIEKALELYPK 508 (548)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHHhhh
Confidence 56678999999999999999999999999999887777777777777776 78888888887764
No 66
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=23.28 E-value=30 Score=40.81 Aligned_cols=31 Identities=23% Similarity=0.610 Sum_probs=25.0
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccHHHH
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLIFPII 206 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~ 206 (860)
+.=-.|||.+||+++|.|.+|.=|+ ++.|.+
T Consensus 468 PTgG~GiGIDRLvMllT~~~sIRdV-ilFP~m 498 (502)
T COG1190 468 PTGGLGIGIDRLVMLLTNSPSIRDV-ILFPAM 498 (502)
T ss_pred CCCCccccHHHHHHHHcCCCchhhe-eccccc
Confidence 3445799999999999999999998 555544
No 67
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=23.27 E-value=38 Score=37.33 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=38.9
Q ss_pred cccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEee
Q 002994 70 VEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYD 132 (860)
Q Consensus 70 ~~l~l~~~~l-~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d 132 (860)
+..|++++.+ |+=.+....-..+-|.+.+|+|++|+. |.+...|.||.|+ +++.
T Consensus 230 ~~~g~~~~di~~~~~h~~~~~~~~~~~~~lgi~~~k~~--------~~~~~~Gn~~sas-~~~~ 284 (318)
T TIGR00747 230 EANGLDPEDIDWFVPHQANLRIIEALAKRLELDMSQVV--------KTVHKYGNTSAAS-IPLA 284 (318)
T ss_pred HHcCCCHHHCCEEEECCCCHHHHHHHHHHcCCCHHHee--------ehHhhhCCHHHHH-HHHH
Confidence 4579988776 333456677788888889999999983 4456678999776 4443
No 68
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.10 E-value=2.9e+02 Score=24.74 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=30.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 688 MKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKA 727 (860)
Q Consensus 688 l~~l~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l 727 (860)
+..+.+.++.+.+++...+ .|.++...+++++..|++++
T Consensus 50 i~~L~~d~g~~l~~i~~~l-~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 50 IQRLTQELGVNLAGVKRIL-ELEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3556666899988887766 48888888999888887764
No 69
>PLN02850 aspartate-tRNA ligase
Probab=22.88 E-value=43 Score=40.30 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.1
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLIF 203 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f~ 203 (860)
+|=-.|+|||||++++-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 56678999999999999999988886664
No 70
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=22.88 E-value=46 Score=37.33 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=23.3
Q ss_pred CccCcccccchHHHHHHHHhCCCCCccccccH
Q 002994 172 LKQKNIDTGLGLERIARILQKVPNNYETDLIF 203 (860)
Q Consensus 172 L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~ 203 (860)
+| ++==.|+|+|||++++-|.++.=|+-+|.
T Consensus 301 ~p-p~~G~glG~eRLvm~l~g~~~Irdv~~FP 331 (335)
T PF00152_consen 301 MP-PHGGFGLGLERLVMLLLGLKNIRDVIPFP 331 (335)
T ss_dssp ---SEEEEEEEHHHHHHHHHT-SSGGGGSSS-
T ss_pred Cc-ccCcceehHHHHHHHHcCCCcHHheecCC
Confidence 44 66678999999999999999988775553
No 71
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=22.48 E-value=45 Score=39.35 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.3
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLIF 203 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f~ 203 (860)
++=--|||+|||++.+-|.++.=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 56667999999999999999887775554
No 72
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=22.36 E-value=91 Score=25.97 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
.|+.-++-.-+-+.+.||+|++.++|.+-+
T Consensus 16 qk~~l~~~it~~l~~~lg~p~~~v~V~i~e 45 (64)
T PRK01964 16 KIKNLIREVTEAISATLDVPKERVRVIVNE 45 (64)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 467777777788888999999999997754
No 73
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=22.13 E-value=47 Score=38.89 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCCccccccccCCCCccccCCCCCcccccccccCc-ccCcccHHHHHHHHHHhh
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFS 68 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~-sfgdYfK~eai~~awe~l 68 (860)
..|+=..-+|.|+-+ .+ |.||.+=|-||--. +|.|| ++.++.+=+++
T Consensus 199 ~~rVf~i~~~FR~E~---~~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li 246 (428)
T TIGR00458 199 FERVYEIGPIFRAEE---HN-THRHLNEATSIDIEMAFEDH--HDVMDILEELV 246 (428)
T ss_pred cCcEEEEecccccCC---CC-CccchheeeEeeeeeccCCH--HHHHHHHHHHH
Confidence 467778889999854 33 67999999998654 77787 56665555444
No 74
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.68 E-value=3e+02 Score=26.16 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q 002994 687 YMKHLCSTLKVKDEEVTTRVEGL 709 (860)
Q Consensus 687 ~l~~l~~~l~~~~~~l~~~v~~l 709 (860)
.+.++++.+++++..|..-+.++
T Consensus 31 sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 31 TVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 45677777777766665555544
No 75
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=21.46 E-value=49 Score=40.21 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCCccccccccCCCCccccCCCCCcccccccccC-cccCccc-----HHHHHHHHHHhhh
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYF-----KKEAIQWAWEFST 69 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn-~sfgdYf-----K~eai~~awe~lt 69 (860)
..|+-...+|.|+-|. +|.||++=|-||=- .+|.||. -++-|.+.|..+.
