Query 002996
Match_columns 860
No_of_seqs 339 out of 1512
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 14:57:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1077 Vesicle coat complex A 100.0 1E-107 2E-112 882.9 58.7 811 3-857 68-937 (938)
2 PTZ00429 beta-adaptin; Provisi 100.0 4E-105 9E-110 929.9 61.4 543 1-548 60-607 (746)
3 KOG1061 Vesicle coat complex A 100.0 6E-105 1E-109 884.9 45.2 689 1-768 41-734 (734)
4 KOG1060 Vesicle coat complex A 100.0 3.1E-95 7E-100 796.1 58.6 806 1-857 63-967 (968)
5 KOG1062 Vesicle coat complex A 100.0 6E-78 1.3E-82 665.1 50.0 495 2-508 63-599 (866)
6 PF01602 Adaptin_N: Adaptin N 100.0 5E-73 1.1E-77 666.0 39.1 481 1-489 34-524 (526)
7 COG5096 Vesicle coat complex, 100.0 1.2E-62 2.6E-67 559.1 35.9 529 1-541 47-624 (757)
8 KOG1078 Vesicle coat complex C 100.0 5.7E-59 1.2E-63 513.0 50.8 777 5-854 60-864 (865)
9 KOG1059 Vesicle coat complex A 100.0 3.9E-55 8.5E-60 477.1 36.2 474 3-488 66-576 (877)
10 KOG1058 Vesicle coat complex C 100.0 1.9E-46 4.1E-51 410.4 42.5 399 1-416 48-466 (948)
11 COG5240 SEC21 Vesicle coat com 100.0 1E-40 2.2E-45 355.1 44.0 779 6-844 62-885 (898)
12 PF02296 Alpha_adaptin_C: Alph 99.7 3.8E-17 8.1E-22 147.0 9.2 105 748-853 1-113 (113)
13 PF09066 B2-adapt-app_C: Beta2 99.5 4.3E-13 9.4E-18 123.0 11.1 111 748-859 1-114 (114)
14 PF01602 Adaptin_N: Adaptin N 99.4 3.5E-11 7.7E-16 141.7 24.1 381 81-476 42-431 (526)
15 PTZ00429 beta-adaptin; Provisi 99.1 7.1E-08 1.5E-12 114.6 34.2 332 49-394 35-379 (746)
16 PF14796 AP3B1_C: Clathrin-ada 99.1 4.7E-10 1E-14 104.3 12.0 85 632-716 56-145 (145)
17 PRK13800 putative oxidoreducta 99.0 3.7E-08 8E-13 122.1 27.1 271 48-370 623-894 (897)
18 PLN03200 cellulose synthase-in 99.0 1.4E-06 3.1E-11 111.3 39.9 471 10-498 145-732 (2102)
19 PRK09687 putative lyase; Provi 99.0 3.2E-08 6.8E-13 105.4 20.8 251 46-369 23-276 (280)
20 PRK13800 putative oxidoreducta 99.0 1.4E-07 3.1E-12 116.9 28.0 256 60-372 608-864 (897)
21 PLN03200 cellulose synthase-in 98.9 7.9E-07 1.7E-11 113.6 31.3 426 14-448 409-907 (2102)
22 PRK09687 putative lyase; Provi 98.9 6.1E-07 1.3E-11 95.6 24.9 221 13-266 27-249 (280)
23 PF12717 Cnd1: non-SMC mitotic 98.8 7.8E-08 1.7E-12 95.7 15.4 145 59-209 1-157 (178)
24 PF10508 Proteasom_PSMB: Prote 98.8 2.6E-05 5.7E-10 90.5 37.4 391 15-449 44-465 (503)
25 KOG2171 Karyopherin (importin) 98.8 0.00022 4.8E-09 85.5 42.7 516 9-539 4-604 (1075)
26 KOG2171 Karyopherin (importin) 98.6 0.00014 3.1E-09 87.0 37.0 423 51-482 9-497 (1075)
27 KOG1060 Vesicle coat complex A 98.6 4.1E-05 8.8E-10 87.4 31.0 382 52-452 41-461 (968)
28 PF10508 Proteasom_PSMB: Prote 98.6 1E-05 2.3E-10 93.8 24.8 308 11-320 79-440 (503)
29 KOG2023 Nuclear transport rece 98.5 2.2E-05 4.7E-10 88.0 24.4 376 41-452 85-508 (885)
30 KOG2023 Nuclear transport rece 98.5 6.4E-06 1.4E-10 92.1 20.0 403 64-492 376-821 (885)
31 KOG0212 Uncharacterized conser 98.5 0.00026 5.6E-09 78.4 31.7 358 14-375 5-406 (675)
32 smart00809 Alpha_adaptinC2 Ada 98.5 7.1E-07 1.5E-11 80.4 9.0 87 642-730 4-91 (104)
33 KOG1059 Vesicle coat complex A 98.3 0.00033 7.2E-09 79.6 28.0 337 5-358 104-462 (877)
34 PF02883 Alpha_adaptinC2: Adap 98.3 3.5E-06 7.5E-11 77.4 10.0 80 633-717 2-84 (115)
35 KOG0166 Karyopherin (importin) 98.3 0.00041 8.8E-09 77.9 27.4 300 10-340 67-395 (514)
36 KOG1058 Vesicle coat complex C 98.2 0.00027 5.8E-09 80.6 23.3 270 170-488 108-380 (948)
37 PF14764 SPG48: AP-5 complex s 98.2 0.0033 7.2E-08 69.8 30.5 129 368-500 290-455 (459)
38 KOG0213 Splicing factor 3b, su 98.1 0.0048 1E-07 70.5 30.7 435 47-489 477-1065(1172)
39 KOG1020 Sister chromatid cohes 98.1 0.01 2.2E-07 73.2 35.4 160 22-186 793-956 (1692)
40 KOG1062 Vesicle coat complex A 98.1 0.0025 5.5E-08 73.7 27.8 174 87-270 76-266 (866)
41 KOG0166 Karyopherin (importin) 98.0 0.00053 1.1E-08 77.0 21.6 259 9-268 109-394 (514)
42 PF14807 AP4E_app_platf: Adapt 97.9 0.00017 3.7E-09 63.6 12.2 101 751-859 2-104 (104)
43 PF13646 HEAT_2: HEAT repeats; 97.9 5.3E-05 1.2E-09 65.7 8.6 84 49-144 2-87 (88)
44 KOG2259 Uncharacterized conser 97.9 0.00068 1.5E-08 76.4 18.6 343 39-390 151-526 (823)
45 COG5181 HSH155 U2 snRNP splice 97.9 0.0028 6.1E-08 70.9 22.7 433 48-489 283-870 (975)
46 PF08752 COP-gamma_platf: Coat 97.8 2E-05 4.4E-10 74.4 5.2 111 635-748 29-148 (151)
47 KOG1824 TATA-binding protein-i 97.8 0.0095 2.1E-07 70.0 26.9 329 11-357 773-1152(1233)
48 PF05804 KAP: Kinesin-associat 97.7 0.014 3E-07 69.4 26.5 316 49-413 293-652 (708)
49 PF12717 Cnd1: non-SMC mitotic 97.6 0.00075 1.6E-08 67.2 12.8 89 251-339 1-93 (178)
50 KOG0213 Splicing factor 3b, su 97.6 0.15 3.2E-06 58.9 31.0 446 15-488 642-1138(1172)
51 KOG0212 Uncharacterized conser 97.5 0.13 2.9E-06 57.6 29.0 404 43-496 19-453 (675)
52 PF05918 API5: Apoptosis inhib 97.5 0.071 1.5E-06 61.3 28.0 133 10-147 24-160 (556)
53 KOG0915 Uncharacterized conser 97.5 0.1 2.3E-06 64.8 30.4 374 80-496 955-1352(1702)
54 KOG4224 Armadillo repeat prote 97.5 0.0035 7.7E-08 66.1 15.8 321 14-339 90-447 (550)
55 KOG0414 Chromosome condensatio 97.4 0.00073 1.6E-08 81.0 11.2 179 9-192 919-1104(1251)
56 COG5181 HSH155 U2 snRNP splice 97.4 0.2 4.3E-06 56.8 29.0 177 4-186 436-629 (975)
57 KOG1241 Karyopherin (importin) 97.4 0.5 1.1E-05 55.1 33.4 423 10-467 260-731 (859)
58 KOG1061 Vesicle coat complex A 97.3 0.026 5.6E-07 65.7 21.8 162 49-218 16-180 (734)
59 KOG2259 Uncharacterized conser 97.3 0.15 3.3E-06 58.2 26.3 405 43-488 118-550 (823)
60 cd00020 ARM Armadillo/beta-cat 97.3 0.0009 2E-08 61.3 7.8 106 82-187 8-117 (120)
61 TIGR02270 conserved hypothetic 97.3 0.014 3.1E-07 65.4 18.4 211 47-304 87-297 (410)
62 COG5096 Vesicle coat complex, 97.2 0.38 8.2E-06 57.3 30.2 162 48-218 20-186 (757)
63 PF04826 Arm_2: Armadillo-like 97.2 0.021 4.5E-07 59.9 17.9 225 84-329 15-253 (254)
64 KOG1241 Karyopherin (importin) 97.2 0.78 1.7E-05 53.6 32.6 410 38-463 82-543 (859)
65 cd00256 VATPase_H VATPase_H, r 97.2 0.054 1.2E-06 60.7 21.9 281 163-450 103-426 (429)
66 KOG1824 TATA-binding protein-i 97.2 0.21 4.5E-06 59.4 26.7 418 59-489 622-1096(1233)
67 PF04826 Arm_2: Armadillo-like 97.1 0.018 3.9E-07 60.3 16.5 163 57-224 24-203 (254)
68 COG1413 FOG: HEAT repeat [Ener 97.1 0.032 7E-07 61.6 19.6 108 10-134 44-151 (335)
69 cd00020 ARM Armadillo/beta-cat 97.0 0.0015 3.4E-08 59.7 6.8 102 47-148 8-119 (120)
70 KOG1242 Protein containing ada 97.0 0.78 1.7E-05 52.6 29.2 287 44-340 94-403 (569)
71 PF05804 KAP: Kinesin-associat 97.0 0.12 2.7E-06 61.6 23.8 361 124-496 254-657 (708)
72 PF12348 CLASP_N: CLASP N term 97.0 0.016 3.5E-07 60.1 14.8 181 89-272 15-211 (228)
73 PF13646 HEAT_2: HEAT repeats; 97.0 0.0045 9.8E-08 53.4 8.8 84 84-185 2-87 (88)
74 KOG1020 Sister chromatid cohes 97.0 2 4.2E-05 54.2 38.5 134 12-148 819-959 (1692)
75 KOG1242 Protein containing ada 96.9 0.25 5.4E-06 56.5 24.2 352 91-452 27-447 (569)
76 COG5215 KAP95 Karyopherin (imp 96.9 1 2.2E-05 50.9 27.5 108 10-117 322-444 (858)
77 COG1413 FOG: HEAT repeat [Ener 96.9 0.26 5.6E-06 54.4 23.9 219 46-328 43-263 (335)
78 COG5240 SEC21 Vesicle coat com 96.9 1.2 2.7E-05 50.3 29.4 413 47-485 66-512 (898)
79 TIGR02270 conserved hypothetic 96.9 0.13 2.9E-06 57.8 21.4 279 6-337 12-295 (410)
80 KOG1078 Vesicle coat complex C 96.8 1.2 2.5E-05 52.5 28.7 137 250-394 257-402 (865)
81 COG5215 KAP95 Karyopherin (imp 96.7 0.59 1.3E-05 52.7 24.5 431 11-467 222-731 (858)
82 KOG1943 Beta-tubulin folding c 96.7 2.4 5.3E-05 51.6 30.8 229 75-343 335-578 (1133)
83 PF12348 CLASP_N: CLASP N term 96.5 0.034 7.3E-07 57.7 12.7 130 19-151 17-162 (228)
84 KOG2274 Predicted importin 9 [ 96.5 1.9 4.1E-05 51.6 27.3 235 63-303 427-689 (1005)
85 KOG0211 Protein phosphatase 2A 96.4 1.7 3.8E-05 52.3 27.1 405 75-488 231-663 (759)
86 COG5098 Chromosome condensatio 96.4 0.4 8.6E-06 55.1 20.4 133 20-152 273-418 (1128)
87 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.02 4.4E-07 50.4 8.5 67 75-141 21-89 (97)
88 COG5064 SRP1 Karyopherin (impo 96.3 0.21 4.6E-06 52.7 16.9 217 48-267 159-398 (526)
89 COG5098 Chromosome condensatio 96.3 0.03 6.6E-07 63.7 11.6 173 11-190 893-1076(1128)
90 COG5064 SRP1 Karyopherin (impo 96.3 0.42 9.2E-06 50.5 18.7 288 11-337 73-397 (526)
91 KOG1077 Vesicle coat complex A 96.2 3.4 7.4E-05 48.1 35.6 347 27-391 61-452 (938)
92 KOG1240 Protein kinase contain 96.2 0.052 1.1E-06 65.8 13.5 201 8-218 506-716 (1431)
93 KOG4224 Armadillo repeat prote 96.2 0.56 1.2E-05 50.1 19.3 183 8-191 166-364 (550)
94 PF02985 HEAT: HEAT repeat; I 96.1 0.011 2.3E-07 40.1 4.2 30 82-111 1-30 (31)
95 PF13513 HEAT_EZ: HEAT-like re 96.0 0.018 3.9E-07 44.9 5.9 49 60-108 1-55 (55)
96 KOG0414 Chromosome condensatio 95.9 5.1 0.00011 49.5 27.7 147 6-152 267-431 (1251)
97 KOG0168 Putative ubiquitin fus 95.9 1 2.2E-05 53.3 21.1 165 48-214 169-351 (1051)
98 KOG1820 Microtubule-associated 95.8 0.22 4.7E-06 60.2 16.1 195 75-271 247-447 (815)
99 KOG1240 Protein kinase contain 95.7 1.7 3.7E-05 53.4 22.7 106 304-410 612-722 (1431)
100 PF05918 API5: Apoptosis inhib 95.7 1.2 2.6E-05 51.6 20.8 143 58-209 34-189 (556)
101 PF12830 Nipped-B_C: Sister ch 95.6 0.11 2.4E-06 52.0 11.3 102 48-150 10-123 (187)
102 PF13513 HEAT_EZ: HEAT-like re 95.5 0.015 3.2E-07 45.4 3.3 53 95-147 1-55 (55)
103 PF12719 Cnd3: Nuclear condens 95.1 1 2.2E-05 48.8 17.4 156 308-487 25-183 (298)
104 KOG1822 Uncharacterized conser 95.1 3.2 6.9E-05 53.5 23.0 145 43-188 873-1026(2067)
105 PF14500 MMS19_N: Dos2-interac 94.9 6 0.00013 41.8 23.2 232 85-356 3-256 (262)
106 PF12460 MMS19_C: RNAPII trans 94.6 1.4 3E-05 50.2 17.5 225 24-278 163-405 (415)
107 smart00638 LPD_N Lipoprotein N 94.6 0.14 3E-06 61.1 9.8 96 47-148 447-544 (574)
108 KOG1248 Uncharacterized conser 94.3 7.1 0.00015 48.3 22.8 212 4-218 606-847 (1176)
109 PF12460 MMS19_C: RNAPII trans 94.0 14 0.0003 42.0 26.8 180 306-487 186-392 (415)
110 PF12719 Cnd3: Nuclear condens 93.7 2.8 6.2E-05 45.3 17.0 105 45-149 26-143 (298)
111 PF10363 DUF2435: Protein of u 93.7 0.49 1.1E-05 41.2 8.8 67 86-152 8-75 (92)
112 PF12755 Vac14_Fab1_bd: Vacuol 93.4 0.21 4.5E-06 44.0 6.2 79 97-175 2-82 (97)
113 KOG0413 Uncharacterized conser 92.9 12 0.00027 45.2 20.7 88 61-148 592-684 (1529)
114 KOG1525 Sister chromatid cohes 92.8 33 0.00072 44.0 26.0 200 288-489 236-472 (1266)
115 PF10363 DUF2435: Protein of u 92.6 0.35 7.5E-06 42.2 6.2 68 48-115 5-77 (92)
116 KOG0915 Uncharacterized conser 92.0 46 0.001 42.8 34.0 292 55-362 1048-1368(1702)
117 KOG1949 Uncharacterized conser 91.4 4.2 9.1E-05 47.3 14.5 140 43-188 171-329 (1005)
118 KOG1949 Uncharacterized conser 91.4 1.6 3.4E-05 50.6 11.1 74 74-147 166-247 (1005)
119 PF05004 IFRD: Interferon-rela 91.2 24 0.00052 38.3 20.0 186 83-268 45-258 (309)
120 PF01347 Vitellogenin_N: Lipop 90.9 0.28 6E-06 59.1 5.3 100 43-148 487-588 (618)
121 KOG1248 Uncharacterized conser 90.9 52 0.0011 41.2 27.6 205 174-379 629-860 (1176)
122 PF14664 RICTOR_N: Rapamycin-i 90.8 29 0.00064 38.7 20.5 207 246-453 33-273 (371)
123 KOG0211 Protein phosphatase 2A 90.7 30 0.00064 42.1 21.5 119 32-150 222-346 (759)
124 KOG2160 Armadillo/beta-catenin 90.4 2.3 5E-05 45.9 10.9 132 18-151 92-242 (342)
125 PF08713 DNA_alkylation: DNA a 90.3 0.53 1.1E-05 48.1 6.0 131 13-152 55-187 (213)
126 KOG1517 Guanine nucleotide bin 90.1 2 4.4E-05 52.0 10.9 136 10-150 513-672 (1387)
127 KOG2025 Chromosome condensatio 90.1 3.3 7.2E-05 48.2 12.3 138 8-146 84-256 (892)
128 KOG0413 Uncharacterized conser 90.0 38 0.00083 41.3 20.8 127 25-152 947-1076(1529)
129 PF14631 FancD2: Fanconi anaem 89.1 91 0.002 41.2 27.5 125 198-328 435-573 (1426)
130 PF11698 V-ATPase_H_C: V-ATPas 88.8 0.92 2E-05 41.3 5.5 67 383-449 43-115 (119)
131 KOG2956 CLIP-associating prote 88.6 4.9 0.00011 44.8 11.8 106 252-359 301-419 (516)
132 PF02985 HEAT: HEAT repeat; I 88.2 0.99 2.2E-05 30.4 4.1 29 121-149 1-29 (31)
133 KOG2160 Armadillo/beta-catenin 88.2 2.5 5.4E-05 45.6 9.2 107 84-191 127-241 (342)
134 KOG1991 Nuclear transport rece 88.0 76 0.0016 39.1 27.8 348 7-379 173-577 (1010)
135 PF10633 NPCBM_assoc: NPCBM-as 88.0 0.77 1.7E-05 38.6 4.3 62 655-717 4-66 (78)
136 KOG0946 ER-Golgi vesicle-tethe 87.9 69 0.0015 38.4 25.7 64 87-150 29-93 (970)
137 KOG0567 HEAT repeat-containing 87.8 4.4 9.5E-05 41.9 10.1 88 47-146 188-277 (289)
138 PF13251 DUF4042: Domain of un 87.4 5.6 0.00012 39.4 10.5 122 97-218 2-165 (182)
139 KOG1525 Sister chromatid cohes 87.1 81 0.0018 40.7 22.7 109 367-479 243-356 (1266)
140 KOG4413 26S proteasome regulat 87.1 46 0.001 35.6 22.4 172 17-188 90-284 (524)
141 KOG1222 Kinesin associated pro 86.6 61 0.0013 36.5 19.7 65 81-149 345-413 (791)
142 smart00638 LPD_N Lipoprotein N 86.6 30 0.00066 41.2 18.4 191 288-491 340-545 (574)
143 KOG2213 Apoptosis inhibitor 5/ 86.4 56 0.0012 35.9 18.9 64 256-319 42-106 (460)
144 KOG2759 Vacuolar H+-ATPase V1 86.1 61 0.0013 36.0 29.7 353 57-449 61-438 (442)
145 KOG2062 26S proteasome regulat 84.4 16 0.00034 43.2 13.4 145 4-162 479-632 (929)
146 KOG2025 Chromosome condensatio 84.2 99 0.0021 36.8 30.2 88 51-142 90-186 (892)
147 PF12830 Nipped-B_C: Sister ch 84.1 8.7 0.00019 38.4 10.3 134 307-452 6-143 (187)
148 COG5116 RPN2 26S proteasome re 84.0 12 0.00027 42.6 12.0 129 10-151 482-617 (926)
149 COG1470 Predicted membrane pro 83.4 3.6 7.8E-05 45.8 7.6 73 655-730 396-469 (513)
150 KOG4500 Rho/Rac GTPase guanine 83.1 84 0.0018 35.1 18.4 230 43-272 266-524 (604)
151 cd06561 AlkD_like A new struct 83.0 15 0.00033 36.7 11.8 66 84-152 108-173 (197)
152 PF14664 RICTOR_N: Rapamycin-i 82.5 7.9 0.00017 43.1 10.2 138 11-150 27-177 (371)
153 KOG2062 26S proteasome regulat 82.4 3.7 8.1E-05 48.1 7.5 156 13-179 523-688 (929)
154 PF12765 Cohesin_HEAT: HEAT re 82.0 1.9 4.2E-05 31.4 3.4 38 105-142 3-40 (42)
155 PF08389 Xpo1: Exportin 1-like 81.5 16 0.00035 34.4 10.8 51 95-148 2-53 (148)
156 PF01603 B56: Protein phosphat 80.6 48 0.001 37.6 15.8 188 312-500 136-343 (409)
157 cd03569 VHS_Hrs_Vps27p VHS dom 79.8 20 0.00042 34.1 10.4 94 17-110 12-114 (142)
158 PF08167 RIX1: rRNA processing 79.6 12 0.00025 36.6 9.1 76 75-150 19-98 (165)
159 KOG2032 Uncharacterized conser 79.5 23 0.0005 40.0 12.1 104 50-153 262-375 (533)
160 KOG4413 26S proteasome regulat 79.2 96 0.0021 33.3 24.4 135 75-209 76-224 (524)
161 PF11865 DUF3385: Domain of un 79.1 9 0.00019 37.2 8.1 137 39-185 7-152 (160)
162 cd03561 VHS VHS domain family; 78.7 26 0.00055 32.8 10.8 90 24-113 15-115 (133)
163 PF08167 RIX1: rRNA processing 78.6 24 0.00051 34.5 11.0 106 46-153 25-147 (165)
164 KOG0168 Putative ubiquitin fus 78.6 56 0.0012 39.5 15.3 108 307-415 209-325 (1051)
165 KOG0567 HEAT repeat-containing 78.4 3.5 7.5E-05 42.7 5.0 57 48-108 220-278 (289)
166 PF12530 DUF3730: Protein of u 78.2 89 0.0019 32.4 17.8 147 56-209 11-170 (234)
167 PF01347 Vitellogenin_N: Lipop 78.1 50 0.0011 39.7 16.0 192 287-491 377-589 (618)
168 PF12231 Rif1_N: Rap1-interact 78.0 1.2E+02 0.0027 33.8 21.3 134 18-152 2-166 (372)
169 PF14676 FANCI_S2: FANCI solen 77.7 23 0.00049 34.3 10.3 112 367-481 39-153 (158)
170 PF14631 FancD2: Fanconi anaem 77.0 2.6E+02 0.0057 37.1 23.3 84 120-211 192-275 (1426)
171 KOG2956 CLIP-associating prote 77.0 89 0.0019 35.3 15.5 163 286-452 299-480 (516)
172 PF08713 DNA_alkylation: DNA a 76.2 3.5 7.7E-05 42.0 4.7 69 50-118 124-192 (213)
173 COG5218 YCG1 Chromosome conden 76.1 1.6E+02 0.0035 34.3 27.3 125 25-151 28-163 (885)
174 KOG2933 Uncharacterized conser 75.9 24 0.00052 37.5 10.4 120 27-150 71-200 (334)
175 PF07718 Coatamer_beta_C: Coat 75.8 14 0.0003 34.6 7.8 67 646-713 59-125 (140)
176 KOG1293 Proteins containing ar 75.1 26 0.00056 41.0 11.2 136 57-192 388-535 (678)
177 PF13251 DUF4042: Domain of un 75.0 8.4 0.00018 38.2 6.6 119 25-149 18-174 (182)
178 PF01603 B56: Protein phosphat 74.9 1.6E+02 0.0034 33.5 19.9 90 61-150 109-205 (409)
179 PF00790 VHS: VHS domain; Int 74.7 18 0.00039 34.2 8.7 94 16-109 12-117 (140)
180 PF13001 Ecm29: Proteasome sta 74.2 57 0.0012 38.1 14.4 167 130-303 247-443 (501)
181 smart00288 VHS Domain present 74.2 46 0.001 31.1 11.2 93 18-110 9-111 (133)
182 PF11698 V-ATPase_H_C: V-ATPas 73.9 8.6 0.00019 35.1 5.9 66 83-148 45-114 (119)
183 PF02854 MIF4G: MIF4G domain; 73.7 77 0.0017 31.5 13.9 78 293-370 2-79 (209)
184 PF12074 DUF3554: Domain of un 73.4 1.1E+02 0.0023 33.8 15.8 68 43-110 19-90 (339)
185 PF03224 V-ATPase_H_N: V-ATPas 72.9 87 0.0019 34.0 14.7 133 131-266 68-226 (312)
186 PF03224 V-ATPase_H_N: V-ATPas 72.0 66 0.0014 35.0 13.5 122 58-189 52-178 (312)
187 KOG2137 Protein kinase [Signal 71.8 1.6E+02 0.0035 35.2 16.7 250 78-339 237-497 (700)
188 PF05004 IFRD: Interferon-rela 71.7 1.1E+02 0.0025 33.1 15.1 99 11-109 45-159 (309)
189 KOG2038 CAATT-binding transcri 70.1 2.5E+02 0.0055 33.9 18.0 72 80-153 303-374 (988)
190 KOG4653 Uncharacterized conser 69.7 2.7E+02 0.0059 34.1 21.1 71 83-153 729-801 (982)
191 cd03568 VHS_STAM VHS domain fa 69.4 51 0.0011 31.3 10.4 85 25-109 16-109 (144)
192 COG5116 RPN2 26S proteasome re 69.3 22 0.00047 40.7 8.8 130 11-148 517-649 (926)
193 KOG2213 Apoptosis inhibitor 5/ 68.2 2E+02 0.0043 31.9 29.0 77 14-91 30-106 (460)
194 PLN03076 ARF guanine nucleotid 67.8 4.5E+02 0.0097 35.8 24.5 128 22-150 1110-1254(1780)
195 PF12765 Cohesin_HEAT: HEAT re 67.7 6.6 0.00014 28.6 3.0 25 80-104 17-41 (42)
196 PF07539 DRIM: Down-regulated 67.2 33 0.00072 32.5 8.5 49 79-132 15-63 (141)
197 PF08506 Cse1: Cse1; InterPro 67.1 11 0.00023 42.1 6.0 63 43-105 302-370 (370)
198 cd06561 AlkD_like A new struct 66.8 6.5 0.00014 39.4 4.0 70 53-124 112-182 (197)
199 PF13001 Ecm29: Proteasome sta 65.9 23 0.00049 41.4 8.7 127 19-148 295-442 (501)
200 KOG1967 DNA repair/transcripti 65.7 51 0.0011 40.2 11.2 133 51-190 801-938 (1030)
201 PF08623 TIP120: TATA-binding 65.2 10 0.00023 36.9 4.8 59 93-152 39-97 (169)
202 COG5218 YCG1 Chromosome conden 64.9 1.9E+02 0.0041 33.7 14.9 24 461-488 202-225 (885)
203 PF10274 ParcG: Parkin co-regu 64.9 73 0.0016 31.6 10.6 89 80-170 37-129 (183)
204 PF14806 Coatomer_b_Cpla: Coat 64.9 65 0.0014 29.9 9.6 103 744-850 14-124 (129)
205 PF00514 Arm: Armadillo/beta-c 62.1 12 0.00025 26.9 3.5 30 119-148 11-40 (41)
206 KOG2137 Protein kinase [Signal 61.4 2.2E+02 0.0047 34.2 15.2 68 235-302 345-417 (700)
207 PF00514 Arm: Armadillo/beta-c 60.1 17 0.00038 25.9 4.1 28 82-109 13-40 (41)
208 cd07064 AlkD_like_1 A new stru 59.0 1E+02 0.0023 31.2 11.1 67 83-153 117-183 (208)
209 KOG1991 Nuclear transport rece 57.9 4.7E+02 0.01 32.7 29.9 115 58-174 430-560 (1010)
210 KOG4653 Uncharacterized conser 57.9 2.2E+02 0.0047 34.9 14.4 176 310-489 728-918 (982)
211 KOG1243 Protein kinase [Genera 57.7 15 0.00032 43.3 5.0 97 12-108 333-435 (690)
212 cd03567 VHS_GGA VHS domain fam 57.7 96 0.0021 29.3 9.7 54 98-154 18-71 (139)
213 KOG0946 ER-Golgi vesicle-tethe 57.6 4.3E+02 0.0093 32.2 29.8 153 18-172 32-219 (970)
214 PF10274 ParcG: Parkin co-regu 57.6 22 0.00047 35.2 5.5 50 78-129 77-126 (183)
215 PF05536 Neurochondrin: Neuroc 57.5 3.9E+02 0.0084 31.6 28.1 235 7-269 3-263 (543)
216 KOG2005 26S proteasome regulat 57.5 64 0.0014 37.9 9.8 84 59-149 621-704 (878)
217 PF11614 FixG_C: IG-like fold 57.2 21 0.00045 32.5 5.2 68 659-729 34-101 (118)
218 PF11864 DUF3384: Domain of un 57.0 3.6E+02 0.0078 31.1 34.9 85 61-145 5-95 (464)
219 KOG1992 Nuclear export recepto 56.8 4.5E+02 0.0098 32.2 21.3 290 42-373 452-772 (960)
220 KOG2149 Uncharacterized conser 56.1 98 0.0021 34.3 10.6 69 84-152 61-131 (393)
221 PF09759 Atx10homo_assoc: Spin 56.0 46 0.00099 29.6 6.8 62 437-500 3-70 (102)
222 KOG1820 Microtubule-associated 55.9 95 0.0021 38.3 11.7 132 21-152 307-446 (815)
223 PF11935 DUF3453: Domain of un 55.9 23 0.0005 36.9 5.8 60 89-148 1-71 (239)
224 KOG2973 Uncharacterized conser 55.7 2.9E+02 0.0064 29.7 17.5 61 49-111 6-72 (353)
225 cd03572 ENTH_epsin_related ENT 55.4 15 0.00033 33.7 3.8 42 75-116 32-73 (122)
226 PF08506 Cse1: Cse1; InterPro 55.2 1.1E+02 0.0024 34.1 11.4 128 85-214 214-362 (370)
227 cd00238 ERp29c ERp29 and ERp38 55.0 96 0.0021 27.1 8.6 59 316-376 10-72 (93)
228 COG5110 RPN1 26S proteasome re 55.0 3.1E+02 0.0068 31.7 14.3 88 58-149 616-705 (881)
229 PF10521 DUF2454: Protein of u 53.7 1.3E+02 0.0028 32.2 11.3 50 220-270 100-151 (282)
230 PF10521 DUF2454: Protein of u 53.6 1.7E+02 0.0037 31.3 12.2 73 76-148 114-202 (282)
231 KOG2933 Uncharacterized conser 53.5 1.9E+02 0.0041 31.1 11.8 146 67-218 77-225 (334)
232 KOG1517 Guanine nucleotide bin 52.7 5.8E+02 0.013 32.3 17.2 129 323-452 571-735 (1387)
233 PF03130 HEAT_PBS: PBS lyase H 52.7 20 0.00042 23.2 3.0 26 62-87 1-26 (27)
234 cd00197 VHS_ENTH_ANTH VHS, ENT 50.9 1E+02 0.0022 27.7 8.7 65 86-152 5-69 (115)
235 KOG2199 Signal transducing ada 50.1 1E+02 0.0022 34.0 9.4 92 12-103 11-111 (462)
236 KOG1967 DNA repair/transcripti 49.9 6E+02 0.013 31.6 21.3 108 250-357 182-304 (1030)
237 PF14500 MMS19_N: Dos2-interac 49.3 3.4E+02 0.0075 28.6 18.4 204 244-453 4-241 (262)
238 PF00790 VHS: VHS domain; Int 48.9 1.3E+02 0.0028 28.4 9.3 65 85-151 9-73 (140)
239 KOG2140 Uncharacterized conser 48.8 1.1E+02 0.0024 35.0 9.7 24 293-316 166-189 (739)
240 PF03896 TRAP_alpha: Transloco 48.7 1.2E+02 0.0026 32.5 9.7 76 657-732 100-181 (285)
241 KOG1943 Beta-tubulin folding c 48.5 6.7E+02 0.015 31.7 32.2 145 4-150 332-501 (1133)
242 PF05327 RRN3: RNA polymerase 48.3 2.1E+02 0.0045 34.1 12.9 127 327-453 54-197 (563)
243 PF07749 ERp29: Endoplasmic re 46.3 1.1E+02 0.0023 26.8 7.6 58 316-375 12-73 (95)
244 PF12530 DUF3730: Protein of u 45.7 3.6E+02 0.0079 27.8 16.9 132 18-151 10-153 (234)
245 KOG4535 HEAT and armadillo rep 45.1 29 0.00062 39.0 4.5 129 19-150 22-180 (728)
246 PF12231 Rif1_N: Rap1-interact 43.6 5.1E+02 0.011 28.9 19.6 216 47-266 91-351 (372)
247 cd03569 VHS_Hrs_Vps27p VHS dom 43.4 2.3E+02 0.005 26.8 10.0 65 86-153 9-73 (142)
248 KOG0891 DNA-dependent protein 42.0 8.9E+02 0.019 34.0 18.1 279 51-337 450-762 (2341)
249 cd03561 VHS VHS domain family; 40.8 1.5E+02 0.0032 27.7 8.2 51 99-151 18-68 (133)
250 cd03568 VHS_STAM VHS domain fa 40.8 2.5E+02 0.0054 26.7 9.8 72 79-150 35-111 (144)
251 PF09324 DUF1981: Domain of un 39.6 1.1E+02 0.0024 26.2 6.5 65 80-145 16-84 (86)
252 smart00543 MIF4G Middle domain 39.4 3.8E+02 0.0082 26.3 16.1 47 302-349 11-57 (200)
253 PF08569 Mo25: Mo25-like; Int 39.1 5.6E+02 0.012 28.2 26.8 160 198-389 125-296 (335)
254 cd03567 VHS_GGA VHS domain fam 38.9 3.4E+02 0.0074 25.6 10.5 84 24-107 16-113 (139)
255 PF08569 Mo25: Mo25-like; Int 38.6 4.2E+02 0.0091 29.1 12.4 105 348-454 166-287 (335)
256 smart00567 EZ_HEAT E-Z type HE 38.5 32 0.00069 22.6 2.4 23 61-83 2-24 (30)
257 PF09759 Atx10homo_assoc: Spin 38.0 77 0.0017 28.2 5.3 60 325-384 2-68 (102)
258 KOG4500 Rho/Rac GTPase guanine 37.2 6.6E+02 0.014 28.4 20.1 98 119-217 314-421 (604)
259 KOG2274 Predicted importin 9 [ 36.5 9.3E+02 0.02 30.0 28.0 222 41-270 444-692 (1005)
260 smart00288 VHS Domain present 36.5 2.7E+02 0.0058 26.0 9.2 50 99-150 18-67 (133)
261 smart00185 ARM Armadillo/beta- 36.5 57 0.0012 22.7 3.7 27 82-108 13-39 (41)
262 KOG2973 Uncharacterized conser 35.7 1.1E+02 0.0024 32.8 6.8 65 84-150 6-72 (353)
263 cd00197 VHS_ENTH_ANTH VHS, ENT 34.2 3E+02 0.0066 24.6 9.0 51 23-73 14-64 (115)
264 PF07705 CARDB: CARDB; InterP 34.2 51 0.0011 28.5 3.8 55 655-712 18-72 (101)
265 PF00927 Transglut_C: Transglu 34.2 36 0.00079 30.3 2.9 58 655-714 14-79 (107)
266 PF07571 DUF1546: Protein of u 33.8 1.5E+02 0.0032 25.8 6.5 59 91-149 16-78 (92)
267 KOG2011 Sister chromatid cohes 33.5 3.2E+02 0.007 34.5 11.3 55 250-304 299-356 (1048)
268 smart00185 ARM Armadillo/beta- 33.2 59 0.0013 22.6 3.3 30 119-148 11-40 (41)
269 KOG2286 Exocyst complex subuni 33.2 2.9E+02 0.0062 33.3 10.6 68 335-402 575-642 (667)
270 PF14225 MOR2-PAG1_C: Cell mor 32.7 6.2E+02 0.013 26.7 20.6 82 292-376 133-218 (262)
271 PF11701 UNC45-central: Myosin 32.1 82 0.0018 30.4 5.1 55 92-147 16-70 (157)
272 PF12397 U3snoRNP10: U3 small 31.7 3.9E+02 0.0085 24.2 10.6 108 41-170 1-116 (121)
273 PLN03076 ARF guanine nucleotid 31.5 1.5E+03 0.031 31.2 17.5 102 239-340 1182-1301(1780)
274 PF07610 DUF1573: Protein of u 31.4 99 0.0022 22.8 4.3 42 662-707 2-43 (45)
275 PF11864 DUF3384: Domain of un 31.1 8.7E+02 0.019 28.0 18.7 18 283-300 446-463 (464)
276 cd08050 TAF6 TATA Binding Prot 31.1 6.1E+02 0.013 28.0 12.3 145 3-150 172-341 (343)
277 KOG3723 PH domain protein Melt 30.3 9.4E+02 0.02 28.1 15.3 44 757-800 657-705 (851)
278 PF03378 CAS_CSE1: CAS/CSE pro 30.3 8.8E+02 0.019 27.8 14.4 156 49-210 33-214 (435)
279 cd00256 VATPase_H VATPase_H, r 30.0 8.8E+02 0.019 27.7 26.0 330 54-404 45-416 (429)
280 COG5066 SCS2 VAMP-associated p 29.9 1.3E+02 0.0029 30.1 6.0 90 659-769 20-109 (242)
281 COG5369 Uncharacterized conser 29.8 2.5E+02 0.0053 32.5 8.7 135 81-215 431-582 (743)
282 KOG3252 Uncharacterized conser 29.6 1.4E+02 0.0029 29.4 5.8 60 68-129 12-73 (217)
283 PF05327 RRN3: RNA polymerase 29.5 9.7E+02 0.021 28.5 14.5 93 303-396 68-175 (563)
284 KOG4199 Uncharacterized conser 29.4 3.2E+02 0.007 29.8 9.1 120 29-153 230-363 (461)
285 KOG1684 Enoyl-CoA hydratase [L 29.3 1.9E+02 0.0041 31.7 7.5 49 286-334 257-306 (401)
286 PF11865 DUF3385: Domain of un 28.9 4.8E+02 0.01 25.2 9.9 34 241-274 12-47 (160)
287 KOG1048 Neural adherens juncti 28.7 1.1E+03 0.025 28.6 19.8 68 83-150 235-305 (717)
288 PF12074 DUF3554: Domain of un 28.2 8.1E+02 0.018 26.7 18.8 110 61-171 2-113 (339)
289 PF12333 Ipi1_N: Rix1 complex 28.0 1.3E+02 0.0028 26.6 5.3 50 78-127 8-57 (102)
290 KOG4535 HEAT and armadillo rep 28.0 2.9E+02 0.0062 31.6 8.7 134 91-224 6-177 (728)
291 COG5110 RPN1 26S proteasome re 27.5 1E+03 0.023 27.8 14.6 278 46-338 413-705 (881)
292 KOG2759 Vacuolar H+-ATPase V1 27.5 89 0.0019 34.9 4.8 69 81-149 366-438 (442)
293 KOG2011 Sister chromatid cohes 27.5 4.4E+02 0.0096 33.4 11.1 107 41-147 277-397 (1048)
294 PF04388 Hamartin: Hamartin pr 26.6 2.2E+02 0.0047 34.6 8.4 132 13-152 8-143 (668)
295 KOG2032 Uncharacterized conser 26.2 1.1E+03 0.023 27.4 20.8 139 80-218 257-407 (533)
296 PF08568 Kinetochor_Ybp2: Unch 26.2 5.9E+02 0.013 30.8 12.1 63 81-147 442-505 (633)
297 KOG3723 PH domain protein Melt 26.1 4.7E+02 0.01 30.5 10.0 60 373-432 226-286 (851)
298 PF06685 DUF1186: Protein of u 25.5 5.2E+02 0.011 27.1 9.8 68 312-379 114-184 (249)
299 PF07539 DRIM: Down-regulated 25.0 86 0.0019 29.7 3.7 44 49-93 20-63 (141)
300 PF03378 CAS_CSE1: CAS/CSE pro 24.8 1.1E+03 0.024 27.0 17.8 153 160-325 25-194 (435)
301 PF14961 BROMI: Broad-minded p 24.7 7.6E+02 0.016 31.9 12.3 68 49-116 164-237 (1296)
302 PF13981 SopA: SopA-like centr 24.2 2.4E+02 0.0051 26.6 6.4 51 434-487 67-121 (135)
303 PF08631 SPO22: Meiosis protei 24.2 8.7E+02 0.019 25.7 18.4 100 253-353 81-185 (278)
304 KOG2141 Protein involved in hi 24.1 1.3E+03 0.029 27.9 16.1 81 403-488 432-514 (822)
305 PF12054 DUF3535: Domain of un 23.8 1.1E+03 0.025 26.9 15.9 51 434-487 290-340 (441)
306 PF00613 PI3Ka: Phosphoinositi 23.1 3E+02 0.0065 27.4 7.4 91 25-130 29-121 (184)
307 PF11701 UNC45-central: Myosin 22.9 1.6E+02 0.0034 28.4 5.2 92 58-149 17-117 (157)
308 KOG4524 Uncharacterized conser 22.9 5.7E+02 0.012 31.9 10.6 130 77-216 799-933 (1014)
309 KOG1293 Proteins containing ar 22.6 1.4E+03 0.03 27.4 29.5 160 308-482 418-588 (678)
310 KOG1243 Protein kinase [Genera 22.4 1.4E+03 0.031 27.5 15.3 159 10-190 252-418 (690)
311 PF05536 Neurochondrin: Neuroc 22.0 1.3E+03 0.029 27.1 15.3 106 346-452 98-216 (543)
312 PF00635 Motile_Sperm: MSP (Ma 21.7 2.7E+02 0.0058 24.4 6.2 50 656-709 18-67 (109)
313 KOG4712 Uncharacterized conser 21.6 1.2E+03 0.027 29.0 12.7 15 302-316 284-298 (1335)
314 KOG2051 Nonsense-mediated mRNA 21.4 1.8E+03 0.038 28.2 16.6 80 401-482 522-607 (1128)
315 TIGR02756 TraK_Ftype type-F co 20.9 1.8E+02 0.004 30.1 5.5 62 643-707 168-230 (232)
316 KOG2549 Transcription initiati 20.9 5.4E+02 0.012 30.0 9.4 70 79-148 286-369 (576)
317 cd00871 PI4Ka Phosphoinositide 20.8 1.7E+02 0.0036 28.9 4.8 14 94-107 84-97 (175)
318 PF12243 CTK3: CTD kinase subu 20.7 7.2E+02 0.016 23.5 12.3 86 84-176 11-102 (139)
319 PF06857 ACP: Malonate decarbo 20.7 2.4E+02 0.0051 24.3 5.2 45 814-859 8-53 (87)
320 PF08389 Xpo1: Exportin 1-like 20.6 1.4E+02 0.0031 27.8 4.4 54 80-133 81-139 (148)
No 1
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-107 Score=882.93 Aligned_cols=811 Identities=18% Similarity=0.258 Sum_probs=644.9
Q ss_pred CCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 002996 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (860)
Q Consensus 3 ~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l 82 (860)
+|+|+.|++++.+++++|+.|++|.+|||+++.+.++++|++-|++|+++|||.+.||...+|||.++++|+..||++.+
T Consensus 68 lg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~ 147 (938)
T KOG1077|consen 68 LGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF 147 (938)
T ss_pred hcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcC--CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996 83 CDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (860)
Q Consensus 83 ~~~v~~~l~d--~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~ 160 (860)
.++|.|+|.+ +.+||||+||+|++++|+..||++...+|.+++..||+|++.+|+.++..++.-|.+..++.+-.-..
T Consensus 148 ~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~ 227 (938)
T KOG1077|consen 148 ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP 227 (938)
T ss_pred hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence 9999999986 78999999999999999999999998899999999999999999999999999999887654333333
Q ss_pred HHHHHHHHHhc-------------cCChhHHHHHHHHHHhcccc-CHHHHHH---HHHHHhhhhc---------CCChHH
Q 002996 161 HTLSKLLTALN-------------ECTEWGQVFILDALSRYKAA-DAREAEN---IVERVTPRLQ---------HANCAV 214 (860)
Q Consensus 161 ~~~~~Ll~~l~-------------~~~~w~q~~il~~L~~~~~~-~~~~~~~---ll~~v~~~l~---------~~n~aV 214 (860)
..+.+|..... -++||+|++++|+|+.|.+. |+..... +++.+....+ |+|+
T Consensus 228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na-- 305 (938)
T KOG1077|consen 228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNA-- 305 (938)
T ss_pred HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhh--
Confidence 44455544331 25899999999999999644 3333333 3344433332 3333
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhCh--hhhhccce-EEEecc-CCcHH
Q 002996 215 VLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIK-VFFCKY-NDPIY 289 (860)
Q Consensus 215 v~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p--~~~~~~~~-~~~~l~-~d~~~ 289 (860)
-+|++|++++.+.+.+...+++.+++..|+.||+ +++|+||++|+++.+++...+ +.++.|.. +|..+. +.|.|
T Consensus 306 -~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 306 -KNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVS 384 (938)
T ss_pred -HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchH
Confidence 3334444455555555556788889999999995 899999999999999998765 45777866 666666 78899
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 002996 290 VKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIV 369 (860)
Q Consensus 290 Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~ 369 (860)
||++++|+||.||+.+|++.||.||+.|+..+|..++++++.+++.+|+||+++.+||||++++|++.+|+|+.+|+|.+
T Consensus 385 irrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~R 464 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYR 464 (938)
T ss_pred HHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHhhccCCchHH-HHHHHHHHhhcccccCC-----HHHHHHHHHhhCCCCcHHHHHHHHHH
Q 002996 370 IKDIFRRYPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQLQLLTA 443 (860)
Q Consensus 370 l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~-~~~~~wilGEy~~~i~~-----~~~~l~~~~~~~~~e~~~v~~~iLta 443 (860)
+++|+.+++++|.++.+++++++....-.+. ..+..||+||||++|.+ +...+..+.++|+.+++.+|+.+||+
T Consensus 465 vvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtT 544 (938)
T KOG1077|consen 465 VVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTT 544 (938)
T ss_pred hheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHH
Confidence 9999999999999999999999964322222 24567999999999975 67889999999999999999999999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCcccCChHHHHHHHHh
Q 002996 444 TVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLAN 523 (860)
Q Consensus 444 ~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~~ 523 (860)
.+|++..+|+ .+..|+++|+.. .+..|+|+||||+||+.|.+.....+.++|+++||||.++. +.++.+|.+.
T Consensus 545 yiKl~nl~PE--i~~~v~~vFq~~-~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~----ssll~kl~~~ 617 (938)
T KOG1077|consen 545 YIKLINLFPE--IKSNVQKVFQLY-SNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERE----SSLLKKLKKK 617 (938)
T ss_pred HHHHHhhChh--hhHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCcccc----chHHHHhhcc
Confidence 9999999997 799999999985 46799999999999999998765567888999999998876 6788886542
Q ss_pred cCcccccccCCchhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-CCCCC-CCCCC
Q 002996 524 IATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPY--AATR-QPAPP-PAAPV 599 (860)
Q Consensus 524 ~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~~ 599 (860)
||+..-.+..+... ...+.. ++.++|.++..+..+ .+.. -|+.| |..+.
T Consensus 618 ---------~~~~~~l~~~~~~~-----------------~~~~~~-~~~~~~tp~~v~~~s~st~~~~v~~~p~~n~t~ 670 (938)
T KOG1077|consen 618 ---------KPSAISLRAGAGPK-----------------TLANPP-PVASEPTPSKVSKRSNSTDPLSVPSPPPPNNTI 670 (938)
T ss_pred ---------CCchhccccccCCc-----------------ccCCCC-cccCCCCcccccCCCCCCCcccCCCCCCCCCCc
Confidence 33222111111000 000000 000111111111000 0000 01111 11111
Q ss_pred -CC----CCCCcccccccCCCCCCcccCCCCCCCCC--CCccccccCCCCCCeEEEEEEEeeCCeeEEEEEEEecCCCCc
Q 002996 600 -SP----PVPDLLGDLIGLDNSAAIVPADQAAASPV--PALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPL 672 (860)
Q Consensus 600 -~~----~~~~~~~dl~~~~~~~~~~p~~~~~~~~~--~~~~vl~~~~~~~gl~I~~~~~~~~~~~~l~l~~~N~s~~~l 672 (860)
+. +..+..+|+.|..+.+.+.++|.-++.++ .+.|+++++ ..+||+++.+.+++++++.++|+|++++++
T Consensus 671 ~~~~~~~~~~di~s~~~~~~s~~~~p~~~~~~f~r~~~k~~GVLfed---~~iQIgvk~e~r~~~grl~LfygNkts~~l 747 (938)
T KOG1077|consen 671 SSVNSQIPSVDIFSGLDGYYSRQILPGNAFYGFTRFCSKDNGVLFED---SLIQIGVKSETRNNLGRLYLFYGNKTSVPL 747 (938)
T ss_pred cCCCCCCCchhhhcCccccccccCCChhhhhhhhhheeccCcEEeec---cceeEEEeeeccCcCCeEEEEecccccccc
Confidence 11 11122233333333334455665555554 468899988 679999999999999999999999999999
Q ss_pred cceeeeeccC---ccCcccCCCCCCCccCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccc--cccc
Q 002996 673 DGFMIQFNKN---TFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKIS--LHVL 747 (860)
Q Consensus 673 t~f~v~i~~n---~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~P--l~~~ 747 (860)
++|+.++-++ .+.+..+..+..++|+||.|+++.+.+.|.+++.++| ++.+.|.++|..+ .+.-.+++| ++.+
T Consensus 748 t~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~p-il~isfk~g~ti~-~~ta~l~lp~~iskf 825 (938)
T KOG1077|consen 748 TSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPP-ILAISFKFGGTIN-LKTAILKLPVLISKF 825 (938)
T ss_pred cccceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCC-eEEEEEEeCCchh-hhhhceechhhHhhh
Confidence 9999988753 2345444445667999999999999999999888854 7788888886544 455458888 5556
Q ss_pred cccCCCCChHHHHHHhccCCCC-ccceeecCCCccCCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec---CCccEE
Q 002996 748 FTEDGRMERGSFLETWRSLPDS-NEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP---PGVPFL 823 (860)
Q Consensus 748 ~~~~~~~~~~~F~~~W~~l~~~-~E~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~---~~~~~L 823 (860)
| +|..|+.++|+.||+++++. +|.++.++...+.+...+.+++.++|..++. .+||++++++.+|-+- .++|||
T Consensus 826 ~-~Pt~l~s~~Ff~rWk~ls~~~~~~q~~fk~~rpld~~~l~~~l~gf~~~l~~-~VDpnp~nlv~agii~t~tq~vgCL 903 (938)
T KOG1077|consen 826 F-QPTELTSEDFFSRWKQLSGPQQEAQEVFKANRPLDAPSLENKLLGFGQTLLD-NVDPNPSNLVGAGIIHTKSQNVGCL 903 (938)
T ss_pred c-CcccccHHHHHHHHHhcccchhHHHHHHhcCCccccHHHHHHHhhhhHHHhc-cCCCCccceEEEEEEeecceeeeeE
Confidence 6 68999999999999999995 6999999988888888899999999987776 5999998776654442 479999
Q ss_pred EEEEeecCCCceEEEEecCCCchHHHHHHHHHHH
Q 002996 824 IELTTVIGNPGVKCAIKTPNPDIASLFFEAIETL 857 (860)
Q Consensus 824 v~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~ 857 (860)
+|++++.++..+|+++|++++.++..++++++..
T Consensus 904 ~RiEpn~~~~~~rltvrss~~tlak~l~e~l~nq 937 (938)
T KOG1077|consen 904 LRIEPNAQAQMYRLTVRTSKPTLAKELVELLKNQ 937 (938)
T ss_pred EEeccCCcceEEEEEEecCCchHHHHHHHHHhhc
Confidence 9999998888899999999999999999998764
No 2
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=4.4e-105 Score=929.91 Aligned_cols=543 Identities=37% Similarity=0.668 Sum_probs=508.0
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002996 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~ 80 (860)
||+|+|+|++|++|+++++|+|+++|||||||+++|++.+||+++|+||+|+||++|+||++||+|||+||+|+.++|++
T Consensus 60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e 139 (746)
T PTZ00429 60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLE 139 (746)
T ss_pred HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~ 160 (860)
++.++|++++.|++|||||+|++|++|+|+.+|+.+++.+|.+.|.+||+|+|++|++||+.+|++|.+..+. .+.+.+
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~ 218 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-KIESSN 218 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-hhHHHH
Confidence 9999999999999999999999999999999999998778999999999999999999999999999987664 478889
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHH
Q 002996 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKK 239 (860)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~ 239 (860)
+.+++|++.+.+++||+|+.+|++|.+|.|.+.+++..+++.+.++|+|+|++|+++| .++..+.....++..++++++
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r 298 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVR 298 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 344334322246777888888
Q ss_pred hhhHHHhhcCCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhh
Q 002996 240 MAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT 319 (860)
Q Consensus 240 ~~~~L~~lls~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~ 319 (860)
+..+|++|+++++|+||++|++|..|++++|.+|.+|+++|||+++||.|||++||++|+.|||++|+..|++||.+|++
T Consensus 299 l~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~ 378 (746)
T PTZ00429 299 VNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYAS 378 (746)
T ss_pred HHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhh
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhh--ccCCc
Q 002996 320 EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL--DTLDE 397 (860)
Q Consensus 320 ~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l--~~~~~ 397 (860)
+.|.+|++++|++||+||.|++..++||+++|+++++.+++++ .+++.++++|+|+||+.+ ++..|++.+ +.+.+
T Consensus 379 d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e 455 (746)
T PTZ00429 379 GVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVE 455 (746)
T ss_pred cCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH--HHHHHHHhhccccccc
Confidence 9999999999999999999999999999999999999887765 478999999999999864 778888765 67899
Q ss_pred hHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHH
Q 002996 398 PEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLR 477 (860)
Q Consensus 398 ~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evr 477 (860)
|+++++++||+|||++.+++++++|+.++++|.+|+++||+++|||++|+|.++|++ .+++++++|+.++.+++|+|||
T Consensus 456 ~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DVR 534 (746)
T PTZ00429 456 EEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDVR 534 (746)
T ss_pred HHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhHH
Confidence 999999999999999999999999999999999999999999999999999999976 7899999999888788999999
Q ss_pred HHHHHHHHHhcCCH--HHHHHhhhcCCCCCCCCcccCChHHHHHHHHhcCcccccccCCchhhhccccccCCC
Q 002996 478 DRAYIYWRLLSTDP--EAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASR 548 (860)
Q Consensus 478 dRA~~y~~ll~~~~--~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~vy~~~~~~~~~~~~~~~~~ 548 (860)
|||++|||||+.++ +.++++|+.++|++.......++.++++|+.+|||+|+||+||++.|+++......+
T Consensus 535 DRA~~Y~rLLs~~~~~~~a~~iv~~~~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~ 607 (746)
T PTZ00429 535 DRAFAYWRLLSKGITVAQMKKVVHGQMVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVE 607 (746)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchhccccc
Confidence 99999999999764 668999999999987766677888999999999999999999999999887765544
No 3
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-105 Score=884.87 Aligned_cols=689 Identities=64% Similarity=0.986 Sum_probs=611.8
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002996 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~ 80 (860)
||.|+|||.+|++|+|++++.|+++|||+|||+++|+..+|+++++++|++.||+.|+||.+|++|+|++|+++.+.+.+
T Consensus 41 Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~e 120 (734)
T KOG1061|consen 41 MTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITE 120 (734)
T ss_pred CccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-Cchhcc
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEIT 159 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~-~~~~~~ 159 (860)
++..++.+++.|.+|||||+|+.|+.|+|+.+++.+.+.++.+.|+.++.|.||+|++||+++|.+|.+.++. ..+.+.
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 578899
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH--HHHHHhhhccChHHHHHHH
Q 002996 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA--MILQQMELITSTDVVRNLC 237 (860)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a--~~~~~l~~~~~~~~~~~~~ 237 (860)
+..++++++.+.+|+||+|+.+|+.++.|.|.++.+++.+++++.++|+|.|++|++++ +++..+... .+....+.
T Consensus 201 ~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~--~~~~~~~~ 278 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL--KQVNELLF 278 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 556656553 23556788
Q ss_pred HHhhhHHHhhcCCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Q 002996 238 KKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEY 317 (860)
Q Consensus 238 ~~~~~~L~~lls~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y 317 (860)
+++.++|.+++++.++++|++|+++..+.+++|++|..+++.|||.|+||+|||..||+++..+++.+|+.+++.||.+|
T Consensus 279 ~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eY 358 (734)
T KOG1061|consen 279 KKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEY 358 (734)
T ss_pred HHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 89999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCc
Q 002996 318 ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDE 397 (860)
Q Consensus 318 ~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~ 397 (860)
+++.|.+|++++|++||+||.|++.. +.||++++++++.+.+|+++|++.++++++|+||+.++.++..+++.++.+++
T Consensus 359 atevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~e 437 (734)
T KOG1061|consen 359 ATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQE 437 (734)
T ss_pred hhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCC
Confidence 99999999999999999999999888 88999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHH
Q 002996 398 PEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLR 477 (860)
Q Consensus 398 ~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evr 477 (860)
|++|++++||+|||++.+++++++|+.|+++|.+|+.+||+.+|||.+|+|.++|.+ .+++++.+|..|+.++.|+|+|
T Consensus 438 peak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~-tq~~l~~vL~~~~~d~~~~dlr 516 (734)
T KOG1061|consen 438 PEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTE-TQELLQGVLPLATADTDNPDLR 516 (734)
T ss_pred hHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHhhhhccccChhhh
Confidence 999999999999999999999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCcccCChHHHHHHHHhcCcccccccCCchhhhccccccCCCCCCCCCCCC
Q 002996 478 DRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNG 557 (860)
Q Consensus 478 dRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (860)
||+.+|||+|+.++..+++++++++|.++...+.+++.++++|..+|||+|+|||||++.|+.+.+.+.... ++.....
T Consensus 517 Dr~l~Y~RlLs~~~~~a~~v~~~~kP~is~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~f~~~~~~~~~~~-~~~~~l~ 595 (734)
T KOG1061|consen 517 DRGLIYWRLLSEDPLIAKDVVLAEKPLISEETDSLDPTLLEELLCDIGTLSSVYHKPPSAFVEGQKGGLFKR-DEVGVLL 595 (734)
T ss_pred hhHHHHHHHhhcCHHHHHHHHhcCCCccccCCCCCCchHHHHHHHhhccccceeecChHHhcCcCcccccCC-cchhhhc
Confidence 999999999999999999999999999999988899999999999999999999999999998877655432 1110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCCCCCCCCCCccccc
Q 002996 558 SEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVL 637 (860)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~p~~~~~~~~~~~~~vl~ 637 (860)
. ++...| . .+|+++..... . ..+
T Consensus 596 ---------~------------------~~~s~~----------~----~~D~~~~~~es-~---------------~~~ 618 (734)
T KOG1061|consen 596 ---------S------------------FAESQP----------S----IGDLLGGGLES-L---------------DLF 618 (734)
T ss_pred ---------c------------------ccccCC----------C----chhhccCcccc-c---------------ccc
Confidence 0 000000 0 01222111100 0 000
Q ss_pred cCCCC--CCeEEEEEEEeeCCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeecCCC
Q 002996 638 PASTG--QGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNM 715 (860)
Q Consensus 638 ~~~~~--~gl~I~~~~~~~~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~~~~ 715 (860)
+...+ -.+++...|+++.+++.+...++|++.+...+|..+|+ | .+.. .+-....|+++....+++.+.++.
T Consensus 619 ~~~g~~t~~~e~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~f~----~-a~s~-~~~~P~~~~~~~~~~~~l~~~~~~ 692 (734)
T KOG1061|consen 619 DLGGLGTLSLEVSSQFTRKEGELVIYMKFTNKANSIRIDFEIQFN----G-APSL-ANSKPLLPNGKAVDSLPLGTFGLM 692 (734)
T ss_pred cCCCCcccchhhhcceecccccccccccccccccchhhhhHhhcC----C-CCcc-cCCCCCccccchhhccCcchhhhh
Confidence 00000 01568888999889999999999999999999999987 3 1111 112355678888999999999998
Q ss_pred CCCCCCcceEEEEecCCCCeEEEEeccccccccccCCCCChHHHHHHhccCCC
Q 002996 716 SAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPD 768 (860)
Q Consensus 716 ~~~~~~~~l~~~~~~~~~~~~~~~l~~Pl~~~~~~~~~~~~~~F~~~W~~l~~ 768 (860)
...+|..++|++++.+- ...++..+|.+..+| |..+|++++.
T Consensus 693 ~~~~~~~~~q~~~~~~~-------~~~~~~~~~v~~~~~----~~~t~~~~~~ 734 (734)
T KOG1061|consen 693 RPMEPLSNLQEAVKNNK-------ALNMLKTLFVEDGSM----FLATWKGIPN 734 (734)
T ss_pred ccCCCcchHHHHHhchH-------hhccchhHHHHHHHH----HHHhhccCCC
Confidence 88888889999999763 345566777776666 9999999863
No 4
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-95 Score=796.12 Aligned_cols=806 Identities=29% Similarity=0.457 Sum_probs=633.0
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002996 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~ 80 (860)
|..|+|+|.+|++|+|+++|+|.++||++|+|+.+|++++||+++|.||+|||+|.|||+++||.|||+|++||.+.+++
T Consensus 63 iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaP 142 (968)
T KOG1060|consen 63 IAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAP 142 (968)
T ss_pred HhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~ 160 (860)
.++-+|+++..|.+|||||.||+|+.|+|+.+|+.-. .+.+.+..||.|++|.|+++|+.++.++|++ .++++|
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evCPe----rldLIH 216 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVCPE----RLDLIH 216 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhchh----HHHHhh
Confidence 9999999999999999999999999999999999876 5999999999999999999999999999765 489999
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhccccC---------------------------------HHHHHHHHHHHhhhh
Q 002996 161 HTLSKLLTALNECTEWGQVFILDALSRYKAAD---------------------------------AREAENIVERVTPRL 207 (860)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~---------------------------------~~~~~~ll~~v~~~l 207 (860)
+.+++||+.|.+.++|+|+.++.+|.+|++.. +.+...+++...++|
T Consensus 217 knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl 296 (968)
T KOG1060|consen 217 KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL 296 (968)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence 99999999999999999999999999997421 134566889999999
Q ss_pred cCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhcCCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCC
Q 002996 208 QHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYND 286 (860)
Q Consensus 208 ~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d 286 (860)
+++|++|++++ -+++.+ .|.. -..+++.+|+++|.+++++||++|++|..|+.+.|.+|.+|++.||.+..|
T Consensus 297 ~S~n~sVVmA~aql~y~l----AP~~---~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssD 369 (968)
T KOG1060|consen 297 QSRNPSVVMAVAQLFYHL----APKN---QVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSD 369 (968)
T ss_pred hcCCcHHHHHHHhHHHhh----CCHH---HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCC
Confidence 99999999998 456655 2221 123567899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHH
Q 002996 287 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEA 366 (860)
Q Consensus 287 ~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~ 366 (860)
|..+|..||++|..|+|+.|+..|++||..|+.+.|.+|+..+|++||+||.+.-...+.|++.|+.+++.....|..++
T Consensus 370 p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~ea 449 (968)
T KOG1060|consen 370 PTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEA 449 (968)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC-HHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 002996 367 IIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATV 445 (860)
Q Consensus 367 i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~-~~~~l~~~~~~~~~e~~~v~~~iLta~~ 445 (860)
+.+|+.+++++|-.+..++.+|.+.++.+..|.|+++++|++|||+..+.. ++|++|.++++|.+|.++||++||...+
T Consensus 450 V~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~a 529 (968)
T KOG1060|consen 450 VVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSA 529 (968)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999875 7999999999999999999999999999
Q ss_pred HHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCH---HHHHHhhhcCCCCCCCCcccCChH-HHHHHH
Q 002996 446 KLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDP---EAAKDVVLAEKPVISDDSNQLDPS-LLDELL 521 (860)
Q Consensus 446 Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~---~~~~~~v~~~~p~~~~~~~~~~~~-l~~~l~ 521 (860)
|++...+++ .+.+++++|+++.+ +.++|+||||+||..|+.... +.+++++++.||.........++. .++.+.
T Consensus 530 KLyl~~~~~-~kll~~Yv~~L~~y-D~sYDiRDRaRF~r~l~~~~~~Ls~h~~ei~l~~Kpa~~~es~f~~~~~~~gslS 607 (968)
T KOG1060|consen 530 KLYLTNIDQ-TKLLVQYVFELARY-DLSYDIRDRARFLRQLISPLEALSKHAREIFLASKPAPVLESSFKDRHYQLGSLS 607 (968)
T ss_pred hheEechhh-HHHHHHHHHHHhcc-CCCcchhHHHHHHHHHhccHHHHHHHHHHHhhccCCCccCcccccCCCcccchHH
Confidence 999998876 88999999999876 489999999999999998633 577899999886543322222221 122222
Q ss_pred HhcCcccccccCCchhhhccccc--cC-------CCCCCCCCCCCC---CCCCC--CCCCCC--------CCC-C-----
Q 002996 522 ANIATLSSVYHKPPEAFVTRVKT--TA-------SRTDDEDYPNGS---EQGYS--DAPTHV--------ADE-G----- 573 (860)
Q Consensus 522 ~~~~~~~~vy~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~---~~~~~--~~~~~~--------~~~-~----- 573 (860)
.-++.-+..|..-|.+......+ .. .+.++++...+. +.+++ ..++.. .++ .
T Consensus 608 ~lLn~~a~GY~~lp~~~~~~~d~~~~~~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e~ge~~dsn~~~~~~~d 687 (968)
T KOG1060|consen 608 LLLNAPAPGYEPLPNWPAVAPDPFPDSERAKLLDSDSEEEETGDDESWSDPESESGESSNFSREGGEENDSNEEKDSEDD 687 (968)
T ss_pred HHhcCcCcCCccCCCccccCCCCCcchhhcccccCCccccccccccCCCCCccccccCCccccccccccccccccccccc
Confidence 22566677776655443211111 00 000000000000 00000 000000 000 0
Q ss_pred CCCCCCC--CCCCCCCCCCCC----CCCCCCC------------------------CCCCCCcccccccCCCCCCcccCC
Q 002996 574 ASPQTSS--SNAPYAATRQPA----PPPAAPV------------------------SPPVPDLLGDLIGLDNSAAIVPAD 623 (860)
Q Consensus 574 ~~~~~~~--~~~~~~~~~~~~----~~~~~~~------------------------~~~~~~~~~dl~~~~~~~~~~p~~ 623 (860)
.+.|++- .+.++..+...+ ++..... .+....+..|.-++..........
T Consensus 688 ~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~~d~~~~~~~~s~~~~~ 767 (968)
T KOG1060|consen 688 FSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLAADDEFFSLTGSRNSKP 767 (968)
T ss_pred ccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhhcccccccccccccccc
Confidence 0000000 000000000000 0000000 000011111111110000000000
Q ss_pred CCCCCCCC-CccccccCCCCCCeEEEEEEEeeCCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCe
Q 002996 624 QAAASPVP-ALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTS 702 (860)
Q Consensus 624 ~~~~~~~~-~~~vl~~~~~~~gl~I~~~~~~~~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~ 702 (860)
...+...+ ...++++..+|.|+.+.|+|.|++. +.+.+.|+|+++.++.++.+ +-++|++++.+.++..++||++
T Consensus 768 ~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~~-~~i~~~~~n~~~~~~~~~~l---~~p~gm~i~ef~~i~s~~pg~~ 843 (968)
T KOG1060|consen 768 LKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLPD-VSISLHFTNKSDLELLGIHL---KLPAGMSIKEFSPIESLPPGAS 843 (968)
T ss_pred ccCCccCcchhHhhhhhcccCCcceeeeccCCCC-eeEEEecccCCCccccccee---eccccccccccccccccCCCcc
Confidence 00000011 1236777788999999999999986 89999999999999999998 4568999999999999999999
Q ss_pred eeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccccccccccCCCCChHHHHHHhccCCCCccceeecCCCccC
Q 002996 703 GRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVS 782 (860)
Q Consensus 703 ~~~~v~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~Pl~~~~~~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~~ 782 (860)
......|+|.+..+.. .|++...+ + +++++.|++++.. +..|++.+|.+....|+|++|++..+...
T Consensus 844 ~~~~~~i~F~dst~~~----~~~l~~~~--g---~~~~~~pvge~~~-~v~~~~~~~~~E~~~L~gln~~~~~l~~~--- 910 (968)
T KOG1060|consen 844 ASVVLGIDFCDSTQAA----EWQLLTDD--G---RVRFQPPVGELVQ-PVRMSEEDFKKERGKLGGLNEHVIQLENP--- 910 (968)
T ss_pred eeeeeeeeccccccce----eEEEEecc--C---cEEecCchhhhhc-cccCCHHHHHhhhhhhcccchhheeeecc---
Confidence 9999999999987765 46766654 3 7789999999995 88899999999999999999988766543
Q ss_pred CHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec-CCccEEEEEEeecCCCceEEEEecCCCchHHHHHHHHHHH
Q 002996 783 NVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP-PGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETL 857 (860)
Q Consensus 783 ~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~-~~~~~Lv~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~ 857 (860)
+...|...++.+ .. +.|+++|. ++..||+++... ++.|.|++.+++..+.+.+...
