RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 002994
(860 letters)
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 1279 bits (3313), Expect = 0.0
Identities = 446/909 (49%), Positives = 588/909 (64%), Gaps = 80/909 (8%)
Query: 1 MLQFKPIFLGKV-----PRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFS 51
M QFKPIFLG R++PRA +Q+CIR ND+++VG+ + HHTFFEMLGN+S
Sbjct: 52 MNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 111
Query: 52 FGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDD------EAFEIWNKEVGVPVEHI 105
FGDYFKKEAI WAWE T +GLPA+RL+ + + D+ EA IW + P E +
Sbjct: 112 FGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIWLDYL--PEERV 169
Query: 106 KRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKD 165
G DNFW G TGPCGPCSEI+YD +R +D+ DD RFIE +NLVF+Q+N++
Sbjct: 170 LPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREA 229
Query: 166 DGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE------LANVSYAQ 219
DGSL+PL K++DTG+GLER+A ILQ P+NY+TDL PI E A A+
Sbjct: 230 DGSLKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAE 289
Query: 220 SNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRG 279
+DR ++ +++ DH+R + + ++DGV PSN GRGYV+RRL+RRAVR GRLL
Sbjct: 290 DDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLL-------L 342
Query: 280 NLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLAD 339
E F P++ E +ELS + +VK E+RI E + EEL F +TLE+G + + LA
Sbjct: 343 GAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAA 402
Query: 340 ALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQS 399
A + P LSG+DAFLLYDT+GFPV++T+ +AEE GV+VDM+GF+ ME R +S
Sbjct: 403 AKANGG-----PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERS 457
Query: 400 QAAHN-----AVKLSVDDSADLAEK--IPDTEFLGYDTLS-AKAIVESLLVNGKPVIKVS 451
+AAH A++L+ + ++ L ++ +FL YD LS +A+V+++L G V VS
Sbjct: 458 RAAHLKAGGGAIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVS 517
Query: 452 KGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTI 511
+G +V ++L++T FYAESGGQIGD G L + G AVVEV DV+K+ G +H GT+
Sbjct: 518 EGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGG-----AVVEVSDVQKA-GGFVLHIGTV 571
Query: 512 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFD 571
EG + VG V VD R+R +HTATHLL +ALK+V+G Q GSLVAF++LRFD
Sbjct: 572 TEGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFD 631
Query: 572 FNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKR-AGAIAMFGEKYGEQVRVV 630
F+ +P+ EL E+E L+N WIGDA ++ K M L DAKR G A+FGEKY + VRVV
Sbjct: 632 FSHGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVV 691
Query: 631 EVPGV-SMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMK 689
V GV SMELCGGTHV+NTAE AFK++SE+GIA GIRRI AV G A +E INA DS +
Sbjct: 692 SVGGVYSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLER 751
Query: 690 HLCSTLKV------------------------KDEEVTTRVEGLLEDLRTARNEVANLRA 725
L S LKV K EE+ RV L ++LR A+ E A LRA
Sbjct: 752 ELDSALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRA 811
Query: 726 KAAVYKASTISSKAFTVGTSNEIRVLVESMDD-MDADSLKSAAEYLVDTLQDPAAVVLGS 784
K AV KA+ ++SKA + G S VLV +D +DA +LK AAE ++ L DPAAVVL S
Sbjct: 812 KLAVAKATELASKALSAGKS----VLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSS 867
Query: 785 CPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIAL 844
++GKVSL+AA G+V G++AGK++G IAKLCGGGGGG+P FAQ GR E L AL
Sbjct: 868 DEEKGKVSLVAAVPPGVVKKGLKAGKWLGAIAKLCGGGGGGKPGFAQGQGRDAEKLDAAL 927
Query: 845 EKARADLVS 853
EKARA V+
Sbjct: 928 EKARAFAVA 936
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 1206 bits (3123), Expect = 0.0
Identities = 415/857 (48%), Positives = 575/857 (67%), Gaps = 36/857 (4%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEA 60
M+QFK FLG+ PRA TSQ+CIRTND+ENVG T+RHHTFFEMLGNFSFGDYFK+EA
Sbjct: 43 MVQFKDYFLGQEKPPYPRATTSQKCIRTNDLENVGYTARHHTFFEMLGNFSFGDYFKEEA 102
Query: 61 IQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 120
I+WAWE T GLP +L+++VYEDDDEA++IW KE+GVP E I R+G DNFW+ G T
Sbjct: 103 IEWAWELLTSVLGLPKEKLYVTVYEDDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMGDT 162
Query: 121 GPCGPCSEIYYDFHPDRGCS--DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNID 178
GPCGPCSEI+YD + D R+IE +NLVFMQ+N+ +DG+L PL +KNID
Sbjct: 163 GPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNID 222
Query: 179 TGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAI 238
TG+GLERIA +LQ V +NYETDL P+IK EL V Y +++ ++I DH+RA+
Sbjct: 223 TGMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGVKY-----EDDVSFRVIADHIRAV 277
Query: 239 VYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELST 298
+L++DGV PSN GRGYV+RR++RRAVR GRLLGIK FL + I+
Sbjct: 278 AFLIADGVLPSNEGRGYVLRRILRRAVRHGRLLGIKE--------PFLYKLVPVVIDEMG 329
Query: 299 HIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDA 358
++K ++ I + LK EE RF++TLERG KLL++ LA + LSG+DA
Sbjct: 330 DAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKLKAGKV-------LSGEDA 382
Query: 359 FLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAE 418
F LYDT+GFP+++T E+A E G++VD +GF+ ME QR +++AA K + +L +
Sbjct: 383 FKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAAR-KFKGDYNALEELLD 441
Query: 419 KIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGF 478
+ TEF+GYDTL A+A V +L V+G+ V G +VEV+L++TPFYAESGGQ+GD G
Sbjct: 442 DLA-TEFVGYDTLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGV 500