T Consensus 343 ~~rVf~i~p~FRaE~s----~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl 398 (586)
T PTZ00425 343 MGDVYTFGPTFRAENS----HTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVL 398 (586)
T ss_pred cCCEEEEeceEeCCCC----CCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHh
Confidence 6888899999999665 47899977777644 4788864 2444666666544
No 76
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=21.45 E-value=47 Score=37.39 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=31.9
Q ss_pred CCCccccccccCCCCccccCCCCCcccccccccC-cccCcccHHHHHHHHHHhhh
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFST 69 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn-~sfgdYfK~eai~~awe~lt 69 (860)
..|+=...+|.|+-+. + .||++=|-||=- .+|.+| ++.+..+=+++.
T Consensus 76 ~~~vf~i~~~FR~E~~---~--~rHl~EFt~le~e~~~~~~--~~~m~~~e~li~ 123 (329)
T cd00775 76 FERVYEIGRNFRNEGI---D--LTHNPEFTMIEFYEAYADY--NDMMDLTEDLFS 123 (329)
T ss_pred CCcEEEEeccccCCCC---C--CCCCCceEEEEEeeecCCH--HHHHHHHHHHHH
Confidence 4677788899998553 3 699999999854 466665 445555444443
No 77
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=21.35 E-value=7.4e+02 Score=27.89 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=80.8
Q ss_pred CccCcccccchHHHHHHHHhCCCCCccc------cccHHHHHHHHHHhCCCccCCcccccccee---eehhhhhHHHhhh
Q 002994 172 LKQKNIDTGLGLERIARILQKVPNNYET------DLIFPIIKKASELANVSYAQSNDRTNLNLK---IIGDHLRAIVYLL 242 (860)
Q Consensus 172 L~~~~iDtG~GlER~~~ilq~~~s~ydt------d~f~p~~~~i~~~~~~~y~~~~~~~~~~~r---~iaDH~R~~~~~i 242 (860)
.+-..+-++-+++|+..+...+...+.. .-|......+.+....--+. . ....+| ..-..+|+...-+
T Consensus 34 ~d~~~~~~~~~~~~l~~l~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~~p~-~--~a~~~~~d~~~f~~ir~~i~k~ 110 (335)
T PF11867_consen 34 FDYSKFFEASPFERLELLDDAVDHILSLEDEERRKRFLKLVKELSKAYALCLPD-P--EAEEYRDDIAFFQAIRAAIRKL 110 (335)
T ss_pred CChHHhcCCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777899998888777666642 23444444444432211111 0 001111 1234567776666
Q ss_pred cCCCc-cCCCCCchHHHHHHHHHHHHHHH------hCCCCCCCCCccccchHHHHHHHHHHhcc-CChhhHHhHHHHHHH
Q 002994 243 SDGVF-PSNIGRGYVVRRLIRRAVRTGRL------LGIKGDGRGNLEGAFLPSIAEKAIELSTH-IDSDVKAREQRILEE 314 (860)
Q Consensus 243 ~dG~~-Psn~grgyvlRrilRRa~~~~~~------lg~~~~~~~~~~~~~l~~lv~~v~~~~~~-~ypel~~~~~~i~~i 314 (860)
..+-- |+....+.-+|.||-.++..-.- .|.+.| =+.-|-+...+.+.. -+|.++. +.|...