T Consensus 911 --------~~~an~~~~~~g----~~-~rFa~~tlss~~~~llT~~~k------~l~ince~~ViG~~ll~~~~~~ 967 (968)
T KOG1060|consen 911 --------NPSANVLFVPSG----SS-HRFAGQTLSSKSLVLLTVDEK------TLEINCEKTVIGSMLLNEVSNA 967 (968)
T ss_pred --------cchhhhhcccCC----cc-eeeeeeeccCCceEEEEeehh------eeEecchhhhHHHHHHHHHHhh
Confidence 111133334432 33 88999997 468899999753 8999999999999998877653
No 5
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-78 Score=665.09 Aligned_cols=495 Identities=21% Similarity=0.318 Sum_probs=423.1
Q ss_pred CCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHH
Q 002996 2 TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEY 81 (860)
Q Consensus 2 t~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~ 81 (860)
.+|||.+|+.++++|+++|++|..||+|||+++.++++++|+.+|++|+++|||+|+|.+++|+||+++|+|.++||+++
T Consensus 63 MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Emard 142 (866)
T KOG1062|consen 63 MLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARD 142 (866)
T ss_pred HhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC--chhcc
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP--IFEIT 159 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~--~~~~~ 159 (860)
+.|.|.+++++++|||||||++|+.|++++.|++++. |++.-.++|+|+||||+.+++..+.++++.++.. .|+-+
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~--f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l 220 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH--FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDL 220 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH--hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999985 9999999999999999999999999999886543 23333
Q ss_pred HHHHHHHHHHhc------------cCChhHHHHHHHHHHhccccCHHHHH---HHHHHHhhhhc-CCCh--HHHHHHHHH
Q 002996 160 SHTLSKLLTALN------------ECTEWGQVFILDALSRYKAADAREAE---NIVERVTPRLQ-HANC--AVVLSAMIL 221 (860)
Q Consensus 160 ~~~~~~Ll~~l~------------~~~~w~q~~il~~L~~~~~~~~~~~~---~ll~~v~~~l~-~~n~--aVv~~a~~~ 221 (860)
.+.+.++++.+. -++||+|++|||+|+.++..|++..+ +++..+...-. +.|. ||.|||
T Consensus 221 ~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~--- 297 (866)
T KOG1062|consen 221 VPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYEC--- 297 (866)
T ss_pred HHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHH---
Confidence 333444444442 16999999999999999877654333 33333333332 2343 677776
Q ss_pred HHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccce-EEEeccCCcHHHHHHHHHHHH
Q 002996 222 QQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMI 299 (860)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~ 299 (860)
+.+|.+...-..+...+++.|++|| +++.|+||+||+.|.+.++..|..+++|.. ++.|+.|.|.+|||||||++|
T Consensus 298 --V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~ 375 (866)
T KOG1062|consen 298 --VRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSY 375 (866)
T ss_pred --HHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3333322222334445677899987 789999999999999999999999999865 999999999999999999999
Q ss_pred HhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC-c
Q 002996 300 KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY-P 378 (860)
Q Consensus 300 ~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~-p 378 (860)
.|+|++|+..+++||++|+..+|.+|+.+++.+|..+|+||+++..|++|++++.++.+|+||.+++|..+..++.+- +
T Consensus 376 ~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~ 455 (866)
T KOG1062|consen 376 ALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQ 455 (866)
T ss_pred HHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998886 8
Q ss_pred ccHHHHHHHHHHhhc-----cCCchHHHHHHHHHHhhcccccCC-----------HH---HHHHHHHhhCCCCcHHHHHH
Q 002996 379 NTYESIIATLCESLD-----TLDEPEAKASMIWIIGEYAERIDN-----------AD---ELLESFLESFPEEPAQVQLQ 439 (860)
Q Consensus 379 ~~~~~~i~~L~~~l~-----~~~~~~~~~~~~wilGEy~~~i~~-----------~~---~~l~~~~~~~~~e~~~v~~~ 439 (860)
+.+++++.+|+..+. ++.++...++++|+|||||++.-+ .. ++++.++.++.. +..+|.+
T Consensus 456 e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s-~~~tk~y 534 (866)
T KOG1062|consen 456 ELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSS-DSTTKGY 534 (866)
T ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccc-hHHHHHH
Confidence 999999999987653 255556688999999999987543 23 455555665544 4999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhhcCCCCCCCC
Q 002996 440 LLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDD 508 (860)
Q Consensus 440 iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~ 508 (860)
+|+|++|+..|+++ ..+.+++++... ..|.|.|+||||+||..|+.. ...+++.+++.||.++.-
T Consensus 535 al~Al~KLSsr~~s--~~~ri~~lI~~~-~~s~~~elQQRa~E~~~l~~~-~~~lr~siLe~mp~~e~~ 599 (866)
T KOG1062|consen 535 ALTALLKLSSRFHS--SSERIKQLISSY-KSSLDTELQQRAVEYNALFAK-DKHLRKSILERMPSCEDI 599 (866)
T ss_pred HHHHHHHHHhhccc--cHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHH-HHHHHHHhcccCcccccc
Confidence 99999999999997 477888888864 478999999999999999974 567888999999988763
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=5e-73 Score=665.97 Aligned_cols=481 Identities=37% Similarity=0.642 Sum_probs=429.2
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002996 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~ 80 (860)
|++|+|++++|++++++++|+|+++||+||+|++.+++.++|+++|++|+++|||+|+||++||+|||+||++++++|++
T Consensus 34 ~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~ 113 (526)
T PF01602_consen 34 MMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAE 113 (526)
T ss_dssp HHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHH
T ss_pred HHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~ 160 (860)
.+.+.|.+++.|++|||||+|++|++|+|+.+|+.+++. |++.+.++|.|+|++|+.+|+.++.+| ...+.....+.+
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~ 191 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP 191 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH
Confidence 999999999999999999999999999999999999865 899999999999999999999999999 222222236778
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH--HHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHH
Q 002996 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREA--ENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLC 237 (860)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~--~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~ 237 (860)
..+++|++.+..++||+|++++++|..|.+.++.+. ..+++.+.+.+++.+++|+++| .++..+. .... +.
T Consensus 192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~--~~~~----~~ 265 (526)
T PF01602_consen 192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLS--PSPE----LL 265 (526)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSHH----HH
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhh--cchH----HH
Confidence 888898888899999999999999999999988888 7899999999999999999999 3333331 1222 45
Q ss_pred HHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhCh-hhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 002996 238 KKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP-TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFK 315 (860)
Q Consensus 238 ~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p-~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~ 315 (860)
..++++|++++ ++++|+||++|++|..++..+| .++..+...|++++++|.+||++||++|+.+++++|++.|++||.
T Consensus 266 ~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~ 345 (526)
T PF01602_consen 266 QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELL 345 (526)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHH
Confidence 56788899988 5789999999999999999994 455445556666779999999999999999999999999999999
Q ss_pred Hhhhhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhcc
Q 002996 316 EYATEV-DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDT 394 (860)
Q Consensus 316 ~y~~~~-d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~ 394 (860)
+|+++. |.+++++++++|+.+|.+++++.+||++++++++..+++++..++|..+++++.++|+.+++++..|++.+++
T Consensus 346 ~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 346 KYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLED 425 (526)
T ss_dssp HHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS
T ss_pred HHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 999655 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhcccccCC---HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChH-HHHHHHHHhcccC
Q 002996 395 LDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQ-QMIQVVLNNATVE 470 (860)
Q Consensus 395 ~~~~~~~~~~~wilGEy~~~i~~---~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~-~~i~~~l~~~~~~ 470 (860)
+.+++++++++|++||||+.+++ +.++++.+.++|..+++.||+++||+++|++.+.|++..+ .+++.+.+.+.++
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~ 505 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATED 505 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS
T ss_pred hhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccC
Confidence 99999999999999999999998 9999999999999999999999999999999999964343 6667777776667
Q ss_pred CCChHHHHHHHHHHHHhcC
Q 002996 471 TDNPDLRDRAYIYWRLLST 489 (860)
Q Consensus 471 s~~~evrdRA~~y~~ll~~ 489 (860)
|.|+||||||+||++||+.
T Consensus 506 s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 506 SSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp -SSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcc
Confidence 8899999999999999974
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-62 Score=559.14 Aligned_cols=529 Identities=40% Similarity=0.625 Sum_probs=450.2
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002996 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~ 80 (860)
|+.|+|||.+|++|+|.+++.|.++|||+|+|+.+|++.+|++++|++|+++||++|+||++||+|||+||.++.+++++
T Consensus 47 M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~ 126 (757)
T COG5096 47 MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLG 126 (757)
T ss_pred HhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~ 160 (860)
+++++|++++.|++|||||+|++|+.|+|+.+++.+.+.+....+..++.|.||.|+++|+.+|.+|.+... +
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a-------~ 199 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELA-------H 199 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhh-------h
Confidence 999999999999999999999999999999999999987899999999999999999999999999987622 1
Q ss_pred HHHHHHHHHhc-------cC-ChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH--HHHHHhhhccCh
Q 002996 161 HTLSKLLTALN-------EC-TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA--MILQQMELITST 230 (860)
Q Consensus 161 ~~~~~Ll~~l~-------~~-~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a--~~~~~l~~~~~~ 230 (860)
+.....+..+. .+ .+|.+..++..|..+.+.++.+...+.+++.+.++|.|+.|+..+ .++.++......
T Consensus 200 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~ 279 (757)
T COG5096 200 GYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSN 279 (757)
T ss_pred hHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccc
Confidence 22233332222 22 499999999999999998888888999999999999999988877 455555444332
Q ss_pred HHHHHHHHHhhhHHHhhcCCC-hhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHH
Q 002996 231 DVVRNLCKKMAPPLVTLLSAE-PEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQ 309 (860)
Q Consensus 231 ~~~~~~~~~~~~~L~~lls~~-~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~ 309 (860)
.+.....++|..++.++ ..++|+....+..+....|..+..-.+.|+|.++||.+++.++++.++.+++.+|..+
T Consensus 280 ----~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~ 355 (757)
T COG5096 280 ----NLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQ 355 (757)
T ss_pred ----cHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHH
Confidence 24445677888888755 7899999999999999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHhhhh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---hhhhhhHHHH-----HHHHH---HHHHh
Q 002996 310 VLLEFKEYATE--VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK---IKVNYVVQEA-----IIVIK---DIFRR 376 (860)
Q Consensus 310 Iv~eL~~y~~~--~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~---~~~~~v~~e~-----i~~l~---~i~~~ 376 (860)
++.|+.+|+.+ .|.+++++++++||.++.+.+.....|++.++.+++ ..++|+.+|+ |.+++ .+++.
T Consensus 356 ~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~ 435 (757)
T COG5096 356 ILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRI 435 (757)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhh
Confidence 99999999998 999999999999999999998889999999999999 9999999998 66554 67777
Q ss_pred Cccc-HHHHHHHHHHhhccCC----chHHHHHH-----HHHHhhcccccCCH-HHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 002996 377 YPNT-YESIIATLCESLDTLD----EPEAKASM-----IWIIGEYAERIDNA-DELLESFLESFPEEPAQVQLQLLTATV 445 (860)
Q Consensus 377 ~p~~-~~~~i~~L~~~l~~~~----~~~~~~~~-----~wilGEy~~~i~~~-~~~l~~~~~~~~~e~~~v~~~iLta~~ 445 (860)
+|+- .+..+..++...+.++ .|.++.++ +|++|||++.+..- ++.++.++..|.+|+.+||.+|+++.+
T Consensus 436 l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~levq~~Il~~sv 515 (757)
T COG5096 436 LPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRLEPELLRIAISNFVDETLEVQYTILMSSV 515 (757)
T ss_pred cCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 6665 3333444444334334 79988888 99999999998764 589999999999999999999999999
Q ss_pred HHhhcCCCCChH----HHHHHHHHhcccCCCChHHHHHHHHHHHHhcC-CHHHHHHhhhcCCCCCCCCc---c----cCC
Q 002996 446 KLFLKKPTEGPQ----QMIQVVLNNATVETDNPDLRDRAYIYWRLLST-DPEAAKDVVLAEKPVISDDS---N----QLD 513 (860)
Q Consensus 446 Kl~~~~p~~~~~----~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~-~~~~~~~~v~~~~p~~~~~~---~----~~~ 513 (860)
|++...+.. .. +..+.+++.|.....++|+||||.+||++++. .++....++++++|...... + ...
T Consensus 516 kl~~~~~~~-~~~~~~~~d~~v~~~~~~~v~~~DlRDra~my~~~lst~~~~~s~~i~~e~~~s~~~~~~i~~~~~~~~t 594 (757)
T COG5096 516 KLIANSIRK-AKQCNSELDQDVLRRCFDYVLVPDLRDRARMYSRLLSTPLPEFSDPILCEAKKSNSQFEIILSALLTNQT 594 (757)
T ss_pred HHHHhCcHh-hhhccchhccHHHHHHHhccCChhHHHHHHHHHHHhcCCCccccchhhhcccccccchhhhhhhhccccC
Confidence 999998764 22 35668888888888999999999999999984 66788888888866554432 1 223
Q ss_pred hHHHHHHHHh--cCcccccccCCchhhhcc
Q 002996 514 PSLLDELLAN--IATLSSVYHKPPEAFVTR 541 (860)
Q Consensus 514 ~~l~~~l~~~--~~~~~~vy~~~~~~~~~~ 541 (860)
+++++.+... +|+++++|++|+.....+
T Consensus 595 ~~~l~nl~~~~t~~~l~~~~~~~~~~l~~~ 624 (757)
T COG5096 595 PELLENLRLDFTLGTLSTIPLKPIFNLRKG 624 (757)
T ss_pred HHHHHhhhccccccceeccCCCCcccCCCC
Confidence 4445444444 499999999998875433
No 8
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-59 Score=513.03 Aligned_cols=777 Identities=16% Similarity=0.235 Sum_probs=597.4
Q ss_pred CCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHH
Q 002996 5 KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCD 84 (860)
Q Consensus 5 ~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~ 84 (860)
.++..+|+.+.|+++++|..+||++|+++..++....| .++++++++||.+..++.+|+.|||+||+|.+..|...+..
T Consensus 60 ~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised-viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~ier 138 (865)
T KOG1078|consen 60 TEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED-VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIER 138 (865)
T ss_pred hhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHH
Confidence 46788999999999999999999999999999988877 78899999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHH
Q 002996 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (860)
Q Consensus 85 ~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~ 164 (860)
.+++++.|++|.|+..|...-++++..+++.+.. |.+.+++...+.|.+|+++|+.+|++|.+++. -.+.
T Consensus 139 y~kqaivd~~~avSsaalvss~hll~~~~~~vkr--w~neiqea~~s~~~m~QyHalglLyqirk~dr--------la~s 208 (865)
T KOG1078|consen 139 YMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKR--WANEVQEAVNSDNIMVQYHALGLLYQIRKNDR--------LAVS 208 (865)
T ss_pred HHHhHeeccccccchHHHHHHhhhhcccHHHHHH--HHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH--------HHHH
Confidence 9999999999999999999999999999999985 99999999999999999999999999987653 2355
Q ss_pred HHHHHhcc---CChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHh
Q 002996 165 KLLTALNE---CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKM 240 (860)
Q Consensus 165 ~Ll~~l~~---~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~ 240 (860)
+++..+.. .+|+..+.++|........+..-...+...+..+++|+..+|.++| ..+..+......+.. ..
T Consensus 209 klv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pa 283 (865)
T KOG1078|consen 209 KLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PA 283 (865)
T ss_pred HHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hH
Confidence 55555433 5889999999988877666543344567778889999999999999 444445433222221 23
Q ss_pred hhHHHhhcC-CChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCc-HHHHHHHHHHHHHhcCcccHHHHHHHHHHhh
Q 002996 241 APPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDP-IYVKMEKLEIMIKLASDRNIDQVLLEFKEYA 318 (860)
Q Consensus 241 ~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~-~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~ 318 (860)
...|..|++ ..+-+||.|++.|++++..+|..+.-+...+..+-+|. .+|...|+..|++.++++|++.+++.+-.|+
T Consensus 284 vs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv 363 (865)
T KOG1078|consen 284 VSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFV 363 (865)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 556667775 57889999999999999999998877666666666665 9999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHhCcccHHHHHHHHHHhhccCCc
Q 002996 319 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE-AIIVIKDIFRRYPNTYESIIATLCESLDTLDE 397 (860)
Q Consensus 319 ~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e-~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~ 397 (860)
.+.+++|+.-.+.+|..++.+||.....++++|-++|+..|.+-... ++.+|..++..+|+.++.++.+||++++|+..
T Consensus 364 ~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~ 443 (865)
T KOG1078|consen 364 SDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEF 443 (865)
T ss_pred HhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999988865544 55689999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHH
Q 002996 398 PEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLR 477 (860)
Q Consensus 398 ~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evr 477 (860)
++....+..++|+-|....+|..+++.++++...|+..||+..++|++|+.+..+. .++.|..+++.|..| .|.|||
T Consensus 444 ~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--l~~sI~vllkRc~~D-~DdevR 520 (865)
T KOG1078|consen 444 TQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--LLPSILVLLKRCLND-SDDEVR 520 (865)
T ss_pred hHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--ccccHHHHHHHHhcC-chHHHH
Confidence 98888899999999999999999999999999999999999999999999977665 688899999999876 567999
Q ss_pred HHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCcccCChHHHHHHHHhcCcccccccCCchhhhccccccCCCCCCCCCCCC
Q 002996 478 DRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNG 557 (860)
Q Consensus 478 dRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (860)
|||.+|.+.+...... +..+.--....-..+|.++.+++ .|..+ +|... ...+....+..+. ...
T Consensus 521 drAtf~l~~l~~~~~~----l~~~~~~l~~s~~~le~~l~~y~---~~~~~----~~fd~---~~v~~~s~~~~~~-~~~ 585 (865)
T KOG1078|consen 521 DRATFYLKNLEEKDDV----LNQNYSGLFVSIPGLERSLVSYI---TGSFA----TPFDI---KSVPVKSQAEEPA-INL 585 (865)
T ss_pred HHHHHHHHHhhhhhhh----hcccccccccccchhHHHHHHHh---hcccc----ccchh---hcchhhccccccc-ccc
Confidence 9999999998731111 11111111111245567788886 23222 22221 2222111110000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCCCCCCCCCCccccc
Q 002996 558 SEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVL 637 (860)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~p~~~~~~~~~~~~~vl~ 637 (860)
.. . ......+..|.....+.... .-.+.+....+|.++.++. ..+++
T Consensus 586 ~~----k--~~~~~~~~~~~~~~~d~~~~----------~l~~i~~~~~lgpl~kSs~-----------------~i~LT 632 (865)
T KOG1078|consen 586 EL----K--QTLVKAPEKEKIPKVDEYAA----------ELASIPEFKALGPLFKSSR-----------------PIELT 632 (865)
T ss_pred cc----c--ccccCCCcccCCCccchhHH----------HHhccchhhhcCccccccC-----------------cceec
Confidence 00 0 00000000000000000000 0001122233444444331 22466
Q ss_pred cCCCCCCeE-EEEEEEeeCCeeEEEEEEEec-CCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeecCC-
Q 002996 638 PASTGQGLQ-IGAELTRQDGQVFYSMLFENN-TQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQN- 714 (860)
Q Consensus 638 ~~~~~~gl~-I~~~~~~~~~~~~l~l~~~N~-s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~~~- 714 (860)
+...+..++ +++.|. +|+.++|.++|+ +++.|.+..++..+ +.|+......+.++|++||..+....+++++.
T Consensus 633 E~e~e~~v~~vKh~f~---~~~V~qf~~~Ntl~d~~L~~v~vv~~~-~~~~evl~~i~~~slpy~qp~~~~tl~~~p~~~ 708 (865)
T KOG1078|consen 633 EPEAEYVVKVVKHVFK---DHVVLQFDCTNTLNDQLLENVSVVLTP-TGGEEVLEKVPTMSLPYDQPGSAFTLVEFPKDD 708 (865)
T ss_pred cccceEEeeeeehhhc---cceEEEEeccCcchHHHHhhheeeecC-CCCceeeeeccccCCCCCCCcceEEEEEcCCCC
Confidence 666666676 888885 789999999999 78999999987764 45766655667889999999999999999843
Q ss_pred -CCCC-CCCcceEEEEecCCC--Ce---EEEEeccccccccc----cCCCCChHHHHHHhccCCCCccceeecCCCccCC
Q 002996 715 -MSAG-PPSSLLQVAVKNNQQ--PV---WYFNDKISLHVLFT----EDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSN 783 (860)
Q Consensus 715 -~~~~-~~~~~l~~~~~~~~~--~~---~~~~l~~Pl~~~~~----~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~~~ 783 (860)
.... ...++++|.+++-.+ |. -.|.++|-+..+.+ ..++.-+.+|-..|..++. |...+|......+
T Consensus 709 p~~v~~sf~~tlkFtvkdcdp~TgepdedGyeDEY~LEdlevtv~D~iqkv~k~NF~aawde~~~--e~eetF~Ls~~~t 786 (865)
T KOG1078|consen 709 PWAIAEGFGNTLKFTVKDCDPNTGEPDDEGYEDEYVLEDLEVTVGDFVQKVRKSNFPAAWDELGF--EAEETFNLSTVKS 786 (865)
T ss_pred chhhhccceeeEEEEEEecCCCCCCCCccCcccceeeeceeeehhhhhhHhhcccchhhHHhcCc--chheeeeccccch
Confidence 3333 677899999986221 12 25788888777754 3335568899999999994 6666776665556
Q ss_pred H-HHHHHHHHhcCceeeeec--cCCCCc--eEEEEEEecCCccEEEEEEeecC--CCceEEEEecCCCchHHHHHHHH
Q 002996 784 V-EATLDLLAASNMFFIAKR--KNANQD--VFYFSAKIPPGVPFLIELTTVIG--NPGVKCAIKTPNPDIASLFFEAI 854 (860)
Q Consensus 784 ~-~~~~~~l~~~~~~~v~~~--~~~~~~--~~~~s~~~~~~~~~Lv~l~~~~~--~~~~~ltvrs~~~~v~~~l~~~i 854 (860)
. +++.+++.-+|+.+|.+. +++|++ +++++|.++||+.+|+|+++... +-++++++||.+..+...|...+
T Consensus 787 l~eAv~~Ii~~LgMqpcE~sd~vPenknsHtl~LsG~frgG~~vlvr~~ma~s~~~vtm~Vtvrs~e~~~vd~Iva~v 864 (865)
T KOG1078|consen 787 IQEAVKKIIDLLGMQPCERTEKVPENKNSHTLLLSGVFRGGYKVLVRAKMALSSGGITMKVTVRSEDELVVDLIVALV 864 (865)
T ss_pred HHHHHHHHHHHhCCccccccccCCCCCCceEEEEeeeeeCCceEEEeeeeeecCCCcEEEEEEecCCccHHHHHHHhc
Confidence 6 789999999999999973 455554 78899999999999999998743 36899999999999999888764
No 9
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-55 Score=477.05 Aligned_cols=474 Identities=19% Similarity=0.326 Sum_probs=405.1
Q ss_pred CCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 002996 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (860)
Q Consensus 3 ~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l 82 (860)
+|+|++|.-++++..|+|..+..||+||++...-++..+|++.|++|+++||++|+|.+-.|+||..|+++.+|+++++|
T Consensus 66 lg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDL 145 (877)
T KOG1059|consen 66 LGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDL 145 (877)
T ss_pred HcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHH
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~ 162 (860)
.++|..+|.++.|||||+|++.++|+|.++||.++. -++++.+-|.|.||+|+.+|+.+++|++..+|++++.+.+ .
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP-~ 222 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAP-L 222 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccH-H
Confidence 999999999999999999999999999999999985 7899999999999999999999999999999999888764 4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCCh-HHHHHHHHHHHhhhccC-------hHHHH
Q 002996 163 LSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC-AVVLSAMILQQMELITS-------TDVVR 234 (860)
Q Consensus 163 ~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~-aVv~~a~~~~~l~~~~~-------~~~~~ 234 (860)
+.+|+.. ..+.|..++++++++.+.|-+|+-..++++.+..++.+..+ +++||| ++++.. ++ ..
T Consensus 223 ffklltt--SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYEC-----vNTVVa~s~s~g~~d-~~ 294 (877)
T KOG1059|consen 223 FYKLLVT--SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYEC-----VNTVVAVSMSSGMSD-HS 294 (877)
T ss_pred HHHHHhc--cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHH-----HHHheeehhccCCCC-cH
Confidence 5555542 46899999999999999999999989999999988877666 466776 222211 11 11
Q ss_pred HHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccce-EEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHH
Q 002996 235 NLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLL 312 (860)
Q Consensus 235 ~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~ 312 (860)
..+.-|+..|..|+ ++|+|+||++|-++.+|+..||..++.|-. ++.|+.|.|.+||.+|||+|+.|++++|+.+||+
T Consensus 295 asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk 374 (877)
T KOG1059|consen 295 ASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVK 374 (877)
T ss_pred HHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHH
Confidence 23344566788888 689999999999999999999999999977 7899999999999999999999999999999999
Q ss_pred HHHHhhhhccH-HHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Q 002996 313 EFKEYATEVDV-DFVRKAVRAIGRCAIK----LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIAT 387 (860)
Q Consensus 313 eL~~y~~~~d~-~~~~~~i~~I~~la~k----~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~ 387 (860)
.|+.|+..++. .|+.+++..|-.+|.+ |-.+++||+.++++|.+..|..-...+...++++..+.|..|...+..
T Consensus 375 ~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~ 454 (877)
T KOG1059|consen 375 TLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQ 454 (877)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHH
Confidence 99999987776 8999999776665543 346899999999999999987777778889999988999999999988
Q ss_pred HHHhhccC----------CchHHHHHHHHHHhhcccccCCHHHHHHHHHhh-CCCCcHHHHHHHHHHHHHHhhcCCCC--
Q 002996 388 LCESLDTL----------DEPEAKASMIWIIGEYAERIDNADELLESFLES-FPEEPAQVQLQLLTATVKLFLKKPTE-- 454 (860)
Q Consensus 388 L~~~l~~~----------~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~-~~~e~~~v~~~iLta~~Kl~~~~p~~-- 454 (860)
+...+++- .-+++..+++||+|||++++.|+.++++.++.. +...+..+|...+.+++|+|...-.+
T Consensus 455 m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~e 534 (877)
T KOG1059|consen 455 MSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFE 534 (877)
T ss_pred HHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcC
Confidence 88877631 134567899999999999999999999999864 44689999999999999999864211
Q ss_pred ------ChHHH---HHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002996 455 ------GPQQM---IQVVLNNATVETDNPDLRDRAYIYWRLLS 488 (860)
Q Consensus 455 ------~~~~~---i~~~l~~~~~~s~~~evrdRA~~y~~ll~ 488 (860)
+...+ +...|... ..+.|.|||.||.+.+.++.
T Consensus 535 e~~~~e~~~sL~~~i~~~l~qf-~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 535 ETKDFEGIVSLVNLILSFLEQF-SGSSDLEVQERASEVLELIR 576 (877)
T ss_pred cccchhHHHHHHHHHHHHhhcc-cCccchhHHHHHHHHHHHHH
Confidence 11112 22233332 45789999999666665554
No 10
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-46 Score=410.44 Aligned_cols=399 Identities=23% Similarity=0.411 Sum_probs=347.8
Q ss_pred CCCCCCcccchHHHhH-hccCCCcchHHHHHHHHHHhcCCCCc-----HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC
Q 002996 1 MTVGKDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPD-----LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR 74 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~-l~~s~~~~~Krl~Yl~l~~~~~~~~e-----l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~ 74 (860)
|.-|.+++.++++|++ .+.++|.++||+.|+||....+.++| .++|++|.++|||+|||++|||..||+||.++
T Consensus 48 mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLk 127 (948)
T KOG1058|consen 48 MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLK 127 (948)
T ss_pred HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcC
Confidence 5579999999999998 69999999999999999999988864 69999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh-cCCChhHHHHHHHHHHHHhhcCCC
Q 002996 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEENSSR 153 (860)
Q Consensus 75 ~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL-~D~d~~V~~~al~~l~~i~~~~~~ 153 (860)
.+|+++.++|.|+.||.|+++||||.|++|+..+|+..-.++++ --+.+.+.| .+.||.+..+|+..|..+.+..
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD--apeLi~~fL~~e~DpsCkRNAFi~L~~~D~Er-- 203 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD--APELIESFLLTEQDPSCKRNAFLMLFTTDPER-- 203 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC--hHHHHHHHHHhccCchhHHHHHHHHHhcCHHH--
Confidence 99999999999999999999999999999999999987777775 456666654 6999999999999999986653
Q ss_pred CchhccHHHHHHHHHHhcc---CChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhccCh
Q 002996 154 PIFEITSHTLSKLLTALNE---CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITST 230 (860)
Q Consensus 154 ~~~~~~~~~~~~Ll~~l~~---~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~ 230 (860)
.+.+|...+.+ .++-+|..|++++.+-+..++.+....++++..+|++.+++|+|||. .........|
T Consensus 204 --------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa-~tlv~lS~~p 274 (948)
T KOG1058|consen 204 --------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAA-GTLVTLSNDP 274 (948)
T ss_pred --------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhc-ceEEEccCCH
Confidence 56777777654 45778999999999988888889999999999999999999999992 1112222244
Q ss_pred HHHHHHHHHhhhHHHhhc--CCChhHHHHHHHHHHHHHhhChhhhhccce-EEEeccCCcHHHHHHHHHHHHHhcCcccH
Q 002996 231 DVVRNLCKKMAPPLVTLL--SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNI 307 (860)
Q Consensus 231 ~~~~~~~~~~~~~L~~ll--s~~~niry~aL~~l~~l~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv 307 (860)
.. ++.++..++.|+ .++.|++.+.|+.|..+...+..+++.... ++..+...|..+|+++|++.+.|++..|+
T Consensus 275 ~a----lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv 350 (948)
T KOG1058|consen 275 TA----LKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV 350 (948)
T ss_pred HH----HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH
Confidence 44 445577788887 378999999999999999888888887754 56668888899999999999999999999
Q ss_pred HHHHHHHHHh-hhhc------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCccc
Q 002996 308 DQVLLEFKEY-ATEV------DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT 380 (860)
Q Consensus 308 ~~Iv~eL~~y-~~~~------d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~ 380 (860)
++|+.-|..- .... ...||..++++|..||.+||..+...|..+++.+.+.++.....++..++..++++|++
T Consensus 351 ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L 430 (948)
T KOG1058|consen 351 EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL 430 (948)
T ss_pred HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH
Confidence 9999999744 4322 24689999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC
Q 002996 381 YESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 416 (860)
Q Consensus 381 ~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~ 416 (860)
+..++.+|.+.+..+..+.+...++||+|||++-..
T Consensus 431 r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 431 RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 999999999999888888888899999999997544
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-40 Score=355.07 Aligned_cols=779 Identities=15% Similarity=0.177 Sum_probs=516.9
Q ss_pred CcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCH-HHHhHHHHHhcCCChhhhHHHHHH
Q 002996 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP-LIRALAVRTMGCIRVDKITEYLCD 84 (860)
Q Consensus 6 d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~-~ir~lALr~l~~i~~~e~~~~l~~ 84 (860)
.+..+|+.+.|+++++|..+|..+|+++..+..-..| .+|.+|++.||++..-| .++..|+|+|-++...+++.....
T Consensus 62 ~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted-vlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er 140 (898)
T COG5240 62 TATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED-VLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFER 140 (898)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh-hhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHH
Confidence 4567899999999999999999999999999998877 78999999999998777 999999999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC----------------CChhHHHHHHHHHHHHh
Q 002996 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD----------------NNPMVVANAVAALAEIE 148 (860)
Q Consensus 85 ~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D----------------~d~~V~~~al~~l~~i~ 148 (860)
.+.+++.++++.+|..|+...+|++-.+-+.+.. |.+..++..-| .++.-.++|+.+|+++.
T Consensus 141 ~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~r--w~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~k 218 (898)
T COG5240 141 YLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKR--WLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSK 218 (898)
T ss_pred HhhhhccccchhhhhhHHHHhhhhccccHHHHHH--HHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887777764 88777665432 34667899999999997
Q ss_pred hcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH-HHHHH--hh
Q 002996 149 ENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA-MILQQ--ME 225 (860)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~--l~ 225 (860)
+++... .-+.++++.......+...-+.++|....+..++++-...+...+...+++...+|.+|+ ..+.. .+
T Consensus 219 r~dkma----~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~ 294 (898)
T COG5240 219 RTDKMA----QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEE 294 (898)
T ss_pred cccHHH----HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHh
Confidence 765311 112233333333334566677777777766666654444444455556667778999998 33333 33
Q ss_pred hccChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCC-cHHHHHHHHHHHHHhcC
Q 002996 226 LITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYND-PIYVKMEKLEIMIKLAS 303 (860)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d-~~~Ik~~~L~lL~~l~~ 303 (860)
++ .++ .....+..|.+||+ ...-.||.|+|.|.+|++.+|+.+.-+...+..+-+| ..+|..-|+..|++.++
T Consensus 295 nv-~~~----~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 295 NV-GSQ----FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred cc-CHH----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 33 233 33344667888885 5668999999999999999998876665555555544 48999999999999999
Q ss_pred cccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHhCcccHH
Q 002996 304 DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE-AIIVIKDIFRRYPNTYE 382 (860)
Q Consensus 304 ~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e-~i~~l~~i~~~~p~~~~ 382 (860)
++|+..+++.+-.|+.+.++.|+.-+|.++..++.+||..-..|+++|...|...|++-.+. ++..|.+++...|+.++
T Consensus 370 ~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE 449 (898)
T COG5240 370 EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE 449 (898)
T ss_pred hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH
Confidence 99999999999999999999999999999999999999999999999999999998875554 56699999999999999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 002996 383 SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQV 462 (860)
Q Consensus 383 ~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~ 462 (860)
.+++.||+++++++.++....++.|+|+-|....+|..++++++++...|+..||.+.+.|+.|++....+.-..+.+..
T Consensus 450 raLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~ 529 (898)
T COG5240 450 RALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVEN 529 (898)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999987654435778999
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCcccCChHHHHHHHHhcCcccccccCCchhhhccc
Q 002996 463 VLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRV 542 (860)
Q Consensus 463 ~l~~~~~~s~~~evrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~vy~~~~~~~~~~~ 542 (860)
+|+.|.. +.|-||||||.+..+-+.. .++.. |.|+.+.-.--|.+-.+|...+.+ .+-...|-.+.
T Consensus 530 ~lkRcln-D~DdeVRdrAsf~l~~~~~-~da~~-------pl~~sd~~~dipsle~~l~~yIse-----~sf~t~fdvnq 595 (898)
T COG5240 530 ALKRCLN-DQDDEVRDRASFLLRNMRL-SDACE-------PLFSSDELGDIPSLELELIGYISE-----DSFATAFDVNQ 595 (898)
T ss_pred HHHHHhh-cccHHHHHHHHHHHHhhhh-hhhhh-------ccccccccCCcchhHHhhheeecc-----ccccccccccc
Confidence 9999875 5778999999999998873 22211 233332211113333333322221 01111121222
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCcccccccCCC
Q 002996 543 KTTASRTDDEDYPNGSEQGYSDAPTHVA--DEGASPQTSSSNAPYAATRQPAPPPAAPV-----SPPVPDLLGDLIGLDN 615 (860)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~dl~~~~~ 615 (860)
.+.-.+++-+...... ..+.+.. .++.+ ..|.....+ |.- .+.. +.++..-.|.+..++
T Consensus 596 v~~~tedem~a~nlk~-----kks~t~ld~te~~p----~edans~a~--pni--~tky~d~l~sieq~k~fg~lvnSs- 661 (898)
T COG5240 596 VRKFTEDEMKAINLKR-----KKSETTLDTTESVP----KEDANSKAD--PNI--KTKYADELLSIEQIKPFGQLVNSS- 661 (898)
T ss_pred cccccHhhhhhhhhhh-----ccccceecccccCC----hhhhhcccC--Ccc--chhhhhhhhhhhhhcccccccccc-
Confidence 2222111000000000 0000000 00000 000000000 000 0000 000000011111111
Q ss_pred CCCcccCCCCCCCCCCCccccccCCCCCCeE-EEEEEEeeCCeeEEEEEEEec-CCCCccceeeeeccCccCcccCCCCC
Q 002996 616 SAAIVPADQAAASPVPALPVVLPASTGQGLQ-IGAELTRQDGQVFYSMLFENN-TQTPLDGFMIQFNKNTFGLAAGGALQ 693 (860)
Q Consensus 616 ~~~~~p~~~~~~~~~~~~~vl~~~~~~~gl~-I~~~~~~~~~~~~l~l~~~N~-s~~~lt~f~v~i~~n~~gl~~~~~~~ 693 (860)
..-.+.+...+..++ +++-|. +++.++|.+.|+ ++-.+++-.+-..+ ..|-.......
T Consensus 662 ----------------r~i~LTEpeaefvVkvvKhvfk---D~lVlqF~l~NtL~~i~l~n~~vv~tp-~~~d~~ee~i~ 721 (898)
T COG5240 662 ----------------REIILTEPEAEFVVKVVKHVFK---DRLVLQFLLENTLEGIQLSNGIVVLTP-TGGDKKEESIK 721 (898)
T ss_pred ----------------CceeecCCcceeeehhhhhhhc---cceEEEEEeccchhheeeccceEEEcC-CCccchhheee
Confidence 111334443444455 666664 789999999999 66677776664432 22322222222
Q ss_pred CCccCCCCeeeEEEeeeecCCCCCC-CCCcceEEEEec---CCCCeE--EEEeccccccccccCCCCChHHHHHHhccCC
Q 002996 694 VPQLQPGTSGRTLLPMVLFQNMSAG-PPSSLLQVAVKN---NQQPVW--YFNDKISLHVLFTEDGRMERGSFLETWRSLP 767 (860)
Q Consensus 694 ~~~l~pg~~~~~~v~i~~~~~~~~~-~~~~~l~~~~~~---~~~~~~--~~~l~~Pl~~~~~~~~~~~~~~F~~~W~~l~ 767 (860)
..++..|+.+...+.+...+..... -..+.++|+.|. ..++++ .|.+++-+..++...+..-++.|.+.+.+.-
T Consensus 722 ~~qids~e~~~~~v~fk~~d~~~~eg~~~N~l~ftTkeI~~dt~epedegfqDey~id~~~i~agDfv~p~~~~nf~~~f 801 (898)
T COG5240 722 VDQIDSSEGTLSIVRFKKLDWDIEEGYVVNGLFFTTKEIEGDTSEPEDEGFQDEYSIDPFQITAGDFVRPVRIKNFPATF 801 (898)
T ss_pred hhhhccCCCceEEEEecccccccccceEeccceEEEEeecCCCCCccccccccceeccceeecccccccchhccCCccch
Confidence 3355567777777777776654433 345678888864 222223 6777777776665444444444444444333
Q ss_pred CC--ccceeecCCCccCCH-HHHHHHHHhcCceeeeeccCCCCc---eEEEEEEecCCccEEEEEEeecC-CCceEEEEe
Q 002996 768 DS--NEVLKDLPGVVVSNV-EATLDLLAASNMFFIAKRKNANQD---VFYFSAKIPPGVPFLIELTTVIG-NPGVKCAIK 840 (860)
Q Consensus 768 ~~--~E~~~~~~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~---~~~~s~~~~~~~~~Lv~l~~~~~-~~~~~ltvr 840 (860)
+. .|....+...-..+. ..+.+++...-..++...--|++. +.-+.|+..+|..+++++++... +.++.+-|-
T Consensus 802 d~l~~E~~~v~~~~~~~s~~~~~dki~ln~~~~p~e~Te~p~ds~~hvmkL~Gk~~~G~kV~~~vkMv~S~~~g~tvkV~ 881 (898)
T COG5240 802 DRLKREITFVLQGDIYASGKKILDKILLNSMKIPTEETETPNDSNTHVMKLNGKAYHGTKVSIRVKMVYSMACGCTVKVY 881 (898)
T ss_pred hccchhhhheehhhHHHHHHHHHHHHHHhhccccccccCCCCCCcceEEEEcceeccCceeeehhHHHHhhccCeEEEEE
Confidence 32 344444432110111 223333332223344432223322 33355777788899999987743 455666666
Q ss_pred cCCC
Q 002996 841 TPNP 844 (860)
Q Consensus 841 s~~~ 844 (860)
|.++
T Consensus 882 ~~gE 885 (898)
T COG5240 882 CDGE 885 (898)
T ss_pred ecCc
Confidence 6665
No 12
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=99.70 E-value=3.8e-17 Score=146.98 Aligned_cols=105 Identities=12% Similarity=0.220 Sum_probs=82.8
Q ss_pred cccCCCCChHHHHHHhccCCC-CccceeecC---CCccCCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec----CC
Q 002996 748 FTEDGRMERGSFLETWRSLPD-SNEVLKDLP---GVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP----PG 819 (860)
Q Consensus 748 ~~~~~~~~~~~F~~~W~~l~~-~~E~~~~~~---~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~----~~ 819 (860)
|++|.+|+.++|++||++|++ .+|.|..++ ...+++.+.+.++|.++|+.++. ++|||+++++.||.+- ++
T Consensus 1 F~~p~~l~~~~Ff~RWkql~~~~~E~Q~vf~~~~~~~~~~~~~~~~~l~g~~~~vl~-~vDpnp~n~v~Agi~~t~~~g~ 79 (113)
T PF02296_consen 1 FMEPTTLSSEDFFQRWKQLGGPPQEAQEVFKLKDAKRPMDLESIRRKLEGFGFAVLD-GVDPNPNNIVGAGIFHTKSSGN 79 (113)
T ss_dssp GEEE----HHHHHHHHTTT-SGGGEEEEEEE----SS---HHHHHHHHHHHTSEEET-SSSSSTTSEEEEEEEE-S-S-E
T ss_pred CCCCccCCHHHHHHHHHhccCCccccEEEEcccccCCcccHHHHHHHHhcCCeEecC-CCCCCcccEEEEEEEEecCCCc
Confidence 457899999999999999998 489899888 56678889999999999998886 6899999876655542 56
Q ss_pred ccEEEEEEeecCCCceEEEEecCCCchHHHHHHH
Q 002996 820 VPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEA 853 (860)
Q Consensus 820 ~~~Lv~l~~~~~~~~~~ltvrs~~~~v~~~l~~~ 853 (860)
+|||+|+|++.+++.|||||||+++.++..|+++
T Consensus 80 ~gcLlRlE~n~~~~~~RlTvRst~~~vs~~l~~l 113 (113)
T PF02296_consen 80 VGCLLRLEPNQDAKMFRLTVRSTDPSVSKALCKL 113 (113)
T ss_dssp EEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEEeECCcCCeEEEEEEECChhHHHHHhcC
Confidence 9999999999878899999999999999998874
No 13
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=99.45 E-value=4.3e-13 Score=123.00 Aligned_cols=111 Identities=46% Similarity=0.735 Sum_probs=85.9
Q ss_pred cccCCCCChHHHHHHhccCCCCc--cceeecCCCccCCHHHHHHHHHhcCceeeeeccCC-CCceEEEEEEecCCccEEE
Q 002996 748 FTEDGRMERGSFLETWRSLPDSN--EVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNA-NQDVFYFSAKIPPGVPFLI 824 (860)
Q Consensus 748 ~~~~~~~~~~~F~~~W~~l~~~~--E~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~-~~~~~~~s~~~~~~~~~Lv 824 (860)
|++++.|++++|.++|+++++.+ |.+.... ....+.+.+.++|+..|++.+++|..+ +...+|+|+++.+|..+|+
T Consensus 1 f~~d~~~~~~~F~~~W~sl~~~~~~e~~~~~~-~~~~~~~~i~~~L~~~nI~~iA~~~~~~~~~~~y~s~~~~~~~~fL~ 79 (114)
T PF09066_consen 1 FVEDGSMDPEEFQEMWKSLPDSNQQELSIQLN-ASVPSPDAIEEKLQANNIFTIASGKVDNGQKFFYFSAKTTNGIWFLV 79 (114)
T ss_dssp B-TT----HHHHHHHHHHS-GGG--EEEEEET-T----HHHHHHHHHCTT-EEEEEEECTT-EEEEEEEEEBTTS-EEEE
T ss_pred CCCCCccCHHHHHHHHHhCCcccceEEEEecc-ccCCcHHHHHHHHHHCCEEEEecCCCCccccEEEEEEEcCCCcEEEE
Confidence 45789999999999999999877 5555555 355788999999999999999987655 5889999999999999999
Q ss_pred EEEeecCCCceEEEEecCCCchHHHHHHHHHHHHh
Q 002996 825 ELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLK 859 (860)
Q Consensus 825 ~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~l~ 859 (860)
++.++.++..+++++||+++.+++++.+++..+|+
T Consensus 80 El~~~~~~~~~~v~vK~~~~~~~~~f~~~~~~iL~ 114 (114)
T PF09066_consen 80 ELTIDPGSPSVKVTVKSENPEMAPLFLQLFESILK 114 (114)
T ss_dssp EEEE-TT-SSEEEEEEESSCCCHHHHHHHHHHHCC
T ss_pred EEEEcCCCccEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 99999877789999999999999999999999874
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.38 E-value=3.5e-11 Score=141.68 Aligned_cols=381 Identities=16% Similarity=0.250 Sum_probs=168.7
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~ 160 (860)
.+...+.+++.+++..+||-+.+++..+...+|+.+.- .++.+.+=|.++|+.+.+.|+.++..+... ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l--~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~------~~~~ 113 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL--IINSLQKDLNSPNPYIRGLALRTLSNIRTP------EMAE 113 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH--HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH------HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH--HHHHHHHhhcCCCHHHHHHHHhhhhhhccc------chhh
Confidence 34444555555555555555555555555555553331 344455445555555555555555555311 1222
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-HHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHH
Q 002996 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-IVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCK 238 (860)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~ 238 (860)
..+..+.+.+.+.+|..+-+.+-.+.++...+++.... +++.+...+...+++|+.+| .++..+. ..++....+..
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~--~~~~~~~~~~~ 191 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIK--CNDDSYKSLIP 191 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHH--CTHHHHTTHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHc--cCcchhhhhHH
Confidence 23333344444555555544444444433333333322 45555555555555555554 1222220 11221112222
Q ss_pred HhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhh--hccce-EEEeccCCcHHHHHHHHHHHHHhcCccc-HHHHHHH
Q 002996 239 KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL--AHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRN-IDQVLLE 313 (860)
Q Consensus 239 ~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~--~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~N-v~~Iv~e 313 (860)
.+...|.+++ ..+|-.+...++.+..+....+... ...+. +..++.+...+|...+..++..+..... +..+++-
T Consensus 192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~ 271 (526)
T PF01602_consen 192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINP 271 (526)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHH
Confidence 3333344433 2345555555555555444333222 11111 1122234445555566666555555443 4555555
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhh
Q 002996 314 FKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK-IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL 392 (860)
Q Consensus 314 L~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~-~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l 392 (860)
|..++.+.|.+.+--++..|..++.+.++... .....+..+. ....++...++..+..+.. ++-...++..|.+++
T Consensus 272 L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~Il~eL~~~l 348 (526)
T PF01602_consen 272 LIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKEILDELLKYL 348 (526)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhccc--ccchhhHHHHHHHHH
Confidence 55555555555555555555555555432222 2222333333 3344455555555544442 222334555555555
Q ss_pred ccCCchHHHHHHHHHHhhcccccC-CHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCC
Q 002996 393 DTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVET 471 (860)
Q Consensus 393 ~~~~~~~~~~~~~wilGEy~~~i~-~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s 471 (860)
.+..+++.+..++--+|..+.... ++..+++.+.+-+...+..+...++..+.++..+.|+. ....+..+++... +-
T Consensus 349 ~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~-~~~~l~~L~~~l~-~~ 426 (526)
T PF01602_consen 349 SELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL-REKILKKLIELLE-DI 426 (526)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT-HHHHHHHHHHHHT-SS
T ss_pred HhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh-hHHHHHHHHHHHH-Hh
Confidence 333344444444444444443322 23344444444333344444555555555555555542 2334444444422 23
Q ss_pred CChHH
Q 002996 472 DNPDL 476 (860)
Q Consensus 472 ~~~ev 476 (860)
.++++
T Consensus 427 ~~~~~ 431 (526)
T PF01602_consen 427 SSPEA 431 (526)
T ss_dssp SSHHH
T ss_pred hHHHH
Confidence 44454
No 15
>PTZ00429 beta-adaptin; Provisional
Probab=99.15 E-value=7.1e-08 Score=114.63 Aligned_cols=332 Identities=14% Similarity=0.119 Sum_probs=152.4
Q ss_pred HHHHhhcCCCCHHHHhHHHHHh-cCC-ChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 002996 49 NTFVKDSQDPNPLIRALAVRTM-GCI-RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (860)
Q Consensus 49 n~l~kDl~~~n~~ir~lALr~l-~~i-~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (860)
+-|++.|+++|..-+--|++.+ +.+ ...++ ..+.+.|.+++.+.+.-+||-..+.+....+..||...- .++.+.
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL--aINtl~ 111 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL--AVNTFL 111 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH--HHHHHH
Confidence 4456666666666665565532 222 12333 345556666777777777777777777766666665331 456666
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHH--HHHHHHHHh
Q 002996 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE--AENIVERVT 204 (860)
Q Consensus 127 ~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~--~~~ll~~v~ 204 (860)
+=+.|+||.+.+.|+..+..|... .+....+..+.+.+.+.+|+..-...=.+.++...+++. ...+++.+.
T Consensus 112 KDl~d~Np~IRaLALRtLs~Ir~~------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~ 185 (746)
T PTZ00429 112 QDTTNSSPVVRALAVRTMMCIRVS------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLV 185 (746)
T ss_pred HHcCCCCHHHHHHHHHHHHcCCcH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHH
Confidence 666677777777777766665321 122223344444556666765544333333222222222 123445555
Q ss_pred hhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChhhhhccce-EEE
Q 002996 205 PRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK-VFF 281 (860)
Q Consensus 205 ~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~~~~~~-~~~ 281 (860)
.+|...|++|+.+| .++..+... .++.. .+.......|+..+. -++=.|...|+.|.........-...-+. +.-
T Consensus 186 ~LL~D~dp~Vv~nAl~aL~eI~~~-~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~ 263 (746)
T PTZ00429 186 ELLNDNNPVVASNAAAIVCEVNDY-GSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLP 263 (746)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHh-Cchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 56666777777666 223223211 11111 111111222223232 23334445555543321111100000000 111
Q ss_pred eccCCcHHHHHHHHHHHHHhcCccc---HHHHHHHHHH---hhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002996 282 CKYNDPIYVKMEKLEIMIKLASDRN---IDQVLLEFKE---YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELI 355 (860)
Q Consensus 282 ~l~~d~~~Ik~~~L~lL~~l~~~~N---v~~Iv~eL~~---y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll 355 (860)
++.+....|-..++.+++.+.+..+ ++.++..+.. .+...+.+.+--+++.|..++.+++......++...-..
T Consensus 264 ~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~ 343 (746)
T PTZ00429 264 RMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRY 343 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhccc
Confidence 2333445666666666666654321 2222222221 233445555555666666666655544433333332222
Q ss_pred HhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhcc
Q 002996 356 KIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDT 394 (860)
Q Consensus 356 ~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~ 394 (860)
.+ ..||....+..+..+. +++--..++..|.++..+
T Consensus 344 ~D-p~yIK~~KLeIL~~La--ne~Nv~~IL~EL~eYa~d 379 (746)
T PTZ00429 344 SD-PPFVKLEKLRLLLKLV--TPSVAPEILKELAEYASG 379 (746)
T ss_pred CC-cHHHHHHHHHHHHHHc--CcccHHHHHHHHHHHhhc
Confidence 22 2345555555444443 233334455555555443
No 16
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=99.14 E-value=4.7e-10 Score=104.27 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=75.0
Q ss_pred CccccccCCCCCCeEEEEEEEeeCC-----eeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEE
Q 002996 632 ALPVVLPASTGQGLQIGAELTRQDG-----QVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTL 706 (860)
Q Consensus 632 ~~~vl~~~~~~~gl~I~~~~~~~~~-----~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~ 706 (860)
...++++...|+||.|.|+|.|+++ +..++++|+|+++.+++++++.-++-.-|+.++.+..++.|+||++++..
T Consensus 56 k~~eLL~~v~G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~ 135 (145)
T PF14796_consen 56 KKYELLNRVNGKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVS 135 (145)
T ss_pred ceEEeeeccCCCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEE
Confidence 3668999999999999999999763 56899999999999999999954443569999999999999999999999
Q ss_pred EeeeecCCCC
Q 002996 707 LPMVLFQNMS 716 (860)
Q Consensus 707 v~i~~~~~~~ 716 (860)
+.|+|++..+
T Consensus 136 lgIDF~DStQ 145 (145)
T PF14796_consen 136 LGIDFNDSTQ 145 (145)
T ss_pred EEEecccCCC
Confidence 9999998653
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.04 E-value=3.7e-08 Score=122.15 Aligned_cols=271 Identities=18% Similarity=0.159 Sum_probs=148.1
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~ 127 (860)
++.|..-|.|++|.+|-.|+..|+.+..++.++ .+.++|.|+++.||..|+.++.++-...+. .+.+..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~----~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~ 691 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGP----ALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRD 691 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHH----HHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHH
Confidence 456666677777777777777777777655433 345666777777777777777665332221 134556
Q ss_pred hhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhh
Q 002996 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (860)
Q Consensus 128 lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l 207 (860)
+|.|.|+.|..+|+.+|..+...+ ...|+..|.+.+++.+...++.|...... +.+...+
T Consensus 692 ~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~---------~~l~~~l 751 (897)
T PRK13800 692 HLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV---------ESVAGAA 751 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc---------HHHHHHh
Confidence 666777777777776666653211 12344556677777777777766654321 1233456
Q ss_pred cCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCC
Q 002996 208 QHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYND 286 (860)
Q Consensus 208 ~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d 286 (860)
.+.++.|..+++ ..|..+...+. ...+.|..++ +.++++|..++..|..+.... ..... ....+.++
T Consensus 752 ~D~~~~VR~~aa--~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~~~~~---l~~aL~d~ 819 (897)
T PRK13800 752 TDENREVRIAVA--KGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCPP-DDVAA---ATAALRAS 819 (897)
T ss_pred cCCCHHHHHHHH--HHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hhHHH---HHHHhcCC
Confidence 666666666551 12222222111 0123455555 356777777777776654221 11100 11124455
Q ss_pred cHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHH
Q 002996 287 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEA 366 (860)
Q Consensus 287 ~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~ 366 (860)
+..||..+++.|..+.+++- +.-|..-+.+.+..+|..++.+++.+. . .....+.|.+.++.....|..++
T Consensus 820 d~~VR~~Aa~aL~~l~~~~a----~~~L~~~L~D~~~~VR~~A~~aL~~~~--~---~~~a~~~L~~al~D~d~~Vr~~A 890 (897)
T PRK13800 820 AWQVRQGAARALAGAAADVA----VPALVEALTDPHLDVRKAAVLALTRWP--G---DPAARDALTTALTDSDADVRAYA 890 (897)
T ss_pred ChHHHHHHHHHHHhccccch----HHHHHHHhcCCCHHHHHHHHHHHhccC--C---CHHHHHHHHHHHhCCCHHHHHHH
Confidence 66677777777776655432 344444456666677777777776541 1 12334455555655555555555
Q ss_pred HHHH
Q 002996 367 IIVI 370 (860)
Q Consensus 367 i~~l 370 (860)
+..|
T Consensus 891 ~~aL 894 (897)
T PRK13800 891 RRAL 894 (897)
T ss_pred HHHH
Confidence 4443
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.02 E-value=1.4e-06 Score=111.33 Aligned_cols=471 Identities=15% Similarity=0.124 Sum_probs=279.3
Q ss_pred chHHHhHhccCC---CcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhH
Q 002996 10 LFTDVVNCMQTE---NLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKIT 79 (860)
Q Consensus 10 ~f~~vi~l~~s~---~~~~Krl~Yl~l~~~~~~~~el~~L-----~in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~ 79 (860)
..+..+.++.+. |..+++..-.++.+++..+++..-. ++..+.+=|++.|+..+..|..++.++. .++..
T Consensus 145 aVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~ 224 (2102)
T PLN03200 145 VVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSI 224 (2102)
T ss_pred ChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 345556666654 3344555566777777776654333 4566777788889998888888776653 23333
Q ss_pred -----HHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCC---------hhHHHHHH
Q 002996 80 -----EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNN---------PMVVANAV 141 (860)
Q Consensus 80 -----~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~D~d---------~~V~~~al 141 (860)
.-.++.+.+++.+ .++.||..|+.++.-+...+++. +.+.+-++.|.+++...+ ....-+|+
T Consensus 225 ~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~Av 304 (2102)
T PLN03200 225 SKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAM 304 (2102)
T ss_pred HHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHH
Confidence 2347788888975 67799999999998888766543 334567788888876433 44578899
Q ss_pred HHHHHHhhcCCCCchhccHHHHHHHHHHhccC--------ChhHHHHHHHHHHhccccCHHHH---HHHHHHHhhhhcCC
Q 002996 142 AALAEIEENSSRPIFEITSHTLSKLLTALNEC--------TEWGQVFILDALSRYKAADAREA---ENIVERVTPRLQHA 210 (860)
Q Consensus 142 ~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~--------~~w~q~~il~~L~~~~~~~~~~~---~~ll~~v~~~l~~~ 210 (860)
.+|..|+...+ +.+..|.+.+..+ .-|...+++.++..- .+.... ..+...+..+++|.
T Consensus 305 wALsNIcgg~~--------~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~--~~~~~~i~~~~v~~~LV~Llr~k 374 (2102)
T PLN03200 305 GALANICGGMS--------ALILYLGELSESPRSPAPIADTLGALAYALMVFDSS--AESTRAFDPTVIEQILVKLLKPR 374 (2102)
T ss_pred HHHHHHhCCch--------hhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCc--hhhhhhccccccHHHHHHHhCCC
Confidence 99988876432 1122222222111 013333332222100 000000 00112222333333
Q ss_pred ------------------------------------------ChHHHHHHHHHHHhhhcc--ChHHHHHHHH-HhhhHHH
Q 002996 211 ------------------------------------------NCAVVLSAMILQQMELIT--STDVVRNLCK-KMAPPLV 245 (860)
Q Consensus 211 ------------------------------------------n~aVv~~a~~~~~l~~~~--~~~~~~~~~~-~~~~~L~ 245 (860)
+.-+.-.+ ..++.++. +.+..+.+.. ..++.|+
T Consensus 375 ~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~A--v~aL~~L~~~~~e~~~aIi~~ggIp~LV 452 (2102)
T PLN03200 375 DTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEEL--IRALSSLCCGKGGLWEALGGREGVQLLI 452 (2102)
T ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHH--HHHHHHHhCCCHHHHHHHHHcCcHHHHH
Confidence 33332222 11111111 1222222222 1466788
Q ss_pred hhcC-CChhHHHHHHHHHHHHHhhChh---hhhcc--ce-EEEeccCCcHHHHHHHHHHHHHhcC-cccHHHHHH-----
Q 002996 246 TLLS-AEPEIQYVALRNINLIVQRRPT---ILAHE--IK-VFFCKYNDPIYVKMEKLEIMIKLAS-DRNIDQVLL----- 312 (860)
Q Consensus 246 ~lls-~~~niry~aL~~l~~l~~~~p~---~~~~~--~~-~~~~l~~d~~~Ik~~~L~lL~~l~~-~~Nv~~Iv~----- 312 (860)
.+|. .+.++|..+++.|..|+..+++ .+..+ +. .+..+.+.+..+|..|.-.|..++. ++|++.++.
T Consensus 453 ~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAI 532 (2102)
T PLN03200 453 SLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAV 532 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCH
Confidence 8884 6788999999999998865442 22111 22 2234567778999999999999884 556666553
Q ss_pred -HHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcc--cH------HH
Q 002996 313 -EFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN--TY------ES 383 (860)
Q Consensus 313 -eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~--~~------~~ 383 (860)
-|.+.+++.+...+..++.+|+.++.... ...+..++.++...+..+...++..+..++.--.. .+ ..
T Consensus 533 ppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d---~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g 609 (2102)
T PLN03200 533 PALLWLLKNGGPKGQEIAAKTLTKLVRTAD---AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND 609 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccc---hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc
Confidence 46778888889999999999999876432 23456677888777766666666666555442111 11 23
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHhhcccccCCH------HHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChH
Q 002996 384 IIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA------DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQ 457 (860)
Q Consensus 384 ~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~------~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~ 457 (860)
+++.|.+.++. ..+..++.++|+|+.|+..-.+. ...+..++......+.++|...-.|+..++.....++..
T Consensus 610 gL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~ 688 (2102)
T PLN03200 610 ALRTLIQLLSS-SKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKV 688 (2102)
T ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHH
Confidence 67788887764 45678888999999998633221 122344455555667788888888888887532221111
Q ss_pred -----HHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhh
Q 002996 458 -----QMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVV 498 (860)
Q Consensus 458 -----~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~~~~~~~v 498 (860)
..+..+.++. .+.|.++++-|..-...+-.+++...++.
T Consensus 689 ~~v~~GaV~pL~~LL--~~~d~~v~e~Al~ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 689 SYAAEDAIKPLIKLA--KSSSIEVAEQAVCALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHHcCCHHHHHHHH--hCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence 1244556654 34678999999988766665666555544
No 19
>PRK09687 putative lyase; Provisional
Probab=99.00 E-value=3.2e-08 Score=105.40 Aligned_cols=251 Identities=17% Similarity=0.154 Sum_probs=157.2
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 002996 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (860)
Q Consensus 46 L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (860)
..++.|.+=|.|+|..+|..|+.+|+.++.++..+. +.+++.|.++.||+.|+-++..+-..... ....++.|
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L 95 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNIL 95 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHH
Confidence 345677788899999999999999999998776655 56678999999999999999987532111 11356777
Q ss_pred HHh-hcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHh
Q 002996 126 KDL-ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVT 204 (860)
Q Consensus 126 ~~l-L~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~ 204 (860)
..+ ++|+++.|..+|+.+|-+++.... .|. ...++.+.
T Consensus 96 ~~l~~~D~d~~VR~~A~~aLG~~~~~~~----------------------~~~-------------------~~a~~~l~ 134 (280)
T PRK09687 96 NNLALEDKSACVRASAINATGHRCKKNP----------------------LYS-------------------PKIVEQSQ 134 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccccccc----------------------ccc-------------------hHHHHHHH
Confidence 766 789999999999999988753321 010 01122222
Q ss_pred hhhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEec
Q 002996 205 PRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCK 283 (860)
Q Consensus 205 ~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l 283 (860)
..+.+.++.|.+.+ ..++..+.+++ ..+.|+.+| +.++.+|+.+..+|..+....|..+..- +..+
T Consensus 135 ~~~~D~~~~VR~~a--~~aLg~~~~~~--------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L---~~~L 201 (280)
T PRK09687 135 ITAFDKSTNVRFAV--AFALSVINDEA--------AIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAF---VAML 201 (280)
T ss_pred HHhhCCCHHHHHHH--HHHHhccCCHH--------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHH---HHHh
Confidence 33455566666655 23344333332 244566666 3567777777777777633334332211 1123
Q ss_pred cCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hhhhhh
Q 002996 284 YNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK-IKVNYV 362 (860)
Q Consensus 284 ~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~-~~~~~v 362 (860)
.+++..||..++.-|-.+.++. .++-|.+++.+.+ ++..++.++|.++.+ ..+..|.+++. ....++
T Consensus 202 ~D~~~~VR~~A~~aLg~~~~~~----av~~Li~~L~~~~--~~~~a~~ALg~ig~~------~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRKDKR----VLSVLIKELKKGT--VGDLIIEAAGELGDK------TLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred cCCChHHHHHHHHHHHccCChh----HHHHHHHHHcCCc--hHHHHHHHHHhcCCH------hHHHHHHHHHhhCCChhH
Confidence 5666788888888887777654 4444444444433 566777777776652 45666777665 444444
Q ss_pred HHHHHHH
Q 002996 363 VQEAIIV 369 (860)
Q Consensus 363 ~~e~i~~ 369 (860)
...++..
T Consensus 270 ~~~a~~a 276 (280)
T PRK09687 270 ITKAIDK 276 (280)
T ss_pred HHHHHHH
Confidence 4444433
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.97 E-value=1.4e-07 Score=116.94 Aligned_cols=256 Identities=18% Similarity=0.170 Sum_probs=165.1
Q ss_pred HHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHH
Q 002996 60 PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (860)
Q Consensus 60 ~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~ 139 (860)
+..|-+|+.+| ..+ ..+.+.+.|.|.+|.||+.|+.++.++.. | ..++.|..+|+|.|+.|...
T Consensus 608 ~~~~~~~~~~l---~~~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~------~~~~~L~~aL~D~d~~VR~~ 671 (897)
T PRK13800 608 PSPRILAVLAL---DAP-----SVAELAPYLADPDPGVRRTAVAVLTETTP--P------GFGPALVAALGDGAAAVRRA 671 (897)
T ss_pred chHHHHHHHhc---cch-----hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--h------hHHHHHHHHHcCCCHHHHHH
Confidence 34555677776 222 23456788889999999999999998742 2 36788889999999999999
Q ss_pred HHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 002996 140 AVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAM 219 (860)
Q Consensus 140 al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a~ 219 (860)
|+.+|.++....+. ...|...|.+.+++.+..+++.|......+. ..+...|++.++.|..+|+
T Consensus 672 Aa~aL~~l~~~~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR~~Av 735 (897)
T PRK13800 672 AAEGLRELVEVLPP---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVRIEAV 735 (897)
T ss_pred HHHHHHHHHhccCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHHHHHH
Confidence 99999888543221 2345556677888999888888877654332 1234567788888887772
Q ss_pred HHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHH
Q 002996 220 ILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 298 (860)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL 298 (860)
..+..+... ..|..++ ..++++|..+...|..+....+..+..- ...+.|++..||..++..|
T Consensus 736 --~aL~~~~~~-----------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L---~~ll~D~d~~VR~aA~~aL 799 (897)
T PRK13800 736 --RALVSVDDV-----------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAV---RALTGDPDPLVRAAALAAL 799 (897)
T ss_pred --HHHhcccCc-----------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH---HHHhcCCCHHHHHHHHHHH
Confidence 233322221 1244555 4678888888888887765443211110 1224466677888888888
Q ss_pred HHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 002996 299 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKD 372 (860)
Q Consensus 299 ~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~ 372 (860)
-.+.++..+ ...|...+.+.|..+|..++.+++.+.. ...++.|+.+|.+....|..+++..|..
T Consensus 800 g~~g~~~~~---~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 800 AELGCPPDD---VAAATAALRASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HhcCCcchh---HHHHHHHhcCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 877765332 2345556667777777777777775442 2344556666665555555555555544
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.90 E-value=7.9e-07 Score=113.63 Aligned_cols=426 Identities=17% Similarity=0.179 Sum_probs=280.1
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCCCcHHH-----HHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhH-----HH
Q 002996 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAI-----LAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKIT-----EY 81 (860)
Q Consensus 14 vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~-----L~in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~-----~~ 81 (860)
.+.++.+.+.+.+.=+-..+..+.+.+.+... ..++.|.+-|.++++.+|-.|++++++|. +++-. .-
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 45566667777777777777777777666322 24678899999999999999999999885 33322 24
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~ 158 (860)
.++.+.++|.+.++.+|+.|+-++..+-...++ .+.+.+.++.|.++|++.++.+...|+.+|..+......
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~----- 563 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA----- 563 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----
Confidence 589999999999999999999999998864332 344457788899999999999999999999998764321
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHhcccc-CHHH-------HHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccC
Q 002996 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAA-DARE-------AENIVERVTPRLQHANCAVVLSA-MILQQMELITS 229 (860)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~-~~~~-------~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~ 229 (860)
..+..|+..+...++-.+..+++.|...... +.++ ...-++.+..+++|.+..+.-+| .++..+-. .+
T Consensus 564 --~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-~~ 640 (2102)
T PLN03200 564 --ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS-SR 640 (2102)
T ss_pred --hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CC
Confidence 2346666666666666777788887655321 1111 12356778888888888776555 23332311 13
Q ss_pred hHHHHH-HHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhC--h---hhhhcc-ceE-EEeccCCcHHHHHHHHHHHHH
Q 002996 230 TDVVRN-LCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR--P---TILAHE-IKV-FFCKYNDPIYVKMEKLEIMIK 300 (860)
Q Consensus 230 ~~~~~~-~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~--p---~~~~~~-~~~-~~~l~~d~~~Ik~~~L~lL~~ 300 (860)
++.... +....+++|+.+|+ ++.+++.-+-.+|..+.... . .++... ++. ...+.+.+..++..+++.|..
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALan 720 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALAN 720 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 332222 23356888999884 67789999999988887421 1 122222 222 223566778899999999988
Q ss_pred hcCcc-cHH-----HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHhhhhhhH--H
Q 002996 301 LASDR-NID-----QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA--------ERCISVLLELIKIKVNYVV--Q 364 (860)
Q Consensus 301 l~~~~-Nv~-----~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~--------~~~v~~ll~ll~~~~~~v~--~ 364 (860)
++... +.. .++.-|.+++++.+++-|+.++.++..++..++.+. ..++.-|+++|+..+..+. .
T Consensus 721 Ll~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~ 800 (2102)
T PLN03200 721 LLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATS 800 (2102)
T ss_pred HHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHH
Confidence 87654 332 246778899999999999999999999998887433 1346667788876554333 3
Q ss_pred HHHHHHHHHHHh-------CcccHH-----HHHHHHHHhhccCCchHHHHHHHHHHhhccc--------ccCCHHHHHHH
Q 002996 365 EAIIVIKDIFRR-------YPNTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAE--------RIDNADELLES 424 (860)
Q Consensus 365 e~i~~l~~i~~~-------~p~~~~-----~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~--------~i~~~~~~l~~ 424 (860)
|+..++..+.+. +|.... ..+..|.+++ ....|.....++-+|...|. ++.+.+..+..
T Consensus 801 ~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~ 879 (2102)
T PLN03200 801 EALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISS 879 (2102)
T ss_pred HHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHH
Confidence 577777777763 111111 1244555555 33456665555666655543 23334455566
Q ss_pred HHhhCCC-CcHHHHH---HHHHHHHHHh
Q 002996 425 FLESFPE-EPAQVQL---QLLTATVKLF 448 (860)
Q Consensus 425 ~~~~~~~-e~~~v~~---~iLta~~Kl~ 448 (860)
+.++... .+.+||. .+|-+++|-.
T Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (2102)
T PLN03200 880 LADRIINSSSLEVKIGGTALLICAAKEH 907 (2102)
T ss_pred HHHHHhhcCCceEEecchhhhhhhhhhh
Confidence 6665544 3455553 4666666643
No 22
>PRK09687 putative lyase; Provisional
Probab=98.87 E-value=6.1e-07 Score=95.60 Aligned_cols=221 Identities=15% Similarity=0.137 Sum_probs=152.3
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhh-HHHHHHHHHhh-h
Q 002996 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI-TEYLCDPLQRC-L 90 (860)
Q Consensus 13 ~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~-~~~l~~~v~~~-l 90 (860)
+.++++..+|...+.-+--.+..+. .++.. ..+.+-++|+|+.+|..|.+.|+.++.+.- .+...+.+..+ +
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~--~~~~~----~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRG--GQDVF----RLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL 100 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC--cchHH----HHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence 3456778888888887777776553 23333 334455789999999999999999986442 23445556655 6
Q ss_pred cCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHh
Q 002996 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (860)
Q Consensus 91 ~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l 170 (860)
.|+++.||+.|+.++.++....+...+ ..++.+..++.|.|+.|...++.+|.++... ..+..|+..|
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~~~~~--~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~----------~ai~~L~~~L 168 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNPLYSP--KIVEQSQITAFDKSTNVRFAVAFALSVINDE----------AAIPLLINLL 168 (280)
T ss_pred cCCCHHHHHHHHHHHhcccccccccch--HHHHHHHHHhhCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHh
Confidence 899999999999999998543322212 3567788889999999999999999776421 4678888888
Q ss_pred ccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhcCC
Q 002996 171 NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSA 250 (860)
Q Consensus 171 ~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls~ 250 (860)
.+.++|........|......++ ...+.+...|.+.|..|..+| ...|..+.++. +++.|+..|..
T Consensus 169 ~d~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A--~~aLg~~~~~~--------av~~Li~~L~~ 234 (280)
T PRK09687 169 KDPNGDVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEA--IIGLALRKDKR--------VLSVLIKELKK 234 (280)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHH--HHHHHccCChh--------HHHHHHHHHcC
Confidence 89999999889998888744343 344556677788888888887 23454444432 35556666643
Q ss_pred ChhHHHHHHHHHHHHH
Q 002996 251 EPEIQYVALRNINLIV 266 (860)
Q Consensus 251 ~~niry~aL~~l~~l~ 266 (860)
+ .+++-+..+|..+.
