Query 002994
Match_columns 860
No_of_seqs 356 out of 2106
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 3E-183 1E-187 1607.5 46.9 586 1-675 101-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 2E-170 6E-175 1499.1 42.7 572 1-675 101-738 (739)
3 1yfs_A Alanyl-tRNA synthetase; 100.0 1E-157 4E-162 1304.7 22.2 411 1-432 44-459 (465)
4 3hy0_A Alanyl-tRNA synthetase; 100.0 5E-155 2E-159 1276.3 26.6 382 1-403 43-439 (441)
5 3kew_A DHHA1 domain protein; s 100.0 1.7E-55 5.7E-60 464.6 20.6 228 424-680 4-234 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 7.1E-51 2.4E-55 423.0 17.8 207 422-672 4-214 (216)
7 1v4p_A Alanyl-tRNA synthetase; 99.9 3.5E-26 1.2E-30 226.0 16.3 143 533-675 4-152 (157)
8 1tke_A Threonyl-tRNA synthetas 99.9 7.2E-25 2.5E-29 229.0 17.1 164 502-673 41-222 (224)
9 2zvf_A Alanyl-tRNA synthetase; 99.9 2.5E-24 8.6E-29 215.5 20.3 170 673-855 1-170 (171)
10 1nyr_A Threonyl-tRNA synthetas 99.9 3.4E-23 1.2E-27 247.4 5.7 169 502-676 43-224 (645)
11 1qf6_A THRRS, threonyl-tRNA sy 99.8 1.2E-20 4E-25 224.9 18.8 165 502-673 41-222 (642)
12 3g98_A Alanyl-tRNA synthetase; 99.7 4.9E-17 1.7E-21 151.5 12.9 104 746-852 7-110 (111)
13 1j5w_A Glycyl-tRNA synthetase 84.1 0.36 1.2E-05 50.1 1.9 78 97-199 110-189 (298)
14 3rf1_A Glycyl-tRNA synthetase 83.0 0.42 1.4E-05 49.9 1.9 149 21-199 39-201 (311)
15 2zxr_A Single-stranded DNA spe 76.7 18 0.00063 42.9 13.3 90 752-855 333-422 (666)
16 1kd8_B GABH BLL, GCN4 acid bas 63.6 13 0.00045 26.8 4.8 30 700-729 4-33 (36)
17 4dh4_A MIF; trimer, isomerase; 63.4 3.7 0.00013 37.2 2.7 30 56-85 72-101 (114)
18 1kd8_A GABH AIV, GCN4 acid bas 61.7 15 0.00051 26.5 4.8 31 700-730 4-34 (36)
19 3fwu_A Macrophage migration in 57.6 6 0.0002 37.2 3.1 31 55-85 92-122 (133)
20 3b64_A Macrophage migration in 56.9 6.4 0.00022 35.4 3.1 32 54-85 70-101 (112)
21 2oxj_A Hybrid alpha/beta pepti 56.7 20 0.00069 25.5 4.7 27 700-726 4-30 (34)
22 3kan_A D-dopachrome tautomeras 55.4 6.1 0.00021 36.1 2.7 29 57-85 73-101 (117)
23 3djh_A Macrophage migration in 55.3 6.6 0.00023 35.6 2.9 30 56-85 71-100 (114)
24 2xcz_A Possible ATLS1-like lig 54.7 5.2 0.00018 36.1 2.0 30 56-85 72-101 (115)
25 3m48_A General control protein 53.2 18 0.00063 25.7 4.1 26 700-725 3-28 (33)
26 3t5s_A Gilaa.00834.A, macropha 52.7 6.7 0.00023 36.9 2.5 30 56-85 93-122 (135)
27 1hfo_A Migration inhibitory fa 52.3 8 0.00027 34.7 2.9 30 56-85 71-100 (113)
28 3fwt_A Macrophage migration in 52.2 7.3 0.00025 36.5 2.7 30 56-85 93-122 (133)
29 2wkb_A Macrophage migration in 51.9 8.5 0.00029 35.4 3.1 32 54-85 70-101 (125)
30 2os5_A Acemif; macrophage migr 51.9 6.1 0.00021 36.0 2.0 30 56-85 72-101 (119)
31 1uiz_A MIF, macrophage migrati 50.4 8.9 0.0003 34.5 2.9 30 56-85 72-101 (115)
32 3c3g_A Alpha/beta peptide with 49.6 31 0.0011 24.4 4.7 27 700-726 3-29 (33)
33 3c3f_A Alpha/beta peptide with 48.6 33 0.0011 24.4 4.7 27 700-726 4-30 (34)
34 2hy6_A General control protein 47.3 35 0.0012 24.3 4.7 27 700-726 4-30 (34)
35 2l5g_B Putative uncharacterize 46.5 52 0.0018 24.7 5.8 36 696-731 1-36 (42)
36 1uo4_A General control protein 46.4 32 0.0011 24.6 4.4 26 700-725 4-29 (34)
37 2opa_A Probable tautomerase YW 45.2 7.6 0.00026 30.5 1.4 30 56-85 15-44 (61)
38 1otf_A 4-oxalocrotonate tautom 44.8 7.2 0.00025 30.7 1.2 30 56-85 15-44 (62)
39 3abf_A 4-oxalocrotonate tautom 42.9 14 0.00047 29.2 2.6 29 57-85 17-45 (64)
40 1nnh_A Asparaginyl-tRNA synthe 41.9 10 0.00035 40.4 2.2 53 16-72 88-141 (294)
41 2wq1_A General control protein 41.3 50 0.0017 23.4 4.7 26 700-725 3-28 (33)
42 2bni_A General control protein 41.2 42 0.0014 24.0 4.4 26 700-725 4-29 (34)
43 1gyx_A YDCE, B1461, hypothetic 37.5 21 0.0007 29.7 3.0 50 56-105 16-66 (76)
44 2r2v_A GCN4 leucine zipper; co 37.2 62 0.0021 23.1 4.7 27 700-726 4-30 (34)
45 1eh2_A EPS15; calcium binding, 35.5 85 0.0029 27.8 7.0 46 351-396 29-78 (106)
46 2x4k_A 4-oxalocrotonate tautom 32.9 15 0.00053 28.6 1.4 29 57-85 19-47 (63)
47 3m20_A 4-oxalocrotonate tautom 32.4 37 0.0013 26.9 3.6 29 57-85 15-43 (62)
48 1apy_A Aspartylglucosaminidase 32.2 58 0.002 31.7 5.5 51 58-127 107-160 (162)
49 1c07_A Protein (epidermal grow 31.6 1.1E+02 0.0038 26.0 6.9 46 351-396 25-74 (95)
50 3fia_A Intersectin-1; EH 1 dom 31.1 86 0.0029 28.9 6.3 45 351-395 47-95 (121)
51 1mww_A Hypothetical protein HI 29.6 28 0.00094 31.9 2.7 30 56-85 74-103 (128)
52 2aal_A Malonate semialdehyde d 28.5 31 0.0011 31.7 2.9 30 56-85 80-109 (131)
53 3il3_A 3-oxoacyl-[acyl-carrier 28.3 23 0.0008 37.9 2.2 76 42-127 209-285 (323)
54 1qjt_A EH1, epidermal growth f 27.6 1E+02 0.0034 26.7 5.9 45 351-395 26-74 (99)
55 3mb2_A 4-oxalocrotonate tautom 27.2 35 0.0012 27.9 2.7 29 57-85 17-45 (72)
56 2yy0_A C-MYC-binding protein; 26.3 92 0.0032 24.5 4.7 29 704-732 19-47 (53)
57 1fi6_A EH domain protein REPS1 25.5 1.1E+02 0.0039 25.6 5.8 45 351-395 24-72 (92)
58 1iq3_A Ralbp1-interacting prot 25.5 98 0.0034 27.4 5.6 45 351-395 37-85 (110)
59 3a5y_A GENX, putative lysyl-tR 25.4 26 0.00088 38.2 1.9 51 16-73 109-160 (345)
60 4dzn_A Coiled-coil peptide CC- 24.8 1.3E+02 0.0045 20.6 4.5 25 706-730 4-28 (33)
61 3m21_A Probable tautomerase HP 24.4 39 0.0013 27.2 2.4 29 57-85 19-47 (67)
62 3h78_A PQS biosynthetic enzyme 24.2 22 0.00074 38.8 1.0 75 43-127 240-315 (359)
63 4gyx_A Type III collagen fragm 24.1 28 0.00097 23.5 1.2 10 118-127 19-28 (31)
64 2kpt_A Putative secreted prote 24.0 2.2E+02 0.0076 26.8 8.0 67 747-819 44-112 (148)
65 3dma_A Exopolyphosphatase-rela 23.8 1.4E+02 0.005 32.1 7.5 79 763-854 258-337 (343)
66 3twe_A Alpha4H; unknown functi 23.7 1.1E+02 0.0037 20.1 3.8 17 710-726 7-23 (27)
67 1hjb_A Ccaat/enhancer binding 23.4 1.7E+02 0.0057 25.5 6.3 51 679-730 15-69 (87)
68 2i7u_A Four-alpha-helix bundle 23.1 49 0.0017 25.6 2.5 16 810-825 17-32 (62)
69 2wuj_A Septum site-determining 22.9 59 0.002 25.9 3.1 34 696-729 19-52 (57)
70 3uh0_A Threonyl-tRNA synthetas 22.9 1.8E+02 0.0063 32.6 8.4 70 18-91 151-240 (460)
71 4dfe_A 3-oxoacyl-[acyl-carrier 22.9 25 0.00085 37.6 1.2 75 43-127 220-295 (333)
72 1wyd_A Hypothetical aspartyl-t 22.8 31 0.0011 38.7 2.0 30 172-202 391-420 (429)
73 3ry0_A Putative tautomerase; o 22.7 30 0.001 27.6 1.4 29 57-85 16-44 (65)
74 3nem_A Aspartyl-tRNA synthetas 22.4 32 0.0011 38.8 1.9 28 175-202 402-429 (438)
75 2wuj_A Septum site-determining 22.3 66 0.0023 25.6 3.3 28 700-727 30-57 (57)
76 1n9w_A Aspartyl-tRNA synthetas 21.8 33 0.0011 38.4 1.9 32 172-204 384-415 (422)
77 2w83_C C-JUN-amino-terminal ki 21.7 2.7E+02 0.0092 23.6 6.9 45 685-729 18-62 (77)
78 3m4p_A Ehasnrs, asparaginyl-tR 21.5 34 0.0012 38.7 2.0 28 175-202 420-447 (456)
79 3bju_A Lysyl-tRNA synthetase; 21.5 33 0.0011 39.5 1.9 49 16-69 244-298 (521)
80 3i7f_A Aspartyl-tRNA synthetas 21.0 35 0.0012 39.5 1.9 36 16-55 310-347 (548)
81 1t2k_D Cyclic-AMP-dependent tr 20.8 1.6E+02 0.0056 23.4 5.4 32 699-730 24-55 (61)
82 2xgt_A Asparaginyl-tRNA synthe 20.7 36 0.0012 38.2 2.0 28 175-202 399-426 (435)
83 1e1o_A Lysyl-tRNA synthetase, 20.7 35 0.0012 39.1 1.9 28 175-202 470-497 (504)
84 3a74_A Lysyl-tRNA synthetase; 20.6 35 0.0012 39.0 1.9 47 16-69 242-289 (493)
85 4ex5_A Lysine--tRNA ligase; st 20.6 36 0.0012 39.3 1.9 49 16-69 272-326 (529)
86 2cja_A Seryl-tRNA synthetase; 20.5 1.1E+02 0.0036 35.3 5.8 53 18-75 346-407 (522)
87 1x54_A Asparaginyl-tRNA synthe 20.4 36 0.0012 38.2 1.9 48 17-70 201-249 (434)
88 2wt7_A Proto-oncogene protein 20.2 1.7E+02 0.0059 23.5 5.4 31 699-729 25-55 (63)
89 2zc2_A DNAD-like replication p 20.1 67 0.0023 26.7 3.1 28 352-379 17-47 (78)
90 3ej9_A Alpha-subunit of trans- 20.1 49 0.0017 27.5 2.2 30 56-85 16-45 (76)
91 1evl_A Threonyl-tRNA synthetas 20.0 3.5E+02 0.012 29.4 9.8 62 18-82 113-180 (401)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=3.2e-183 Score=1607.49 Aligned_cols=586 Identities=30% Similarity=0.492 Sum_probs=540.7
Q ss_pred CCCCccccc-ccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccC-----cccHHHHHHHHHHhhhcccCC
Q 002994 1 MLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEFSTVEFGL 74 (860)
Q Consensus 1 M~qfk~~f~-g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfg-----dYfK~eai~~awe~lt~~l~l 74 (860)
||||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||+|||||||++|||
T Consensus 101 m~~fk~~f~~G~~~pp~~r~~~~QkCiR~~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl 180 (752)
T 2zze_A 101 IMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXM 180 (752)
T ss_dssp GGGGTTHHHHTSSCCSSSSEEEEEEEECCTTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCC
T ss_pred hhhhhHhhcCCCcCCCCCCccccccceecCcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999997 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEe
Q 002994 75 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFY 154 (860)
Q Consensus 75 ~~~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiw 154 (860)
|++||+. +||||+|| |||||||||||| +||||
T Consensus 181 ~~~ri~~-----------------------------~dNfW~~G--GpcGPcsEI~~d-----------------glEiw 212 (752)
T 2zze_A 181 XPEDITF-----------------------------KENPWAGG--GNAGPAFEVLYR-----------------GLEVA 212 (752)
T ss_dssp CGGGEEE-----------------------------EECCEEET--TEEECEEEEEET-----------------TEEEE
T ss_pred chhheee-----------------------------ccCcccCC--CCCCCceeEEEC-----------------CEeee
Confidence 9999741 69999999 999999999996 29999
Q ss_pred eeecccc-------------cccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccC--
Q 002994 155 NLVFMQY-------------NKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQ-- 219 (860)
Q Consensus 155 NlVF~q~-------------~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~-- 219 (860)
||||||| || ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++++|++|+.