Query: 479 LYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHH 538
+ V EV D +K + VH+G + EG L+VG EV A VD + R+ +H
Sbjct: 501 IE-------DGGVFEVTDTQKPPNGLIVHRGKVEEGELKVGDEVTAEVDEERRRAIARNH 553
Query: 539 TATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDAN 598
+ATHLL AAL++V+G+ +QAGSLVA DRLRFDF+ L EL +IE L+N I +
Sbjct: 554 SATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIRENL 613
Query: 599 LLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIIS 658
++T+ M++++AK+ GA+A+FGEKYG++VRVV + S+ELCGGTHV+NT +I FKI+S
Sbjct: 614 PVETEEMSIEEAKKMGAMALFGEKYGDEVRVVSIGDFSIELCGGTHVSNTGDIGLFKIVS 673
Query: 659 EQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARN 718
E G+A+G+RRIEAV GEA +EY+N +++ +K L + LK K E+ RVE LLE+L+
Sbjct: 674 ESGVAAGVRRIEAVTGEAALEYLNEQEALLKELAALLKAKPSELPERVEALLEELKELEK 733
Query: 719 EVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPA 778
E+ L+AK A A + ++A V N ++VL ++ +DA +L++ A+ L D L
Sbjct: 734 ELEQLKAKLAAAAAGDLLAQAKEV---NGVKVLAAQVEGVDAKALRTLADDLKDKLGS-G 789
Query: 779 AVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPE 838
VVL + ++GKVSL+ A ++ + D G++AG + +AK+ GG GGGRP+ AQAGG+ P
Sbjct: 790 VVVLAT-VEDGKVSLVVAVTKDLTDKGLKAGDLVKELAKIVGGKGGGRPDMAQAGGKDPA 848
Query: 839 NLSIALEKARADLVSVL 855
L AL + L + L
Sbjct: 849 KLDEALAAVKEWLAAKL 865
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 1020 bits (2639), Expect = 0.0
Identities = 410/860 (47%), Positives = 559/860 (65%), Gaps = 32/860 (3%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEA 60
M+QFKP F G V RA TSQ+CIRTND++NVG T+RHHTFFEMLGNFSFGDYFK+EA
Sbjct: 47 MVQFKPYFTGGVTPPANRAVTSQKCIRTNDIDNVGYTARHHTFFEMLGNFSFGDYFKEEA 106
Query: 61 IQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 120
I++AWEF T GLP +L+++VYEDDDEA+ W K +G+P E I R+GA DNFW
Sbjct: 107 IEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFW-EMGD 165
Query: 121 GPCGPCSEIYYDFHPDRGCSDVDL--GDDTRFIEFYNLVFMQYNKKD-DGSLEPLKQKNI 177
GPCGPCSEI+YD + G D R++E +NLVFMQYN+ DG+ PL +KNI
Sbjct: 166 GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNI 225
Query: 178 DTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRA 237
DTG+GLERIA +LQ VP NY+TDL PIIK +L Y + + +++ ++I DH+R+
Sbjct: 226 DTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRS 285
Query: 238 IVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELS 297
+ ++++DGV PSN GRGYV+RR+IRRA+R G+LLGIK FL + + I+
Sbjct: 286 LAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKE--------PFLYKLVDTVIDEM 337
Query: 298 THIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQD 357
++K +E I E LK EE RF +TLERG KLL++ LA L G+D
Sbjct: 338 GDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKT-------LDGED 390
Query: 358 AFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLA 417
AF LYDT+GFPVE+T+E+AEE G+ VD GF+ ME QR +++A +S DL
Sbjct: 391 AFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARA-SAGSGEGAKESEDLE 449
Query: 418 --EKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGD 475
+K+P+TEFLGYD L + V L V+GK V ++++G +V V+L++TPFYAESGGQ+GD
Sbjct: 450 LIDKLPETEFLGYDDLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGD 509
Query: 476 YGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAK 535
G+++ G EV DV+K V VHKG + G L+VG EV A VD + R+R
Sbjct: 510 TGYIFGDGG-----GRFEVTDVQKVGNGVIVHKGKVESGELKVGDEVTAEVDEERRRRLM 564
Query: 536 VHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIG 595
+HTATHLL AAL+KV+G QAGSLV ++LRFDF+ ++ L EL+EIERL+N I
Sbjct: 565 RNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIR 624
Query: 596 DANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFK 655
+ ++T+ M LD+AK GA+A+FGEKYG++VRVVE+ S+ELCGGTHV+NT +I FK
Sbjct: 625 ENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIGDFSVELCGGTHVSNTGDIGLFK 684
Query: 656 IISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRT 715
IISE+GIA+G+RRIEAV GEA +EY+ ++ +K + S LKV E + +VE LLE+L+
Sbjct: 685 IISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKVPPELL-PKVERLLEELKE 743
Query: 716 ARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQ 775
E+ L+ K A + + + S A ++VL + +D D L+ A+ L L
Sbjct: 744 LEKELERLKKKLAAAELADLLSNAKAEEIGG-VKVLAKEVDGADMKELREIADDLKKKLG 802
Query: 776 DPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGR 835
V+ +GKVSL+ A S+ + D ++AG+ + +A + GG GGGRP+ AQ GG+
Sbjct: 803 SAVIVLASV--ADGKVSLVVAVSKDLTD-KVKAGELVKELAAIVGGKGGGRPDMAQGGGK 859
Query: 836 KPENLSIALEKARADLVSVL 855
PE L ALE + L
Sbjct: 860 DPEKLDEALELVIEWVKEKL 879
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 918 bits (2374), Expect = 0.0
Identities = 401/846 (47%), Positives = 533/846 (63%), Gaps = 44/846 (5%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEA 60
M QFKPIF G V R +Q CIR ND+ENVGRT+RHHTFFEMLGNFSFGDYFK+EA
Sbjct: 38 MAQFKPIFTGIVKPPSNRLVNAQPCIRLNDIENVGRTARHHTFFEMLGNFSFGDYFKEEA 97
Query: 61 IQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 120
I +AWE T GL RL+++VYEDD+EA+EIW K G+P E I R G DNFW+ G
Sbjct: 98 IAFAWELLTSVLGLDKERLYVTVYEDDEEAYEIWEK-HGIPAERIIRCGDKDNFWDMG-D 155
Query: 121 GPCGPCSEIYYD----FHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 176
GPCGPC+EIYYD G + ++ R++E +NLVFMQ+N+ DG+ PL +KN
Sbjct: 156 GPCGPCTEIYYDRGEFVGGKPGEPEFF-EENDRYVEVWNLVFMQFNRDPDGNYTPLPKKN 214
Query: 177 IDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLN--------L 228
IDTG+GLER +LQ VP NY+TD+ P+I+K E+ V Y +N L