T Consensus 111 ~~~~~~~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~--------disild~eFl~~v~~~~~k~~~~--e~L~~~ 180 (335)
T PF11867_consen 111 YSDDDGPDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKP--------DISILDDEFLEEVKKMKSKNLKA--ELLEKL 180 (335)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCC--------ChhhcCHHHHHHHHhccCchHHH--HHHHHH
Confidence 55555 88889999999999999975331 255555 234444444444433 2777654 568888
Q ss_pred HHHHHHHHHHH
Q 002994 315 LKREELRFVQT 325 (860)
Q Consensus 315 i~~Ee~~F~~t 325 (860)
|+.+.....+.
T Consensus 181 l~~~I~~~~~~ 191 (335)
T PF11867_consen 181 LRDEIKVRMKE 191 (335)
T ss_pred HHHHHHHHHhc
Confidence 88887765543
No 78
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=21.30 E-value=2.4e+02 Score=24.35 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=29.4
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhH
Q 002994 247 FPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVK 305 (860)
Q Consensus 247 ~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~ 305 (860)
.|...|. ||+ ..|+.+.+.||++.+ -...++..+.+.++.-++-++
T Consensus 2 a~pk~~~----~R~-daA~dam~~lG~~~~--------~v~~vl~~LL~lY~~nW~lIE 47 (65)
T PF10440_consen 2 APPKKGN----ERI-DAALDAMRQLGFSKK--------QVRPVLKNLLKLYDGNWELIE 47 (65)
T ss_pred CCCCcCc----HHH-HHHHHHHHHcCCCHH--------HHHHHHHHHHHHHcCCchhhh
Confidence 3555554 554 789999999999987 444555555555555454444
No 79
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=21.08 E-value=50 Score=38.92 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=24.7
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLIF 203 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f~ 203 (860)
++=-.|||+|||++.+-|.+|.=|+-+|.
T Consensus 414 P~gG~GiGidRL~m~l~g~~nIrdv~~FP 442 (450)
T PRK03932 414 PHSGFGLGFERLVAYITGLDNIRDVIPFP 442 (450)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 77788999999999999999987775554
No 80
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.06 E-value=2.5e+02 Score=26.75 Aligned_cols=43 Identities=16% Similarity=0.371 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 677 FIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAK 726 (860)
Q Consensus 677 A~~~~~~~~~~l~~l~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~ 726 (860)
+++|+-...+.+... ...+.+.+..+.++.+.++++++++.++
T Consensus 67 ~ieYLl~~q~~L~~~-------~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 67 SIEYLLHCQEYLSSQ-------LEQLEERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666555443332 3344444555555555555554444443
No 81
>PRK06462 asparagine synthetase A; Reviewed
Probab=21.02 E-value=52 Score=37.16 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=24.1
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLIF 203 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f~ 203 (860)
++=-.|||+|||++.+-|.++.=|+-+|.
T Consensus 299 p~~G~glGidRLvm~~~g~~~Irdv~~FP 327 (335)
T PRK06462 299 PSAGFGIGVERLTRYICGLRHIREVQPFP 327 (335)
T ss_pred CCCeEEEcHHHHHHHHcCCCchheeeecc
Confidence 66677999999999999999887775554
No 82
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.01 E-value=1.2e+02 Score=27.62 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=25.9
Q ss_pred cccccccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccC
Q 002994 426 LGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYA 467 (860)
Q Consensus 426 ~gY~~~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYp 467 (860)
+-|-.+...++|.+|.++ +++.+||+||.|.+|-
T Consensus 15 vrYvnTgTvgrV~dIkkd--------EdG~~WV~LdstdLwY 48 (97)
T COG4014 15 VRYVNTGTVGRVVDIKKD--------EDGDIWVVLDSTDLWY 48 (97)
T ss_pred EEEeecCceeeEEEEEee--------cCCceEEEEecCCcee
Confidence 457777788999999753 2346899999998764
No 83
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=20.97 E-value=51 Score=39.85 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=24.7
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLIF 203 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f~ 203 (860)
+|=-.|+|||||++++-|.++.=++-+|.