T Consensus 213 NlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~ 290 (752)
T 2zze_A 213 TLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEK 290 (752)
T ss_dssp EEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHH
T ss_pred eeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchh
Confidence 9999999 88 69999999999999999999999999999999999 9999999999999999853
Q ss_pred ------------Cccc-c--------------------------ccceeeehhhhhHHHhhhcCCCccCCCCCchHHHHH
Q 002994 220 ------------SNDR-T--------------------------NLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRL 260 (860)
Q Consensus 220 ------------~~~~-~--------------------------~~~~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRri 260 (860)
+.+. . +.++||||||+||++|||+||++|||+|||||||||
T Consensus 291 ~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRri 370 (752)
T 2zze_A 291 ILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLL 370 (752)
T ss_dssp HHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHH
T ss_pred hhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHH
Confidence 2001 1 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 261 IRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADA 340 (860)
Q Consensus 261 lRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~ 340 (860)
||||+||+++||++.| |++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++
T Consensus 371 lRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~-- 439 (752)
T 2zze_A 371 IRKSIRHLRELGLEVP---------LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIA-- 439 (752)
T ss_dssp HHHHHHHHHHTTCCCC---------HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCcc---------hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999988 89999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChh-cHHHHHHHHHHHHHHhhcccccccCchhHhhhh
Q 002994 341 LSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEK 419 (860)
Q Consensus 341 ~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 419 (860)
+++++|. +.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++.. .. ..+...+. .
T Consensus 440 --~~~~~~~-~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~-~~--~~~~~~~~-~ 512 (752)
T 2zze_A 440 --KLKKKGI-KEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG-EE--LVDFELLK-D 512 (752)
T ss_dssp --HHHHHSC-SCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC----------CCCSSSSS-S
T ss_pred --HhhhcCC-CccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc-cc--chhhHHhc-c
Confidence 5544343 579999999999999999999999999999999999 899999999999886521 11 10011122 2
Q ss_pred CCCCccccccc---ccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEe
Q 002994 420 IPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKD 496 (860)
Q Consensus 420 ~~~t~f~gY~~---~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~d 496 (860)
.++|+|+||++ ++++|+|+++.. .+||||+|||||||||||+|+|+|..++. .++|.|
T Consensus 513 ~~~T~~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~------~~~V~d 573 (752)
T 2zze_A 513 LPDTRRLYYEDPFMXEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGR------EVXVTN 573 (752)
T ss_dssp SCCCEEHHHHCTTCCEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTE------EEEEEE
T ss_pred CCCceeecccCCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCE------EEEEEe
Confidence 57899999998 789999999974 36999999999999999999999987654 799999
Q ss_pred EEEeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCC
Q 002994 497 VKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHR 576 (860)
Q Consensus 497 v~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~ 576 (860)
|++. +|.++|++.. .+.+.+|++|.++|||+||+++|++|||+|||++||+++||.+++|.|++++++++||||+++.
T Consensus 574 v~k~-~g~ivH~~~~-~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~ 651 (752)
T 2zze_A 574 VQXV-GXVIIHXVED-PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYX 651 (752)
T ss_dssp EEEE-TTEEEEEESC-GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSS
T ss_pred eeec-CcEEEEeccc-cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCC
Confidence 9999 8999999975 5678899999999999999999999999999999999999999999999999999999999989
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCcccccccccccccccccccE
Q 002994 577 PLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAF 654 (860)
Q Consensus 577 ~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~f 654 (860)
++|+++|.+||++||++|++|+||++.+++++||.+.+..++| +++|++.||||+||++|.++||||||+|||+||.|
T Consensus 652 ~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~f 731 (752)
T 2zze_A 652 RISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPI 731 (752)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEE
Confidence 9999999999999999999999999999999999999888887 78899999999999999999999999999999999
Q ss_pred EEEeeecccCCeEEEEEEecH
Q 002994 655 KIISEQGIASGIRRIEAVAGE 675 (860)
Q Consensus 655 kI~~~~~~~~G~~RI~~v~G~ 675 (860)
+|++.+++++|+|||+|+||.
T Consensus 732 KIls~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 732 XILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp EEEEEEEEETTEEEEEEEECC
T ss_pred EEEEEEEEcCCEEEEEEEeCC
Confidence 999999999999999999994
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.9e-170 Score=1499.10 Aligned_cols=572 Identities=33% Similarity=0.553 Sum_probs=529.9
Q ss_pred CCCCccccc-ccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccC-----cccHHHHHHHHHHhhhcccCC
Q 002994 1 MLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEFSTVEFGL 74 (860)
Q Consensus 1 M~qfk~~f~-g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfg-----dYfK~eai~~awe~lt~~l~l 74 (860)
|+||||||+ |..+||++|+|++|||||+|||||||+|+||||||||||||||| ||||+|||+|||||| ++|||
T Consensus 101 m~~fkp~~~~g~~~p~~~~~~~~Q~ciR~~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~ 179 (739)
T 2ztg_A 101 IADFQPFVTSGVAPPPANPLTISQPCIRLDDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGV 179 (739)
T ss_dssp GGGGTTTTTTSSSCCSSSSEEEEEEEECGGGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTC
T ss_pred hhhCcHhHhCCCCCCCCCCcccccccccCcccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-HHhCC
Confidence 899999997 99999999999999999999999999999999999999999999 999999999999999 78999
Q ss_pred CCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEe
Q 002994 75 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFY 154 (860)
Q Consensus 75 ~~~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiw 154 (860)
||+||. + +||||+|| |||||||||||| +||||
T Consensus 180 ~~~~i~--------------------------~---~dnfW~~g--Gp~Gpc~Ei~~d-----------------g~Eiw 211 (739)
T 2ztg_A 180 KKEDIV--------------------------Y---KEEPWAGG--GNAGPCLEAIVG-----------------GLEVA 211 (739)
T ss_dssp CGGGCE--------------------------E---EEEEEEET--TEEEEEEEEEET-----------------TEEEE
T ss_pred CHHHee--------------------------e---ccCcccCC--CCCCCeeEEEEC-----------------CEEee
Confidence 999752 1 79999999 999999999996 29999
Q ss_pred eeecccccccCCCccc-------cCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCcc--CC-----
Q 002994 155 NLVFMQYNKKDDGSLE-------PLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYA--QS----- 220 (860)
Q Consensus 155 NlVF~q~~~~~~g~~~-------~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~--~~----- 220 (860)
|+|||||||+++|.+. |||+|+||||||||||||+|||++||||| +|.|||++|++++|++|+ .+
T Consensus 212 nlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~y~~~~~~~~~~ 290 (739)
T 2ztg_A 212 TLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRI 290 (739)
T ss_dssp EEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTTCHHHHHH
T ss_pred eeeeEEeeecCCCceeecCccccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCCccccccchhhh
Confidence 9999999999999998 99999999999999999999999999999 999999999999999984 11
Q ss_pred ------------ccc-c-------c-------------------cceeeehhhhhHHHhhhcCCCccCCCCCchHHHHHH
Q 002994 221 ------------NDR-T-------N-------------------LNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLI 261 (860)
Q Consensus 221 ------------~~~-~-------~-------------------~~~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRril 261 (860)
.+. . + .++||||||+||++|||+||++|||+||||||||||
T Consensus 291 ~~~~~~~~G~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRril 370 (739)
T 2ztg_A 291 VAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMI 370 (739)
T ss_dssp HHHHHHHHHHHTTCCTHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHH
T ss_pred hhhhhhcccccCcccchhHHHHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHH
Confidence 001 0 1 589999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002994 262 RRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADAL 341 (860)
Q Consensus 262 RRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~ 341 (860)
|||+||+++||++.| |++||+.|++.|++ ||.++++.|++||+.||++|.+||++|+++|+++++
T Consensus 371 RRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~--- 435 (739)
T 2ztg_A 371 RRSLRLAEELELGLD---------LYDLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVE--- 435 (739)
T ss_dssp HHHHHHHHHTTCSSC---------HHHHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCcc---------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999999998 89999999999999 999999999999999999999999999999999997
Q ss_pred hhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChh-cHHHHHHHHHHHHHHhhcccccccCchhHhhhhC
Q 002994 342 SRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKI 420 (860)
Q Consensus 342 ~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 420 (860)
+++ .|||++||+||||||||+|||++||+|+|++||++ +|+++|++||++||++.. . +. .+....
T Consensus 436 -~~~------~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~a~~~~~-----~-~~-~~~~~~ 501 (739)
T 2ztg_A 436 -RKK------KLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKVQE-----K-KI-TLQNEY 501 (739)
T ss_dssp -HHS------BCCHHHHHHHHHHHCCCHHHHHHHHHHTTCBCCCCTTHHHHHHHTTSBCCCCCC-----C-CC-CCSSCC
T ss_pred -Hhc------CCCHHHHHHHHHhcCCCHHHHHHHHHHcCCeeCCcccHHHHHHHHHHHHhhccc-----c-ch-hhhccC
Confidence 431 39999999999999999999999999999999999 899999999998876421 1 10 122225
Q ss_pred CCCccccccc---ccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEeE
Q 002994 421 PDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDV 497 (860)
Q Consensus 421 ~~t~f~gY~~---~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv 497 (860)
++|+|+||++ .+++|+|+++.. .+||||+|||||||||||+|+|+|..++. .++|.||
T Consensus 502 ~~T~~l~Y~~~y~~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~------~~~V~dv 562 (739)
T 2ztg_A 502 PATEKLYYDDPTLLEFEAEVIGVEG-------------DFVILNRSAFYPESGGQDNDVGYLIANGG------KFEVVDV 562 (739)
T ss_dssp CCCEECTTTCTTCCEEEEEEEEEET-------------TEEEESEECCCCSBTTBCCCCEEEEETTE------EEEECEE
T ss_pred CCceeecccCCcccEEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEECCE------EEEEEEE
Confidence 7899999999 789999999974 26999999999999999999999987654 7999999
Q ss_pred EEeCCCEEEEEEEeecccc-CCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCC
Q 002994 498 KKSLGSVFVHKGTIREGVL-EVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHR 576 (860)
Q Consensus 498 ~k~~~g~ivH~~~~~~g~l-~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~ 576 (860)
++. +|.++|++. +.+ .+|++|.++|||+||+.+|++|||+|||++|++++||.++.|.||+++++++||||+++.