T Consensus 235 ~-~~~~~a~~ALg~ig 249 (280)
T PRK09687 235 G-TVGDLIIEAAGELG 249 (280)
T ss_pred C-chHHHHHHHHHhcC
Confidence 2 24544444444443
No 23
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.83 E-value=7.8e-08 Score=95.69 Aligned_cols=145 Identities=27% Similarity=0.477 Sum_probs=110.5
Q ss_pred CHHHHhHHHHHhc--CCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhH
Q 002996 59 NPLIRALAVRTMG--CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (860)
Q Consensus 59 n~~ir~lALr~l~--~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V 136 (860)
||.+|+.|+.+|| .++-+.+++...+.+.++|.|++|+|||.|++++.++...+.-.++. .+...+..+|.|+|+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~-~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG-QLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh-hhhHHHHHHHcCCCHHH
Confidence 6899999999999 66789999999999999999999999999999999999877665554 34466667889999999
Q ss_pred HHHHHHHHHHHhhc-CCCCchhccHHHHHHHHHHhccCChhH---------HHHHHHHHHhccccCHHHHHHHHHHHhhh
Q 002996 137 VANAVAALAEIEEN-SSRPIFEITSHTLSKLLTALNECTEWG---------QVFILDALSRYKAADAREAENIVERVTPR 206 (860)
Q Consensus 137 ~~~al~~l~~i~~~-~~~~~~~~~~~~~~~Ll~~l~~~~~w~---------q~~il~~L~~~~~~~~~~~~~ll~~v~~~ 206 (860)
...|...+.++... .+. .+...+..++..+..+..|. ...+++.|-.+... ++..+.+++.+...
T Consensus 80 r~~A~~~~~e~~~~~~~~----~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNPN----IIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQR 154 (178)
T ss_pred HHHHHHHHHHHHHhccch----HHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHH
Confidence 99999999999887 332 22355666667777776654 24566666655543 34455666655555
Q ss_pred hcC
Q 002996 207 LQH 209 (860)
Q Consensus 207 l~~ 209 (860)
+.+
T Consensus 155 ~~~ 157 (178)
T PF12717_consen 155 FLN 157 (178)
T ss_pred HHH
Confidence 533
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.81 E-value=2.6e-05 Score=90.50 Aligned_cols=391 Identities=19% Similarity=0.250 Sum_probs=233.0
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCC-CCc-HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhh----H--HHHHHH
Q 002996 15 VNCMQTENLELKKLVYLYLINYAKS-QPD-LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKI----T--EYLCDP 85 (860)
Q Consensus 15 i~l~~s~~~~~Krl~Yl~l~~~~~~-~~e-l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-~~e~----~--~~l~~~ 85 (860)
..++++++-+.--++--.+..++.. .++ +.--....+++=|.|+++.||.+|++.++++. ..+. + ..+++.
T Consensus 44 f~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 44 FDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 3456666555444444334444433 232 23334466888999999999999999998863 2221 1 567889
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHhhcccc--cccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH--H
Q 002996 86 LQRCLKDDDPYVRKTAAICVAKLYDINAEL--VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS--H 161 (860)
Q Consensus 86 v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~--~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~--~ 161 (860)
|..++.|.+..|.+.|+-++.++.+..+.. +-+.+....|..++...|..+...++.++.+|...++. .+.... .
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~-~~~~~~~sg 202 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE-AAEAVVNSG 202 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH-HHHHHHhcc
Confidence 999999999999999999999998755433 21234578888999777888888999999999876532 233333 3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH-----HHHHHHHhhhhcC--CCh---HHH-HHH-HHHHHhhhccC
Q 002996 162 TLSKLLTALNECTEWGQVFILDALSRYKAADAREA-----ENIVERVTPRLQH--ANC---AVV-LSA-MILQQMELITS 229 (860)
Q Consensus 162 ~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~-----~~ll~~v~~~l~~--~n~---aVv-~~a-~~~~~l~~~~~ 229 (860)
.+..+++.+.+-|.-.|...+++|..+...+ ... ..+++.+...+.+ .++ ++. .+. ..+..+..+ +
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~ 280 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-S 280 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-C
Confidence 6888888888888899999999999887632 222 2345556666643 233 222 222 122223222 2
Q ss_pred hHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHH
Q 002996 230 TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNID 308 (860)
Q Consensus 230 ~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~ 308 (860)
+.........+...|..++ +.++..+-+|++++..|+.... ..++| .......++
T Consensus 281 ~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~-----------------------G~~~L-~~~~~~~~~ 336 (503)
T PF10508_consen 281 PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE-----------------------GKQLL-LQKQGPAMK 336 (503)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH-----------------------HHHHH-HhhcchHHH
Confidence 3222222233333444445 5788899999999998875321 11122 334566778
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-CcccHHHHHH
Q 002996 309 QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER-AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR-YPNTYESIIA 386 (860)
Q Consensus 309 ~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~-~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~-~p~~~~~~i~ 386 (860)
.+++.+..+......+++..++.+++.+-..... ..+......-.....-++.-... .+.+++++ .||.+-.+..
T Consensus 337 ~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~ 413 (503)
T PF10508_consen 337 HVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYR 413 (503)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHH
Confidence 8888888888888888988888888877533222 22222222222222211111111 44444433 2455443333
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHHhh
Q 002996 387 TLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPA---QVQLQLLTATVKLFL 449 (860)
Q Consensus 387 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~---~v~~~iLta~~Kl~~ 449 (860)
-|... +.--|.+-+... .+.+++.++++-.+.+. +-|..++.+++|...
T Consensus 414 ~l~~l----------~~~~Wg~~~i~~----~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 414 LLQAL----------AAQPWGQREICS----SPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHHH----------hcCHHHHHHHHh----CccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 22111 111266665443 45678888887665544 345556656555543
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.00022 Score=85.47 Aligned_cols=516 Identities=15% Similarity=0.178 Sum_probs=300.5
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc-CCCCHHHHhHHHHHhcCCC-------hhhhHH
Q 002996 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR-------VDKITE 80 (860)
Q Consensus 9 ~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl-~~~n~~ir~lALr~l~~i~-------~~e~~~ 80 (860)
..|-+.+.-+.|.|-..+|=+==.+...+...+ + .+.|..=+ .+.||.+|.+|.=.+-++. +.+.-+
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~----l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~ 78 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-L----LPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQ 78 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-h----HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 345566666667777777777777777666666 2 23333323 4578999999864433321 244555
Q ss_pred HHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhc-ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc
Q 002996 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (860)
Q Consensus 81 ~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~-p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~ 158 (860)
.+-..+..++.+ +.+.||||-+-.+.-+.+.. |+.-+ ++++.|....++.|+...-.|+..|..+...-+...-..
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WP--ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWP--ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchH--HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 566666666665 89999999999999998853 33111 234455566778999999999999988765433221112
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHhccccC---HHHHHH-------HHHHHhhhhcCCChH---HHHHHHHHHHhh
Q 002996 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAAD---AREAEN-------IVERVTPRLQHANCA---VVLSAMILQQME 225 (860)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~---~~~~~~-------ll~~v~~~l~~~n~a---Vv~~a~~~~~l~ 225 (860)
+....+-+.+.+.+.+-=..+.-+|.+..|.... ..+... +++.+.+.++..+.. -++++ +.+.+.
T Consensus 157 ~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~-l~El~e 235 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEA-LIELLE 235 (1075)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHH-HHHHHh
Confidence 2223333444555553337777788887665433 333322 344444455554442 33444 223332
Q ss_pred hccChHHHHHHHHHhhhHHHhhc-CC--ChhHHHHHHHHHHHHHhhChhhhhcc------------------------ce
Q 002996 226 LITSTDVVRNLCKKMAPPLVTLL-SA--EPEIQYVALRNINLIVQRRPTILAHE------------------------IK 278 (860)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~L~~ll-s~--~~niry~aL~~l~~l~~~~p~~~~~~------------------------~~ 278 (860)
. .+..++..+..+...-.... ++ ++.+|-.||+.|..++...|...+.+ ..
T Consensus 236 ~--~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~ 313 (1075)
T KOG2171|consen 236 S--EPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN 313 (1075)
T ss_pred h--chHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence 1 34444433333332222222 33 67799999999988776544322110 00
Q ss_pred --EEEe-ccCCcHHHHHHHHHHHHHh-cCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh----hhHHHHHHH
Q 002996 279 --VFFC-KYNDPIYVKMEKLEIMIKL-ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISV 350 (860)
Q Consensus 279 --~~~~-l~~d~~~Ik~~~L~lL~~l-~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ 350 (860)
...- -++++..+..++||.|..= .-+.=+..+++.+..++++.+...|..+..+|+.+++-.+ +..+..++.
T Consensus 314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0100 0223456777777766433 3344455667777788899999999999999999887554 345677778
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHh-CcccHHH----HHHHHHHhhccCCchHHHHHHHHHHhhcccccCC------HH
Q 002996 351 LLELIKIKVNYVVQEAIIVIKDIFRR-YPNTYES----IIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------AD 419 (860)
Q Consensus 351 ll~ll~~~~~~v~~e~i~~l~~i~~~-~p~~~~~----~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~------~~ 419 (860)
++..|.+....|...+...+-++-.. .|+.+++ +...|...+++-..+...+.++-.+=+|.+.+.. -+
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd 473 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD 473 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 88888888888888888888887654 3554443 3444555566666666644333233333332221 12
Q ss_pred HHHH-HHHhhCCCCcHHHHHHHHHHHHHHhhcCCCC------ChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcC--C
Q 002996 420 ELLE-SFLESFPEEPAQVQLQLLTATVKLFLKKPTE------GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST--D 490 (860)
Q Consensus 420 ~~l~-~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~------~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~--~ 490 (860)
.+++ .+.--....++.||.+.+||++-.+....+. ..-+.+.++++.+. +.+..++|=...+...++.. +
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~-~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD-DKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC-chhhHHHHhhHHHHHHHHHHHhh
Confidence 3344 2222234568999999999999887654321 12345556666543 34566777777777777753 1
Q ss_pred H----HHHH---HhhhcCCCCCCCCcccCChHHHHHHHHhcCcccccccCCchhhh
Q 002996 491 P----EAAK---DVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFV 539 (860)
Q Consensus 491 ~----~~~~---~~v~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~vy~~~~~~~~ 539 (860)
. +.+. ++...-. ...-..+..+.+.++.-.+-++.+|++....|.
T Consensus 553 ke~F~~~a~eliqll~~~~----~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L 604 (1075)
T KOG2171|consen 553 KEKFLPLAEELIQLLLELQ----GSDQDDDDPLRSYMIAFWARMCRILGDDFAPFL 604 (1075)
T ss_pred hhhhhHhHHHHHHHHHhhc----ccchhhccccHHHHHHHHHHHHHHhchhhHhHH
Confidence 1 1222 2222222 111223456777788778888999988765543
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00014 Score=87.03 Aligned_cols=423 Identities=16% Similarity=0.200 Sum_probs=261.0
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhh-ccccccc--ccHHH-HH
Q 002996 51 FVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVED--RGFLE-SL 125 (860)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~-~p~~~~~--~~~~~-~l 125 (860)
|..-|.+++-.+|.-|=+++.++-..+= +.+.+...+.. .+|-||.-|+.=+-|+..+ .+.+-.+ +.+.. .|
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL 85 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLL 85 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 4455667777779999999987653321 55556666655 8999999999999888754 3322211 12222 23
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccc---c-CHHHHHHHHH
Q 002996 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA---A-DAREAENIVE 201 (860)
Q Consensus 126 ~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~---~-~~~~~~~ll~ 201 (860)
.....++.+.|.-...-++.+|.++.-+..| +..+.-|.++....++=.+-..+++|..+.. . ...-...+..
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e~W---Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~ 162 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPEKW---PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLR 162 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccccch---HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHH
Confidence 3345678888888888888899887644434 4667778888888888888777777775532 1 1112335555
Q ss_pred HHhhhhcCCChHHHHHH--HHHHHhhhcc-ChHHHHHHHHHhhhHHH----hhcC-CChhHHHHHHHHHHHHHhhChhhh
Q 002996 202 RVTPRLQHANCAVVLSA--MILQQMELIT-STDVVRNLCKKMAPPLV----TLLS-AEPEIQYVALRNINLIVQRRPTIL 273 (860)
Q Consensus 202 ~v~~~l~~~n~aVv~~a--~~~~~l~~~~-~~~~~~~~~~~~~~~L~----~lls-~~~niry~aL~~l~~l~~~~p~~~ 273 (860)
.+...+...+..|...| .+..+..... +.+. .....-+.|.++ .++. .+...--.+|..+..++...|.++
T Consensus 163 lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~-~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 163 LFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE-VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHhccchHH-HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 56666766555576655 1222222221 1222 222233344443 3342 344556788999999999999999
Q ss_pred hccce-EE-Eec-----cCCcHHHHHHHHHHHHHhcCc------cc---HHHHHHHHHHhhhhc--c-----------HH
Q 002996 274 AHEIK-VF-FCK-----YNDPIYVKMEKLEIMIKLASD------RN---IDQVLLEFKEYATEV--D-----------VD 324 (860)
Q Consensus 274 ~~~~~-~~-~~l-----~~d~~~Ik~~~L~lL~~l~~~------~N---v~~Iv~eL~~y~~~~--d-----------~~ 324 (860)
.+|+. ++ +|+ .+=+.++|..||++|..+..- .+ ...++.-++.-+++. | ++
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 88864 22 222 233589999999999887543 11 223444444444322 1 11
Q ss_pred ---HHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHH----HHHHHHHHhhccC
Q 002996 325 ---FVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE----SIIATLCESLDTL 395 (860)
Q Consensus 325 ---~~~~~i~~I~~la~k~~~~--~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~----~~i~~L~~~l~~~ 395 (860)
-.+-+.++|-++|.+.++. ..-.+..+-.++....-+-...+...|..+....++.-+ .++...++.|.|
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D- 400 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND- 400 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC-
Confidence 3455778888888887643 345566666677766666666666666666655544332 344555556655
Q ss_pred CchHHHHHHHHHHhhcccccCC------HHHHHHHHHhhC-CCCcHHHHHHHHHHHHHHhhcCCCCChHHH----HHHHH
Q 002996 396 DEPEAKASMIWIIGEYAERIDN------ADELLESFLESF-PEEPAQVQLQLLTATVKLFLKKPTEGPQQM----IQVVL 464 (860)
Q Consensus 396 ~~~~~~~~~~wilGEy~~~i~~------~~~~l~~~~~~~-~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~----i~~~l 464 (860)
.+|.++-+++..+|+++..+.. ...++..++... ..+++.|++..-.|+.-++..++.+-..+- +.+.|
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 5788999999999999876532 112222222222 236789999999999999998876433333 33344
Q ss_pred HhcccCCCChHHHHHHHH
Q 002996 465 NNATVETDNPDLRDRAYI 482 (860)
Q Consensus 465 ~~~~~~s~~~evrdRA~~ 482 (860)
.... ++..+.||.-|.-
T Consensus 481 ~~L~-~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 481 LLLL-QSSKPYVQEQAVT 497 (1075)
T ss_pred HHHh-cCCchhHHHHHHH
Confidence 4433 5678888887753
No 27
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=4.1e-05 Score=87.44 Aligned_cols=382 Identities=14% Similarity=0.188 Sum_probs=225.1
Q ss_pred HhhcCCCCHHHHhHHHHHhcCC-ChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc
Q 002996 52 VKDSQDPNPLIRALAVRTMGCI-RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (860)
Q Consensus 52 ~kDl~~~n~~ir~lALr~l~~i-~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~ 130 (860)
+.=|.+.+.--..-|++.+-.+ ..-+=+..+.++|.|...++|+-|||-..+-+++.-...|++.-- =+..+++.|.
T Consensus 41 ~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~ 118 (968)
T KOG1060|consen 41 KQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALK 118 (968)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhc
Confidence 3345566666666677655443 322336788999999999999999999999999999999987642 3688999999
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCchhccHHHH-HHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcC
Q 002996 131 DNNPMVVANAVAALAEIEENSSRPIFEITSHTL-SKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH 209 (860)
Q Consensus 131 D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~-~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~ 209 (860)
|+|+.+.+.|+.+|..|.- ..+.+++ -.+-++..|.+|+..-..-..+.++-..++++...+.+.+..+|..
T Consensus 119 DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD 191 (968)
T KOG1060|consen 119 DPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLAD 191 (968)
T ss_pred CCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcC
Confidence 9999999999999988842 2222222 2233445678898766666666655566677777889999999988
Q ss_pred CChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhC---hhhh------------
Q 002996 210 ANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR---PTIL------------ 273 (860)
Q Consensus 210 ~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~---p~~~------------ 273 (860)
..+-|+-+|+ .++..+ .|+-++ ++.+=-..|+++|- -+.==|-+.+..|.+.+... |...
T Consensus 192 ~splVvgsAv--~AF~ev-CPerld-LIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~ 267 (968)
T KOG1060|consen 192 RSPLVVGSAV--MAFEEV-CPERLD-LIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCN 267 (968)
T ss_pred CCCcchhHHH--HHHHHh-chhHHH-HhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccccc
Confidence 8888877662 122222 233222 22222334677663 23334667777777776532 3110
Q ss_pred ---------hc-----cc----eEEE-eccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 002996 274 ---------AH-----EI----KVFF-CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIG 334 (860)
Q Consensus 274 ---------~~-----~~----~~~~-~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~ 334 (860)
.+ .. .... |+++...++-+..-.+.+.|+-..-+..|++-|..-+++ ..+.+..+.+.|.
T Consensus 268 ~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL~nIa 346 (968)
T KOG1060|consen 268 LKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVLQNIA 346 (968)
T ss_pred ccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhHHHHH
Confidence 01 11 1122 245666778888888999998888888888888876554 4556666778888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhccc
Q 002996 335 RCAIKLERAAERCISVLLELIKIKVNY-VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAE 413 (860)
Q Consensus 335 ~la~k~~~~~~~~v~~ll~ll~~~~~~-v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~ 413 (860)
.++.+-+.-.+-|+.-.. +...+.+ +.---++.+..++. ...-..++..+-.|+.+-+. +.-++++--||.++.
T Consensus 347 ~~s~~~~~lF~P~lKsFf--v~ssDp~~vk~lKleiLs~La~--esni~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 347 TISIKRPTLFEPHLKSFF--VRSSDPTQVKILKLEILSNLAN--ESNISEILRELQTYIKSSDR-SFAAAAVKAIGRCAS 421 (968)
T ss_pred HHHhcchhhhhhhhhceE--eecCCHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHH
Confidence 888875544333322110 0111111 11111223333321 11222344444444543322 233455666777766
Q ss_pred ccCC-HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCC
Q 002996 414 RIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 452 (860)
Q Consensus 414 ~i~~-~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p 452 (860)
.+.. +...|.-++.....++..|-.+....+=+|.-+.|
T Consensus 422 ~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 422 RIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred hhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 5543 33444444444444444444444443334433333
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.57 E-value=1e-05 Score=93.79 Aligned_cols=308 Identities=15% Similarity=0.202 Sum_probs=201.1
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHH-----HHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHHHH--
Q 002996 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA-----VNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYL-- 82 (860)
Q Consensus 11 f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~-----in~l~kDl~~~n~~ir~lALr~l~~i~-~~e~~~~l-- 82 (860)
...+...+.+++..+|+++--.+..+++++.....++ ...+..-+.++|..+...|.++|.++. .+.-.+.+
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~ 158 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD 158 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence 3445568889999999998888888887665433333 234667779999999999999999986 34444555
Q ss_pred ---HHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc---cccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCch
Q 002996 83 ---CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (860)
Q Consensus 83 ---~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~---~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~ 156 (860)
...+.+++..++..||-++.-++.++.+.+++... +.++++.+.+.|+++|..|..+|+-++.+++....+..+
T Consensus 159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~y 238 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQY 238 (503)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHH
Confidence 78888888888999999999999999999987654 456889999999999999999999999999884322222
Q ss_pred hccHHHHHHHHHHhcc--CCh-hHHHHH---HHHHHhccccCHHHH----HHHHHHHhhhhcCCChHHHHHHHHHHHhhh
Q 002996 157 EITSHTLSKLLTALNE--CTE-WGQVFI---LDALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSAMILQQMEL 226 (860)
Q Consensus 157 ~~~~~~~~~Ll~~l~~--~~~-w~q~~i---l~~L~~~~~~~~~~~----~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~ 226 (860)
-.-...+.+|++.+.+ .+| +.-..+ ++++......++... ..+++.+...+.+.++.....| +.+++.
T Consensus 239 L~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A--~dtlg~ 316 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVA--FDTLGQ 316 (503)
T ss_pred HHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHH
Confidence 2223467777777754 356 544443 344443333233332 4566666667777777544333 222322
Q ss_pred cc-ChHHHHHH-------HHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChh-----h---hhcc--------ce-EE
Q 002996 227 IT-STDVVRNL-------CKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT-----I---LAHE--------IK-VF 280 (860)
Q Consensus 227 ~~-~~~~~~~~-------~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~-----~---~~~~--------~~-~~ 280 (860)
+. +.+....+ ++.+...+.... +...++|--+|+++..|....+. + .... .. .+
T Consensus 317 igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 317 IGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred HhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 22 23322222 112222233333 35679999999999999654322 1 1111 11 23
Q ss_pred EeccCCc-HHHHHHHHHHHHHhcCcccHHHHHH---HHHHhhhh
Q 002996 281 FCKYNDP-IYVKMEKLEIMIKLASDRNIDQVLL---EFKEYATE 320 (860)
Q Consensus 281 ~~l~~d~-~~Ik~~~L~lL~~l~~~~Nv~~Iv~---eL~~y~~~ 320 (860)
......| +.||.-++.+|..++...-...-+. ++.+|+.+
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 3334566 8899999999999999765444332 45677743
No 29
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=2.2e-05 Score=88.00 Aligned_cols=376 Identities=18% Similarity=0.205 Sum_probs=217.7
Q ss_pred CcHHHHHHHHHHhhcCCCCHHHHhH---HHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc
Q 002996 41 PDLAILAVNTFVKDSQDPNPLIRAL---AVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (860)
Q Consensus 41 ~el~~L~in~l~kDl~~~n~~ir~l---ALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~ 117 (860)
++..--+-.+..+-+-+++++||+- -++++.+...-...+.+.+.+..+|.+++...---|.-|+.|++.-+++...
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 4445555666778888888888864 4566666666666789999999999999988889999999999988776654
Q ss_pred c-------ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccc
Q 002996 118 D-------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA 190 (860)
Q Consensus 118 ~-------~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~ 190 (860)
. .-+++++.+..+..+|.....|+..++.+....+...+.-+-+.+..|...-+|.+|-.+..+-+.|..+..
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 2 235677778888899999999999998865554433332222333333333367778777666665554432
Q ss_pred cCHH----HHHHHHHHHhhhhcCCChHHHHHHHHHH-Hhhh-ccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHH
Q 002996 191 ADAR----EAENIVERVTPRLQHANCAVVLSAMILQ-QMEL-ITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNIN 263 (860)
Q Consensus 191 ~~~~----~~~~ll~~v~~~l~~~n~aVv~~a~~~~-~l~~-~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~ 263 (860)
--++ ....+++.+..+.+..|..|.+||+-|+ ++.. -..++.......+++|.|+.=+ .++-.+-.+. +-.
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~--~~e 322 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLK--NNE 322 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhc--Ccc
Confidence 1111 2345677667777888888999994333 2211 1124455556667777776533 2332221110 000
Q ss_pred H--HHh-h----Chhhhhc--c----c----eEEEec-cCCc----HHHHH---HHHHHHHHhcCcccHHHHHHHHHHhh
Q 002996 264 L--IVQ-R----RPTILAH--E----I----KVFFCK-YNDP----IYVKM---EKLEIMIKLASDRNIDQVLLEFKEYA 318 (860)
Q Consensus 264 ~--l~~-~----~p~~~~~--~----~----~~~~~l-~~d~----~~Ik~---~~L~lL~~l~~~~Nv~~Iv~eL~~y~ 318 (860)
. .+. + .|...+. | . ..+.-- .||| -.+|+ .+||+|..+--++=...++.-|++.+
T Consensus 323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHL 402 (885)
T ss_pred ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 0 000 0 0111000 0 0 000000 0111 12332 45566655555444455555555555
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCch
Q 002996 319 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEP 398 (860)
Q Consensus 319 ~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~ 398 (860)
...+--.|+..|.++|.+|+ -|++.+..-| | .++..|...+++ +.|
T Consensus 403 ~~~~W~vrEagvLAlGAIAE-------GcM~g~~p~L----------------------p----eLip~l~~~L~D-Kkp 448 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAE-------GCMQGFVPHL----------------------P----ELIPFLLSLLDD-KKP 448 (885)
T ss_pred CcchhhhhhhhHHHHHHHHH-------HHhhhcccch----------------------H----HHHHHHHHHhcc-Ccc
Confidence 44344445555566665554 3333222211 1 245556666655 456
Q ss_pred HHHHHHHHHHhhcccccCC--H----HHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCC
Q 002996 399 EAKASMIWIIGEYAERIDN--A----DELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 452 (860)
Q Consensus 399 ~~~~~~~wilGEy~~~i~~--~----~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p 452 (860)
-++...+|-++.|+..+.. . ..++..++++..+.+..||-+.-.|++-+--...
T Consensus 449 lVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 449 LVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred ceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 6777788999999987642 2 2456667777778888899888888877755433
No 30
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=6.4e-06 Score=92.08 Aligned_cols=403 Identities=18% Similarity=0.226 Sum_probs=231.5
Q ss_pred hHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHH
Q 002996 64 ALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAV 141 (860)
Q Consensus 64 ~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al 141 (860)
+.||..|+++-..++.+.+.|-+++.|.+....||-.+++|+.-+-.=+-+-+-. ..+++.+..+|+|+-|.|..-++
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 6789999999999999999999999999999999999999999887533221110 13789999999999999977555
Q ss_pred HHHHHHhhcC-CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH----HHHHHHHhhh---hcCCChH
Q 002996 142 AALAEIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA----ENIVERVTPR---LQHANCA 213 (860)
Q Consensus 142 ~~l~~i~~~~-~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~----~~ll~~v~~~---l~~~n~a 213 (860)
=.|.....-- ..+.-+...+.+..|++++-|.+-|.|-.....++.+..+-.++. +.+++.+... -|++|--
T Consensus 456 WTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl 535 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL 535 (885)
T ss_pred eeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccee
Confidence 4444332210 011224455778888888889999999888888877653322232 2233333222 2678888
Q ss_pred HHHHHH--HHHHhhh-ccChHHHHHHHHHhhhHHHh---hcC-CChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCC
Q 002996 214 VVLSAM--ILQQMEL-ITSTDVVRNLCKKMAPPLVT---LLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYND 286 (860)
Q Consensus 214 Vv~~a~--~~~~l~~-~~~~~~~~~~~~~~~~~L~~---lls-~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d 286 (860)
++|.|+ +....+. ...+ .+++.+.+||+. +|+ +|.++ |--|+++..++..-..-|.++ ..
T Consensus 536 ILYDAIgtlAdsvg~~Ln~~----~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~--------~~ 602 (885)
T KOG2023|consen 536 ILYDAIGTLADSVGHALNKP----AYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPY--------AQ 602 (885)
T ss_pred hHHHHHHHHHHHHHHhcCcH----HHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhcccccc--------CH
Confidence 888882 2222211 1122 334556888874 565 56665 677888888876543333332 22
Q ss_pred cHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhh------hccHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHH
Q 002996 287 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT------EVDVDFVRKAVRAIGRCAIKLER------AAERCISVLLEL 354 (860)
Q Consensus 287 ~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~------~~d~~~~~~~i~~I~~la~k~~~------~~~~~v~~ll~l 354 (860)
+ +=.|..+++.+. + +++.+.. ..|.+|..-+..-+.-+++-... ...-.++.+++.
T Consensus 603 ~--Vy~Rc~~il~~t---------~-q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C 670 (885)
T KOG2023|consen 603 P--VYQRCFRILQKT---------L-QLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQC 670 (885)
T ss_pred H--HHHHHHHHHHHH---------H-HHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHH
Confidence 2 333444444321 1 1111111 12344433333333333333221 112377888888
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchH---HHHHHHHHHhhcccccCC-----HHHHHHHHH
Q 002996 355 IKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE---AKASMIWIIGEYAERIDN-----ADELLESFL 426 (860)
Q Consensus 355 l~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~---~~~~~~wilGEy~~~i~~-----~~~~l~~~~ 426 (860)
+.+....|++.+.-.+.++..-.++.-...+..++..+..--.|+ +-..++|-+||-+-.+.. ...++..+.
T Consensus 671 ~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~ 750 (885)
T KOG2023|consen 671 LQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLI 750 (885)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence 888888899988888888876543322222222222221111222 335689999999876643 122333333
Q ss_pred hhCCC--CcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc---cCCCChHHHHHHHHHH-HHhcCCHH
Q 002996 427 ESFPE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNAT---VETDNPDLRDRAYIYW-RLLSTDPE 492 (860)
Q Consensus 427 ~~~~~--e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~---~~s~~~evrdRA~~y~-~ll~~~~~ 492 (860)
.-... .+..+-.-.--++.|+..-+|++ ..+.+..+.+... ..-.|-|-.+-|+.-. .+++.+|.
T Consensus 751 ~iin~~~~~~tllENtAITIGrLg~~~Pe~-vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 751 TIINRQNTPKTLLENTAITIGRLGYICPEE-VAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred HHhcccCchHHHHHhhhhhhhhhhccCHHh-cchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch
Confidence 22111 12222222334678888888976 5566655544321 1223445566665433 45555553
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00026 Score=78.41 Aligned_cols=358 Identities=18% Similarity=0.192 Sum_probs=236.5
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcC-----CCCcHHHHHHHHHHhhcC-CCCH-----HHHhHHHHHhcC-CChhhhHHH
Q 002996 14 VVNCMQTENLELKKLVYLYLINYAK-----SQPDLAILAVNTFVKDSQ-DPNP-----LIRALAVRTMGC-IRVDKITEY 81 (860)
Q Consensus 14 vi~l~~s~~~~~Krl~Yl~l~~~~~-----~~~el~~L~in~l~kDl~-~~n~-----~ir~lALr~l~~-i~~~e~~~~ 81 (860)
+++.+..+-|+-||..-+-+..+.+ .+.+-..-++..+-+|.. +++. -..|+|..++|- .......+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 4556666667777777666665433 334556667777888873 4443 344666665542 222336788
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHH---HHHHHhhcCCCCch
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVA---ALAEIEENSSRPIF 156 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al~---~l~~i~~~~~~~~~ 156 (860)
+.++|..|+.|++.-||=-|+.+++-+.+.....+.. +.+.+.+.++..|.|.+|..+|=. ++.+|...+. .-|
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~-~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA-STF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc-ccc
Confidence 8999999999999999999999999988876544431 235566677778999999877632 2333332221 123
Q ss_pred hccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH----HHHHHHHhhhhcCCChHHHHHH--HHHHHhhhccC-
Q 002996 157 EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSA--MILQQMELITS- 229 (860)
Q Consensus 157 ~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~----~~ll~~v~~~l~~~n~aVv~~a--~~~~~l~~~~~- 229 (860)
.+ ...++-|-..+...+|.....++.-|..+....+-+. ..+++-+...|...+..|.--+ .+..++..|.+
T Consensus 164 sL-~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 164 SL-PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred CH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 32 1222222234555688888888888776543333333 2455555667777777776333 45555555443
Q ss_pred hHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhcc----c-eEEEeccCCcH-HHHHHHHH---HHH
Q 002996 230 TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHE----I-KVFFCKYNDPI-YVKMEKLE---IMI 299 (860)
Q Consensus 230 ~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~----~-~~~~~l~~d~~-~Ik~~~L~---lL~ 299 (860)
|+..+ ..+.++.++.-+ ++++++|-.||.-|..+++..|..+-.+ + .++-|+.+++. +||-.|-. .|.
T Consensus 243 P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 243 PSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred ccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 32211 123455667655 7899999999999999999887654333 2 36788877775 56655543 456
Q ss_pred HhcCcccH------HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 002996 300 KLASDRNI------DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVNYVVQEAIIV 369 (860)
Q Consensus 300 ~l~~~~Nv------~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~----~~~~~v~~ll~ll~~~~~~v~~e~i~~ 369 (860)
+++++.-- ..|++-|..|+.+...+-|..+..-|.-+-.|++. -.+....++++-|++..+.|..-+...
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 66665433 38999999999998889999988888888888764 345778889999999888888878777
Q ss_pred HHHHHH
Q 002996 370 IKDIFR 375 (860)
Q Consensus 370 l~~i~~ 375 (860)
+..|..
T Consensus 401 la~i~~ 406 (675)
T KOG0212|consen 401 LASICS 406 (675)
T ss_pred HHHHhc
Confidence 777764
No 32
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=98.46 E-value=7.1e-07 Score=80.41 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=67.2
Q ss_pred CCCeEEEEEEEeeCCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCC-CCCccCCCCeeeEEEeeeecCCCCCCCC
Q 002996 642 GQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGAL-QVPQLQPGTSGRTLLPMVLFQNMSAGPP 720 (860)
Q Consensus 642 ~~gl~I~~~~~~~~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~-~~~~l~pg~~~~~~v~i~~~~~~~~~~~ 720 (860)
.++|+|.+++.|+++.+++.++|+|+++++|++|.+++..+.+ +.....+ ..+.|+||+++++.+.+.+..++... +
T Consensus 4 ~~~l~I~~~~~~~~~~~~i~~~~~N~s~~~it~f~~~~avpk~-~~l~l~~~s~~~l~p~~~i~q~~~i~~~~~~~~~-~ 81 (104)
T smart00809 4 KNGLQIGFKFERRPGLIRITLTFTNKSPSPITNFSFQAAVPKS-LKLQLQPPSSPTLPPGGQITQVLKVENPGKFPLR-L 81 (104)
T ss_pred CCCEEEEEEEEcCCCeEEEEEEEEeCCCCeeeeEEEEEEcccc-eEEEEcCCCCCccCCCCCEEEEEEEECCCCCCEE-E
Confidence 3789999999999999999999999999999999999997764 3333333 34589999999999999988866432 2
Q ss_pred CcceEEEEec
Q 002996 721 SSLLQVAVKN 730 (860)
Q Consensus 721 ~~~l~~~~~~ 730 (860)
...+.|.+++
T Consensus 82 ~~~vsy~~~g 91 (104)
T smart00809 82 RLRLSYLLGG 91 (104)
T ss_pred EEEEEEEECC
Confidence 3344444444
No 33
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00033 Score=79.56 Aligned_cols=337 Identities=15% Similarity=0.141 Sum_probs=208.5
Q ss_pred CCcccchHHHhH-hccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHH
Q 002996 5 KDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEY 81 (860)
Q Consensus 5 ~d~s~~f~~vi~-l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~ 81 (860)
.|+..+.+.-++ -+.|+|...--++-=.++.+ ..||++.-..+-+..=|++.-||+|--|+-.|-++- =||-++.
T Consensus 104 tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~f--vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~ 181 (877)
T KOG1059|consen 104 TDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCI--VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP 181 (877)
T ss_pred ccHHHHHHHHHHHHhccCccchhhheecccccc--cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh
Confidence 344444444443 23344444333333333333 357888888888888899999999999999998864 5888999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITS 160 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~~~~~~~~~~~ 160 (860)
.+|-++.-|.|++|-|-.+|+-.+.-+-+++|.-.-. +.|.+.++|-+ +|-=|+.-.+.++..+.+-.|. +-.
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgK 255 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGK 255 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--ccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhh
Confidence 9999999999999999999999999999999987653 88999999864 4444555555555555544432 111
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcc--------ccCHHHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChH
Q 002996 161 HTLSKLLTALNECTEWGQVFILDALSRYK--------AADAREAENIVERVTPRLQHANCAVVLSA-MILQQMELITSTD 231 (860)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~il~~L~~~~--------~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~ 231 (860)
+.+..|++.+.... .-..+-+++.... +.+...+...++.+.-++..+++...|=+ ..+.-+.. +++.
T Consensus 256 KLieplt~li~sT~--AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k-tHp~ 332 (877)
T KOG1059|consen 256 KLIEPITELMESTV--AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK-THPK 332 (877)
T ss_pred hhhhHHHHHHHhhH--HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh-hCHH
Confidence 22333333322110 0001111111111 12222333344455555555555443322 22222211 1455
Q ss_pred HHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhCh--hhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHH
Q 002996 232 VVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNID 308 (860)
Q Consensus 232 ~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p--~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~ 308 (860)
.+..- ...++++|+ .|+.||.-||+.+.-|+.+.. ++++.-+..+ ...|+...|.+-+.-+..+|+.+|..
T Consensus 333 ~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~--~~ae~t~yrdell~~II~iCS~snY~ 406 (877)
T KOG1059|consen 333 AVQAH----KDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHV--EKAEGTNYRDELLTRIISICSQSNYQ 406 (877)
T ss_pred HHHHh----HHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHhhhhhhh
Confidence 44321 334567785 799999999999999987643 2333222211 34566788999999999999999988
Q ss_pred HHHHH------HHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 002996 309 QVLLE------FKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 358 (860)
Q Consensus 309 ~Iv~e------L~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~ 358 (860)
.|.+- |.+-++-.-.+.-+.+...|-.++.|.+..-...|+.+..|+...
T Consensus 407 ~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~ 462 (877)
T KOG1059|consen 407 YITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDP 462 (877)
T ss_pred hhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhch
Confidence 77663 112222222334456667788888898888888899999988844
No 34
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=98.32 E-value=3.5e-06 Score=77.45 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=60.2
Q ss_pred ccccccCCCCCCeEEEEEEEe--eCCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCC-CCCccCCCCeeeEEEee
Q 002996 633 LPVVLPASTGQGLQIGAELTR--QDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGAL-QVPQLQPGTSGRTLLPM 709 (860)
Q Consensus 633 ~~vl~~~~~~~gl~I~~~~~~--~~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~-~~~~l~pg~~~~~~v~i 709 (860)
.+++|++ ++|+|.+++.+ +++++++.++|+|++.++|++|.+++..+ -+++..-.+ ....|+||+++++.+.|
T Consensus 2 ~~~~ye~---~~l~I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avp-k~~~l~l~~~s~~~i~p~~~i~Q~~~v 77 (115)
T PF02883_consen 2 EGVLYED---NGLQIGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVP-KSFKLQLQPPSSSTIPPGQQITQVIKV 77 (115)
T ss_dssp EEEEEEE---TTEEEEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEB-TTSEEEEEESS-SSB-TTTEEEEEEEE
T ss_pred CEEEEeC---CCEEEEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEec-cccEEEEeCCCCCeeCCCCeEEEEEEE
Confidence 3567777 78999999998 89999999999999999999999999533 133333333 34588999999999999
Q ss_pred eecCCCCC
Q 002996 710 VLFQNMSA 717 (860)
Q Consensus 710 ~~~~~~~~ 717 (860)
.+ .++..
T Consensus 78 ~~-~~~~~ 84 (115)
T PF02883_consen 78 EN-SPFSE 84 (115)
T ss_dssp EE-SS-BS
T ss_pred EE-eeccc
Confidence 99 66554
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00041 Score=77.93 Aligned_cols=300 Identities=18% Similarity=0.191 Sum_probs=183.9
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHh-cC-CCCcHHHH----HHHHHHhhcC-CCCHHHHhHHHHHhcCCCh--hhhHH
Q 002996 10 LFTDVVNCMQTENLELKKLVYLYLINY-AK-SQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIRV--DKITE 80 (860)
Q Consensus 10 ~f~~vi~l~~s~~~~~Krl~Yl~l~~~-~~-~~~el~~L----~in~l~kDl~-~~n~~ir~lALr~l~~i~~--~e~~~ 80 (860)
.+..++..+-|++...+.-+--.+..+ +. .+|.+... ++..|.+-|. +.+|.++-.|-.+|.+|.. .+-..
T Consensus 67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 356667777788877644333333333 22 23443322 2344566664 5668888777777777752 33222
Q ss_pred -----HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCCh-hHHHHHHHHHHHHhhcC
Q 002996 81 -----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEENS 151 (860)
Q Consensus 81 -----~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~D~d~-~V~~~al~~l~~i~~~~ 151 (860)
...+...+++.+++..||--|+-|+..+...+|+ .+-+.+.++.|..++...++ ..+.++.-+|..++...
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 2255679999999999999999999999887664 45555777888888876665 56677888888888765
Q ss_pred -CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-----HHHHHhhhhcCCChHHHHHHHHHHHhh
Q 002996 152 -SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAMILQQME 225 (860)
Q Consensus 152 -~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-----ll~~v~~~l~~~n~aVv~~a~~~~~l~ 225 (860)
|.+-++.+.+.+.-|...+...|+-...-..-.++.+.....+.... +..++..+|.|.+..|+..| +.+++
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~Pa--LRaiG 304 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPA--LRAIG 304 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHH--Hhhcc
Confidence 66777777788888888887777766655555554443333333333 23466778888777665444 33344
Q ss_pred hcc-ChHHHHHHHH--HhhhHHHhhcC-CCh-hHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHH
Q 002996 226 LIT-STDVVRNLCK--KMAPPLVTLLS-AEP-EIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 300 (860)
Q Consensus 226 ~~~-~~~~~~~~~~--~~~~~L~~lls-~~~-niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~ 300 (860)
+|. ..+...+.+- .+.+.|..+++ ++. .+|--|..+|..|+.-++.-++.
T Consensus 305 NIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa------------------------- 359 (514)
T KOG0166|consen 305 NIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA------------------------- 359 (514)
T ss_pred ceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH-------------------------
Confidence 433 1222222211 22333444554 222 36666677776666544321110
Q ss_pred hcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 002996 301 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL 340 (860)
Q Consensus 301 l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~ 340 (860)
+.+. .++..|..-+...|...+++++.+|+.++..-
T Consensus 360 Vida----~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 360 VIDA----NLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred HHHc----ccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 0111 25666777777788888999999998877653
No 36
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00027 Score=80.60 Aligned_cols=270 Identities=15% Similarity=0.169 Sum_probs=182.8
Q ss_pred hccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHHH--HHHHhhhccChHHHHHHHHHhhhHHHhh
Q 002996 170 LNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAM--ILQQMELITSTDVVRNLCKKMAPPLVTL 247 (860)
Q Consensus 170 l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a~--~~~~l~~~~~~~~~~~~~~~~~~~L~~l 247 (860)
|.-++||..=..||+|.++. +++-.+.++..|..+|.|+++-|.-+|+ ++.....
T Consensus 108 LQHPNEyiRG~TLRFLckLk--E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~--------------------- 164 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLK--EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN--------------------- 164 (948)
T ss_pred ccCchHhhcchhhhhhhhcC--cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh---------------------
Confidence 45689999999999998864 4556678888888999999998887772 2211110
Q ss_pred cCCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHH
Q 002996 248 LSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVR 327 (860)
Q Consensus 248 ls~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~ 327 (860)
...+....|+++... ...+-|++.||.|.=.|+ .++++++-..+.+-...+.+-++.+.-
T Consensus 165 --------------~~~L~pDapeLi~~f-----L~~e~DpsCkRNAFi~L~-~~D~ErAl~Yl~~~idqi~~~~~~Lql 224 (948)
T KOG1058|consen 165 --------------FEHLIPDAPELIESF-----LLTEQDPSCKRNAFLMLF-TTDPERALNYLLSNIDQIPSFNDSLQL 224 (948)
T ss_pred --------------hhhhcCChHHHHHHH-----HHhccCchhHHHHHHHHH-hcCHHHHHHHHHhhHhhccCccHHHHH
Confidence 000111122332221 133557788899886665 478877777666666666777788888
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHH
Q 002996 328 KAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWI 407 (860)
Q Consensus 328 ~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wi 407 (860)
.++..|...+.+-|.....|+..+..+|....+.|..|+...+..+ .+.|..-+.+...+++.+.+..+.+++..+.--
T Consensus 225 ViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~l-S~~p~alk~Aa~~~i~l~~kesdnnvklIvldr 303 (948)
T KOG1058|consen 225 VIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTL-SNDPTALKAAASTYIDLLVKESDNNVKLIVLDR 303 (948)
T ss_pred HHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEc-cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHH
Confidence 8888898888877777889999999999999888888887665544 467888888888899988777777788777777
Q ss_pred HhhcccccCC-HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 002996 408 IGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRL 486 (860)
Q Consensus 408 lGEy~~~i~~-~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~l 486 (860)
|.+|...-.. -.++.-.++.-....+-+||.-.|..++++...+. ..++++.+=+ ...+..|. =+|.+..|.++
T Consensus 304 l~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN---vediv~~Lkk-e~~kT~~~-e~d~~~~yRql 378 (948)
T KOG1058|consen 304 LSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN---VEDIVQFLKK-EVMKTHNE-ESDDNGKYRQL 378 (948)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc---HHHHHHHHHH-HHHhcccc-ccccchHHHHH
Confidence 8887632221 12222233333445678899999999999988764 3444443322 22223332 46667778777
Q ss_pred hc
Q 002996 487 LS 488 (860)
Q Consensus 487 l~ 488 (860)
|-
T Consensus 379 Li 380 (948)
T KOG1058|consen 379 LI 380 (948)
T ss_pred HH
Confidence 74
No 37
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=98.17 E-value=0.0033 Score=69.81 Aligned_cols=129 Identities=23% Similarity=0.334 Sum_probs=80.0
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHhhccCC----chHHHHHHHHHHhhcccccCCH---HHHHHHHHhh------------
Q 002996 368 IVIKDIFRRYPNTYESIIATLCESLDTLD----EPEAKASMIWIIGEYAERIDNA---DELLESFLES------------ 428 (860)
Q Consensus 368 ~~l~~i~~~~p~~~~~~i~~L~~~l~~~~----~~~~~~~~~wilGEy~~~i~~~---~~~l~~~~~~------------ 428 (860)
..+-.+++.+|.+-...-..+.+.+.... ..+....++|++|||+.--.+. .++++.+.+.
T Consensus 290 s~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~~ 369 (459)
T PF14764_consen 290 SQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQSR 369 (459)
T ss_pred HHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566677788764444444555554322 2234467899999998754443 4444443321
Q ss_pred ------CCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHH----HHHH--------hcccCCCChHHHHHHHHHHHHhcCC
Q 002996 429 ------FPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQ----VVLN--------NATVETDNPDLRDRAYIYWRLLSTD 490 (860)
Q Consensus 429 ------~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~----~~l~--------~~~~~s~~~evrdRA~~y~~ll~~~ 490 (860)
....++.+-..++|+++|++.|.++ .-+.+. ++-+ .+.....+..|..||.||+.||+.
T Consensus 370 ~~~~~~~~~~~~rl~~~lmt~laKLAsr~~d--l~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~- 446 (459)
T PF14764_consen 370 RDPSASRPSSQPRLMTVLMTALAKLASRSQD--LIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKM- 446 (459)
T ss_pred ccccccCCCCchhHHHHHHHHHHHHHHhCHh--hhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcC-
Confidence 1234577788899999999999886 333332 2222 112455789999999999999986
Q ss_pred HHHHHHhhhc
Q 002996 491 PEAAKDVVLA 500 (860)
Q Consensus 491 ~~~~~~~v~~ 500 (860)
|..+. .|+.
T Consensus 447 PsvA~-~vL~ 455 (459)
T PF14764_consen 447 PSVAQ-FVLT 455 (459)
T ss_pred chHHH-HhcC
Confidence 55544 4554
No 38
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.12 E-value=0.0048 Score=70.46 Aligned_cols=435 Identities=16% Similarity=0.194 Sum_probs=217.5
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHHhhcc-ccccc-ccHHH
Q 002996 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINA-ELVED-RGFLE 123 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~-~~~VRk~A~~~l~kl~~~~p-~~~~~-~~~~~ 123 (860)
.+.+++-|..+.+||+|--.-|+.+-+...==++.+.+.++....++ ++--|.+.+-|+-++..+.. ..++. ..+++
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 46789999999999999888887776554444566777788888885 88889999999888876532 11211 13778
Q ss_pred HHHHhhcCCChhHH---HHHHHHHHHHhhcCCCCchhc----cH--------HHHHHHHHHhc-----------------
Q 002996 124 SLKDLISDNNPMVV---ANAVAALAEIEENSSRPIFEI----TS--------HTLSKLLTALN----------------- 171 (860)
Q Consensus 124 ~l~~lL~D~d~~V~---~~al~~l~~i~~~~~~~~~~~----~~--------~~~~~Ll~~l~----------------- 171 (860)
.|...|.|.+.-|. ++|+++|.+...--+...|+- +. +.+..+|+.+.
T Consensus 557 ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTre 636 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTRE 636 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHH
Confidence 88899999887664 455555555432111111110 00 01222222221
Q ss_pred ----------cCChhHHHHHHHHHHhccccCHHHH----HHHHHHHhhh-------hcCCCh------HHHHHH------
Q 002996 172 ----------ECTEWGQVFILDALSRYKAADAREA----ENIVERVTPR-------LQHANC------AVVLSA------ 218 (860)
Q Consensus 172 ----------~~~~w~q~~il~~L~~~~~~~~~~~----~~ll~~v~~~-------l~~~n~------aVv~~a------ 218 (860)
.+++-..-.+|+++.+++..+.-+. ++++..+... +...|. +|.+++
T Consensus 637 vmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~ 716 (1172)
T KOG0213|consen 637 VMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP 716 (1172)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH
Confidence 1233333444444444443221000 1111111000 001111 111111
Q ss_pred HHHHHhhhc-cChHHHHH----HH-----------------HHhhhHHHh-hcCCChhHHHHHHHHHHHHHhhChhhhhc
Q 002996 219 MILQQMELI-TSTDVVRN----LC-----------------KKMAPPLVT-LLSAEPEIQYVALRNINLIVQRRPTILAH 275 (860)
Q Consensus 219 ~~~~~l~~~-~~~~~~~~----~~-----------------~~~~~~L~~-lls~~~niry~aL~~l~~l~~~~p~~~~~ 275 (860)
++-..+... ..++..+. .+ +++...++. |-....+.. +.|..+..++.....-+++
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kp 795 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKP 795 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhcccc
Confidence 000000000 01111111 11 111111111 111111111 2223333332221111223
Q ss_pred cc-----eEEEeccCCcHHHHHHHHHHHHHhcCc-ccH--HHHHHH----HHHhhhhccHHHHHHHHHHHHHHHHhh---
Q 002996 276 EI-----KVFFCKYNDPIYVKMEKLEIMIKLASD-RNI--DQVLLE----FKEYATEVDVDFVRKAVRAIGRCAIKL--- 340 (860)
Q Consensus 276 ~~-----~~~~~l~~d~~~Ik~~~L~lL~~l~~~-~Nv--~~Iv~e----L~~y~~~~d~~~~~~~i~~I~~la~k~--- 340 (860)
|+ .++..+.+.+.-+|..+++++..++-- +++ +..+.. |.+|+.+.+++.--.++.+|..+..-.
T Consensus 796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 32 355667888999999999998776421 011 122332 357888888886665555554443322
Q ss_pred ---h------------------hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHH----HHHh-CcccHH------------
Q 002996 341 ---E------------------RAAERCISVLLELIKIKVNYVVQEAIIVIKD----IFRR-YPNTYE------------ 382 (860)
Q Consensus 341 ---~------------------~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~----i~~~-~p~~~~------------ 382 (860)
+ +..+.|++.+-.+-..+.+|+...-|.+|+- ++.. +-+.++
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 2 2334455555444444556666666665432 2211 112221
Q ss_pred ----HHHHHHHHhhccCCchH---HHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCC
Q 002996 383 ----SIIATLCESLDTLDEPE---AKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEG 455 (860)
Q Consensus 383 ----~~i~~L~~~l~~~~~~~---~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~ 455 (860)
.++..|.+.|+. ++-+ +-..++-|+|||+. +-.+|-.+.+.|..-...||.-+|.|+.-+|-.-.+-
T Consensus 956 IGPqdVLatLlnnLkv-qeRq~RvcTtvaIaIVaE~c~----pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigem- 1029 (1172)
T KOG0213|consen 956 IGPQDVLATLLNNLKV-QERQNRVCTTVAIAIVAETCG----PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEM- 1029 (1172)
T ss_pred cCHHHHHHHHHhcchH-HHHHhchhhhhhhhhhhhhcC----chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHH-
Confidence 233344444421 1111 23456789999986 4456777888888888899999999999888764431
Q ss_pred hHH---HHHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002996 456 PQQ---MIQVVLNNATVETDNPDLRDRAYIYWRLLST 489 (860)
Q Consensus 456 ~~~---~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~ 489 (860)
.++ .+.-+|+-+..| .|+-=||-|.-..+=+..
T Consensus 1030 skdYiyav~PlleDAlmD-rD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1030 SKDYIYAVTPLLEDALMD-RDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred hhhHHHHhhHHHHHhhcc-ccHHHHHHHHHHHHHHhc
Confidence 222 233456666543 677777777666555544
No 39
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.11 E-value=0.01 Score=73.16 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=119.3
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhH--HHHHHHHHhhhcCCChHH
Q 002996 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKIT--EYLCDPLQRCLKDDDPYV 97 (860)
Q Consensus 22 ~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~--~~l~~~v~~~l~d~~~~V 97 (860)
++..-++.|.|+-....-... .--..+.|.-=+..+-.-+|+-|||+|+.|. .|.+. +.+...|..-+.|++.-|
T Consensus 793 d~~~a~li~~~la~~r~f~~s-fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQS-FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHh-hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHH
Confidence 344456666665433221111 1223355555667788999999999999986 34444 777788899999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhH
Q 002996 98 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG 177 (860)
Q Consensus 98 Rk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~ 177 (860)
|-+|+--+.|..--+|+.+.. +.+.|.+-..|...+|.-.++..+.+|+...|+ |...+....+++.++.|-..-.
T Consensus 872 REAaldLvGrfvl~~~e~~~q--yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd--f~~i~~~cakmlrRv~DEEg~I 947 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQ--YYDQIIERILDTGVSVRKRVIKILRDICEETPD--FSKIVDMCAKMLRRVNDEEGNI 947 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHH--HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHHhccchhHH
Confidence 999999999999999999874 889999999999999999999999999998765 7777777888888777644434
Q ss_pred HHHHHHHHH
Q 002996 178 QVFILDALS 186 (860)
Q Consensus 178 q~~il~~L~ 186 (860)
|-.+.+.+.
T Consensus 948 ~kLv~etf~ 956 (1692)
T KOG1020|consen 948 KKLVRETFL 956 (1692)
T ss_pred HHHHHHHHH
Confidence 444455554
No 40
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0025 Score=73.68 Aligned_cols=174 Identities=18% Similarity=0.237 Sum_probs=115.9
Q ss_pred HhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHH
Q 002996 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKL 166 (860)
Q Consensus 87 ~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~L 166 (860)
.|++.+.+---+|...+|+.=+..-..|+.-- +.+.|++=|+.+|.-|++-|+++|..|+... ..+..+...
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qdvllL--ltNslknDL~s~nq~vVglAL~alg~i~s~E------mardlapeV 147 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQDLLLL--LTNSLKNDLNSSNQYVVGLALCALGNICSPE------MARDLAPEV 147 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchHHHHH--HHHHHHhhccCCCeeehHHHHHHhhccCCHH------HhHHhhHHH
Confidence 46666767667888888888777766666542 5577777778889999999999999886432 122223333
Q ss_pred HHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHH
Q 002996 167 LTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLV 245 (860)
Q Consensus 167 l~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~ 245 (860)
-+.+...+|+..-|.+-++.++....|+..+.++.....+|..++.+|...+ .++.-+-.+ +++.+.. .+++++.|+
T Consensus 148 e~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~-fr~l~~~lV 225 (866)
T KOG1062|consen 148 ERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI-SPDALSY-FRDLVPSLV 225 (866)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHH-HHHHHHHHH
Confidence 3344468999999999999999888888888888888889988889887766 222222222 3333322 233444444
Q ss_pred hhc----C------------CChhHHHHHHHHHHHHHhhCh
Q 002996 246 TLL----S------------AEPEIQYVALRNINLIVQRRP 270 (860)
Q Consensus 246 ~ll----s------------~~~niry~aL~~l~~l~~~~p 270 (860)
+.| . ++|-+|.-.|+.|..+.+.++
T Consensus 226 ~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 226 KILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred HHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 322 1 245577777777777766554
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00053 Score=77.03 Aligned_cols=259 Identities=18% Similarity=0.225 Sum_probs=180.2
Q ss_pred cchHHHhHhcc-CCCcchHHHHHHHHHHhcCCCCcHHHHHH-----HHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhHH
Q 002996 9 SLFTDVVNCMQ-TENLELKKLVYLYLINYAKSQPDLAILAV-----NTFVKDSQDPNPLIRALAVRTMGCIRV--DKITE 80 (860)
Q Consensus 9 ~~f~~vi~l~~-s~~~~~Krl~Yl~l~~~~~~~~el~~L~i-----n~l~kDl~~~n~~ir~lALr~l~~i~~--~e~~~ 80 (860)
...+..|.++. .++..++.-.--++.+++...+|..-.++ ..|.+-+.++++.++.-|.-+||+|.. +..-.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 45677788776 45577888888899999887766444443 337888999999999999999999963 33222
Q ss_pred -----HHHHHHHhhhcCCCh-HHHHHHHHHHHHHHhhc-c--cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002996 81 -----YLCDPLQRCLKDDDP-YVRKTAAICVAKLYDIN-A--ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 81 -----~l~~~v~~~l~d~~~-~VRk~A~~~l~kl~~~~-p--~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~ 151 (860)
-.++++...+...++ -..|.|.-++..+++.. | ....-...++.|..+|.+.|+.|...|+-++.++....
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 235677777777665 67789999999999853 4 22222247899999999999999999999999987654
Q ss_pred CCC-chhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHH-----HHHhhhhc-CCChHHHHHH-HHHHH
Q 002996 152 SRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV-----ERVTPRLQ-HANCAVVLSA-MILQQ 223 (860)
Q Consensus 152 ~~~-~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll-----~~v~~~l~-~~n~aVv~~a-~~~~~ 223 (860)
... -..+....+++|+..|..+++=.++-.||.+......++.....++ ..+..++. +....+.-|| .++..
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 321 1233345678888888888887888899999887666655554443 45556665 3444566666 23332
Q ss_pred hhhccChHHHHHHH-HHhhhHHHhhcC-CChhHHHHHHHHHHHHHhh
Q 002996 224 MELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQR 268 (860)
Q Consensus 224 l~~~~~~~~~~~~~-~~~~~~L~~lls-~~~niry~aL~~l~~l~~~ 268 (860)
+. ...++-++.++ ..+.+.|+.+|+ .+-.+|--|..+|..++..
T Consensus 349 It-AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 349 IT-AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred hh-cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 21 12333333332 256777888884 6788999999999887764
No 42
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=97.94 E-value=0.00017 Score=63.55 Aligned_cols=101 Identities=12% Similarity=0.233 Sum_probs=78.1
Q ss_pred CCCCChHHHHHHhccCCCCccceeecCCCccCCHHHHHHHH-HhcCceeeeeccCCCCceEEEEEEecCCcc-EEEEEEe
Q 002996 751 DGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLL-AASNMFFIAKRKNANQDVFYFSAKIPPGVP-FLIELTT 828 (860)
Q Consensus 751 ~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~~~~~~~~~~l-~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~-~Lv~l~~ 828 (860)
|-.|+-++|.++|.+.++ |...+++..++.+.+.+.+.| +++++-+|+.- |.+ ..++|...++-. ||+-.++
T Consensus 2 Pl~isTeeFG~~W~s~~~--e~k~~l~~~~~~t~~~~l~~l~~~l~lh~VevI---g~E-~I~A~~ll~~~~~~L~H~~~ 75 (104)
T PF14807_consen 2 PLQISTEEFGQLWLSFSN--ERKQNLPSSSQRTLPEFLQRLQQKLRLHVVEVI---GNE-GIFACQLLNSSPVCLLHCRV 75 (104)
T ss_pred CccccHHHHHHHHHcCCC--eEEEeccccCcCCHHHHHHHHHHhcCceEEEEe---Ccc-ceeeeeccCCCCeEEEEEEe
Confidence 567899999999999966 655666544455565555555 58999888852 223 467788887766 9999998
Q ss_pred ecCCCceEEEEecCCCchHHHHHHHHHHHHh
Q 002996 829 VIGNPGVKCAIKTPNPDIASLFFEAIETLLK 859 (860)
Q Consensus 829 ~~~~~~~~ltvrs~~~~v~~~l~~~i~~~l~ 859 (860)
.. +.+.+.+|++++.++..+....+.+|.
T Consensus 76 ~~--~~l~l~vrs~~~~l~d~ll~~~~~~~~ 104 (104)
T PF14807_consen 76 NA--GTLDLWVRSSDSPLTDCLLYQCQKILQ 104 (104)
T ss_pred cC--CeEEEEEEcCCCCcHHHHHHHHHHHhC
Confidence 65 489999999999999999999888763
No 43
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=5.3e-05 Score=65.67 Aligned_cols=84 Identities=30% Similarity=0.453 Sum_probs=67.0
Q ss_pred HHHHhhc-CCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 002996 49 NTFVKDS-QDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (860)
Q Consensus 49 n~l~kDl-~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~ 127 (860)
..|.+-| +++|+.+|..|+++|+.++.++..+. +.+++.|+++.||..|+.++.++- + ...++.|.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~----L~~~l~d~~~~vr~~a~~aL~~i~--~------~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIPA----LIELLKDEDPMVRRAAARALGRIG--D------PEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHH----HHHHHTSSSHHHHHHHHHHHHCCH--H------HHTHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHH----HHHHHcCCCHHHHHHHHHHHHHhC--C------HHHHHHHHH
Confidence 4567777 89999999999999999998866554 577779999999999999999873 2 236678888
Q ss_pred hhcC-CChhHHHHHHHHH
Q 002996 128 LISD-NNPMVVANAVAAL 144 (860)
Q Consensus 128 lL~D-~d~~V~~~al~~l 144 (860)
++.| .+..|..+|+.+|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 8865 5666677777665
No 44
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00068 Score=76.40 Aligned_cols=343 Identities=14% Similarity=0.077 Sum_probs=198.2
Q ss_pred CCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChh-----hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc
Q 002996 39 SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD-----KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA 113 (860)
Q Consensus 39 ~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~-----e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p 113 (860)
+++.-..+..+.=.+-.......+|-.++.++..++.. ..-+.+...+.....|.++.||+.|+.+++.+.. .-
T Consensus 151 ~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~ 229 (823)
T KOG2259|consen 151 EEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GF 229 (823)
T ss_pred chhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cc
Confidence 34444455555544444444556677777777777632 2336666667888889999999999999999876 22
Q ss_pred cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC------CchhccHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 002996 114 ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR------PIFEITSHTLSKLLTALNECTEWGQVFILDALSR 187 (860)
Q Consensus 114 ~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~------~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~ 187 (860)
.+-. .......+++.|.+..|..+|+.++.-.....|. ...++.-..+.++|..+.|.+=-..+..-+.|..
T Consensus 230 kL~~--~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 230 KLSK--ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGE 307 (823)
T ss_pred cccH--HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhch
Confidence 2211 2457778899999999999999888766654422 2345566778899988877532234444555544
Q ss_pred ccccCHHHHHHHHHHHhhhh---------cCCChHHHHHHHHH---HHh-hhccChHHH---HHHH-HHhhhHHHhhcCC
Q 002996 188 YKAADAREAENIVERVTPRL---------QHANCAVVLSAMIL---QQM-ELITSTDVV---RNLC-KKMAPPLVTLLSA 250 (860)
Q Consensus 188 ~~~~~~~~~~~ll~~v~~~l---------~~~n~aVv~~a~~~---~~l-~~~~~~~~~---~~~~-~~~~~~L~~lls~ 250 (860)
+..-..+- +.+.+.+.+ .|.-+.-.++.--+ .-. ..+.+.+.- .+++ .-+..+++.=|..
T Consensus 308 ~~~vSee~---i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlED 384 (823)
T KOG2259|consen 308 FEQVSEEI---IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLED 384 (823)
T ss_pred HHHhHHHH---HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechH
Confidence 43222211 111222211 12112111110000 000 000000000 0000 0011122222222
Q ss_pred -ChhHHHHHHHHHHHHHhhChhhhhccce-EEEeccCCcHHHHHHHHHHHHHhcCcccHH-HHHHHHHHhhhhccHHHHH
Q 002996 251 -EPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNID-QVLLEFKEYATEVDVDFVR 327 (860)
Q Consensus 251 -~~niry~aL~~l~~l~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~-~Iv~eL~~y~~~~d~~~~~ 327 (860)
-.++|-.|..++..++...|..-...+. ....++|+..-+|.+++..|..+++.--+. +.++.+++-+.+...++|.
T Consensus 385 Ef~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe 464 (823)
T KOG2259|consen 385 EFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVRE 464 (823)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHH
Confidence 3589999999999999999976544332 112244555889999999999987653332 4666666777777777766
Q ss_pred HHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002996 328 KAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCE 390 (860)
Q Consensus 328 ~~i~~I~~la~k~~~--~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~ 390 (860)
.+-.-++ +.+++. ..+.|++-+++.|..-. .=.+++|..+.+|-+|++.+...+..++.+
T Consensus 465 ~l~elL~--~~~~~d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~lv~s~m~rfl~ 526 (823)
T KOG2259|consen 465 ALRELLK--NARVSDLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRRLVLSNMGRFLE 526 (823)
T ss_pred HHHHHHH--hcCCCcHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 5544443 224432 34566666666665432 235788999999999988877666666664
No 45
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.87 E-value=0.0028 Score=70.89 Aligned_cols=433 Identities=18% Similarity=0.203 Sum_probs=220.3
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHHhhcc-ccccc-ccHHHH
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINA-ELVED-RGFLES 124 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~-~~~VRk~A~~~l~kl~~~~p-~~~~~-~~~~~~ 124 (860)
+.+++-|..+.+|++|--.=|+.+-+...==++.+.+.+..+..+. +.--|.+.+-|+.++..+.. ..+.. ..+.+.
T Consensus 283 vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c 362 (975)
T COG5181 283 VSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC 362 (975)
T ss_pred eeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH
Confidence 4578899999999999888777776544444466667777777774 88889999999988876533 22211 247788
Q ss_pred HHHhhcCCChhHH---HHHHHHHHHHhhcCCCCchhc----c--------HHHHHHHHHHhcc--------CChhHHHHH
Q 002996 125 LKDLISDNNPMVV---ANAVAALAEIEENSSRPIFEI----T--------SHTLSKLLTALNE--------CTEWGQVFI 181 (860)
Q Consensus 125 l~~lL~D~d~~V~---~~al~~l~~i~~~~~~~~~~~----~--------~~~~~~Ll~~l~~--------~~~w~q~~i 181 (860)
|.++|.|+..-|. +++++.+.+...--+...|+- + .+.+..+++...- ..-...-..
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~ 442 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREH 442 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHH
Confidence 8899999876554 455555544431111111110 0 0112233333210 111122233
Q ss_pred HHHHHhccccCHHHH-------------------HHHHHHHhhhhc------------CCChHHHHHHHHH-HH------
Q 002996 182 LDALSRYKAADAREA-------------------ENIVERVTPRLQ------------HANCAVVLSAMIL-QQ------ 223 (860)
Q Consensus 182 l~~L~~~~~~~~~~~-------------------~~ll~~v~~~l~------------~~n~aVv~~a~~~-~~------ 223 (860)
++++.+-....+++. ..+.+.+.+-+- .++.-|++.++++ ..
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v 522 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRV 522 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHH
Confidence 444333222222222 122222322221 1122244443222 11
Q ss_pred ----hhhccC-hHHHH----HHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhC--------h---hh-------hhc
Q 002996 224 ----MELITS-TDVVR----NLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR--------P---TI-------LAH 275 (860)
Q Consensus 224 ----l~~~~~-~~~~~----~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~--------p---~~-------~~~ 275 (860)
+++..+ ++..+ .+..++...|.++- ...-+-||. +.+..-.+.. | .+ .++
T Consensus 523 ~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~--d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 523 SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY--DSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH--HHHHHHHHhccccccEEEecccceeeehhhccCc
Confidence 122221 22222 22233333333321 112233432 2222222211 1 00 123
Q ss_pred cc-----eEEEeccCCcHHHHHHHHHHHHHhcC------cc-cHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh--hh
Q 002996 276 EI-----KVFFCKYNDPIYVKMEKLEIMIKLAS------DR-NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK--LE 341 (860)
Q Consensus 276 ~~-----~~~~~l~~d~~~Ik~~~L~lL~~l~~------~~-Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k--~~ 341 (860)
|+ .++..+.+.++.+|.+++++...++- +. -...+=.-|.+|+.+.+++.--.++.+|+.+..- +.
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 42 25666788999999999998876642 11 0111111234677777888777777777655432 21
Q ss_pred ---hhHHHHHHHHHHHHHhhh-------------------hhhHHHHHHHHH----HHHH-hCcccHH------------
Q 002996 342 ---RAAERCISVLLELIKIKV-------------------NYVVQEAIIVIK----DIFR-RYPNTYE------------ 382 (860)
Q Consensus 342 ---~~~~~~v~~ll~ll~~~~-------------------~~v~~e~i~~l~----~i~~-~~p~~~~------------ 382 (860)
+-....+..+..+|+.+. +|+...-|.+|+ +.+. -+-+.++
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 122344444444444433 344444454432 1111 1112221
Q ss_pred ----HHHHHHHHhhccCCchH---HHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCC
Q 002996 383 ----SIIATLCESLDTLDEPE---AKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEG 455 (860)
Q Consensus 383 ----~~i~~L~~~l~~~~~~~---~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~ 455 (860)
.++..|.+.|+. ++-+ +-..++-|+|||+- +-.++-.+...|..-...||.-+|.|+.-+|-.-.+.
T Consensus 761 iGPqdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cg----pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~- 834 (975)
T COG5181 761 IGPQDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCG----PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA- 834 (975)
T ss_pred cCHHHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcC----chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-
Confidence 233344444421 1211 23466889999986 4456777778888888899999999999888764431
Q ss_pred hHH---HHHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002996 456 PQQ---MIQVVLNNATVETDNPDLRDRAYIYWRLLST 489 (860)
Q Consensus 456 ~~~---~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~ 489 (860)
..+ .+.-+++-+.. +.|+-=||-|.-..+=|..
T Consensus 835 s~dYvy~itPlleDAlt-DrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 835 SLDYVYSITPLLEDALT-DRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHhhHHHHhhhc-ccchHHHHHHHHHHHHHhc
Confidence 222 23445666654 4788888888777766654
No 46
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=97.85 E-value=2e-05 Score=74.36 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=73.6
Q ss_pred ccccCCCCCCeE-EEEEEEeeCCeeEEEEEEEec-CCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeec
Q 002996 635 VVLPASTGQGLQ-IGAELTRQDGQVFYSMLFENN-TQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLF 712 (860)
Q Consensus 635 vl~~~~~~~gl~-I~~~~~~~~~~~~l~l~~~N~-s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~ 712 (860)
.|.++..+..+. |+|-|. .|+.+||.++|+ .++.|++++++++....++.+....++++|+||+...+++-+..+
T Consensus 29 ~LTE~EtEY~V~~vKHiF~---~hiVlQF~v~NTL~dq~LenV~V~~~~~~~~~~~~~~ipi~~L~~~~~~~~yV~l~~~ 105 (151)
T PF08752_consen 29 ELTESETEYVVSCVKHIFA---EHIVLQFNVTNTLNDQVLENVSVVLEPSEEEFEEVFIIPIPSLPYNEPGSCYVVLKRP 105 (151)
T ss_dssp E-S-TTSSEEEEEEEEE-S---SEEEEEEEEEE--TTEEEEEEEEEEEESSS--EEEEEE-EEEE-CT--EEEEEEEE-S
T ss_pred eccCcccEEEEEEEEEEec---ccEEEEEEEeeccCceeeeeEEEEEecCCceEEEEEEEEhhhCCCCCCeeEEEEEEeC
Confidence 455667778888 999994 799999999999 899999999999876655877777889999999999999999884
Q ss_pred CCCCC--CCCCcceEEEEec---CCC--CeEEEEecccccccc
Q 002996 713 QNMSA--GPPSSLLQVAVKN---NQQ--PVWYFNDKISLHVLF 748 (860)
Q Consensus 713 ~~~~~--~~~~~~l~~~~~~---~~~--~~~~~~l~~Pl~~~~ 748 (860)
.+... ..+.+.|+|.++. +.+ ..-.|.+++|+..+.