Sbjct: 215 IDTGMGLERFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSL 274
Query: 229 KIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPS 288
++I DH RA+ ++L+DGV PSN GRGYV+RRLIRRA+R G+ LG+K AFL
Sbjct: 275 RVIADHTRALAFMLADGVVPSNEGRGYVLRRLIRRALRHGKKLGLKE--------AFLYK 326
Query: 289 IAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESG 348
+ IE+ ++K +++ + + L+ EE RF +TLERG +L +++L +
Sbjct: 327 LVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKKE---- 382
Query: 349 SVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKL 408
L G+DAF LYDT+GFPVE+TKE+AEE G++VD+ GF+ M QR +S+AA +
Sbjct: 383 ----LDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTISF 438
Query: 409 SVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAE 468
+ + A LA P TEFLGY+ L +A V L +GKPV + G V V+L++TPFYAE
Sbjct: 439 ELQEIA-LANVYPATEFLGYEDLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAE 497
Query: 469 SGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDP 528
SGGQIGD G+L V DV+K V H G + G L+VG +V A++D
Sbjct: 498 SGGQIGDTGYL------IANDGKFRVVDVQKP-NGVVFHFGEVEGGSLKVGDKVIAVIDE 550
Query: 529 KLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIER 588
K R R +H+ATHLL AAL+KV+G QAGSLV+ +LRFDF+ +R L ELE+IE
Sbjct: 551 KRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED 610
Query: 589 LINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNT 648
L+N I ++ M LD+AK GA A+FGEKYGE+VRVV V VS+ELCGGTHV NT
Sbjct: 611 LVNEQILANIPIKVIFMDLDEAKAKGAFALFGEKYGEKVRVVSVGDVSVELCGGTHVRNT 670
Query: 649 AEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEG 708
EI FKI+ E GIA+G+RRIEAV G A IEY+N ++ +K L LKV E+ ++E
Sbjct: 671 GEIGLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVTPNELPKKIER 730
Query: 709 LLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAE 768
E+ + + E+ +L+ K A K + KA T+ N ++VLVE +D D SLK+ A+
Sbjct: 731 FFEEWKALQKELESLKLKIADQKIDELKDKAETI---NGVKVLVEVVDAKDMKSLKTMAD 787
Query: 769 YLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPN 828
L L A VL S GKV L+ S +++ GI+AG+ I IA++ GG GGGRP+
Sbjct: 788 RLKSKLGS-AIYVLAS-FANGKVKLVCGVSNDVLNKGIKAGELINQIAQVLGGKGGGRPD 845
Query: 829 FAQAGG 834
AQAGG
Sbjct: 846 LAQAGG 851
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 551
Score = 633 bits (1634), Expect = 0.0
Identities = 259/537 (48%), Positives = 341/537 (63%), Gaps = 32/537 (5%)
Query: 1 MLQFKPIFLGKVP-RQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDY 55
M QFKPIFLG RA SQ+CIR ND+ENVGRT+RHHTFFEMLGNFSFGDY
Sbjct: 38 MNQFKPIFLGGEAKPPYNRAVNSQKCIRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDY 97
Query: 56 FKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFW 115
FK+EAI++AWE T GL RL+++VYE DDEA IW K VG+P E I R G DNFW
Sbjct: 98 FKEEAIEFAWELLTKVLGLDPERLYVTVYEWDDEAGPIWEKIVGIPEERILRFGDKDNFW 157
Query: 116 NSGATGPCGPCSEIYYDFHPDRGCSDV---DLGDDTRFIEFYNLVFMQYNKKDDGSLEPL 172
G TGPCGPCSEI YD + G DD RF+E +NLVFMQ+N++ DG+L+PL
Sbjct: 158 EMGDTGPCGPCSEIDYDRGEEIGGWPSGGPPTADDDRFLEIWNLVFMQFNRESDGTLKPL 217
Query: 173 KQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIG 232
+K+IDTG+GLER+ +LQ V +NY+TDL P+I+ E++ Y + D T+ ++I
Sbjct: 218 PKKSIDTGMGLERLVAVLQNVRSNYDTDLFIPLIELIEEISGAKYY-TKDETDEAYRVIA 276
Query: 233 DHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEK 292
DH RA+ + ++DGV PSN GRGYV+RR++RRAVR + LG+K FL +
Sbjct: 277 DHTRALTFAIADGVVPSNEGRGYVLRRILRRAVRHAKKLGLK--------EPFLYKLVPT 328
Query: 293 AIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPR 352
IE ++K +E I E L+ EE RF +TLERG +LL++++
Sbjct: 329 VIEEMGDAYPELKEKEDTIQEILELEEERFAKTLERGLRLLERLIKSLKKSK-------T 381
Query: 353 LSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDD 412
L G+DAF LYDT+GFPV++T+E+AEE G++VDM GF+ M QR +S+ A +D
Sbjct: 382 LPGEDAFKLYDTYGFPVDLTQEIAEERGLTVDMPGFEKAMVEQRERSKQAVKEKGEELDV 441
Query: 413 SADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQ 472
SA L E +EFLGYD L A+A + +L +G+ V +V +G + V+L+RTPFYAESGGQ
Sbjct: 442 SA-LVELPATSEFLGYDDLEAEAKILALFKDGEFVAEVLEGQEGGVILDRTPFYAESGGQ 500
Query: 473 IGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPK 529
IGD G++ G V DV+K G V VHKG + G L+VG V A+VD
Sbjct: 501 IGDTGYIIGEGGE------FRVTDVQKY-GGVVVHKGKLESGSLKVGDTVIAVVDED 550
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 424 bits (1092), Expect = e-135
Identities = 271/895 (30%), Positives = 409/895 (45%), Gaps = 177/895 (19%)
Query: 22 SQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWI 81
SQ CIR ND++NVGRT RH T FEM+ + +F +Y KE + W E TVE+
Sbjct: 122 SQPCIRLNDIDNVGRTGRHLTSFEMMAHHAF-NYPDKE-VYWKDE--TVEY--------- 168
Query: 82 SVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF----WNSGATGPCGPCSEIYYDFHPDR 137
FE + KE+G+ E I F W G G GPC E+ R
Sbjct: 169 --------CFEFFTKELGIDPEEI-------TFKESWWEGG--GNAGPCFEVLV-----R 206
Query: 138 GCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNY 197
G +E LVFMQY KKD + K +DTG GLERIA Q P Y
Sbjct: 207 G------------LELATLVFMQY-KKDGNRYVEMPLKIVDTGYGLERIAWASQGTPTAY 253
Query: 198 ETDLIFP------------------IIKKASELA-----------NVSYAQSNDRTNLNL 228
+ IF I+ +A+ LA + + +++
Sbjct: 254 DA--IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLGIDV 311
Query: 229 K-------------IIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKG 275
+ I DH R + ++L DG+ PSN+G GY+ R +IRR +R LG+
Sbjct: 312 EELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLLDELGLDV 371