T Consensus 563 ~k~-~g~ivH~~~---~~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~ 638 (739)
T 2ztg_A 563 LEA-DGVVLHVVK---GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFR 638 (739)
T ss_dssp EEE-TTEEEEECC---SSCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSS
T ss_pred EEE-CCEEEEEEc---ccCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCC
Confidence 999 799999986 345 689999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCcccccccccccccccccccE
Q 002994 577 PLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAF 654 (860)
Q Consensus 577 ~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~f 654 (860)
++|++++.+||++||++|++|+||++.+++++||.+++.++++ +.+|++.||||+|++ +.++||||||+|||+||.|
T Consensus 639 ~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IGd-~~elCGGTHV~nTgeIg~f 717 (739)
T 2ztg_A 639 RPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGD-DVQACGGTHCRSTGEIGML 717 (739)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEETT-EEEECCSCCCSBGGGGCCE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEEECC-eeeCcCCcCcccHhHcCcE
Confidence 9999999999999999999999999999999999998887887 567888999999999 9999999999999999999
Q ss_pred EEEeeecccCCeEEEEEEecH
Q 002994 655 KIISEQGIASGIRRIEAVAGE 675 (860)
Q Consensus 655 kI~~~~~~~~G~~RI~~v~G~ 675 (860)
+|++++++++|+|||+|+||.
T Consensus 718 kIls~s~i~~GvrRIeavtG~ 738 (739)
T 2ztg_A 718 KILKVESIQDGVIRFEFAAGE 738 (739)
T ss_dssp EEEEEEEEETTEEEEEEEESC
T ss_pred EEEEEeEEcCCEEEEEEEecC
Confidence 999999999999999999995
No 3
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=1e-157 Score=1304.71 Aligned_cols=411 Identities=46% Similarity=0.847 Sum_probs=379.9
Q ss_pred CCCCcccccccCCCCCCCccccccccC--C--CCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCC
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIR--T--NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 76 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR--~--nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~ 76 (860)
||||||||+|.++||++|+|+|||||| + |||||||+|+|||||||||||||||||||+|||+|||||||++|||||
T Consensus 44 M~~FKp~flG~~~p~~~r~t~sQkCiRag~~hNDlenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~ 123 (465)
T 1yfs_A 44 MVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123 (465)
T ss_dssp TSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCG
T ss_pred hhhhhHHhcCCCCCCCCceeccccccccCCCcccHhhcCCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCH
Confidence 999999999999999999999999999 4 499999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeee
Q 002994 77 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNL 156 (860)
Q Consensus 77 ~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNl 156 (860)
+|||||||++|+||++||++.+|+|++||+++|.+||||+||+|||||||||||||+|++++ +|+||||||||
T Consensus 124 ~rL~vTv~~~D~Ea~~iW~~~~G~p~~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNl 196 (465)
T 1yfs_A 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNL 196 (465)
T ss_dssp GGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEE
T ss_pred HHeEEEEeCCCHHHHHHHHHhcCCCHHHeeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCC-------CCCCEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999998876 27899999999
Q ss_pred ecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCccccccceeeehhhhh
Q 002994 157 VFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLR 236 (860)
Q Consensus 157 VF~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R 236 (860)
|||||||++||+|.|||+||||||||||||+|||||++||||||+|.|||++|++++|++|+.+. ..++++||||||+|
T Consensus 197 VFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~Y~~~~-~~d~s~rvIADH~R 275 (465)
T 1yfs_A 197 VFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKF-ETDVALRVIADHLR 275 (465)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCCTTSCH-HHHHHHHHHHHHHH
T ss_pred eeeEEEecCCCccccCCCCceecCcCHHHHHHHHcCCCccchhhhHHHHHHHHHHHhCCCCCCCc-ccceeEEEEcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999997543 56789999999999
Q ss_pred HHHhhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHH
Q 002994 237 AIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELK 316 (860)
Q Consensus 237 ~~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~ 316 (860)
|++|||+||++|||+|||||||||||||+|++++||++.| ||++||+.|++.|++.||||.++++.|.+||+
T Consensus 276 ~~~f~I~DGv~PsN~GrGYVLRRilRRavr~g~~Lg~~~~--------fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~ 347 (465)
T 1yfs_A 276 AITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENP--------FLYKGVDLVVDIMKEPYPELELSREFVKGIVK 347 (465)
T ss_dssp HHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCCSC--------CHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccCCCCcchHHHHHHHHHHHHHHHhCCCch--------hHHHHHHHHHHHHhccCchhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChhcHHHHHHHHH
Q 002994 317 REELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQR 396 (860)
Q Consensus 317 ~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~~f~~~~~~~~ 396 (860)
.||++|.+||++|+++|+++++ +++++|+ ++|||++||+||||||||+|||++||+|+|++||+++|+++|++||
T Consensus 348 ~EE~~F~~TL~~G~~~l~~~~~----~~~~~~~-~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~ 422 (465)
T 1yfs_A 348 GEEKRFIKTLKAGMEYIQEVIQ----KALEEGR-KTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQR 422 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHTTC-CEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhcCC-CcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHH
Confidence 9999999999999999999998 5544442 4799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccc-cCchhHhhhhCCCCccccccccc
Q 002994 397 RQSQAAHNAVKLS-VDDSADLAEKIPDTEFLGYDTLS 432 (860)
Q Consensus 397 ~~s~~~~~~~~~~-~~~~~~~~~~~~~t~f~gY~~~~ 432 (860)
++||++++..... .....++.+...+|+|+||+.++
T Consensus 423 ~rar~~~~~~~~~~~~~~~~ll~~~~~seF~GY~~~~ 459 (465)
T 1yfs_A 423 ERARKHFKVEAKKVKPVYSHLKELGKTSAFVGAAALE 459 (465)
T ss_dssp HTTTTC---------CCCCCTTCHHHHTTSBCGGGC-
T ss_pred HHHHhhhhcCccchhHHHHHHhhccCCceeecchhhh
Confidence 9999876432211 11112222223579999998664
No 4
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=4.9e-155 Score=1276.33 Aligned_cols=382 Identities=51% Similarity=0.912 Sum_probs=367.6
Q ss_pred CCCCcccccccCCCCCCCccccccccCC----CCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhh--cccCC
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFST--VEFGL 74 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR~----nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt--~~l~l 74 (860)
||||||||+|.++||++|+||||||||+ |||||||+|+|||||||||||||||||||+|||.||||||| ++|||
T Consensus 43 M~~FKp~flG~~~p~~~r~~~sQkCiR~gGKHnDlenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl 122 (441)
T 3hy0_A 43 MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122 (441)
T ss_dssp GGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCC
T ss_pred chhhhhhhcCCCCCCCCCccccccceecCCCCCCHHhhCCCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCC
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999 66999
Q ss_pred CCCceEEEEeCChHHHHHHHHHhcCCCCCcccccC-------CCCCcccCCCCCCCCCceEEEeecCCCCCCCCCC--CC
Q 002994 75 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMG-------ADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVD--LG 145 (860)
Q Consensus 75 ~~~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~-------~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~--~~ 145 (860)
||+|||||||.+|+||++||++.+|+|++||+++| .+||||+||+|||||||||||||+|++++++.+. .+
T Consensus 123 ~~erL~vTvf~~D~Ea~~iW~~~~Gvp~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~ 202 (441)
T 3hy0_A 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEE 202 (441)
T ss_dssp CGGGEEEEEETTCHHHHHHHHHTTCCCGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTT
T ss_pred CHHHeEEEEeCCCHHHHHHHHHccCCCHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCC
Confidence 99999999999999999999999999999999999 8999999999999999999999999998754332 37
Q ss_pred CCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCccccc
Q 002994 146 DDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTN 225 (860)
Q Consensus 146 ~~~r~lEiwNlVF~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~~~~~~~ 225 (860)
||+|||||||||||||||+++|+|.|||+||||||||||||+|||||++||||||+|.|||+++++++|.+|. .+
T Consensus 203 d~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~~~-----~~ 277 (441)
T 3hy0_A 203 DGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL-----SN 277 (441)
T ss_dssp TSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCCCT-----TC
T ss_pred CCCCeEEEeeeeeeeeeecCCCccccCCCCceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCCcc-----cc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999872 46
Q ss_pred cceeeehhhhhHHHhhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhH
Q 002994 226 LNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVK 305 (860)
Q Consensus 226 ~~~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~ 305 (860)
+++||||||+||++|||+||++|||+|||||||||||||+||+++||++.| ||++||+.|++.|++.||||.
T Consensus 278 ~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRRAvr~g~~Lg~~~~--------fl~~Lv~~v~~~m~~~yPeL~ 349 (441)
T 3hy0_A 278 KSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKET--------FFYKLVGPLIDVMGSAGEDLK 349 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHTCCSC--------CGGGGHHHHHHHHGGGGHHHH
T ss_pred ceeEEecchHHHHHHHHhcCcccCCCCcchhHHHHHHHHHHHHHHhCCCCc--------cHHHHHHHHHHHHhhhhhHHH
Confidence 799999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeCh
Q 002994 306 AREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDM 385 (860)
Q Consensus 306 ~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~ 385 (860)
++++.|.+||+.||++|.+||++|+++|+++++ +++ + +.|||++||+||||||||+|||++||+|+|++||+
T Consensus 350 ~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~----~~~--~--~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~ 421 (441)
T 3hy0_A 350 RQQAQVEQVLKTEEEQFARTLERGLALLDEELA----KLS--G--DTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDE 421 (441)
T ss_dssp HTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----SCC--S--SEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc--C--CCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccH
Confidence 999999999999999999999999999999987 542 2 48999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHhh
Q 002994 386 KGFDIEMENQRRQSQAAH 403 (860)
Q Consensus 386 ~~f~~~~~~~~~~s~~~~ 403 (860)
++|+++|++||++||++.
T Consensus 422 ~~F~~~m~~qr~rar~~~ 439 (441)
T 3hy0_A 422 AGFEAAMEEQRRRAREAS 439 (441)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999753
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.7e-55 Score=464.57 Aligned_cols=228 Identities=23% Similarity=0.295 Sum_probs=207.6
Q ss_pred cccccccc---cceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEeEEEe
Q 002994 424 EFLGYDTL---SAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKS 500 (860)
Q Consensus 424 ~f~gY~~~---~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~ 500 (860)
+.++|++. +++|+|+++..+ ++.++|+||+|||||||||||+|+|+|. .++|.+|++.
T Consensus 4 ~~ly~~d~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----------~~~V~~v~~~ 64 (241)
T 3kew_A 4 TKLYYEDQYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----------GIKVLDVYEE 64 (241)
T ss_dssp EEGGGTCTTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----------TEEEEEEEEE
T ss_pred hhhhhhCcccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----------eEEEEEEEEe
Confidence 56677764 789999999863 2358999999999999999999999994 4799999999
Q ss_pred CCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCH
Q 002994 501 LGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLD 580 (860)
Q Consensus 501 ~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~ 580 (860)
+|.++|+++ +++++|++|.+.|||+||+++|++|||+|||++|++++||.+ +.|++++++++||||+ .++|+
T Consensus 65 -~g~i~H~~~---~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~ 136 (241)
T 3kew_A 65 -EGKVYHVLE---KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDE 136 (241)
T ss_dssp -TTEEEEEES---SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCH
T ss_pred -CCEEEEEEC---CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCH
Confidence 799999986 568899999999999999999999999999999999999987 5799999999999999 68999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCcccccccccccccccccccEEEEeee
Q 002994 581 TELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQ 660 (860)
Q Consensus 581 e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~ 660 (860)
+++.+||++||++|++|+||++.+++++||.+++++++ +++|++.||||+|+++|.++||||||+|||+||.|+|++.+
T Consensus 137 e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~~~-~e~~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~ 215 (241)
T 3kew_A 137 KTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRA-LPKTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWE 215 (241)
T ss_dssp HHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCCSSC-CCCCSSCCCEEEETTTEEEECCSCCCSBSGGGCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcChhhc-CCccCCcEEEEEECCeEEEcCCCCCcCCHhhcCCEEEEEEe
Confidence 99999999999999999999999999999999887664 67799999999999999999999999999999999999999
Q ss_pred cccCCeEEEEEEecHHHHHH
Q 002994 661 GIASGIRRIEAVAGEAFIEY 680 (860)
Q Consensus 661 ~~~~G~~RI~~v~G~~A~~~ 680 (860)
++++| +||+|+||.+|++.