T Consensus 514 PhgG~GiGlERLvM~~lg~~nIR~v~lFP 542 (550)
T PTZ00401 514 PHGGFGVGLERVVMLYLGLSNVRLASLFP 542 (550)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeecCC
Confidence 56677999999999999999988876664
No 84
>PLN02532 asparagine-tRNA synthetase
Probab=20.93 E-value=52 Score=40.35 Aligned_cols=50 Identities=12% Similarity=0.243 Sum_probs=34.8
Q ss_pred CCCccccccccCCCCccccCCCCCcccccccccC-cccCcc-----cHHHHHHHHHHhhh
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDY-----FKKEAIQWAWEFST 69 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn-~sfgdY-----fK~eai~~awe~lt 69 (860)
+.|+=...+|.|+-..+ |.||++=|-||-- ++|.|| +=++-|.+....+.
T Consensus 389 l~rVYeIgP~FRAE~s~----T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~ 444 (633)
T PLN02532 389 LGNVYTFGPRFRADRID----SARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVL 444 (633)
T ss_pred cCceEEEccceecCCCC----CCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999993322 7899999999854 477775 23444555555443
No 85
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=20.60 E-value=60 Score=37.96 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=27.3
Q ss_pred ccCcccccchHHHHHHHHhCCCCCccccccHH
Q 002994 173 KQKNIDTGLGLERIARILQKVPNNYETDLIFP 204 (860)
Q Consensus 173 ~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p 204 (860)
+.+|---|+|||||++.+-|..+.=|+-+|..
T Consensus 397 ~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR 428 (435)
T COG0017 397 MPPHAGFGLGLERLVMYILGLDNIREAIPFPR 428 (435)
T ss_pred CCCCcccccCHHHHHHHHhCCCcceeccccCC
Confidence 44778889999999999999999988877654
No 86
>PLN02603 asparaginyl-tRNA synthetase
Probab=20.54 E-value=52 Score=39.86 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.6
Q ss_pred cCcccccchHHHHHHHHhCCCCCccccccH
Q 002994 174 QKNIDTGLGLERIARILQKVPNNYETDLIF 203 (860)
Q Consensus 174 ~~~iDtG~GlER~~~ilq~~~s~ydtd~f~ 203 (860)
.++---|||+|||++.+-|.+|.=|+-+|.
T Consensus 528 pPhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 528 VPHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred CCCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 367778999999999999999998886664
No 87
>cd06008 NF-X1-zinc-finger Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms.
Probab=20.52 E-value=40 Score=27.09 Aligned_cols=11 Identities=55% Similarity=1.374 Sum_probs=9.0
Q ss_pred CCCCCCceEEE
Q 002994 120 TGPCGPCSEIY 130 (860)
Q Consensus 120 ~GpcGpcsEi~ 130 (860)
+|||+||+++-
T Consensus 22 ~G~C~pC~~~~ 32 (49)
T cd06008 22 EGPCPPCPETV 32 (49)
T ss_pred CCcCcCcCCcc
Confidence 58999998754
No 88
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=20.29 E-value=53 Score=39.20 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCCccccccccCCCCccccCCCCCcccccccccC-cccCccc-----HHHHHHHHHHhh
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYF-----KKEAIQWAWEFS 68 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn-~sfgdYf-----K~eai~~awe~l 68 (860)
..|+=..-||.|+-++ +.||..=|-||-- ++|.||- -++-|..++.-+
T Consensus 240 ~~rVfeIg~~FRnE~~-----~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l 293 (496)
T TIGR00499 240 FEKVYEIGRNFRNEGV-----DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQEL 293 (496)
T ss_pred CCceEEEecceecCCC-----CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4566777889998554 3499999999976 5788872 344555555544
No 89
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.08 E-value=6.1e+02 Score=28.32 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhccceeecccCCeEEEEEEecCCCHHHHHHHHHHHHHh
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRAKAAV------YKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDT 773 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~------~~a~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~la~~l~~~ 773 (860)
+.+.+.+..|.+++.+++.+++.++.++.. ..+..++.. .. .+.++.+...++.+.++...+.+.|...
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv~g--~L---~g~~V~vV~~p~a~~~~~~~v~~~L~~A 109 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLVAG--RL---TGRSVAVVTLPGADDEDVDAVRELLEQA 109 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cc---CCCEEEEEEcCCCChHHHHHHHHHHHHC
Confidence 344455555666666666666555554433 223333322 12 6778888888887877777777777654
No 90
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=20.01 E-value=1.1e+02 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
|++-++-..+.+.+.+|.|++.++|.+.+
T Consensus 16 k~~l~~~i~~~l~~~~g~~~~~v~V~i~e 44 (58)
T cd00491 16 KRELIERVTEAVSEILGAPEATIVVIIDE 44 (58)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55566666777888899999999987753
Done!