Query: 276 DGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQ 335
L + + I+ ++K IL+ + EE ++ +TLERG++++++
Sbjct: 372 P---------LSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRETLERGKRIVER 422
Query: 336 MLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMEN- 394
+ ++ +P D LYD+ G P EI KE+A++ GV V++ +N
Sbjct: 423 LA-------KKKEEIPL---DDLIELYDSHGIPPEIVKEIAKKKGVEVEVP------DNF 466
Query: 395 ----QRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPV 447
R +A + V+ + + +P+TE L Y+ +A V L V V
Sbjct: 467 YSLVAERHEKAEEEEEEPVVE--EERLKDLPETEKLFYEDPYMREFEAKV--LGVIDNYV 522
Query: 448 IKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVH 507
+ L++T FY E GGQ D G L + G +V DV+K +G V VH
Sbjct: 523 V-----------LDQTAFYPEGGGQPADTGVL-IVDGK-----GYKVVDVQK-VGGVIVH 564
Query: 508 KGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDR 567
+ + G EV +D + R R HHTATH++ AA +KV+G QAG+ D+
Sbjct: 565 V--LEGEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDK 622
Query: 568 LRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEK----- 622
R D ++ + E++EIERL N + + ++ + M R A +G +
Sbjct: 623 ARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWM-----DRNEAEQKYGFRLYQGG 677
Query: 623 --YGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEY 680
G+ +RVVE+ +E CGGTHV+NT EI KI+ + I G+ R+E AG+A +EY
Sbjct: 678 VPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEY 737
Query: 681 INARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAF 740
I + +K L V E++ VE E+ + + E+ LR + A AS + SKA
Sbjct: 738 IQELEDLLKEAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELLSKAE 797
Query: 741 TVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQG 800
VG ++V+VE +D D D L+ A L A VVLG G ++ +
Sbjct: 798 EVG---GVKVVVEEVDA-DEDELRKIANELAKE-GKVALVVLG----NGGGQIVVGVGED 848
Query: 801 IVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLVSVL 855
+ G+ AG+ + +AK+ GG GGG+P+ AQ GG P+ ALE A+ L L
Sbjct: 849 V---GVNAGEIVRELAKVLGGKGGGKPDLAQGGGPDPKKKEEALEAAKEVLKEAL 900
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 410 bits (1057), Expect = e-130
Identities = 265/892 (29%), Positives = 405/892 (45%), Gaps = 171/892 (19%)
Query: 22 SQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-----YFKKEAIQWAWEFSTVEFGLPA 76
SQ CIR ND++NVGRT RH T FEM+ + +F Y+K E +++ +EF
Sbjct: 119 SQPCIRLNDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-------- 170
Query: 77 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 136
+E+G+ E I ++ W G G GPC E+
Sbjct: 171 -------------------EELGIDPEEITYK---ESPWEGG--GNAGPCFEVIV----- 201
Query: 137 RGCSDVDLGDDTRFIEFYNLVFMQYNKK-------DDGSLEPLKQKNIDTGLGLERIARI 189
G +E LVFMQY + G + K +DTG GLER
Sbjct: 202 GG------------LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLERFVWA 249
Query: 190 LQKVPNNYETDLIFP-IIKKASELANVSYAQSN--------------------------- 221
Q P Y D IFP I+ K E A V
Sbjct: 250 SQGTPTAY--DAIFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRELRKKV 307
Query: 222 -DRTNLNLK-------------IIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRT 267
D+ ++++ I DH R + ++L DG+ PSN+ GY+ R +IRR +R
Sbjct: 308 ADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRL 367
Query: 268 GRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLE 327
R LG+ L + E +E I ++K + IL+ L EE ++ +TLE
Sbjct: 368 MRELGLDIP---------LSDLVEMQLEELKKIYPELKENKDYILDILDLEEEKYRETLE 418
Query: 328 RGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKG 387
RG ++++++L +T++ + D LYD+ G P EI KE+A E G V++
Sbjct: 419 RGRRIVERLL-----KTKK-----EIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIP- 467
Query: 388 FDIEMENQRRQSQAAHN---AVKLSVDDSADLAEKIPDTEFLGYD---TLSAKAIVESLL 441
+N H + D + A+ +P+T L Y+ +A V L
Sbjct: 468 -----DNFYSIVAERHEKEEKEEELPKDYEERAKDLPETRRLFYEDPTMREFEAKV--LG 520
Query: 442 VNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSL 501
V V+L++T FY E GGQ D G+L +T G V DV+K +
Sbjct: 521 VFDN-----------YVVLDQTAFYPEGGGQPADTGYL-ITNGGE-----YRVVDVQK-V 562
Query: 502 GSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGS 561
G V VHK + ++ G EV+ +D + R R HHTATH+L AA ++V+G+ QAG+
Sbjct: 563 GGVIVHK--VDGEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGA 620
Query: 562 LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF-- 619
D+ R D ++ + + E++EIERL N + + + K M ++A++ ++
Sbjct: 621 QKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQG 680
Query: 620 GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIE 679
G G ++RVVE+ ++ CGGTH NT EI KI+ + I G+ RIE AGEA +E
Sbjct: 681 GVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALE 740
Query: 680 YINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKA 739
YI + ++ LKV E++ V+ E+ + R E+ L+ K A K + S+A
Sbjct: 741 YIQELEDLLRESSDILKVPPEQLPETVKRFFEEWKEQRKEIERLKKKLAELKIYELISEA 800
Query: 740 FTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQ 799
+ + V+VE +D D D L+ AE L + VVL S G ++ + +
Sbjct: 801 ERI---GGVEVIVELVDA-DMDELQEIAEKLAEKG---LVVVLVS-GGGGNGRVVISSGE 852
Query: 800 GIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADL 851
G+ AG+ + IAK GGGGGG+P+ AQ GG N+ ALEK ++ L
Sbjct: 853 KA---GVDAGELVREIAKELGGGGGGKPDLAQGGGPDDLNVDEALEKIKSFL 901
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is
responsible for the attachment of alanine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its predicted structure and the presence of
three characteristic sequence motifs.