T Consensus 216 ~~~~~-~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 216 KHKNA-TRIEYVAGNRAVSE 234 (241)
T ss_dssp EETTE-EEEEEEEGGGGC--
T ss_pred ccCCc-EEEEEEECHHHHhc
Confidence 97655 69999999999863
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=7.1e-51 Score=423.00 Aligned_cols=207 Identities=29% Similarity=0.375 Sum_probs=187.8
Q ss_pred CCccccccc---ccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEeEE
Q 002994 422 DTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVK 498 (860)
Q Consensus 422 ~t~f~gY~~---~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~ 498 (860)
+|+.++|++ .+++|+|+++. + .+|+||+|||||||||||+|+|+|. .++|.+|+
T Consensus 4 ~t~~ly~~d~y~~~~~a~V~~~~-~------------~~vvld~T~Fype~GGQ~~D~G~i~----------~~~V~~v~ 60 (216)
T 2e1b_A 4 MTRKLYYEDAYLKEAKGRVLEIR-D------------NAILLDQTIFYPTGGGQPHDRGTIN----------GVEVLDVY 60 (216)
T ss_dssp SCCCSTTSCTTCCEEEECBCCCC-S------------SCCCBSCCCSCCCCTTCCCCCEEET----------TEEEEEEE
T ss_pred hhHHHHhhCcccceeeEEEEEEe-C------------CEEEEeCCCccCCCCCCCCCEEEEc----------cEEEEEEE
Confidence 467778877 46789999883 1 1699999999999999999999994 27899999
Q ss_pred EeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCc-eeeccccccCCcEEEecCCCCC
Q 002994 499 KSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQE-TSQAGSLVAFDRLRFDFNFHRP 577 (860)
Q Consensus 499 k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~-v~q~Gs~v~~d~~r~Df~~~~~ 577 (860)
+..+|.++|++.. .+++++|++|.+.|||+||+.+|++|||+|||++||+++||.+ +.+.|++++++++||||+++++
T Consensus 61 ~~~~~~i~H~~~~-~~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~ 139 (216)
T 2e1b_A 61 KDEEGNVWHVVKE-PEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN 139 (216)
T ss_dssp CCTTCCCEEEESC-GGGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC
T ss_pred ECcCCEEEEEEcc-CCCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCC
Confidence 8646899999975 4678999999999999999999999999999999999999973 3456999999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCcccccccccccccccccccEEEE
Q 002994 578 LLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKII 657 (860)
Q Consensus 578 lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~ 657 (860)
++++ +.+||++||++|++|+||++.++++ ||||+|+++|.++||||||+|||+||.|+|+
T Consensus 140 lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~-------------------vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~ 199 (216)
T 2e1b_A 140 LNKY-KEQIISLFNKYVDEGGEVKIWWEGD-------------------RRYTQIRDFEVIPCGGTHVKDIKEIGHIKKL 199 (216)
T ss_dssp GGGG-HHHHHHHHHHHHHHCCBEEEEESSS-------------------CEEEEETTSCEECCCSCCCSBGGGTCCEEEE
T ss_pred CCHH-HHHHHHHHHHHHhcCCCEEEEEcCC-------------------EEEEEECCEEEECCCCCCcccHhhCceEEEE
Confidence 9987 9999999999999999999998773 9999999999999999999999999999999
Q ss_pred eeecccCCeEEEEEE
Q 002994 658 SEQGIASGIRRIEAV 672 (860)
Q Consensus 658 ~~~~~~~G~~RI~~v 672 (860)
+.+++++|+|||+|.
T Consensus 200 ~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 200 KRSSIGRGKQRLEMW 214 (216)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEeEEcCCEEEEEEE
Confidence 999999999999986
No 7
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.94 E-value=3.5e-26 Score=225.95 Aligned_cols=143 Identities=23% Similarity=0.275 Sum_probs=119.0
Q ss_pred HHHHHhhHHHHHHHHHHhHhCCceeecc-ccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHH
Q 002994 533 RAKVHHTATHLLQAALKKVIGQETSQAG-SLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAK 611 (860)
Q Consensus 533 ~~m~~HTa~HLL~aAl~~~lg~~v~q~G-s~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~ 611 (860)
..|++|||+|||++|++++||.++.+.+ .+++++++|+||+.+.++|++++.+||++||++|++|+||+..+++++||.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 4799999999999999999995554444 467665677777766789999999999999999999999999999999999
Q ss_pred HhchhhhcCC-CCC---CcEEEEEECCcccccccccccccccccccEEEEeeec-ccCCeEEEEEEecH
Q 002994 612 RAGAIAMFGE-KYG---EQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQG-IASGIRRIEAVAGE 675 (860)
Q Consensus 612 ~~~~~~l~~e-ky~---~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fkI~~~~~-~~~G~~RI~~v~G~ 675 (860)
+++...++.. ..+ +.||||+|+++|.++||||||+|||+||.|+|+++++ .+++..||+|..+.
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~ 152 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred HhhCccccccccCCCCCCeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence 8754444431 122 4799999999999999999999999999999999875 45666799988774
No 8
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.92 E-value=7.2e-25 Score=228.98 Aligned_cols=164 Identities=19% Similarity=0.326 Sum_probs=135.3
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEeChhhh-hHHHHHhhHHHHHHHHHHhHhCC-ceeeccccccCCcEEEecCCCCCCC
Q 002994 502 GSVFVHKGTIREGVLEVGREVEAIVDPKLR-QRAKVHHTATHLLQAALKKVIGQ-ETSQAGSLVAFDRLRFDFNFHRPLL 579 (860)
Q Consensus 502 ~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR-~~~m~~HTa~HLL~aAl~~~lg~-~v~q~Gs~v~~d~~r~Df~~~~~lt 579 (860)
+|.+++. ..++..|+.|+ .|+++.+ -..|++|||+|||++|++++||. ++. .|.++ ++++||||++..++|
T Consensus 41 Ng~l~dL----~~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~-~g~~~-~~g~y~d~~~~~~~t 113 (224)
T 1tke_A 41 NGELVDA----CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMA-IGPVI-DNGFYYDVDLDRTLT 113 (224)
T ss_dssp TTEEEET----TCCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEEC-CCCEE-TTEEEEEEECSSCCC
T ss_pred CCEEecc----ceEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEE-ECCcc-CCeEEEEEeCCCCCC
Confidence 6777763 24577788777 4787766 48999999999999999999974 333 35544 779999999888999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhch-------hhhcCC-C-CCCcEEEEEECCcccccccccccccccc
Q 002994 580 DTELEEIERLINGWIGDANLLQTKVMALDDAKRAGA-------IAMFGE-K-YGEQVRVVEVPGVSMELCGGTHVNNTAE 650 (860)
Q Consensus 580 ~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~-------~~l~~e-k-y~~~VRVV~Igg~d~e~CgGTHV~nTge 650 (860)
+++|.+||++||++|++|+||+..+++++||.+++. .+++.. . +.+.||||+|+++ .++||||||+|||+
T Consensus 114 ~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~~-~dlC~G~Hv~~Tg~ 192 (224)
T 1tke_A 114 QEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDMCRGPHVPNMRF 192 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTE-EEEESCCCCSBGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCCE-EEECCCcCCCcCcc
Confidence 999999999999999999999999999999998653 345543 3 5678999999996 68999999999999
Q ss_pred cccEEEEeeec-------ccCCeEEEEEEe
Q 002994 651 IRAFKIISEQG-------IASGIRRIEAVA 673 (860)
Q Consensus 651 Ig~fkI~~~~~-------~~~G~~RI~~v~ 673 (860)
||.|+|++.++ ...-..||+.++
T Consensus 193 i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a 222 (224)
T 1tke_A 193 CHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (224)
T ss_dssp CCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred cceEEEEEecceeEcCCCCCceeEEEEEec
Confidence 99999999865 234467888775
No 9
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=99.92 E-value=2.5e-24 Score=215.54 Aligned_cols=170 Identities=25% Similarity=0.352 Sum_probs=155.1
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCCeEEEE
Q 002994 673 AGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLV 752 (860)
Q Consensus 673 ~G~~A~~~~~~~~~~l~~l~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~a~~l~~~~~~~~~~~~~~~~~ 752 (860)
.|.+|++|+++.++.+.+++..|+++++++++++++|++++++++|++++|+.+++...++++..++..+ +++++++
T Consensus 1 ~G~~A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i---~g~~~~~ 77 (171)
T 2zvf_A 1 MGEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEF---DSMKVVA 77 (171)
T ss_dssp -CGGGTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEES---SSCEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEe---CCEEEEE
Confidence 4889999999999999999999999999999999999999999999999999999999999998888888 8999998
Q ss_pred EEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceee
Q 002994 753 ESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQA 832 (860)
Q Consensus 753 ~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQG 832 (860)
..+ +.|++.|+.+++.++++ + .+++|++ ..++ +.++++++++ +++|++|++++++.+||||||+|+||||
T Consensus 78 ~~~-~~d~~~lr~~~~~l~~~--~-~vv~l~~-~~~~-~~~v~~~~~~----~~~a~~lvk~~~~~~gGkGGGkp~~AQg 147 (171)
T 2zvf_A 78 EVV-DADMQALQKLAERLAEK--G-AVGCLMA-KGEG-KVFVVTFSGQ----KYDARELLREIGRVAKGSGGGRKDVAQG 147 (171)
T ss_dssp EEC-SCCHHHHHHHHHHHHHT--T-EEEEEEE-ECSS-SEEEEEEESS----SSCHHHHHHHHHHHHTEECCBCSSEEEE
T ss_pred EEe-CCCHHHHHHHHHHHhcC--C-CEEEEEE-cCCC-eEEEEEECCC----CCCHHHHHHHHHHHcCCCCCCcHHHccc
Confidence 888 88999999999999998 4 4777776 4566 7888888876 5999999999999999999999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHHhh
Q 002994 833 GGRKPENLSIALEKARADLVSVL 855 (860)
Q Consensus 833 gg~~~~~l~~al~~~~~~l~~~L 855 (860)
+|++++.+++|++.+.+++..++
T Consensus 148 gg~~~~~l~~al~~~~~~~~~~~ 170 (171)
T 2zvf_A 148 AVQQLLDREEMLDVIFRFLSEHE 170 (171)
T ss_dssp EESSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999987654
No 10
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.87 E-value=3.4e-23 Score=247.37 Aligned_cols=169 Identities=22% Similarity=0.359 Sum_probs=139.3
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCHH
Q 002994 502 GSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDT 581 (860)
Q Consensus 502 ~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~e 581 (860)
+|.+++. ..++..+..|...-..+.+-..+.+|||+|||++|++++||.+..+.|+.+ ++++||||++..++|++
T Consensus 43 ng~~~dl----~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~t~e 117 (645)
T 1nyr_A 43 NGQLVDL----TKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSD 117 (645)
T ss_dssp TTEEECT----TSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCCCST
T ss_pred CCEEEeC----CcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCCCHH
Confidence 5666552 234556666666444556779999999999999999999998888899988 78999999988899999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhch-----hhhcCCCCC-CcEEEEEECCcccccccccccccccccccEE
Q 002994 582 ELEEIERLINGWIGDANLLQTKVMALDDAKRAGA-----IAMFGEKYG-EQVRVVEVPGVSMELCGGTHVNNTAEIRAFK 655 (860)
Q Consensus 582 ~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~-----~~l~~eky~-~~VRVV~Igg~d~e~CgGTHV~nTgeIg~fk 655 (860)
++.+||++||++|++|+||+..+++++||.+++. ..++..... +.||||+||++ .++||||||+|||+||.|+
T Consensus 118 dl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g~~-~dlC~G~Hv~~Tg~i~~fk 196 (645)
T 1nyr_A 118 DFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDF-TDLCRGVHVPSTAKIKEFK 196 (645)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTE-EEECCSCCCSCGGGCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEECCE-EEecCCcccCCCCCCceEE
Confidence 9999999999999999999999999999998743 123322222 47999999997 6899999999999999999
Q ss_pred EEeee-------cccCCeEEEEEEecHH
Q 002994 656 IISEQ-------GIASGIRRIEAVAGEA 676 (860)
Q Consensus 656 I~~~~-------~~~~G~~RI~~v~G~~ 676 (860)
|++.+ +......||+.++...
