RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002994
(860 letters)
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
aeolicus [TaxId: 63363]}
Length = 236
Score = 240 bits (614), Expect = 3e-74
Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 11/201 (5%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYF 56
M+ FK +FLG R RA + Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYF
Sbjct: 43 MVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYF 102
Query: 57 KKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWN 116
KKEAI++AWEF T LP +L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW
Sbjct: 103 KKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQ 162
Query: 117 SGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 176
G GPCGP SEIY D + + R++E +NLVFMQYN+ ++G L PL N
Sbjct: 163 MGDVGPCGPSSEIYVDRGEEYEGDE-------RYLEIWNLVFMQYNRDENGVLTPLPHPN 215
Query: 177 IDTGLGLERIARILQKVPNNY 197
IDTG+GLERIA +LQ +N+
Sbjct: 216 IDTGMGLERIASVLQGKNSNF 236
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 168 bits (425), Expect = 4e-48
Identities = 79/235 (33%), Positives = 133/235 (56%), Gaps = 15/235 (6%)
Query: 198 ETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVV 257
E D+IFP+I+ E++ Y + T++ L++I DHLRAI + +SDGV PSN GRGYV+
Sbjct: 1 EIDIIFPLIQFGEEVSGKKYGE-KFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVI 59
Query: 258 RRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKR 317
RR++RRA+R G LGI+ FL + +++ +++ + + +K
Sbjct: 60 RRILRRAMRFGYKLGIE--------NPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKG 111
Query: 318 EELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAE 377
EE RF++TL+ G + + +++ AL R++ SG++ F YDT+GFPV++ E+A
Sbjct: 112 EEKRFIKTLKAGMEYIQEVIQKALEEGRKTL-----SGKEVFTAYDTYGFPVDLIDEIAR 166
Query: 378 EHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDS-ADLAEKIPDTEFLGYDTL 431
E G+ +D++GF E+E QR +++ V + L E + F+G L
Sbjct: 167 EKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKTSAFVGAAAL 221
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 113 bits (284), Expect = 3e-30
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 21/147 (14%)
Query: 527 DPKLRQRAKVHHTATHLLQAALKKVIG-QETSQAGSLVAFDRLRFDFNFHRPLLDTELEE 585
D R + HT HLL+ L +V+G GS ++ ++ R+D + L E+
Sbjct: 1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNK-YKEQ 59
Query: 586 IERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHV 645
I L N ++ G + ++ + R ++ + CGGTHV
Sbjct: 60 IISLFNKYV----------------DEGGEVKIW---WEGDRRYTQIRDFEVIPCGGTHV 100
Query: 646 NNTAEIRAFKIISEQGIASGIRRIEAV 672
+ EI K + I G +R+E
Sbjct: 101 KDIKEIGHIKKLKRSSIGRGKQRLEMW 127
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 105 bits (263), Expect = 3e-27
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 537 HHTATHLLQAALKKVIGQETSQAGS-LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIG 595
H+A H+++ A+ KV+G E S V ++ F R D E+ EIERL N +
Sbjct: 8 THSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVK 67
Query: 596 DANLLQTKVMALDDAKRAGAIAMFGEKYG---------EQVRVVEVPGVSMELCGGTHVN 646
+ ++ + ++A++ MFGE ++VV + ++ C H
Sbjct: 68 ENAPIKIYELPREEAEK-----MFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTK 122
Query: 647 NTAEIRAFKIIS-EQGIASGIRRIE 670
T EI KI + G+ I
Sbjct: 123 TTGEIGPIKIRKVRFRKSKGLLEIH 147
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 83.3 bits (205), Expect = 6e-19
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 538 HTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDA 597
H+ HL+ A+K++ G V +DF+ + + + E+IE+ + + +
Sbjct: 13 HSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNEN 71
Query: 598 NLLQTKVMALDDAKRA-----GAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIR 652
++ KV++ D+AK + + ++ + G +LC G HV +TA+I+
Sbjct: 72 MKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIK 131
Query: 653 AFKIISEQGI----ASGIRRIEAVAGEAF 677
FK++S G S + ++ + G AF
Sbjct: 132 EFKLLSTAGAYWRGDSNNKMLQRIYGTAF 160
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 87
Score = 61.8 bits (150), Expect = 2e-12
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 449 KVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHK 508