T Consensus 106 ~~~~~~~~~f~~~LkF~vke~Dp~tge~~~~GyeDEY~lEdle 148 (151)
T PF08752_consen 106 PPGSIPSGTFSNTLKFTVKEVDPSTGEPEDEGYEDEYQLEDLE 148 (151)
T ss_dssp SSTT---EEEEEEEEEEEEEB-TTT--B-S--EEEEEE---EE
T ss_pred CCCCceeeeEEeEEEEEEEeecCCCCCcCCCCccceEEeccEE
Confidence 33332 2456789999976 211 124788888877653
No 47
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.82 E-value=0.0095 Score=70.02 Aligned_cols=329 Identities=17% Similarity=0.231 Sum_probs=190.7
Q ss_pred hHHHhHhccCCCcc-----hHHHHHHHHHHhc----CCCCcHHHHHHHHHHhhcC--CCCHHHHhHHHHHhcCCCh---h
Q 002996 11 FTDVVNCMQTENLE-----LKKLVYLYLINYA----KSQPDLAILAVNTFVKDSQ--DPNPLIRALAVRTMGCIRV---D 76 (860)
Q Consensus 11 f~~vi~l~~s~~~~-----~Krl~Yl~l~~~~----~~~~el~~L~in~l~kDl~--~~n~~ir~lALr~l~~i~~---~ 76 (860)
|...+.++..+.++ +-|=+|..+-.++ ..-|+..--.+-.+.+|+. ..|.-+|-+|+-++|-++- .
T Consensus 773 y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~ 852 (1233)
T KOG1824|consen 773 YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL 852 (1233)
T ss_pred HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC
Confidence 44444455544333 3344454443322 1223334445567788887 4578999999999999872 2
Q ss_pred hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCch
Q 002996 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (860)
Q Consensus 77 e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~ 156 (860)
.-.+.+...+.+++.+++.-||++|+.|+..+---+ .+ .|++.+.+... .+|-=..-.+..|.|+......
T Consensus 853 s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn---l~--~yLpfil~qi~-sqpk~QyLLLhSlkevi~~~sv--- 923 (1233)
T KOG1824|consen 853 SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN---LP--KYLPFILEQIE-SQPKRQYLLLHSLKEVIVSASV--- 923 (1233)
T ss_pred CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc---hH--hHHHHHHHHHh-cchHhHHHHHHHHHHHHHHhcc---
Confidence 223566667899999999999999999999876411 11 36666655553 3344444445556565433211
Q ss_pred hccHHHHHHHHHHhc---cC-ChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChH---HHHHHHHHHHhhhcc-
Q 002996 157 EITSHTLSKLLTALN---EC-TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCA---VVLSAMILQQMELIT- 228 (860)
Q Consensus 157 ~~~~~~~~~Ll~~l~---~~-~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~a---Vv~~a~~~~~l~~~~- 228 (860)
+...+.+.++...|- ++ .+...-.+-++|.++.--+++ .++-.+...+.+..+. .+..| +++..
T Consensus 924 d~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe---sLlpkL~~~~~S~a~~~rs~vvsa-----vKfsis 995 (1233)
T KOG1824|consen 924 DGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE---SLLPKLKLLLRSEASNTRSSVVSA-----VKFSIS 995 (1233)
T ss_pred chhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH---HHHHHHHHHhcCCCcchhhhhhhe-----eeeeec
Confidence 122233444444332 23 345566677888887766654 4555555555554442 23333 22221
Q ss_pred -ChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhc-----------------------cceEEEec
Q 002996 229 -STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAH-----------------------EIKVFFCK 283 (860)
Q Consensus 229 -~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~-----------------------~~~~~~~l 283 (860)
.+..++.+.++.......++ +.|.++|-++|..++..+...|.++.. ++--|.--
T Consensus 996 d~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~ 1075 (1233)
T KOG1824|consen 996 DQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHT 1075 (1233)
T ss_pred CCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCcccc
Confidence 34445555555444445555 578999999999999888776654321 11245445
Q ss_pred cCCcHHHHHHHHHHHHHhcCc----ccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 002996 284 YNDPIYVKMEKLEIMIKLASD----RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI 357 (860)
Q Consensus 284 ~~d~~~Ik~~~L~lL~~l~~~----~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~ 357 (860)
-||-..+|+.|.|.+|.|.+. -++.+.++.+..=+.+ ..+++--...-+.++|...|.....-+|.+++=|+.
T Consensus 1076 VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~D-hydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~ 1152 (1233)
T KOG1824|consen 1076 VDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLED-HYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRK 1152 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 577799999999999998653 2322222222111111 134444444556677777777766777777766654
No 48
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.68 E-value=0.014 Score=69.40 Aligned_cols=316 Identities=19% Similarity=0.262 Sum_probs=166.1
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCCh-----hhhH-HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---cccc
Q 002996 49 NTFVKDSQDPNPLIRALAVRTMGCIRV-----DKIT-EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDR 119 (860)
Q Consensus 49 n~l~kDl~~~n~~ir~lALr~l~~i~~-----~e~~-~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~~~~ 119 (860)
..|.+=|.+.|+.+..+|+++|.++.. .+|. ..+++.+.+++.+.+.-+++.|+..++.+- .+++. +...
T Consensus 293 ~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~ 371 (708)
T PF05804_consen 293 SLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSL 371 (708)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHC
Confidence 345666778899999999999998762 3343 467888999999999989888888777654 33332 2235
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-CchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH
Q 002996 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN 198 (860)
Q Consensus 120 ~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ 198 (860)
++++.|..+|.|.+.. ..++.+|+.++..+.. ..|.-. ..+.. ++++|.... .+.-+ ..
T Consensus 372 GlIPkLv~LL~d~~~~--~val~iLy~LS~dd~~r~~f~~T-dcIp~---------------L~~~Ll~~~-~~~v~-~e 431 (708)
T PF05804_consen 372 GLIPKLVELLKDPNFR--EVALKILYNLSMDDEARSMFAYT-DCIPQ---------------LMQMLLENS-EEEVQ-LE 431 (708)
T ss_pred CCcHHHHHHhCCCchH--HHHHHHHHHhccCHhhHHHHhhc-chHHH---------------HHHHHHhCC-Ccccc-HH
Confidence 8899999999876533 4467788888765321 111100 11222 223322221 10000 01
Q ss_pred HHHHHhhhh-cCCChHHHHHHHHHHHhhhccChHHHHHHHHHh----hhHH---HhhcC-CChhHHHHHHHHHHHHHhhC
Q 002996 199 IVERVTPRL-QHANCAVVLSAMILQQMELITSTDVVRNLCKKM----APPL---VTLLS-AEPEIQYVALRNINLIVQRR 269 (860)
Q Consensus 199 ll~~v~~~l-~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~----~~~L---~~lls-~~~niry~aL~~l~~l~~~~ 269 (860)
++-.+..+- ...|+-.+.+. ..++.+++++ -+.| ++-++ .++..+-.....+..|+.
T Consensus 432 liaL~iNLa~~~rnaqlm~~g------------~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~-- 497 (708)
T PF05804_consen 432 LIALLINLALNKRNAQLMCEG------------NGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAK-- 497 (708)
T ss_pred HHHHHHHHhcCHHHHHHHHhc------------CcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--
Confidence 111111110 01111111110 0001111000 0001 11112 121233222232222221
Q ss_pred hhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCc-ccHHHHHHH--HHHhhh------hccHHHHHHHHHHHHHHHHhh
Q 002996 270 PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASD-RNIDQVLLE--FKEYAT------EVDVDFVRKAVRAIGRCAIKL 340 (860)
Q Consensus 270 p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~-~Nv~~Iv~e--L~~y~~------~~d~~~~~~~i~~I~~la~k~ 340 (860)
. +...++.......|-+|..|..+ .++..++++ |..|+. .+++++.-++|.-+|.+|. .
T Consensus 498 ---------~--v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d 565 (708)
T PF05804_consen 498 ---------I--VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-D 565 (708)
T ss_pred ---------H--hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-C
Confidence 1 23345677888888888888744 378888875 456654 2567888899999998774 2
Q ss_pred hhhHH-----HHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhCcccHHHH------HHHHHHhhccCCchHHHH---HH
Q 002996 341 ERAAE-----RCISVLLELIKIKV--NYVVQEAIIVIKDIFRRYPNTYESI------IATLCESLDTLDEPEAKA---SM 404 (860)
Q Consensus 341 ~~~~~-----~~v~~ll~ll~~~~--~~v~~e~i~~l~~i~~~~p~~~~~~------i~~L~~~l~~~~~~~~~~---~~ 404 (860)
+..+. .+++.++++|.... +.++-.++.++-+++.. ++.++.+ +..|++.+.+ +.++.++ .+
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d-~N~~ir~~~d~~ 643 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHD-KNAEIRKVCDNA 643 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcC-CCHHHHHHHHHH
Confidence 22222 45888999998765 34444455566666654 4444433 3344444443 2344443 34
Q ss_pred HHHHhhccc
Q 002996 405 IWIIGEYAE 413 (860)
Q Consensus 405 ~wilGEy~~ 413 (860)
.-|++||-.
T Consensus 644 Ldii~e~d~ 652 (708)
T PF05804_consen 644 LDIIAEYDE 652 (708)
T ss_pred HHHHHHhCH
Confidence 667777654
No 49
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.62 E-value=0.00075 Score=67.15 Aligned_cols=89 Identities=13% Similarity=0.223 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHHHHhhChhhhhccce-EEEeccCCcHHHHHHHHHHHHHhcCcccHH---HHHHHHHHhhhhccHHHH
Q 002996 251 EPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNID---QVLLEFKEYATEVDVDFV 326 (860)
Q Consensus 251 ~~niry~aL~~l~~l~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~---~Iv~eL~~y~~~~d~~~~ 326 (860)
+|.+|--++-++.-++.++|+++.++.. ++.|+.|+++.||+.++-+|..|..++-++ .++.++..-+.+.|++++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 5788999999999999999999999987 567888889999999999999998775433 355777777788999999
Q ss_pred HHHHHHHHHHHHh
Q 002996 327 RKAVRAIGRCAIK 339 (860)
Q Consensus 327 ~~~i~~I~~la~k 339 (860)
..+...+..+..+
T Consensus 81 ~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 81 SLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHh
Confidence 9998888888887
No 50
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.58 E-value=0.15 Score=58.86 Aligned_cols=446 Identities=14% Similarity=0.134 Sum_probs=214.0
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCCCC---c-HHHHHHHHHHhhcCCCCHHHHhHHH-------------HHhcCCChhh
Q 002996 15 VNCMQTENLELKKLVYLYLINYAKSQP---D-LAILAVNTFVKDSQDPNPLIRALAV-------------RTMGCIRVDK 77 (860)
Q Consensus 15 i~l~~s~~~~~Krl~Yl~l~~~~~~~~---e-l~~L~in~l~kDl~~~n~~ir~lAL-------------r~l~~i~~~e 77 (860)
++-.+|+|-+.||++...+..+..... + +-.-+...|-+ ++..|-+|+ .--.+++..+
T Consensus 642 ~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~-----~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~ 716 (1172)
T KOG0213|consen 642 IREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFF-----SFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP 716 (1172)
T ss_pred HHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHh-----hhhhhhhhccccchhhHHHHHHHHHHHhCchH
Confidence 345789999999999999988765441 1 11111222222 222333333 3334566666
Q ss_pred hHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc----ccHHHHHHHhhc--CCChhHHHHHHHHHHHHhhcC
Q 002996 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED----RGFLESLKDLIS--DNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~----~~~~~~l~~lL~--D~d~~V~~~al~~l~~i~~~~ 151 (860)
++.-+ ..-+.|.++--||-++.++-|++..-+-.=-+ ..+++-+.-.+. +..-+|+...+.++..-.-..
T Consensus 717 ~v~R~----v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r 792 (1172)
T KOG0213|consen 717 IVSRV----VLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR 792 (1172)
T ss_pred HHHHH----hhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc
Confidence 65554 33445666666999999999999754422111 134444444443 345567777776654322221
Q ss_pred CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhcccc-----CHHHHHHHHHHHhhhhcCCChHH---HHHHHHHHH
Q 002996 152 SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA-----DAREAENIVERVTPRLQHANCAV---VLSAMILQQ 223 (860)
Q Consensus 152 ~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~-----~~~~~~~ll~~v~~~l~~~n~aV---v~~a~~~~~ 223 (860)
. ...+++++..++..|+..++-......++.++..+- +.+....+=..+...|..-.+-| ++.| +++
T Consensus 793 ~---kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgA--ika 867 (1172)
T KOG0213|consen 793 V---KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGA--IKA 867 (1172)
T ss_pred c---ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHH--HHH
Confidence 2 233456677777778777776666666655554321 11111111112233343333432 2233 111
Q ss_pred hhhcc----ChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhc--cceE----EEeccCCcHHHHH
Q 002996 224 MELIT----STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAH--EIKV----FFCKYNDPIYVKM 292 (860)
Q Consensus 224 l~~~~----~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~--~~~~----~~~l~~d~~~Ik~ 292 (860)
+-++. -...++. +.|.|.-+| +++.-++--.++.+..|+.+.|+.+.. ++++ +..+..-...|||
T Consensus 868 I~nvigm~km~pPi~d----llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRR 943 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKD----LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRR 943 (1172)
T ss_pred HHHhccccccCCChhh----hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 0111222 233344444 455567777777777777777764321 2221 1122233344555
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 002996 293 EKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKD 372 (860)
Q Consensus 293 ~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~ 372 (860)
.+.+.+--++..=-=++|+.-|+.-+..-+-+-+.-...+|+..|+...+. ..+.+|+.=-+...-.|.+-++..++-
T Consensus 944 aa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF--tVLPalmneYrtPe~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 944 AAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF--TVLPALMNEYRTPEANVQNGVLKALSF 1021 (1172)
T ss_pred HHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch--hhhHHHHhhccCchhHHHHhHHHHHHH
Confidence 554444444333333344444444443333333333333444444332221 122222222222222233333333333
Q ss_pred HHHhCcccHHHHHHHHHHhhcc-CC--chHHHHHH----H-HHHhhcccccCC-HHHHHHHHHhhCCCCcHHHHHHHHHH
Q 002996 373 IFRRYPNTYESIIATLCESLDT-LD--EPEAKASM----I-WIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTA 443 (860)
Q Consensus 373 i~~~~p~~~~~~i~~L~~~l~~-~~--~~~~~~~~----~-wilGEy~~~i~~-~~~~l~~~~~~~~~e~~~v~~~iLta 443 (860)
+++.-.+.-..-+-.++-.|+| +. ++.-++.+ - -.||=||.-..+ ...+|+.+..+..+.++.|+...+.+
T Consensus 1022 ~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~ 1101 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEA 1101 (1172)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHH
Confidence 3332112111111111111211 11 11112222 1 346766655443 34566666678888999999999888
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002996 444 TVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 488 (860)
Q Consensus 444 ~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~ 488 (860)
+=-+..... ...+++++++-. . +..--||+| ||+.++
T Consensus 1102 ~eg~r~~Lg---~~~~~~Y~~QGL-F-HParkVR~~---yw~vyn 1138 (1172)
T KOG0213|consen 1102 MEGLRVALG---PQAMLKYCLQGL-F-HPARKVRKR---YWTVYN 1138 (1172)
T ss_pred HHHHHHHhc---hHHHHHHHHHhc-c-CcHHHHHHH---HHHHHH
Confidence 877766543 367788888753 2 466789887 666665
No 51
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.13 Score=57.65 Aligned_cols=404 Identities=15% Similarity=0.171 Sum_probs=220.5
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH-hhcccccc-ccc
Q 002996 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLY-DINAELVE-DRG 120 (860)
Q Consensus 43 l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~-~~~p~~~~-~~~ 120 (860)
.+.+-+--+.||+...|.+-+-- ++++.+ ..+...+.+..-||-+.++++-+- -..++... -++
T Consensus 19 aaalelEk~Vk~l~~~~~~~~i~-----------k~I~~L---~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 19 AAALELEKLVKDLVNNNDYDQIR-----------KVISEL---AGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred HHHHHHHHHHHHHHccCcHHHHH-----------HHHHHH---HHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 35555666666776666543321 222222 344445667777888888877653 23333311 124
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChh---HHHHHHHHHHhccccCHH--H
Q 002996 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW---GQVFILDALSRYKAADAR--E 195 (860)
Q Consensus 121 ~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w---~q~~il~~L~~~~~~~~~--~ 195 (860)
.++.+...++|.|..|..-|+-.++.|++--.+..+......+.-|++...+.+.- +--.+-|+++....+... .
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFS 164 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccC
Confidence 66777889999999999999999999988655555555555666666665554332 112223333333222211 2
Q ss_pred HHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHh---hCh
Q 002996 196 AENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQ---RRP 270 (860)
Q Consensus 196 ~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~---~~p 270 (860)
...++..+..++.-.|+.+..-. --+..++.+...+... ....+.+-|..+|+ +..++|-+.=..|..+.+ ..|
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~-yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMIS-YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHh-cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 34566667777777788655433 1223344444444433 22334556677775 577888666554444433 344
Q ss_pred hhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh----hHHH
Q 002996 271 TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAER 346 (860)
Q Consensus 271 ~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~----~~~~ 346 (860)
..+ +.+++++-|...+.+.+++++..++.-|-.+..-+++ ....
T Consensus 244 ~s~--------------------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~ 291 (675)
T KOG0212|consen 244 SSM--------------------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSG 291 (675)
T ss_pred ccc--------------------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 433 2222233333334444444444444433333322222 2223
Q ss_pred HHHHHHHHHHhhhhhhHHHHHH----HHHHHHHhCcc----cHHHHHHHHHHhhccCCchHHH-HHHHHHHhhcccc---
Q 002996 347 CISVLLELIKIKVNYVVQEAII----VIKDIFRRYPN----TYESIIATLCESLDTLDEPEAK-ASMIWIIGEYAER--- 414 (860)
Q Consensus 347 ~v~~ll~ll~~~~~~v~~e~i~----~l~~i~~~~p~----~~~~~i~~L~~~l~~~~~~~~~-~~~~wilGEy~~~--- 414 (860)
++..++.++......-..++.. .+..++...-. -+..+++.|-+++.+ +.-+++ ++.=||+-=|...
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~q 370 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQ 370 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcch
Confidence 3444444444433321111111 12222221111 123566666666643 223344 5566998766432
Q ss_pred -cCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcC--CH
Q 002996 415 -IDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST--DP 491 (860)
Q Consensus 415 -i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~--~~ 491 (860)
+.....++..+++...+.+.+|-...|..++-++.....-+..+.+..+|++..+ +..-++.|+.+..|=|.. ++
T Consensus 371 l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e--~~~~l~~Rg~lIIRqlC~lL~a 448 (675)
T KOG0212|consen 371 LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKE--DTKLLEVRGNLIIRQLCLLLNA 448 (675)
T ss_pred hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhh--hhHHHHhhhhHHHHHHHHHhCH
Confidence 2235678889999999999999999999998887754332356778888887543 456788999888875542 56
Q ss_pred HHHHH
Q 002996 492 EAAKD 496 (860)
Q Consensus 492 ~~~~~ 496 (860)
+..-+
T Consensus 449 E~IYr 453 (675)
T KOG0212|consen 449 ERIYR 453 (675)
T ss_pred HHHHH
Confidence 54443
No 52
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.50 E-value=0.071 Score=61.33 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=96.4
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHH
Q 002996 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQ 87 (860)
Q Consensus 10 ~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~v~ 87 (860)
.|-.++..... +...|+|+--++..|++.-|++.--++|++..=+.|.+..||--|+|.|..++ +++.+.-+.+-+.
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 45566666664 68899999999999999999999999999999999999999999999999998 5789999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh--cCCChhHHHHHHHHHHHH
Q 002996 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEI 147 (860)
Q Consensus 88 ~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL--~D~d~~V~~~al~~l~~i 147 (860)
++|...++-.+..+=-++..+++.+|... +...+..++ ...|..|.--++..|.+-
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 99999888888777777888888888543 222333333 134556777777766553
No 53
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.1 Score=64.77 Aligned_cols=374 Identities=13% Similarity=0.111 Sum_probs=203.1
Q ss_pred HHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCch
Q 002996 80 EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (860)
Q Consensus 80 ~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~ 156 (860)
++++---.++..| ....=||=||+++..+.....+.++. ..++|+|++-=-|+|+.|..+-......+..+. +...
T Consensus 955 PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~-k~~v 1033 (1702)
T KOG0915|consen 955 PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS-KKVV 1033 (1702)
T ss_pred hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh-HHHH
Confidence 4555556677777 56677999999999999877665543 135666666666999999887776666655442 2111
Q ss_pred h-ccHHHHHHHHHHhccCChhH-----HHHHHHHHHhccccCHHHHHHHH---HHHhhhhcCCChHHHHHH-HHHHHh--
Q 002996 157 E-ITSHTLSKLLTALNECTEWG-----QVFILDALSRYKAADAREAENIV---ERVTPRLQHANCAVVLSA-MILQQM-- 224 (860)
Q Consensus 157 ~-~~~~~~~~Ll~~l~~~~~w~-----q~~il~~L~~~~~~~~~~~~~ll---~~v~~~l~~~n~aVv~~a-~~~~~l-- 224 (860)
+ ....++..|+..+ .+.+|- ...+.++|+. +..++..+++. +.+.......-.+|.-+| .....+
T Consensus 1034 d~y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g--~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNL-TSKEWRVREASCLALADLLQG--RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred HHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112233333332 357884 3344555543 22222222222 222222212122332222 111111
Q ss_pred -----hhccChHHHHHHHHHhhhHHHh--hcCCChhHHHHHHHHHHHHHhhChhhhhccceEE-EeccCCcHHHHHHHHH
Q 002996 225 -----ELITSTDVVRNLCKKMAPPLVT--LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKYNDPIYVKMEKLE 296 (860)
Q Consensus 225 -----~~~~~~~~~~~~~~~~~~~L~~--lls~~~niry~aL~~l~~l~~~~p~~~~~~~~~~-~~l~~d~~~Ik~~~L~ 296 (860)
....+....++.+..+.|.|.. .+|+-+++|-+++.++..|+...+..+.+|...+ .|+
T Consensus 1111 l~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~l------------- 1177 (1702)
T KOG0915|consen 1111 LCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLL------------- 1177 (1702)
T ss_pred HHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHH-------------
Confidence 1112223334455555665553 4577789999999999999999999888875321 111
Q ss_pred HHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 002996 297 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 376 (860)
Q Consensus 297 lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~ 376 (860)
.... ..+ =+.-+.|+.-.-.+...+++.....=+.|-. -.++++-+++..-+..+-.|.+-++.+++|.
T Consensus 1178 --l~~~-s~l----E~~vLnYls~r~~~~e~ealDt~R~s~akss----pmmeTi~~ci~~iD~~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1178 --LNAY-SEL----EPQVLNYLSLRLINIETEALDTLRASAAKSS----PMMETINKCINYIDISVLEELIPRLTELVRG 1246 (1702)
T ss_pred --HHHc-ccc----chHHHHHHHHhhhhhHHHHHHHHHHhhhcCC----cHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 1111 111 1222334332223444455544443333322 3455666666655555666666666666665
Q ss_pred CcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhccccc-CCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCC
Q 002996 377 YPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEG 455 (860)
Q Consensus 377 ~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i-~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~ 455 (860)
.=.+- +...+...++-+.-.||..+ +-...+++.++..+.+-++.+|-+.-.|..+++.-..+.+
T Consensus 1247 sVgl~--------------Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq 1312 (1702)
T KOG0915|consen 1247 SVGLG--------------TKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQ 1312 (1702)
T ss_pred cCCCC--------------cchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHH
Confidence 32211 01111122333334455443 3467899999999999999999999999999987654434
Q ss_pred hHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHH
Q 002996 456 PQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKD 496 (860)
Q Consensus 456 ~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~~~~~~ 496 (860)
++.++..++.....+..++- +-++.-...+.++..+.++.
T Consensus 1313 ~qKLie~~l~~~l~k~es~~-siscatis~Ian~s~e~Lkn 1352 (1702)
T KOG0915|consen 1313 MQKLIETLLADLLGKDESLK-SISCATISNIANYSQEMLKN 1352 (1702)
T ss_pred HHHHHHHHHHHHhccCCCcc-chhHHHHHHHHHhhHHHHHh
Confidence 88888888877554322222 44444444455554444433
No 54
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0035 Score=66.06 Aligned_cols=321 Identities=17% Similarity=0.173 Sum_probs=185.3
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCCCcH----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----hHH-HHH
Q 002996 14 VVNCMQTENLELKKLVYLYLINYAKSQPDL----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----ITE-YLC 83 (860)
Q Consensus 14 vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el----~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e-----~~~-~l~ 83 (860)
|.-++++.+....+-+--++.+++-....- .++-...+...+..++-.+|+.|..++.++.+-+ ++. --.
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 334667777777777777777666443321 1112223556667778889999999998876432 221 113
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhh---cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC--CCchhc
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS--RPIFEI 158 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~---~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~--~~~~~~ 158 (860)
.++.++.++++--||+.|.-+++.|-.. -..++ ..+-++.|..++...|+.|..-+..++.-|.-... +...+.
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV-~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqa 248 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV-HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQA 248 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh-ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence 4566688889999999999888877543 22333 35778999999999999999999999988864421 111222
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHH-----HHHhhhhcCCChHHHHHHHHHHHhhhcc-ChHH
Q 002996 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV-----ERVTPRLQHANCAVVLSAMILQQMELIT-STDV 232 (860)
Q Consensus 159 ~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll-----~~v~~~l~~~n~aVv~~a~~~~~l~~~~-~~~~ 232 (860)
-++.++.|+....+.++-.++..=-.|..+..+. +....+. ..+..+||+..--.+++.+ .|+..+. +| .
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasV--aCIrnisihp-l 324 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASV--ACIRNISIHP-L 324 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHH--HHHhhccccc-C
Confidence 3456788888888888877776554554443322 1111222 2334556553322333331 2333332 11 0
Q ss_pred HHHHH--HHhhhHHHhhcC-CCh-hHHHHHHHHHHHHHhhCh---hhhh-c-cceEEEe-ccCCcHHHHHHHHHHHHHhc
Q 002996 233 VRNLC--KKMAPPLVTLLS-AEP-EIQYVALRNINLIVQRRP---TILA-H-EIKVFFC-KYNDPIYVKMEKLEIMIKLA 302 (860)
Q Consensus 233 ~~~~~--~~~~~~L~~lls-~~~-niry~aL~~l~~l~~~~p---~~~~-~-~~~~~~~-l~~d~~~Ik~~~L~lL~~l~ 302 (860)
-..++ .-...||+++|+ ++. ++|.-|..+|..++..+. ..+. . -+..+.| +.|-|.+++.+---.+..|+
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 01111 113457999995 555 499999999999886432 2221 1 1222222 33555666665555555555
Q ss_pred CcccHHH------HHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 002996 303 SDRNIDQ------VLLEFKEYATEVDVDFVRKAVRAIGRCAIK 339 (860)
Q Consensus 303 ~~~Nv~~------Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k 339 (860)
=.+|-+. |++-|+.+..+.+.+++..+..+++.++..
T Consensus 405 l~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 405 LNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred hccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 4444443 233344444455566666666666665554
No 55
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.00073 Score=80.98 Aligned_cols=179 Identities=21% Similarity=0.248 Sum_probs=129.0
Q ss_pred cchHHHhHhc----cCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhhHHH
Q 002996 9 SLFTDVVNCM----QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKITEY 81 (860)
Q Consensus 9 ~~f~~vi~l~----~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~-~~n~~ir~lALr~l~~i~--~~e~~~~ 81 (860)
.+-|-|++.+ -.+|.++..-+||++..+.--..+..--.-..|-.=++ +|+|.||+.+.-++|.+. -|.+++.
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~ 998 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP 998 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccch
Confidence 4455566666 44678899999999988766555433333334444453 899999999999999865 6889999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHH
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~ 161 (860)
-.+.+.+-|.|.++-|||+|++.+.++...+ .++-.+.+..+-.+|.|.|+.+..-|=..+.|+..+. ..++.+++.
T Consensus 999 ~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPd 1075 (1251)
T KOG0414|consen 999 WTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPD 1075 (1251)
T ss_pred hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchH
Confidence 9999999999999999999999999988654 4444478888889999999998887778888988764 456777666
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhccccC
Q 002996 162 TLSKLLTALNECTEWGQVFILDALSRYKAAD 192 (860)
Q Consensus 162 ~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~ 192 (860)
++.+|-+. ..++-.-..+++.|-.|...|
T Consensus 1076 il~~Ls~~--~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1076 ILSRLSNG--NLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred HHHhhccC--cccchhhHHHHHHHHHHhccc
Confidence 66666443 222323344455544444433
No 56
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.42 E-value=0.2 Score=56.76 Aligned_cols=177 Identities=13% Similarity=0.058 Sum_probs=86.2
Q ss_pred CCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHH---------HHHHHHHhhcCCC--CHHHHhHHHHHhcC
Q 002996 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAI---------LAVNTFVKDSQDP--NPLIRALAVRTMGC 72 (860)
Q Consensus 4 G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~---------L~in~l~kDl~~~--n~~ir~lALr~l~~ 72 (860)
|||.....--+...+.|+|-+.||..-+....+.+-..+-.- +.-...++-..+. .-...-++--.++.
T Consensus 436 ~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk 515 (975)
T COG5181 436 CHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAK 515 (975)
T ss_pred hhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHH
Confidence 444444433444689999999999999999998876644110 0000011111110 00111122223333
Q ss_pred CChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccccc----HHHHHHHhhcC--CChhHHHHHHHHHHH
Q 002996 73 IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG----FLESLKDLISD--NNPMVVANAVAALAE 146 (860)
Q Consensus 73 i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~----~~~~l~~lL~D--~d~~V~~~al~~l~~ 146 (860)
.+. .+.+..-|..-+.|...--||-++.++-|++..-|-.--++. +.+.+...+.+ ...+++.-++.+..-
T Consensus 516 ~~g---~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~v 592 (975)
T COG5181 516 MGG---DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLV 592 (975)
T ss_pred HcC---ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceee
Confidence 221 145556667777885544599999999999976553321111 22222223322 222333322221111
Q ss_pred HhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHH
Q 002996 147 IEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALS 186 (860)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~ 186 (860)
-..-.+ ...+..++..+++.|+...|-..+...++..
T Consensus 593 sl~~r~---kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 593 SLEFRG---KPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred ehhhcc---CcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 001111 1234456667777777666665555444443
No 57
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.5 Score=55.11 Aligned_cols=423 Identities=16% Similarity=0.216 Sum_probs=220.6
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh
Q 002996 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (860)
Q Consensus 10 ~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~ 89 (860)
+|.--+..|.|++-+.+-.+--|++...++.-|+++-.--...+++. | .-...|..++ +.+.|-+.++
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~-p--~~~~fa~~a~---------~~v~P~Ll~~ 327 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP-P--SSKYFARQAL---------QDVVPVLLEL 327 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-c--hhhHHHHHHH---------hHhhHHHHHH
Confidence 34444455556666666666666666665555555544444445444 2 1111222221 2444455555
Q ss_pred hc-------CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-CchhccHH
Q 002996 90 LK-------DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSH 161 (860)
Q Consensus 90 l~-------d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~-~~~~~~~~ 161 (860)
|. +.++.+-|.|-.|+.-+-+...|.+-+ ...+.+++-+...|-.=.-+|+.++-.|...... ....+.+.
T Consensus 328 L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 328 LTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred HHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 53 255678888888877666655544432 4677788777777766666777777777654322 23445555
Q ss_pred HHHHHHHHhcc-------CChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhh-----hcc
Q 002996 162 TLSKLLTALNE-------CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA-MILQQME-----LIT 228 (860)
Q Consensus 162 ~~~~Ll~~l~~-------~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~-----~~~ 228 (860)
.++-+++.+.| ..+|.--+|.+.+...+- +......++..+..-|+ ..|-|.-++ ..+..+- ...
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~-n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII-NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc-cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhcc
Confidence 66666666554 357877788887763221 11222333444444442 223232333 1222111 000
Q ss_pred Ch---HHHHHHHHHhhhHHHhhc---C-CChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHh
Q 002996 229 ST---DVVRNLCKKMAPPLVTLL---S-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKL 301 (860)
Q Consensus 229 ~~---~~~~~~~~~~~~~L~~ll---s-~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l 301 (860)
+. +.......-++..|+.-- + .+.|+|-.+.++|..|+...|+.+.+ .+....+-++.+|
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~-------------~v~~~~l~il~kl 551 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP-------------MVQKLTLVILEKL 551 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH-------------HHHHHHHHHHHHH
Confidence 11 011112233344444332 2 46799999999999999877754322 1222222222222
Q ss_pred cCcccHHHHHH-HHHHhhhhc-cHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Q 002996 302 ASDRNIDQVLL-EFKEYATEV-DVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVN-YVVQEAIIVIKDIF 374 (860)
Q Consensus 302 ~~~~Nv~~Iv~-eL~~y~~~~-d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~ll~~~~~-~v~~e~i~~l~~i~ 374 (860)
++.+. +.+.|.... -.++...+...++.+..|++ +..+..+..+++++..+.+ .+-+|+.-.+..++
T Consensus 552 ------~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 552 ------DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLA 625 (859)
T ss_pred ------HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 11111 222222111 12344445555555555554 4556666666677776433 45556655444444
Q ss_pred HhCcccHH----HHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC-----HHHHHHHHHhhCCCC--cHHHHHHHHHH
Q 002996 375 RRYPNTYE----SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLESFPEE--PAQVQLQLLTA 443 (860)
Q Consensus 375 ~~~p~~~~----~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~-----~~~~l~~~~~~~~~e--~~~v~~~iLta 443 (860)
..-...+. ...+.|..-|...++..+-.+++=++|.-+.-..+ +.+++..+++....+ +-.||-+||++
T Consensus 626 ~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~ 705 (859)
T KOG1241|consen 626 ESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSV 705 (859)
T ss_pred HHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHH
Confidence 32222222 22333444444555666667778888887654432 567778888776654 46889999999
Q ss_pred HHHHhhcCCCCChH---HHHHHHHHhc
Q 002996 444 TVKLFLKKPTEGPQ---QMIQVVLNNA 467 (860)
Q Consensus 444 ~~Kl~~~~p~~~~~---~~i~~~l~~~ 467 (860)
+.-++..-... .+ +++..+|+.+
T Consensus 706 FgDIAlaIg~~-F~~Yl~~vm~llq~a 731 (859)
T KOG1241|consen 706 FGDIALAIGAD-FEPYLEMVMPLLQQA 731 (859)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 99888754322 33 3444455544
No 58
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.026 Score=65.68 Aligned_cols=162 Identities=17% Similarity=0.192 Sum_probs=108.1
Q ss_pred HHHHhhcCCCCHHHHhHH-HHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 002996 49 NTFVKDSQDPNPLIRALA-VRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (860)
Q Consensus 49 n~l~kDl~~~n~~ir~lA-Lr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~ 127 (860)
..+++++.+.-+.-|..| -+.++.+....=+-.+.++|.++....+--++|-..+-+...-...|+.... .++.+.+
T Consensus 16 ~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~--avnt~~k 93 (734)
T KOG1061|consen 16 PELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAIL--AVNTFLK 93 (734)
T ss_pred hHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHh--hhhhhhc
Confidence 345556655444445444 4567777644445678899999999888777777777666666677876542 4444444
Q ss_pred hhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHH--HHHHHHHHHhh
Q 002996 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR--EAENIVERVTP 205 (860)
Q Consensus 128 lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~--~~~~ll~~v~~ 205 (860)
=..|.||.+.+-|+..+..+.-. .+......-|.+.+++-+|..+...--..+++...+++ +...+++.+..
T Consensus 94 D~~d~np~iR~lAlrtm~~l~v~------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ 167 (734)
T KOG1061|consen 94 DCEDPNPLIRALALRTMGCLRVD------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKD 167 (734)
T ss_pred cCCCCCHHHHHHHhhceeeEeeh------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHH
Confidence 44578999998887776655321 23334566677778888898887776666666544433 23457777778
Q ss_pred hhcCCChHHHHHH
Q 002996 206 RLQHANCAVVLSA 218 (860)
Q Consensus 206 ~l~~~n~aVv~~a 218 (860)
.+...||.|+-+|
T Consensus 168 ll~D~~p~VVAnA 180 (734)
T KOG1061|consen 168 LLSDSNPMVVANA 180 (734)
T ss_pred HhcCCCchHHHHH
Confidence 8888899888877
No 59
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.15 Score=58.18 Aligned_cols=405 Identities=15% Similarity=0.141 Sum_probs=217.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH-HHHH-HhhhcCCChHHHHHHHHHHHHHHhhcccccc--c
Q 002996 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL-CDPL-QRCLKDDDPYVRKTAAICVAKLYDINAELVE--D 118 (860)
Q Consensus 43 l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l-~~~v-~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~--~ 118 (860)
++...++.+++.+.+.--..--.-|.+.++-+.++..... ...+ +....+.+..+|-++....+-+- ..|+.++ .
T Consensus 118 I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg-~~~ss~~~d~ 196 (823)
T KOG2259|consen 118 ISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLG-VSPSSLTHDR 196 (823)
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcc-cCCCcccccH
Confidence 5666777777777765433333445555555444333221 1111 11122233344443333322222 2333332 2
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhcc---c--cC-
Q 002996 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---A--AD- 192 (860)
Q Consensus 119 ~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~---~--~~- 192 (860)
......+..+.+|.|+.|..+|+..|..+.+ .+.+....+.+.++.+.|..+-.....++++..|. | .+
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-----g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSE-----GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-----cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 2344557788899999999999999988865 26676777888888888776666555666665443 2 11
Q ss_pred HHHHHH----HHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhcCCChhHHHHHHHHHHHHHh
Q 002996 193 AREAEN----IVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQ 267 (860)
Q Consensus 193 ~~~~~~----ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls~~~niry~aL~~l~~l~~ 267 (860)
..+-.+ .+..|...++..+-.|..+| ..+--+..+ +.+.+.+.+.+ +++++..- .+-+.
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~i~QTLdK------Klms~lRR---------kr~ah 335 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEIIQQTLDK------KLMSRLRR---------KRTAH 335 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHHHHHHHHH------HHhhhhhh---------hhhcc
Confidence 111122 33344445555555565554 233223222 22222221110 11221000 01111
Q ss_pred hChhhhhccceEEEe--ccCCc-HHHHHHHHHHHHHhcCcccHHHHHHH-HHHhhh---hccHHHHHHHHHHHHHHHHhh
Q 002996 268 RRPTILAHEIKVFFC--KYNDP-IYVKMEKLEIMIKLASDRNIDQVLLE-FKEYAT---EVDVDFVRKAVRAIGRCAIKL 340 (860)
Q Consensus 268 ~~p~~~~~~~~~~~~--l~~d~-~~Ik~~~L~lL~~l~~~~Nv~~Iv~e-L~~y~~---~~d~~~~~~~i~~I~~la~k~ 340 (860)
+.|......- -+-. ..++| ++= . .|++.+..|-.- --.|+. +.=.++|+.+|.+++.+|..-
T Consensus 336 krpk~l~s~G-ewSsGk~~~advpse---e-------~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss 404 (823)
T KOG2259|consen 336 KRPKALYSSG-EWSSGKEWNADVPSE---E-------DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS 404 (823)
T ss_pred cchHHHHhcC-CcccCccccccCchh---h-------ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC
Confidence 2232211000 0000 01122 110 0 111111110000 011222 222467889999999999998
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhh--cccccCCH
Q 002996 341 ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGE--YAERIDNA 418 (860)
Q Consensus 341 ~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGE--y~~~i~~~ 418 (860)
|..+..++++|++++.+.-..|.-.++..+..|..+ -.+++..+..+++.|++ ..+++++++--+|+- |.++- -.
T Consensus 405 P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D-~s~dvRe~l~elL~~~~~~d~~-~i 481 (823)
T KOG2259|consen 405 PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILESLED-RSVDVREALRELLKNARVSDLE-CI 481 (823)
T ss_pred CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCcHH-HH
Confidence 999999999999999999888999999988888654 66778888888988887 357788888777764 22210 01
Q ss_pred HHHHHHHH---hhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc-ccCCCChHHHHHHHHHHHHhc
Q 002996 419 DELLESFL---ESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNA-TVETDNPDLRDRAYIYWRLLS 488 (860)
Q Consensus 419 ~~~l~~~~---~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~-~~~s~~~evrdRA~~y~~ll~ 488 (860)
.-.+..++ .+|+.. |-.++.++.|+..+.+-- ...+..++++.. ......+++-|++|.-.=++-
T Consensus 482 ~m~v~~lL~~L~kyPqD----rd~i~~cm~~iGqnH~~l-v~s~m~rfl~kh~~f~t~e~s~ed~~y~akLilv 550 (823)
T KOG2259|consen 482 DMCVAHLLKNLGKYPQD----RDEILRCMGRIGQNHRRL-VLSNMGRFLEKHTSFATIEPSLEDGFYIAKLILV 550 (823)
T ss_pred HHHHHHHHHHhhhCCCC----cHHHHHHHHHHhccChhh-HHHHHHHHHHhcccccccCccccChhhhhhhhhh
Confidence 11222232 345444 335788999998887754 566777777443 234456778888765544443
No 60
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.27 E-value=0.0009 Score=61.29 Aligned_cols=106 Identities=24% Similarity=0.230 Sum_probs=75.4
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc---cccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~---~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~ 158 (860)
+++.+.+.+.+.++.+|+.|+.|+..+....|+... +.+.++.+.++|+|+|+.|+.+|+.+|..+....+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 667788888999999999999999999876554332 24688999999999999999999999999987643211111
Q ss_pred -cHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 002996 159 -TSHTLSKLLTALNECTEWGQVFILDALSR 187 (860)
Q Consensus 159 -~~~~~~~Ll~~l~~~~~w~q~~il~~L~~ 187 (860)
....+..|++.+.+.+...+...+.+|..
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11235556666655555555555555443
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.25 E-value=0.014 Score=65.42 Aligned_cols=211 Identities=15% Similarity=0.075 Sum_probs=134.7
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 002996 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (860)
++..+.+-|.|+++.+|.-|.++|+.|+.+...+. +.+.+.|.+|.||..++-++.. .... -.+.+.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~----L~~~L~~~~p~vR~aal~al~~-r~~~--------~~~~L~ 153 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW----LEPLLAASEPPGRAIGLAALGA-HRHD--------PGPALE 153 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH----HHHHhcCCChHHHHHHHHHHHh-hccC--------hHHHHH
Confidence 47899999999999999999999999999877655 5777789999999988844443 3222 236788
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Q 002996 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (860)
Q Consensus 127 ~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~ 206 (860)
.+|+|.|+.|...|+.++-.+.... ....|...+.+.++=...-.+..+..+.. +++. +.+...
T Consensus 154 ~~L~d~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d~~~~VR~aA~~al~~lG~---~~A~---~~l~~~ 217 (410)
T TIGR02270 154 AALTHEDALVRAAALRALGELPRRL----------SESTLRLYLRDSDPEVRFAALEAGLLAGS---RLAW---GVCRRF 217 (410)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcccc----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC---HhHH---HHHHHH
Confidence 8899999999999999999986543 23445555677777666666666666543 2222 222222
Q ss_pred hcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhcCCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCC
Q 002996 207 LQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYND 286 (860)
Q Consensus 207 l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d 286 (860)
....+..+...+... +.....+. +...|..++. ++++|..++.++.++.. |..+..-+. .+ +|
T Consensus 218 ~~~~g~~~~~~l~~~--lal~~~~~--------a~~~L~~ll~-d~~vr~~a~~AlG~lg~--p~av~~L~~---~l-~d 280 (410)
T TIGR02270 218 QVLEGGPHRQRLLVL--LAVAGGPD--------AQAWLRELLQ-AAATRREALRAVGLVGD--VEAAPWCLE---AM-RE 280 (410)
T ss_pred HhccCccHHHHHHHH--HHhCCchh--------HHHHHHHHhc-ChhhHHHHHHHHHHcCC--cchHHHHHH---Hh-cC
Confidence 223343333332111 11111221 2334445553 35589999999987753 433322111 11 23
Q ss_pred cHHHHHHHHHHHHHhcCc
Q 002996 287 PIYVKMEKLEIMIKLASD 304 (860)
Q Consensus 287 ~~~Ik~~~L~lL~~l~~~ 304 (860)
+ ++++.+-+.+.+|+--
T Consensus 281 ~-~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 281 P-PWARLAGEAFSLITGM 297 (410)
T ss_pred c-HHHHHHHHHHHHhhCC
Confidence 3 3999999988888763
No 62
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.38 Score=57.30 Aligned_cols=162 Identities=10% Similarity=0.142 Sum_probs=110.9
Q ss_pred HHHHHhh-cCCCCHHHHhHHHHHhcC-CC-hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHH
Q 002996 48 VNTFVKD-SQDPNPLIRALAVRTMGC-IR-VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (860)
Q Consensus 48 in~l~kD-l~~~n~~ir~lALr~l~~-i~-~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~ 124 (860)
+.+++.. +.+.|...|--|++.+=. +. ..+ ...+.++|.|.....+.-+||--.+-+...-+.+|+...- -++.
T Consensus 20 ~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL--avNt 96 (757)
T COG5096 20 VAALSSGRLESSNDYKKIDAMKKIIAQMSLGED-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL--AVNT 96 (757)
T ss_pred HhhhccccccccChHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH--HHHH
Confidence 3455555 999999999888887643 33 333 5677788888888999999998888888888888876542 4577
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH--HHHH
Q 002996 125 LKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN--IVER 202 (860)
Q Consensus 125 l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~--ll~~ 202 (860)
+++=|.|+|+.+.+.|+..+..+... +++...+.-+.+++.+.++...-...-.+.++..-+++.... .+..
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~ 170 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI 170 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence 77778889999999999998887432 233344555556667778876555544444444444333222 3344
Q ss_pred HhhhhcCCChHHHHHH
Q 002996 203 VTPRLQHANCAVVLSA 218 (860)
Q Consensus 203 v~~~l~~~n~aVv~~a 218 (860)
...++...+|-|+-+|
T Consensus 171 l~~l~~D~dP~Vi~nA 186 (757)
T COG5096 171 LKELVADSDPIVIANA 186 (757)
T ss_pred HHHHhhCCCchHHHHH
Confidence 4455677888887777
No 63
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.21 E-value=0.021 Score=59.88 Aligned_cols=225 Identities=16% Similarity=0.234 Sum_probs=136.5
Q ss_pred HHHHhhhc-CCChHHHHHHHHHHHHHH--hhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996 84 DPLQRCLK-DDDPYVRKTAAICVAKLY--DINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (860)
Q Consensus 84 ~~v~~~l~-d~~~~VRk~A~~~l~kl~--~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~ 160 (860)
..+..+|. ..+|+++.+|..++...- ..+.+.+.+.+-++.+.++|+++++.|.-.|+.++..++.... ....+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e--n~~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE--NQEQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh--hHHHHH
Confidence 33455555 478999999999988863 3455777777889999999999999999999999987765432 122334
Q ss_pred HHHHHHHHHhcc--CChhHHHHHHHHHHhccccCHH--HHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHH
Q 002996 161 HTLSKLLTALNE--CTEWGQVFILDALSRYKAADAR--EAENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRN 235 (860)
Q Consensus 161 ~~~~~Ll~~l~~--~~~w~q~~il~~L~~~~~~~~~--~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~ 235 (860)
..+.++|..+.. ++.-.|..-|++|..+...+.. .....+..+..+|.+.|..+...+ .++ ++...+++..+.
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L--~nLS~np~~~~~ 170 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVL--VNLSENPDMTRE 170 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHH--HHhccCHHHHHH
Confidence 456677765433 3566899999999988654421 122334455567777676666565 233 333456766666
Q ss_pred HHH-HhhhHHHhhcCC--ChhHHHHHHHHHHHHHhhC-hh--hhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHH
Q 002996 236 LCK-KMAPPLVTLLSA--EPEIQYVALRNINLIVQRR-PT--ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQ 309 (860)
Q Consensus 236 ~~~-~~~~~L~~lls~--~~niry~aL~~l~~l~~~~-p~--~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~ 309 (860)
++. ++...++.|+.+ +.++-.-+|.-+..|.... +. .+. .-.++.+ -|+.+-.+ .+.
T Consensus 171 Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~------~~~~~~~---------~L~~~~~e--~~~ 233 (254)
T PF04826_consen 171 LLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFV------QDDFSED---------SLFSLFGE--SSQ 233 (254)
T ss_pred HHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceec------cccCCch---------hHHHHHcc--HHH
Confidence 544 333456666643 4566666666665554321 11 111 0011111 12222222 345
Q ss_pred HHHHHHHhhhhccHHHHHHH
Q 002996 310 VLLEFKEYATEVDVDFVRKA 329 (860)
Q Consensus 310 Iv~eL~~y~~~~d~~~~~~~ 329 (860)
..++|..-+...|.+++.++
T Consensus 234 ~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 234 LAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHcCCCHHHhhhc
Confidence 66677766667788887664
No 64
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.78 Score=53.61 Aligned_cols=410 Identities=16% Similarity=0.181 Sum_probs=229.5
Q ss_pred CCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhH----HHHHHHHHhhhcCCCh-HHHHHHHHHHHHHHh-h
Q 002996 38 KSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT----EYLCDPLQRCLKDDDP-YVRKTAAICVAKLYD-I 111 (860)
Q Consensus 38 ~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~----~~l~~~v~~~l~d~~~-~VRk~A~~~l~kl~~-~ 111 (860)
...+|.--.+=|-+.+-|.++.|.++..|-.+++.|..-|+- +.++..+.....+..+ .||..++.++.-+.. .
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 444555556667777888888888888888888777765554 5555566666666444 599999999998885 6
Q ss_pred ccccccc---ccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHh----ccCChhHHHHHHH
Q 002996 112 NAELVED---RGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL----NECTEWGQVFILD 183 (860)
Q Consensus 112 ~p~~~~~---~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l----~~~~~w~q~~il~ 183 (860)
+|+.+.. .-+...+.-+.. +++..|..+|+.+|+.-.+-.. ..|.-- .--..+.... ...+.=.|+..+.
T Consensus 162 ~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~-~nF~~E-~ern~iMqvvcEatq~~d~~i~~aa~~ 239 (859)
T KOG1241|consen 162 DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK-ANFNNE-MERNYIMQVVCEATQSPDEEIQVAAFQ 239 (859)
T ss_pred CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH-HhhccH-hhhceeeeeeeecccCCcHHHHHHHHH
Confidence 8885542 122334444544 5788899999988875322100 000000 0001111111 1124445666666
Q ss_pred HHHhccccCHHHH-----HHHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc--CCChhHHH
Q 002996 184 ALSRYKAADAREA-----ENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLL--SAEPEIQY 256 (860)
Q Consensus 184 ~L~~~~~~~~~~~-----~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll--s~~~niry 256 (860)
+|.+...-.-+-. ..++..-...+++.|..|.+.++-|++ ++...+ +.-++ -+.... ...|--.|
T Consensus 240 ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWs--ticeEE-iD~~~-----e~~e~~d~~~~p~~~~ 311 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWS--TICEEE-IDLAI-----EYGEAVDQGLPPSSKY 311 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HHHHHH-HHHHH-----HHHHHhhcCCCchhhH
Confidence 6654321111111 123344445667889999888854444 233322 11110 112222 12344466
Q ss_pred HHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHH---HHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 002996 257 VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEK---LEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAI 333 (860)
Q Consensus 257 ~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~---L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I 333 (860)
.+..++..++..--+++.++- .+-++||.++.+.| |.++...|..+=+..++.-+.+.++..|-..+..++-+.
T Consensus 312 fa~~a~~~v~P~Ll~~L~kqd---e~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAF 388 (859)
T KOG1241|consen 312 FARQALQDVVPVLLELLTKQD---EDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAF 388 (859)
T ss_pred HHHHHHhHhhHHHHHHHHhCC---CCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHH
Confidence 666666655532222222211 23346667776654 667777777777777777777788888888888888888
Q ss_pred HHHHH-----hhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCccc------HHHHHHHHHHhhccCCchHHHH
Q 002996 334 GRCAI-----KLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT------YESIIATLCESLDTLDEPEAKA 402 (860)
Q Consensus 334 ~~la~-----k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~------~~~~i~~L~~~l~~~~~~~~~~ 402 (860)
|.+-+ +.-+.....+.+++.++.+..-.+.+.+...+-.|....|+. -...+..+.+-+. ++|....
T Consensus 389 GSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~--DePrva~ 466 (859)
T KOG1241|consen 389 GSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN--DEPRVAS 466 (859)
T ss_pred HhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh--hCchHHH
Confidence 76543 233444566788888888766666655444555555444432 1223444444444 3677777
Q ss_pred HHHHHHhhcccccC-----C---------HHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002996 403 SMIWIIGEYAERID-----N---------ADELLESFLESFPE---EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV 463 (860)
Q Consensus 403 ~~~wilGEy~~~i~-----~---------~~~~l~~~~~~~~~---e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~ 463 (860)
.++|-+--.++.+. + -++++..+++.-.. ....-|..+-.|++-+....|.. +.++++++
T Consensus 467 N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~-vy~~v~~~ 543 (859)
T KOG1241|consen 467 NVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD-VYPMVQKL 543 (859)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH-HHHHHHHH
Confidence 78887655443221 1 12445555432222 33566777777777777766654 55555544
No 65
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.18 E-value=0.054 Score=60.68 Aligned_cols=281 Identities=17% Similarity=0.145 Sum_probs=153.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcccc---C--HHHHHHHHHHHhhhhcCC--ChHHHHHHHHHHHhhhccChHHHHH
Q 002996 163 LSKLLTALNECTEWGQVFILDALSRYKAA---D--AREAENIVERVTPRLQHA--NCAVVLSAMILQQMELITSTDVVRN 235 (860)
Q Consensus 163 ~~~Ll~~l~~~~~w~q~~il~~L~~~~~~---~--~~~~~~ll~~v~~~l~~~--n~aVv~~a~~~~~l~~~~~~~~~~~ 235 (860)
+..++..|...+.+.+.+..++|+.+... . ..+...+.+.+...+++. +..+-..+..+..+ + ..+..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~L--L-~~~~~R~ 179 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQML--L-RVDEYRF 179 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHH--h-CCchHHH
Confidence 44555555566777888888888766432 1 122333555666666543 22332222122222 1 2222333
Q ss_pred HHH--HhhhHHHhhcCC---ChhHHHHHHHHHHHHHhhChh--hhhcc--ce-EEEeccCCc-HHHHHHHHHHHHHhcCc
Q 002996 236 LCK--KMAPPLVTLLSA---EPEIQYVALRNINLIVQRRPT--ILAHE--IK-VFFCKYNDP-IYVKMEKLEIMIKLASD 304 (860)
Q Consensus 236 ~~~--~~~~~L~~lls~---~~niry~aL~~l~~l~~~~p~--~~~~~--~~-~~~~l~~d~-~~Ik~~~L~lL~~l~~~ 304 (860)
+.. +.+++|..+|++ ...++|-++-++-.++-..+. .+..+ +. ...++..-+ .-|-|.++-+|..+.+.
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 322 235567777753 458999999999888643221 11111 11 111222222 45667777788888774
Q ss_pred c--------cHHHHHH-HHHHhhh------hccHHHHHHHHHHHHHHHHhhh--hhHHHHHH-HHHHHHHhhhhhhHHHH
Q 002996 305 R--------NIDQVLL-EFKEYAT------EVDVDFVRKAVRAIGRCAIKLE--RAAERCIS-VLLELIKIKVNYVVQEA 366 (860)
Q Consensus 305 ~--------Nv~~Iv~-eL~~y~~------~~d~~~~~~~i~~I~~la~k~~--~~~~~~v~-~ll~ll~~~~~~v~~e~ 366 (860)
. ....++. .+...+. -.|+|+..++-.--..+.+++. +..+.|.. ..-..|+-+.-|-.+.-
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 3 1222333 3333322 2577776554433333333322 12334433 22233444444555666
Q ss_pred HH-HHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHHH------HhhCCCCcHHHHHH
Q 002996 367 II-VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESF------LESFPEEPAQVQLQ 439 (860)
Q Consensus 367 i~-~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~------~~~~~~e~~~v~~~ 439 (860)
|. ....+-.++ -.++.+|++.|+.-.+|...+++++=+|||....+....+++.+ .+-...++++||..
T Consensus 340 W~EN~~kf~~~~----~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~e 415 (429)
T cd00256 340 WRENADRLNEKN----YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYE 415 (429)
T ss_pred HHHHHHHHHhcc----hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence 65 344443222 35778888888766788888999999999999887766666542 33345678899999
Q ss_pred HHHHHHHHhhc
Q 002996 440 LLTATVKLFLK 450 (860)
Q Consensus 440 iLta~~Kl~~~ 450 (860)
+|.|+-|+...
T Consensus 416 AL~avQklm~~ 426 (429)
T cd00256 416 ALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHHh
Confidence 99888888653
No 66
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.17 E-value=0.21 Score=59.37 Aligned_cols=418 Identities=16% Similarity=0.167 Sum_probs=209.4
Q ss_pred CHHHHhHHHHHhcCCCh-------hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc---ccHHHHHHHh
Q 002996 59 NPLIRALAVRTMGCIRV-------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED---RGFLESLKDL 128 (860)
Q Consensus 59 n~~ir~lALr~l~~i~~-------~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~---~~~~~~l~~l 128 (860)
|+.-|..|.|+++-|.. ......+++.+..-+.-..--.|-....++-++.+.+.+.++. +..+..+-.|
T Consensus 622 nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~L 701 (1233)
T KOG1824|consen 622 NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPL 701 (1233)
T ss_pred chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhh
Confidence 45556666666665432 2222333333333222223334555566666776665554442 1345666778
Q ss_pred hcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHH----HHHHHhccccCHHH--HHHHHHH
Q 002996 129 ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFI----LDALSRYKAADARE--AENIVER 202 (860)
Q Consensus 129 L~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~i----l~~L~~~~~~~~~~--~~~ll~~ 202 (860)
+.++|-.|-..|+..+..+....|........+.+..++..+. +|.+|-.. +.++.........+ ...++..
T Consensus 702 isesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~--Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~ 779 (1233)
T KOG1824|consen 702 ISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLR--SPLLQGGALSALLLFFQALVITKEPDLDYISLLSL 779 (1233)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhh--CccccchHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 8999999999999999888776554444444445566655554 34443322 22222222111111 2223322
Q ss_pred HhhhhcCCCh-HH---HHHH--HHHHHhhhccChHHHHHHHHHhhhHHHhhcC--CChhHHHHHHHHHHHHHhhChhhhh
Q 002996 203 VTPRLQHANC-AV---VLSA--MILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTILA 274 (860)
Q Consensus 203 v~~~l~~~n~-aV---v~~a--~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls--~~~niry~aL~~l~~l~~~~p~~~~ 274 (860)
+..-...... .+ .+.+ .+.-.+-.+ .++..+.+..+ .+..+.+ ++..+|..++-.+..+..+.+..-.
T Consensus 780 lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~-~~~~s~s~a~k---l~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~ 855 (1233)
T KOG1824|consen 780 LTAPVYEQVTDGLHKQAYYSIAKCVAALTCA-CPQKSKSLATK---LIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQ 855 (1233)
T ss_pred HcCCcccccccchhHHHHHHHHHHHHHHHHh-ccccchhHHHH---HHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcc
Confidence 2211111111 00 0111 000011111 12222222222 1234554 3556899999999999877554333
Q ss_pred ccce--EEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh-----hhhhHHHH
Q 002996 275 HEIK--VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK-----LERAAERC 347 (860)
Q Consensus 275 ~~~~--~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k-----~~~~~~~~ 347 (860)
+.+. ++.++.+....||..|--.|-.++ ..|....+.++++.+..-. .=+.-+..++.....+ +-+..+.+
T Consensus 856 ~e~~~~iieaf~sp~edvksAAs~ALGsl~-vgnl~~yLpfil~qi~sqp-k~QyLLLhSlkevi~~~svd~~~~~v~~I 933 (1233)
T KOG1824|consen 856 NELKDTIIEAFNSPSEDVKSAASYALGSLA-VGNLPKYLPFILEQIESQP-KRQYLLLHSLKEVIVSASVDGLKPYVEKI 933 (1233)
T ss_pred hhhHHHHHHHcCCChHHHHHHHHHHhhhhh-cCchHhHHHHHHHHHhcch-HhHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3332 456666666889999888887764 4567777777776554311 1011111222221111 11222233
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHH----HHHHhhcccccCC-HHHHH
Q 002996 348 ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASM----IWIIGEYAERIDN-ADELL 422 (860)
Q Consensus 348 v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~----~wilGEy~~~i~~-~~~~l 422 (860)
-+.|++-.+...+..+.=+.+.+..++-.+|+. .+.+|-..+.+ ..+..+..+ =|.+.+-.+.++. -...+
T Consensus 934 W~lL~k~cE~~eegtR~vvAECLGkL~l~epes---LlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~~lk~~i 1009 (1233)
T KOG1824|consen 934 WALLFKHCECAEEGTRNVVAECLGKLVLIEPES---LLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDPLLKQQI 1009 (1233)
T ss_pred HHHHHHhcccchhhhHHHHHHHhhhHHhCChHH---HHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCHHHHHHH
Confidence 333333333333333333344555566666753 44444443422 233333322 2445554444432 23456
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc--------------------cCCCChHHHHHHHH
Q 002996 423 ESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNAT--------------------VETDNPDLRDRAYI 482 (860)
Q Consensus 423 ~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~--------------------~~s~~~evrdRA~~ 482 (860)
..|+..+.+.+.+||...|.++--.+...|+- .++++..+|.+.+ .-++-.|+|+-|+|
T Consensus 1010 g~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl-IrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFE 1088 (1233)
T KOG1824|consen 1010 GDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL-IRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFE 1088 (1233)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHccCHhH-HHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHH
Confidence 67888889999999999999988888777763 3444433333211 12356899999988
Q ss_pred HH-HHhcC
Q 002996 483 YW-RLLST 489 (860)
Q Consensus 483 y~-~ll~~ 489 (860)
.. .||..
T Consensus 1089 cmytLLds 1096 (1233)
T KOG1824|consen 1089 CMYTLLDS 1096 (1233)
T ss_pred HHHHHHHh
Confidence 64 55553
No 67
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.13 E-value=0.018 Score=60.33 Aligned_cols=163 Identities=15% Similarity=0.233 Sum_probs=109.6
Q ss_pred CCCHHHHhHHHHHhcCCCh----hhhHHH--HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc--cccccccHHHHHHHh
Q 002996 57 DPNPLIRALAVRTMGCIRV----DKITEY--LCDPLQRCLKDDDPYVRKTAAICVAKLYDINA--ELVEDRGFLESLKDL 128 (860)
Q Consensus 57 ~~n~~ir~lALr~l~~i~~----~e~~~~--l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p--~~~~~~~~~~~l~~l 128 (860)
+.+|.++..|+-+|++... .+++.. .++.|.+.+.+++|-||.+|+.|+..+---.+ ..++ .+++.+-+.
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik--~~i~~Vc~~ 101 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK--MYIPQVCEE 101 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH--HHHHHHHHH
Confidence 4689999999999999874 333332 36678999999999999999999987654332 2333 355555543
Q ss_pred -hcC-CChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHH-----
Q 002996 129 -ISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVE----- 201 (860)
Q Consensus 129 -L~D-~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~----- 201 (860)
+.+ -|..+..+++.+|..+.-.+. .-.++...+..++..|..-++-.|..+|++|..+.. ++.-..+++.
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~ 178 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLS 178 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchh
Confidence 333 478899999999998854321 223345567788888888888899999999988753 3444444443
Q ss_pred HHhhhhcCC-ChHHHHHH-HHHHHh
Q 002996 202 RVTPRLQHA-NCAVVLSA-MILQQM 224 (860)
Q Consensus 202 ~v~~~l~~~-n~aVv~~a-~~~~~l 224 (860)
.+..+++.. +..+.+.+ .++..+
T Consensus 179 ~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 179 SFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred HHHHHHccCCccHHHHHHHHHHHHH
Confidence 333444443 44666666 344444
No 68
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.12 E-value=0.032 Score=61.57 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=80.8
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh
Q 002996 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (860)
Q Consensus 10 ~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~ 89 (860)
....+++++.+++...|.-+..++..+. ..-++..+.+-|.|.++.+|..|..+|+.++.++-++.+...+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG------SEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 3455667778887777777776654442 234678888999999999999999999999998888777555554
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCCh
Q 002996 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP 134 (860)
Q Consensus 90 l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~ 134 (860)
|.+.+||++|+.++.++.... -+..+..+++|.++
T Consensus 117 --d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~ 151 (335)
T COG1413 117 --DENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDS 151 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchh
Confidence 899999999999999876533 24556667777663
No 69
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.03 E-value=0.0015 Score=59.71 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=80.8
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hh----hHH-HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---c
Q 002996 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DK----ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---V 116 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~lALr~l~~i~~--~e----~~~-~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~ 116 (860)
+++.+.+=+.++|+.+|..|+.+|+++.. ++ +.+ .+++.+.+++.|+++.||+.|+.++..+....++. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 34566666777889999999999998874 22 333 66778889999999999999999999998766532 2
Q ss_pred ccccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 117 EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 117 ~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
.+.+.++.+.++|++.+..+...++.+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23468899999999999999999998887764
No 70
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.78 Score=52.59 Aligned_cols=287 Identities=17% Similarity=0.198 Sum_probs=169.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChh---hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc-cccccc
Q 002996 44 AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD---KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDR 119 (860)
Q Consensus 44 ~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~---e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p-~~~~~~ 119 (860)
..-++-.+..-+.-|.+.+|-.-..++..+... .-...+.+.+.+++.....-=|+.|+.++..+.+-.+ +...+.
T Consensus 94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~ 173 (569)
T KOG1242|consen 94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEF 173 (569)
T ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhh
Confidence 444555666777778888887777777665422 2235667778888888777789999999999987654 344455
Q ss_pred cHHHHHHHhhcCCChhHHH-HHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhH-------HHHHHHHHHhcccc
Q 002996 120 GFLESLKDLISDNNPMVVA-NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG-------QVFILDALSRYKAA 191 (860)
Q Consensus 120 ~~~~~l~~lL~D~d~~V~~-~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~-------q~~il~~L~~~~~~ 191 (860)
+++..+.+...|+++.-.. .+.-++...+.+-+...-..+.+.++.++....+..+-. ...+++.+.-|.-.
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 7899999999997765544 232222222222222222334456677777665544332 22334444333321
Q ss_pred CHHHHHHHHHHH-hhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhh-
Q 002996 192 DAREAENIVERV-TPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR- 268 (860)
Q Consensus 192 ~~~~~~~ll~~v-~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~- 268 (860)
. -...++..+ ....++.-.++ + ++.++... .+..+......+++.+..-| ++++++|-.+..+|.++...
T Consensus 254 ~--llpsll~~l~~~kWrtK~asl--e--llg~m~~~-ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 254 L--LLPSLLGSLLEAKWRTKMASL--E--LLGAMADC-APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred H--hhhhhHHHHHHHhhhhHHHHH--H--HHHHHHHh-chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 0 000111111 11122222222 1 12223222 34445555566777777766 78999999999999998864
Q ss_pred -Chhhhhccce-EEEeccCCcH-HHHHHHHHHHHHh-----cCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 002996 269 -RPTILAHEIK-VFFCKYNDPI-YVKMEKLEIMIKL-----ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL 340 (860)
Q Consensus 269 -~p~~~~~~~~-~~~~l~~d~~-~Ik~~~L~lL~~l-----~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~ 340 (860)
+|+ +++++. .+.|+ .||. +. ...++.|+.. +++.....++.-|..=+.+.+.+.++.++..++.++.-.
T Consensus 327 dN~d-I~~~ip~Lld~l-~dp~~~~-~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 327 DNPD-IQKIIPTLLDAL-ADPSCYT-PECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred ccHH-HHHHHHHHHHHh-cCcccch-HHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 454 445554 45666 4443 33 3445555443 456566666666666677888888899999998888655
No 71
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.00 E-value=0.12 Score=61.57 Aligned_cols=361 Identities=18% Similarity=0.249 Sum_probs=190.2
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccC--HHHH--HHH
Q 002996 124 SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD--AREA--ENI 199 (860)
Q Consensus 124 ~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~--~~~~--~~l 199 (860)
+++.++...+ .++..|+.+|..++.+......-.....+..|++.|..-++=..+..+.+|.++.-.. ..+. ..+
T Consensus 254 k~~~l~~kQe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 254 KLQTLIRKQE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4444555444 5566778888888776422111122344666777777777778888888888776432 1221 346
Q ss_pred HHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHH-HhhhHHHhhcCCChhHHHHHHHHHHHHHhhC--hhhhh-
Q 002996 200 VERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCK-KMAPPLVTLLSAEPEIQYVALRNINLIVQRR--PTILA- 274 (860)
Q Consensus 200 l~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~-~~~~~L~~lls~~~niry~aL~~l~~l~~~~--p~~~~- 274 (860)
++.+...+++.+.-++-.| .++..+ ..+++....+.. .+++.|+.||. +++.+.+++..|..++... ...|.
T Consensus 333 V~kL~kLl~s~~~~l~~~aLrlL~NL--Sfd~~~R~~mV~~GlIPkLv~LL~-d~~~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 333 VEKLLKLLPSENEDLVNVALRLLFNL--SFDPELRSQMVSLGLIPKLVELLK-DPNFREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh--CcCHHHHHHHHHCCCcHHHHHHhC-CCchHHHHHHHHHHhccCHhhHHHHhh
Confidence 7788888888777554444 233222 334444333322 35677888886 4577888998888887642 22332
Q ss_pred -ccce-EEEe-ccCCcHHHHHHHHHHHHHhc-CcccHHHHHHH-----HHHhhhhccHHHHHHHHHHHHHHHHhhhhhHH
Q 002996 275 -HEIK-VFFC-KYNDPIYVKMEKLEIMIKLA-SDRNIDQVLLE-----FKEYATEVDVDFVRKAVRAIGRCAIKLERAAE 345 (860)
Q Consensus 275 -~~~~-~~~~-l~~d~~~Ik~~~L~lL~~l~-~~~Nv~~Iv~e-----L~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~ 345 (860)
..+. +..+ +...+..+....+-++..++ ++.|++.+++. |.+.+-..-+.+ +++-|..++.--++...