T Consensus 197 l~~~~~a~~~~~~~~~~l~ri~g~~~~~ 224 (645)
T 1nyr_A 197 LLSTAGAYWRGDSNNKMLQRIYGTAFFD 224 (645)
T ss_dssp EEEEEEEETTSCSSSCEEEEEEEEEESS
T ss_pred EeeeCchHHHHHhHHHHHHHHHHHhcCC
Confidence 99986 4556788999888743
No 11
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.84 E-value=1.2e-20 Score=224.93 Aligned_cols=165 Identities=18% Similarity=0.321 Sum_probs=133.5
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEeChh-hhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCCCCCH
Q 002994 502 GSVFVHKGTIREGVLEVGREVEAIVDPK-LRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLD 580 (860)
Q Consensus 502 ~g~ivH~~~~~~g~l~~G~~V~~~VD~~-rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~ 580 (860)
+|.+++.. .++..+..|. .|+++ .+...+++|||+|||++|++++||....+.|+++. +++||||++..++|+
T Consensus 41 ng~~~dl~----~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~~~t~ 114 (642)
T 1qf6_A 41 NGELVDAC----DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQ 114 (642)
T ss_dssp TTEEEETT----SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSSCCCH
T ss_pred CCEEeccc----cccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCCCCCCH
Confidence 67776632 3455555555 45555 67789999999999999999999763347788886 789999999889999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhch-------hhhc-CCCCC-CcEEEEEECCccccccccccccccccc
Q 002994 581 TELEEIERLINGWIGDANLLQTKVMALDDAKRAGA-------IAMF-GEKYG-EQVRVVEVPGVSMELCGGTHVNNTAEI 651 (860)
Q Consensus 581 e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~-------~~l~-~eky~-~~VRVV~Igg~d~e~CgGTHV~nTgeI 651 (860)
+++.+||++||++|++|+||+..+++++||.+++. ..++ +..+. +.||||+||++ .++|+||||+|||+|
T Consensus 115 edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~~-~dlC~GpHv~~Tg~I 193 (642)
T 1qf6_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDMCRGPHVPNMRFC 193 (642)
T ss_dssp HHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETTE-EECCSSCCCSBGGGC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECCE-EEecCCCccCCCCcc
Confidence 99999999999999999999999999999998743 2233 32333 47999999996 689999999999999
Q ss_pred ccEEEEeeec---c----cCCeEEEEEEe
Q 002994 652 RAFKIISEQG---I----ASGIRRIEAVA 673 (860)
Q Consensus 652 g~fkI~~~~~---~----~~G~~RI~~v~ 673 (860)
|.|+|++.++ . ..-+.||+-.+
T Consensus 194 ~~fkl~~~~~~yw~g~~~~~~l~r~~g~~ 222 (642)
T 1qf6_A 194 HHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (642)
T ss_dssp CSEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred eeEEEeeeccccccCccCCceeEeeeccc
Confidence 9999999877 2 33466898876
No 12
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=99.71 E-value=4.9e-17 Score=151.50 Aligned_cols=104 Identities=24% Similarity=0.486 Sum_probs=95.9
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCC
Q 002994 746 NEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGG 825 (860)
Q Consensus 746 ~~~~~~~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG 825 (860)
+++++++..+++.|++.||.+++.++++.++ .+++|++ ..++++.++++++++++++ ++|++|++++++.+||||||
T Consensus 7 ~g~~~~~~~~~~~d~~~Lr~~~~~l~~~~~~-~vvvl~~-~~~~kv~~v~~v~~~~~~~-~~A~~lvk~v~~~~gGkGGG 83 (111)
T 3g98_A 7 GDFTLHYGVFEEVEPEELRNLADMLRQRTKK-DVVFIAS-RKGDKINFVIGVSKEISDK-VNAKEVIREVGKVLKGGGGG 83 (111)
T ss_dssp TTEEEEEEEEESCCHHHHHHHHHHHTTSSSS-EEEEEEE-EETTEEEEEEEECGGGTTT-SCHHHHHHHHHHHTTBCCEE
T ss_pred CCEEEEEEEeCCCCHHHHHHHHHHHHhhcCC-cEEEEEE-ecCCcEEEEEEECHHHhcc-CCHHHHHHHHHHHcCCCcCC
Confidence 8999999999999999999999999998876 4777776 5678999999999998876 99999999999999999999
Q ss_pred cccceeeccCCcccHHHHHHHHHHHHH
Q 002994 826 RPNFAQAGGRKPENLSIALEKARADLV 852 (860)
Q Consensus 826 ~~~~AQGgg~~~~~l~~al~~~~~~l~ 852 (860)
||+||||+|++++++++|++.+.++++
T Consensus 84 kp~~AQggg~~~~~l~~al~~~~~~l~ 110 (111)
T 3g98_A 84 RADLAQGGGKAPDKFPEAVKLLKEILS 110 (111)
T ss_dssp CSSEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred cHHHeeecCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998874
No 13
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=84.15 E-value=0.36 Score=50.14 Aligned_cols=78 Identities=37% Similarity=0.593 Sum_probs=49.5
Q ss_pred hcCCCC-CcccccCCCCCcccCCCC-CCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCcc
Q 002994 97 EVGVPV-EHIKRMGADDNFWNSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQ 174 (860)
Q Consensus 97 ~~g~~~-~~I~~~~~~dnfW~~G~~-GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~~~~g~~~~L~~ 174 (860)
.+||++ +|=+||- +|| |+ -|| |.-|-==|+--| .+||=- |+=|.+ ..| + ++..
T Consensus 110 alGid~~~HDIRFV-EDn-WE-sPTLGAwGLGWEVWld-----------------GMEITQ--FTYFQQ-vGG-i-~c~p 164 (298)
T 1j5w_A 110 YLGINLKEHDIRFV-EDN-WE-SPTLGAWGVGWEVWLD-----------------GMEITQ--FTYFQQ-IGG-I-SLKD 164 (298)
T ss_dssp HTTCCTTTSCEEEE-EEC-CE-EGGGTEEEEEEEEEET-----------------TEEEEE--EEEEEE-BTT-B-CCSS
T ss_pred HhCCCcccCCceee-ccC-CC-CCccccccccceeeEc-----------------ceeeeh--hhhhhh-cCC-c-ccCc
Confidence 356633 3556664 555 54 222 555655666653 267653 333333 344 3 5666
Q ss_pred CcccccchHHHHHHHHhCCCCCccc
Q 002994 175 KNIDTGLGLERIARILQKVPNNYET 199 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydt 199 (860)
-.+.-=+||||||+.|||+.|+||.
T Consensus 165 v~~EITYGLERiamylQ~vd~vydl 189 (298)
T 1j5w_A 165 IPLEITYGLERIAMYLQGVDNVYEV 189 (298)
T ss_dssp CCEEEEEEHHHHHHHHHTCSSGGGC
T ss_pred cceeecccHHHHHHHHhCCCceecc
Confidence 7778889999999999999999997
No 14
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=83.04 E-value=0.42 Score=49.89 Aligned_cols=149 Identities=26% Similarity=0.402 Sum_probs=78.6
Q ss_pred ccccccCC--CCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeC--------Ch--H
Q 002994 21 TSQRCIRT--NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYE--------DD--D 88 (860)
Q Consensus 21 ~~Q~CiR~--nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~--------~D--~ 88 (860)
..|-|+=. -|+|.=-=|-..+||+--||.=...--|-+-. -.=--..||-.|+||+- ||. .| .
T Consensus 39 a~qGC~i~QPyD~EvGAGT~hPaTfLRalGpePw~~AYVqPs----RRP~DGRYGeNPNRLq~-yyQfQVilKPsP~niQ 113 (311)
T 3rf1_A 39 QEQGCAIMQPYDMPAGAGTFHPATFLRSLGKKPWAAAYVAPS----RRPTDGRYGENPNRLGA-YYQFQVLIKPSPDNIQ 113 (311)
T ss_dssp HTTTCEECCCCSSCCSSGGGSHHHHTTTSSSSCEEEEEEEEE----ECGGGCCTTCCSSCCSE-EEEEEEEEESCCTTHH
T ss_pred HHCCCEEECCccccccCCCCCHHHHHHhcCCCcceeeeeccC----CCCCCCCcCCCchhhhh-heeeEEEEcCCCccHH
Confidence 34666655 57664222444577777777633310000000 00000136777787763 332 11 1
Q ss_pred HHHHHHHHhcCCCC-CcccccCCCCCcccCCCC-CCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCC
Q 002994 89 EAFEIWNKEVGVPV-EHIKRMGADDNFWNSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDD 166 (860)
Q Consensus 89 e~~~iw~~~~g~~~-~~I~~~~~~dnfW~~G~~-GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF~q~~~~~~ 166 (860)
|-|=-=++.+||++ .|=+||- +|| |+ -|| |.-|-==|+--| .+||=- |+=|.+ ..
T Consensus 114 eLYL~SL~alGId~~~HDIRFV-EDn-WE-sPTLGAWGLGWEVWld-----------------GMEVTQ--FTYFQQ-vG 170 (311)
T 3rf1_A 114 ELYLKSLENLGFDLKSHDIRFV-EDN-WE-SPSLGAWGLGWEVWLD-----------------GMEVTQ--FTYFQQ-VG 170 (311)
T ss_dssp HHHHHHHHHTTCCGGGSCEEEE-ECC-EE-ETTTTEEEEEEEEEET-----------------TEEEEE--EEEEEE-ET
T ss_pred HHHHHHHHHhCCCccccCeeEe-ccC-CC-CCcccccccceEEEEc-----------------CeeEee--eeeeee-eC
Confidence 22222233467744 3556774 555 54 222 555544555543 156542 333333 34
Q ss_pred CccccCccCcccccchHHHHHHHHhCCCCCccc
Q 002994 167 GSLEPLKQKNIDTGLGLERIARILQKVPNNYET 199 (860)
Q Consensus 167 g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydt 199 (860)
| + ++..-.+.-=+||||||+.|||+.|+||.
T Consensus 171 G-i-~c~pv~~EITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 171 G-I-AVDLVSAEITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp T-E-ECSSCCEEEEEEHHHHHHHHTTCSSGGGS
T ss_pred C-c-cccccceeeehhHHHHHHHHhCCCeeeec
Confidence 4 3 45556777889999999999999999986
No 15
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=76.70 E-value=18 Score=42.88 Aligned_cols=90 Identities=14% Similarity=0.036 Sum_probs=59.3
Q ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCccccee
Q 002994 752 VESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQ 831 (860)
Q Consensus 752 ~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQ 831 (860)
+..-++.-...+-.+|..++++...+ ++++. . ++. .+.|. .++|+.++++.+...+ ++|||-+ +|=
T Consensus 333 v~~~~~wh~GViGIVAsrl~e~~~rP-~iv~a--~--~kg---SaRSi----~g~nl~~~L~~~~~ll-~~gGGH~-~AA 398 (666)
T 2zxr_A 333 VLLDPEGHPGVMGIVASRILEATLRP-VFLVA--Q--GKG---TVRSL----APISAVEALRSAEDLL-LRYGGHK-EAA 398 (666)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHCSC-EEEEE--T--TEE---EEECC----TTCCHHHHHHHTGGGC-SEEEECS-SEE
T ss_pred EEEcCCcCcccHHHHHHHHHHHhCCC-EEEEE--C--CEE---EEECC----CCccHHHHHHHHHhhC-cccCCCh-HHc
Confidence 33345556777888899999887764 55554 2 222 22232 2699999998887654 5677765 454
Q ss_pred eccCCcccHHHHHHHHHHHHHHhh
Q 002994 832 AGGRKPENLSIALEKARADLVSVL 855 (860)
Q Consensus 832 Ggg~~~~~l~~al~~~~~~l~~~L 855 (860)
|-.-..+.++++.+.+.+.+.+.+
T Consensus 399 G~si~~~~l~~f~~~l~~~~~~~~ 422 (666)
T 2zxr_A 399 GFAMDEALFPAFKARVEAYAARFP 422 (666)
T ss_dssp EEECCGGGHHHHHHHHHHHHHTSC
T ss_pred ccccCcccHHHHHHHHHHHHHHhc
Confidence 433466789998888888876543
No 16
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=63.56 E-value=13 Score=26.79 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRAKAAV 729 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~ 729 (860)
.+|.++|+.|..+..+|+.++..|+.-+..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 578899999999999999999999876654
No 17
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=63.40 E-value=3.7 Score=37.18 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
-|++-++-..++|.++||+||+|+||.+++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 467778888899999999999999998875
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=61.66 E-value=15 Score=26.51 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRAKAAVY 730 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~ 730 (860)
.+|.++|+.|..+..+|+.++..|+.-+...