Length = 232
Score = 330 bits (848), Expect = e-107
Identities = 110/193 (56%), Positives = 140/193 (72%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEA 60
M QFKPIFLG+VP R SQ+CIR D++NVG+T RHHTFFEMLGNFSFGDYFK+EA
Sbjct: 40 MNQFKPIFLGEVPPPANRLVNSQKCIRAGDIDNVGKTGRHHTFFEMLGNFSFGDYFKEEA 99
Query: 61 IQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 120
I +AWE T GLP +RL++SV+E DDE IW ++G+P I+R+G DNFW G
Sbjct: 100 IAFAWELLTEVLGLPKDRLYVSVFEGDDEEEAIWWWKIGLPGIRIERIGFKDNFWEMGGN 159
Query: 121 GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTG 180
GPCGPCSEI+YD +R + + DD R++E +NLVFMQYN+ DG+ PL +K +DTG
Sbjct: 160 GPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTG 219
Query: 181 LGLERIARILQKV 193
+GLER+ +LQ V
Sbjct: 220 MGLERLVWVLQGV 232
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 332 bits (853), Expect = e-103
Identities = 152/408 (37%), Positives = 241/408 (59%), Gaps = 30/408 (7%)
Query: 6 PIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAW 65
P LG+ R Q+C+RT D++ VG S H TFFEMLGN+S G YFK+E+I++++
Sbjct: 47 PYLLGEPHPSGTRLVDVQKCLRTGDIDEVGDLS-HLTFFEMLGNWSLGAYFKEESIKYSF 105
Query: 66 EFSTVE--FGLPANRLWISVYEDDD------EAFEIWNKEVGVPVEHIKRMGADDNFWN- 116
EF T +P ++L+++V+E D+ E +W + +G+P + I + + N+W
Sbjct: 106 EFLTSPDYLNIPKDKLYVTVFEGDEEIPRDEETASVW-ESLGIPKDRIFYLSREHNWWGP 164
Query: 117 SGATGPCGPCSEIYYDFHPDRGCSDVDLGDDT-RFIEFYNLVFMQYNKKDDGSLEPLKQK 175
G TGPCGP +EI+ D + + ++ E +N VFMQYNK +DG+ E LK+K
Sbjct: 165 VGETGPCGPDTEIFVDTGKPKCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRK 224
Query: 176 NIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHL 235
+DTG+G+ER LQ + Y+T+ PIIK+ +++ Y Q N+ + +++II DH+
Sbjct: 225 CVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKIYGQ-NEEDDRSIRIIADHI 283
Query: 236 RAIVYLLSD--GVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKA 293
RA ++L D V PSN+G+GYV+RRLIRR++R + LGI E FL + +
Sbjct: 284 RAACFILGDPFVVLPSNVGQGYVLRRLIRRSIRHAKKLGI--------ESHFLADLVDSV 335
Query: 294 IELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRL 353
E+ ++ ++ I EEL +EE +F +TL +GE+ +++ + S S +P
Sbjct: 336 EEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIPNLGS----SKIIP-- 389
Query: 354 SGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQA 401
G AF LYDT+GFP EIT+E+A E+G +VD +GFD + ++ S+
Sbjct: 390 -GDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKK 436
Score = 161 bits (410), Expect = 8e-42
Identities = 62/135 (45%), Positives = 92/135 (68%)
Query: 538 HTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDA 597
HTATHLL AL+ V+G Q GS + +RLRFDF+ + D E++++E ++N I +
Sbjct: 457 HTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKND 516
Query: 598 NLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKII 657
++ +VM+L++A+ GA+A+FGEKY + V+V E+ G S E+CGG HV NT E+ FKI
Sbjct: 517 LSVKKEVMSLEEAREKGAMALFGEKYEDIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQ 576
Query: 658 SEQGIASGIRRIEAV 672
EQ +SG+RRI A+
Sbjct: 577 KEQSSSSGVRRIRAI 591
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 114 bits (288), Expect = 1e-28
Identities = 74/236 (31%), Positives = 107/236 (45%), Gaps = 16/236 (6%)
Query: 449 KVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHK 508
V D E++L+RT FY GGQ GD G L V K G VH
Sbjct: 18 TVVDVEDNEIVLDRTIFYPTGGGQPGDTGTLI-----WAGGEYVVEDVTKD--GEEIVHV 70
Query: 509 GTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRL 568
L+VG +V+ +D + R R HTA HLL A L KV G T G + D
Sbjct: 71 LAEHAK-LKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYGALT--TGFEIGEDYA 127
Query: 569 RFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDA-KRAGAIAMFGEKYGE-- 625
R DF+ + E+EE+E L N + + + + ++A K G + + + +
Sbjct: 128 RIDFDG--EDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVE 185
Query: 626 -QVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEY 680
++R+VE+ + ++ CGGTHV NT EI KI+ + G RR+ GE Y
Sbjct: 186 GKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTEKKGKGNRRVYFTLGERASAY 241
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active form of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this SAD
domain (the second additional domain). The second
additional domain is comprised of a pair of
perpendicularly orientated antiparallel beta sheets, of
four and three strands, respectively, that surround a
central alpha helix that forms the core of the domain.
Length = 43
Score = 75.9 bits (188), Expect = 2e-17
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 627 VRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRI 669
VRVV + S+ELCGGTHV NT EI AFKI+S G G++RI
Sbjct: 1 VRVVSIGDFSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active from of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this domain
(the second additional domain). The second additional
domain is comprised of a pair of perpendicularly
orientated antiparallel beta sheets, of four and three
strands, respectively, that surround a central alpha
helix that forms the core of the domain.
Length = 44
Score = 75.2 bits (186), Expect = 4e-17
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 627 VRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIE 670
VRVV + ++LCGGTHV NT EI AFKI+ G++RI
Sbjct: 1 VRVVRIGDFDVDLCGGTHVPNTGEIGAFKILKGDSKNKGLQRIY 44
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase.