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~ 486 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKE 486 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHH
Confidence 1222 1122 22333455666677777665 56777766642 233322111112 22333334433223333
Q ss_pred HHHHH---HHHHHHhh-hhhhHHHHHHHHHHHHHhCccc-HH------HHHHHHHHhhcc-CCchHH-HHHHHHHHhhcc
Q 002996 346 RCISV---LLELIKIK-VNYVVQEAIIVIKDIFRRYPNT-YE------SIIATLCESLDT-LDEPEA-KASMIWIIGEYA 412 (860)
Q Consensus 346 ~~v~~---ll~ll~~~-~~~v~~e~i~~l~~i~~~~p~~-~~------~~i~~L~~~l~~-~~~~~~-~~~~~wilGEy~ 412 (860)
-++++ +++++... ++...-|++-.+.++-. |+. .. ..++.|.+.|.. ..+++. .+++ -++|--+
T Consensus 487 ~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~--~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V-i~~gtla 563 (708)
T PF05804_consen 487 LFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI--PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV-ILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc--CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH-HHHHHHH
Confidence 33343 44444433 22334444444544422 222 12 233444444432 233444 4444 4455443
Q ss_pred cccCCH-----HHHHHHHHhhC--CCCcHHHHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHhcccCCCChHHHHHHH
Q 002996 413 ERIDNA-----DELLESFLESF--PEEPAQVQLQLLTATVKLFLKKPTE----GPQQMIQVVLNNATVETDNPDLRDRAY 481 (860)
Q Consensus 413 ~~i~~~-----~~~l~~~~~~~--~~e~~~v~~~iLta~~Kl~~~~p~~----~~~~~i~~~l~~~~~~s~~~evrdRA~ 481 (860)
..-.-+ ..++..+++-+ ..|+.+.-.|++-++.++....+.- .-.+.+.+++.+ .++.|++||.-|-
T Consensus 564 ~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL--~~d~N~~ir~~~d 641 (708)
T PF05804_consen 564 SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDL--MHDKNAEIRKVCD 641 (708)
T ss_pred CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHH--hcCCCHHHHHHHH
Confidence 211101 12333333322 3578899999999999998874420 002245677876 3578999999988
Q ss_pred HHHHHhcC-CHHHHHH
Q 002996 482 IYWRLLST-DPEAAKD 496 (860)
Q Consensus 482 ~y~~ll~~-~~~~~~~ 496 (860)
..+-++.. +.+-+++
T Consensus 642 ~~Ldii~e~d~~w~~r 657 (708)
T PF05804_consen 642 NALDIIAEYDEEWAER 657 (708)
T ss_pred HHHHHHHHhCHHHHHH
Confidence 88777643 4444433
No 72
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.99 E-value=0.016 Score=60.09 Aligned_cols=181 Identities=20% Similarity=0.182 Sum_probs=109.5
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhc-c-cccccccHHH-------HHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhcc
Q 002996 89 CLKDDDPYVRKTAAICVAKLYDIN-A-ELVEDRGFLE-------SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (860)
Q Consensus 89 ~l~d~~~~VRk~A~~~l~kl~~~~-p-~~~~~~~~~~-------~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~ 159 (860)
.-.+.++-.|..|+..+-++.+.+ + +..+ .+.+ .+...+.|.+..|+..|+.++..+....+...-...
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPP--DFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----H--HHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHH--HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 347799999999999999998877 2 2222 2433 444667788899999999999998876544332344
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHH-HHHHhhhhcCCChHHHHHH--HHHHHhhhcc--ChHHH-
Q 002996 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-VERVTPRLQHANCAVVLSA--MILQQMELIT--STDVV- 233 (860)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~l-l~~v~~~l~~~n~aVv~~a--~~~~~l~~~~--~~~~~- 233 (860)
...++.|++.+.+...+......++|..+...-+ -...+ ...+....+|.|+.+...+ .+..++.... .....
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 5567788888888888887777666665544322 11234 6667778899999988777 2333444332 11111
Q ss_pred HHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChhh
Q 002996 234 RNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI 272 (860)
Q Consensus 234 ~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~ 272 (860)
......+.+.+..+++ .++++|..+-+.+..+.+..|+-
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 1223456777888884 79999999999999998877754
No 73
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.96 E-value=0.0045 Score=53.41 Aligned_cols=84 Identities=29% Similarity=0.383 Sum_probs=60.5
Q ss_pred HHHHhhh-cCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHH
Q 002996 84 DPLQRCL-KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (860)
Q Consensus 84 ~~v~~~l-~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~ 162 (860)
+.+.+.+ .|++++||..|+.++.++. + ...++.|.++++|+|+.|..+|+.+|..+... ..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~----------~~ 63 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--D------PEAIPALIELLKDEDPMVRRAAARALGRIGDP----------EA 63 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--H------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH----------HT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--C------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----------HH
Confidence 4566666 8999999999999999442 1 24778999999999999999999999988532 23
Q ss_pred HHHHHHHhccCChhH-HHHHHHHH
Q 002996 163 LSKLLTALNECTEWG-QVFILDAL 185 (860)
Q Consensus 163 ~~~Ll~~l~~~~~w~-q~~il~~L 185 (860)
+..|.+.+.+.+.|. +...++.|
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhc
Confidence 556666666554443 44444433
No 74
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.96 E-value=2 Score=54.15 Aligned_cols=134 Identities=10% Similarity=0.155 Sum_probs=92.8
Q ss_pred HHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHH--HHHHHHHhhcCCCCHHHHhHHHHHhcCC--ChhhhHHHHHHHHH
Q 002996 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAI--LAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQ 87 (860)
Q Consensus 12 ~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~--L~in~l~kDl~~~n~~ir~lALr~l~~i--~~~e~~~~l~~~v~ 87 (860)
-.++-.+..+-..+|-=+-=.++.+.+.+|.+.. .+--++-.=+.|..-.||-.||.-+|.. ..++.++..+..|.
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~ 898 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQII 898 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHH
Confidence 3444455555555555555555666666654211 1122334456677889999999999974 47999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh---cCCChhHHHHHHHHHHHHh
Q 002996 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI---SDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 88 ~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL---~D~d~~V~~~al~~l~~i~ 148 (860)
..+.|..-.|||.|+--+..+|...|+... +.+.+.++| +|..-.|.--+.-.+..+.
T Consensus 899 erIlDtgvsVRKRvIKIlrdic~e~pdf~~---i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 899 ERILDTGVSVRKRVIKILRDICEETPDFSK---IVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHhCCChhh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999865 455555555 4655445555555555554
No 75
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.25 Score=56.53 Aligned_cols=352 Identities=12% Similarity=0.115 Sum_probs=193.9
Q ss_pred cCCChHHHHHHHHHHHHHHhhcc-cccccccHHHHHHHhhcCCChhHHHHHHHHHHH-HhhcCCCCchhccHHHHHHHHH
Q 002996 91 KDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAE-IEENSSRPIFEITSHTLSKLLT 168 (860)
Q Consensus 91 ~d~~~~VRk~A~~~l~kl~~~~p-~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~-i~~~~~~~~~~~~~~~~~~Ll~ 168 (860)
.|+++-||++-+-+....+..+. +.+. .+.+.-.+.|+...-.-+.+....++. ...+.. ..-...++.+.++++
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~--~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~-~~d~~~~~~~~~~~~ 103 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVL--NLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQ-IVDPRPISIIEILLE 103 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHH--HHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcc-ccCcchhHHHHHHHH
Confidence 67888999888888777776544 3333 355555566653222223333333332 332211 111234566788888
Q ss_pred HhccCChhHHHHHHHHHHhccccCH----H-------------------------------------HHHHHHHHHhhhh
Q 002996 169 ALNECTEWGQVFILDALSRYKAADA----R-------------------------------------EAENIVERVTPRL 207 (860)
Q Consensus 169 ~l~~~~~w~q~~il~~L~~~~~~~~----~-------------------------------------~~~~ll~~v~~~l 207 (860)
.+..+++..|-....+|..+..... . +-..++..+...+
T Consensus 104 ~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai 183 (569)
T KOG1242|consen 104 ELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAI 183 (569)
T ss_pred hcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHh
Confidence 8888888777776666665443210 0 0012333444444
Q ss_pred cCCChHHHHHH--H----HHHHhhhccChHHHHHHHHHhhhHHHh-hcCCChhHHHHHHHHHHHHHhhChh-hhhccceE
Q 002996 208 QHANCAVVLSA--M----ILQQMELITSTDVVRNLCKKMAPPLVT-LLSAEPEIQYVALRNINLIVQRRPT-ILAHEIKV 279 (860)
Q Consensus 208 ~~~n~aVv~~a--~----~~~~l~~~~~~~~~~~~~~~~~~~L~~-lls~~~niry~aL~~l~~l~~~~p~-~~~~~~~~ 279 (860)
+..+++-..++ . ....++....|.... +.+.++. +-+..+.+|-.+-++...+....+. .+..-+..
T Consensus 184 ~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~-----~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llps 258 (569)
T KOG1242|consen 184 IDKKSALNREAALLAFEAAQGNLGPPFEPYIVP-----ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPS 258 (569)
T ss_pred cccchhhcHHHHHHHHHHHHHhcCCCCCchHHh-----hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhh
Confidence 44444322221 1 122232222222211 2333333 3356778888888888777655331 11111111
Q ss_pred -EEeccCCcHHHHHHHHHHHHHhcCccc------HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q 002996 280 -FFCKYNDPIYVKMEKLEIMIKLASDRN------IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE-RAAERCISVL 351 (860)
Q Consensus 280 -~~~l~~d~~~Ik~~~L~lL~~l~~~~N------v~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~-~~~~~~v~~l 351 (860)
+.-+.++-.--|.-++++|-.|+.-.+ ...|+..|.+-+.+..+++++..+.++-+++.... ++...++.++
T Consensus 259 ll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~L 338 (569)
T KOG1242|consen 259 LLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTL 338 (569)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 111112224467778888888877554 45688888899999999999999888888777653 5678889999
Q ss_pred HHHHHhhhhhhHHHHHHHHHH-HHHhC--cccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCCHH-------HH
Q 002996 352 LELIKIKVNYVVQEAIIVIKD-IFRRY--PNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNAD-------EL 421 (860)
Q Consensus 352 l~ll~~~~~~v~~e~i~~l~~-i~~~~--p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~-------~~ 421 (860)
++.+.....++ .+++..+.. -+..+ +....-++..|-+-+.+ .....++..+-|+|.-+.+++++. .+
T Consensus 339 ld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveDp~~lapfl~~L 416 (569)
T KOG1242|consen 339 LDALADPSCYT-PECLDSLGATTFVAEVDAPSLALMVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSL 416 (569)
T ss_pred HHHhcCcccch-HHHHHhhcceeeeeeecchhHHHHHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHH
Confidence 98887765443 333332210 01111 11122233333333432 233455667778888888887654 33
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHhhcCC
Q 002996 422 LESFLESFPEEPAQVQLQLLTATVKLFLKKP 452 (860)
Q Consensus 422 l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p 452 (860)
+..+-..+.+--|+||....-|+..+.-+..
T Consensus 417 lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 417 LPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred hhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 4444445555569999999998888766543
No 76
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.87 E-value=1 Score=50.89 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=70.3
Q ss_pred chHHHhHhccC--CCc-----chHHHHHHHHHHhcCCCCcHHH-HHHHHHHhhcCCCCHHHHhHHHHHhcCCCh------
Q 002996 10 LFTDVVNCMQT--ENL-----ELKKLVYLYLINYAKSQPDLAI-LAVNTFVKDSQDPNPLIRALAVRTMGCIRV------ 75 (860)
Q Consensus 10 ~f~~vi~l~~s--~~~-----~~Krl~Yl~l~~~~~~~~el~~-L~in~l~kDl~~~n~~ir~lALr~l~~i~~------ 75 (860)
..|++++++.. +|+ ..-+-+--.+..|+....|..+ -+--.+...++++|=.-|-.|.-++|++..
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~ 401 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC 401 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH
Confidence 45566665543 222 2223333333444444444222 223345677888998999999999999852
Q ss_pred -hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc
Q 002996 76 -DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (860)
Q Consensus 76 -~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~ 117 (860)
..+++...|.|.....|+.-.|+.+++-|++++-..-|+.+.
T Consensus 402 lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~ 444 (858)
T COG5215 402 LTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIIS 444 (858)
T ss_pred HHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcC
Confidence 234566777788888899999999999999999887666554
No 77
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.86 E-value=0.26 Score=54.40 Aligned_cols=219 Identities=22% Similarity=0.288 Sum_probs=139.6
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 002996 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (860)
Q Consensus 46 L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (860)
.....+.+.+.++++.+|..|...++.+...+.++. +.+++.|.++.||..|+.++.++- +|+ -.+.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~----l~~~l~d~~~~vr~~a~~aLg~~~--~~~------a~~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPL----LRELLSDEDPRVRDAAADALGELG--DPE------AVPPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHH----HHHHhcCCCHHHHHHHHHHHHccC--Chh------HHHHH
Confidence 467889999999999999999999999998766654 689999999999999999888763 233 34556
Q ss_pred HHhhc-CCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHh
Q 002996 126 KDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVT 204 (860)
Q Consensus 126 ~~lL~-D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~ 204 (860)
.++|. |.|..|..+|..+|..+.... .+..|+..+.+...+.+...+ +.
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~---------~~----------- 160 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAAL---------DA----------- 160 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhc---------cc-----------
Confidence 66666 899999999999999886543 245555555544333311000 00
Q ss_pred hhhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEec
Q 002996 205 PRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCK 283 (860)
Q Consensus 205 ~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l 283 (860)
.+. .+...+ ...+..+..+.. .+.+..++ .....+|..+...+..+......+... .+..+
T Consensus 161 -~~~----~~r~~a--~~~l~~~~~~~~--------~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~---l~~~~ 222 (335)
T COG1413 161 -ALL----DVRAAA--AEALGELGDPEA--------IPLLIELLEDEDADVRRAAASALGQLGSENVEAADL---LVKAL 222 (335)
T ss_pred -hHH----HHHHHH--HHHHHHcCChhh--------hHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHH---HHHHh
Confidence 000 233333 122222223322 33455555 356688888888888887664221111 01124
Q ss_pred cCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHH
Q 002996 284 YNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRK 328 (860)
Q Consensus 284 ~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~ 328 (860)
.++...+|.+++..|..+..+.....++.. +.+.+...+..
T Consensus 223 ~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~----l~~~~~~~~~~ 263 (335)
T COG1413 223 SDESLEVRKAALLALGEIGDEEAVDALAKA----LEDEDVILALL 263 (335)
T ss_pred cCCCHHHHHHHHHHhcccCcchhHHHHHHH----HhccchHHHHH
Confidence 466688999999999888877665555444 44444444433
No 78
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.86 E-value=1.2 Score=50.28 Aligned_cols=413 Identities=16% Similarity=0.159 Sum_probs=200.0
Q ss_pred HHHHHHhhcCCCCHHHHh---HHHHHhcCCChhhhHHHHHHHHHhhhcCCCh-HHHHHHHHHHHHHHhhcccccccccHH
Q 002996 47 AVNTFVKDSQDPNPLIRA---LAVRTMGCIRVDKITEYLCDPLQRCLKDDDP-YVRKTAAICVAKLYDINAELVEDRGFL 122 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~---lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~-~VRk~A~~~l~kl~~~~p~~~~~~~~~ 122 (860)
.-=.+.|-.+|.|++.|- +|++-|+.+...-+. ....|.+-+....| .||-.|+..+.++. +.+.+.+ +-
T Consensus 66 lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm--~tssiMkD~~~g~~~~~kp~AiRsL~~Vi--d~~tv~~--~e 139 (898)
T COG5240 66 LFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLM--GTSSIMKDLNGGVPDDVKPMAIRSLFSVI--DGETVYD--FE 139 (898)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhH--HHHHHHHhhccCCccccccHHHHHHHHhc--Ccchhhh--HH
Confidence 334678999999998875 588888887654332 12233333444444 78888888777664 3444442 55
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHH-------hc-------------cCChhHHHHHH
Q 002996 123 ESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTA-------LN-------------ECTEWGQVFIL 182 (860)
Q Consensus 123 ~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~-------l~-------------~~~~w~q~~il 182 (860)
..+....-|+.+.+..+|+..-+.+.+... . ..++.++. +. ..++..|-..|
T Consensus 140 r~l~~a~Vs~~~a~~saalv~aYhLlp~~~----~----~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHal 211 (898)
T COG5240 140 RYLNQAFVSTSMARRSAALVVAYHLLPNNF----N----QTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHAL 211 (898)
T ss_pred HHhhhhccccchhhhhhHHHHhhhhccccH----H----HHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHH
Confidence 677777789999999999888877755431 1 22222221 11 13677899999
Q ss_pred HHHHhccccCHHHHHHHHHHHhhhhcCCCh-HHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhcCCChh-HHHHHH
Q 002996 183 DALSRYKAADAREAENIVERVTPRLQHANC-AVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPE-IQYVAL 259 (860)
Q Consensus 183 ~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~-aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls~~~n-iry~aL 259 (860)
.+|.+..+.|.-...++++.......-+|. |-++-. .+-..+.. +++.. ..+.+.|-.-+++.-+ +..-+-
T Consensus 212 GlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~--n~q~~----~q~rpfL~~wls~k~emV~lE~A 285 (898)
T COG5240 212 GLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE--NSQAL----LQLRPFLNSWLSDKFEMVFLEAA 285 (898)
T ss_pred HHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh--ChHHH----HHHHHHHHHHhcCcchhhhHHHH
Confidence 999887776643333444333222211222 111111 11122211 22222 2233334344544333 555566
Q ss_pred HHHHHHHhhC--hhhhhccceEEEe-ccCCcHHHHHHHHHHHHHhcC--cccHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 002996 260 RNINLIVQRR--PTILAHEIKVFFC-KYNDPIYVKMEKLEIMIKLAS--DRNIDQVLLEFKEYATEVDVDFVRKAVRAIG 334 (860)
Q Consensus 260 ~~l~~l~~~~--p~~~~~~~~~~~~-l~~d~~~Ik~~~L~lL~~l~~--~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~ 334 (860)
+++..++.++ |+.+.+-+..+.. +...-...|-.|+.+|-.++- ++-+..-=.|+...+++.+..+..-+|..+-
T Consensus 286 r~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLL 365 (898)
T COG5240 286 RAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLL 365 (898)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHH
Confidence 7777776665 4444333222211 333345566677777655432 1111111112222233333333333333221
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccc
Q 002996 335 RCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAER 414 (860)
Q Consensus 335 ~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 414 (860)
+.+. +...+..+..+..++.+-.+...--++..++.+--+.|..+...+..|...|-+-..-+-+..++-.+..--..
T Consensus 366 KTGt--~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~ 443 (898)
T COG5240 366 KTGT--EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN 443 (898)
T ss_pred HcCc--hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh
Confidence 1110 12222333333333332222111113345555555667766666666665553211223344555444443333
Q ss_pred cCC-HHHHHHHHHhhCCCC-cHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 002996 415 IDN-ADELLESFLESFPEE-PAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWR 485 (860)
Q Consensus 415 i~~-~~~~l~~~~~~~~~e-~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ 485 (860)
+++ -...|+.+++-..++ -++.-.-||..+.|=.-+.|. -..-+.++++.... .|--||.-|...+.
T Consensus 444 ~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~--P~~yvrhIyNR~iL--EN~ivRsaAv~aLs 512 (898)
T COG5240 444 DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKT--PGKYVRHIYNRLIL--ENNIVRSAAVQALS 512 (898)
T ss_pred CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC--cchHHHHHHHHHHH--hhhHHHHHHHHHHH
Confidence 333 223344444322222 233333455555555444443 23456777766543 34577777766553
No 79
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.85 E-value=0.13 Score=57.79 Aligned_cols=279 Identities=15% Similarity=0.031 Sum_probs=171.9
Q ss_pred CcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHH---HHHHHHhhc-CCCCHHHHhHHHHHhcCCChhhhHHH
Q 002996 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL---AVNTFVKDS-QDPNPLIRALAVRTMGCIRVDKITEY 81 (860)
Q Consensus 6 d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L---~in~l~kDl-~~~n~~ir~lALr~l~~i~~~e~~~~ 81 (860)
+.+|++..=-..+.+++|.+..+.=|==...++.+ -+.+. ++..+..-| .++.+-++..|..++.....+..
T Consensus 12 eAaFlw~~~~~a~~~p~~~l~~la~ldeRL~AhLd-gL~~~G~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~--- 87 (410)
T TIGR02270 12 EAAFLWRQWKRALVAPDYVLEDLAELEERLLAHVD-GLVLAGKAATELLVSALAEADEPGRVACAALALLAQEDALD--- 87 (410)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHhHHHHHHHHHH-HHHHhhHhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHH---
Confidence 44555555556677777776665444222222211 01111 245555566 46778889999988887766654
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHH
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~ 161 (860)
+..+.+++.|.++.||..|+-++.++- ...+.+.|..+|.+.+|.|..+++.++.... .+
T Consensus 88 -~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-~~---------- 147 (410)
T TIGR02270 88 -LRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-HD---------- 147 (410)
T ss_pred -HHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cC----------
Confidence 455788889999999999999998643 2347788999999999999998887665532 11
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhh
Q 002996 162 TLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMA 241 (860)
Q Consensus 162 ~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~ 241 (860)
....+...|.+.++-.....++.|..+...+ .+..+...+++.|+.|...|+ ..+..+..++..
T Consensus 148 ~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~------a~~~L~~al~d~~~~VR~aA~--~al~~lG~~~A~-------- 211 (410)
T TIGR02270 148 PGPALEAALTHEDALVRAAALRALGELPRRL------SESTLRLYLRDSDPEVRFAAL--EAGLLAGSRLAW-------- 211 (410)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc------chHHHHHHHcCCCHHHHHHHH--HHHHHcCCHhHH--------
Confidence 2456677778999999999999998876432 223344568899999998882 233333333322
Q ss_pred hHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh
Q 002996 242 PPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE 320 (860)
Q Consensus 242 ~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~ 320 (860)
.++..+. ......+ ..+..+..+. ..+..... +.-+-.| ..+++.++..|-.+.+..-+..++..+-
T Consensus 212 ~~l~~~~~~~g~~~~-~~l~~~lal~-~~~~a~~~----L~~ll~d-~~vr~~a~~AlG~lg~p~av~~L~~~l~----- 279 (410)
T TIGR02270 212 GVCRRFQVLEGGPHR-QRLLVLLAVA-GGPDAQAW----LRELLQA-AATRREALRAVGLVGDVEAAPWCLEAMR----- 279 (410)
T ss_pred HHHHHHHhccCccHH-HHHHHHHHhC-CchhHHHH----HHHHhcC-hhhHHHHHHHHHHcCCcchHHHHHHHhc-----
Confidence 2333332 2222221 1111111111 11221110 0011122 3399999999999999999888888662
Q ss_pred ccHHHHHHHHHHHHHHH
Q 002996 321 VDVDFVRKAVRAIGRCA 337 (860)
Q Consensus 321 ~d~~~~~~~i~~I~~la 337 (860)
|..+++.+-.++..++
T Consensus 280 -d~~~aR~A~eA~~~It 295 (410)
T TIGR02270 280 -EPPWARLAGEAFSLIT 295 (410)
T ss_pred -CcHHHHHHHHHHHHhh
Confidence 3347776666666555
No 80
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=1.2 Score=52.46 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=63.9
Q ss_pred CChhHHHHHHHHHHHHHhhChhhhhccceEEEe-ccCCcHHHHHHHHHHHHHhcCc--ccHHHHHHHHHHhhhhccHHHH
Q 002996 250 AEPEIQYVALRNINLIVQRRPTILAHEIKVFFC-KYNDPIYVKMEKLEIMIKLASD--RNIDQVLLEFKEYATEVDVDFV 326 (860)
Q Consensus 250 ~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~-l~~d~~~Ik~~~L~lL~~l~~~--~Nv~~Iv~eL~~y~~~~d~~~~ 326 (860)
+.-.+.|=+-+++..+...++..+++.+.++.. +...-...|-.|+.+|.+++-. .-+..-=.||-..+++.+
T Consensus 257 K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~N---- 332 (865)
T KOG1078|consen 257 KSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSN---- 332 (865)
T ss_pred hhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccc----
Confidence 344566666666666666666655554333322 1222355666666666655432 111111112222222222
Q ss_pred HHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHhCcccHHHHHHHHHHhhcc
Q 002996 327 RKAVRAIGRCAI--KLERAAERCISVLLELIKIKVNYVVQE----AIIVIKDIFRRYPNTYESIIATLCESLDT 394 (860)
Q Consensus 327 ~~~i~~I~~la~--k~~~~~~~~v~~ll~ll~~~~~~v~~e----~i~~l~~i~~~~p~~~~~~i~~L~~~l~~ 394 (860)
+.|+.+|+ .+..-.+.-++.|++.+..-...+.+| ++..++.+..++|..+......|.+.|.+
T Consensus 333 ----rsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~ 402 (865)
T KOG1078|consen 333 ----RSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE 402 (865)
T ss_pred ----cchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 22222221 233334445555555554433334443 23455666666777666666666665543
No 81
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.75 E-value=0.59 Score=52.70 Aligned_cols=431 Identities=14% Similarity=0.176 Sum_probs=213.5
Q ss_pred hHHH-hHhccCCCcchHHHHHHHHHHhcCCC-------CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhh----
Q 002996 11 FTDV-VNCMQTENLELKKLVYLYLINYAKSQ-------PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI---- 78 (860)
Q Consensus 11 f~~v-i~l~~s~~~~~Krl~Yl~l~~~~~~~-------~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~---- 78 (860)
|+++ +...+++|.++..-++-.+..+..-+ -|-++ ---.-+-++++|+.|...|+.+-+.|..+|+
T Consensus 222 ~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL--~alt~~~mks~nd~va~qavEfWsticeEeid~~~ 299 (858)
T COG5215 222 FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL--AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEM 299 (858)
T ss_pred hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444 35778888776544443333222111 11111 1122345678999999999999888776553
Q ss_pred -------------------HHHHHHHHHhhhcC-------CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q 002996 79 -------------------TEYLCDPLQRCLKD-------DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (860)
Q Consensus 79 -------------------~~~l~~~v~~~l~d-------~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~ 132 (860)
+.++.|.+.++|.. .+..+-+.|.-|+--.-+...+.+-++ ....+.+-+...
T Consensus 300 e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~ 378 (858)
T COG5215 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSE 378 (858)
T ss_pred HHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCc
Confidence 23467777777753 445677777666655445566655432 445555556555
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCc-hhccHHHHHHHHHHhccCChhHHHHHHHHHHhcc---cc--CHHHHHHHHHHHhhh
Q 002996 133 NPMVVANAVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AA--DAREAENIVERVTPR 206 (860)
Q Consensus 133 d~~V~~~al~~l~~i~~~~~~~~-~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~---~~--~~~~~~~ll~~v~~~ 206 (860)
|-.-.-+|+.++-.+....+..+ -.+.++.++-+.+...|..-|..-.---++.... +. ++. ..+.-.+...
T Consensus 379 ~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--~Hl~~~vsa~ 456 (858)
T COG5215 379 SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC--GHLVLEVSAS 456 (858)
T ss_pred hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc--ccccHHHHHH
Confidence 55556677777777765543332 3345666677777766654444332222222111 10 000 0011111111
Q ss_pred hcC--CChHHHHHH-H-HHHHhhhccC-----hHHHHHHHHHhhhHHHh---hcCCChhHHHHHHHHHHHHHhhChhhhh
Q 002996 207 LQH--ANCAVVLSA-M-ILQQMELITS-----TDVVRNLCKKMAPPLVT---LLSAEPEIQYVALRNINLIVQRRPTILA 274 (860)
Q Consensus 207 l~~--~n~aVv~~a-~-~~~~l~~~~~-----~~~~~~~~~~~~~~L~~---lls~~~niry~aL~~l~~l~~~~p~~~~ 274 (860)
+.. .++-++.++ . .......+.. +..+......+...|+. +..++.|.|-.+..+|..++...|+.+.
T Consensus 457 liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~ 536 (858)
T COG5215 457 LIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVS 536 (858)
T ss_pred HhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHH
Confidence 111 123233333 1 1111111110 11111112223344443 2246788999999999888888787665
Q ss_pred ccceEEEeccCCcHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh----hhHH
Q 002996 275 HEIKVFFCKYNDPIYVKMEKLEIMIKL-----ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAE 345 (860)
Q Consensus 275 ~~~~~~~~l~~d~~~Ik~~~L~lL~~l-----~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~----~~~~ 345 (860)
+-+.-|+ ++-.+||+--..+ +.++ ...++|| ....+.-|..+..+++ +..+
T Consensus 537 ~~~a~~~-------~~~~~kl~~~isv~~q~l~~eD--~~~~~el-----------qSN~~~vl~aiir~~~~~ie~v~D 596 (858)
T COG5215 537 DILAGFY-------DYTSKKLDECISVLGQILATED--QLLVEEL-----------QSNYIGVLEAIIRTRRRDIEDVED 596 (858)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHhhhhhhhHH--HHHHHHH-----------HHHHHHHHHHHHHhcCCCcccHHH
Confidence 4322111 1223333322211 1111 0112232 2223333333344444 3556
Q ss_pred HHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhCcccHH----HHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC---
Q 002996 346 RCISVLLELIKIK-VNYVVQEAIIVIKDIFRRYPNTYE----SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN--- 417 (860)
Q Consensus 346 ~~v~~ll~ll~~~-~~~v~~e~i~~l~~i~~~~p~~~~----~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~--- 417 (860)
..+..++++++.. ...+-.++...|..+...-.+.++ ..++.|.+.+ .+.+.....+++-++|.-++....
T Consensus 597 ~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 597 QLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 6777888888877 345556666666655543233333 3444454445 233444556677778877665432
Q ss_pred --HHHHHHHHHhhCCCC--cHHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhc
Q 002996 418 --ADELLESFLESFPEE--PAQVQLQLLTATVKLFLKKPTE--GPQQMIQVVLNNA 467 (860)
Q Consensus 418 --~~~~l~~~~~~~~~e--~~~v~~~iLta~~Kl~~~~p~~--~~~~~i~~~l~~~ 467 (860)
+..++..+..-...+ .-++|-.+|+.+.-++...... .--++|.-+++.+
T Consensus 676 ~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqa 731 (858)
T COG5215 676 IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQA 731 (858)
T ss_pred HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344555555544443 3567888888888777643321 0123455555544
No 82
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=2.4 Score=51.63 Aligned_cols=229 Identities=21% Similarity=0.221 Sum_probs=122.7
Q ss_pred hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCC
Q 002996 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSR 153 (860)
Q Consensus 75 ~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~~~~ 153 (860)
+|+++|.+++.+...++|.+..||..||-++.|+....|-.+-+ +.+..+.++++- .++..--.|+.+|.|++...-
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl- 412 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGL- 412 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC-
Confidence 46899999999999999999999999999999999877733222 245555556553 235666677778888876531
Q ss_pred CchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhc-CCChHHHHHH-HHHHHhhhccChH
Q 002996 154 PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQ-HANCAVVLSA-MILQQMELITSTD 231 (860)
Q Consensus 154 ~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~-~~n~aVv~~a-~~~~~l~~~~~~~ 231 (860)
+.+..+..++- .|++.|. |. . .+-+ +.+..|.=+| -+.+++.-.-++.
T Consensus 413 ----Llps~l~dVvp-----------lI~kaL~-Yd--------~------~~G~~s~G~~VRDaAcY~~WAf~Rays~~ 462 (1133)
T KOG1943|consen 413 ----LLPSLLEDVVP-----------LILKALH-YD--------V------RRGQHSVGQHVRDAACYVCWAFARAYSPS 462 (1133)
T ss_pred ----cchHHHHHHHH-----------HHHHHhh-hh--------h------hhcccccccchHHHHHHHHHHHHhcCChh
Confidence 11111111111 1111111 10 0 0001 2233444334 2233343333444
Q ss_pred HHHHHHHHhhhHHHh--hcCCChhHHHHHHHHHHHHHhhChhh-----hhccceEEEeccCCcHHHHHH---HHHHHHHh
Q 002996 232 VVRNLCKKMAPPLVT--LLSAEPEIQYVALRNINLIVQRRPTI-----LAHEIKVFFCKYNDPIYVKME---KLEIMIKL 301 (860)
Q Consensus 232 ~~~~~~~~~~~~L~~--lls~~~niry~aL~~l~~l~~~~p~~-----~~~~~~~~~~l~~d~~~Ik~~---~L~lL~~l 301 (860)
..+.+..+++..|+. +...+-|.|+.|--++...+.+.++. +..+ -|..++..+ =+++-..+
T Consensus 463 ~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~--------~dy~sV~~rsNcy~~l~~~i 534 (1133)
T KOG1943|consen 463 DLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLIST--------IDYFSVTNRSNCYLDLCVSI 534 (1133)
T ss_pred hhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhh--------cchhhhhhhhhHHHHHhHHH
Confidence 444455555555443 44778899999999999988886543 1111 111121111 11111111
Q ss_pred cC-cccHHHHHHHHHHh-hhhccHHHHHHHHHHHHHHHHhhhhh
Q 002996 302 AS-DRNIDQVLLEFKEY-ATEVDVDFVRKAVRAIGRCAIKLERA 343 (860)
Q Consensus 302 ~~-~~Nv~~Iv~eL~~y-~~~~d~~~~~~~i~~I~~la~k~~~~ 343 (860)
+- +.=.+.++++|..- +..=|...+..+..++.+++...++.
T Consensus 535 a~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~ 578 (1133)
T KOG1943|consen 535 AEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY 578 (1133)
T ss_pred HhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh
Confidence 11 11123344444332 33346667777777888877776653
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.47 E-value=0.034 Score=57.69 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=83.4
Q ss_pred cCCCcchHHHHHHHHHHhcCCC-----CcHHHH----HHHHHHhhcCCCCHHHHhHHHHHhcCCC------hhhhHHHHH
Q 002996 19 QTENLELKKLVYLYLINYAKSQ-----PDLAIL----AVNTFVKDSQDPNPLIRALAVRTMGCIR------VDKITEYLC 83 (860)
Q Consensus 19 ~s~~~~~Krl~Yl~l~~~~~~~-----~el~~L----~in~l~kDl~~~n~~ir~lALr~l~~i~------~~e~~~~l~ 83 (860)
.+.|-+.|.=+..-+..+...+ ++...- +...+.+.++|.+..+...|+.+++.+. ....++.++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4455555555666666665544 222222 2246678888888889999998888764 234568889
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccH-HHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGF-LESLKDLISDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~-~~~l~~lL~D~d~~V~~~al~~l~~i~~~~ 151 (860)
+.+.+.+.|++..||..|..|+..+++..+ ... .. .+.+...+.++++.|...++..+..+...-
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~--~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-YSP--KILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS--H----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999776 111 24 678888899999999999888887776543
No 84
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.47 E-value=1.9 Score=51.56 Aligned_cols=235 Identities=18% Similarity=0.224 Sum_probs=141.1
Q ss_pred HhHHHHHhcCCC----hhhhHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhh---cccccccccHHHHHHH-hhcCCC
Q 002996 63 RALAVRTMGCIR----VDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI---NAELVEDRGFLESLKD-LISDNN 133 (860)
Q Consensus 63 r~lALr~l~~i~----~~e~~~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~---~p~~~~~~~~~~~l~~-lL~D~d 133 (860)
.+.-+...+..+ ..++...++..+...+.+ ..|..--+|..++.|.-.. +|+.... |...... +..|.-
T Consensus 427 qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~ 504 (1005)
T KOG2274|consen 427 QEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVP 504 (1005)
T ss_pred HHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCC
Confidence 444444444444 345556666667777765 6777666999999987664 3444432 4443333 445777
Q ss_pred hhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhh-----hc
Q 002996 134 PMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR-----LQ 208 (860)
Q Consensus 134 ~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~-----l~ 208 (860)
+.+..+|+.+++..+. ++.+..+.+..+.-|.....+.+.=.-..+++.|...+.-|++.+..+=+.+.|. ++
T Consensus 505 ~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k 582 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK 582 (1005)
T ss_pred CchhHHHHHHHHhccC--ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH
Confidence 8899999999988873 3445667777777777776777776777788888877777766554333333332 23
Q ss_pred -CCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhcC-C----ChhHHHHHHHHHHHHHhhChhhhh----cc-
Q 002996 209 -HANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLLS-A----EPEIQYVALRNINLIVQRRPTILA----HE- 276 (860)
Q Consensus 209 -~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls-~----~~niry~aL~~l~~l~~~~p~~~~----~~- 276 (860)
+.+|-|.-.+ -++..+-. ..+-...++.++.|.|++.|. . .+.....+++-|..++...|.-+. .+
T Consensus 583 ~s~DP~V~~~~qd~f~el~q--~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~ 660 (1005)
T KOG2274|consen 583 YSEDPQVASLAQDLFEELLQ--IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA 660 (1005)
T ss_pred hcCCchHHHHHHHHHHHHHH--HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3455333333 23332211 122233456778888998773 2 367899999999988877653221 11
Q ss_pred ce-EEEe-ccCCcHHHHHHHHHHHHHhcC
Q 002996 277 IK-VFFC-KYNDPIYVKMEKLEIMIKLAS 303 (860)
Q Consensus 277 ~~-~~~~-l~~d~~~Ik~~~L~lL~~l~~ 303 (860)
.. +..| +++||...=..+=|.|-.+.+
T Consensus 661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 661 FPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred hHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 11 2233 667775555555566655544
No 85
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.36 E-value=1.7 Score=52.31 Aligned_cols=405 Identities=15% Similarity=0.174 Sum_probs=202.8
Q ss_pred hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 75 ~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
...+-..+-+-..++..|..|.||++++--+..+-+.-++........+....|.+|..-.|..+|+..+..+...-...
T Consensus 231 ~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~ 310 (759)
T KOG0211|consen 231 DDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD 310 (759)
T ss_pred hHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence 34455677777888899999999999999998888777765555567888999999888899999988888776542211
Q ss_pred chhccHHHHHHHHHHhccCChhHHHHHH-----HHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH----HHH-HHh
Q 002996 155 IFEITSHTLSKLLTALNECTEWGQVFIL-----DALSRYKAADAREAENIVERVTPRLQHANCAVVLSA----MIL-QQM 224 (860)
Q Consensus 155 ~~~~~~~~~~~Ll~~l~~~~~w~q~~il-----~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a----~~~-~~l 224 (860)
. +..+.....+++...+ ..|-+.+.. .+-..+.+ +. ............+++.-..+.+++ --+ .++
T Consensus 311 ~-d~~~~~~~~l~~~~~d-~~~~v~~~~~~~~~~L~~~~~~-~~-~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 311 D-DVVKSLTESLVQAVED-GSWRVSYMVADKFSELSSAVGP-SA-TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred h-hhhhhhhHHHHHHhcC-hhHHHHHHHhhhhhhHHHHhcc-cc-CcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 1 2223334444444333 234333221 11111111 00 000111122222222222222222 011 112
Q ss_pred hhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhCh--hhhhccceEEE-eccCCcHHHHHHHHHHHHH
Q 002996 225 ELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIKVFF-CKYNDPIYVKMEKLEIMIK 300 (860)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p--~~~~~~~~~~~-~l~~d~~~Ik~~~L~lL~~ 300 (860)
+....++... ..+.+.+.-+. ++...+|-.....+..+....| ..+......+. .+.+++..++.--.+.+..
T Consensus 387 ~~~~~~~i~~---~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 387 NASCYPNIPD---SSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred Ccccccccch---hhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 1110111111 11122222232 3344455444444433332222 12222223332 3455566677666643322
Q ss_pred ---hcCcccHHHHHHHHHHh----hhhccHHHHHHHHHHHHHHHHhhh-h-hHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 002996 301 ---LASDRNIDQVLLEFKEY----ATEVDVDFVRKAVRAIGRCAIKLE-R-AAERCISVLLELIKIKVNYVVQEAIIVIK 371 (860)
Q Consensus 301 ---l~~~~Nv~~Iv~eL~~y----~~~~d~~~~~~~i~~I~~la~k~~-~-~~~~~v~~ll~ll~~~~~~v~~e~i~~l~ 371 (860)
.-+..++..+.+-++.- ..+..-..+.++++.|-.++.... . ..+.+-..+...+......+.+.+...+.
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 12223333444433332 223333455566666666665432 1 11223333334444444456666666776
Q ss_pred HHHHhCc--ccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC---HHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 002996 372 DIFRRYP--NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVK 446 (860)
Q Consensus 372 ~i~~~~p--~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~---~~~~l~~~~~~~~~e~~~v~~~iLta~~K 446 (860)
.++..+. ......+.++.....+- .--.+.+.+..+-+.+..... ..+++-.+.+--.+-.+.||.-++-.+-|
T Consensus 544 ~l~~~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 544 ALVETFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred HHHHHhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 6666544 22334444443322110 011244555555555444433 34566666655556678999988777777
Q ss_pred HhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002996 447 LFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 488 (860)
Q Consensus 447 l~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~ 488 (860)
+...-........|..+++... .+.|.|+|-||-.-...+.
T Consensus 623 i~~~L~~~~~~~~v~pll~~L~-~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 623 ILKLLDESVRDEEVLPLLETLS-SDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHhhcchHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHHH
Confidence 7544322224667777777655 4689999999988777665
No 86
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.36 E-value=0.4 Score=55.14 Aligned_cols=133 Identities=18% Similarity=0.245 Sum_probs=110.4
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-----hhhhHH-------HHHHHHH
Q 002996 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDKITE-------YLCDPLQ 87 (860)
Q Consensus 20 s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-----~~e~~~-------~l~~~v~ 87 (860)
-+|..--|-+-+++..+.+-.|.+++---+.+.+=|.+..-..||.-+...+++. .++|.+ .++.-+.
T Consensus 273 ~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ 352 (1128)
T COG5098 273 LPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLV 352 (1128)
T ss_pred cccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHH
Confidence 3555555777889999999999999999999999999999999999999999873 455654 6677777
Q ss_pred hhhcCCChHHHHHHHHHHHHHHhhcccccc-cccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 88 RCLKDDDPYVRKTAAICVAKLYDINAELVE-DRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 88 ~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~-~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
.-+.|.+||+|-||+..+.|+|+.+..... .+.++......|.|+...|..+|+.++..+.-..|
T Consensus 353 ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 353 ERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 888999999999999999999987655443 34577888889999999999999999988765544
No 87
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.35 E-value=0.02 Score=50.38 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=56.0
Q ss_pred hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHH
Q 002996 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAV 141 (860)
Q Consensus 75 ~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al 141 (860)
..+..+.++++|.+++.|+++-||-.|+.|++.+.+..++.+-. .+.++.|.+++.|.|+.|..+|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 56677899999999999999999999999999999887655432 23567778889999999988873
No 88
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.33 E-value=0.21 Score=52.67 Aligned_cols=217 Identities=19% Similarity=0.195 Sum_probs=144.2
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHHHH------HHHHHhhhcCCCh--HHHHHHHHHHHHHHh-hcccc--
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYL------CDPLQRCLKDDDP--YVRKTAAICVAKLYD-INAEL-- 115 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~-~~e~~~~l------~~~v~~~l~d~~~--~VRk~A~~~l~kl~~-~~p~~-- 115 (860)
+..|..-|.+++..+|--|+-+||+|. ..+.+++. ..++..++.++.+ ..-|+|--.+..+.+ ++|.-
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 445777788999999999999999997 44555432 5677777777655 445788888888887 45531
Q ss_pred cccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchh--ccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCH
Q 002996 116 VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE--ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA 193 (860)
Q Consensus 116 ~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~--~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~ 193 (860)
-.-..-++.|.+|+...|+.|+.-|+-++..+... +.++.. +......+|+..|...+--.|.-+||.+......++
T Consensus 239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D 317 (526)
T COG5064 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD 317 (526)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc
Confidence 11123578899999999999999999999888643 222222 223445678888877776778888998887765543
Q ss_pred HHHHH-----HHHHHhhhhcCCChHHHHHHHHHHHhhhcc--ChHHHHHHH-HHhhhHHHhhcC-CChhHHHHHHHHHHH
Q 002996 194 REAEN-----IVERVTPRLQHANCAVVLSAMILQQMELIT--STDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINL 264 (860)
Q Consensus 194 ~~~~~-----ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~--~~~~~~~~~-~~~~~~L~~lls-~~~niry~aL~~l~~ 264 (860)
....- .+..+.++|.|.-..+.-+|+ +.+.+++ +.+-++.++ .+++|+|+.+|+ .+.-+|--|..++..
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~~ke~irKEaC--WTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSSPKENIRKEAC--WTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred cceehheecccHHHHHHHhcChhhhhhhhhh--eeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33222 244555667665556666662 2222232 223333333 367889999886 577788888888877
Q ss_pred HHh
Q 002996 265 IVQ 267 (860)
Q Consensus 265 l~~ 267 (860)
...
T Consensus 396 ats 398 (526)
T COG5064 396 ATS 398 (526)
T ss_pred hhc
Confidence 654
No 89
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.33 E-value=0.03 Score=63.74 Aligned_cols=173 Identities=21% Similarity=0.272 Sum_probs=116.6
Q ss_pred hHHHh-HhccC----CCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhhHHHH
Q 002996 11 FTDVV-NCMQT----ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKITEYL 82 (860)
Q Consensus 11 f~~vi-~l~~s----~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~-~~n~~ir~lALr~l~~i~--~~e~~~~l 82 (860)
|-.++ ....+ +|-++.+.+|+.+..+.--..+...--...+..-+. +|+|.||+.|.-.||.+. -...++..
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~ 972 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH 972 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH
Confidence 44444 44444 677889999998876644333322222233333443 899999999999999865 35666777
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHH
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~ 162 (860)
...+.+-|.|.+..|||++.|.+.-+.-...=.++ +....+..+|.|.|..+---|=..+.+++.++..- + .-
T Consensus 973 t~yLyrrL~De~~~V~rtclmti~fLilagq~KVK--Gqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~-y----n~ 1045 (1128)
T COG5098 973 THYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVK--GQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTM-Y----NG 1045 (1128)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHccceeec--cchhhhHhhccCCcchHHHHHHHHHHHHHhcccch-h----hh
Confidence 77789999999999999999999988765543333 67888999999999998777778888998775321 1 11
Q ss_pred HHHHHHHhccCChhH---HHHHHHHHHhccc
Q 002996 163 LSKLLTALNECTEWG---QVFILDALSRYKA 190 (860)
Q Consensus 163 ~~~Ll~~l~~~~~w~---q~~il~~L~~~~~ 190 (860)
+-.+...|...++-+ --.|+++|..+..
T Consensus 1046 fidifs~ls~~ae~g~e~fk~II~FLt~fI~ 1076 (1128)
T COG5098 1046 FIDIFSTLSSDAENGQEPFKLIIGFLTDFIS 1076 (1128)
T ss_pred hHHHHHHcCchhhcCCCcHHHHHHHHHHHHH
Confidence 122333343323333 2357888887764
No 90
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.27 E-value=0.42 Score=50.48 Aligned_cols=288 Identities=16% Similarity=0.197 Sum_probs=137.4
Q ss_pred hHHHhHhccCCCcchHH-HHHHHHHHhcCCCCc-----HHHHHHHHHHhhc-CCCCHHHHhHHHHHhcCCChhh------
Q 002996 11 FTDVVNCMQTENLELKK-LVYLYLINYAKSQPD-----LAILAVNTFVKDS-QDPNPLIRALAVRTMGCIRVDK------ 77 (860)
Q Consensus 11 f~~vi~l~~s~~~~~Kr-l~Yl~l~~~~~~~~e-----l~~L~in~l~kDl-~~~n~~ir~lALr~l~~i~~~e------ 77 (860)
||++.+-+-|+|++... -+|=+=..+.++++- +.-=++..|..-+ ++.+.+..--|--+|.+|.+-.
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 56677767777776543 345555555554421 1111223333333 3333333333444444443211
Q ss_pred hH-HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc---cccccccHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhcC
Q 002996 78 IT-EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDN--NPMVVANAVAALAEIEENS 151 (860)
Q Consensus 78 ~~-~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p---~~~~~~~~~~~l~~lL~D~--d~~V~~~al~~l~~i~~~~ 151 (860)
++ -.-.|-..++|.+++.-||--|+-|+..+---++ |.+-.-+..+.+..+|... +...+.++.-.|..++...
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 11 1223445667777777777777777766543222 1121122333333333221 1233333333333333221
Q ss_pred CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhccC--
Q 002996 152 SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITS-- 229 (860)
Q Consensus 152 ~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~-- 229 (860)
-.|.+-......+..+.+++.+.++-|+..| .+++.++++
T Consensus 233 ------------------------------------nP~P~w~~isqalpiL~KLiys~D~evlvDA--~WAiSYlsDg~ 274 (526)
T COG5064 233 ------------------------------------NPPPDWSNISQALPILAKLIYSRDPEVLVDA--CWAISYLSDGP 274 (526)
T ss_pred ------------------------------------CCCCchHHHHHHHHHHHHHHhhcCHHHHHHH--HHHHHHhccCc
Confidence 1112222334445555555666677666665 223333322
Q ss_pred hHHHHHHHH-HhhhHHHhhcC-CChhHHHHHHHHHHHHHhhCh---hhhhcc--ceEEEe-ccCCcHHHHHHHHHHHHHh
Q 002996 230 TDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP---TILAHE--IKVFFC-KYNDPIYVKMEKLEIMIKL 301 (860)
Q Consensus 230 ~~~~~~~~~-~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p---~~~~~~--~~~~~~-l~~d~~~Ik~~~L~lL~~l 301 (860)
.+.+..++. .+.+.|+.+|+ .+..++--+|+.+..|+.-.. .++.++ ++.|.. +.+.-.-||+++-=.+..+
T Consensus 275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 223332221 22334677775 567888889998888775321 111111 222222 3333367888877666665
Q ss_pred cCcccHHHH--------HHHHHHhhhhccHHHHHHHHHHHHHHH
Q 002996 302 ASDRNIDQV--------LLEFKEYATEVDVDFVRKAVRAIGRCA 337 (860)
Q Consensus 302 ~~~~Nv~~I--------v~eL~~y~~~~d~~~~~~~i~~I~~la 337 (860)
+..|.++| +.-|.+.++..+.-.+.+++-+|....
T Consensus 355 -TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 355 -TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred -ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444442 334555566677778888888887654
No 91
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=3.4 Score=48.08 Aligned_cols=347 Identities=16% Similarity=0.226 Sum_probs=187.5
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 002996 27 KLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVA 106 (860)
Q Consensus 27 rl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~ 106 (860)
||.|+|+.- .+=|...|=.=.|.+.-+-+.-.|-=+++..|-+ .+.++...+...|++=|.+++|.----|..|+.
T Consensus 61 KLlyI~llg---~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~~I~ 136 (938)
T KOG1077|consen 61 KLLYIYLLG---YDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALHCIA 136 (938)
T ss_pred HHHHHHHhc---CccccchHHHHHHhhcCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHH
Confidence 456666543 2223333322223333333344554555555544 347888888999999999999988788888888
Q ss_pred HHHhhcccccccccHHHHHHHhhcCC--ChhHH-HHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChh----HHH
Q 002996 107 KLYDINAELVEDRGFLESLKDLISDN--NPMVV-ANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW----GQV 179 (860)
Q Consensus 107 kl~~~~p~~~~~~~~~~~l~~lL~D~--d~~V~-~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w----~q~ 179 (860)
-+-.. |..+ .|.+.+.++|-.. ...|. .+|+++| .+-+..|+. +.. .....+++..|.|.+ . .-+
T Consensus 137 niG~r--e~~e--a~~~DI~KlLvS~~~~~~vkqkaALclL-~L~r~spDl-~~~-~~W~~riv~LL~D~~-~gv~ta~~ 208 (938)
T KOG1077|consen 137 NIGSR--EMAE--AFADDIPKLLVSGSSMDYVKQKAALCLL-RLFRKSPDL-VNP-GEWAQRIVHLLDDQH-MGVVTAAT 208 (938)
T ss_pred hhccH--hHHH--HhhhhhHHHHhCCcchHHHHHHHHHHHH-HHHhcCccc-cCh-hhHHHHHHHHhCccc-cceeeehH
Confidence 77532 2222 3667788888643 34454 4555555 444444431 110 134566666666543 2 245
Q ss_pred HHHHHHHhccccCHHH-----HHHHHHHHh---hhhc------CCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHH
Q 002996 180 FILDALSRYKAADARE-----AENIVERVT---PRLQ------HANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPL 244 (860)
Q Consensus 180 ~il~~L~~~~~~~~~~-----~~~ll~~v~---~~l~------~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L 244 (860)
.++.+|.++.|.+-.. ...+...+. .-++ -.+|=..... .++.++....++..... +...|
T Consensus 209 sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~----l~evl 284 (938)
T KOG1077|consen 209 SLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRAR----LNEVL 284 (938)
T ss_pred HHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHH----HHHHH
Confidence 6777777766543211 111111111 0000 0122111111 22333322222222221 22333
Q ss_pred HhhcCC-----------ChhHHHHHHH-HHHHHHhh--ChhhhhccceEE-EeccCCcHHHHHHHHHHHHHhcCcccHHH
Q 002996 245 VTLLSA-----------EPEIQYVALR-NINLIVQR--RPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRNIDQ 309 (860)
Q Consensus 245 ~~lls~-----------~~niry~aL~-~l~~l~~~--~p~~~~~~~~~~-~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~ 309 (860)
-++|++ +.|.+-.+|- +|..+... .|+++.+....+ ..+.+..+.||-.+||-+..||+.+=..+
T Consensus 285 ~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~d 364 (938)
T KOG1077|consen 285 ERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSID 364 (938)
T ss_pred HHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHH
Confidence 444321 1244444443 33333322 345555543322 11445667899999999999999876666
Q ss_pred HHHHHHH----hhh-hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCc---ccH
Q 002996 310 VLLEFKE----YAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP---NTY 381 (860)
Q Consensus 310 Iv~eL~~----y~~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p---~~~ 381 (860)
.|+.=.+ -++ +.|..+|++++.-+..+|.. ..++.+|+-|++.|..+...+.+|.+.-+.-+-++|. +.+
T Consensus 365 avK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~Wy 442 (938)
T KOG1077|consen 365 AVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWY 442 (938)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchh
Confidence 6654333 233 67899999999988877764 5678999999999999877777777665544445543 234
Q ss_pred HHHHHHHHHh
Q 002996 382 ESIIATLCES 391 (860)
Q Consensus 382 ~~~i~~L~~~ 391 (860)
..++-+|++.
T Consensus 443 VdviLqLiri 452 (938)
T KOG1077|consen 443 VDVILQLIRI 452 (938)
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 92
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.24 E-value=0.052 Score=65.81 Aligned_cols=201 Identities=14% Similarity=0.152 Sum_probs=127.3
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHH-hcCCCCcHHHHHH-----HHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHH
Q 002996 8 SSLFTDVVNCMQTENLELKKLVYLYLIN-YAKSQPDLAILAV-----NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEY 81 (860)
Q Consensus 8 s~~f~~vi~l~~s~~~~~Krl~Yl~l~~-~~~~~~el~~L~i-----n~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~ 81 (860)
..+||++-.+...++-+.-|++|--..- +|+.-- -.+..+ |.+.+|.++. -+-....+-....+...
T Consensus 506 eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~-rFle~~q~~~~~g~~n~~nse------t~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY-RFLELTQELRQAGMLNDPNSE------TAPEQNYNTELQALHHT 578 (1431)
T ss_pred hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH-HHHHHHHHHHhcccccCcccc------cccccccchHHHHHHHH
Confidence 3467777777666566666776643211 111100 011122 2233344332 01111112223456677
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchh-ccH
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITS 160 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~-~~~ 160 (860)
+...+..+|.|+.|+||++=+..+..|+......-.++-++..|...|+|+|....++-+-.+..++---+ +. ...
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~se 655 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSE 655 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHH
Confidence 77788899999999999999999988887655444444567999999999999988765544443322111 11 112
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcccc---CHHHHHHHHHHHhhhhcCCChHHHHHH
Q 002996 161 HTLSKLLTALNECTEWGQVFILDALSRYKAA---DAREAENIVERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~---~~~~~~~ll~~v~~~l~~~n~aVv~~a 218 (860)
-.++-|...|.|..|...++.|+.|..++.. ......++++.+.++|-|.|.=|..++
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAV 716 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHH
Confidence 2456777889999999999999999877643 234557889999999999998777766
No 93
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.56 Score=50.10 Aligned_cols=183 Identities=17% Similarity=0.204 Sum_probs=116.6
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHH----HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhH----
Q 002996 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA----VNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT---- 79 (860)
Q Consensus 8 s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~----in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~---- 79 (860)
+.++--++++-.++|...+|-.-=++.++-+....--.|+ +..+..-+.+.|+.+|--+-+++++|+...-.
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 4456667788888888888866555555443322211121 23466677899999999999999999865433
Q ss_pred ----HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhc---ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 80 ----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN---AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 80 ----~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~---p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
+-+++.+.++..|.++-|+=-|.+|+..+-... -+++ +.+-+|.+.+||.|.---.+.+.+..+..|.-+..
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv-~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV-EAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH-hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 457889999999999999999999988775421 1223 34677889999977554445555666644433321
Q ss_pred CCchhccHHHHHHHHHHhcc-CChhHHHHHHHHHHhcccc
Q 002996 153 RPIFEITSHTLSKLLTALNE-CTEWGQVFILDALSRYKAA 191 (860)
Q Consensus 153 ~~~~~~~~~~~~~Ll~~l~~-~~~w~q~~il~~L~~~~~~ 191 (860)
....-.-...++-|+..|.- -+|-.|+.....|..+...
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 11111112234445444432 3566888888888776543
No 94
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.09 E-value=0.011 Score=40.13 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=25.5
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhh
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~ 111 (860)
++|.+.+++.|+++.||+.|+.|+.++.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999999998764
No 95
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.04 E-value=0.018 Score=44.86 Aligned_cols=49 Identities=31% Similarity=0.376 Sum_probs=37.8
Q ss_pred HHHHhHHHHHhcCCC--h----hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 002996 60 PLIRALAVRTMGCIR--V----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKL 108 (860)
Q Consensus 60 ~~ir~lALr~l~~i~--~----~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl 108 (860)
|.+|..|+.+||++. . ....+.+++.+.++|.|+++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 568888999998765 1 234467788888888888889999999888654
No 96
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=5.1 Score=49.51 Aligned_cols=147 Identities=16% Similarity=0.248 Sum_probs=111.6
Q ss_pred CcccchHHHhHhccCC-----CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh---
Q 002996 6 DVSSLFTDVVNCMQTE-----NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK--- 77 (860)
Q Consensus 6 d~s~~f~~vi~l~~s~-----~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e--- 77 (860)
....++-.+++-+.+. |-...+.+=.++..++..-|.+++--.+.|..-+.+.+...|+.-+..++++...+
T Consensus 267 ~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d 346 (1251)
T KOG0414|consen 267 GSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRD 346 (1251)
T ss_pred ccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 3456777788766654 45567888889999999999888888888888788889999999999998864322
Q ss_pred -----hH----HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc-ccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002996 78 -----IT----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPMVVANAVAALAEI 147 (860)
Q Consensus 78 -----~~----~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~-~~~~~~l~~lL~D~d~~V~~~al~~l~~i 147 (860)
+. ..+...+..-+.|.++|||-+++-...|+++..-.-... ..++.....-|.|++..|..+|+.++...
T Consensus 347 ~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 347 EELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSL 426 (1251)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 22 236667788888999999999999999999866433321 12333444557799999999999999888
Q ss_pred hhcCC
Q 002996 148 EENSS 152 (860)
Q Consensus 148 ~~~~~ 152 (860)
..+.|
T Consensus 427 L~~~P 431 (1251)
T KOG0414|consen 427 LDRHP 431 (1251)
T ss_pred HhcCC
Confidence 77765
No 97
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=1 Score=53.30 Aligned_cols=165 Identities=14% Similarity=0.106 Sum_probs=109.0
Q ss_pred HHHHHhhcCCC-CHHHHhHHHHHhcC---CChhh-----hHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhcccccc
Q 002996 48 VNTFVKDSQDP-NPLIRALAVRTMGC---IRVDK-----ITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVE 117 (860)
Q Consensus 48 in~l~kDl~~~-n~~ir~lALr~l~~---i~~~e-----~~~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p~~~~ 117 (860)
.+.|..-|+.. +|..+--||.-||- +++++ .++.++|.+..+|.| .++-+---|+-|+..|+...|..+.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 35666667655 99999999999985 34444 347889999999999 7889999999999999999997543
Q ss_pred ---cccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhcccc--
Q 002996 118 ---DRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA-- 191 (860)
Q Consensus 118 ---~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~-- 191 (860)
+.+.++.+..-|.. .-.-|.=.++.+|..|.+..+..+++. ..+..-+..|.-++--.|-+.|-+.+..+..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A--G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA--GALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566666554432 334456688899999988877654432 2233333333334445677777777766643
Q ss_pred --CHHHHHHHHHHHhhhhcCCChHH
Q 002996 192 --DAREAENIVERVTPRLQHANCAV 214 (860)
Q Consensus 192 --~~~~~~~ll~~v~~~l~~~n~aV 214 (860)
+..-.-+.+..+.++|++.+.-+
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ 351 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKP 351 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchh
Confidence 22222233445567777765533
No 98
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.78 E-value=0.22 Score=60.24 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=137.8
Q ss_pred hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc-ccccc-ccHH-HHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002996 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVED-RGFL-ESLKDLISDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 75 ~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p-~~~~~-~~~~-~~l~~lL~D~d~~V~~~al~~l~~i~~~~ 151 (860)
-.++..-+.+.+...+.|+++-=|+.|+..+.+...-.+ +..+. .+.+ ..+.-.+.|.|..|++.|...|..|+...
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 345667777888889999999999999999999997655 22221 1222 23334567999999999999999999876
Q ss_pred CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH--HHHHHhhhccC
Q 002996 152 SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA--MILQQMELITS 229 (860)
Q Consensus 152 ~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a--~~~~~l~~~~~ 229 (860)
+..........+..++..+.+--+...-.++.++..+.... -..++.+.+...+++.|+.+..++ .+-.++....+
T Consensus 327 r~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 327 RPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred chhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 65555555666777888877766777777777777665432 345788888899999999988776 22233333321
Q ss_pred hHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChh
Q 002996 230 TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT 271 (860)
Q Consensus 230 ~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~ 271 (860)
....+.....+++.++... .++.++|-++++++.-+...+.+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 1112333445566677777 47899999999999998887653
No 99
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.70 E-value=1.7 Score=53.41 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=61.8
Q ss_pred cccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccH
Q 002996 304 DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY 381 (860)
Q Consensus 304 ~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~--~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~ 381 (860)
+.+=+.|+..|..|+.+.|..+|......|.-++.-.... .+..+..|.+-|.++.+.|...++..+.-++. ..-++
T Consensus 612 ~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik-~~ll~ 690 (1431)
T KOG1240|consen 612 EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK-LGLLR 690 (1431)
T ss_pred cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH-hcccc
Confidence 3334567888888998888888888888886555544332 34445555555666666777777766665553 23444
Q ss_pred HHHHHHHHHh-hccCCchHH--HHHHHHHHhh
Q 002996 382 ESIIATLCES-LDTLDEPEA--KASMIWIIGE 410 (860)
Q Consensus 382 ~~~i~~L~~~-l~~~~~~~~--~~~~~wilGE 410 (860)
+.++..+.+. +--+-+|+. +.+++-+|-+
T Consensus 691 K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 691 KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAA 722 (1431)
T ss_pred hHHHHHHHHhhhhheeCchHHHHHHHHHHHHH
Confidence 4444444332 122245664 4444444433
No 100
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.68 E-value=1.2 Score=51.60 Aligned_cols=143 Identities=21% Similarity=0.266 Sum_probs=91.3
Q ss_pred CCHHHHhHHHHHhcCC--ChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChh
Q 002996 58 PNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (860)
Q Consensus 58 ~n~~ir~lALr~l~~i--~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~ 135 (860)
.++...-||-.++.+. .-|++.+.-+..+..++.|.+.-||+.|+-.+..+++-+|+.+.. ..+.|.+||...++.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--vaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--VADVLVQLLQTDDPV 111 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--HHHHHHHHTT---HH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--HHHHHHHHHhcccHH
Confidence 3566777777777765 358889999999999999999999999999999999999999874 899999999877776
Q ss_pred HHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhc---cCChhHHHHHHHHHHhc-ccc-----C-HHHHHH-HHHHHh
Q 002996 136 VVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN---ECTEWGQVFILDALSRY-KAA-----D-AREAEN-IVERVT 204 (860)
Q Consensus 136 V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~---~~~~w~q~~il~~L~~~-~~~-----~-~~~~~~-ll~~v~ 204 (860)
.+..+=.+|.++...++. ..+.-|++.+. .-++-...++|++|... .+- . .+|.+. +++.+.
T Consensus 112 E~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ik 184 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIK 184 (556)
T ss_dssp HHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHH
Confidence 666555666666555542 24555555554 45666777788887532 211 1 134443 455666
Q ss_pred hhhcC
Q 002996 205 PRLQH 209 (860)
Q Consensus 205 ~~l~~ 209 (860)
..|+.
T Consensus 185 kvL~D 189 (556)
T PF05918_consen 185 KVLQD 189 (556)
T ss_dssp HHCTT
T ss_pred HHHHh
Confidence 66654
No 101
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=95.65 E-value=0.11 Score=51.96 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=73.6
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhH--HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT--EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~--~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (860)
.+.+.+-+.+++..+|-.|++.+..+-..-++ -..+|.+.-+..|+++++|++|...+..+++++|+.+.. .+.+-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~-~~~~gi 88 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES-RYSEGI 88 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH-HHHHHH
Confidence 35567778899999999999999976544444 245677888999999999999999999999999998864 344444
Q ss_pred HH-------hhcCCChhH---HHHHHHHHHHHhhc
Q 002996 126 KD-------LISDNNPMV---VANAVAALAEIEEN 150 (860)
Q Consensus 126 ~~-------lL~D~d~~V---~~~al~~l~~i~~~ 150 (860)
+. +-.|..... ..+.+..++++...
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~ 123 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS 123 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHhc
Confidence 32 222322222 55666677777664
No 102
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.46 E-value=0.015 Score=45.37 Aligned_cols=53 Identities=32% Similarity=0.427 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002996 95 PYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEI 147 (860)
Q Consensus 95 ~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al~~l~~i 147 (860)
|.||+.|+.++..+....++.... ...++.|..+|+|+++.|..+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 679999999999877666665542 24778888999999999999999888643
No 103
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.11 E-value=1 Score=48.84 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=101.1
Q ss_pred HHHHHHHH-HhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Q 002996 308 DQVLLEFK-EYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 386 (860)
Q Consensus 308 ~~Iv~eL~-~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~ 386 (860)
..+++.|. .-++..|..+|+.+++.+|.++.-....+..++..++..++.+.+.+.-.++..+.|++..|+-.
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~------ 98 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID------ 98 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch------
Confidence 37788876 55788899999999999999998777888889999999987666667777777888887765411
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 002996 387 TLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 466 (860)
Q Consensus 387 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~ 466 (860)
.++....+. .-.....+++.+.+-+..+++++|..+...++||+...--.+....+..++-.
T Consensus 99 ----~~~~~~~~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 99 ----IFDSESDND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL 160 (298)
T ss_pred ----hccchhccC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 111111111 11124455666666566678899999999999998865322113445554333
Q ss_pred cc--cCCCChHHHHHHHHHHHHh
Q 002996 467 AT--VETDNPDLRDRAYIYWRLL 487 (860)
Q Consensus 467 ~~--~~s~~~evrdRA~~y~~ll 487 (860)
.. ....|..+||==..+....
T Consensus 161 yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 161 YFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred HcCcccCCcHHHHHHHHHHHHHH
Confidence 21 1234566776444444443
No 104
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=3.2 Score=53.54 Aligned_cols=145 Identities=21% Similarity=0.215 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC----hhhhHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhcccccc
Q 002996 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----VDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVE 117 (860)
Q Consensus 43 l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~----~~e~~~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p~~~~ 117 (860)
+--+..-.+..++..+||..|+.|-.+++.+. .+-.+-.+.....+-+.+ .+|+-|---.++++.++|.......
T Consensus 873 v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 873 VRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 44455556778999999999999998888763 222222333333444444 7777777777888888887666665
Q ss_pred cccHHH---HHHHhhcCCC-hhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 002996 118 DRGFLE---SLKDLISDNN-PMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRY 188 (860)
Q Consensus 118 ~~~~~~---~l~~lL~D~d-~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~ 188 (860)
.+.+.. .+..+-.|++ |.|...++.++..|.....+-.+.+..+.+.-.+..| -..|...+.+.+...+.
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lL-ls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLL-LSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHc-CCCCcchhhhhhhhccc
Confidence 444444 6666667865 4888999999998877654444444433333333332 23344555455544443
No 105
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.93 E-value=6 Score=41.80 Aligned_cols=232 Identities=13% Similarity=0.205 Sum_probs=116.5
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHHhhcc-ccccccc---HHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996 85 PLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRG---FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (860)
Q Consensus 85 ~v~~~l~d~~~~VRk~A~~~l~kl~~~~p-~~~~~~~---~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~ 160 (860)
.+...|++.++-+|.+|..++..+...-| +.+...+ +.+-..+.| .|+.++..++..+..+..... ...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~~-----~~~ 75 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMKN-----FSP 75 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCcC-----CCh
Confidence 35677889999999999999998887655 4343211 223333344 345555555666666653321 111
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhccccC--HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHH
Q 002996 161 HTLSKLLTALNECTEWGQVFILDALSRYKAAD--AREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCK 238 (860)
Q Consensus 161 ~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~--~~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~ 238 (860)
.....+++.+- ..+..+. ......+++.+...+.+...+ .+.+..
T Consensus 76 ~~~~~i~~~l~--------------~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~-------------------l~~~~~ 122 (262)
T PF14500_consen 76 ESAVKILRSLF--------------QNVDVQSLPQSTRYAVYQLLDSLLENHREA-------------------LQSMGD 122 (262)
T ss_pred hhHHHHHHHHH--------------HhCChhhhhHHHHHHHHHHHHHHHHHhHHH-------------------HHhchh
Confidence 12233332221 1111000 011122222222222221111 111111
Q ss_pred HhhhHHHhhcC--CChhHHHHHHHHHHHHHhhCh------h---hhhccceEEEe-ccCCcHHHHHHHHH--HHHHhcC-
Q 002996 239 KMAPPLVTLLS--AEPEIQYVALRNINLIVQRRP------T---ILAHEIKVFFC-KYNDPIYVKMEKLE--IMIKLAS- 303 (860)
Q Consensus 239 ~~~~~L~~lls--~~~niry~aL~~l~~l~~~~p------~---~~~~~~~~~~~-l~~d~~~Ik~~~L~--lL~~l~~- 303 (860)
..+..++.+.. +||.---++.+.+..+.+..+ + ++.-|..|-|- -.+||..|.+.-|. +.-.++.
T Consensus 123 ~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~ 202 (262)
T PF14500_consen 123 DFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST 202 (262)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc
Confidence 12223444442 567655566666666666554 1 22334444333 44666555554443 3333443
Q ss_pred cccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHH
Q 002996 304 DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIK 356 (860)
Q Consensus 304 ~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-~~~~v~~ll~ll~ 356 (860)
+.=.+..+.-|++=+.+.....|.++.+.+..|+.+|+.. ...++..+.+-|+
T Consensus 203 ~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 203 PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 3334566777777777777889999999999999998653 3455555554443
No 106
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.57 E-value=1.4 Score=50.19 Aligned_cols=225 Identities=16% Similarity=0.244 Sum_probs=107.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHH----HHHHHHHh-hcCCCCHHHHhHHHHHhcCCChh----hhHHHHHHHHHhhh-cCC
Q 002996 24 ELKKLVYLYLINYAKSQPDLAI----LAVNTFVK-DSQDPNPLIRALAVRTMGCIRVD----KITEYLCDPLQRCL-KDD 93 (860)
Q Consensus 24 ~~Krl~Yl~l~~~~~~~~el~~----L~in~l~k-Dl~~~n~~ir~lALr~l~~i~~~----e~~~~l~~~v~~~l-~d~ 93 (860)
..+++++++...+..-+++..+ -..+.+.+ -+...++..|-.|++.+|.+.+. +..+.+...+...+ ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 4667777777766655544321 12233333 33445688888888888876543 22333334443333 334
Q ss_pred ChHHHHHHHHHHH-----HHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchh-ccHHHHHHHH
Q 002996 94 DPYVRKTAAICVA-----KLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLL 167 (860)
Q Consensus 94 ~~~VRk~A~~~l~-----kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~-~~~~~~~~Ll 167 (860)
.+-.|..++..+. -+.|.+|.... |.+.+.++|.|.. +-..|..++.-+..+.+ .+.. -.+..++-|.