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 5788999999999999999999998776543
No 19
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=57.58 E-value=6 Score=37.15 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 55 YFKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 55 YfK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
=-|++-.+-..++|.+.||+||+|+||.++.
T Consensus 92 e~n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 92 SEPEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp THHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 3466667777899999999999999998864
No 20
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=56.91 E-value=6.4 Score=35.36 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 54 DYFKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 54 dYfK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
.=-|++-++-..++|.+.||+||+++||++++
T Consensus 70 ~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 70 PSEPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp TTHHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 34577888888999999999999999998865
No 21
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=56.69 E-value=20 Score=25.53 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRAK 726 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~~ 726 (860)
.+|.++|+.|..+..+|++++..|+.-
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 578999999999999999999998753
No 22
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=55.41 E-value=6.1 Score=36.12 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
+++-.+--.++|.++||+|++|+||.++.
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 45556666789999999999999998875
No 23
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=55.29 E-value=6.6 Score=35.55 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
-|++-.+--.++|.+.||+||+|+||.++.
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 355666667789999999999999998875
No 24
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=54.68 E-value=5.2 Score=36.13 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
=|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 72 RTQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 477788888999999999999999998875
No 25
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=53.20 E-value=18 Score=25.65 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRA 725 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~ 725 (860)
.+|.++|+.|..++.+|+.++..|+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 47889999999999999999998875
No 26
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=52.69 E-value=6.7 Score=36.89 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
-|++-.+-.-++|.+.||+||+|+||.++.
T Consensus 93 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 93 KNPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CCHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CCchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 355666667799999999999999998875
No 27
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=52.26 E-value=8 Score=34.69 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
=|++-++-..++|.+.||+||+++||++.+
T Consensus 71 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 71 RNRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 366778888899999999999999998875
No 28
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=52.18 E-value=7.3 Score=36.52 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
-|++-.+-.-++|.+.||+||+|+||.+++
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 456666677789999999999999998864
No 29
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=51.92 E-value=8.5 Score=35.40 Aligned_cols=32 Identities=6% Similarity=0.041 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 54 DYFKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 54 dYfK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
.=-|++-++-..++|.+.||+||+++||++.+
T Consensus 70 ~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 70 RSNNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp -CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 34588888889999999999999999998875
No 30
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=51.92 E-value=6.1 Score=35.99 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
=|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 72 DNIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 366778888899999999999999998875
No 31
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=50.36 E-value=8.9 Score=34.54 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
=|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 72 QNKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 366778888899999999999999998875
No 32
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=49.57 E-value=31 Score=24.42 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRAK 726 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~~ 726 (860)
.+|.++|+.|..+..+|+.++..|+.-
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 578899999999999999999888753
No 33
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.60 E-value=33 Score=24.44 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRAK 726 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~~ 726 (860)
.+|.++|+.|..+..+|+.++..|+.-
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 578899999999999999999888753
No 34
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=47.31 E-value=35 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRAK 726 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~~ 726 (860)
.+|.++|+.|..+..+|+.++..|+.-
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 578899999999999999999988754
No 35
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.49 E-value=52 Score=24.71 Aligned_cols=36 Identities=11% Similarity=0.306 Sum_probs=28.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 696 KVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYK 731 (860)
Q Consensus 696 ~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~ 731 (860)
+.+.++|...+++.-.+....++++..|+.++-..+
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999888888888888888776544
No 36
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=46.36 E-value=32 Score=24.60 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRA 725 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~ 725 (860)
.+|.++++.|..++.+|+.++..|+.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57889999999999999999988875
No 37
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=45.15 E-value=7.6 Score=30.50 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 366667777888999999999999998864
No 38
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=44.82 E-value=7.2 Score=30.68 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 466677778888999999999999998864
No 39
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=42.89 E-value=14 Score=29.24 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
|++-++-.-+.|.+.||+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55666777788888999999999998864
No 40
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=41.93 E-value=10 Score=40.39 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=37.3
Q ss_pred CCCccccccccCCCCccccCCCCCcccccccccC-cccCcccHHHHHHHHHHhhhccc
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTVEF 72 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn-~sfgdYfK~eai~~awe~lt~~l 72 (860)
..|+-..-+|.|.-+- .. .|+||..=|-|++- .+|.|| .|.+..+.+|+...+
T Consensus 88 ~~rvf~ig~~FR~E~p-q~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 88 LKKIFVLSPNIRLESR-QK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp CCEEEEEEEEECCCCG-GG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred ccceEEEEccEeCCCC-CC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 4578888999998541 12 25799988888875 444564 688888888876553
No 41
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=41.33 E-value=50 Score=23.40 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRA 725 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~ 725 (860)
.+|.++|+.|..+..+++.++..|+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47889999999999999999988875
No 42
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=41.24 E-value=42 Score=23.96 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRA 725 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~ 725 (860)
.+|.++|+.|..+..+|+.++..|+.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 57889999999999999999988875
No 43
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=37.51 E-value=21 Score=29.73 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHH-HHHHhcCCCCCcc
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFE-IWNKEVGVPVEHI 105 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~-iw~~~~g~~~~~I 105 (860)
-|++-++-..+.|.+.||+|++++||.+.+-+.+.+. +|...+.-.++.+
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~v~~~~~~~~~~~l 66 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQAIWDAEIAPQMEAL 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHHHHHHTTTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEEEEchhhccChhhe
Confidence 3666677778889999999999999999886554332 5544332333344
No 44
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=37.19 E-value=62 Score=23.11 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRAK 726 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~~ 726 (860)
.++.++|+.|..+...++.++..|++-
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 578899999999999999999888753
No 45
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=35.47 E-value=85 Score=27.76 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=38.2
Q ss_pred CccchHHHHHHhhccCCChhhHHHHHHHcCc----eeChhcHHHHHHHHH
Q 002994 351 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQR 396 (860)
Q Consensus 351 ~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~----~vd~~~f~~~~~~~~ 396 (860)
..|+++++-.++-+.|+|.+.+.+|.++... .||.++|...|..-.
T Consensus 29 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~ 78 (106)
T 1eh2_A 29 GFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVY 78 (106)
T ss_dssp SCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence 4799999999999999999988888877543 488899999986543
No 46
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=32.95 E-value=15 Score=28.56 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55566777788888999999999998764
No 47
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=32.39 E-value=37 Score=26.90 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
|++-++-.-+.+.+.||+|++.++|.+.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66667777788888999999999998865
No 48
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=32.17 E-value=58 Score=31.67 Aligned_cols=51 Identities=18% Similarity=0.427 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccC---CCCCCCCCce
Q 002994 58 KEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS---GATGPCGPCS 127 (860)
Q Consensus 58 ~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~---G~~GpcGpcs 127 (860)
+-|-+||.+ .||+.+.| -.+++++.|++.. .-...-|||.- .++..|||..
T Consensus 107 ~GA~~fA~~-----~G~~~~~l------~t~~~~~~~~~~~--------~~~~qpn~~~nv~p~~~~~cgpy~ 160 (162)
T 1apy_A 107 ESATTFAQS-----MGFINEDL------STSASQALHSDWL--------ARNCQPNYWRNVIPDPSKYCGPYK 160 (162)
T ss_dssp HHHHHHHHH-----TTCCCCCC------CCHHHHHHHHHHH--------HTTSCSCCBCSCBSCTTTCCSCCB
T ss_pred HHHHHHHHH-----cCCCcccc------CCHHHHHHHHHHH--------HhccCCCccccCCCCCCCCCCCCC
Confidence 445566654 58876543 2466777776641 11245799953 2356699853
No 49
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=31.56 E-value=1.1e+02 Score=25.96 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=37.5
Q ss_pred CccchHHHHHHhhccCCChhhHHHHHHHcCc----eeChhcHHHHHHHHH
Q 002994 351 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQR 396 (860)
Q Consensus 351 ~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~----~vd~~~f~~~~~~~~ 396 (860)
..|+.+++-.++.+.|+|.+.+.++.++... .||.++|...|....
T Consensus 25 G~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 74 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLIS 74 (95)
T ss_dssp SEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH
Confidence 4799999999999999998888888776433 488899999986543
No 50
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=31.09 E-value=86 Score=28.86 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=37.7
Q ss_pred CccchHHHHHHhhccCCChhhHHHHHHHcCc----eeChhcHHHHHHHH
Q 002994 351 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 395 (860)
Q Consensus 351 ~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 395 (860)
..|+|+++..++-.-|+|.+....|-..... .+|.++|...|.--
T Consensus 47 G~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li 95 (121)
T 3fia_A 47 GFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLI 95 (121)
T ss_dssp TBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred CeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 4799999999999999999999888877543 57889999988653
No 51
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=29.56 E-value=28 Score=31.86 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
=|++-++-..+.|.+.||+|++++||++.+
T Consensus 74 qK~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 74 TKKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 366777888888999999999999998865
No 52
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=28.46 E-value=31 Score=31.65 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
=|++-++-..+.|.+.||+|++++||++.+
T Consensus 80 qK~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 80 QKVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 377778888889999999999999998865
No 53
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=28.27 E-value=23 Score=37.86 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=49.9
Q ss_pred cccccccCcccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCC
Q 002994 42 TFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 120 (860)
Q Consensus 42 TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l-~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~ 120 (860)
.+|.|.|...|.-|- +.+.-+++=+.+..|++++.+ |+=.+....-..+-+.+.+|+|++++. |.+...
T Consensus 209 ~~~~~~g~~v~~~~~--~~~~~~i~~~l~~~gl~~~did~~v~Hq~~~~i~~~~~~~lgl~~ek~~--------~~l~~~ 278 (323)
T 3il3_A 209 GYIEMQGNETFKLAV--RELSNVVEETLLANNLDKKDLDWLVPHQANLRIITATAKKLEMDMSQVV--------VTLDKY 278 (323)
T ss_dssp SCCEECHHHHHHHHH--HHHHHHHHHHHHTTTCCTTTCCEEEECCSCHHHHHHHHHHTTCCGGGBC--------CCHHHH
T ss_pred CcEEEcCHHHHHHHH--HHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHcCcCHHHhh--------ccHhhc
Confidence 467888876664221 223333443445679999888 665667777777777788999999873 233445
Q ss_pred CCCCCce
Q 002994 121 GPCGPCS 127 (860)
Q Consensus 121 GpcGpcs 127 (860)
|+||.+|
T Consensus 279 GNt~sas 285 (323)
T 3il3_A 279 ANNSAAT 285 (323)
T ss_dssp CBCGGGH
T ss_pred CchHHHH
Confidence 8888776
No 54
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.56 E-value=1e+02 Score=26.70 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=37.4
Q ss_pred CccchHHHHHHhhccCCChhhHHHHHHHcCc----eeChhcHHHHHHHH
Q 002994 351 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 395 (860)
Q Consensus 351 ~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 395 (860)
..|+.+++..+..+.|+|-+.+.+|.++... .||.++|...|...
T Consensus 26 G~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 26 GRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 4799999999999999999888888887433 48889999988643
No 55
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=27.18 E-value=35 Score=27.90 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 17 K~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 17 KAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 66777777888889999999999998754
No 56
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.30 E-value=92 Score=24.51 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 704 TRVEGLLEDLRTARNEVANLRAKAAVYKA 732 (860)
Q Consensus 704 ~~v~~l~~e~k~l~k~~~~l~~~l~~~~a 732 (860)
.-++.|+.++.+|+.++..|++++....+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888877777665543
No 57
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=25.52 E-value=1.1e+02 Score=25.64 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=36.7
Q ss_pred CccchHHHHHHhhccCCChhhHHHHHHHcCc----eeChhcHHHHHHHH
Q 002994 351 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 395 (860)
Q Consensus 351 ~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 395 (860)
..|+.+++-.+..+.|+|.+-+.++.++... .||.++|...|...
T Consensus 24 G~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~ 72 (92)
T 1fi6_A 24 GFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLV 72 (92)
T ss_dssp CEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 4799999999999999998888888776433 48888999988654
No 58
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=25.46 E-value=98 Score=27.43 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=37.6
Q ss_pred CccchHHHHHHhhccCCChhhHHHHHHHcCc----eeChhcHHHHHHHH
Q 002994 351 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 395 (860)
Q Consensus 351 ~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 395 (860)
..|+.+++-.++-+.|++-+.+.+|.++... .||.++|...|...