Length = 223
Score = 57.8 bits (140), Expect = 3e-09
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 28/218 (12%)
Query: 455 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREG 514
+ ++L+RT F+ + GGQ D G + ++ G V+DV++ G V+ H G
Sbjct: 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGG----DTKFSVQDVRRKDGVVY-HYGVFEGS 56
Query: 515 ------VLEVGREVEAIVDPKLRQRAKVH---HTATHLLQAALKKVIGQETSQAGSLVAF 565
E G EV VD R K+H H+A HLL + + +G + G F
Sbjct: 57 NPESASPFEAGDEVTVTVDE---SRRKLHSRLHSAGHLLDVCMAR-VGLGPLEPGKGYHF 112
Query: 566 DRLRF-DFNFHRPLLDTE--LEEIERLINGWIGDANLLQTKVMALDDAKRA--GAIAMFG 620
F ++ P + + +E+E N I + + V+ D+A G++ +
Sbjct: 113 PDGPFVEYKGKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAELCGGSLPDYI 172
Query: 621 EKYGEQ--VRVVEVPGVSMELCGGTHVNNTAEIRAFKI 656
K V++ + PG CGGTHV + +EI + K+
Sbjct: 173 AKDSTPRIVKIGDSPGCP---CGGTHVADVSEITSVKV 207
>gnl|CDD|216955 pfam02272, DHHA1, DHHA1 domain. This domain is often found
adjacent to the DHH domain pfam01368 and is called DHHA1
for DHH associated domain. This domain is diagnostic of
DHH subfamily 1 members. This domains is also found in
alanyl tRNA synthetase , suggesting that this domain may
have an RNA binding function. The domain is about 60
residues long and contains a conserved GG motif.
Length = 69
Score = 51.5 bits (124), Expect = 2e-08
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 778 AAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKP 837
VVL + ++GKV + A S+G+ G G+ + +A+ GGGGGG P+ A AGG+ P
Sbjct: 2 KPVVLFA-EEDGKVKVSARSSKGLDVKG---GELLKEVAEKLGGGGGGHPDAAGAGGKDP 57
Query: 838 ENLSIALEKARA 849
L ALE +
Sbjct: 58 SKLEEALELLKE 69
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 45.2 bits (108), Expect = 1e-04
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 532 QRAKVHHTATHLLQAALKKV-------IGQETSQAGSLVAFDRLRFDFNFHRPLLDTELE 584
+ H+A H+L A++++ IG D +DF+ P +L+
Sbjct: 5 GLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIE--------DGFYYDFDVPEPFTPEDLK 56
Query: 585 EIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF-GEKYG-EQVRVVEVPGVSM----- 637
+IE+ + I L + + R A F E Y E + + G+++
Sbjct: 57 KIEKKMKK-IIKRGLPFERE----EVSREEAREEFANEPYKLELIDDIPEEGITIYDNGD 111
Query: 638 --ELCGGTHVNNTAEIRAFKIIS 658
+LC G HV NT I+AFK+ S
Sbjct: 112 FEDLCRGPHVPNTKFIKAFKLTS 134
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 38.6 bits (90), Expect = 0.007
Identities = 37/188 (19%), Positives = 54/188 (28%), Gaps = 41/188 (21%)
Query: 3 QFKPIFLGKVPRQVP-RAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAI 61
R++P R A R E R R F L FG+ ++ +
Sbjct: 61 PGLVRLFVSHIRKLPLRLAEIGPAFRN---EGGRRGLRRVREFTQLEGEVFGEDGEEASE 117
Query: 62 QWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 121
I + E+ A K V VE + G
Sbjct: 118 F---------------EELIELTEELLRAL--GIKLDIVFVE---------KTPGEFSPG 151
Query: 122 PCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK---NID 178
GP EI D RG +++G + + E L+ + I
Sbjct: 152 GAGPGFEIEVDHPEGRG---LEIGSGGYRQDE---QARAADLYFLD--EALEYRYPPTIG 203
Query: 179 TGLGLERI 186
GLGLER+
Sbjct: 204 FGLGLERL 211
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
Length = 639
Score = 38.2 bits (89), Expect = 0.021
Identities = 27/137 (19%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 538 HTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDA 597
H+A H+L A+K++ G G ++ + +D + + +L +IE+ + I +
Sbjct: 77 HSAAHILAQAVKRLYGDVNLGVGPVIE-NGFYYDMDLPSSVNVEDLRKIEKEMKKIINEN 135
Query: 598 NLLQTKVMALDDAKRAGAIAMFGEKY-------------GEQVRVVEVPGVSMELCGGTH 644
++ ++ ++A + +F E GE + + + G ++LC G H
Sbjct: 136 IKIERVEVSREEAAK-----LFQEMNDRLKLELLEAIPSGESITLYK-QGEFVDLCRGPH 189
Query: 645 VNNTAEIRAFKIISEQG 661
+ +T ++AF++ G
Sbjct: 190 LPSTGYLKAFQLTHVSG 206
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 35.8 bits (84), Expect = 0.097
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 50/149 (33%)
Query: 538 HTATHLLQAALK------KV-IGQETSQAGSLVAFDRLRF--DFNFHRPLLDTELEEIE- 587
H+A HLL A+K K+ IG G F DF+ RP +LE IE
Sbjct: 73 HSAAHLLAQAVKRLYPDAKLTIGPVIEN-G---------FYYDFDRERPFTPEDLEAIEK 122
Query: 588 ---RLINGWIGDANL-LQTKVMALDDAKRAGAIAMF---GEKYGEQVRVVE-VPG---VS 636
+I N ++ +V++ R AI +F GE Y +V ++E +P +S
Sbjct: 123 EMKEIIK-----ENYPIEREVVS-----REEAIELFKDRGEPY--KVELIEEIPEDEEIS 170
Query: 637 M-------ELCGGTHVNNTAEIRAFKIIS 658
+ +LC G HV +T +I+AFK++
Sbjct: 171 LYRQGEFVDLCRGPHVPSTGKIKAFKLLK 199
>gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil
and ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi, but
not mammalian cells. The bacterial enzymes, but not the
fungal enzymes, are related to the adenosine deaminases
(ADA). The bacterial enzymes are iron dependent and
hexameric.
Length = 398
Score = 32.2 bits (74), Expect = 1.1
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 40/123 (32%)
Query: 290 AEKAIELS---------THIDSDVKAREQRILEELK--REELR---------FVQTL--- 326
AE+A+EL+ TH+D D A + LE L REE F Q
Sbjct: 98 AERALELAIAHGTTAIRTHVDVDPAAG-LKALEALLELREEWADLIDLQIVAFPQHGLLS 156
Query: 327 -ERGEKLLD---QMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVS 382
GE+L+ +M AD + G +P + ++ E+A+EHG+
Sbjct: 157 TPGGEELMREALKMGADVV------GGIPPAEIDEDGEES------LDTLFELAQEHGLD 204
Query: 383 VDM 385
+D+
Sbjct: 205 IDL 207
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 32.8 bits (75), Expect = 1.1
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 701 EVTTRVEGLLEDLRTARNEVANLRAKAAVY-----KASTISSKAFTVGTSNEIRVL---- 751
EV V +LE R + A+L AK ++ A+ ++ ++E+R +
Sbjct: 835 EVRDEVNKVLESARNGKLIGASLEAKVYLHASDASLAARLAELCGASNGADELRRIFITS 894
Query: 752 -VESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEG 789
VE + D ++ + ++ V +G +G
Sbjct: 895 QVEVVSSEDDETAACGSYTGEY-VEGAGRVWVGVSRADG 932
>gnl|CDD|131514 TIGR02461, osmo_MPG_phos, mannosyl-3-phosphoglycerate phosphatase.