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~---~~~~L~~lL~~~~--~g~~aA~~f~il~~d~~-~~l~~~~~a~vklLy 316 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLATE---LLDKLLELLSSPE--LGQQAAKAFGILLSDSD-DVLNKENHANVKLLY 316 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchHHH---HHHHHHHHhCChh--hHHHHHHHHhhHhcCcH-HhcCccccchhhhHH
Confidence 4444555554442 33455665443 7777888887733 22222233333322211 0100 0011111111
Q ss_pred HHhccCChhHHHHHH-HHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHh
Q 002996 168 TALNECTEWGQVFIL-DALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVT 246 (860)
Q Consensus 168 ~~l~~~~~w~q~~il-~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ 246 (860)
+. |.-..++ .++..|...+.+.....+..+...++|... +....-...+.|.|+.
T Consensus 317 kQ------R~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~------------------~vl~~~l~~LlPLLlq 372 (415)
T PF12460_consen 317 KQ------RFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK------------------SVLLPELPTLLPLLLQ 372 (415)
T ss_pred hH------HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH------------------HHHHHHHHHHHHHHHH
Confidence 10 1111111 112222222211112222222222222222 2222223445666666
Q ss_pred hcC-CChhHHHHHHHHHHHHHhhChhhhhccce
Q 002996 247 LLS-AEPEIQYVALRNINLIVQRRPTILAHEIK 278 (860)
Q Consensus 247 lls-~~~niry~aL~~l~~l~~~~p~~~~~~~~ 278 (860)
-|+ .++++++.+|+++..++...|+++..|+.
T Consensus 373 sL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 373 SLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 564 78899999999999999999999988864
No 107
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.56 E-value=0.14 Score=61.06 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=76.0
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 002996 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (860)
....+.+..+..+...+-++|++||+++.+..+..+.+.+. .-...++++|..|+.|+-++-..+|+.+. +.+.
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-----~~l~ 520 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQ-----EVLL 520 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHH-----HHHH
Confidence 34445555566778889999999999999999999888776 33457889999999999999888998765 5566
Q ss_pred HhhcC--CChhHHHHHHHHHHHHh
Q 002996 127 DLISD--NNPMVVANAVAALAEIE 148 (860)
Q Consensus 127 ~lL~D--~d~~V~~~al~~l~~i~ 148 (860)
.++.| .++.|..+|+.+|....
T Consensus 521 ~i~~n~~e~~EvRiaA~~~lm~t~ 544 (574)
T smart00638 521 PIYLNRAEPPEVRMAAVLVLMETK 544 (574)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcC
Confidence 66654 67899999988887754
No 108
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=7.1 Score=48.33 Aligned_cols=212 Identities=16% Similarity=0.159 Sum_probs=117.1
Q ss_pred CCCcccchHHHhHhccCCCcchHHHHHHHHHH------hcCCCCcHHHHHHHHHH-hhcCCCCHHHHhHHHHHhcCCC--
Q 002996 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLIN------YAKSQPDLAILAVNTFV-KDSQDPNPLIRALAVRTMGCIR-- 74 (860)
Q Consensus 4 G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~------~~~~~~el~~L~in~l~-kDl~~~n~~ir~lALr~l~~i~-- 74 (860)
+.|+...+.+.+...++..- ....-..+++. ++...++-.+=..+++. .+.++.++.+|--|-|.|..+.
T Consensus 606 ~~dv~~~l~~s~~e~as~~~-~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~ 684 (1176)
T KOG1248|consen 606 PTDVVGSLKDSAGELASDLD-ESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS 684 (1176)
T ss_pred cHHHHHHHHHHHHhHhccch-hhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC
Confidence 45666677777765544321 22222222221 23334443333334444 3445568888887776665443
Q ss_pred ------hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc----cccccccHHHHHHHhhcCCChhHHHHHHHHH
Q 002996 75 ------VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (860)
Q Consensus 75 ------~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p----~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l 144 (860)
...-++++...+.+.+.+.+.+.|+.++-|+..+|+..| +.+.. .++.+.=+++|.|..-..+|+.+|
T Consensus 685 ~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~EvIL~~Ke~n~~aR~~Af~lL 762 (1176)
T KOG1248|consen 685 PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEVILSLKEVNVKARRNAFALL 762 (1176)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHHHHhcccccHHHHhhHHHHH
Confidence 234556777777777788999999999999999999998 33331 233333334777878888999999
Q ss_pred HHHh--hcCCCCchhccHHHHHHHHHHhcc----CChhH----HHHHHHHHHhccc-cCHHHHHHHHHHHhhhhcCCChH
Q 002996 145 AEIE--ENSSRPIFEITSHTLSKLLTALNE----CTEWG----QVFILDALSRYKA-ADAREAENIVERVTPRLQHANCA 213 (860)
Q Consensus 145 ~~i~--~~~~~~~~~~~~~~~~~Ll~~l~~----~~~w~----q~~il~~L~~~~~-~~~~~~~~ll~~v~~~l~~~n~a 213 (860)
..|. ...-...-+-....+...+..+.. -..-. .+.+=.++..+.. -+.+....+++.|.-.|.+.++.
T Consensus 763 ~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sre 842 (1176)
T KOG1248|consen 763 VFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSRE 842 (1176)
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHH
Confidence 9988 221100000011123333333211 11111 1112222333322 23445577888888888888887
Q ss_pred HHHHH
Q 002996 214 VVLSA 218 (860)
Q Consensus 214 Vv~~a 218 (860)
|+-+|
T Consensus 843 I~kaA 847 (1176)
T KOG1248|consen 843 IAKAA 847 (1176)
T ss_pred HHHHH
Confidence 77766
No 109
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.97 E-value=14 Score=42.05 Aligned_cols=180 Identities=15% Similarity=0.212 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHH-HhhhhhhHHH---HHH-HHHHHHHhC
Q 002996 306 NIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERA--AERCISVLLELI-KIKVNYVVQE---AII-VIKDIFRRY 377 (860)
Q Consensus 306 Nv~~Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~~~~--~~~~v~~ll~ll-~~~~~~v~~e---~i~-~l~~i~~~~ 377 (860)
+...+++++.+.+... +...+..+.+.++.++.|++.. .+..++.+..-+ .......... +|. ..+-++.++
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 6667999999887654 4555666778899999998654 344444444444 1111222222 222 345555555
Q ss_pred cccHHHHHHHHHHhhccCCchH-HHHHHHHHHhhcccccC---C-----------HHHHHHHHHhhCCCCcHHHHHHHHH
Q 002996 378 PNTYESIIATLCESLDTLDEPE-AKASMIWIIGEYAERID---N-----------ADELLESFLESFPEEPAQVQLQLLT 442 (860)
Q Consensus 378 p~~~~~~i~~L~~~l~~~~~~~-~~~~~~wilGEy~~~i~---~-----------~~~~l~~~~~~~~~e~~~v~~~iLt 442 (860)
.......+.+|++.+++-+-.. +-.+.--+++++.+... + -..++..+++.|...+.+.|...|+
T Consensus 266 ~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 266 HPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred CchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 4455667788888886522111 22334445566433221 1 1245566777888777789999999
Q ss_pred HHHHHhhcCCCCC----hHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002996 443 ATVKLFLKKPTEG----PQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 487 (860)
Q Consensus 443 a~~Kl~~~~p~~~----~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll 487 (860)
|+.-+....|.+- ...++.-+++. . +..|.+++--+.+-...+
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqs-L-~~~~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQS-L-SLPDADVLLSSLETLKMI 392 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHH
Confidence 9999999888631 23344444553 3 567788877776655444
No 110
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.70 E-value=2.8 Score=45.31 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=81.4
Q ss_pred HHHHHHHHhhcCCCCHHHHhHHHHHhcCC--ChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc-ccccc---
Q 002996 45 ILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVED--- 118 (860)
Q Consensus 45 ~L~in~l~kDl~~~n~~ir~lALr~l~~i--~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p-~~~~~--- 118 (860)
-+.-+-+..-++++++.+|..|+++||-. -+.+++..-++-+.+.+...++.||-+|+-++.-+...++ +.+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 55666777899999999999999999864 4788888888888888876799999999999999887754 22221
Q ss_pred -------ccHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 002996 119 -------RGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (860)
Q Consensus 119 -------~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~ 149 (860)
..+.+.+.+.|.+.++.+...|+-.+..+.-
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 2356677788888888888877776666543
No 111
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.68 E-value=0.49 Score=41.23 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=38.3
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHhhcc-cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 86 LQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 86 v~~~l~d~~~~VRk~A~~~l~kl~~~~p-~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
+..-+.|+.+.||--|+.-+.++.+... ...........+...|.|.|+-|-.+|+..|..++...|
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 3344455555566666666666655444 222222345555666677777777777777777665544
No 112
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.45 E-value=0.21 Score=44.04 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCC
Q 002996 97 VRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECT 174 (860)
Q Consensus 97 VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~ 174 (860)
-||-+++|+..+-.--++.+.+ ..+++.+...+.|.|+.|...|+-+|+.|.+...+..+......+..|++.+.|.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3888888888875544433332 14667777888999999999999999999876544333333444444444444443
Q ss_pred h
Q 002996 175 E 175 (860)
Q Consensus 175 ~ 175 (860)
+
T Consensus 82 ~ 82 (97)
T PF12755_consen 82 E 82 (97)
T ss_pred h
Confidence 3
No 113
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.86 E-value=12 Score=45.20 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=69.4
Q ss_pred HHHhHHHHHhcCCC----hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc-cccHHHHHHHhhcCCChh
Q 002996 61 LIRALAVRTMGCIR----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-DRGFLESLKDLISDNNPM 135 (860)
Q Consensus 61 ~ir~lALr~l~~i~----~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~-~~~~~~~l~~lL~D~d~~ 135 (860)
-++-.|++.+-++- ...+.+...--++.+..|.-.-|||+++-++.++....|-++. ...|...+..+++|.+..
T Consensus 592 ~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~ 671 (1529)
T KOG0413|consen 592 PVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESD 671 (1529)
T ss_pred ccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHH
Confidence 44555555555442 3456677777788888999999999999999999999998763 236999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 002996 136 VVANAVAALAEIE 148 (860)
Q Consensus 136 V~~~al~~l~~i~ 148 (860)
|.-.|..++....
T Consensus 672 v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 672 VTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877754
No 114
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.83 E-value=33 Score=44.02 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHh--cCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHH---hhhhh
Q 002996 288 IYVKMEKLEIMIKL--ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL-ERAAERCISVLLELIK---IKVNY 361 (860)
Q Consensus 288 ~~Ik~~~L~lL~~l--~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~-~~~~~~~v~~ll~ll~---~~~~~ 361 (860)
.+++..--++++.| +.++-+-.|+.+|..-+...+.++|.+++.-+|.+-... ....+.|-++...+|. +....
T Consensus 236 ~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 45666666777766 455556667888887788888899999999998865432 2222334444444443 33345
Q ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhh--cccc-cCCHHHHHHHHHhhCCCCcHHHHH
Q 002996 362 VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGE--YAER-IDNADELLESFLESFPEEPAQVQL 438 (860)
Q Consensus 362 v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGE--y~~~-i~~~~~~l~~~~~~~~~e~~~v~~ 438 (860)
|.-+++....+++.++|+..+.....+.-...+. +++.+....-+++. .... ....++++..+.++..+-...||.
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~ 394 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRK 394 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHH
Confidence 7778888999999999987665444333222222 23322111111111 1110 011223788888888888999999
Q ss_pred HHHHHHHHHhhcC---CC-------------------------CChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002996 439 QLLTATVKLFLKK---PT-------------------------EGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 489 (860)
Q Consensus 439 ~iLta~~Kl~~~~---p~-------------------------~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~ 489 (860)
+.+..++++|.+. .. ++.+..+.++|.... -..+.+.|+|-.-.+.++..
T Consensus 395 ~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L-~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 395 QAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYL-VPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhc
Confidence 9999999999851 10 012345667777654 34678999999888888874
No 115
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.60 E-value=0.35 Score=42.16 Aligned_cols=68 Identities=25% Similarity=0.256 Sum_probs=57.8
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCCh-h----hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV-D----KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL 115 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~~-~----e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~ 115 (860)
-+...++++||.+-+||-||..|.++.. . .-.+.+..-....|.|.++||==.|+-|+.-+...+|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 3567889999999999999999998642 1 234677788889999999999999999999999999974
No 116
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=46 Score=42.75 Aligned_cols=292 Identities=16% Similarity=0.159 Sum_probs=164.8
Q ss_pred cCCCCHHHH---hHHHHHhcCCCh----hhhHHHHHHHHHhhhcCCChHHHHHH---HHHHHHHHhhcccccc---cccH
Q 002996 55 SQDPNPLIR---ALAVRTMGCIRV----DKITEYLCDPLQRCLKDDDPYVRKTA---AICVAKLYDINAELVE---DRGF 121 (860)
Q Consensus 55 l~~~n~~ir---~lALr~l~~i~~----~e~~~~l~~~v~~~l~d~~~~VRk~A---~~~l~kl~~~~p~~~~---~~~~ 121 (860)
|.++.=-+| |+||+-|=+=+. .|+++.+-..+.+...|-..-||+.| +-++.|+.-..-+... -..+
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 344443444 677777765443 34446666777888888888899865 4455555533222221 1235
Q ss_pred HHHHHHhhcC-----CChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH
Q 002996 122 LESLKDLISD-----NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (860)
Q Consensus 122 ~~~l~~lL~D-----~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~ 196 (860)
++.+.-.|-| +-+.|..-++..+..+.+..++.+...+++.++-|++......|.. |..|..-. +..+
T Consensus 1128 l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~v----LnYls~r~--~~~e- 1200 (1702)
T KOG0915|consen 1128 LDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQV----LNYLSLRL--INIE- 1200 (1702)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHH----HHHHHHhh--hhhH-
Confidence 5555444433 3367788889999999998877666666666666666665544432 22222100 1111
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhcCC--ChhHHHHHHHHHHHHHhhChhhhh
Q 002996 197 ENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSA--EPEIQYVALRNINLIVQRRPTILA 274 (860)
Q Consensus 197 ~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls~--~~niry~aL~~l~~l~~~~p~~~~ 274 (860)
...++....-...++|+ |++ +-.|++++ +. +.++.+.|.+..++.+ .-+.|--+-.-+..|+++.+.-..
T Consensus 1201 ~ealDt~R~s~aksspm--meT-i~~ci~~i-D~----~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1201 TEALDTLRASAAKSSPM--MET-INKCINYI-DI----SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred HHHHHHHHHhhhcCCcH--HHH-HHHHHHhh-hH----HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence 12222222222234444 666 23345443 22 3344556667777632 446677777777778877665444
Q ss_pred cc----ceEEE-eccCCcHHHHHH---HHHHHHHhcCcccHHHHHHHHHH-hhhhccHHHHHHHHHHHHHHHHhhhhhHH
Q 002996 275 HE----IKVFF-CKYNDPIYVKME---KLEIMIKLASDRNIDQVLLEFKE-YATEVDVDFVRKAVRAIGRCAIKLERAAE 345 (860)
Q Consensus 275 ~~----~~~~~-~l~~d~~~Ik~~---~L~lL~~l~~~~Nv~~Iv~eL~~-y~~~~d~~~~~~~i~~I~~la~k~~~~~~ 345 (860)
++ ++..+ -..|...++|+. |.-.|.+...++-.+..+.++.. |+.+.+. .+..++..|..++.......+
T Consensus 1273 P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lk 1351 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLK 1351 (1702)
T ss_pred cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHH
Confidence 43 23222 244566777764 45567777888888999998874 4443333 224444444445655555666
Q ss_pred HHHHHHHHHHHhhhhhh
Q 002996 346 RCISVLLELIKIKVNYV 362 (860)
Q Consensus 346 ~~v~~ll~ll~~~~~~v 362 (860)
-+.+.++.++-.+-.++
T Consensus 1352 n~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1352 NYASAILPLIFLAMHEE 1368 (1702)
T ss_pred hhHHHHHHHHHHHHhHH
Confidence 77777777766655444
No 117
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=4.2 Score=47.35 Aligned_cols=140 Identities=24% Similarity=0.247 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcC---CChhhh--------HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh
Q 002996 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGC---IRVDKI--------TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (860)
Q Consensus 43 l~~L~in~l~kDl~~~n~~ir~lALr~l~~---i~~~e~--------~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~ 111 (860)
+-.|.-..|-+-|+-+|..||+.|+..+-. |+.|+. ++.-...+.++|.|.-|.||..|+.++.|++..
T Consensus 171 l~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~ 250 (1005)
T KOG1949|consen 171 LYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK 250 (1005)
T ss_pred HHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 345556677899999999999999887765 344443 455567788999999999999999999999887
Q ss_pred cccccccccHHHHHHHh----hcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHh----ccCChhHHHHHHH
Q 002996 112 NAELVEDRGFLESLKDL----ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL----NECTEWGQVFILD 183 (860)
Q Consensus 112 ~p~~~~~~~~~~~l~~l----L~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l----~~~~~w~q~~il~ 183 (860)
.=+.++..-+++.+.+. -.|+...|..+.+.-|.+|..+. ..|+.+..++..+ .|.++-..+...+
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np------~sh~~le~~Lpal~~~l~D~se~VRvA~vd 324 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP------LSHPLLEQLLPALRYSLHDNSEKVRVAFVD 324 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc------cchhHHHHHHHhcchhhhccchhHHHHHHH
Confidence 66666543344444433 34666788888888888876542 2234444444443 3445555555555
Q ss_pred HHHhc
Q 002996 184 ALSRY 188 (860)
Q Consensus 184 ~L~~~ 188 (860)
+|.+.
T Consensus 325 ~ll~i 329 (1005)
T KOG1949|consen 325 MLLKI 329 (1005)
T ss_pred HHHHH
Confidence 55443
No 118
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.36 E-value=1.6 Score=50.63 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=55.1
Q ss_pred ChhhhH-HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh-ccccccc------ccHHHHHHHhhcCCChhHHHHHHHHHH
Q 002996 74 RVDKIT-EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVED------RGFLESLKDLISDNNPMVVANAVAALA 145 (860)
Q Consensus 74 ~~~e~~-~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~-~p~~~~~------~~~~~~l~~lL~D~d~~V~~~al~~l~ 145 (860)
++.+|+ +-.-+.+.+.|+-.|..||..|++-+.-+|-+ +||.-.+ +.-...+.+||.|.-|+|.+.|+--++
T Consensus 166 gVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~ 245 (1005)
T KOG1949|consen 166 GVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVC 245 (1005)
T ss_pred hHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 456666 44456678999999999999999999998864 6765211 123467789999999999998876665
Q ss_pred HH
Q 002996 146 EI 147 (860)
Q Consensus 146 ~i 147 (860)
.+
T Consensus 246 k~ 247 (1005)
T KOG1949|consen 246 KI 247 (1005)
T ss_pred HH
Confidence 55
No 119
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.22 E-value=24 Score=38.32 Aligned_cols=186 Identities=18% Similarity=0.210 Sum_probs=98.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhh--ccccccc--ccHHHHHHHhhcCCC--hhHHHHHHHHHHHHhhcCCCCch
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDI--NAELVED--RGFLESLKDLISDNN--PMVVANAVAALAEIEENSSRPIF 156 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~--~p~~~~~--~~~~~~l~~lL~D~d--~~V~~~al~~l~~i~~~~~~~~~ 156 (860)
+......+.+++.-.|..|..++.+++.. .++.+.+ ..+.+.+.+.++-.. ....+.-+..|.-|.-..+...-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33445566788899999999999999864 3454432 134555666665433 33333222233333211111112
Q ss_pred hccHHHHHHHHHHhccCCh--hHHHH---HHHHHHhccccCHHHHHHHHHHHh-----hhhcCC----------ChHHHH
Q 002996 157 EITSHTLSKLLTALNECTE--WGQVF---ILDALSRYKAADAREAENIVERVT-----PRLQHA----------NCAVVL 216 (860)
Q Consensus 157 ~~~~~~~~~Ll~~l~~~~~--w~q~~---il~~L~~~~~~~~~~~~~ll~~v~-----~~l~~~----------n~aVv~ 216 (860)
.+.....+.|...+.+.+. =.... .|-++..++-.+.++...+++.+. ..++.. +++|+-
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 2333334444455555432 22233 445555556667777774444332 112211 234555
Q ss_pred HHHHHHH-hhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhh
Q 002996 217 SAMILQQ-MELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR 268 (860)
Q Consensus 217 ~a~~~~~-l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~ 268 (860)
+|+--++ +-...+...+........+.|..+| +.+.++|-.|=++|..|...
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5521122 2122233334455566778888888 57899999999999988654
No 120
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.94 E-value=0.28 Score=59.14 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHH
Q 002996 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFL 122 (860)
Q Consensus 43 l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~ 122 (860)
+.-...+.+.+.....+..-+-++|++||+++.++.++.+.+.+..-- +.+..+|..|+.|+.++-..+|+.+.
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~----- 560 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVR----- 560 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHH-----
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHH-----
Confidence 344444555655566788999999999999999988877654443322 45899999999999999888887544
Q ss_pred HHHHHhhcC--CChhHHHHHHHHHHHHh
Q 002996 123 ESLKDLISD--NNPMVVANAVAALAEIE 148 (860)
Q Consensus 123 ~~l~~lL~D--~d~~V~~~al~~l~~i~ 148 (860)
+.+..++.| .++.|..+|+.+|....
T Consensus 561 ~~l~~I~~n~~e~~EvRiaA~~~lm~~~ 588 (618)
T PF01347_consen 561 EILLPIFMNTTEDPEVRIAAYLILMRCN 588 (618)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHHHT-
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcC
Confidence 666777655 57889999988887753
No 121
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=52 Score=41.23 Aligned_cols=205 Identities=15% Similarity=0.209 Sum_probs=107.3
Q ss_pred ChhHHHHHHHHHHhccccC-HHHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccC-hHHHHHHHHHhhhHHHhhc-C
Q 002996 174 TEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSA-MILQQMELITS-TDVVRNLCKKMAPPLVTLL-S 249 (860)
Q Consensus 174 ~~w~q~~il~~L~~~~~~~-~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~-~~~~~~~~~~~~~~L~~ll-s 249 (860)
..+.+..+|+++....+-. .+....+........+++++.+.--+ .++.-+-...+ .....+....+-+.|..-+ +
T Consensus 629 ~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs 708 (1176)
T KOG1248|consen 629 ASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS 708 (1176)
T ss_pred hhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc
Confidence 4567777788777665533 23344444333333455566665555 22222211101 1112222222333333322 3
Q ss_pred CChhHHHHHHHHHHHHHhhCh----hhhhccce-EEEeccCCcHHHHHHHHHHHHHhcC---------cccHHHHHHHHH
Q 002996 250 AEPEIQYVALRNINLIVQRRP----TILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLAS---------DRNIDQVLLEFK 315 (860)
Q Consensus 250 ~~~niry~aL~~l~~l~~~~p----~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~---------~~Nv~~Iv~eL~ 315 (860)
...-.|+-.|.++..|...++ +++...+. ++.+..+-+.+-|+-|.++|+.|+. +. +..++++++
T Consensus 709 ~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl 787 (1176)
T KOG1248|consen 709 SSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFL 787 (1176)
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHH
Confidence 455688899999999988887 33333333 4445567778999999999999982 22 234555544
Q ss_pred Hhhhh--c-cHHH-HHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcc
Q 002996 316 EYATE--V-DVDF-VRKAVRAIGRCAIKLER-----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN 379 (860)
Q Consensus 316 ~y~~~--~-d~~~-~~~~i~~I~~la~k~~~-----~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~ 379 (860)
.-+.. + |... +...|.+++.+...+.. ....+++.+.-+|..+...+...+|..++-++...|+
T Consensus 788 ~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 788 SIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 32221 1 2222 22226666665555432 2334455555555555556666666666666655554
No 122
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=90.77 E-value=29 Score=38.69 Aligned_cols=207 Identities=15% Similarity=0.225 Sum_probs=132.7
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhChh---hhhccceEEE--eccCCc--HHHHHHHHHHHHHhcCccc-H----HHHHHH
Q 002996 246 TLLSAEPEIQYVALRNINLIVQRRPT---ILAHEIKVFF--CKYNDP--IYVKMEKLEIMIKLASDRN-I----DQVLLE 313 (860)
Q Consensus 246 ~lls~~~niry~aL~~l~~l~~~~p~---~~~~~~~~~~--~l~~d~--~~Ik~~~L~lL~~l~~~~N-v----~~Iv~e 313 (860)
.+|+.+.++|-.++|.+..+...... +.+-|+.+|. |+..|. ..=|..||.+..++.+-.+ . ..|++-
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 35676699999999999877764432 2344555443 343332 3457889998888776532 2 468888
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHH-----HH
Q 002996 314 FKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC--ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESI-----IA 386 (860)
Q Consensus 314 L~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~--v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~-----i~ 386 (860)
+..-+.+.++.++.-++..++.++...|.-.-+| +.++++.+..+.-.+.+-++..+..++ +.|+.+.++ ++
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLE 191 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHH
Confidence 8888888899999999999999999887654443 666777666532234444555666666 457666543 23
Q ss_pred HHHHhhccC------Cch---H---HHHHHHHHHhhcccccC---CHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcC
Q 002996 387 TLCESLDTL------DEP---E---AKASMIWIIGEYAERID---NADELLESFLESFPEEPAQVQLQLLTATVKLFLKK 451 (860)
Q Consensus 387 ~L~~~l~~~------~~~---~---~~~~~~wilGEy~~~i~---~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~ 451 (860)
.++..+-+. .+. . ++.+++-++--+...+. +...-++.+++.+....+++|-++|..+..++.-.
T Consensus 192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 333322222 111 1 23355566666655442 22256777888777778889999999999988755
Q ss_pred CC
Q 002996 452 PT 453 (860)
Q Consensus 452 p~ 453 (860)
+.
T Consensus 272 ~p 273 (371)
T PF14664_consen 272 PP 273 (371)
T ss_pred CC
Confidence 43
No 123
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.67 E-value=30 Score=42.12 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=85.7
Q ss_pred HHHHhcCCC-CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC----hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 002996 32 YLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVA 106 (860)
Q Consensus 32 ~l~~~~~~~-~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~----~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~ 106 (860)
+...|.... +.+-.-.-+..+.=++|.+|.+|-.+=+-++.+. .......+.+....+..|....||=.|.-++.
T Consensus 222 f~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~ 301 (759)
T KOG0211|consen 222 FGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLV 301 (759)
T ss_pred hHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHH
Confidence 334444444 3344455677888889999999999999888876 34455788888899999988889999998888
Q ss_pred HHHhhcccc-cccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 107 KLYDINAEL-VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 107 kl~~~~p~~-~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
.+.....+. =....+.+.+.+..+|.+..|.........++...
T Consensus 302 ~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~ 346 (759)
T KOG0211|consen 302 SLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSA 346 (759)
T ss_pred HHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHH
Confidence 887653322 11125789999999999888877766666665543
No 124
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=2.3 Score=45.89 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=83.3
Q ss_pred ccCCCcchHHHHHHHHHHhcCCCCcHHHHHHH-----HHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHH-----HHH
Q 002996 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVN-----TFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYL-----CDP 85 (860)
Q Consensus 18 ~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in-----~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l-----~~~ 85 (860)
-++.+.+.|--+.=-+..+.+.- |-|...++ .+..=++++++.+|.+|.+++|... +|...+.+ ...
T Consensus 92 ~~s~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 34556666655554444444432 21222221 1233678999999999999999874 45444433 344
Q ss_pred HHhhhc-CCChHHHHHHHHHHHHHHhhccccccc----ccHHHHHHHhhcC--CChhHHHHHHHHHHHHhhcC
Q 002996 86 LQRCLK-DDDPYVRKTAAICVAKLYDINAELVED----RGFLESLKDLISD--NNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 86 v~~~l~-d~~~~VRk~A~~~l~kl~~~~p~~~~~----~~~~~~l~~lL~D--~d~~V~~~al~~l~~i~~~~ 151 (860)
+.+++. +.+-.||++|..|+.-+.|.+|-.... .+ ...|.+.|.+ .+.....-++.++..+.+.+
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 555555 477789999999999999998865442 23 4677888877 45555566666666665543
No 125
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=90.34 E-value=0.53 Score=48.10 Aligned_cols=131 Identities=19% Similarity=0.188 Sum_probs=89.0
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC--HHHHhHHHHHhcCCChhhhHHHHHHHHHhhh
Q 002996 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPN--PLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (860)
Q Consensus 13 ~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n--~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l 90 (860)
.+-.++++..++.|-++++++....+...+- .+..+.+-+.+-+ ..+=++|-+.++.+.... +.+.+.+.+-+
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~ 129 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWA 129 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence 3445788888889888888887655443321 3445555554433 244455566666553221 44566678889
Q ss_pred cCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 91 ~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
.|.++++||.|+.++++.++. +..+ .+.+.+..++.|.+..|..+.--+|.++...++
T Consensus 130 ~s~~~w~rR~~~v~~~~~~~~--~~~~--~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 130 KSDNEWVRRAAIVMLLRYIRK--EDFD--ELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HCSSHHHHHHHHHCTTTHGGG--CHHH--HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred hCCcHHHHHHHHHHHHHHHHh--cCHH--HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 999999999999999887776 2222 366777888899999999998889999987765
No 126
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.09 E-value=2 Score=51.98 Aligned_cols=136 Identities=28% Similarity=0.332 Sum_probs=95.9
Q ss_pred chHHHhHhccCCCcchHHH-HHHHHHHhcCCCCcHHHHHHHHHHhh---------c---CCCCHHHHhHHHHHhcCCCh-
Q 002996 10 LFTDVVNCMQTENLELKKL-VYLYLINYAKSQPDLAILAVNTFVKD---------S---QDPNPLIRALAVRTMGCIRV- 75 (860)
Q Consensus 10 ~f~~vi~l~~s~~~~~Krl-~Yl~l~~~~~~~~el~~L~in~l~kD---------l---~~~n~~ir~lALr~l~~i~~- 75 (860)
.||.|+||++|+-.++|-+ +++-..+++--.+=.+ -|.|| | +.-++.-|++|-=.|+.|..
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~-----dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA-----DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH-----HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 6999999999999999976 6776666654322111 23344 2 22346888998888887642
Q ss_pred ----hhhH--HHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHhhcCCChhHHHHHHHHHH
Q 002996 76 ----DKIT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALA 145 (860)
Q Consensus 76 ----~e~~--~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~D~d~~V~~~al~~l~ 145 (860)
.+-+ ..++.--...+.| +.|..|.-.++|+.+|+.-+++.- .+..-.++|..+|.|.-|.|.++|+-||-
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 1111 2333333455556 589999999999999999877531 12356789999999999999999999998
Q ss_pred HHhhc
Q 002996 146 EIEEN 150 (860)
Q Consensus 146 ~i~~~ 150 (860)
.....
T Consensus 668 tfl~~ 672 (1387)
T KOG1517|consen 668 TFLSN 672 (1387)
T ss_pred HHhcc
Confidence 87654
No 127
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.07 E-value=3.3 Score=48.24 Aligned_cols=138 Identities=16% Similarity=0.128 Sum_probs=92.9
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCC----CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChh---hhHH
Q 002996 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD---KITE 80 (860)
Q Consensus 8 s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~----~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~---e~~~ 80 (860)
..+|-++++-..+++..+|+=+..-+-.+.+++ .++.-...-.+.+-+.|..|.||--|+-+||.+... +-++
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~ 163 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP 163 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc
Confidence 456889999999999998888887777777644 446666666777888999999999999999998722 1121
Q ss_pred HHHHHHHhhh-cCCChHHHHHHHHHHHHHHhhcccccc---------------------------cccHHHHHHHhhcCC
Q 002996 81 YLCDPLQRCL-KDDDPYVRKTAAICVAKLYDINAELVE---------------------------DRGFLESLKDLISDN 132 (860)
Q Consensus 81 ~l~~~v~~~l-~d~~~~VRk~A~~~l~kl~~~~p~~~~---------------------------~~~~~~~l~~lL~D~ 132 (860)
+...++.++ .|+++-|||.|..++.-=-...|-+++ ....+..++.-|+|+
T Consensus 164 -v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDR 242 (892)
T KOG2025|consen 164 -VVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDR 242 (892)
T ss_pred -HHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhh
Confidence 122222333 489999999998876421111111111 013455666778888
Q ss_pred ChhHHHHHHHHHHH
Q 002996 133 NPMVVANAVAALAE 146 (860)
Q Consensus 133 d~~V~~~al~~l~~ 146 (860)
+-.|-.++.-++..
T Consensus 243 e~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 243 EFSVKGALVDAILS 256 (892)
T ss_pred hhHHHHHHHHHHHH
Confidence 88888887766654
No 128
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.03 E-value=38 Score=41.29 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC-CCHHHHhHHHHHhcCCChhh--hHHHHHHHHHhhhcCCChHHHHHH
Q 002996 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQD-PNPLIRALAVRTMGCIRVDK--ITEYLCDPLQRCLKDDDPYVRKTA 101 (860)
Q Consensus 25 ~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~-~n~~ir~lALr~l~~i~~~e--~~~~l~~~v~~~l~d~~~~VRk~A 101 (860)
++-.|.+.+-.+.=.+.+++--.+..|.|.|+- ....+|..-+-+||.|+..= |++--+|.|-.+|.|+++.|||-+
T Consensus 947 vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt 1026 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQT 1026 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHH
Confidence 344555665555555667888788889998864 34566666666888888654 888899999999999999999999
Q ss_pred HHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 102 AICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 102 ~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
++-+.++.+..-=-....-|+..+..++ |.++-+..-|=-.+.++.+...
T Consensus 1027 ~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1027 IILLARLLQFGIVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred HHHHHHHHhhhhhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhcC
Confidence 9999999864321111111334444444 7888888777667777766543
No 129
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=89.06 E-value=91 Score=41.21 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=72.1
Q ss_pred HHHHHHhhhhcCCChHHH-HHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc-C-CChhHHHHHHHHHHHHHhhChhhhh
Q 002996 198 NIVERVTPRLQHANCAVV-LSAMILQQMELITSTDVVRNLCKKMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRPTILA 274 (860)
Q Consensus 198 ~ll~~v~~~l~~~n~aVv-~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s-~~~niry~aL~~l~~l~~~~p~~~~ 274 (860)
.++.....++++.++.|+ |++.+|..+-...+ ...+ +.++..|++++ + .+.|+- .||+.|..|+..+|+.+.
T Consensus 435 siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s~~q---qeVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~ 509 (1426)
T PF14631_consen 435 SILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-SYCQ---QEVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQ 509 (1426)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHH---HHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-chhH---HHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHH
Confidence 456666677888888754 55544444322222 2122 23466677766 4 466775 889999999999998766
Q ss_pred cc---ce-EEEeccCC-cHHHHHHHHHHHHHhcC--cccHHHHHHHH----HHhhhhccHHHHHH
Q 002996 275 HE---IK-VFFCKYND-PIYVKMEKLEIMIKLAS--DRNIDQVLLEF----KEYATEVDVDFVRK 328 (860)
Q Consensus 275 ~~---~~-~~~~l~~d-~~~Ik~~~L~lL~~l~~--~~Nv~~Iv~eL----~~y~~~~d~~~~~~ 328 (860)
++ ++ ++.++.+= ...||+. .++|..|+- .++...|-+|| .+++...+..+++.
T Consensus 510 ~fa~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 510 PFATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp HTHHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHH
Confidence 54 33 44454332 2556554 888888873 22234555664 35667777777764
No 130
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.77 E-value=0.92 Score=41.28 Aligned_cols=67 Identities=27% Similarity=0.428 Sum_probs=49.7
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHH------HHhhCCCCcHHHHHHHHHHHHHHhh
Q 002996 383 SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES------FLESFPEEPAQVQLQLLTATVKLFL 449 (860)
Q Consensus 383 ~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~------~~~~~~~e~~~v~~~iLta~~Kl~~ 449 (860)
.++..|++.|+...++...++++.=||||....++...+++. +.+-...++++||..+|.|+-|+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 577888888865567888899999999999888776666543 2344566889999999999888764
No 131
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.58 E-value=4.9 Score=44.82 Aligned_cols=106 Identities=11% Similarity=0.128 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHhhCh-hhhhcc----c-eEEEeccC-CcHHHHHHHHHHHHHhcCcc------cHHHHHHHHHHhh
Q 002996 252 PEIQYVALRNINLIVQRRP-TILAHE----I-KVFFCKYN-DPIYVKMEKLEIMIKLASDR------NIDQVLLEFKEYA 318 (860)
Q Consensus 252 ~niry~aL~~l~~l~~~~p-~~~~~~----~-~~~~~l~~-d~~~Ik~~~L~lL~~l~~~~------Nv~~Iv~eL~~y~ 318 (860)
..-+--||..|..+..... .+-..| + ..|..+.+ .+..+|..||.+|..|+..+ ..+..+..+++-.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 3456778888888776542 222222 2 24556655 67899999999999998754 4555666666666
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 002996 319 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV 359 (860)
Q Consensus 319 ~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~ 359 (860)
.+.+++..+.+......++..+ ....||..+..++....
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~--~P~~~I~~i~~~Ilt~D 419 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASH--LPLQCIVNISPLILTAD 419 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhh--CchhHHHHHhhHHhcCc
Confidence 6666666666665543333332 22355555555555533
No 132
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.24 E-value=0.99 Score=30.38 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 002996 121 FLESLKDLISDNNPMVVANAVAALAEIEE 149 (860)
Q Consensus 121 ~~~~l~~lL~D~d~~V~~~al~~l~~i~~ 149 (860)
+++.+.++++|+++.|..+|+.+|..|.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36788999999999999999999998865
No 133
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=2.5 Score=45.62 Aligned_cols=107 Identities=21% Similarity=0.159 Sum_probs=70.6
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCC--chh
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRP--IFE 157 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~~~~--~~~ 157 (860)
.++...+.++++-||+.|+-.+..+.+-+|..- -+.++...|..+|. |.+-.|...|+.|+.....+.+.. .|.
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 345558889999999999999999999999543 23467788888776 555667788999888776654321 122
Q ss_pred ccHHHHHHHHHHhcc--CChhHHHHHHHHHHhcccc
Q 002996 158 ITSHTLSKLLTALNE--CTEWGQVFILDALSRYKAA 191 (860)
Q Consensus 158 ~~~~~~~~Ll~~l~~--~~~w~q~~il~~L~~~~~~ 191 (860)
.+.. +.-|...+.. .+.-.|.+++-+++.+...
T Consensus 207 ~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 207 KLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred hcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 2222 3344444443 4555666666666655543
No 134
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.03 E-value=76 Score=39.08 Aligned_cols=348 Identities=15% Similarity=0.195 Sum_probs=175.6
Q ss_pred cccchHHHhH----hccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHH--HhHHHHHhcCCChh-hhH
Q 002996 7 VSSLFTDVVN----CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLI--RALAVRTMGCIRVD-KIT 79 (860)
Q Consensus 7 ~s~~f~~vi~----l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~i--r~lALr~l~~i~~~-e~~ 79 (860)
+..+||++.+ +++..++..-.++++-++.|- -++-++|=..|..++-.- -++-+ ++++-..| |..
T Consensus 173 v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifk-------s~~~~~LP~~L~~~~~f~~W~~l~l-~i~~rpvP~E~l 244 (1010)
T KOG1991|consen 173 VEELFPDILQIFNGLLSQESYQSVELQKLILKIFK-------SLIYYELPLELSAPETFTSWMELFL-SILNRPVPVEVL 244 (1010)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-------HHHHHhCCHHhhCchhHHHHHHHHH-HHHcCCCChhcc
Confidence 3456777664 677788888888888888652 123344444555444322 22333 33343333 322
Q ss_pred HHHHHHHHhhhcCCChH--HHHHHHHHHHHHHhhccc--ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCc
Q 002996 80 EYLCDPLQRCLKDDDPY--VRKTAAICVAKLYDINAE--LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (860)
Q Consensus 80 ~~l~~~v~~~l~d~~~~--VRk~A~~~l~kl~~~~p~--~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~ 155 (860)
.+-++++ .+.|+ ++|-|+.-+.|+|..+.+ .... +..+-.+-.+..--++|...-+..+.+....
T Consensus 245 -~~d~e~R----~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~-~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~----- 313 (1010)
T KOG1991|consen 245 -SLDPEDR----SSWPWWKCKKWALHILNRLFERYGSPSLVVP-EYKEFAQMFLKNFAQGILEVFLKILEQWRQQ----- 313 (1010)
T ss_pred -cCChhhc----ccccchhhHHHHHHHHHHHHHHhCCccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 2233333 33444 578899999999987543 3221 1111111112222344444444444444331
Q ss_pred hhccHHHHHHHHHHhccC----------ChhHHHHHHHHH-HhccccCH-HHH-----HHHHHHHhhhhcC-CChHHHHH
Q 002996 156 FEITSHTLSKLLTALNEC----------TEWGQVFILDAL-SRYKAADA-REA-----ENIVERVTPRLQH-ANCAVVLS 217 (860)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~~----------~~w~q~~il~~L-~~~~~~~~-~~~-----~~ll~~v~~~l~~-~n~aVv~~ 217 (860)
.-+....+..+++-+..| -|.+|+.+-+++ -.++..+. +|. .+.++.=.+.... .+|. .+
T Consensus 314 ~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~--~A 391 (1010)
T KOG1991|consen 314 LYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPD--TA 391 (1010)
T ss_pred ccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCc--HH
Confidence 112234455555555443 344555444433 23343332 111 1223221122221 1111 11
Q ss_pred H--HHHHHhhhccChHHHHHHHHHhhhHHHhhc-----CCChhHHHHHHHHHHHHHhh----Ch--hh----hhccceEE
Q 002996 218 A--MILQQMELITSTDVVRNLCKKMAPPLVTLL-----SAEPEIQYVALRNINLIVQR----RP--TI----LAHEIKVF 280 (860)
Q Consensus 218 a--~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-----s~~~niry~aL~~l~~l~~~----~p--~~----~~~~~~~~ 280 (860)
| .++.+... ..++.....+..+...|.+.- .+++--++-||+.+..|+.. .| +. +.+|+
T Consensus 392 a~~~l~~~~~K-R~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV--- 467 (1010)
T KOG1991|consen 392 ALDFLTTLVSK-RGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV--- 467 (1010)
T ss_pred HHHHHHHHHHh-cchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh---
Confidence 2 11221111 014444555555555555442 13445788889888777642 33 22 23343
Q ss_pred Eec-cCCcHHHHHHHHHHHHHhc-----CcccHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhh----hHHHHHH
Q 002996 281 FCK-YNDPIYVKMEKLEIMIKLA-----SDRNIDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLER----AAERCIS 349 (860)
Q Consensus 281 ~~l-~~d~~~Ik~~~L~lL~~l~-----~~~Nv~~Iv~eL~~y~~-~~d~~~~~~~i~~I~~la~k~~~----~~~~~v~ 349 (860)
+-. .+.--+.|.||..++...+ ++.|...+++--..-+. +.+--++.+++.|+..+...-+. .......
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~ 547 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPP 547 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence 222 2344889999999999998 45566666665555554 55666778888777665543321 2223444
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCcc
Q 002996 350 VLLELIKIKVNYVVQEAIIVIKDIFRRYPN 379 (860)
Q Consensus 350 ~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~ 379 (860)
++-++|+...++-.+....++..++.++++
T Consensus 548 ~mq~lL~L~ne~End~Lt~vme~iV~~fse 577 (1010)
T KOG1991|consen 548 IMQELLKLSNEVENDDLTNVMEKIVCKFSE 577 (1010)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 555667766666566666677777776654
No 135
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=88.01 E-value=0.77 Score=38.62 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=37.4
Q ss_pred CCeeEEEEEEEecCCCCccceeeeeccCccCcccCCC-CCCCccCCCCeeeEEEeeeecCCCCC
Q 002996 655 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGA-LQVPQLQPGTSGRTLLPMVLFQNMSA 717 (860)
Q Consensus 655 ~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~-~~~~~l~pg~~~~~~v~i~~~~~~~~ 717 (860)
|....+.++++|....++.++.+.++.+ .|+..... ..++.|+||++.+..+.|..+.....
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P-~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~ 66 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLP-EGWTVSASPASVPSLPPGESVTVTFTVTVPADAAP 66 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--S
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCC-CCccccCCccccccCCCCCEEEEEEEEECCCCCCC
Confidence 4456899999999999999999998864 68873222 23559999999999888877654433
No 136
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=69 Score=38.44 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=46.7
Q ss_pred HhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhc
Q 002996 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 87 ~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~ 150 (860)
-+.-.+.=+-=||.|+.++--+-|++.+.+.-.++-+.+..|=.| .|+-.+..++-.++-+..+
T Consensus 29 DRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 29 DRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 333344555669999999999999998887766666666666667 5788888888777666544
No 137
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=87.80 E-value=4.4 Score=41.94 Aligned_cols=88 Identities=25% Similarity=0.363 Sum_probs=59.3
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcC--CChHHHHHHHHHHHHHHhhcccccccccHHHH
Q 002996 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d--~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~ 124 (860)
+||.|-.-+.+...++|-=+--++|.+..+.-++.+ .+.|.| .+|+||--|+.|+..+-. ++-++.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L----~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~v 255 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSL----IKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEV 255 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHH----HHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHH
Confidence 457777777777777777777777777777666554 334433 677888888887776542 135567
Q ss_pred HHHhhcCCChhHHHHHHHHHHH
Q 002996 125 LKDLISDNNPMVVANAVAALAE 146 (860)
Q Consensus 125 l~~lL~D~d~~V~~~al~~l~~ 146 (860)
|++.+.|..+.|.-++..+|.-
T Consensus 256 L~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHH
Confidence 7777777777777666666643
No 138
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=87.43 E-value=5.6 Score=39.41 Aligned_cols=122 Identities=29% Similarity=0.325 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhh-cccc--------ccc------ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcC---------C
Q 002996 97 VRKTAAICVAKLYDI-NAEL--------VED------RGFLESLKDLISDNNPMVVANAVAALAEIEENS---------S 152 (860)
Q Consensus 97 VRk~A~~~l~kl~~~-~p~~--------~~~------~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~---------~ 152 (860)
||-.|+.|+.-+.+. +|.. +++ ..-...+.-++.|.++.|..+|+.++..+.+.. +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677888888777766 3221 121 123345556788999999999999888876442 0
Q ss_pred C-C--chh--------ccHHHHHHHHHHhc-cCChhHHHHHHHHHHhcccc------CHHHHHHHHHHHhhhhcCCChHH
Q 002996 153 R-P--IFE--------ITSHTLSKLLTALN-ECTEWGQVFILDALSRYKAA------DAREAENIVERVTPRLQHANCAV 214 (860)
Q Consensus 153 ~-~--~~~--------~~~~~~~~Ll~~l~-~~~~w~q~~il~~L~~~~~~------~~~~~~~ll~~v~~~l~~~n~aV 214 (860)
. . -|. .+...-+.|+..|. +.++=....++++|..+... ..+-...++..+.+++.|.++.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 0 1 111 11222233333332 33444566677777755432 23445677788888888888887
Q ss_pred HHHH
Q 002996 215 VLSA 218 (860)
Q Consensus 215 v~~a 218 (860)
..++
T Consensus 162 ~v~~ 165 (182)
T PF13251_consen 162 RVAA 165 (182)
T ss_pred HHHH
Confidence 7666
No 139
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.13 E-value=81 Score=40.71 Aligned_cols=109 Identities=17% Similarity=0.293 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHH----HHHHHHhhcccccC-CHHHHHHHHHhhCCCCcHHHHHHHH
Q 002996 367 IIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKA----SMIWIIGEYAERID-NADELLESFLESFPEEPAQVQLQLL 441 (860)
Q Consensus 367 i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~----~~~wilGEy~~~i~-~~~~~l~~~~~~~~~e~~~v~~~iL 441 (860)
-..|.++.+-.|++--.++++|..-|.. +..+.+. .+.-++++++..+. .-++++..|+.+|.+-+.+||...+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~s-e~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v 321 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLS-EQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECV 321 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHH
Confidence 3455666666677767777777654432 1222332 33455566665554 3578899999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHH
Q 002996 442 TATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDR 479 (860)
Q Consensus 442 ta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdR 479 (860)
....-++...|.. .......+... ..+.|+++|-|
T Consensus 322 ~~~~~~l~~~~~~--~~~~~~~~~l~-~~~~D~~~rir 356 (1266)
T KOG1525|consen 322 ESIKQCLLNNPSI--AKASTILLALR-ERDLDEDVRVR 356 (1266)
T ss_pred HHhHHHHhcCchh--hhHHHHHHHHH-hhcCChhhhhe
Confidence 9999999988863 33344444433 24567777665
No 140
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=46 Score=35.60 Aligned_cols=172 Identities=14% Similarity=0.226 Sum_probs=107.4
Q ss_pred hccCCCcchHHHHHHHHHHhcCCCC--c--HHHHHHH-HHHh---h-cCCCCHHHHhHHHHHhcCCC-hhhhHHHHHH--
Q 002996 17 CMQTENLELKKLVYLYLINYAKSQP--D--LAILAVN-TFVK---D-SQDPNPLIRALAVRTMGCIR-VDKITEYLCD-- 84 (860)
Q Consensus 17 l~~s~~~~~Krl~Yl~l~~~~~~~~--e--l~~L~in-~l~k---D-l~~~n~~ir~lALr~l~~i~-~~e~~~~l~~-- 84 (860)
-+..+|-+.|-+..=.+..+.+... + ..++++| -+.| | .-+.|..+--.|+.++.+|. .|.-.+.+.+
T Consensus 90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSe 169 (524)
T KOG4413|consen 90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESE 169 (524)
T ss_pred cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccc
Confidence 3445555666665554444443322 1 2344444 3444 2 35578888888999998885 3444443322
Q ss_pred -----HHHhhhcCCChHHHHHHHHHHHHHHhhcccccc---cccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCCCc
Q 002996 85 -----PLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPI 155 (860)
Q Consensus 85 -----~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~---~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~~~~~~ 155 (860)
.+..+..-.+..+|-+..--+.+++..+|+... ..++++.|..=|.- +|..|+++++-+.+++....-+..
T Consensus 170 llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgre 249 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGRE 249 (524)
T ss_pred cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhh
Confidence 122333446778888888888999999987653 35677777666654 899999999999999886543323
Q ss_pred hhccHHHHHHHHHHhc--cCChhHHHHHHHHHHhc
Q 002996 156 FEITSHTLSKLLTALN--ECTEWGQVFILDALSRY 188 (860)
Q Consensus 156 ~~~~~~~~~~Ll~~l~--~~~~w~q~~il~~L~~~ 188 (860)
|-.....+..+++++. +.+||..-..|-.+.++
T Consensus 250 flaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 250 FLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred hcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 3333456777888875 56888877544444443
No 141
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.61 E-value=61 Score=36.51 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=42.6
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHh---hcccccccccHHHHHHHhhcC-CChhHHHHHHHHHHHHhh
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYD---INAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEE 149 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~---~~p~~~~~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~ 149 (860)
.++.-+.+++...+|-+||..++-+..+-- .-|..+. .+++|.+..+|++ ..+++ |+..++.+.-
T Consensus 345 ~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~-~GllP~l~~ll~~d~~~~i---A~~~lYh~S~ 413 (791)
T KOG1222|consen 345 GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN-GGLLPHLASLLDSDTKHGI---ALNMLYHLSC 413 (791)
T ss_pred cHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh-ccchHHHHHHhCCcccchh---hhhhhhhhcc
Confidence 445566778888999999988776665431 2234443 4889999999975 44554 3445666543
No 142
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.59 E-value=30 Score=41.19 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh----hhhhH
Q 002996 288 IYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK----VNYVV 363 (860)
Q Consensus 288 ~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~----~~~v~ 363 (860)
...|..=+|.|...++...+..|.+.+..- +.... ++...+..+..-...-...+++.+.+|++.. ..++.
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~--~~~~~---ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~ 414 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNK--KITPL---EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLR 414 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--CCCHH---HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHH
Confidence 457777889999999988888887776542 11221 2333333333222223357888888888754 23566
Q ss_pred HHHHHHHHHHHHh----CcccH----HHHHHHHHHhhccC---CchHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCC
Q 002996 364 QEAIIVIKDIFRR----YPNTY----ESIIATLCESLDTL---DEPEAKASMIWIIGEYAERIDNADELLESFLESFPEE 432 (860)
Q Consensus 364 ~e~i~~l~~i~~~----~p~~~----~~~i~~L~~~l~~~---~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e 432 (860)
..+|..+..++++ .+..+ +..+..+.+.|... .+.+-+..++-.||.-|+. .+...+..++..=...
T Consensus 415 ~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--~~i~~l~~~l~~~~~~ 492 (574)
T smart00638 415 ESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--SSIKVLEPYLEGAEPL 492 (574)
T ss_pred HHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--hHHHHHHHhcCCCCCC
Confidence 6777766666654 22211 33344444433221 1222345567778887763 3445566555522344
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCH
Q 002996 433 PAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDP 491 (860)
Q Consensus 433 ~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~ 491 (860)
+..+|.+++.|+-++....|.. .++.+..++.. ...++|||--| |..|+..+|
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n---~~e~~EvRiaA--~~~lm~t~P 545 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN---RAEPPEVRMAA--VLVLMETKP 545 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC---CCCChHHHHHH--HHHHHhcCC
Confidence 6889999999999999888876 67777777653 45788988766 555666544
No 143
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=86.45 E-value=56 Score=35.93 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhChhhhhccce-EEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhh
Q 002996 256 YVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT 319 (860)
Q Consensus 256 y~aL~~l~~l~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~ 319 (860)
-+|-+-|-+.-...|++-..-+. .|.|..++|..||+.|+.=|-..|..++...+.++|.+-+.
T Consensus 42 ~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 42 RLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 33444444444556655433232 45667788999999999999999999998888887766554
No 144
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=86.14 E-value=61 Score=36.05 Aligned_cols=353 Identities=14% Similarity=0.166 Sum_probs=171.1
Q ss_pred CCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhH
Q 002996 57 DPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (860)
Q Consensus 57 ~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V 136 (860)
..|+.....-+.-|+.+..++.++++..-+-..|......++ +.+.+...+.-. .|...+. +|.+.|...
T Consensus 61 ~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k~~---~~~~fl~-ll~r~d~~i 130 (442)
T KOG2759|consen 61 ANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLKRT---EWLSFLN-LLNRQDTFI 130 (442)
T ss_pred cccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhhcc---chHHHHH-HHhcCChHH
Confidence 345566777788888888899999888888888876544332 334443333322 2545444 555666555
Q ss_pred HHHHHHHHHHHhhcCC----CCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHH----HHHHHHhhhh-
Q 002996 137 VANAVAALAEIEENSS----RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE----NIVERVTPRL- 207 (860)
Q Consensus 137 ~~~al~~l~~i~~~~~----~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~----~ll~~v~~~l- 207 (860)
+.-+...+..+..... ...+.+....+..+++. . -++-......++|+.+...++-... +=...+...+
T Consensus 131 v~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~-~-~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~ 208 (442)
T KOG2759|consen 131 VEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQS-S-TNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA 208 (442)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-c-CCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh
Confidence 5423333333332211 11122222223333322 1 1222233345666655443321000 0011222223
Q ss_pred cC-CChHHHHHH-HHHHHhhhccChHHHHHHHH--HhhhHHHhhcCC--ChhHHHHHHHHHHHHHhhChhhhhccceEEE
Q 002996 208 QH-ANCAVVLSA-MILQQMELITSTDVVRNLCK--KMAPPLVTLLSA--EPEIQYVALRNINLIVQRRPTILAHEIKVFF 281 (860)
Q Consensus 208 ~~-~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~--~~~~~L~~lls~--~~niry~aL~~l~~l~~~~p~~~~~~~~~~~ 281 (860)
++ .+-=+.|.. ..++.|.+ ++...+.+ . .+.+.|..+++. ..-+--+++-.+..+..+.|
T Consensus 209 s~~~~~QlQYqsifciWlLtF--n~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~----------- 274 (442)
T KOG2759|consen 209 STKCGFQLQYQSIFCIWLLTF--NPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP----------- 274 (442)
T ss_pred ccCcchhHHHHHHHHHHHhhc--CHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----------
Confidence 11 222345555 23444432 33322211 1 123334444421 11233334444444443332
Q ss_pred eccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH---hhhhhHHHHHH-HHHHHHHh
Q 002996 282 CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAI---KLERAAERCIS-VLLELIKI 357 (860)
Q Consensus 282 ~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~---k~~~~~~~~v~-~ll~ll~~ 357 (860)
+.+.|+.+.-.+.. .++...++-|.+- .-.|.+++.++-.--..+-. ++. ..+.|.. .....|.-
T Consensus 275 -----~~~~~k~~~~~mv~----~~v~k~l~~L~~r-kysDEDL~~di~~L~e~L~~svq~Ls-SFDeY~sEl~sG~L~W 343 (442)
T KOG2759|consen 275 -----DRETKKDIASQMVL----CKVLKTLQSLEER-KYSDEDLVDDIEFLTEKLKNSVQDLS-SFDEYKSELRSGRLEW 343 (442)
T ss_pred -----hhhHHHHHHHHHHh----cCchHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHhCCcCC
Confidence 34444433222221 1233344444321 22455554433221111221 111 2333333 22334444
Q ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHH------HHhhCCC
Q 002996 358 KVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES------FLESFPE 431 (860)
Q Consensus 358 ~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~------~~~~~~~ 431 (860)
+..+..+.-|.-=.+-+.+ + .-.++..|.+.|+.-.+|...+++++=||||....+....+++. +.+-...
T Consensus 344 SP~Hk~e~FW~eNa~rlne--n-nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh 420 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRLNE--N-NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH 420 (442)
T ss_pred CccccccchHHHhHHHHhh--c-cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC
Confidence 5556677777632222221 1 23577888888988788989999999999999888776666543 3455667
Q ss_pred CcHHHHHHHHHHHHHHhh
Q 002996 432 EPAQVQLQLLTATVKLFL 449 (860)
Q Consensus 432 e~~~v~~~iLta~~Kl~~ 449 (860)
++++||..+|.|+-|+-.
T Consensus 421 ~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 421 EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 889999999988888754
No 145
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.44 E-value=16 Score=43.15 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=81.7
Q ss_pred CCCcccchHHHhHhccCCCc-chHHHHH--HHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhc--CC--Chh
Q 002996 4 GKDVSSLFTDVVNCMQTENL-ELKKLVY--LYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMG--CI--RVD 76 (860)
Q Consensus 4 G~d~s~~f~~vi~l~~s~~~-~~Krl~Y--l~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~--~i--~~~ 76 (860)
|.--..++-++....+..-+ ..+|=.= +++..|..+. .+- +-+.+-+.|.||..|.--.-+++ .. ++.
T Consensus 479 Gt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe--~Ad---~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn 553 (929)
T KOG2062|consen 479 GTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE--DAD---PLIKELLRDKDPILRYGGMYTLALAYVGTGNN 553 (929)
T ss_pred CcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh--hhH---HHHHHHhcCCchhhhhhhHHHHHHHHhccCch
Confidence 43344455556655443333 2444333 3444444433 343 33444445568888854333222 22 233
Q ss_pred hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCC-C
Q 002996 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSR-P 154 (860)
Q Consensus 77 e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~~~-~ 154 (860)
..++.| +.=++.|.|.-|||.|++|+.-+.-.+|+.++ ...++|. ..||.|.+.|..+|---|...+. .
T Consensus 554 kair~l---Lh~aVsD~nDDVrRaAVialGFVl~~dp~~~~------s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 554 KAIRRL---LHVAVSDVNDDVRRAAVIALGFVLFRDPEQLP------STVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhHHHh---hcccccccchHHHHHHHHHheeeEecChhhch------HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 333333 23345789999999999999988888888654 4556665 46899998888777666654432 2
Q ss_pred chhccHHH
Q 002996 155 IFEITSHT 162 (860)
Q Consensus 155 ~~~~~~~~ 162 (860)
.+.++.+.
T Consensus 625 Ai~lLepl 632 (929)
T KOG2062|consen 625 AINLLEPL 632 (929)
T ss_pred HHHHHhhh
Confidence 34444333
No 146
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.22 E-value=99 Score=36.79 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=54.0
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCC------hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh--hcccccccccHH
Q 002996 51 FVKDSQDPNPLIRALAVRTMGCIR------VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD--INAELVEDRGFL 122 (860)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~------~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~--~~p~~~~~~~~~ 122 (860)
+.+-..+++-.||=-.+.-|+.+. ..++..-+...+..-+.|+.|.||.-|+.|+.|+=. .+++ + ...
T Consensus 90 lLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee-~---~v~ 165 (892)
T KOG2025|consen 90 LLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE-C---PVV 165 (892)
T ss_pred HHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-c---cHH
Confidence 445555555555544443333332 345556666667777778888888888888887652 1222 2 256
Q ss_pred HHHHHhh-cCCChhHHHHHHH
Q 002996 123 ESLKDLI-SDNNPMVVANAVA 142 (860)
Q Consensus 123 ~~l~~lL-~D~d~~V~~~al~ 142 (860)
..+..++ +|+++.|..+|+.
T Consensus 166 n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 166 NLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred HHHHHHHhcCCcHHHHHHHHH
Confidence 6667776 4788888887654
No 147
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.12 E-value=8.7 Score=38.39 Aligned_cols=134 Identities=12% Similarity=0.124 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Q 002996 307 IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 386 (860)
Q Consensus 307 v~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~ 386 (860)
++.-++.+++.+.+.+..++..+++-|+.+...-=-.+..|+.+++.|..+....+...+...++.+..++|++-..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~--- 82 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES--- 82 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH---
Confidence 44566677777777888888888888877666544456789999999999988899999999999999888764321
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccC----CHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCC
Q 002996 387 TLCESLDTLDEPEAKASMIWIIGEYAERID----NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 452 (860)
Q Consensus 387 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~----~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p 452 (860)
.+.+ .++.+.-+...-+++... .....+..++.-+. .+...|...|++++|.+....
T Consensus 83 ~~~~--------gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 83 RYSE--------GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHH--------HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 1111 122233333332322221 13445555555444 556777888888888887654
No 148
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=12 Score=42.62 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=68.6
Q ss_pred chHHHhHhccCC-CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHh-----HHHHHhcCCChhhhHHHHH
Q 002996 10 LFTDVVNCMQTE-NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRA-----LAVRTMGCIRVDKITEYLC 83 (860)
Q Consensus 10 ~f~~vi~l~~s~-~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~-----lALr~l~~i~~~e~~~~l~ 83 (860)
+.-++....... .-..||-.=+.+....--.+|++-=.||-+..| .++..|. +||-..+ -+...++..+
T Consensus 482 ai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d---~ds~lRy~G~fs~alAy~G-Tgn~~vv~~l- 556 (926)
T COG5116 482 AIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYD---KDSILRYNGVFSLALAYVG-TGNLGVVSTL- 556 (926)
T ss_pred HHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcC---chHHhhhccHHHHHHHHhc-CCcchhHhhh-
Confidence 334444433332 333555444433333333445555555555544 4455553 3433332 2333333333
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcC
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~ 151 (860)
+.-.+.|.+.-|||.|+.|+.-++-.+|+.+ ....++|. ..|+.|.+....+|---|...
T Consensus 557 --Lh~avsD~nDDVrRAAViAlGfvc~~D~~~l------v~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 557 --LHYAVSDGNDDVRRAAVIALGFVCCDDRDLL------VGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred --heeecccCchHHHHHHHHheeeeEecCcchh------hHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 2334678888899999999888777777654 33445555 467777766555555444443
No 149
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.43 E-value=3.6 Score=45.78 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=55.8
Q ss_pred CCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCC-CCCccCCCCeeeEEEeeeecCCCCCCCCCcceEEEEec
Q 002996 655 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGAL-QVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKN 730 (860)
Q Consensus 655 ~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~-~~~~l~pg~~~~~~v~i~~~~~~~~~~~~~~l~~~~~~ 730 (860)
|....+.+.+.|....|||++.+.++.|. ||..+... .++.|+||++.++.+.|..+....... ..+++..+.
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~Pq-gWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGd--Y~i~i~~ks 469 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQ-GWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGD--YRITITAKS 469 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCc-cceEEECcccccccCCCCcceEEEEEEcCCCCCCCc--EEEEEEEee
Confidence 34567889999999999999999999765 78887654 589999999999999888776444432 344555554
No 150
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=83.13 E-value=84 Score=35.12 Aligned_cols=230 Identities=14% Similarity=0.123 Sum_probs=126.5
Q ss_pred HHHHHHHHHH--hhcCCCCH----HHHhHHHHHhcCCChhhhH-----HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh
Q 002996 43 LAILAVNTFV--KDSQDPNP----LIRALAVRTMGCIRVDKIT-----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (860)
Q Consensus 43 l~~L~in~l~--kDl~~~n~----~ir~lALr~l~~i~~~e~~-----~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~ 111 (860)
+..-.+|-++ ||+.++.+ +-|+.-|-.+-..+...|- +.+..-+...+.+.+...--.+++++..+.|.
T Consensus 266 l~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~ 345 (604)
T KOG4500|consen 266 LLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR 345 (604)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc
Confidence 4445556665 47776544 4456666666666666654 33666777888888888999999999999987
Q ss_pred cccccc--cccHHHHHHHhhc-----CCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHH
Q 002996 112 NAELVE--DRGFLESLKDLIS-----DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDA 184 (860)
Q Consensus 112 ~p~~~~--~~~~~~~l~~lL~-----D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~ 184 (860)
+...+. +.++.+.|.++|. |.|..++.+++++|..+.--.+....-+-......++..++--.|-.+-+++-.
T Consensus 346 D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgT 425 (604)
T KOG4500|consen 346 DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGT 425 (604)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHH
Confidence 654332 3468888888773 567788889999997754211111011112234455555554455555556555
Q ss_pred HHhccccCHHHHH------HHHHHHhhhhcCCChH-HHHHH-H-HHHHhhhccChHHHHHHHH-HhhhHHHhhc-CCChh
Q 002996 185 LSRYKAADAREAE------NIVERVTPRLQHANCA-VVLSA-M-ILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPE 253 (860)
Q Consensus 185 L~~~~~~~~~~~~------~ll~~v~~~l~~~n~a-Vv~~a-~-~~~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~n 253 (860)
|+...-..+.-+. ++++.+...-++.+-+ |..|. . +...++.....+.+..+.+ ..+..+++++ +.+-+
T Consensus 426 lrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~ 505 (604)
T KOG4500|consen 426 LRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHIN 505 (604)
T ss_pred HHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHH
Confidence 5544322221121 3444444444555554 66666 2 2233322111111111100 0122344544 34556
Q ss_pred HHHHHHHHHHHHHhhChhh
Q 002996 254 IQYVALRNINLIVQRRPTI 272 (860)
Q Consensus 254 iry~aL~~l~~l~~~~p~~ 272 (860)
++--+|-++..+...++..
T Consensus 506 mqnEalVal~~~~~~yl~~ 524 (604)
T KOG4500|consen 506 MQNEALVALLSTESKYLIV 524 (604)
T ss_pred HhHHHHHHHHHHHHHhccc
Confidence 6767777777666666543
No 151
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=83.02 E-value=15 Score=36.74 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=53.1
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
+.+.+-..|.++++||.|..++.+.+....+ .. .+.+.+..++.|.+..|..+.--+|.++....+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~-~~--~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETD-FD--LLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhccc-HH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 3567777889999999999999998877222 22 477888889999999999888888999887755
No 152
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=82.53 E-value=7.9 Score=43.14 Aligned_cols=138 Identities=16% Similarity=0.212 Sum_probs=96.7
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCC--------cHHHHHHHHHHhhcCCCCHHHHhHHHHHhc---CC--Chhh
Q 002996 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQP--------DLAILAVNTFVKDSQDPNPLIRALAVRTMG---CI--RVDK 77 (860)
Q Consensus 11 f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~--------el~~L~in~l~kDl~~~n~~ir~lALr~l~---~i--~~~e 77 (860)
...+..++-+++-+.+-.||=.+..+..... .+-.+++=++.+|.+ ++.-|--||+.+- .+ +..+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCccc
Confidence 3344434445558888889887766554332 234566677888765 4666777776654 44 4556
Q ss_pred hHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
+-..++..|..+..+.+.-.|..|+.++..+.-.+|+++-..+=+..+.+.+.|....+.-+.+.++..+...
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 7788888899999999989999999999999999999986555567777777676555555666666666543
No 153
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.39 E-value=3.7 Score=48.06 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=96.6
Q ss_pred HHhHhccCCCcchHHHHHHHHHH-hcCCCCcHHHHHHHHHHh-hcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHh
Q 002996 13 DVVNCMQTENLELKKLVYLYLIN-YAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQR 88 (860)
Q Consensus 13 ~vi~l~~s~~~~~Krl~Yl~l~~-~~~~~~el~~L~in~l~k-Dl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~v~~ 88 (860)
-|-+++..+|..+|+-|-+.+-. |.-.-.. -+|-.+.. -.+|.|..||-.|..+||-+. +|+.++. +..
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s----~V~ 595 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGNN---KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPS----TVS 595 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCch---hhHHHhhcccccccchHHHHHHHHHheeeEecChhhchH----HHH
Confidence 34458888999999888766544 3222111 12233332 357899999999999999875 6665554 344
Q ss_pred hhc-CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHH-hhcCCC--CchhccHHHHH
Q 002996 89 CLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI-EENSSR--PIFEITSHTLS 164 (860)
Q Consensus 89 ~l~-d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i-~~~~~~--~~~~~~~~~~~ 164 (860)
+|. +-||+||=-||+++.-.+.-.... .-++.|..|..|..--|.-.|+.++.-| .+.... +...-+.+.+.
T Consensus 596 lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~ 671 (929)
T KOG2062|consen 596 LLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLE 671 (929)
T ss_pred HHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHH
Confidence 444 689999999999998665432221 2678888899999888887777665544 333211 22333444555
Q ss_pred HHHHHh-cc-CChhHHH
Q 002996 165 KLLTAL-NE-CTEWGQV 179 (860)
Q Consensus 165 ~Ll~~l-~~-~~~w~q~ 179 (860)
+++.-= .+ ...++-+
T Consensus 672 kvI~dKhEd~~aK~GAi 688 (929)
T KOG2062|consen 672 KVINDKHEDGMAKFGAI 688 (929)
T ss_pred HHhhhhhhHHHHHHHHH
Confidence 555432 22 2455554
No 154
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=81.97 E-value=1.9 Score=31.40 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=20.6
Q ss_pred HHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHH
Q 002996 105 VAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVA 142 (860)
Q Consensus 105 l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~ 142 (860)
+..+...+|++.....+.+.+...|.|.++.|.-+|+-
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHH
Confidence 44455555555554445555555555655655555544
No 155
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=81.46 E-value=16 Score=34.36 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHhhc-ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 95 PYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 95 ~~VRk~A~~~l~kl~~~~-p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
++||++.+.++..+...+ |+.-++ +++.+.+++.. ++.-....+.+|..+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~--~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPD--FLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCch--HHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 689999999999999764 887764 88888888876 3444444454444443
No 156
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=80.63 E-value=48 Score=37.60 Aligned_cols=188 Identities=13% Similarity=0.198 Sum_probs=102.7
Q ss_pred HHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCc-ccHHHHH
Q 002996 312 LEFKEYATEVDVDFVRKAVRAIGRCAIKLERA----AERCISVLLELIKIKV-NYVVQEAIIVIKDIFRRYP-NTYESII 385 (860)
Q Consensus 312 ~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~----~~~~v~~ll~ll~~~~-~~v~~e~i~~l~~i~~~~p-~~~~~~i 385 (860)
..|++-+.+.|+.=|..+..-+.++-.|+... ...+-+.+.+.+.... .+...|+...+..|+.... .+.+.-.