T Consensus 37 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 37 SFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLI 85 (110)
T ss_dssp SEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 4799999999999999998888888887443 48889999998754
No 59
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=25.43 E-value=26 Score=38.24 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=36.7
Q ss_pred CCCccccccccCCCCccccCCCCCccccccccc-CcccCcccHHHHHHHHHHhhhcccC
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLG-NFSFGDYFKKEAIQWAWEFSTVEFG 73 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlG-n~sfgdYfK~eai~~awe~lt~~l~ 73 (860)
..|+=..-||.|.-|+ |.||..=|-||- -.+|.|| ++.++.+=+++...++
T Consensus 109 ~~rvyqIg~~FR~E~~-----~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 109 CGPVFQLCRSFRNEEM-----GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLD 160 (345)
T ss_dssp CCSEEEEEEEECCCCC-----BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEcceeCCCC-----cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHc
Confidence 4677788899999655 799999999985 3567775 5556665566555544
No 60
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=24.78 E-value=1.3e+02 Score=20.57 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 706 VEGLLEDLRTARNEVANLRAKAAVY 730 (860)
Q Consensus 706 v~~l~~e~k~l~k~~~~l~~~l~~~ 730 (860)
+..|.++...++|++..|+-+++..
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888877766543
No 61
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=24.41 E-value=39 Score=27.15 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 66677777888889999999999998864
No 62
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=24.24 E-value=22 Score=38.81 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=48.6
Q ss_pred ccccccCcccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCC
Q 002994 43 FFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 121 (860)
Q Consensus 43 fFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l-~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~G 121 (860)
+|.|.|...|.-+ -+.+.-+++=+.+..|++++.+ |+=.+....-..+-+.+.+|+|++|+. |.+...|
T Consensus 240 ~~~m~g~~v~~~~--~~~~~~~i~~~L~~~gl~~~did~~v~Hq~n~~i~~~~~~~lgl~~ek~~--------~~l~~~G 309 (359)
T 3h78_A 240 EFLMRGRPMFEHA--SQTLVRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFA--------VTVDRLG 309 (359)
T ss_dssp SCEECHHHHHHHH--HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHHTCCGGGBC--------CCHHHHC
T ss_pred ceEeccHHHHHHH--HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHhCcCHHHhh--------hhhhccc
Confidence 5778777555321 1223333433444679999988 665666776667777778899998873 3344568
Q ss_pred CCCCce
Q 002994 122 PCGPCS 127 (860)
Q Consensus 122 pcGpcs 127 (860)
+||.+|
T Consensus 310 Nt~sAs 315 (359)
T 3h78_A 310 NMASAS 315 (359)
T ss_dssp BCGGGH
T ss_pred chHHHH
Confidence 888876
No 63
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=24.09 E-value=28 Score=23.48 Aligned_cols=10 Identities=60% Similarity=1.461 Sum_probs=7.4
Q ss_pred CCCCCCCCce
Q 002994 118 GATGPCGPCS 127 (860)
Q Consensus 118 G~~GpcGpcs 127 (860)
|++||=|||-
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 6678888883
No 64
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=24.04 E-value=2.2e+02 Score=26.80 Aligned_cols=67 Identities=6% Similarity=-0.018 Sum_probs=35.9
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHHHhc--CCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHc
Q 002994 747 EIRVLVESMDDMDADSLKSAAEYLVDTL--QDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLC 819 (860)
Q Consensus 747 ~~~~~~~~~~~~d~~~L~~la~~l~~~~--~~~~vv~l~s~~~~~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~ 819 (860)
+..+++..++..+...+...+..+.++. .+ .++++.+ ..+.+ +.++....+. ...++.++.+..+.+
T Consensus 44 g~qi~VvtV~sl~g~~ie~yA~~l~~~wgG~n-gvLLlVa-~~dRk--i~vg~Gl~lt--Da~~~~I~~~~~p~f 112 (148)
T 2kpt_A 44 QKVIFVVFLSSFDGVDPETWTQQALQANGGGN-VLIYALA-PEERQ--YGIQGGTQWT--DAELDAANNAAFQAL 112 (148)
T ss_dssp CCEEEEEECSCCTTTCHHHHHHHHHHHHTCSS-EEEEEEE-GGGTE--EEEEECTTSC--HHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHhCCCC-cEEEEEE-eCCCE--EEeccCcccC--HHHHHHHHHhccchh
Confidence 4456666666655455556666665543 34 3666666 55555 3333332111 235667777665555
No 65
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=23.83 E-value=1.4e+02 Score=32.08 Aligned_cols=79 Identities=11% Similarity=0.036 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeecCC-CcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHH
Q 002994 763 LKSAAEYLVDTLQDPAAVVLGSCPDE-GKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLS 841 (860)
Q Consensus 763 L~~la~~l~~~~~~~~vv~l~s~~~~-~k~~~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQGgg~~~~~l~ 841 (860)
+..+++.+.+-.+-. +.+++....+ +++.+.+ .|.+ +++++++++.+ +| |||-+..|=+... ..++
T Consensus 258 ~~~~v~~ll~i~gv~-~~~~~~e~~~~~~i~vs~-RS~~----~~~v~~i~~~~---~g--gGGH~~aag~~~~--~~~~ 324 (343)
T 3dma_A 258 SEGFVNIPLSIKNVC-FSCFLREDTEKKMIKISL-RSVG----KFPCNRLAAEF---FN--GGGHLNASGGEFY--GTME 324 (343)
T ss_dssp TTTGGGGGGGSTTCC-EEEEEEECCCC--EEEEE-EESS----SCCHHHHHHHH---TS--CEECSSEEEEEEC--SCHH
T ss_pred HHHHHHHhcccCCEE-EEEEEEEecCCCEEEEEE-ecCC----CCCHHHHHHhC---CC--CCCcHHhCeeEEc--CCHH
Confidence 334566665543433 4444441222 5554443 3432 38888876542 43 5666655544443 4777
Q ss_pred HHHHHHHHHHHHh
Q 002994 842 IALEKARADLVSV 854 (860)
Q Consensus 842 ~al~~~~~~l~~~ 854 (860)
++.+.+.+.+++.
T Consensus 325 ~~~~~~~~~i~~~ 337 (343)
T 3dma_A 325 EAVKVFEQALEKY 337 (343)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777554
No 66
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.67 E-value=1.1e+02 Score=20.09 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002994 710 LEDLRTARNEVANLRAK 726 (860)
Q Consensus 710 ~~e~k~l~k~~~~l~~~ 726 (860)
-.++.+++.++.+|+++
T Consensus 7 ykeledlqerlrklrkk 23 (27)
T 3twe_A 7 YKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 67
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.35 E-value=1.7e+02 Score=25.48 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 679 EYINARDSYMKHLCSTL----KVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVY 730 (860)
Q Consensus 679 ~~~~~~~~~l~~l~~~l----~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~ 730 (860)
+||....++ +..++.. .....++..++..|..++..|+.++..|+.++...
T Consensus 15 ~Y~~rR~rN-N~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 15 EYKIRRERN-NIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655554 2222221 12357888899999999999999999998886643
No 68
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=23.09 E-value=49 Score=25.58 Aligned_cols=16 Identities=56% Similarity=0.887 Sum_probs=10.5
Q ss_pred HHHHHHHHHcCCCCCC
Q 002994 810 KFIGPIAKLCGGGGGG 825 (860)
Q Consensus 810 ~l~k~~~~~~gGkGGG 825 (860)
++..+.++++.|+|||
T Consensus 17 klaeeaaklleggggg 32 (62)
T 2i7u_A 17 KLAEEAAKLLEGGGGG 32 (62)
T ss_dssp HHHHHHHHHHHCSSCS
T ss_pred HHHHHHHHHHhcCCCC
Confidence 4566677777666655
No 69
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.92 E-value=59 Score=25.87 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=25.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 696 KVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAV 729 (860)
Q Consensus 696 ~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~ 729 (860)
|..++++.+-++.+.++...+.+++..|+.++..
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~ 52 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNE 52 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888888888888888777653
No 70
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=22.91 E-value=1.8e+02 Score=32.64 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=45.5
Q ss_pred CccccccccCCCCccccC-CCC--CcccccccccCcccCcc--cHHH---HHHHHHHhhhcccCCC--------CCceEE
Q 002994 18 RAATSQRCIRTNDVENVG-RTS--RHHTFFEMLGNFSFGDY--FKKE---AIQWAWEFSTVEFGLP--------ANRLWI 81 (860)
Q Consensus 18 r~~~~Q~CiR~nDl~~VG-~t~--rH~TfFeMlGn~sfgdY--fK~e---ai~~awe~lt~~l~l~--------~~~l~v 81 (860)
|+.-..+|.|- |.-| ..+ |=+- |.|.+-++|+.- -.+| .|.++++++.+.|||| .-++.+
T Consensus 151 rl~~~g~~fR~---E~~~~~~GL~R~Re-F~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l 226 (460)
T 3uh0_A 151 RFSDFSPLHRN---EASGALSGLTRLRK-FHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINF 226 (460)
T ss_dssp EEEECCEEECC---CCTTTCBTTTBCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEE
T ss_pred EEEEecCeeeC---CCCCCCCCceeeee-EEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccceEEEE
Confidence 67778889997 2222 123 4444 578888899752 2233 7889999997899999 555554
Q ss_pred EE----eCChHHHH
Q 002994 82 SV----YEDDDEAF 91 (860)
Q Consensus 82 t~----~~~D~e~~ 91 (860)
.- |-+|++++
T Consensus 227 ~t~pe~~~G~~~~w 240 (460)
T 3uh0_A 227 STRPDHFIGDLKVW 240 (460)
T ss_dssp ECCCSSCCSCHHHH
T ss_pred ccCCcccCCCHHHH
Confidence 33 23566654
No 71
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=22.90 E-value=25 Score=37.63 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=48.9
Q ss_pred ccccccCcccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCC
Q 002994 43 FFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 121 (860)
Q Consensus 43 fFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l-~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~G 121 (860)
+|.|.|...|.-+ .+++.-+++=+.+..|++++.+ |+=.+....-..+-+.+.+|+|++++. |.+...|
T Consensus 220 ~~~~~g~~v~~~~--~~~~~~~i~~~l~~~gl~~~did~~~~Hq~~~~i~~~~~~~lgl~~~~~~--------~~l~~~G 289 (333)
T 4dfe_A 220 FLHMDGQAVFKLA--VNVLEKVAVEALEKANLSAEQIDWLIPHQANIRIMQSTCRKLGLPQERMI--------VTVGEHG 289 (333)
T ss_dssp SCEECHHHHHHHH--HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHTTCCGGGBC--------CCHHHHC
T ss_pred ceeeccHHHHHHH--HHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHhCCCHHHhh--------hhHHhcC
Confidence 5778777665311 2233333333344579999887 666777777777777788999998873 2233457
Q ss_pred CCCCce
Q 002994 122 PCGPCS 127 (860)
Q Consensus 122 pcGpcs 127 (860)
+||.+|
T Consensus 290 Nt~sas 295 (333)
T 4dfe_A 290 NTSAAS 295 (333)
T ss_dssp BCGGGH
T ss_pred chHHHH
Confidence 888776
No 72
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=22.77 E-value=31 Score=38.72 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=25.7
Q ss_pred CccCcccccchHHHHHHHHhCCCCCcccccc
Q 002994 172 LKQKNIDTGLGLERIARILQKVPNNYETDLI 202 (860)
Q Consensus 172 L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f 202 (860)
+| ++---|+|+|||++++.|.+|.=|+=+|
T Consensus 391 ~P-P~~G~glGiDRLvmll~g~~~Irdvi~F 420 (429)
T 1wyd_A 391 MP-PHAGFGMGLARLMVMLTGIQSVKEIVPF 420 (429)
T ss_dssp CC-CEEEEEEEHHHHHHHHHCCCCGGGTSSS
T ss_pred CC-CceEEEEcHHHHHHHHcCCCcHHhEEec
Confidence 55 8888999999999999999998777444
No 73
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=22.71 E-value=30 Score=27.62 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 57 KKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 57 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 16 k~~L~~~it~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 16 VAALGEALTAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67777777888999999999999997754
No 74
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=22.43 E-value=32 Score=38.77 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=23.7
Q ss_pred CcccccchHHHHHHHHhCCCCCcccccc
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLI 202 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f 202 (860)
++=--|+|+|||++++-|.+|.=|+=+|
T Consensus 402 P~~G~GlGidRLvm~l~g~~~Irdvi~F 429 (438)
T 3nem_A 402 PHGGFGLGAERLIKQMLDLPNIREVILF 429 (438)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred CceEEEEhHHHHHHHHhCCCcHHHcccC
Confidence 5667899999999999999998777554
No 75
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.32 E-value=66 Score=25.59 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 700 EEVTTRVEGLLEDLRTARNEVANLRAKA 727 (860)
Q Consensus 700 ~~l~~~v~~l~~e~k~l~k~~~~l~~~l 727 (860)
+++.+.++.|.+++.+|+.++..|++++
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567778889999999999999887653
No 76
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=21.82 E-value=33 Score=38.43 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.6
Q ss_pred CccCcccccchHHHHHHHHhCCCCCccccccHH
Q 002994 172 LKQKNIDTGLGLERIARILQKVPNNYETDLIFP 204 (860)
Q Consensus 172 L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p 204 (860)
+| ++---|+|+|||++++-|.+|.=|+=+|..