+V + D +LL++T FY GGQ D G + VEV DV K H
Sbjct: 21 RVLEIRDNAILLDQTIFYPTGGGQPHDRGTI----------NGVEVLDVYKDEEGNVWHV 70
Query: 509 GTIREGVLEVGREVEAIV 526
+VG EVE +
Sbjct: 71 V-KEPEKFKVGDEVELKI 87
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 58.7 bits (141), Expect = 1e-10
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 9/132 (6%)
Query: 538 HTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDA 597
H+ HLL A+K+ + T A V + +D + R L ++E +E+ ++
Sbjct: 11 HSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKN 69
Query: 598 NLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVE--------VPGVSMELCGGTHVNNTA 649
+ K ++ +A+ A K + +++C G HV N
Sbjct: 70 YDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMR 129
Query: 650 EIRAFKIISEQG 661
FK++ G
Sbjct: 130 FCHHFKLMKTAG 141
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 30.9 bits (69), Expect = 0.63
Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 18/201 (8%)
Query: 44 FEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVE 103
+ + GD+ + + + + L W ++ D FE + E G+
Sbjct: 150 WLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRDESKWAPLWVIDFPMFE-DDGEGGLTAM 208
Query: 104 HIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDR----GCSDVDLGDDT-RFIEFYNLVF 158
H D P + Y G + GD +
Sbjct: 209 HHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINE 268
Query: 159 MQYNKKDDGSLEPLKQKNIDT---GLGLERIARILQKVPNNYETDLIFPIIKKASEL--- 212
+ +K L+ LK GL+R+ +L N + + FP A+ L
Sbjct: 269 EEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDV-IAFPKTTAAACLMTE 327
Query: 213 --ANVSYAQSNDRTNLNLKII 231
+ + + L+++++
Sbjct: 328 APSFANPTALAE---LSIQVV 345
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 264
Score = 30.1 bits (67), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 244 DGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAF 285
+ P + +GY VR +I + V G L +K NL AF
Sbjct: 20 RDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAF 61
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 28.5 bits (63), Expect = 3.0
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 180 GLGLERIARILQKVPN---NYETDLIF 203
GLG+ER+A + +P+ + L F
Sbjct: 232 GLGVERLAMLRYGIPDIRYFFGGRLKF 258
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 27.5 bits (61), Expect = 4.4
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 687 YMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNE-VANLRAKAAVYKA 732
Y + + L EE+ R+ L LR +L+ + AVY+A
Sbjct: 97 YRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQA 143
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 26.6 bits (58), Expect = 5.9
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 502 GSVFVHKGTIREGVLEVGREVEA----IVDPKLRQRAKVHHTATHLLQAALKKVIGQETS 557
V G+I +G L+VG E+E + R + + T LQA + E +
Sbjct: 29 LVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQF---VEEA 85
Query: 558 QAGSLVAFDRLRFDFNFHR 576
G LV + D +
Sbjct: 86 YPGGLVGV-GTKLDPYLTK 103
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR,
N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Length = 100
Score = 26.0 bits (57), Expect = 8.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 236 RAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEG 283
RA+ L S+G+ S G VV + RL ++ +G G
Sbjct: 52 RALAVLKSEGLVSSRGALGTVVEKNPIVITGADRLKRMEKNGMRYAPG 99
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 299
Score = 27.1 bits (59), Expect = 10.0
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 244 DGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGD 276
+ P N R Y + +I R L K
Sbjct: 22 YSMVPLNDKRAYDIYNVIARLFDNSELHEYKKG 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.387
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,183,133
Number of extensions: 157327
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 22
Length of query: 860
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 767
Effective length of database: 1,130,706
Effective search space: 867251502
Effective search space used: 867251502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)