Members of this family are mannosyl-3-phosphoglycerate
phosphatase (EC 3.1.3.70). It acts sequentially after
mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a
two-step pathway of biosynthesis of the compatible
solute mannosylglycerate, a typical osmolyte of
thermophiles.
Length = 225
Score = 31.7 bits (72), Expect = 1.4
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 426 LGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNR------TPFYAESGGQI 473
GY+ A+ +E L G P++ VS + E R PF E+GG I
Sbjct: 13 PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIVENGGAI 66
>gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase.
Length = 614
Score = 32.2 bits (73), Expect = 1.5
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 535 KVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWI 594
K+ HT H++ A++K+ G + + +DF+ PL D +L+ I++ ++ I
Sbjct: 45 KIRHTCAHVMAMAVQKLFPDAKVTIGPWIE-NGFYYDFDME-PLTDKDLKRIKKEMDRII 102
Query: 595 GDANLLQTKVMALDDAKRAGAIAMFGEKYG---------EQVRVVEVPGVSMELCGGTHV 645
L + ++ ++A++ I E Y E + + + +LC G HV
Sbjct: 103 SRNLPLVREEVSREEAQKR--IMAINEPYKLEILEGIKEEPITIYHIGEEWWDLCAGPHV 160
Query: 646 NNTAEI--RAFKIISEQG 661
T +I +A ++ S G
Sbjct: 161 ERTGKINKKAVELESVAG 178
>gnl|CDD|166304 PLN02663, PLN02663, hydroxycinnamoyl-CoA:shikimate/quinate
hydroxycinnamoyltransferase.
Length = 431
Score = 31.9 bits (72), Expect = 1.6
Identities = 34/98 (34%), Positives = 40/98 (40%), Gaps = 26/98 (26%)
Query: 758 MDADSLKSAAEYLVDTLQ-DPAAVVLGS----CPDEGKVSLIAAFSQGIVDLGIQAGKFI 812
MD D L+SA +YL LQ D +A+V G+ CP+ G S V L I F
Sbjct: 331 MDDDYLRSALDYL--ELQPDLSALVRGAHTFRCPNLGITSW--------VRLPIYDADF- 379
Query: 813 GPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARAD 850
G GRP F GG E LS L D
Sbjct: 380 ----------GWGRPIFMGPGGIAYEGLSFILPSPTND 407
>gnl|CDD|130550 TIGR01486, HAD-SF-IIB-MPGP, mannosyl-3-phosphoglycerate phosphatase
family. This small group of proteins is a member of the
IIB subfamily (TIGR01484) of the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
Several members of this family from thermophiles (and
from Dehalococcoides ethenogenes) are now known to act
as mannosyl-3-phosphoglycerate (MPG) phosphatase. In
these cases, the enzyme acts after MPG synthase to make
the compatible solute mannosylglycerate. We propose that
other mesophilic members of this family do not act as
mannosyl-3-phosphoglycerate phosphatase. A member of
this family is found in Escherichia coli, which appears
to lack MPG synthase. Mannosylglycerate is imported in
E. coli by phosphoenolpyruvate-dependent transporter
(PMID:14645248), but it appears the phosphorylation is
not on the glycerate moiety, that the phosphorylated
import is degraded by an alpha-mannosidase from an
adjacent gene, and that E. coli would have no pathway to
obtain MPG.
Length = 256
Score = 31.2 bits (71), Expect = 1.7
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 427 GYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNR------TPFYAESGGQI 473
GYD AK ++E L G PVI + + EV R PF E+GG I
Sbjct: 15 GYDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLEDPFIVENGGAI 67
>gnl|CDD|177101 MTH00009, COX3, cytochrome c oxidase subunit III; Validated.
Length = 259
Score = 31.3 bits (71), Expect = 1.8
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 16/51 (31%)
Query: 34 VGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVY 84
+ RT HH FS G +F EA W W F V +WI +Y
Sbjct: 217 LLRTWSHH--------FSTGHHFGFEAAAWYWHFVDV--------VWIFLY 251
>gnl|CDD|235754 PRK06253, PRK06253, O-phosphoseryl-tRNA synthetase; Reviewed.
Length = 529
Score = 31.5 bits (72), Expect = 2.2
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 620 GEKYGEQVRV-VEVPGVSMELCGGTHVN-------------NTAEIRAFKIISEQGIASG 665
GE +G V+V V P + +L G +N +T E K + E+G+++G
Sbjct: 399 GEIFGRNVKVSVFEPEENTKLLGPAALNEVYVYDGNILGIPDTKEK--LKEVKEEGVSTG 456
Query: 666 IRRIEAVAGEA 676
IR I+A A +A
Sbjct: 457 IRYIDAFAAKA 467
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 30.8 bits (70), Expect = 2.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 365 FGFPVEITKEVAEEHGVSVDMKGFDIE 391
GF V++ K +A+E G+ V+ +
Sbjct: 23 TGFDVDLAKAIAKELGLKVEFVEVSFD 49
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents
the threonyl-tRNA synthetase found in most organisms.
This protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. Note that B.
subtilis has closely related isozymes thrS and thrZ. The
N-terminal regions are quite dissimilar between archaeal
and eubacterial forms, while some eukaryotic forms are
missing sequence there altogether. [Protein synthesis,
tRNA aminoacylation].