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~ 215 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHK 215 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHH
Confidence 33444444445444433333333334444332 2234444555555333 3456778888888887643 2333222
Q ss_pred HHHHHhh---ccCC-chHHHHHHHHHHhhcccccCC-HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 002996 386 ATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMI 460 (860)
Q Consensus 386 ~~L~~~l---~~~~-~~~~~~~~~wilGEy~~~i~~-~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i 460 (860)
..+.+.+ -... .+.-..-+..++..|.+.-+. +..+++.++..|+..++.-+...|.-+..+....|+++.....
T Consensus 216 ~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~ 295 (409)
T PF01603_consen 216 QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM 295 (409)
T ss_dssp HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2232222 1111 122245667777777765433 6789999999999999999999999999998877754333333
Q ss_pred ---HHHHHhcccCCCChHHHHHHHHHH------HHhcCCHHHHHHhhhc
Q 002996 461 ---QVVLNNATVETDNPDLRDRAYIYW------RLLSTDPEAAKDVVLA 500 (860)
Q Consensus 461 ---~~~l~~~~~~s~~~evrdRA~~y~------~ll~~~~~~~~~~v~~ 500 (860)
-+.+..|. +|.+..|-+||..+| .+++.+....-.+++.
T Consensus 296 ~~lf~~la~ci-~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~ 343 (409)
T PF01603_consen 296 VPLFKRLAKCI-SSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFP 343 (409)
T ss_dssp HHHHHHHHHHH-TSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHH
Confidence 33455565 689999999999887 3444455544444443
No 157
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=79.84 E-value=20 Score=34.09 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=62.2
Q ss_pred hccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC----h---hhhH-HHHHHHHHh
Q 002996 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----V---DKIT-EYLCDPLQR 88 (860)
Q Consensus 17 l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~----~---~e~~-~~l~~~v~~ 88 (860)
+.+....+.---.-+-++-....+++-..-++..|+|-++++||.++-+||..|-.+. . .+++ ..+...+.+
T Consensus 12 ATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 12 ATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred HcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 3333344444445566666667777777889999999999999999999997765431 1 1222 445555666
Q ss_pred hhc-CCChHHHHHHHHHHHHHHh
Q 002996 89 CLK-DDDPYVRKTAAICVAKLYD 110 (860)
Q Consensus 89 ~l~-d~~~~VRk~A~~~l~kl~~ 110 (860)
++. ..++-||++++..+..-..
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHHH
Confidence 665 4788888888776665443
No 158
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=79.59 E-value=12 Score=36.62 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=58.7
Q ss_pred hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhc-cccccc--ccHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhc
Q 002996 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AELVED--RGFLESLKDLISDN-NPMVVANAVAALAEIEEN 150 (860)
Q Consensus 75 ~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~-p~~~~~--~~~~~~l~~lL~D~-d~~V~~~al~~l~~i~~~ 150 (860)
.......+..-+..++.+++++-|-.++.-+..+.+.+ +|.+.+ ..|+..+...|+.. .+.+...|+.++..|...
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 44556778888999999999999998888777778876 676632 36999999999864 456677888888777654
No 159
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.45 E-value=23 Score=39.98 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=75.6
Q ss_pred HHHhhcCCCCHHHHhHHHHHhcCCCh------hhhHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhcc-ccccc--c
Q 002996 50 TFVKDSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA-ELVED--R 119 (860)
Q Consensus 50 ~l~kDl~~~n~~ir~lALr~l~~i~~------~e~~~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p-~~~~~--~ 119 (860)
++-.-..||+..+|++|+|.|++... ..+...+...|.+.|-| .+.-|-=.|+.|+.++..+-- ..+.. -
T Consensus 262 ~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 262 SLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence 33445578999999999999998753 24556777777777776 667788888888888775421 11211 0
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002996 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (860)
Q Consensus 120 ~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~ 153 (860)
+...++..+.+|.++.+..+|+.++..+.+-.++
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence 2456788899999999999999999888765443
No 160
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=79.22 E-value=96 Score=33.31 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=75.9
Q ss_pred hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc-ccc------ccccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002996 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELV------EDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (860)
Q Consensus 75 ~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p-~~~------~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i 147 (860)
...+++.+.+.+++.|.+.+..|+--|+-.++++..-+. +.+ -+.++.+.+...+-..|-.|.-+|+-.+..|
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 455678888889999999888898888888888876543 111 1334556666666667778888877777666
Q ss_pred hhcCCC--CchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH-----HHHHHHHhhhhcC
Q 002996 148 EENSSR--PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-----ENIVERVTPRLQH 209 (860)
Q Consensus 148 ~~~~~~--~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~-----~~ll~~v~~~l~~ 209 (860)
..-... .+|+-.-.-=-++.+.-..|+....+.++.++-....-+++.+ ..+++.+..-++.
T Consensus 156 alfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG 224 (524)
T KOG4413|consen 156 ALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG 224 (524)
T ss_pred HhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC
Confidence 532100 0111000000112222235666777777776655443333322 2344444444444
No 161
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.15 E-value=9 Score=37.21 Aligned_cols=137 Identities=17% Similarity=0.248 Sum_probs=74.6
Q ss_pred CCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCC-----hHHHHHHHHHHHHHHhhcc
Q 002996 39 SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDD-----PYVRKTAAICVAKLYDINA 113 (860)
Q Consensus 39 ~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~-----~~VRk~A~~~l~kl~~~~p 113 (860)
..|++.-+..+.++.+ + ++.+|--|+|+||.||--+ ++-...+.+...+.. ....-... ......|
T Consensus 7 ~yP~LL~~L~~iLk~e-~--s~~iR~E~lr~lGilGALD--P~~~k~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~ 77 (160)
T PF11865_consen 7 DYPELLDILLNILKTE-Q--SQSIRREALRVLGILGALD--PYKHKSIQKSLDSKSSENSNDESTDISL----PMMGISP 77 (160)
T ss_pred HhHHHHHHHHHHHHhC-C--CHHHHHHHHHHhhhccccC--cHHHhcccccCCccccccccccchhhHH----hhccCCC
Confidence 4588888899999998 4 4899999999999998322 222222333222211 11111111 1111111
Q ss_pred ---cccccccHHHHHHHhhcCCChhH-HHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHH
Q 002996 114 ---ELVEDRGFLESLKDLISDNNPMV-VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDAL 185 (860)
Q Consensus 114 ---~~~~~~~~~~~l~~lL~D~d~~V-~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L 185 (860)
|... .-.+..|.+.|+|....- -.+++.++..|.+..+..+...+.+.++.+++.+..|++-..-.+++-|
T Consensus 78 ~~ee~y~-~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 78 SSEEYYP-TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred chHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 1111 112355566666643222 2245556666665555556777777788888877777664444444443
No 162
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=78.74 E-value=26 Score=32.83 Aligned_cols=90 Identities=19% Similarity=0.149 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhHH-HHHHHHHhhhcC---
Q 002996 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKITE-YLCDPLQRCLKD--- 92 (860)
Q Consensus 24 ~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~----~e~~~-~l~~~v~~~l~d--- 92 (860)
+.-.-+-+.++-....+++-+..++..|+|=++++||.++-+||..|-.+. . .+++. .....+.+++..
T Consensus 15 ~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~ 94 (133)
T cd03561 15 EPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPK 94 (133)
T ss_pred CccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCC
Confidence 344445556666666667777888888998898889988888888775432 1 22222 334456666654
Q ss_pred CChHHHHHHHHHHHHHHhhcc
Q 002996 93 DDPYVRKTAAICVAKLYDINA 113 (860)
Q Consensus 93 ~~~~VRk~A~~~l~kl~~~~p 113 (860)
.++-||++++..+.......+
T Consensus 95 ~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 95 YDPKVREKALELILAWSESFG 115 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHhc
Confidence 577888888777766555443
No 163
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.64 E-value=24 Score=34.48 Aligned_cols=106 Identities=22% Similarity=0.249 Sum_probs=70.6
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhH----HHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhh---ccc
Q 002996 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT----EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI---NAE 114 (860)
Q Consensus 46 L~in~l~kDl~~~n~~ir~lALr~l~~i~---~~e~~----~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~---~p~ 114 (860)
-.+..+.+=|+|+++.-|-.++..+.-+. .+|+. ...+..+.+.|.. ..+.+++.|+.++.++|.. .|+
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34456777788999999988888777654 24554 3334445555554 6778899999999999964 666
Q ss_pred cccc------ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002996 115 LVED------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (860)
Q Consensus 115 ~~~~------~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~ 153 (860)
+.++ ..++..+.+++++ ..+...++.+|..+.+..|.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 6543 1344555555554 56666777777777766554
No 164
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.56 E-value=56 Score=39.48 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhHHHHHH-----H-HHHHHHhhhhhhHHHHHHHHHHHHHhCcc
Q 002996 307 IDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLERAAERCIS-----V-LLELIKIKVNYVVQEAIIVIKDIFRRYPN 379 (860)
Q Consensus 307 v~~Iv~eL~~y~~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~-----~-ll~ll~~~~~~v~~e~i~~l~~i~~~~p~ 379 (860)
++.++.-|..-++ +.+.++.-.+++++..+++-+|+.....|+ + +-+|+...---+.+.+++.+..|-|.+|.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 4455666666654 456788888999999999999987766665 3 33455554444667788888888888775
Q ss_pred c--HHHHHHHHHHhhccCCchHHHHHHHHHHhhccccc
Q 002996 380 T--YESIIATLCESLDTLDEPEAKASMIWIIGEYAERI 415 (860)
Q Consensus 380 ~--~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i 415 (860)
. +...+.....+|+-.. -.+.++++-+....|..+
T Consensus 289 AiL~AG~l~a~LsylDFFS-i~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFS-IHAQRVALAIAANCCKSI 325 (1051)
T ss_pred HHHhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 3 3333444444444221 234444555555555544
No 165
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=78.38 E-value=3.5 Score=42.66 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=49.0
Q ss_pred HHHHHhhcCC--CCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 002996 48 VNTFVKDSQD--PNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKL 108 (860)
Q Consensus 48 in~l~kDl~~--~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl 108 (860)
|.++.|-|.+ .+|++|..|..+||.|++++-++. +++.+.|..+.||+.+..++--+
T Consensus 220 i~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~~v----L~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 220 IPSLIKVLLDETEHPMVRHEAAEALGAIADEDCVEV----LKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHHHH----HHHHcCCcHHHHHHHHHHHHHHH
Confidence 7888888866 589999999999999999876665 68899999999999999887543
No 166
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=78.22 E-value=89 Score=32.39 Aligned_cols=147 Identities=17% Similarity=0.160 Sum_probs=79.0
Q ss_pred CCCCHHHHhHHHHHhcCCChh--hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHh-----
Q 002996 56 QDPNPLIRALAVRTMGCIRVD--KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL----- 128 (860)
Q Consensus 56 ~~~n~~ir~lALr~l~~i~~~--e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~l----- 128 (860)
+.++|......|++|..+... ...+.+...+..+....+.-++-.+..-+.++.+.++-..+ ++..+...
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~---~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFP---FLQPLLLLLILRI 87 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHH---HHHHHHHHHHhhc
Confidence 445666666666666666533 34455555555555555555555566666667766664432 22211111
Q ss_pred ---hc--CCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHh-ccCChhHHHHHHHHHHhccccCHHHHHHHHHH
Q 002996 129 ---IS--DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAENIVER 202 (860)
Q Consensus 129 ---L~--D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l-~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~ 202 (860)
.. +....+..+.-..+.+++..+|. ... ..+..+-..| .+.++=.+...++.+..+++.+--+.....+.
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~---~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~v 163 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICCSRPD-HGV---DLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKV 163 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhChh-hHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 11 22334444444566666666554 111 2334444444 56777778888888887775544444555666
Q ss_pred HhhhhcC
Q 002996 203 VTPRLQH 209 (860)
Q Consensus 203 v~~~l~~ 209 (860)
+.+.+..
T Consensus 164 l~~~l~~ 170 (234)
T PF12530_consen 164 LQKKLSL 170 (234)
T ss_pred HHHhcCC
Confidence 6666643
No 167
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=78.11 E-value=50 Score=39.71 Aligned_cols=192 Identities=17% Similarity=0.277 Sum_probs=102.9
Q ss_pred cHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh----hhh
Q 002996 287 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV----NYV 362 (860)
Q Consensus 287 ~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~----~~v 362 (860)
...+|..=+|+|...++...+..|.+.+.. .+.+..- +...+..++.-...-...+++.+.+|++... .++
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~e---a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l 451 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDE---AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYL 451 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHH---HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHH---HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhH
Confidence 466888888899888888877777666654 2222222 3333333333221223567777777776432 356
Q ss_pred HHHHHHHHHHHHHh---C-----------cccHHHHHHHHHHhhc---cCCchHHHHHHHHHHhhcccccCCHHHHHHHH
Q 002996 363 VQEAIIVIKDIFRR---Y-----------PNTYESIIATLCESLD---TLDEPEAKASMIWIIGEYAERIDNADELLESF 425 (860)
Q Consensus 363 ~~e~i~~l~~i~~~---~-----------p~~~~~~i~~L~~~l~---~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~ 425 (860)
...++..+..++++ . ....+..+..+.+.+. +-.+.+-+..++-.||.-|.. .....+..+
T Consensus 452 ~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--~~i~~l~~~ 529 (618)
T PF01347_consen 452 RETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--ESIPVLLPY 529 (618)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--GGHHHHHTT
T ss_pred HHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--hhhHHHHhH
Confidence 66666666666553 1 1122233333443333 112233455667778877752 233344444
Q ss_pred HhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCH
Q 002996 426 LESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDP 491 (860)
Q Consensus 426 ~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~ 491 (860)
+..-...+..+|.+++.|+-++...+|.. .++.+..++.- ...++|||=-| |..|+..+|
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-v~~~l~~I~~n---~~e~~EvRiaA--~~~lm~~~P 589 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPEK-VREILLPIFMN---TTEDPEVRIAA--YLILMRCNP 589 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HHH-HHHHHHHHHH----TTS-HHHHHHH--HHHHHHT--
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcHH-HHHHHHHHhcC---CCCChhHHHHH--HHHHHhcCC
Confidence 43333457889999999999997777754 66667777664 35678888777 566776654
No 168
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=77.99 E-value=1.2e+02 Score=33.85 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=82.5
Q ss_pred ccCCCcchHHHHHHHHHHhcCCC---Cc------HHHHHHHHHHhhcCC-------CCHHHHhHHHHHhcCCC-hhhhHH
Q 002996 18 MQTENLELKKLVYLYLINYAKSQ---PD------LAILAVNTFVKDSQD-------PNPLIRALAVRTMGCIR-VDKITE 80 (860)
Q Consensus 18 ~~s~~~~~Krl~Yl~l~~~~~~~---~e------l~~L~in~l~kDl~~-------~n~~ir~lALr~l~~i~-~~e~~~ 80 (860)
+++.+-+.|.=+|+.+....+.. |+ -+-+.+..+++|+.+ .+..+..-|||+++.+- .++++.
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 35667778888999988876544 22 356778899999987 46677889999999753 455443
Q ss_pred --------HHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC-----CChhHHHHHHHHHHH
Q 002996 81 --------YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-----NNPMVVANAVAALAE 146 (860)
Q Consensus 81 --------~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D-----~d~~V~~~al~~l~~ 146 (860)
.++......+.+ +.|=.--++++.+++.-+..|..+.. +...++...+.+ ....++.-.+.++..
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~-~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTS-DRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccch-hhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 234444445544 44434445555555555667776653 455666555432 234555566666655
Q ss_pred HhhcCC
Q 002996 147 IEENSS 152 (860)
Q Consensus 147 i~~~~~ 152 (860)
+....|
T Consensus 161 ll~q~p 166 (372)
T PF12231_consen 161 LLSQFP 166 (372)
T ss_pred HHHHHH
Confidence 554433
No 169
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=77.69 E-value=23 Score=34.30 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=75.3
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHhhccC-CchHH--HHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 002996 367 IIVIKDIFRRYPNTYESIIATLCESLDTL-DEPEA--KASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTA 443 (860)
Q Consensus 367 i~~l~~i~~~~p~~~~~~i~~L~~~l~~~-~~~~~--~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta 443 (860)
...+..+++.++..+..+++++.+.+-.. ..+.. .....|++-.+...+.+...-+..+.+.+..-+..+-..++.|
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~A 118 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRA 118 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34567777778888888888888766322 22212 2344566666665666666677788888888889998899999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHH
Q 002996 444 TVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAY 481 (860)
Q Consensus 444 ~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~ 481 (860)
+.=+..-.+. .++.+.-+|+.+.+ +.+.+.|.-|.
T Consensus 119 l~PLi~~s~~--lrd~lilvLRKamf-~r~~~~R~~Av 153 (158)
T PF14676_consen 119 LLPLIKFSPS--LRDSLILVLRKAMF-SRELDARQMAV 153 (158)
T ss_dssp HHHHHTT-HH--HHHHHHHHHHHHTT--SSHHHHHHHH
T ss_pred HHHHHhcCHH--HHHHHHHHHHHHHc-cccHHHHHHHH
Confidence 9998877765 78889999998874 57788887664
No 170
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=77.00 E-value=2.6e+02 Score=37.13 Aligned_cols=84 Identities=24% Similarity=0.282 Sum_probs=47.3
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHH
Q 002996 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI 199 (860)
Q Consensus 120 ~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~l 199 (860)
.+.+.|.+++.-....+.--.+..|-||..+... ...+..|...+. .++-+.+-+|+.|..+.- +++...++
T Consensus 192 ~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~h------~~v~~~L~~ll~-~~~~L~~~iLd~Ls~L~L-s~~~l~~v 263 (1426)
T PF14631_consen 192 ELTDKLFEVLSIAPVELQKEIISSLPEILDDSQH------DEVVEELLELLQ-ENPELTVPILDALSNLNL-SPELLEEV 263 (1426)
T ss_dssp HHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGGH------HHHHHHHHHHHH-H-STTHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcchhH------HHHHHHHHHHHh-cCCchhhhHHHHHhcCCC-CHHHHHHH
Confidence 4667777777655556666777777777654321 123344444443 345567888999988754 34455666
Q ss_pred HHHHhhhhcCCC
Q 002996 200 VERVTPRLQHAN 211 (860)
Q Consensus 200 l~~v~~~l~~~n 211 (860)
.+.+...|.+..
T Consensus 264 r~~vl~~L~s~~ 275 (1426)
T PF14631_consen 264 REKVLEKLSSVD 275 (1426)
T ss_dssp HHHHHHSTTSS-
T ss_pred HHHHHHHHhcCC
Confidence 666666665443
No 171
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=76.97 E-value=89 Score=35.31 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=81.2
Q ss_pred CcHHHHHHHHHHHHHh-cCc------ccHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHH
Q 002996 286 DPIYVKMEKLEIMIKL-ASD------RNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLE 353 (860)
Q Consensus 286 d~~~Ik~~~L~lL~~l-~~~------~Nv~~Iv~eL~~y~~~-~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~ 353 (860)
+..+=+..||.=|..| |.. ++..+|+.-+.+-+.+ .|...+..+.+-|+.++..-+ .+.+-.+..+++
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 3455566666634443 332 3466677777777766 455556666666666655333 233333333333
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHh-CcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC------HHHHHHHHH
Q 002996 354 LIKIKVNYVVQEAIIVIKDIFRR-YPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------ADELLESFL 426 (860)
Q Consensus 354 ll~~~~~~v~~e~i~~l~~i~~~-~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~------~~~~l~~~~ 426 (860)
.-.+..+.+...+.+-...++.. .|.. .|..++..|-..++|.+. +++-++-+-.+.+.- -+|+.-.++
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~---~I~~i~~~Ilt~D~~~~~-~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ---CIVNISPLILTADEPRAV-AVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchh---HHHHHhhHHhcCcchHHH-HHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 33333333443333322222222 2322 233334434333445432 233344433333321 345555666
Q ss_pred hhCCCCcHHHHHHHHHHHHHHhhcCC
Q 002996 427 ESFPEEPAQVQLQLLTATVKLFLKKP 452 (860)
Q Consensus 427 ~~~~~e~~~v~~~iLta~~Kl~~~~p 452 (860)
+.|...+..||-..+-+++-++.+..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 77777777777777777777776654
No 172
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=76.21 E-value=3.5 Score=41.96 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=57.8
Q ss_pred HHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc
Q 002996 50 TFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED 118 (860)
Q Consensus 50 ~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~ 118 (860)
.+.+=+.|+|+..|-.|+-++......+-.+.+...+...+.|++.||||...-++..+++.+|+.+..
T Consensus 124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 124 LLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp HHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 444556789999999999888887766777888889999999999999999999999999999988763
No 173
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.06 E-value=1.6e+02 Score=34.26 Aligned_cols=125 Identities=25% Similarity=0.214 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC-----C-h---hhhHHHHHHHHHhhhcCCCh
Q 002996 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI-----R-V---DKITEYLCDPLQRCLKDDDP 95 (860)
Q Consensus 25 ~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i-----~-~---~e~~~~l~~~v~~~l~d~~~ 95 (860)
-|.+.-|.-..+++.-.+-.+-++|++.--=+ ||.+-.--|+++..+ . . .+++...+..+.+.+.+++-
T Consensus 28 rk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk--~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk 105 (885)
T COG5218 28 RKSLAELMEMLTAHEFSEEFLRVVNTILACKK--NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDK 105 (885)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhcccc--CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcch
Confidence 45556666666777666667778888764333 222323333333332 1 2 46788888889999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002996 96 YVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 96 ~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~ 151 (860)
-||++.+--+..+...-.++=+. .++++.|.+-+-|+.+.|..-|+.+|+......
T Consensus 106 ~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 106 KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 99999988888777644332111 256677777778999999999999998876553
No 174
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.93 E-value=24 Score=37.53 Aligned_cols=120 Identities=13% Similarity=0.207 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCC-CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh---hhHHHHHHHHHhhhcCCChHHHH
Q 002996 27 KLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD---KITEYLCDPLQRCLKDDDPYVRK 99 (860)
Q Consensus 27 rl~Yl~l~~~~~~~-~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~~---e~~~~l~~~v~~~l~d~~~~VRk 99 (860)
..-|+...+|-.-+ || .+.+...+-|.|.|=...+-+|.+|.++. .+ .|...++-.|.+.++....-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 56677777776543 44 56677888888888888888887777553 22 23355677778888899999999
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHhhc---CCChhHHHHHHHHHHHHhhc
Q 002996 100 TAAICVAKLYDINAELVEDRGFLESLKDLIS---DNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 100 ~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~---D~d~~V~~~al~~l~~i~~~ 150 (860)
+|++|+.-+|....+.+.+ ..-..+..||. +.|--|.-.|-.+|..+..+
T Consensus 148 aA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 9999999999877766653 33344445553 34555666666666665443
No 175
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=75.81 E-value=14 Score=34.65 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=51.1
Q ss_pred EEEEEEEeeCCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeecC
Q 002996 646 QIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQ 713 (860)
Q Consensus 646 ~I~~~~~~~~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~~ 713 (860)
-+.+-...+..-+.+.+.+.|.+...+.|+++++-. ...+++...++.-.|.|++....+..|.+..
T Consensus 59 YaEA~v~v~q~DIvLDvllvNqT~~tLqNl~vElat-~gdLklve~p~~~tL~P~~~~~i~~~iKVsS 125 (140)
T PF07718_consen 59 YAEAYVTVHQYDIVLDVLLVNQTNETLQNLTVELAT-LGDLKLVERPQPITLAPHGFARIKATIKVSS 125 (140)
T ss_pred EEEEEEEEEeeeEEEEEEEEeCChhhhhcEEEEEEe-cCCcEEccCCCceeeCCCcEEEEEEEEEEEe
Confidence 344444444556899999999999999999999974 3468887777766899999888777665543
No 176
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=75.09 E-value=26 Score=40.97 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=93.0
Q ss_pred CCCHHHHhHHHHHhcCC-------ChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHH
Q 002996 57 DPNPLIRALAVRTMGCI-------RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLK 126 (860)
Q Consensus 57 ~~n~~ir~lALr~l~~i-------~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~ 126 (860)
..+..+++.|+-++-+. ++.==-..+..++.+++.|++..|.+.+.-++..+.-...+. +-..++++.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 45677888887655443 221011466777888999999999999999998887544332 23357899999
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCC-CCchhccHHHHHHHH-HHhccCChhHHHHHHHHHHhccccC
Q 002996 127 DLISDNNPMVVANAVAALAEIEENSS-RPIFEITSHTLSKLL-TALNECTEWGQVFILDALSRYKAAD 192 (860)
Q Consensus 127 ~lL~D~d~~V~~~al~~l~~i~~~~~-~~~~~~~~~~~~~Ll-~~l~~~~~w~q~~il~~L~~~~~~~ 192 (860)
+++.|.++.+..+++-+|....-+.- ...+....+...+++ ...+++++=.|-..+++|+.+....
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999988765421 112333333333333 3345565557889999999887653
No 177
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=75.03 E-value=8.4 Score=38.17 Aligned_cols=119 Identities=19% Similarity=0.300 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhcCCC---Cc--HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------------------------
Q 002996 25 LKKLVYLYLINYAKSQ---PD--LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR------------------------- 74 (860)
Q Consensus 25 ~Krl~Yl~l~~~~~~~---~e--l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~------------------------- 74 (860)
.||..|-|+..++... +. -.-|. ..+ +.|+++.+|+.|+.+++.+-
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sLl-t~i---l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~ 93 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSLL-TCI---LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSS 93 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcchh-HHH---HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHH
Confidence 4788899999998776 11 11111 122 35889999999999998541
Q ss_pred -hhhhHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHh------hcccccccccHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002996 75 -VDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYD------INAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (860)
Q Consensus 75 -~~e~~~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~------~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~ 146 (860)
.-.|+..+...+..+|.+ .++-+---.+-|+.-+.. ..++++.+ ++..+..++.+.|+.|..+++.++.-
T Consensus 94 tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~--~v~~v~~~l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 94 TLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTE--VVTQVRPLLRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHH--HHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 112444555555556655 455554444555555543 34455553 77888889999999999998888876
Q ss_pred Hhh
Q 002996 147 IEE 149 (860)
Q Consensus 147 i~~ 149 (860)
+..
T Consensus 172 l~s 174 (182)
T PF13251_consen 172 LLS 174 (182)
T ss_pred HHc
Confidence 654
No 178
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=74.87 E-value=1.6e+02 Score=33.50 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=59.2
Q ss_pred HHHhHHHHHhcCCChhh----hHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhc-CCC
Q 002996 61 LIRALAVRTMGCIRVDK----ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNN 133 (860)
Q Consensus 61 ~ir~lALr~l~~i~~~e----~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~-D~d 133 (860)
.+=..-++.+.+-.... +-..++..+..++.+.+|.-|...-..+.++|.+.++.-.- ..+...+.+.+. ...
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccc
Confidence 44456667777655444 55677888899999999999999999999999988876431 123334444443 456
Q ss_pred hhHHHHHHHHHHHHhhc
Q 002996 134 PMVVANAVAALAEIEEN 150 (860)
Q Consensus 134 ~~V~~~al~~l~~i~~~ 150 (860)
+..++-++-.+..|...
T Consensus 189 ~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 189 HNGIAELLEILGSIING 205 (409)
T ss_dssp -STHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhc
Confidence 77778888888777654
No 179
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=74.68 E-value=18 Score=34.17 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=65.3
Q ss_pred HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhH-----HHHHHHHH
Q 002996 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT-----EYLCDPLQ 87 (860)
Q Consensus 16 ~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~~e~~-----~~l~~~v~ 87 (860)
++......+.-.-.-+-++-..+.+++-+--++..|+|-|+++||.++.+||..|-.+. .+.+- +.+...+.
T Consensus 12 kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~ 91 (140)
T PF00790_consen 12 KATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELV 91 (140)
T ss_dssp HHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred HHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHH
Confidence 34555555555666677888888888889999999999999999999999998876542 22222 34667777
Q ss_pred hhhcC--CChH--HHHHHHHHHHHHH
Q 002996 88 RCLKD--DDPY--VRKTAAICVAKLY 109 (860)
Q Consensus 88 ~~l~d--~~~~--VRk~A~~~l~kl~ 109 (860)
+++.+ ..+. ||+++...+....
T Consensus 92 ~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 92 KLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHccCCCCchhHHHHHHHHHHHHHH
Confidence 77765 2333 8888876665443
No 180
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=74.24 E-value=57 Score=38.12 Aligned_cols=167 Identities=22% Similarity=0.271 Sum_probs=91.5
Q ss_pred cCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhc-----------cCChhHHHHHHHHHHhccccCHHHHHH
Q 002996 130 SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN-----------ECTEWGQVFILDALSRYKAADAREAEN 198 (860)
Q Consensus 130 ~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~-----------~~~~w~q~~il~~L~~~~~~~~~~~~~ 198 (860)
.|.+..|...|-..|-.+... |+ ....+.+|+.... -.++-.|.+||.+|.+-... ......
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~-----~e-d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-a~~~~~ 319 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS-----LE-DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-ATSFPN 319 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC-----CC-CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-HhCCcc
Confidence 577777776666655444322 11 1244556655544 24678899999999864211 111235
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHh---hhc---cChHHHHHHHHHhhhHHHhhcC---------CChhHHHHHHHHHH
Q 002996 199 IVERVTPRLQHANCAVVLSAMILQQM---ELI---TSTDVVRNLCKKMAPPLVTLLS---------AEPEIQYVALRNIN 263 (860)
Q Consensus 199 ll~~v~~~l~~~n~aVv~~a~~~~~l---~~~---~~~~~~~~~~~~~~~~L~~lls---------~~~niry~aL~~l~ 263 (860)
++..+...+.+.+..-.+....+.++ ..+ ..+..++.+...+...+..++. .+.+.|-.+.++|.
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 66777777766633212211111222 111 1233333322222222223341 35679999999999
Q ss_pred HHHhhChhhhhccc---e-EEEeccCCcHHHHHHHHHHHHHhcC
Q 002996 264 LIVQRRPTILAHEI---K-VFFCKYNDPIYVKMEKLEIMIKLAS 303 (860)
Q Consensus 264 ~l~~~~p~~~~~~~---~-~~~~l~~d~~~Ik~~~L~lL~~l~~ 303 (860)
.|+++.|.+|...+ . .|..+.+++..+|.-.-+.|..|+.
T Consensus 400 ~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 400 LLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99999999885543 2 3344556667777776666666643
No 181
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=74.17 E-value=46 Score=31.15 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=65.3
Q ss_pred ccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHHhh
Q 002996 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQRC 89 (860)
Q Consensus 18 ~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~----~e~~-~~l~~~v~~~ 89 (860)
......+.-.-.-+.++-....+++-..-++..|+|=++++||.+.-+||+.|-.+. . .+++ ..+...+.++
T Consensus 9 Ts~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l 88 (133)
T smart00288 9 TSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKL 88 (133)
T ss_pred cCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHH
Confidence 333444455555677777788888888999999999999999999999998886542 1 2232 3456677777
Q ss_pred hcC--CChHHHHHHHHHHHHHHh
Q 002996 90 LKD--DDPYVRKTAAICVAKLYD 110 (860)
Q Consensus 90 l~d--~~~~VRk~A~~~l~kl~~ 110 (860)
+.+ ..+.||++++..+..-..
T Consensus 89 ~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 89 IKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HcCCCCcHHHHHHHHHHHHHHHH
Confidence 776 334488888877765544
No 182
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.90 E-value=8.6 Score=35.07 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=42.2
Q ss_pred HHHHHhhh-cCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 83 CDPLQRCL-KDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 83 ~~~v~~~l-~d~~~~VRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
+..+.++| .+.+|-+---|+.=+..+.+.+|+. +++.+..+.+.+|+.+.|+.|...|+.++..+.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34445555 3356666666777777777777753 333455667778888888888888887776654
No 183
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=73.74 E-value=77 Score=31.45 Aligned_cols=78 Identities=10% Similarity=0.014 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 002996 293 EKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVI 370 (860)
Q Consensus 293 ~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l 370 (860)
+++.-+..=.++.|++.++++|.......+.+....++..|-..|..-+.....|...+-.+-...+..+....+..+
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 344444444569999999999998876668889999999998888877766666666554443333313344444433
No 184
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=73.42 E-value=1.1e+02 Score=33.79 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhc-CCCCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh
Q 002996 43 LAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD 110 (860)
Q Consensus 43 l~~L~in~l~kDl-~~~n~~ir~lALr~l~~i~---~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~ 110 (860)
++--+++.|..=+ +..||.....++.+++.=. ..++-+.++..+++++.|+.+-|||.-+.+++.++.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 4444444444333 2367877777877777522 467778999999999999999999999999999987
No 185
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.86 E-value=87 Score=34.01 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCchhccH--------HHHHHHHHHhccCChhHHHHHHHHHHhccccCHHH----HHH
Q 002996 131 DNNPMVVANAVAALAEIEENSSRPIFEITS--------HTLSKLLTALNECTEWGQVFILDALSRYKAADARE----AEN 198 (860)
Q Consensus 131 D~d~~V~~~al~~l~~i~~~~~~~~~~~~~--------~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~----~~~ 198 (860)
.++..++...+.++.++...++. ..++.. ..+..+++.+...+++.+....++|+.+....+.. ...
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 45777888888888888777653 222211 14667777777778888888888888665432211 123
Q ss_pred HHHHHhhhhc----CCChHHHHHHHHHHHhhhccChHHHHHHH--HHhhhHHHhhc------C--CChhHHHHHHHHHHH
Q 002996 199 IVERVTPRLQ----HANCAVVLSAMILQQMELITSTDVVRNLC--KKMAPPLVTLL------S--AEPEIQYVALRNINL 264 (860)
Q Consensus 199 ll~~v~~~l~----~~n~aVv~~a~~~~~l~~~~~~~~~~~~~--~~~~~~L~~ll------s--~~~niry~aL~~l~~ 264 (860)
++..+...++ +.+..+...| +.++..+-..+..+..+ .+.++.|..++ + ....++|-++-++..
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~a--v~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl 224 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIA--VQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL 224 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHH--HHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHH--HHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence 4444444433 3232222222 11121111222223332 23344555655 2 245688988888887
Q ss_pred HH
Q 002996 265 IV 266 (860)
Q Consensus 265 l~ 266 (860)
+.
T Consensus 225 LS 226 (312)
T PF03224_consen 225 LS 226 (312)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 186
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.02 E-value=66 Score=34.98 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=57.6
Q ss_pred CCHHHHhHHHHHhcCC-ChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhH
Q 002996 58 PNPLIRALAVRTMGCI-RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (860)
Q Consensus 58 ~n~~ir~lALr~l~~i-~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V 136 (860)
..+....+-++.|..+ ..++.++++..-+-+++.+.. -|..+.....+ ..++. -|.+.++ ++...|..+
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~--~~~~~~~~~~~---~~~~~----~~~~fl~-ll~~~D~~i 121 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP--SRVELFLELAK---QDDSD----PYSPFLK-LLDRNDSFI 121 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SS--SSHHHHHHHHH----TTH------HHHHHH-H-S-SSHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHhcc---cccch----hHHHHHH-HhcCCCHHH
Confidence 3445566667788888 788888888888888777644 23333333322 22221 1556665 777778888
Q ss_pred HHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhcc----CChhHHHHHHHHHHhcc
Q 002996 137 VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE----CTEWGQVFILDALSRYK 189 (860)
Q Consensus 137 ~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~----~~~w~q~~il~~L~~~~ 189 (860)
..-|...+..+....+..........+..+++.+.+ .+.=.|-..+++|+.+.
T Consensus 122 ~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 122 QLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp HHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 888888888877665432222112344555544432 11112344455555544
No 187
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=71.78 E-value=1.6e+02 Score=35.19 Aligned_cols=250 Identities=16% Similarity=0.185 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchh
Q 002996 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (860)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~ 157 (860)
+-+.+...+++.+ +.+++||. ++.-+....-...-.+.--.|.+. +. .+|++=.+.=+..|..+.+.-|...
T Consensus 237 ~p~el~~~l~k~l-~~~~~~rp-~~~~l~~~~ff~D~~~~aLrfLD~---l~-~kdn~qKs~Flk~Ls~~ip~fp~rv-- 308 (700)
T KOG2137|consen 237 LPSELRESLKKLL-NGDSAVRP-TLDLLLSIPFFSDPGLKALRFLDD---LP-QKDNSQKSSFLKGLSKLIPTFPARV-- 308 (700)
T ss_pred CcHHHHHHHHHHh-cCCcccCc-chhhhhcccccCCchhhhhhhccc---cc-ccCcHHHHHHHHHHHHhhccCCHHH--
Confidence 3344555555544 56778888 555444443222111211112222 22 1444444444444555544433211
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHHhcccc-CHHH-HHHHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHH
Q 002996 158 ITSHTLSKLLTALNECTEWGQVFILDALSRYKAA-DARE-AENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRN 235 (860)
Q Consensus 158 ~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~-~~~~-~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~ 235 (860)
+..+.+..|+..+.. +=.+-.+|-++..+... +..+ ..+++-.+.+.++...+- ..-.++++.++.+...-....
T Consensus 309 ~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~-~~~l~i~e~mdlL~~Kt~~e~ 385 (700)
T KOG2137|consen 309 LFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPK-QALLFILENMDLLKEKTPPEE 385 (700)
T ss_pred HHHhhhhHHHHHhcc--ccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcc-cchhhHHhhHHHHHhhCChHH
Confidence 123445555555431 11222222222222111 1111 124444555555432221 001134555544432211223
Q ss_pred HHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhh-----hhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHH
Q 002996 236 LCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTI-----LAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQ 309 (860)
Q Consensus 236 ~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~-----~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~ 309 (860)
+.+++.+.|.+-+ ..+..+|-.+|+.+..+...-+.- +-+-++-+ |+.....++|.-.|..+-.++..--.-.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l-~~~tt~~~vkvn~L~c~~~l~q~lD~~~ 464 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL-AFKTTNLYVKVNVLPCLAGLIQRLDKAA 464 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc-hhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666555555 467889999998887776543321 12233434 6667788899888888877774333345
Q ss_pred HHHHHHHhhh---hccHHHHHHHHHHHHHHHHh
Q 002996 310 VLLEFKEYAT---EVDVDFVRKAVRAIGRCAIK 339 (860)
Q Consensus 310 Iv~eL~~y~~---~~d~~~~~~~i~~I~~la~k 339 (860)
++++++..+. ..|++++-..++....++.+
T Consensus 465 v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 465 VLDELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 6666665543 45667666666555554443
No 188
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=71.73 E-value=1.1e+02 Score=33.09 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=61.4
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCC--CcH----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--------hh
Q 002996 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQ--PDL----AILAVNTFVKDSQDPNPLIRALAVRTMGCIR--------VD 76 (860)
Q Consensus 11 f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~--~el----~~L~in~l~kDl~~~n~~ir~lALr~l~~i~--------~~ 76 (860)
+-++|..+..++-..|--++-.+...+..+ +|. ..=++..+.|.++.....-+.+|++.++-+. ..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 446666666666555555555555544332 221 2224567778887766667778877766432 46
Q ss_pred hhHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHH
Q 002996 77 KITEYLCDPLQRCLKDDD--PYVRKTAAICVAKLY 109 (860)
Q Consensus 77 e~~~~l~~~v~~~l~d~~--~~VRk~A~~~l~kl~ 109 (860)
++.+.+.+.+++.+.|.+ +-+|-.++.|+.-+.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~ 159 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICT 159 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 888999999999999854 445555555555443
No 189
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=70.11 E-value=2.5e+02 Score=33.86 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002996 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (860)
Q Consensus 80 ~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~ 153 (860)
...+..+..+..|+=+.||++|+-.++-|..--|+.-. .++-.+..-|.|.+.-+.+.|..+|..+....|.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~--~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN--NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 33444555555678899999999999999988888654 4667777788899989999999999988776653
No 190
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.72 E-value=2.7e+02 Score=34.08 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=53.0
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHh--hcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYD--INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~--~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~ 153 (860)
.......+.|+-+.+|--|+.-+.++++ .....+.....+....+.|.|.|+-|-.||+..+..++...+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence 4445556677888899999999999998 3334444446788889999999999999988855555554443
No 191
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.41 E-value=51 Score=31.33 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHHhhhcC-CCh
Q 002996 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQRCLKD-DDP 95 (860)
Q Consensus 25 ~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~----~e~~-~~l~~~v~~~l~d-~~~ 95 (860)
.-.-+-|-++-....+++-.--++..|+|=++++||.+.-+||..|-.+. . .+++ ..+...+.+++.+ .++
T Consensus 16 ~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~ 95 (144)
T cd03568 16 ENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHP 95 (144)
T ss_pred cCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCH
Confidence 33444555666777777778889999999999999999999988775431 1 2333 4566677777777 788
Q ss_pred HHHHHHHHHHHHHH
Q 002996 96 YVRKTAAICVAKLY 109 (860)
Q Consensus 96 ~VRk~A~~~l~kl~ 109 (860)
-||++....+....
T Consensus 96 ~Vk~kil~li~~W~ 109 (144)
T cd03568 96 TVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHHHH
Confidence 89988877666543
No 192
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.31 E-value=22 Score=40.71 Aligned_cols=130 Identities=21% Similarity=0.163 Sum_probs=85.1
Q ss_pred hHHHh-HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHh-hcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHh
Q 002996 11 FTDVV-NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQR 88 (860)
Q Consensus 11 f~~vi-~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~k-Dl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~ 88 (860)
+-+.| +++.+.|..+|--|-+.+-.-.--...+ =++.++.. ..+|.|..+|-.|..+|+-++..+ +.+.....+
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~--~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~tve 592 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAYVGTGNL--GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVGTVE 592 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc--hhHhhhheeecccCchHHHHHHHHheeeeEecC--cchhhHHHH
Confidence 33445 4788888888877766655432222221 13344433 367889999999999999876443 222333344
Q ss_pred hhc-CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 89 CLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 89 ~l~-d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
+|. +.|++||--.+.++.-.+.-..+.+ -++.|..|..|.+.-|..+|..++.-|.
T Consensus 593 lLs~shN~hVR~g~AvaLGiacag~G~~~----a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 593 LLSESHNFHVRAGVAVALGIACAGTGDKV----ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred HhhhccchhhhhhhHHHhhhhhcCCccHH----HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 444 5899999988888876555443332 5688888999999999887777666553
No 193
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=68.24 E-value=2e+02 Score=31.91 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=65.7
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhc
Q 002996 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLK 91 (860)
Q Consensus 14 vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~ 91 (860)
|++... .....||++--++-.|++.-|+++.-+++.-..-+.|.+--||--|+|-|...+.-+...-+.+.+.++|.
T Consensus 30 il~~~k-~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 30 ILKAVK-GTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHhh-cchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 444433 34678999999999999999999999999887777888999999999999998877888888888888887
No 194
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=67.83 E-value=4.5e+02 Score=35.82 Aligned_cols=128 Identities=15% Similarity=0.209 Sum_probs=85.6
Q ss_pred CcchHHHHHHHHHHhcCCC---CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-----hhh-----hHHHHHHHHHh
Q 002996 22 NLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDK-----ITEYLCDPLQR 88 (860)
Q Consensus 22 ~~~~Krl~Yl~l~~~~~~~---~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-----~~e-----~~~~l~~~v~~ 88 (860)
-|.+.||+-++..+.-+.. +.+=-.+.+.|.+=-.++|..++.-|+..|-.+. ..| .-..+..+...
T Consensus 1110 ~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~ 1189 (1780)
T PLN03076 1110 VFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVI 1189 (1780)
T ss_pred hhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHH
Confidence 4667777777666554322 2333345566777666778888877777654432 223 22456666666
Q ss_pred hhcC-CChHHHHHHHHHHHHHHhhcccccccccHHHHHH---HhhcCCChhHHHHHHHHHHHHhhc
Q 002996 89 CLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLESLK---DLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 89 ~l~d-~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~---~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
.+.+ .+.-||...+-|+..|.....+.+.. +|...+. ....|+++.++..|+-.+..|..+
T Consensus 1190 im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1190 VMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 6654 78899999999999999887777764 7865443 344688888888888888777654
No 195
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=67.68 E-value=6.6 Score=28.64 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHH
Q 002996 80 EYLCDPLQRCLKDDDPYVRKTAAIC 104 (860)
Q Consensus 80 ~~l~~~v~~~l~d~~~~VRk~A~~~ 104 (860)
+.+...|.+.+.|++|.||++|+-.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4677788999999999999988753
No 196
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=67.25 E-value=33 Score=32.47 Aligned_cols=49 Identities=31% Similarity=0.531 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q 002996 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (860)
Q Consensus 79 ~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~ 132 (860)
.+.+...+.++|.+.++-|.|.|.-|++. | ++|.+.+ +.+.|..|++|.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~-~-k~~~l~p---Y~d~L~~Lldd~ 63 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLT-W-KDPYLTP---YKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-h-CcHHHHh---HHHHHHHHcCcc
Confidence 36777778899999999999999999986 2 3454443 678888888775
No 197
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=67.14 E-value=11 Score=42.13 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhcC---CCCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 002996 43 LAILAVNTFVKDSQ---DPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICV 105 (860)
Q Consensus 43 l~~L~in~l~kDl~---~~n~~ir~lALr~l~~i~---~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l 105 (860)
+.-...+.+.-||+ +..|.+|+-|++++...| .++....+++.+.++|.+++.-|+--||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 34444556666776 678999999999998766 5778888999999999999999999999986
No 198
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=66.85 E-value=6.5 Score=39.43 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=55.4
Q ss_pred hhcCCCCHHHHhHHHHHhcCCChh-hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHH
Q 002996 53 KDSQDPNPLIRALAVRTMGCIRVD-KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (860)
Q Consensus 53 kDl~~~n~~ir~lALr~l~~i~~~-e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~ 124 (860)
+=..|+|+..|-.|+-++...... .-.+.+...+..++.|.+.||||..+-++..+++.+|+.+.+ |++.
T Consensus 112 ~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~--~l~~ 182 (197)
T cd06561 112 EWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA--FLEK 182 (197)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH--HHHH
Confidence 334678999988888877765443 556778888899999999999999999999999999987653 4443
No 199
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.86 E-value=23 Score=41.42 Aligned_cols=127 Identities=18% Similarity=0.166 Sum_probs=88.2
Q ss_pred cCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCC--CHHHHhHHHHHh---cCC---Chhh----hHHHHHHHH
Q 002996 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP--NPLIRALAVRTM---GCI---RVDK----ITEYLCDPL 86 (860)
Q Consensus 19 ~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~--n~~ir~lALr~l---~~i---~~~e----~~~~l~~~v 86 (860)
.+..+..|-|.||.=+..+....+-. +..+.-.+.++ |.-.|.+|+.++ ..+ ..+. +.+.+...+
T Consensus 295 a~~~lq~kIL~~L~kS~~Aa~~~~~~---~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 295 ASPRLQEKILSLLSKSVIAATSFPNI---LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred CCHHHHHHHHHHHHHhHHHHhCCccH---HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Confidence 34556678888887777766553322 23334466777 788999999999 433 2333 335555555
Q ss_pred Hhhhc--------CCChHHHHHHHHHHHHHHhhccccc-ccccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 87 QRCLK--------DDDPYVRKTAAICVAKLYDINAELV-EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 87 ~~~l~--------d~~~~VRk~A~~~l~kl~~~~p~~~-~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
.+.+. ..+.-.|..|..|++.+.+..|..+ .+-+++..+-+.|.+.++.|..+.-.+|..+.
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 55663 2577899999999999999999998 44466777777778888888877766666654
No 200
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=65.73 E-value=51 Score=40.21 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=85.7
Q ss_pred HHhhcC-CCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHH-HHhh--cccccccccHHHHHH
Q 002996 51 FVKDSQ-DPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAK-LYDI--NAELVEDRGFLESLK 126 (860)
Q Consensus 51 l~kDl~-~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~k-l~~~--~p~~~~~~~~~~~l~ 126 (860)
+.|-|- -.+|..-.+|.+.|..+..|++-.......-=...| ++-++|.+-.+-.+ +|+. .-+ .++.+.
T Consensus 801 v~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D-~~~~~~r~~~a~~riLykQRfF~~------ivP~l~ 873 (1030)
T KOG1967|consen 801 VTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSD-SNPLLKRKGHAEPRILYKQRFFCD------IVPILV 873 (1030)
T ss_pred HHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhcc-ChHHhhhccccchhHHHHHHHHHh------hHHHHH
Confidence 445443 245777889999999999988776655444444445 44567777776664 3432 222 456666
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCC-chhccHHHHHHHHHHhccCChhHHHHHHHHHHhccc
Q 002996 127 DLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA 190 (860)
Q Consensus 127 ~lL~D~d~~V~~~al~~l~~i~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~ 190 (860)
+...-...++..+-+.+|..+..+-|.+ ..+-.+..++-|++.|..++.-.++..++++.....
T Consensus 874 ~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 874 SKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 6665334445556666777766665643 344556677888888888888888888888776543
No 201
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=65.17 E-value=10 Score=36.95 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 93 DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 93 ~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
.---+||.|..|++.++...++.+.-..|.+++..-|.| ++.+..-+...+..+....|
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH
Confidence 344699999999999999888777656788999999999 77777766666666655443
No 202
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=64.93 E-value=1.9e+02 Score=33.74 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=15.4
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002996 461 QVVLNNATVETDNPDLRDRAYIYWRLLS 488 (860)
Q Consensus 461 ~~~l~~~~~~s~~~evrdRA~~y~~ll~ 488 (860)
..+++.|. |.+.-.|-+.|-|.|.
T Consensus 202 p~IlERar----Dv~~anRr~vY~r~Lp 225 (885)
T COG5218 202 PCILERAR----DVSGANRRMVYERCLP 225 (885)
T ss_pred hhHHHHhh----hhhHHHHHHHHHHHhh
Confidence 34566542 4566677778888775
No 203
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=64.88 E-value=73 Score=31.55 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhh-ccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCc
Q 002996 80 EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (860)
Q Consensus 80 ~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~-~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~ 155 (860)
+.+.+-..++|.. .+|| |=-|..++..+.+. .++.+-. .+++.-|+..|+.+|+.|+.+++.+|..+....+. .
T Consensus 37 ~~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~-v 114 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM-V 114 (183)
T ss_pred hhHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh-h
Confidence 4556666677766 6666 57777888888777 5544321 24667778899999999999999999888443221 0
Q ss_pred hhccHHHHHHHHHHh
Q 002996 156 FEITSHTLSKLLTAL 170 (860)
Q Consensus 156 ~~~~~~~~~~Ll~~l 170 (860)
=+-+.+.+++|+-.+
T Consensus 115 G~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 115 GEALVPYYRQLLPVL 129 (183)
T ss_pred hHHHHHHHHHHHHHH
Confidence 122345566666544
No 204
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=64.86 E-value=65 Score=29.93 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=60.9
Q ss_pred cccccccCCCCChHHHHHHhccCCCCccceeecCCCccCCH-HHHHHHHHhcCceeeeecc-CCCCceEE---EEEEecC
Q 002996 744 LHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNV-EATLDLLAASNMFFIAKRK-NANQDVFY---FSAKIPP 818 (860)
Q Consensus 744 l~~~~~~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~~~~-~~~~~~l~~~~~~~v~~~~-~~~~~~~~---~s~~~~~ 818 (860)
+-... +|..++..+|.+.|....= |-...+...- .+. +-+...++.-|+..+.... ..+...++ ++|++.-
T Consensus 14 ImDyI-~Pa~~~~~~FR~mW~eFEW--ENKi~V~t~~-~dl~~yl~~i~k~tnM~~Ltp~~~l~~~~~fl~~Nlya~S~f 89 (129)
T PF14806_consen 14 IMDYI-KPATCSDEEFRSMWAEFEW--ENKISVNTNI-TDLREYLDHIMKSTNMKCLTPESALSGDCGFLSANLYARSIF 89 (129)
T ss_pred HHHhc-CcccCCHHHHHHHHHhhee--eeeEEEecCC-CCHHHHHHHHHHhcCcceeccccccCCCCCEEEEEEEEEecc
Confidence 33344 6999999999999988743 2223333221 244 4455566777887776421 12222111 4466666
Q ss_pred CccEEEEEEeec-CCCc--eEEEEecCCCchHHHH
Q 002996 819 GVPFLIELTTVI-GNPG--VKCAIKTPNPDIASLF 850 (860)
Q Consensus 819 ~~~~Lv~l~~~~-~~~~--~~ltvrs~~~~v~~~l 850 (860)
|-.+|+-+.+.. +++. -.+-+||...+++--+
T Consensus 90 gedaL~Nlsiek~~~~~i~G~vRIRSk~qgia~sl 124 (129)
T PF14806_consen 90 GEDALANLSIEKQADGKISGHVRIRSKTQGIALSL 124 (129)
T ss_pred CCeeEEEEEEEecCCCeEEEEEEEeeCCcChhhhh
Confidence 788898887765 2233 3567788777766433
No 205
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=62.08 E-value=12 Score=26.87 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=20.7
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 119 RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 119 ~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
.+.++.|.++|.+.|+.|+.+|+.+|..++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456677777777777777777777776653
No 206
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=61.40 E-value=2.2e+02 Score=34.15 Aligned_cols=68 Identities=19% Similarity=0.394 Sum_probs=42.2
Q ss_pred HHHHHhhhHHHhhcC-CCh-hHHHHHHHHHHHHHhhCh-hhhhcc-ce-EEEeccCCcHHHHHHHHHHHHHhc
Q 002996 235 NLCKKMAPPLVTLLS-AEP-EIQYVALRNINLIVQRRP-TILAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLA 302 (860)
Q Consensus 235 ~~~~~~~~~L~~lls-~~~-niry~aL~~l~~l~~~~p-~~~~~~-~~-~~~~l~~d~~~Ik~~~L~lL~~l~ 302 (860)
....++.+.|...++ .++ .+..+.++.+..|..+-| +-+..+ +. ++.|+.+++..|.-++|.++-..+
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~ 417 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVA 417 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHH
Confidence 344455666666665 333 577777888888887643 334333 33 345666777888888777766543
No 207
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=60.13 E-value=17 Score=25.92 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=24.3
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~ 109 (860)
.++.+.++|.+.++.||+.|+-|+..+-
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4778899999999999999999988763
No 208
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=59.03 E-value=1e+02 Score=31.23 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=47.8
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~ 153 (860)
.+.+.+-..|.+.++||.|+.+.++.-+. .+ .. .+...+..++.|++--|.-+.-=+|-++.+.++.
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~-~~-~~--~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEK-TD-TD--LLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHc-cC-HH--HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 35567777899999999999987774432 22 11 2556677788888877777766678888877654
No 209
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.88 E-value=4.7e+02 Score=32.69 Aligned_cols=115 Identities=20% Similarity=0.261 Sum_probs=74.8
Q ss_pred CCHHHHhHHHHHhcCCCh---------hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh---cccccccccHHHHH
Q 002996 58 PNPLIRALAVRTMGCIRV---------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVEDRGFLESL 125 (860)
Q Consensus 58 ~n~~ir~lALr~l~~i~~---------~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~---~p~~~~~~~~~~~l 125 (860)
.|+.-.--|||.+|++.. .+|--.+.+.|.-.++++.-|.|.+||-.+.++... +|.... ...+..
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t 507 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELT 507 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHH
Confidence 455556678998888752 233345677888888999999999999999988743 344333 244555
Q ss_pred HHhhc-CCChhHHHHHHHHHHHHhhcCCC--C-chhccHHHHHHHHHHhccCC
Q 002996 126 KDLIS-DNNPMVVANAVAALAEIEENSSR--P-IFEITSHTLSKLLTALNECT 174 (860)
Q Consensus 126 ~~lL~-D~d~~V~~~al~~l~~i~~~~~~--~-~~~~~~~~~~~Ll~~l~~~~ 174 (860)
.++|. |.+--|..-|.-||.-...+... . .-..+++...+|++..++..
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 55665 88877877666666655444321 1 23345566677776665543
No 210
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.86 E-value=2.2e+02 Score=34.88 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=110.7
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Q 002996 310 VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESII 385 (860)
Q Consensus 310 Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~----~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i 385 (860)
.++|-+.++.+.-..++...+..+..++++-.+ ..+..+++.++.++....||.-.+|..+.-+...||+ .++
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e---~il 804 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE---DIL 804 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch---hhH
Confidence 466667777777777888999999999984222 3457899999999999999999999866666666885 577
Q ss_pred HHHHHhhcc-CCch--HH--H--HHHHHHHhhcccccCC-HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCC---CC
Q 002996 386 ATLCESLDT-LDEP--EA--K--ASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP---TE 454 (860)
Q Consensus 386 ~~L~~~l~~-~~~~--~~--~--~~~~wilGEy~~~i~~-~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p---~~ 454 (860)
+.|.+...+ -..+ +- + +++.-++-+-|+++.. -.-++..|+....+-...-|+.-+..+.-+..... ++
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 777774432 1122 11 1 2333333333333221 11344445544443344557777777666654332 22
Q ss_pred ChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002996 455 GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 489 (860)
Q Consensus 455 ~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~ 489 (860)
.+.+.+..++...+. +..+-+|--|.-..+.+-.
T Consensus 885 ~~~ev~~~Il~l~~~-d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 885 FFHEVLQLILSLETT-DGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHHHcc-CCchhhHHHHHHHHHHHHh
Confidence 245666777777664 4678888888877776644
No 211
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=57.73 E-value=15 Score=43.31 Aligned_cols=97 Identities=16% Similarity=0.289 Sum_probs=40.9
Q ss_pred HHHhHhccCCCcchHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh----hhhHHHHHHH
Q 002996 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPD--LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV----DKITEYLCDP 85 (860)
Q Consensus 12 ~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~e--l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~----~e~~~~l~~~ 85 (860)
+.+++++.+.|-..|-+.--|+..|.+.=++ +---+...+..-+.|.|+.+|..+|++|..+.. ..+--.+...
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~ 412 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRY 412 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHH
Confidence 3344455555544444444444444332211 111223344444445555555555555544321 1122333333
Q ss_pred HHhhhcCCChHHHHHHHHHHHHH
Q 002996 86 LQRCLKDDDPYVRKTAAICVAKL 108 (860)
Q Consensus 86 v~~~l~d~~~~VRk~A~~~l~kl 108 (860)
+.+.-.|.++-+|-+...|+.|+
T Consensus 413 ~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 413 LARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred HHhhCccccCcccccceeeeccc
Confidence 44444444455555555555544
No 212
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.68 E-value=96 Score=29.32 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 98 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 98 Rk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
--.+.+-+.-+....|+... +-+..|.+-|+.+||.|+.-|+.+|..+.++ |+.
T Consensus 18 dw~~ileicD~In~~~~~~k--~a~rai~krl~~~n~~v~l~AL~LLe~~vkN-CG~ 71 (139)
T cd03567 18 DWEAIQAFCEQINKEPEGPQ--LAVRLLAHKIQSPQEKEALQALTVLEACMKN-CGE 71 (139)
T ss_pred CHHHHHHHHHHHHcCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-cCH
Confidence 34566667767766666444 3667788889999999999999999777765 543
No 213
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.62 E-value=4.3e+02 Score=32.20 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=111.1
Q ss_pred ccCCCcchHHHHHHHHHHhcCCCCcH-----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh---------------
Q 002996 18 MQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK--------------- 77 (860)
Q Consensus 18 ~~s~~~~~Krl~Yl~l~~~~~~~~el-----~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e--------------- 77 (860)
-.|.=++.||=+-+++.-+++..-+. +--.+++|++|-. |+.+...||.+++.+...+
T Consensus 32 essTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~ 109 (970)
T KOG0946|consen 32 ESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDL 109 (970)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHH
Confidence 34566889999999999998876442 2345788899877 5678899999999874322
Q ss_pred ---hH------HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc-----ccHHHHHHHhhcCCChhHHHHHHHH
Q 002996 78 ---IT------EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-----RGFLESLKDLISDNNPMVVANAVAA 143 (860)
Q Consensus 78 ---~~------~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~-----~~~~~~l~~lL~D~d~~V~~~al~~ 143 (860)
++ +..+..+...+.+.+-|||+.|+--+-.+.+.-|-.+.+ +.-+..+..+|.|..--+.-.|+.+
T Consensus 110 g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLl 189 (970)
T KOG0946|consen 110 GLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILL 189 (970)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHH
Confidence 11 345667778888899999999999888888877754432 2346788899999877777888889
Q ss_pred HHHHhhcCCCC-chhccHHHHHHHHHHhcc
Q 002996 144 LAEIEENSSRP-IFEITSHTLSKLLTALNE 172 (860)
Q Consensus 144 l~~i~~~~~~~-~~~~~~~~~~~Ll~~l~~ 172 (860)
|.++.+..+.- .+......+.+|++++.+
T Consensus 190 L~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 190 LSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 99998776531 222334566777777753
No 214
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=57.58 E-value=22 Score=35.20 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh
Q 002996 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI 129 (860)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL 129 (860)
+++.++.+++++|.++++-|.++++.++-++...++-.-+ .+.+...++|
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~--aLvPyyrqLL 126 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE--ALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHH
Confidence 4578899999999999999999999999999766554333 3667666665
No 215
>PF05536 Neurochondrin: Neurochondrin
Probab=57.53 E-value=3.9e+02 Score=31.64 Aligned_cols=235 Identities=12% Similarity=0.119 Sum_probs=109.7
Q ss_pred cccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHH
Q 002996 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPL 86 (860)
Q Consensus 7 ~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v 86 (860)
.+..+-.+++++++++=+.|-.|-+-+..+.+.++.... .-..+. .++ +. +-+
T Consensus 3 ~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~-~~~~v~---------------~ai---g~--------~Fl 55 (543)
T PF05536_consen 3 QSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQ-TRRRVF---------------EAI---GF--------KFL 55 (543)
T ss_pred chHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHH-HHHHHH---------------Hhc---Ch--------hHH
Confidence 345667888899999866666676666666665443110 000000 111 11 112
Q ss_pred HhhhcC------CChHHHHHHHHHHHHHHhhcccccccccHHH---HHHHhhcCCCh-hHHHHHHHHHHHHhhcCCCCch
Q 002996 87 QRCLKD------DDPYVRKTAAICVAKLYDINAELVEDRGFLE---SLKDLISDNNP-MVVANAVAALAEIEENSSRPIF 156 (860)
Q Consensus 87 ~~~l~d------~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~---~l~~lL~D~d~-~V~~~al~~l~~i~~~~~~~~~ 156 (860)
.|+|.. .++..-+.-+++++..|-.+|+...+.+++. .+.+.+...+. .++.-|+..|..|.....+..-
T Consensus 56 ~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~a 135 (543)
T PF05536_consen 56 DRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKA 135 (543)
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHH
Confidence 333332 2556667777777777777777665544543 34444444333 6777777777777644322211
Q ss_pred hccHHHHHHHHHHhccCChhHHHHHHHHHHhc----cc----cCHHHHHHHHHHHhhhhcCCChHHHHHH--HHHHHhhh
Q 002996 157 EITSHTLSKLLTALNECTEWGQVFILDALSRY----KA----ADAREAENIVERVTPRLQHANCAVVLSA--MILQQMEL 226 (860)
Q Consensus 157 ~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~----~~----~~~~~~~~ll~~v~~~l~~~n~aVv~~a--~~~~~l~~ 226 (860)
-+-...+..|+..+.. .+...-..++++... .. ........++..+....+.....-.++. .+-.++..
T Consensus 136 Ll~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 136 LLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 1112234455555443 333333333333322 11 1112222333333333322111111222 11122221
Q ss_pred cc----ChHHHHHHHHHhhhHHHhhc-CC-ChhHHHHHHHHHHHHHhhC
Q 002996 227 IT----STDVVRNLCKKMAPPLVTLL-SA-EPEIQYVALRNINLIVQRR 269 (860)
Q Consensus 227 ~~----~~~~~~~~~~~~~~~L~~ll-s~-~~niry~aL~~l~~l~~~~ 269 (860)
.. ...........+...+..+| ++ .+.-|-.+|.....+.+..
T Consensus 215 ~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 215 SPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred CCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 10 00011233344455566666 43 5678888888888887764
No 216
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=57.50 E-value=64 Score=37.95 Aligned_cols=84 Identities=19% Similarity=0.268 Sum_probs=67.1
Q ss_pred CHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHH
Q 002996 59 NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (860)
Q Consensus 59 n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~ 138 (860)
.+-+-|.||-+||-=...+|+ ...+-..+.-.+|.+||..=+|+.-++-.+|+. ...+.|.+...|.|+.|..
T Consensus 621 ~~avLgiAliAMgeeig~eM~---lR~f~h~l~yge~~iRravPLal~llsvSNPq~----~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 621 ELAVLGIALIAMGEEIGSEMV---LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV----NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred cchhhhhhhhhhhhhhhhHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc----hHHHHHHHhccCcchHHHH
Confidence 356778888888864444444 334556666799999999999999999999986 4789999999999999999
Q ss_pred HHHHHHHHHhh
Q 002996 139 NAVAALAEIEE 149 (860)
Q Consensus 139 ~al~~l~~i~~ 149 (860)
||+.++--|..
T Consensus 694 naIfamGLiGA 704 (878)
T KOG2005|consen 694 NAIFAMGLIGA 704 (878)
T ss_pred HHHHHhccccC
Confidence 99999877754
No 217
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=57.19 E-value=21 Score=32.54 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=40.3
Q ss_pred EEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeecCCCCCCCCCcceEEEEe
Q 002996 659 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVK 729 (860)
Q Consensus 659 ~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~~~~~~~~~~~~l~~~~~ 729 (860)
.+.+.+.||+.++.+ |.+.+...+ |+++......-.|+||+.....+-|..+....... ...+.|.+.
T Consensus 34 ~Y~lkl~Nkt~~~~~-~~i~~~g~~-~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~~~~~-~~~i~f~v~ 101 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRT-YTISVEGLP-GAELQGPENTITVPPGETREVPVFVTAPPDALKSG-STPITFTVT 101 (118)
T ss_dssp EEEEEEEE-SSS-EE-EEEEEES-S-S-EE-ES--EEEE-TT-EEEEEEEEEE-GGG-SSS-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEE-EEEEEecCC-CeEEECCCcceEECCCCEEEEEEEEEECHHHccCC-CeeEEEEEE
Confidence 588999999999877 788877533 66663322333789999999999888886553321 224666664
No 218
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=57.04 E-value=3.6e+02 Score=31.15 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=47.8
Q ss_pred HHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHHhhccc--ccccccHHHHHHHhhcCCCh
Q 002996 61 LIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAE--LVEDRGFLESLKDLISDNNP 134 (860)
Q Consensus 61 ~ir~lALr~l~~i~---~~e~~~~l~~~v~~~l~d~-~~~VRk~A~~~l~kl~~~~p~--~~~~~~~~~~l~~lL~D~d~ 134 (860)
.-|.-|++.++..- ..+-++.+-...+.++.+. .+.+|+.|..-+..+.+..-+ ...+..|...+..-=.|.|-
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~ 84 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDF 84 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhH
Confidence 34666776666431 1245567777888888875 556888888777777765444 12223444444333223343
Q ss_pred hHHHHHHHHHH
Q 002996 135 MVVANAVAALA 145 (860)
Q Consensus 135 ~V~~~al~~l~ 145 (860)
.-...|+.+|.
T Consensus 85 ~~~l~aL~~LT 95 (464)
T PF11864_consen 85 DLRLEALIALT 95 (464)
T ss_pred HHHHHHHHHHH
Confidence 44445544444
No 219
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.75 E-value=4.5e+02 Score=32.18 Aligned_cols=290 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhhcCC----CCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc
Q 002996 42 DLAILAVNTFVKDSQD----PNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE 114 (860)
Q Consensus 42 el~~L~in~l~kDl~~----~n~~ir~lALr~l~~i~---~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~ 114 (860)
++.--.+|.+.-||.+ .+|..++-|++.+--.| .++.+-.++|.+.+.|...++-|-+-||.|+=|+......
T Consensus 452 dv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 452 DVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred cHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Q ss_pred ----ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhcc-
Q 002996 115 ----LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK- 189 (860)
Q Consensus 115 ----~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~- 189 (860)
+....+..+.+..+| ..++.........+ +|++--.|+|++....
T Consensus 532 ~~~~if~~~~iap~~~~ll-----------~nLf~a~s~p~~~E-------------------neylmKaImRii~i~~~ 581 (960)
T KOG1992|consen 532 SNAKIFGAEDIAPFVEILL-----------TNLFKALSLPGKAE-------------------NEYLMKAIMRIISILQS 581 (960)
T ss_pred ccccccchhhcchHHHHHH-----------HHHHHhccCCcccc-------------------cHHHHHHHHHHHHhCHH
Q ss_pred ---ccCHHHHHHHHHHHhhhhcC-CCh---HHHHHH--HHHHHhhhccChHHHHHHHHHhhhHHHhhcCCCh-hHHHHHH
Q 002996 190 ---AADAREAENIVERVTPRLQH-ANC---AVVLSA--MILQQMELITSTDVVRNLCKKMAPPLVTLLSAEP-EIQYVAL 259 (860)
Q Consensus 190 ---~~~~~~~~~ll~~v~~~l~~-~n~---aVv~~a--~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls~~~-niry~aL 259 (860)
|.-+.-...+.+.+...-++ +|| .-.+|+ +++...... .+..+.++...+.+.+...++.|- |.-=.++
T Consensus 582 ~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~-~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvf 660 (960)
T KOG1992|consen 582 AIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKA-NPSAVSSLEEALFPVFQTILSEDIQEFIPYVF 660 (960)
T ss_pred hhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHH--HHHHHHHHHHH
Q 002996 260 RNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV--RKAVRAIGRCA 337 (860)
Q Consensus 260 ~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~--~~~i~~I~~la 337 (860)
+.+..++..+...+.+.+..++-.--.|..-++ ..|+..++.-|..++......+. .++..-+|.+.
T Consensus 661 Qlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r-----------~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifq 729 (960)
T KOG1992|consen 661 QLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKR-----------SGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQ 729 (960)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhh-----------cCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHH
Q ss_pred Hhhh-----hhHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHH
Q 002996 338 IKLE-----RAAERCISVLLELIKIK--VNYVVQEAIIVIKDI 373 (860)
Q Consensus 338 ~k~~-----~~~~~~v~~ll~ll~~~--~~~v~~e~i~~l~~i 373 (860)
.-.+ ...-..+++++..+... ..|..+=..-.+..+
T Consensus 730 kLiaSka~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rl 772 (960)
T KOG1992|consen 730 KLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRL 772 (960)
T ss_pred HHhcCcccchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHH
No 220
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.07 E-value=98 Score=34.35 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=53.7
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
.++..-+.|.+.-|||.|...+..++..+|+.+.- ...++.+..+..|.+..|.....-++..+....+
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc
Confidence 34555678999999999999999999988987652 2356677778889999999988888877554433
No 221
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=56.01 E-value=46 Score=29.59 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCCCCChHHH------HHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhhc
Q 002996 437 QLQLLTATVKLFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLA 500 (860)
Q Consensus 437 ~~~iLta~~Kl~~~~p~~~~~~~------i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~~~~~~~v~~ 500 (860)
|..++..++-+..+++. .++. +.-+|+.|..|..||-+|++|.+-.|-|-.+.....++|-.