T Consensus 384 ~P-PhgG~glGiDRLvm~l~g~~~Irdvi~FPr 415 (422)
T 1n9w_A 384 MP-PHGGFAIGAERLTQKLLGLPNVRYARAFPR 415 (422)
T ss_dssp CC-SEEEEEEEHHHHHHHHTTCSSGGGGCSCC-
T ss_pred CC-CceEEEEcHHHHHHHHhCCCcHHhEEecCC
Confidence 44 777889999999999999999988866654
No 77
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.69 E-value=2.7e+02 Score=23.58 Aligned_cols=45 Identities=9% Similarity=0.202 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 685 DSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAV 729 (860)
Q Consensus 685 ~~~l~~l~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~ 729 (860)
...|......|++-.++|..+|+.|-.+...++.++..+++-...
T Consensus 18 N~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r 62 (77)
T 2w83_C 18 NTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLK 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334456677788888999999999999999999999888765443
No 78
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=21.46 E-value=34 Score=38.73 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=23.2
Q ss_pred CcccccchHHHHHHHHhCCCCCcccccc
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLI 202 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f 202 (860)
++=--|+|+|||++++-|.+|.=|+=+|
T Consensus 420 P~gG~GlGidRLvm~ltg~~~Irdvi~F 447 (456)
T 3m4p_A 420 PHGGYGLGVERLVMWLLGEDHIRKVCLY 447 (456)
T ss_dssp CEEEEEEEHHHHHHHHHTCSCGGGGSSS
T ss_pred cccEEEEcHHHHHHHHcCCccHHHeecc
Confidence 4556799999999999999998777554
No 79
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=21.46 E-value=33 Score=39.52 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=34.4
Q ss_pred CCCccccccccCCCCccccCCCCCccccccccc-CcccCccc-----HHHHHHHHHHhhh
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLG-NFSFGDYF-----KKEAIQWAWEFST 69 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlG-n~sfgdYf-----K~eai~~awe~lt 69 (860)
..|+=..-+|.|.-++ + .||..=|-||= -.+|.||- -++-|.++|.-+.
T Consensus 244 ~~rVyeig~~FR~E~~---~--trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 244 IDRVYEIGRQFRNEGI---D--LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp CCEEEEEEEEECCSCC---B--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEcceeCCCC---C--CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4577778899999543 3 38999998886 47888873 3455666666544
No 80
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=20.99 E-value=35 Score=39.54 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCCccccccccCCCCccccCCCCCcccccccccCc-ccC-cc
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNF-SFG-DY 55 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~-sfg-dY 55 (860)
..|+-..-+|.|+-+. .|.||.+=|-||--. +|+ ||
T Consensus 310 ~~rVfeI~~~FR~E~~----~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 310 FRKVFEVGPVFRAENS----NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp CCEEEEEEEECCCSCC----CSSSCCSCEEEEEEEEECSSCT
T ss_pred cCcEEEEeeeEecCCC----CCCCcchhhhchhhhhhhhcCH
Confidence 4566677899998543 378999999999764 887 56
No 81
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.82 E-value=1.6e+02 Score=23.37 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 699 DEEVTTRVEGLLEDLRTARNEVANLRAKAAVY 730 (860)
Q Consensus 699 ~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~ 730 (860)
..+|...++.|..++..|+.++..|+.++...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888888888776543
No 82
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=20.67 E-value=36 Score=38.22 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=23.6
Q ss_pred CcccccchHHHHHHHHhCCCCCcccccc
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLI 202 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f 202 (860)
++==-|+|+|||++++-|.+|.=|+=+|
T Consensus 399 PhgG~glGiDRLvmll~g~~~Irdvi~F 426 (435)
T 2xgt_A 399 PHGGYGLGLERFICWLTNTNHIRDVCLY 426 (435)
T ss_dssp CEEEEEEEHHHHHHHHHTCSCGGGGSSS
T ss_pred CCceEEEhHHHHHHHHcCCCcHHhEecc
Confidence 5667799999999999999998777544
No 83
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=20.67 E-value=35 Score=39.14 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=24.0
Q ss_pred CcccccchHHHHHHHHhCCCCCcccccc
Q 002994 175 KNIDTGLGLERIARILQKVPNNYETDLI 202 (860)
Q Consensus 175 ~~iDtG~GlER~~~ilq~~~s~ydtd~f 202 (860)
++=--|+|+|||+++|-|.+|.=|+=+|
T Consensus 470 PhgG~glGiDRLvmlltg~~~IRdVi~F 497 (504)
T 1e1o_A 470 PTAGLGIGIDRMIMLFTNSHTIRDVILF 497 (504)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGTSSS
T ss_pred CceeEEEcHHHHHHHHhCCCcHHhEecc
Confidence 6677799999999999999998777554
No 84
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=20.64 E-value=35 Score=39.01 Aligned_cols=47 Identities=17% Similarity=0.393 Sum_probs=33.0
Q ss_pred CCCccccccccCCCCccccCCCCCccccccccc-CcccCcccHHHHHHHHHHhhh
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLG-NFSFGDYFKKEAIQWAWEFST 69 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlG-n~sfgdYfK~eai~~awe~lt 69 (860)
..|+=..-+|.|.-+++ .||..=|-||. -.+|.|| ++.+..+-+++.
T Consensus 242 ~~rVyeig~~FR~E~~~-----~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~ 289 (493)
T 3a74_A 242 LEKVYEIGRVFRNEGIS-----TRHNPEFTMLELYEAYADF--RDIMKLTENLIA 289 (493)
T ss_dssp CCEEEEEEEEECCCCCB-----TTBCSEEEEEEEEEETCCH--HHHHHHHHHHHH
T ss_pred cCceEEECccccCCCCC-----cccCCceeEEEEEecCCCH--HHHHHHHHHHHH
Confidence 45677778999996552 49999999988 4677786 445555555443
No 85
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=20.55 E-value=36 Score=39.30 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCCccccccccCCCCccccCCCCCcccccccccC-cccCccc-----HHHHHHHHHHhhh
Q 002994 16 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYF-----KKEAIQWAWEFST 69 (860)
Q Consensus 16 ~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn-~sfgdYf-----K~eai~~awe~lt 69 (860)
..|+-..-+|.|.-++ + .||..=|-||-- .+|.||- -++-|.++|.-+.
T Consensus 272 ~~rVyeIg~~FR~E~~---~--~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 326 (529)
T 4ex5_A 272 FERVFEINRNFRNEGV---S--PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDAL 326 (529)
T ss_dssp CSEEEEEEEEECCSCC---B--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeehheecCCC---C--CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4577778899999654 2 599999999765 5778873 3455666665443
No 86
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=20.49 E-value=1.1e+02 Score=35.32 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=33.7
Q ss_pred Cccc-cccccCCCCccc--cCCCCCcccccccccCcccCcc-----cHHHHH-HHHHHhhhcccCCC
Q 002994 18 RAAT-SQRCIRTNDVEN--VGRTSRHHTFFEMLGNFSFGDY-----FKKEAI-QWAWEFSTVEFGLP 75 (860)
Q Consensus 18 r~~~-~Q~CiR~nDl~~--VG~t~rH~TfFeMlGn~sfgdY-----fK~eai-~~awe~lt~~l~l~ 75 (860)
|++. .++|.|-= .. -|. .|=|- |+|..-++|++- +=++.+ .++++|+. .||||
T Consensus 346 rl~q~ig~~FR~E--pgs~~GL-~R~RE-F~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~-~LGLp 407 (522)
T 2cja_A 346 KVFDRSGTSHRYE--SGGIHGI-ERVDE-FHRIEIVWIGTKEEVLKCAEELHDRYMHIFND-ILDIE 407 (522)
T ss_dssp EEEECSSEEECCC--SSSCCCT-TSCSE-EEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH-TSCCC
T ss_pred eEEEEcCceEeCC--CCCCCCC-eEeEE-EEEeeEEEEeChHHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence 5667 78999985 22 222 23333 678888999841 223456 77777775 58888
No 87
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=20.38 E-value=36 Score=38.20 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCccccccccCCCCccccCCCCCcccccccccC-cccCcccHHHHHHHHHHhhhc
Q 002994 17 PRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTV 70 (860)
Q Consensus 17 ~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn-~sfgdYfK~eai~~awe~lt~ 70 (860)
.|+-..-+|.|.-+.+ ++||..=|-|+.- .+|.|| .|.+..+.+++..
T Consensus 201 ~rvf~ig~~FR~E~~~----~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 249 (434)
T 1x54_A 201 EKVWSLTPSFRAEKSR----TRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSY 249 (434)
T ss_dssp SEEEEEEEEECCCCCC----CSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred cceEEEecceecCCCC----CcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHH
Confidence 4777888999985432 5799988888764 455564 6666666666543
No 88
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.18 E-value=1.7e+02 Score=23.52 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 699 DEEVTTRVEGLLEDLRTARNEVANLRAKAAV 729 (860)
Q Consensus 699 ~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~ 729 (860)
..+|...++.|..++..|++++..|+.++..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888777654
No 89
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=20.14 E-value=67 Score=26.72 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=21.6
Q ss_pred ccchHH---HHHHhhccCCChhhHHHHHHHc
Q 002994 352 RLSGQD---AFLLYDTFGFPVEITKEVAEEH 379 (860)
Q Consensus 352 ~i~g~~---~f~LydTyGfP~dl~~~~a~e~ 379 (860)
.+|+-+ +-.++|.||||+|++.+.++..
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 455444 4688999999999999887763
No 90
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=20.06 E-value=49 Score=27.50 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002994 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 85 (860)
Q Consensus 56 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 85 (860)
-|++-++-..+.+.+.||+|++.++|.+.+
T Consensus 16 qK~~L~~~it~~l~~~lg~p~~~v~V~i~E 45 (76)
T 3ej9_A 16 QKRALSAGLLRVISEATGEPRENIFFVIRE 45 (76)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 466677777888888999999999997754
No 91
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=20.01 E-value=3.5e+02 Score=29.41 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=40.4
Q ss_pred CccccccccCCCCc-cccCCCCCcccccccccCcccCccc--H---HHHHHHHHHhhhcccCCCCCceEEE
Q 002994 18 RAATSQRCIRTNDV-ENVGRTSRHHTFFEMLGNFSFGDYF--K---KEAIQWAWEFSTVEFGLPANRLWIS 82 (860)
Q Consensus 18 r~~~~Q~CiR~nDl-~~VG~t~rH~TfFeMlGn~sfgdYf--K---~eai~~awe~lt~~l~l~~~~l~vt 82 (860)
|+.-.++|.|.--- +.-|.. |=+. |.|.+-++|++.- . +|.|..+++++. .|||++-++-+.
T Consensus 113 r~~~~g~~fR~E~~~p~~Gl~-R~re-F~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~-~lgl~~~~~~~~ 180 (401)
T 1evl_A 113 RMAEFGSCHRNEPSGSLHGLM-RVRG-FTQDDAHIFCTEEQIRDEVNGCIRLVYDMYS-TFGFEKIVVKLS 180 (401)
T ss_dssp EEEEEEEEECCCCGGGCBTTT-BCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-TTTCSCCEEEEE
T ss_pred hhccccceecCCCCccccccc-ccCc-EEecceEEeCCHHHHHHHHHHHHHHHHHHHH-HcCCCceEEEEe
Confidence 78888999997322 233422 3333 6688888998631 1 256888899986 699976555444
Done!