Length = 563
Score = 31.1 bits (71), Expect = 2.8
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 538 HTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDA 597
H+ HLL ALK++ G +V D +DF R +LE+IE+ +
Sbjct: 2 HSIAHLLAEALKQLYPDVKLAIGPVVE-DGFYYDFELDRSFTQEDLEKIEKDMKEIAKKN 60
Query: 598 NLLQTKVMALDDAKRAGAIAMFGEKY----------GEQVRVVEVPGVSMELCGGTHVNN 647
+ ++L++A A + E Y G + ++LC G H+ N
Sbjct: 61 YPVAKLSVSLEEALEAFKV---LEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPN 117
Query: 648 TAEIRAFK 655
T+ I+AFK
Sbjct: 118 TSFIKAFK 125
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 30.6 bits (69), Expect = 3.8
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 292 KAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRE 346
I +DS+ L+ELK+EE R + LE EK D L L +E
Sbjct: 60 VEISNYEALDSE--------LDELKKEEERLLDELEELEK-EDDDLDGELVELQE 105
>gnl|CDD|203898 pfam08281, Sigma70_r4_2, Sigma-70, region 4. Region 4 of sigma-70
like sigma-factors are involved in binding to the -35
promoter element via a helix-turn-helix motif.
Length = 54
Score = 27.0 bits (61), Expect = 5.2
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 356 QDAFLLYDTFGFPVEITKEVAEEHGVSV 383
++ FLL G E+AE G+S
Sbjct: 16 REVFLLRYLEGLS---YAEIAELLGISE 40
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 29.8 bits (68), Expect = 5.3
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 514 GVLEVGREVEAIVDPKLRQRAKVHHTATHLLQ----AALKKVIGQETSQAGSL---VAFD 566
G+ V RE + +LRQRA + A LL + + QAG A
Sbjct: 114 GLGIVVREWRRLR--RLRQRAHLRDEARALLHSHDVGEARAFCEKLAKQAGIPQLHPALQ 171
Query: 567 RLR 569
R +
Sbjct: 172 RWQ 174
>gnl|CDD|217998 pfam04266, ASCH, ASCH domain. The ASCH domain adopts a beta-barrel
fold similar to the pfam01472 domain. It is thought to
function as an RNA-binding domain during coactivation,
RNA-processing and possibly during prokaryotic
translation regulation.
Length = 104
Score = 28.1 bits (63), Expect = 6.0
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 438 ESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDV 497
L+++GK K E L P Q+GD L+ G + V+EV DV
Sbjct: 8 ADLILSGK---KT-----AEYRLWDEPLP-----QVGDLLILFELNGGGRPVGVIEVTDV 54
Query: 498 KK 499
+
Sbjct: 55 EI 56
>gnl|CDD|226292 COG3769, COG3769, Predicted hydrolase (HAD superfamily) [General
function prediction only].
Length = 274
Score = 29.8 bits (67), Expect = 6.4
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 427 GYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVL-------LNRTPFYAESGGQI 473
Y+ A ++ L G PVI S + E+L + P AE+G I
Sbjct: 22 SYEWQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAI 75
>gnl|CDD|176508 cd08565, GDPD_pAtGDE_like, Glycerophosphodiester phosphodiesterase
domain of putative Agrobacterium tumefaciens
glycerophosphodiester phosphodiesterase and similar
proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in putative Agrobacterium tumefaciens
glycerophosphodiester phosphodiesterase (pAtGDE, EC
3.1.4.46) and its uncharacterized homologs. Members in
this family show high sequence similarity to Escherichia
coli GP-GDE, which catalyzes the degradation of
glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols.
Length = 235
Score = 29.3 bits (66), Expect = 6.8
Identities = 32/130 (24%), Positives = 44/130 (33%), Gaps = 3/130 (2%)
Query: 257 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELK 316
VR L + RL G+ LE L A +EL I +D L
Sbjct: 60 VRDLTLAERKALRLRDSFGEKIPTLE-EVLALFAPSGLELHVEIKTDADGTPYPGAAALA 118
Query: 317 REELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 376
LR LER +L L+ R+ V L D +L G +T
Sbjct: 119 AATLRRHGLLER--SVLTSFDPAVLTEVRKHPGVRTLGSVDEDMLERLGGELPFLTATAL 176
Query: 377 EEHGVSVDMK 386
+ H V+V+
Sbjct: 177 KAHIVAVEQS 186
>gnl|CDD|219866 pfam08494, DEAD_assoc, DEAD/H associated. This domain is found in
ATP-dependent helicases as well as a number of
hypothetical proteins together with the helicase
conserved C-terminal domain (pfam00270) and the
pfam00271 domain.
Length = 188
Score = 29.0 bits (66), Expect = 7.7
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 569 RFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAI---AMFGEKYGE 625
D L +E+E ++ + + L K + A+RAG I K
Sbjct: 67 PVDAPDLAELFSELPDELEDILEAALNRSELF--KRRFREVARRAGLILRRYPGKRKSLR 124
Query: 626 QVRV 629
Q R+
Sbjct: 125 QQRI 128
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.7 bits (67), Expect = 8.5
Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 25/195 (12%)
Query: 529 KLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIER 588
+LR++ + L+ L + + L + + L LEE+E
Sbjct: 706 ELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEE 765
Query: 589 LINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNT 648
+ L+ ++ L++ ++A + E+ E++ E
Sbjct: 766 ELESLEEALAKLKEEIEELEEKRQALQEEL--EELEEELEEAE--------------RRL 809
Query: 649 AEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEG 708
+ EQ + IE E E D + L EE+ +E
Sbjct: 810 DALERELESLEQRRERLEQEIEE-LEEEIEELEEKLDELEEEL--------EELEKELEE 860
Query: 709 LLEDLRTARNEVANL 723
L E+L E L
Sbjct: 861 LKEELEELEAEKEEL 875
>gnl|CDD|234459 TIGR04082, rSAM_for_selen, selenobiotic family peptide radical SAM
maturase. Members of this protein family are radical
SAM (rSAM) enzymes similar in sequence to others with
known or postulated roles in peptide modification, and
regularly found adjacent to members of the GSU_1558
peptide family described by model TIGR04081. GSU_1558
and several other members of that family appear to be
selenoproteins, hence the term selenobiotic.
Length = 516
Score = 29.3 bits (66), Expect = 9.6
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 205 IIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRA 264
++ K V ++ L LKI+ + + L GV P + RL+ A
Sbjct: 110 LVWKDPGTGRVRVEPADQNDLLALKIVAEGIPPEEAALEAGVAP------GTIDRLLDHA 163
Query: 265 VRTGRLL 271
VR G LL
Sbjct: 164 VRKGLLL 170
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.387
Gapped
Lambda K H
0.267 0.0906 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,778,331
Number of extensions: 4637211
Number of successful extensions: 5110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5012
Number of HSP's successfully gapped: 70
Length of query: 860
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 755
Effective length of database: 6,280,432
Effective search space: 4741726160
Effective search space used: 4741726160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.7 bits)