T Consensus 3 K~~lvrlianl~~~~~~--~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE--VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44566666666666664 3443 45578888889999999999999999887766666666643
No 222
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=55.92 E-value=95 Score=38.26 Aligned_cols=132 Identities=15% Similarity=0.194 Sum_probs=97.5
Q ss_pred CCcchHHHHHHHHHHhcCCC----CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChH
Q 002996 21 ENLELKKLVYLYLINYAKSQ----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPY 96 (860)
Q Consensus 21 ~~~~~Krl~Yl~l~~~~~~~----~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~ 96 (860)
.|+....+.-.++..+++.. ...+..+.|.|..-+.+..+.+|-.++.++=.+...--...+.+.|..++.+.+|-
T Consensus 307 aN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~ 386 (815)
T KOG1820|consen 307 ANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQ 386 (815)
T ss_pred cchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChh
Confidence 44455555555555555443 33677888899999999888888887777766665555567788889999999999
Q ss_pred HHHHHHHHHHHHHhhcc-ccccc---ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 97 VRKTAAICVAKLYDINA-ELVED---RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 97 VRk~A~~~l~kl~~~~p-~~~~~---~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
+|--....+-+.++..+ ..+.. ...++.+....+|++.-|..+|..++..+....+
T Consensus 387 ~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 387 IKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred hHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 99998888888888765 33322 2567788888899999999999888887765543
No 223
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=55.89 E-value=23 Score=36.89 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=44.8
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhcccccc------c-----ccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 89 CLKDDDPYVRKTAAICVAKLYDINAELVE------D-----RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 89 ~l~d~~~~VRk~A~~~l~kl~~~~p~~~~------~-----~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
++.|.++.|.|+|+.|...+|+.--+.+. + ..+.+.+..++++.+++|..+|+..+..+.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vI 71 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVI 71 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 47889999999999999999986333221 0 134556667888889999999999887754
No 224
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.74 E-value=2.9e+02 Score=29.72 Aligned_cols=61 Identities=26% Similarity=0.289 Sum_probs=44.9
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChh---hh---HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh
Q 002996 49 NTFVKDSQDPNPLIRALAVRTMGCIRVD---KI---TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (860)
Q Consensus 49 n~l~kDl~~~n~~ir~lALr~l~~i~~~---e~---~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~ 111 (860)
+.+.+=+.++||.+|..|++.+..+... .+ -+..++.+.+++.+..+ -+-|+.++.++.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 4556677889999999999888777654 11 15677888999998877 56677777777654
No 225
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=55.37 E-value=15 Score=33.74 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=34.9
Q ss_pred hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccc
Q 002996 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV 116 (860)
Q Consensus 75 ~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~ 116 (860)
++.-+..+.+.+.+-|.+++|+|+.||+-.+-++.+..++.+
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f 73 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF 73 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH
Confidence 445577888888999999999999999999999988876543
No 226
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=55.20 E-value=1.1e+02 Score=34.10 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=68.5
Q ss_pred HHHhhhcCCChHHHHHHHHHHH-HHHhhcccccccccHHHHHHHhhc------CCChhHHHHHHHHHHHHhhcCCC----
Q 002996 85 PLQRCLKDDDPYVRKTAAICVA-KLYDINAELVEDRGFLESLKDLIS------DNNPMVVANAVAALAEIEENSSR---- 153 (860)
Q Consensus 85 ~v~~~l~d~~~~VRk~A~~~l~-kl~~~~p~~~~~~~~~~~l~~lL~------D~d~~V~~~al~~l~~i~~~~~~---- 153 (860)
.|++-+..++.+-||+||.-++ .+.+..++.+.. -+...+..+|. ..|+.-.=+|+.++..++.....
T Consensus 214 YIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~G 292 (370)
T PF08506_consen 214 YIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSG 292 (370)
T ss_dssp HHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB
T ss_pred HHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCC
Confidence 3444443344444555666655 455555555432 24456666665 24555566788888777655311
Q ss_pred -----CchhccHHHH-HHHHHHhc---cCChhHHHHHHHHHHhccccC-HHHHHHHHHHHhhhhcCCChHH
Q 002996 154 -----PIFEITSHTL-SKLLTALN---ECTEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAV 214 (860)
Q Consensus 154 -----~~~~~~~~~~-~~Ll~~l~---~~~~w~q~~il~~L~~~~~~~-~~~~~~ll~~v~~~l~~~n~aV 214 (860)
..+++. ..+ .+++-.|. ...||++...++.+..|...= ++....++..+..+|++.+..|
T Consensus 293 vt~~~~~v~v~-~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 293 VTQTNELVDVV-DFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp -S-B-TTS-HH-HHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHH
T ss_pred cccccccccHH-HHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcch
Confidence 011110 111 11111222 457999999999999887543 3455678888888888777665
No 227
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=55.03 E-value=96 Score=27.06 Aligned_cols=59 Identities=15% Similarity=0.352 Sum_probs=41.6
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 002996 316 EYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 376 (860)
Q Consensus 316 ~y~~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~ 376 (860)
+|+...+ +-+.+++..+-..+..+. ..+..|+.++-+++..+.+|+..| +.++..|+.+
T Consensus 10 ~f~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E-~~RL~~iL~~ 72 (93)
T cd00238 10 EFVDASD-EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKE-LARLERLLEK 72 (93)
T ss_pred HHhccch-hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHH-HHHHHHHHhc
Confidence 4554443 345666666655555442 457899999999888888898888 6788888876
No 228
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.99 E-value=3.1e+02 Score=31.74 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=60.8
Q ss_pred CCHHHHhHHHHHhcCCC-hhhhHHH-HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChh
Q 002996 58 PNPLIRALAVRTMGCIR-VDKITEY-LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (860)
Q Consensus 58 ~n~~ir~lALr~l~~i~-~~e~~~~-l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~ 135 (860)
....+..+|+-..+-|. ..++-.. +...+-..+.-.++.+||.--+|..-++-.+|+. ..++.|.+-..|.|..
T Consensus 616 ~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm----~vfDtL~r~shd~dl~ 691 (881)
T COG5110 616 EEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM----NVFDTLERSSHDGDLN 691 (881)
T ss_pred hHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch----HHHHHHHHhccccchh
Confidence 34566666655444443 2232222 2222233333389999999999999998889975 3789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002996 136 VVANAVAALAEIEE 149 (860)
Q Consensus 136 V~~~al~~l~~i~~ 149 (860)
|..|++.++--|..
T Consensus 692 v~~ntIfamGLiGA 705 (881)
T COG5110 692 VIINTIFAMGLIGA 705 (881)
T ss_pred HHHHHHHHhhcccc
Confidence 99999988877654
No 229
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=53.68 E-value=1.3e+02 Score=32.23 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=35.8
Q ss_pred HHHHhh-hccChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhCh
Q 002996 220 ILQQME-LITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP 270 (860)
Q Consensus 220 ~~~~l~-~~~~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p 270 (860)
+.+++. ....+ .+.+....+.|++..++. .++++|.-|++.+..+..+-|
T Consensus 100 l~w~v~~~~~~~-~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 100 LSWIVLSQLDRP-WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred HHHHHHhcCCcc-hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 344443 33333 344566778899999995 689999999999999988654
No 230
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=53.60 E-value=1.7e+02 Score=31.26 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccc----ccccHH----HHHHHhhc--------CCChhHHHH
Q 002996 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV----EDRGFL----ESLKDLIS--------DNNPMVVAN 139 (860)
Q Consensus 76 ~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~----~~~~~~----~~l~~lL~--------D~d~~V~~~ 139 (860)
.+..+-++|++..++.|.++.+|..++.++.++....|... .+.++. +.+..+|. +....++..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 44557889999999999999999999999999998766433 222332 33344444 444555555
Q ss_pred HHHHHHHHh
Q 002996 140 AVAALAEIE 148 (860)
Q Consensus 140 al~~l~~i~ 148 (860)
|..++..+.
T Consensus 194 ay~~L~~L~ 202 (282)
T PF10521_consen 194 AYPALLSLL 202 (282)
T ss_pred HHHHHHHHH
Confidence 555555553
No 231
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.49 E-value=1.9e+02 Score=31.09 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=87.5
Q ss_pred HHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH---hhcCCChhHHHHHHHH
Q 002996 67 VRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD---LISDNNPMVVANAVAA 143 (860)
Q Consensus 67 Lr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~---lL~D~d~~V~~~al~~ 143 (860)
...|..+..++ .......+.|.+.++.+.=-++-.+-++...+|+.+.+ .+.+.+.. -++....+|-.+|+..
T Consensus 77 sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~-~L~~vii~vvkslKNlRS~VsraA~~t 152 (334)
T KOG2933|consen 77 SKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNP-MLHEVIIAVVKSLKNLRSAVSRAACMT 152 (334)
T ss_pred hcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 34444444444 33455667778888888888888888888888887754 34444444 4456678999999999
Q ss_pred HHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH
Q 002996 144 LAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 144 l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a 218 (860)
+.+|.......+.+.....+..|+..=.+.+-|...-..+.|..+... -....++..+.+.++|.|+-+.-.+
T Consensus 153 ~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a 225 (334)
T KOG2933|consen 153 LADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKA 225 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhh
Confidence 988876533322332223333333333334455544444444433211 1123567778888999888765444
No 232
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.71 E-value=5.8e+02 Score=32.25 Aligned_cols=129 Identities=15% Similarity=0.208 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhCccc-----HHHHHHHHHHh
Q 002996 323 VDFVRKAVRAIGRCAIKLERAAER-----CISVLLELIKIK-VNYVVQEAIIVIKDIFRRYPNT-----YESIIATLCES 391 (860)
Q Consensus 323 ~~~~~~~i~~I~~la~k~~~~~~~-----~v~~ll~ll~~~-~~~v~~e~i~~l~~i~~~~p~~-----~~~~i~~L~~~ 391 (860)
++-|..++--++.+...|..--+. ++.+.+..+... .....+=+...+..+..+|++. +..+-++|+..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 344444444445555544433332 344444545443 2233444445666677777654 34566777776
Q ss_pred hccCCchHHHHHHHHHHhhccccc----CC-----------------HHHHHH----HHHhhCCCCcHHHHHHHHHHHHH
Q 002996 392 LDTLDEPEAKASMIWIIGEYAERI----DN-----------------ADELLE----SFLESFPEEPAQVQLQLLTATVK 446 (860)
Q Consensus 392 l~~~~~~~~~~~~~wilGEy~~~i----~~-----------------~~~~l~----~~~~~~~~e~~~v~~~iLta~~K 446 (860)
|.| ..|++++++++-+|-|-.-. +. .++++. .++....+-++.||..+..++..
T Consensus 651 LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~ 729 (1387)
T KOG1517|consen 651 LSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSH 729 (1387)
T ss_pred hcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence 655 46888888888888875421 11 122222 34445667788888888888888
Q ss_pred HhhcCC
Q 002996 447 LFLKKP 452 (860)
Q Consensus 447 l~~~~p 452 (860)
+...+.
T Consensus 730 ~~~g~~ 735 (1387)
T KOG1517|consen 730 FVVGYV 735 (1387)
T ss_pred HHHhhH
Confidence 877654
No 233
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=52.69 E-value=20 Score=23.25 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHhHHHHHhcCCChhhhHHHHHHHHH
Q 002996 62 IRALAVRTMGCIRVDKITEYLCDPLQ 87 (860)
Q Consensus 62 ir~lALr~l~~i~~~e~~~~l~~~v~ 87 (860)
||..|.++|+.|+.++-++.|...++
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 68889999999999887777655543
No 234
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=50.91 E-value=1e+02 Score=27.73 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=44.6
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 86 v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
|.++-.+..+-.-....+-+..+...+++... .....|.+-|.++|+.|+.-|+.+|..+.++.+
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~--~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINETNVGPK--EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCCCccHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 34444443333344555556666655555554 377888888999999999999999999888743
No 235
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=50.09 E-value=1e+02 Score=33.98 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=71.8
Q ss_pred HHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhH-HHHH
Q 002996 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKIT-EYLC 83 (860)
Q Consensus 12 ~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-------~~e~~-~~l~ 83 (860)
-.+.|...-++-.++.=+-|-++-...+++|..--++-.|.|-|++.||.|.-+||..+..+. ..|++ +.+.
T Consensus 11 ~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~ 90 (462)
T KOG2199|consen 11 QDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFT 90 (462)
T ss_pred HHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHH
Confidence 344555566666777777888888899999999999999999999999999999998887542 23443 6777
Q ss_pred HHHHhhhc-CCChHHHHHHHH
Q 002996 84 DPLQRCLK-DDDPYVRKTAAI 103 (860)
Q Consensus 84 ~~v~~~l~-d~~~~VRk~A~~ 103 (860)
..+++++. ..++-|+++-..
T Consensus 91 ~el~al~~~~~h~kV~~k~~~ 111 (462)
T KOG2199|consen 91 TELRALIESKAHPKVCEKMRD 111 (462)
T ss_pred HHHHHHHhhcccHHHHHHHHH
Confidence 88888888 578888877544
No 236
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=49.85 E-value=6e+02 Score=31.58 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=68.1
Q ss_pred CChhHHHHHHHHHHHHHhh-Ch------hhhh--cc-ceE-EEeccCCcHHHHHHHHHHHH--Hh-cCcccHHHHHHHHH
Q 002996 250 AEPEIQYVALRNINLIVQR-RP------TILA--HE-IKV-FFCKYNDPIYVKMEKLEIMI--KL-ASDRNIDQVLLEFK 315 (860)
Q Consensus 250 ~~~niry~aL~~l~~l~~~-~p------~~~~--~~-~~~-~~~l~~d~~~Ik~~~L~lL~--~l-~~~~Nv~~Iv~eL~ 315 (860)
+||---.++.+.+..|... +| ++|. .+ ..+ |.--.+|+..||+.-|.+-. .+ +++.=.+..+.-|.
T Consensus 182 KDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI~Fkppk~D~~~I~reDL~~sLr~al~stP~Fa~~~lp~Ll 261 (1030)
T KOG1967|consen 182 KDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPITFKPPKDDTITIRREDLKASLRSALVSTPSFAPFALPLLL 261 (1030)
T ss_pred CCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeeeeccCCCCCcccccHHHHHHHHHHHHhcCccchhhHHHHHH
Confidence 4554445555666666652 22 1221 11 222 33345777778876555433 33 34555667788888
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHh
Q 002996 316 EYATEVDVDFVRKAVRAIGRCAIKLE-RAAERCISVLLELIKI 357 (860)
Q Consensus 316 ~y~~~~d~~~~~~~i~~I~~la~k~~-~~~~~~v~~ll~ll~~ 357 (860)
+=++..++..+.+....+-.|+.+|. ....|...-+...++.
T Consensus 262 EKL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ 304 (1030)
T KOG1967|consen 262 EKLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKP 304 (1030)
T ss_pred HHhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHH
Confidence 88888888899999999999999997 4455666666666654
No 237
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=49.32 E-value=3.4e+02 Score=28.63 Aligned_cols=204 Identities=16% Similarity=0.200 Sum_probs=104.5
Q ss_pred HHhhc-CCChhHHHHHHHHHHHHHhhChh-hhhc-c---ceEEEec-cCCcHHHHHHHHHHHHHhcC-----cccHHHHH
Q 002996 244 LVTLL-SAEPEIQYVALRNINLIVQRRPT-ILAH-E---IKVFFCK-YNDPIYVKMEKLEIMIKLAS-----DRNIDQVL 311 (860)
Q Consensus 244 L~~ll-s~~~niry~aL~~l~~l~~~~p~-~~~~-~---~~~~~~l-~~d~~~Ik~~~L~lL~~l~~-----~~Nv~~Iv 311 (860)
|+..| +.++.+|--|+..|..++.+-|. .+.. + +..|||- -+|...+.-. ++-+..|+. .+.+..++
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKMKNFSPESAVKIL 82 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhCcCCChhhHHHHH
Confidence 55555 67888999999999988887763 3332 2 2356663 3444444332 555555543 33455566
Q ss_pred HHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhCcccHHHH
Q 002996 312 LEFKEYAT--EVDVDFVRKAVRAIGRCAIKLERA----AERCISVLLELIKIKVNY-VVQEAIIVIKDIFRRYPNTYESI 384 (860)
Q Consensus 312 ~eL~~y~~--~~d~~~~~~~i~~I~~la~k~~~~----~~~~v~~ll~ll~~~~~~-v~~e~i~~l~~i~~~~p~~~~~~ 384 (860)
+.+.+... .--..-|....+-+..+..++... ...++..+++++....+- ..--+...++.++++++- ...
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~ 160 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEF 160 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chh
Confidence 66554322 111223333444444445554332 234455555554433321 111112233444455542 334
Q ss_pred HHHHHHhhcc---------------CCchHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhh
Q 002996 385 IATLCESLDT---------------LDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFL 449 (860)
Q Consensus 385 i~~L~~~l~~---------------~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~ 449 (860)
.+.+++.+.- ++..+.+.+.--++.--. . =++..+..+++++...++.+|.-.|.++.-.+.
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~--fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-L--FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-h--hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4555543320 122233444333332100 0 145667777788878888888888888888887
Q ss_pred cCCC
Q 002996 450 KKPT 453 (860)
Q Consensus 450 ~~p~ 453 (860)
+++.
T Consensus 238 ~y~~ 241 (262)
T PF14500_consen 238 NYGA 241 (262)
T ss_pred HCCH
Confidence 7764
No 238
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=48.92 E-value=1.3e+02 Score=28.36 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=44.7
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002996 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 85 ~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~ 151 (860)
.|.++..+..+----.+++-+.-+.+..++...+ .+..|.+-|...||.|+..|+.+|..+.++-
T Consensus 9 li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~ke--a~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 9 LIEKATSESLPSPDWSLILEICDLINSSPDGAKE--AARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp HHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHH--HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 3445444433333456677777777777655553 6788888888999999999999998877763
No 239
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=48.84 E-value=1.1e+02 Score=35.02 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHH
Q 002996 293 EKLEIMIKLASDRNIDQVLLEFKE 316 (860)
Q Consensus 293 ~~L~lL~~l~~~~Nv~~Iv~eL~~ 316 (860)
+.+.=|..=+|.+|+..|+.||.+
T Consensus 166 ksInglInkvn~sNi~~ii~eLfq 189 (739)
T KOG2140|consen 166 KSINGLINKVNASNIQEIIRELFQ 189 (739)
T ss_pred HHhHHHHhhhhHHHHHHHHHHHHH
Confidence 444556666899999999999974
No 240
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=48.71 E-value=1.2e+02 Score=32.48 Aligned_cols=76 Identities=11% Similarity=0.185 Sum_probs=47.0
Q ss_pred eeEEEEEEEecCCCCccceee--eec-cCccCcccCCCCC---CCccCCCCeeeEEEeeeecCCCCCCCCCcceEEEEec
Q 002996 657 QVFYSMLFENNTQTPLDGFMI--QFN-KNTFGLAAGGALQ---VPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKN 730 (860)
Q Consensus 657 ~~~l~l~~~N~s~~~lt~f~v--~i~-~n~~gl~~~~~~~---~~~l~pg~~~~~~v~i~~~~~~~~~~~~~~l~~~~~~ 730 (860)
...+-+.|+|+...+++-..+ .+. +..|..-+++... ...++||++.+..-.+.....+...+..+.+.+.+++
T Consensus 100 ~~~~LvgftN~g~~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d 179 (285)
T PF03896_consen 100 PVKFLVGFTNKGSEPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPSEELAPRPFGLVINLIYED 179 (285)
T ss_pred eEEEEEEEEeCCCCCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEe
Confidence 346777888887776666655 222 2223433444322 2378899977766666555566666767778888875
Q ss_pred CC
Q 002996 731 NQ 732 (860)
Q Consensus 731 ~~ 732 (860)
..
T Consensus 180 ~~ 181 (285)
T PF03896_consen 180 SD 181 (285)
T ss_pred CC
Confidence 44
No 241
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=48.45 E-value=6.7e+02 Score=31.74 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=88.0
Q ss_pred CCCcccchHHHhH----hccCCCcchHHHHHHHHHHhcC-CCCcHHHHHHHHHHh---hcCCCCH-HHHhHHHHHhcC--
Q 002996 4 GKDVSSLFTDVVN----CMQTENLELKKLVYLYLINYAK-SQPDLAILAVNTFVK---DSQDPNP-LIRALAVRTMGC-- 72 (860)
Q Consensus 4 G~d~s~~f~~vi~----l~~s~~~~~Krl~Yl~l~~~~~-~~~el~~L~in~l~k---Dl~~~n~-~ir~lALr~l~~-- 72 (860)
|.|++.+.-.+++ .+...|..++.=.-=.+..... ..++++.-++.+..- -..+++. .=-+|||--|+.
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 5565555444444 3444555544332222222222 235677666666544 2222333 234566665554
Q ss_pred CChhhhHHHHHHHHHhhhcC--------CChHHHHHHHHHHHHHHhh-cccccccccHHHHH-----HHhhcCCChhHHH
Q 002996 73 IRVDKITEYLCDPLQRCLKD--------DDPYVRKTAAICVAKLYDI-NAELVEDRGFLESL-----KDLISDNNPMVVA 138 (860)
Q Consensus 73 i~~~e~~~~l~~~v~~~l~d--------~~~~VRk~A~~~l~kl~~~-~p~~~~~~~~~~~l-----~~lL~D~d~~V~~ 138 (860)
+-.+..++.+.+.|.++|.- ....||-.|+..+--+++- .|+.++. +...| ...+-|++..+..
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p--~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP--VLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH--HHHHHHHHHHHHHhcCchhhHhH
Confidence 45788888999999888852 4567999999988888875 4554542 44433 3455699999999
Q ss_pred HHHHHHHHHhhc
Q 002996 139 NAVAALAEIEEN 150 (860)
Q Consensus 139 ~al~~l~~i~~~ 150 (860)
+|.+|+.|..-.
T Consensus 490 AAsAAlqE~VGR 501 (1133)
T KOG1943|consen 490 AASAALQENVGR 501 (1133)
T ss_pred HHHHHHHHHhcc
Confidence 999999997544
No 242
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=48.31 E-value=2.1e+02 Score=34.06 Aligned_cols=127 Identities=12% Similarity=0.202 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCc--------
Q 002996 327 RKAVRAIGRCAIKLERAAERCISVLLELIK-IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDE-------- 397 (860)
Q Consensus 327 ~~~i~~I~~la~k~~~~~~~~v~~ll~ll~-~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~-------- 397 (860)
...++++..++.+.....+..|+.++++.= ...+.+.+.-+..+..++..++..-..++..|++.+.....
T Consensus 54 ~~~L~~L~~~Vs~Ld~~~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~ 133 (563)
T PF05327_consen 54 IRWLKALSSCVSLLDSSCKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGC 133 (563)
T ss_dssp HHHHHHHHHGGGGG-SCCHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchh
Confidence 444555555555555444555555544411 11222333333445555555565555666666655421100
Q ss_pred -----hHHHHHHHHHHhhcccccCCHH-HHHHHHHhhCCC--CcHHHHHHHHHHHHHHhhcCCC
Q 002996 398 -----PEAKASMIWIIGEYAERIDNAD-ELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPT 453 (860)
Q Consensus 398 -----~~~~~~~~wilGEy~~~i~~~~-~~l~~~~~~~~~--e~~~v~~~iLta~~Kl~~~~p~ 453 (860)
.+....+.-+|..-...++.++ -+...+.++|+. .+..+...-+..+.++..-.|.
T Consensus 134 ~~~~~~~~~~~vH~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~ 197 (563)
T PF05327_consen 134 PPEKRREIYERVHDALQKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPE 197 (563)
T ss_dssp -----------HHHHHHHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GG
T ss_pred hhhhhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHH
Confidence 0011112223333333344332 333444455543 3455555566666666665554
No 243
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=46.29 E-value=1.1e+02 Score=26.84 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=42.0
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 002996 316 EYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 375 (860)
Q Consensus 316 ~y~~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~ 375 (860)
+|+...+ +=+.+++...-..+...+ ..+.+|+.++-+++..+.+|+..| +.+|..++.
T Consensus 12 ~f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~ 73 (95)
T PF07749_consen 12 EFVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE 73 (95)
T ss_dssp HHHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH
T ss_pred HHHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh
Confidence 4555554 555566666666666543 468899999999999999999888 577888877
No 244
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=45.71 E-value=3.6e+02 Score=27.85 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=81.9
Q ss_pred ccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhHHHHHHHHHh-------
Q 002996 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITEYLCDPLQR------- 88 (860)
Q Consensus 18 ~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~--~e~~~~l~~~v~~------- 88 (860)
-..++-+...-..-.+-.++..+....-+++.++..=...+....++.++|-++.+-. +...+.+.+.+..
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~ 89 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPS 89 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhccc
Confidence 3344444333333333344433325566777777766666666678888888887752 2222333333333
Q ss_pred hhc--CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh-cCCChhHHHHHHHHHHHHhhcC
Q 002996 89 CLK--DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 89 ~l~--d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL-~D~d~~V~~~al~~l~~i~~~~ 151 (860)
... +....+.-..+.++.-+.+..|+.-. +++..|...| .+.++.+.+.++-++..+++..
T Consensus 90 ~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~--~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 90 SFSSKDEFWECLISIAASIRDICCSRPDHGV--DLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhChhhHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 122 23334444446777888888998444 4889999999 7888899999999999998654
No 245
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=45.12 E-value=29 Score=39.03 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=82.6
Q ss_pred cCCCcchHHHHHHHHHHhcCCCCcHHHHHHHH-HHhhcCCCCHHHHhHHHHHhcCCC--hhh------------------
Q 002996 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNT-FVKDSQDPNPLIRALAVRTMGCIR--VDK------------------ 77 (860)
Q Consensus 19 ~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~-l~kDl~~~n~~ir~lALr~l~~i~--~~e------------------ 77 (860)
...+--.||..|=|+..+....|+.. +.+ +.--|+|+|+.-|++||..++.|- +..
T Consensus 22 ~~~~~~~~~~~ygyw~~~~pd~~~~g---~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v 98 (728)
T KOG4535|consen 22 STIKSIEKKVLYGYWSAFIPDTPELG---SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSV 98 (728)
T ss_pred HHHhhhhhhhhhceeeeecCCCCCCC---CceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHH
Confidence 34456689999999999988776632 222 234689999999999999988542 111
Q ss_pred hH----HHHHHHHHhhhc-CCChHHHHHHHHHHHHHHhhccc-cccc---ccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 78 IT----EYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAE-LVED---RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 78 ~~----~~l~~~v~~~l~-d~~~~VRk~A~~~l~kl~~~~p~-~~~~---~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
|+ ..+...+.-+|. ..+|-|----+-|+.-+.+-.|- .++- .++...++.+++.+|+.|..+++.++.-|.
T Consensus 99 ~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 99 MIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 11 122222222222 34444545556677766665551 1110 147788899999999999999999887775
Q ss_pred hc
Q 002996 149 EN 150 (860)
Q Consensus 149 ~~ 150 (860)
..
T Consensus 179 ~t 180 (728)
T KOG4535|consen 179 ST 180 (728)
T ss_pred hc
Confidence 43
No 246
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=43.61 E-value=5.1e+02 Score=28.93 Aligned_cols=216 Identities=11% Similarity=0.081 Sum_probs=112.9
Q ss_pred HHHHHHhhcCCC--CHHHHhHHHHHhcC--C----ChhhhHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHHhhcccccc
Q 002996 47 AVNTFVKDSQDP--NPLIRALAVRTMGC--I----RVDKITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVE 117 (860)
Q Consensus 47 ~in~l~kDl~~~--n~~ir~lALr~l~~--i----~~~e~~~~l~~~v~~~l~-d~~~~VRk~A~~~l~kl~~~~p~~~~ 117 (860)
.+.....-+.++ +-.+...+|.+|+. + .+.+.++.+...+...-. =++.-|=--++.++-++...+|+.+.
T Consensus 91 ~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~ 170 (372)
T PF12231_consen 91 IIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMI 170 (372)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444332 34555666666664 2 234444444444444333 25555667788889999999998764
Q ss_pred c--ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC---------chh--c-----cHHHHHHHHHHhcc---C---
Q 002996 118 D--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP---------IFE--I-----TSHTLSKLLTALNE---C--- 173 (860)
Q Consensus 118 ~--~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~---------~~~--~-----~~~~~~~Ll~~l~~---~--- 173 (860)
. ..|.+.+...+-+....+...|+.++.++...-+.+ .++ + ..-...+|-..+.+ .
T Consensus 171 ~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a 250 (372)
T PF12231_consen 171 KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLA 250 (372)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchH
Confidence 3 259998888877777777777777777765332111 000 0 00011122222222 1
Q ss_pred -ChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH-----HHHHHhhhccChHHHHHHHHHhhhHHHhh
Q 002996 174 -TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA-----MILQQMELITSTDVVRNLCKKMAPPLVTL 247 (860)
Q Consensus 174 -~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-----~~~~~l~~~~~~~~~~~~~~~~~~~L~~l 247 (860)
.=|+.+ +.+|..-....-+...+.+.....+.++.++++..+| .+..+++. +....+...+-+..|+..-
T Consensus 251 ~~iW~~~--i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~--~~~~~~k~l~lL~~Pl~~~ 326 (372)
T PF12231_consen 251 MQIWSVV--ILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP--NELTSPKRLKLLCQPLSSQ 326 (372)
T ss_pred HHHHHHH--HHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC--CccccHHHHHHHHHHHHHH
Confidence 124432 2233211112223445667777788889999888777 22222221 2222233344455566544
Q ss_pred cC--CCh----hHHHHHHHHHHHHH
Q 002996 248 LS--AEP----EIQYVALRNINLIV 266 (860)
Q Consensus 248 ls--~~~----niry~aL~~l~~l~ 266 (860)
+. ..+ +++-.++..+..+.
T Consensus 327 l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 327 LRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred hCccccccccHHHHHHHHHHHhchH
Confidence 42 233 56777777666555
No 247
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=43.37 E-value=2.3e+02 Score=26.79 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=42.9
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC
Q 002996 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (860)
Q Consensus 86 v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~ 153 (860)
|.++-.+...-.--...+-+.-+.+..+..-. +-+..|.+-|..+|+.|+.-|+.+|..+.++ |+
T Consensus 9 I~kATs~~l~~~dw~~ileicD~In~~~~~~k--~a~ral~krl~~~n~~vql~AL~LLe~~vkN-CG 73 (142)
T cd03569 9 IEKATSELLGEPDLASILEICDMIRSKDVQPK--YAMRALKKRLLSKNPNVQLYALLLLESCVKN-CG 73 (142)
T ss_pred HHHHcCcccCccCHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-CC
Confidence 44444443333445556666666665554433 3678888888899999999999988777665 44
No 248
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=41.99 E-value=8.9e+02 Score=34.04 Aligned_cols=279 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc--------c--ccc
Q 002996 51 FVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--------L--VED 118 (860)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~--------~--~~~ 118 (860)
+..+....|.. --+|.++++++. .......+-..+-..+.+.++-+||.|++++..+++..+- + +..
T Consensus 450 ~~~~~~~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~ 528 (2341)
T KOG0891|consen 450 ILQKTGDSTDD-IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKE 528 (2341)
T ss_pred hhhhcccccHH-HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHH
Q ss_pred ccHHHHHHHh-hcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCH----
Q 002996 119 RGFLESLKDL-ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA---- 193 (860)
Q Consensus 119 ~~~~~~l~~l-L~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~---- 193 (860)
....+..+ +.|.+|.++...+..+. .+-...-..+..++.++..+.+..=-.|......+.+.+-.++
T Consensus 529 --vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl 601 (2341)
T KOG0891|consen 529 --VLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVL 601 (2341)
T ss_pred --HHHHHHHHhccCCCcchhhhHHhhhc-----cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHh
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChh
Q 002996 194 REAENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT 271 (860)
Q Consensus 194 ~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~ 271 (860)
.......-....-+..+..+++-+- ....+.--...+..+..........+...+ ..++.+.-.++.++..|++....
T Consensus 602 ~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~ 681 (2341)
T KOG0891|consen 602 PSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGE 681 (2341)
T ss_pred HHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccc
Q ss_pred hhhccceEEEeccCCcHH------HHHHHHHHHHHhcCcccHHH--------HHHHHHHhh-hhccHHHHHHHHHHHHHH
Q 002996 272 ILAHEIKVFFCKYNDPIY------VKMEKLEIMIKLASDRNIDQ--------VLLEFKEYA-TEVDVDFVRKAVRAIGRC 336 (860)
Q Consensus 272 ~~~~~~~~~~~l~~d~~~------Ik~~~L~lL~~l~~~~Nv~~--------Iv~eL~~y~-~~~d~~~~~~~i~~I~~l 336 (860)
......+.++++..+... .|+-++..+..++...-+-. +++-|...+ +.....+++.+++.+|.+
T Consensus 682 ~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 682 EMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred hhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Q ss_pred H
Q 002996 337 A 337 (860)
Q Consensus 337 a 337 (860)
+
T Consensus 762 g 762 (2341)
T KOG0891|consen 762 G 762 (2341)
T ss_pred c
No 249
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=40.78 E-value=1.5e+02 Score=27.68 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002996 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 99 k~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~ 151 (860)
-.+.+.+.-+.+..++... .-+..|.+-|..+||.|+..|+.+|..+.++-
T Consensus 18 ~~~il~icd~I~~~~~~~k--~a~raL~krl~~~n~~vql~AL~lLd~~vkNc 68 (133)
T cd03561 18 WALNLELCDLINLKPNGPK--EAARAIRKKIKYGNPHVQLLALTLLELLVKNC 68 (133)
T ss_pred HHHHHHHHHHHhCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 4556666666666655444 36788888898999999999999998877763
No 250
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=40.77 E-value=2.5e+02 Score=26.66 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc----cccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhc
Q 002996 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE----DRGFLESLKDLISD-NNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 79 ~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~----~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~ 150 (860)
....+..|++-+.+++|.|--.|+.-+--+.+-+...+. ..+|.+.|.+++.+ .++.|..-++.++.+-...
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 356667788889999999998888877777766554332 34799999999988 7888877777777665543
No 251
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=39.56 E-value=1.1e+02 Score=26.17 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhcccccccccHHHHH---HHhhcCCChhHHHHHHHHHH
Q 002996 80 EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLESL---KDLISDNNPMVVANAVAALA 145 (860)
Q Consensus 80 ~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l---~~lL~D~d~~V~~~al~~l~ 145 (860)
..+..|....+.+ ++.-||...+.|+.++.....+.+.. +|...+ .....|.+..++..|...+.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKS-GWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4566666666544 78899999999999999988877764 785544 44456777777777765543
No 252
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=39.39 E-value=3.8e+02 Score=26.27 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=32.4
Q ss_pred cCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002996 302 ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCIS 349 (860)
Q Consensus 302 ~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~ 349 (860)
.+++|++.++.+|.+.... +++.+..+++.|-..+...+....-|..
T Consensus 11 Ls~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~ 57 (200)
T smart00543 11 LSPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYAR 57 (200)
T ss_pred CCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 3578999999999876643 3567778888877777655544333333
No 253
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=39.12 E-value=5.6e+02 Score=28.16 Aligned_cols=160 Identities=15% Similarity=0.220 Sum_probs=84.5
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhc
Q 002996 198 NIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAH 275 (860)
Q Consensus 198 ~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~ 275 (860)
+++..+...-.+.+.+...+.++-+|+. .+...+.++. ...-.+.... ...-++.-=|+.++..+..+|+.+++.
T Consensus 125 eil~~L~~gy~~~dial~~g~mlRec~k---~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~ 201 (335)
T PF08569_consen 125 EILDILLRGYENPDIALNCGDMLRECIK---HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAE 201 (335)
T ss_dssp HHHHHHHHGGGSTTTHHHHHHHHHHHTT---SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHhcCccccchHHHHHHHHHh---hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHH
Confidence 4555555555666666555555545543 3333333322 1111223333 345688888899999988888866543
Q ss_pred c----ceEEE-----eccCCcHHHHHHHHHHHHHhc-CcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHH
Q 002996 276 E----IKVFF-----CKYNDPIYVKMEKLEIMIKLA-SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAE 345 (860)
Q Consensus 276 ~----~~~~~-----~l~~d~~~Ik~~~L~lL~~l~-~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~ 345 (860)
+ +..|+ ++.++..-.||.+|.+|..+. +..|..... .|+. ..
T Consensus 202 fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~----~yi~------------------------~~ 253 (335)
T PF08569_consen 202 FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT----RYIS------------------------SP 253 (335)
T ss_dssp HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH----HHTT-------------------------H
T ss_pred HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH----HHHC------------------------CH
Confidence 2 22111 122333344555555554443 333322211 1211 23
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 002996 346 RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLC 389 (860)
Q Consensus 346 ~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~ 389 (860)
..+..++.+|+.....+.-|+.++++=.+ .||..-..+...|.
T Consensus 254 ~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV-ANp~K~~~I~~iL~ 296 (335)
T PF08569_consen 254 ENLKLMMNLLRDKSKNIQFEAFHVFKVFV-ANPNKPPPIVDILI 296 (335)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHHH-H-SS-BHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHH-hCCCCChHHHHHHH
Confidence 56788999999998889999999887554 45876666655543
No 254
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=38.86 E-value=3.4e+02 Score=25.60 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----Ch---hhhH-HHHHHHHHhhhcC---
Q 002996 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKIT-EYLCDPLQRCLKD--- 92 (860)
Q Consensus 24 ~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i----~~---~e~~-~~l~~~v~~~l~d--- 92 (860)
+.---+-+-++-....+++-+..++-.|+|=++++||.+.-+||..|-.+ +. .+++ ..+...+.+++..
T Consensus 16 ~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~ 95 (139)
T cd03567 16 EEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYL 95 (139)
T ss_pred CCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccC
Confidence 33334445555566677777888999999999999999998888766432 11 3333 4555667777753
Q ss_pred ---CChHHHHHHHHHHHH
Q 002996 93 ---DDPYVRKTAAICVAK 107 (860)
Q Consensus 93 ---~~~~VRk~A~~~l~k 107 (860)
.++-||++.+..+..
T Consensus 96 ~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 96 GSRTSEKVKTKIIELLYS 113 (139)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 578888887765543
No 255
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=38.60 E-value=4.2e+02 Score=29.12 Aligned_cols=105 Identities=12% Similarity=0.258 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHH--------HHHHHHHHhhccCCchHHHHHHHHHHhhcccccC---
Q 002996 348 ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE--------SIIATLCESLDTLDEPEAKASMIWIIGEYAERID--- 416 (860)
Q Consensus 348 v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~--------~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~--- 416 (860)
+..+.+.+....=.|..+++..+++++.+++..-. ......-..|.+ ..--+++-.+-+|||.--.-.
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-~NYvtkrqslkLL~ellldr~n~~ 244 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-SNYVTKRQSLKLLGELLLDRSNFN 244 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC-CCeEeehhhHHHHHHHHHchhHHH
Confidence 33355555555556888888888888887765421 122222222222 233356667788888632111
Q ss_pred ------CHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCC
Q 002996 417 ------NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE 454 (860)
Q Consensus 417 ------~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~ 454 (860)
+.++-|..+..-+.+.+..+|.... -+.|+|..+|..
T Consensus 245 vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAF-hvFKvFVANp~K 287 (335)
T PF08569_consen 245 VMTRYISSPENLKLMMNLLRDKSKNIQFEAF-HVFKVFVANPNK 287 (335)
T ss_dssp HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHH-HHHHHHHH-SS-
T ss_pred HHHHHHCCHHHHHHHHHHhcCcchhhhHHHH-HHHHHHHhCCCC
Confidence 2456677777777788888887765 467888888864
No 256
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=38.47 E-value=32 Score=22.61 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=17.4
Q ss_pred HHHhHHHHHhcCCChhhhHHHHH
Q 002996 61 LIRALAVRTMGCIRVDKITEYLC 83 (860)
Q Consensus 61 ~ir~lALr~l~~i~~~e~~~~l~ 83 (860)
.+|..|..+|++++.++-++.|.
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~ 24 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALI 24 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHH
Confidence 57888888888888877666543
No 257
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=38.01 E-value=77 Score=28.18 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHH--HhhhhhhHHHHHHHHHHHHHhCcccHHHH
Q 002996 325 FVRKAVRAIGRCAIKLERAAERC-----ISVLLELI--KIKVNYVVQEAIIVIKDIFRRYPNTYESI 384 (860)
Q Consensus 325 ~~~~~i~~I~~la~k~~~~~~~~-----v~~ll~ll--~~~~~~v~~e~i~~l~~i~~~~p~~~~~~ 384 (860)
||+.+++.||.++-+-+..-+.. +..++..- .....|+.+-++..|+.+...+++-|+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 67788888888887655433322 22233322 22346888889999999999999887654
No 258
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=37.16 E-value=6.6e+02 Score=28.44 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=59.7
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc-cHHHHHHHHHHhcc-----CChhHHHHHHHHHHhcc-cc
Q 002996 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE-----CTEWGQVFILDALSRYK-AA 191 (860)
Q Consensus 119 ~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~-----~~~w~q~~il~~L~~~~-~~ 191 (860)
+.+.+.+.+.+...|+..+..+..++-...+++. .++.+ -...+.+|+..|.. -+--.|..++..|+.+. |.
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 3578888888888888888777777777766652 23332 23456777777642 24456777777777654 22
Q ss_pred CHHHH---HHHHHHHhhhhcCCChHHHHH
Q 002996 192 DAREA---ENIVERVTPRLQHANCAVVLS 217 (860)
Q Consensus 192 ~~~~~---~~ll~~v~~~l~~~n~aVv~~ 217 (860)
..+.. ..+.+.+.+.++...|-|++-
T Consensus 393 ~nka~~~~aGvteaIL~~lk~~~ppv~fk 421 (604)
T KOG4500|consen 393 SNKAHFAPAGVTEAILLQLKLASPPVTFK 421 (604)
T ss_pred CchhhccccchHHHHHHHHHhcCCcchHH
Confidence 21111 124556667776666665543
No 259
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=36.54 E-value=9.3e+02 Score=29.97 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=122.1
Q ss_pred CcHHHHHHHHHHhhcCC-CCHHHHhHHHHHhcCCC-----hhhhHHHHHH-HHHhhhcCCChHHHHHHHHHHHHHHhhcc
Q 002996 41 PDLAILAVNTFVKDSQD-PNPLIRALAVRTMGCIR-----VDKITEYLCD-PLQRCLKDDDPYVRKTAAICVAKLYDINA 113 (860)
Q Consensus 41 ~el~~L~in~l~kDl~~-~n~~ir~lALr~l~~i~-----~~e~~~~l~~-~v~~~l~d~~~~VRk~A~~~l~kl~~~~p 113 (860)
.+...-.++.+...+.+ .-|..-+.|+-+++... .+.+.+.... .+.-+..|..++||-+|+.+..-..+ +
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~ 521 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--V 521 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--c
Confidence 45666677888888855 46777778888888654 3444444433 34444468999999999887765553 3
Q ss_pred cccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCch---hccHHHHHHHHHHhccCChhHHHH----HHHH
Q 002996 114 ELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF---EITSHTLSKLLTALNECTEWGQVF----ILDA 184 (860)
Q Consensus 114 ~~~~--~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~---~~~~~~~~~Ll~~l~~~~~w~q~~----il~~ 184 (860)
..+. .+.+++.|..+..+....|.....-+|+.+++-+|..-. ..+-+.+..+.... .-+|..... +.++
T Consensus 522 ~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~-s~DP~V~~~~qd~f~el 600 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKY-SEDPQVASLAQDLFEEL 600 (1005)
T ss_pred eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHh-cCCchHHHHHHHHHHHH
Confidence 3222 125777778888877777777777777777776654211 11222222222221 224432222 2222
Q ss_pred HH---hccccCHHHHHHHHHHHhhhhcCCC---hH--HHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhc--CCChh
Q 002996 185 LS---RYKAADAREAENIVERVTPRLQHAN---CA--VVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLL--SAEPE 253 (860)
Q Consensus 185 L~---~~~~~~~~~~~~ll~~v~~~l~~~n---~a--Vv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll--s~~~n 253 (860)
++ .|+| ..+.++..+...++..+ ++ .-++. ++-..+++-. ++..+.+...+.+++.+.. +.|.+
T Consensus 601 ~q~~~~~g~----m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp-~pL~~~l~~~~FpaVak~tlHsdD~~ 675 (1005)
T KOG2274|consen 601 LQIAANYGP----MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP-SPLPNLLICYAFPAVAKITLHSDDHE 675 (1005)
T ss_pred HHHHHhhcc----hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC-CCccHHHHHHHhHHhHhheeecCChH
Confidence 22 2222 22344555555554432 22 12222 3333444433 3355566666778887753 66777
Q ss_pred HHHHHHHHHHHHHhhCh
Q 002996 254 IQYVALRNINLIVQRRP 270 (860)
Q Consensus 254 iry~aL~~l~~l~~~~p 270 (860)
+--.+=.+|.-++...+
T Consensus 676 tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 676 TLQNATECLRALISVTL 692 (1005)
T ss_pred HHHhHHHHHHHHHhcCH
Confidence 66666677766666543
No 260
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=36.49 E-value=2.7e+02 Score=25.95 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 99 k~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
-...+-+.-+.+..++... ..+..|.+-|..+||.|+..|+.+|..+.++
T Consensus 18 w~~~l~icD~i~~~~~~~k--~a~r~l~krl~~~n~~v~l~AL~lLe~~vkN 67 (133)
T smart00288 18 WELILEICDLINSTPDGPK--DAVRLLKKRLNNKNPHVALLALTLLDACVKN 67 (133)
T ss_pred HHHHHHHHHHHhCCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3445555666665654444 3677888888899999999999999877766
No 261
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=36.45 E-value=57 Score=22.66 Aligned_cols=27 Identities=33% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHH
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKL 108 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl 108 (860)
.++.+.+++.+.++.+++.|+.++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456677777788888999888888765
No 262
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.72 E-value=1.1e+02 Score=32.81 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=42.5
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~--~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
..+...+.+.+|-|||.|+.-+.-+---.-.... ....++.+.+|+.|.++ ..-|+.++..+.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 4578899999999999999666544322001111 11356788899999888 45556666666654
No 263
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=34.24 E-value=3e+02 Score=24.62 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC
Q 002996 23 LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI 73 (860)
Q Consensus 23 ~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i 73 (860)
.....-..+.++.+...+++-.--++..|.|=|+++|+.+.-.||..|=.+
T Consensus 14 ~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l 64 (115)
T cd00197 14 MGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC 64 (115)
T ss_pred CCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 334444445555555555566667778888888888888888887766543
No 264
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=34.22 E-value=51 Score=28.45 Aligned_cols=55 Identities=16% Similarity=0.287 Sum_probs=36.7
Q ss_pred CCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeec
Q 002996 655 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLF 712 (860)
Q Consensus 655 ~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~ 712 (860)
|....+.+++.|.......++.+++..+ |-.. ....++.|+||+...+.+.+...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~--~~~~-~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD--GNSV-STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET--TEEE-EEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC--Ccee-ccEEECCcCCCcEEEEEEEEEeC
Confidence 4567899999999888899999987543 2212 23346789999988887776655
No 265
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=34.18 E-value=36 Score=30.29 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=37.9
Q ss_pred CCeeEEEEEEEecCCCCccceeeee-----ccCccCccc---CCCCCCCccCCCCeeeEEEeeeecCC
Q 002996 655 DGQVFYSMLFENNTQTPLDGFMIQF-----NKNTFGLAA---GGALQVPQLQPGTSGRTLLPMVLFQN 714 (860)
Q Consensus 655 ~~~~~l~l~~~N~s~~~lt~f~v~i-----~~n~~gl~~---~~~~~~~~l~pg~~~~~~v~i~~~~~ 714 (860)
|.-+.+.+.|+|.++.++.++.+.+ .-+ |+.. ........|+||+..+..+.+...+.
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt--G~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT--GLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT--TTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEEC--CcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 4567899999999999999977655 221 5532 11223558999999999998877765
No 266
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=33.80 E-value=1.5e+02 Score=25.77 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=42.5
Q ss_pred cCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcC--CChhHHHHHHHHHHHHhh
Q 002996 91 KDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD--NNPMVVANAVAALAEIEE 149 (860)
Q Consensus 91 ~d~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D--~d~~V~~~al~~l~~i~~ 149 (860)
.+.+..+|..|+-.+..+++.+.+.... ..+...+.+.+.| +.......|+..|.++.+
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3568899999999999999875543321 1355666666665 456788889888888844
No 267
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.46 E-value=3.2e+02 Score=34.54 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHHHhhChhhhhc--cceEEEe-ccCCcHHHHHHHHHHHHHhcCc
Q 002996 250 AEPEIQYVALRNINLIVQRRPTILAH--EIKVFFC-KYNDPIYVKMEKLEIMIKLASD 304 (860)
Q Consensus 250 ~~~niry~aL~~l~~l~~~~p~~~~~--~~~~~~~-l~~d~~~Ik~~~L~lL~~l~~~ 304 (860)
-+|+||.+.+..|..=.+.+|+.|-. +++.+=- +.|....||++.+.+|..|-..
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 47999999999999999999998743 5665543 5566689999999999888654
No 268
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=33.20 E-value=59 Score=22.58 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=25.1
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 119 RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 119 ~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
.+.++.|.++|.+.|+.++.+|+.+|..|.
T Consensus 11 ~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 11 AGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 356788889998889999999999988764
No 269
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.19 E-value=2.9e+02 Score=33.30 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=46.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHH
Q 002996 335 RCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKA 402 (860)
Q Consensus 335 ~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~ 402 (860)
.+..+|.++.+|+++++..+...-...-.+-+...+..++..||+.....+..++..=.+++..+.+.
T Consensus 575 ~~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~ 642 (667)
T KOG2286|consen 575 HFFRKYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKK 642 (667)
T ss_pred HHHHHhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHH
Confidence 34455656788888887776665443323334446677888899999888888887666777666554
No 270
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=32.67 E-value=6.2e+02 Score=26.75 Aligned_cols=82 Identities=15% Similarity=0.266 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhHHHHH
Q 002996 292 MEKLEIMIKLASDRNIDQVLLEFKEYAT---EVDVDFVRKAVRAIGRCAIKL-ERAAERCISVLLELIKIKVNYVVQEAI 367 (860)
Q Consensus 292 ~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~---~~d~~~~~~~i~~I~~la~k~-~~~~~~~v~~ll~ll~~~~~~v~~e~i 367 (860)
...-+.|..+|+..+...+-+=+..|++ ....+|.+.++..| .+.| |......+..++.+|..+...+...+.
T Consensus 133 ~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l---~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 133 IEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYL---REAFFPDHEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHH---HHHhCchhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 3444677777876555555555555553 34567888888777 4555 566678899999999988888888888
Q ss_pred HHHHHHHHh
Q 002996 368 IVIKDIFRR 376 (860)
Q Consensus 368 ~~l~~i~~~ 376 (860)
.+++-++..
T Consensus 210 ~iL~~ll~~ 218 (262)
T PF14225_consen 210 QILKVLLPH 218 (262)
T ss_pred HHHHHHhcc
Confidence 888877754
No 271
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=32.07 E-value=82 Score=30.41 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002996 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (860)
Q Consensus 92 d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i 147 (860)
...+-||-.|.+++.|+++..++...+ .+.+.+..++.+.+..-...++.++..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~l 70 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTAL 70 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 467789999999999998777766553 4556677777654444444555555555
No 272
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=31.72 E-value=3.9e+02 Score=24.17 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCC-----hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhc--
Q 002996 41 PDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR-----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-- 112 (860)
Q Consensus 41 ~el~~L~in~l~kDl~-~~n~~ir~lALr~l~~i~-----~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~-- 112 (860)
.+...-+..++.+-|+ +..+..|+.|.--++.+. .+++++.++..|.+....... .|.|.+|+..+++..
T Consensus 1 E~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~ 78 (121)
T PF12397_consen 1 EDILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQEN 78 (121)
T ss_pred CcHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcccc
Q ss_pred ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHh
Q 002996 113 AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (860)
Q Consensus 113 p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l 170 (860)
.+.+++ ..++.++.-++ ....+.++.+... +.+++..+
T Consensus 79 ~~~lp~----~~~~~l~~~~~------l~~~L~~l~~~~~----------i~~fl~~l 116 (121)
T PF12397_consen 79 VDSLPR----KVFKALLKLPD------LIELLSELSEKYD----------IDKFLRAL 116 (121)
T ss_pred cccCCH----HHHHHHHcCcc------HHHHHHHHHhcCC----------HHHHHHHH
No 273
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=31.47 E-value=1.5e+03 Score=31.22 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=62.5
Q ss_pred HhhhHHHhhc--CCChhHHHHHHHHHHHHHhhChhhh-hccceEEEec----cCCcHHHHHHHHHHHHHhcCc-------
Q 002996 239 KMAPPLVTLL--SAEPEIQYVALRNINLIVQRRPTIL-AHEIKVFFCK----YNDPIYVKMEKLEIMIKLASD------- 304 (860)
Q Consensus 239 ~~~~~L~~ll--s~~~niry~aL~~l~~l~~~~p~~~-~~~~~~~~~l----~~d~~~Ik~~~L~lL~~l~~~------- 304 (860)
....++..++ +.+.++|-.+|+++..|+..+.+-+ +.+-.+|..+ .++...|-+.+.+.+-.++++
T Consensus 1182 efLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~ 1261 (1780)
T PLN03076 1182 EFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITE 1261 (1780)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4456777766 3577999999999999988665433 2232233222 244577888888887765443
Q ss_pred ---ccHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhh
Q 002996 305 ---RNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKL 340 (860)
Q Consensus 305 ---~Nv~~Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~ 340 (860)
+++...|+-|.+|.... +.++.-.++.-+..|+.++
T Consensus 1262 ~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1262 TETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred cchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 56777777777777532 3444444444444444443
No 274
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=31.42 E-value=99 Score=22.75 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=26.8
Q ss_pred EEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEE
Q 002996 662 MLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLL 707 (860)
Q Consensus 662 l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v 707 (860)
|.|+|+++.++.--.++-. -|=.... ..-..|+||++....+
T Consensus 2 F~~~N~g~~~L~I~~v~ts---CgCt~~~-~~~~~i~PGes~~i~v 43 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTS---CGCTTAE-YSKKPIAPGESGKIKV 43 (45)
T ss_pred EEEEECCCCcEEEEEeeEc---cCCEEee-CCcceECCCCEEEEEE
Confidence 7899999998877776543 2321111 1224789999877665
No 275
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=31.14 E-value=8.7e+02 Score=27.99 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=13.0
Q ss_pred ccCCcHHHHHHHHHHHHH
Q 002996 283 KYNDPIYVKMEKLEIMIK 300 (860)
Q Consensus 283 l~~d~~~Ik~~~L~lL~~ 300 (860)
..+.+..+|.++|+++..
T Consensus 446 ~~~~~~~vRi~aL~~l~e 463 (464)
T PF11864_consen 446 NRDRRSEVRIKALDVLEE 463 (464)
T ss_pred CCCCCchHHHHHHHHHhh
Confidence 446667888888888754
No 276
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=31.08 E-value=6.1e+02 Score=27.99 Aligned_cols=145 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCC---CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhc------CC
Q 002996 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMG------CI 73 (860)
Q Consensus 3 ~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~---~el~~L~in~l~kDl~~~n~~ir~lALr~l~------~i 73 (860)
+.++.-.+|-.|++.+-+++...++.++--+..-..-+ |-+...+...+..-+.. |-..-.-.++.+. +|
T Consensus 172 LS~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 172 LSKELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred cCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCC
Q ss_pred ChhhhHHHHHHHHHhhh----------cCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH-----HhhcCCChhH-H
Q 002996 74 RVDKITEYLCDPLQRCL----------KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK-----DLISDNNPMV-V 137 (860)
Q Consensus 74 ~~~e~~~~l~~~v~~~l----------~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~-----~lL~D~d~~V-~ 137 (860)
...--+-.+++.+..|+ .+.+..+|.-|+..+..+++.+...... +.+++. .+++...+.. .
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~--l~~ri~~tl~k~l~d~~~~~~~~ 328 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNT--LQPRITRTLLKALLDPKKPLTTH 328 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHHcCCCCCcchh
Q ss_pred HHHHHHHHHHhhc
Q 002996 138 ANAVAALAEIEEN 150 (860)
Q Consensus 138 ~~al~~l~~i~~~ 150 (860)
..|+..|..+...
T Consensus 329 YGAi~GL~~lG~~ 341 (343)
T cd08050 329 YGAIVGLSALGPE 341 (343)
T ss_pred hHHHHHHHHhCcc
No 277
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=30.34 E-value=9.4e+02 Score=28.14 Aligned_cols=44 Identities=9% Similarity=0.013 Sum_probs=28.0
Q ss_pred HHHHHHhccCCCCcccee---ecC--CCccCCHHHHHHHHHhcCceeee
Q 002996 757 GSFLETWRSLPDSNEVLK---DLP--GVVVSNVEATLDLLAASNMFFIA 800 (860)
Q Consensus 757 ~~F~~~W~~l~~~~E~~~---~~~--~~~~~~~~~~~~~l~~~~~~~v~ 800 (860)
+....-|+-|+..+-.+. .++ -....|.+.+...|...|||-|-
T Consensus 657 q~L~~~W~~L~~~~~~Sf~t~miTs~FPq~KD~~~L~~EL~e~GFfdvF 705 (851)
T KOG3723|consen 657 QFLRALWEKLQAGGAHSFETAMMTSTFPQQKDLDQLQLELEEVGFFDVF 705 (851)
T ss_pred HHHHHHHHHccccccccchhhHhhhcCCCcccHHHHHHHHHhcCceEEE
Confidence 345678999986433322 111 12235778888899988998775
No 278
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=30.27 E-value=8.8e+02 Score=27.76 Aligned_cols=156 Identities=16% Similarity=0.249 Sum_probs=82.6
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCCh------hhhHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhh----cccccc
Q 002996 49 NTFVKDSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI----NAELVE 117 (860)
Q Consensus 49 n~l~kDl~~~n~~ir~lALr~l~~i~~------~e~~~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~----~p~~~~ 117 (860)
..+.++-...|+++--.-.|.++-++. ..+++.+...+....+. +||.-=---..++.-+.+. +|+.+.
T Consensus 33 ~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~ 112 (435)
T PF03378_consen 33 ALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVS 112 (435)
T ss_dssp HHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---
T ss_pred HHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHH
Confidence 344555557899988888888887652 34455555555555555 6776666666666666554 444222
Q ss_pred --cccHHHHHHHhhcCCChhH---HHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhH----HHHHHHHHHhc
Q 002996 118 --DRGFLESLKDLISDNNPMV---VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG----QVFILDALSRY 188 (860)
Q Consensus 118 --~~~~~~~l~~lL~D~d~~V---~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~----q~~il~~L~~~ 188 (860)
+..+.+.+...|...=... +...++.+.|..+.. .. ++.+..|+..|-.+.-|- .--+.|+|..|
T Consensus 113 ~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~--~~----p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~ 186 (435)
T PF03378_consen 113 QFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSS--PL----PDAYKQLFPPLLSPALWERRGNIPALVRLLQAY 186 (435)
T ss_dssp HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CC----cHHHHHHHHHHcCcchhccCCCcCcHHHHHHHH
Confidence 1246677777775322222 334455555655411 11 123444444454566674 24466777776
Q ss_pred cccCHHH------HHHHHHHHhhhhcCC
Q 002996 189 KAADARE------AENIVERVTPRLQHA 210 (860)
Q Consensus 189 ~~~~~~~------~~~ll~~v~~~l~~~ 210 (860)
...++.. ...++.....++.++
T Consensus 187 i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 187 IKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp HHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred HHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 6554332 245667666777664
No 279
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=30.00 E-value=8.8e+02 Score=27.68 Aligned_cols=330 Identities=15% Similarity=0.178 Sum_probs=160.8
Q ss_pred hcCCCC-HHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q 002996 54 DSQDPN-PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (860)
Q Consensus 54 Dl~~~n-~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~ 132 (860)
...+.+ +.+.-+=++.++.+..++.++++..-+-+++.+....++- +......+|+. |.+.+. +|+..
T Consensus 45 ~~~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~-----f~~~~~~~~~~-----~~~fl~-lL~~~ 113 (429)
T cd00256 45 EILDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL-----FHDDALLKKKT-----WEPFFN-LLNRQ 113 (429)
T ss_pred HHhcccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH-----HHHHhhccccc-----hHHHHH-HHcCC
Confidence 333444 6666777889999999999999999999999884332221 11111123443 334444 66656
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCchh-ccHHHHHHHHHHhccC-ChhHHHHHHHHHHhccccCH-HHH---HHHHHHHhhh
Q 002996 133 NPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNEC-TEWGQVFILDALSRYKAADA-REA---ENIVERVTPR 206 (860)
Q Consensus 133 d~~V~~~al~~l~~i~~~~~~~~~~-~~~~~~~~Ll~~l~~~-~~w~q~~il~~L~~~~~~~~-~~~---~~ll~~v~~~ 206 (860)
|.-+...|+..+..+...++..... .....+..|.+.+... +.=++-..+++|+.+...+. +.. .+.+..+.+.
T Consensus 114 d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~ 193 (429)
T cd00256 114 DQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKL 193 (429)
T ss_pred chhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHH
Confidence 7677777777776665443221111 1112233445555432 23344444566655443321 111 1134455566
Q ss_pred hcCCC--hHHHHHH-HHHHHhhhccChHHHHHHH-HHhhhHHHhhcC-CCh-hHHHHHHHHHHHHHhhC----------h
Q 002996 207 LQHAN--CAVVLSA-MILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEP-EIQYVALRNINLIVQRR----------P 270 (860)
Q Consensus 207 l~~~n--~aVv~~a-~~~~~l~~~~~~~~~~~~~-~~~~~~L~~lls-~~~-niry~aL~~l~~l~~~~----------p 270 (860)
|+... .-..|++ .+++.+.+ .++...... ..+++.|+.++. +.- -+--+++.++..++... +
T Consensus 194 L~~~~~~~Ql~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~ 271 (429)
T cd00256 194 LSNATLGFQLQYQSIFCIWLLTF--NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAAL 271 (429)
T ss_pred HhhccccHHHHHHHHHHHHHHhc--cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHH
Confidence 65422 2356776 34555533 333222111 234556666663 211 23334455555444421 1
Q ss_pred hhhhc----cceEE-EeccCC-cHHHHHHHH--HHHHHhcCcccHHHHHHHHH-Hhhh----hccHHHHHHHHHHHHHHH
Q 002996 271 TILAH----EIKVF-FCKYND-PIYVKMEKL--EIMIKLASDRNIDQVLLEFK-EYAT----EVDVDFVRKAVRAIGRCA 337 (860)
Q Consensus 271 ~~~~~----~~~~~-~~l~~d-~~~Ik~~~L--~lL~~l~~~~Nv~~Iv~eL~-~y~~----~~d~~~~~~~i~~I~~la 337 (860)
.++.. .+..+ ...++| |.+--...| .+--.+-.-+++++...|+. ..+. ..+..|=++=+.
T Consensus 272 ~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~------ 345 (429)
T cd00256 272 QMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENAD------ 345 (429)
T ss_pred HHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHH------
Confidence 11211 11112 122333 333222222 22222233456777777775 2232 234567655443
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhCcccHHHH-----HHHHHHhhccCCchHHHHHH
Q 002996 338 IKLERAAERCISVLLELIKIKVNY-VVQEAIIVIKDIFRRYPNTYESI-----IATLCESLDTLDEPEAKASM 404 (860)
Q Consensus 338 ~k~~~~~~~~v~~ll~ll~~~~~~-v~~e~i~~l~~i~~~~p~~~~~~-----i~~L~~~l~~~~~~~~~~~~ 404 (860)
||....-..+..|.++|..+.+. +..=+..=|...++.+|+-+.-+ =..+++.+.. .+++++.-+
T Consensus 346 -kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h-~d~~Vr~eA 416 (429)
T cd00256 346 -RLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNH-EDPNVRYEA 416 (429)
T ss_pred -HHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcC-CCHHHHHHH
Confidence 44444445678899999655443 33333456788888888754221 1234555544 456665433
No 280
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=29.95 E-value=1.3e+02 Score=30.06 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=50.9
Q ss_pred EEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEE
Q 002996 659 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYF 738 (860)
Q Consensus 659 ~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 738 (860)
.=.+.+.|+++.++ +|.+.-..+.+ + ..-++.+.|.|++.+++.|.+.-.+.... | .|.|.+-+-
T Consensus 20 ke~~sv~Nnspepv-gfKVKTTaPK~-Y--cVRPN~g~Iep~stv~VeVilq~l~eEpa-p-----dfKCrdKFL----- 84 (242)
T COG5066 20 KEMFSVQNNSPEPV-GFKVKTTAPKD-Y--CVRPNMGLIEPMSTVEVEVILQGLTEEPA-P-----DFKCRDKFL----- 84 (242)
T ss_pred ceeeEeecCCCCce-eEEeeccCCcc-e--eEcCCCceeccCCeeEEEEEeeccccCCC-C-----CccccceeE-----
Confidence 34456678887774 56665443321 1 01245678999998888776543332222 2 466766331
Q ss_pred EeccccccccccCCCCChHHHHHHhccCCCC
Q 002996 739 NDKISLHVLFTEDGRMERGSFLETWRSLPDS 769 (860)
Q Consensus 739 ~l~~Pl~~~~~~~~~~~~~~F~~~W~~l~~~ 769 (860)
...+++ +-.++..+|...|.++...
T Consensus 85 iqs~~~------~~~l~g~d~ad~wt~~sk~ 109 (242)
T COG5066 85 IQSYRF------DWRLSGSDFADHWTSSSKK 109 (242)
T ss_pred EEEecc------ChhhccchHHHHHHhhccc
Confidence 111111 3345568999999998764
No 281
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=29.84 E-value=2.5e+02 Score=32.54 Aligned_cols=135 Identities=14% Similarity=0.193 Sum_probs=82.4
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHh-hcc--cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC-CCch
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYD-INA--ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS-RPIF 156 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~-~~p--~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~-~~~~ 156 (860)
.+...+.++|.++.-.|.-.+..++....- .+| +-+-+.++++.|.+++..+|....++.+-++.++.-+.- ...|
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 345556778888777777777766655432 222 112234789999999988888888888888887654421 1224
Q ss_pred hccHHH-HHHHHHHhccCChhHHHHHHHHHHhccccCHH-H-----------HHHHHHHHhhhhcCCChHHH
Q 002996 157 EITSHT-LSKLLTALNECTEWGQVFILDALSRYKAADAR-E-----------AENIVERVTPRLQHANCAVV 215 (860)
Q Consensus 157 ~~~~~~-~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~-~-----------~~~ll~~v~~~l~~~n~aVv 215 (860)
+++.+. +.+++...++++=-.|..++++|+.+...... | .+-+.+.+...+...||.-.
T Consensus 511 ~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i 582 (743)
T COG5369 511 KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI 582 (743)
T ss_pred hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence 443332 45666655554433588999999987653211 1 11244555566666777533
No 282
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.58 E-value=1.4e+02 Score=29.45 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=39.2
Q ss_pred HHhcCCC--hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh
Q 002996 68 RTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI 129 (860)
Q Consensus 68 r~l~~i~--~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL 129 (860)
..|..|. +||....|...|..-.++ +.| -+-|-+|++|+|+.+|+......-...+.+.|
T Consensus 12 e~l~ginryNPE~latLe~yVq~qak~-ntY-dleanL~vLkLYQfnP~~~nt~itaqILlKaL 73 (217)
T KOG3252|consen 12 ELLVGINRYNPENLATLENYVQAQAKE-NTY-DLEANLAVLKLYQFNPEFFNTTITAQILLKAL 73 (217)
T ss_pred HHHHhcccCChhHHHHHHHHHHHHHhc-ccc-chhHHHHHHHHHhcCHHHhhhHHHHHHHHHHH
Confidence 3444443 688888887777755544 333 47899999999999999876432233343333
No 283
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=29.50 E-value=9.7e+02 Score=28.45 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=58.7
Q ss_pred CcccHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHH--------------HHH
Q 002996 303 SDRNIDQVLLEFKEYA-TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ--------------EAI 367 (860)
Q Consensus 303 ~~~Nv~~Iv~eL~~y~-~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~--------------e~i 367 (860)
+.+ .+.+|+.++.+- ...+.++++..+.=++.|+...+.....|++.+++.+.-....... .+-
T Consensus 68 d~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH 146 (563)
T PF05327_consen 68 DSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVH 146 (563)
T ss_dssp -SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HH
T ss_pred hhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHH
Confidence 444 778888887663 2567888888888888888888888888888888877654433222 234
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHhhccCC
Q 002996 368 IVIKDIFRRYPNTYESIIATLCESLDTLD 396 (860)
Q Consensus 368 ~~l~~i~~~~p~~~~~~i~~L~~~l~~~~ 396 (860)
..++.|++-.|.....+...|.+.+....
T Consensus 147 ~~L~~Il~lvP~s~~~L~~~l~~~FP~~~ 175 (563)
T PF05327_consen 147 DALQKILRLVPTSPSFLIPILVQNFPHKR 175 (563)
T ss_dssp HHHHHHHHH-GGGHHHHHHHHHHTS--TT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCcCCC
Confidence 46777887788777766666666554333
No 284
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.39 E-value=3.2e+02 Score=29.76 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHHHH-----HHHHHhhhcCCChHHHHHHH
Q 002996 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYL-----CDPLQRCLKDDDPYVRKTAA 102 (860)
Q Consensus 29 ~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-~~e~~~~l-----~~~v~~~l~d~~~~VRk~A~ 102 (860)
+|=|...++++. .+.-.+-.++--+. |.+-.-+..+|+.+. ..|++..+ +..+.+++.|++..=-|+++
T Consensus 230 ah~hAr~ia~e~--~l~~L~Eal~A~~d---p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 230 AHGHARTIAKEG--ILTALTEALQAGID---PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred hhHHHHHHHHhh--hHHHHHHHHHccCC---ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Q ss_pred HHHHHHHhh------cccccccccHHHHHHHhhc--CCChhHHHHHHHHHHHHhhcCCC
Q 002996 103 ICVAKLYDI------NAELVEDRGFLESLKDLIS--DNNPMVVANAVAALAEIEENSSR 153 (860)
Q Consensus 103 ~~l~kl~~~------~p~~~~~~~~~~~l~~lL~--D~d~~V~~~al~~l~~i~~~~~~ 153 (860)
-.++++.+. ..+.+-+.+-.+.|..++. ..||.|+..++..+..++-..|+
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd 363 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD 363 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc
No 285
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=29.29 E-value=1.9e+02 Score=31.69 Aligned_cols=49 Identities=16% Similarity=0.416 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcc-HHHHHHHHHHHH
Q 002996 286 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVD-VDFVRKAVRAIG 334 (860)
Q Consensus 286 d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d-~~~~~~~i~~I~ 334 (860)
++......+++++-+--..+.+++|+++|.+|-.+.| .++..+.++.|.
T Consensus 257 ~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~ 306 (401)
T KOG1684|consen 257 DESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLK 306 (401)
T ss_pred CccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 3444555688888877788899999999988864333 456666666554
No 286
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=28.89 E-value=4.8e+02 Score=25.16 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.5
Q ss_pred hhHHHhhcC--CChhHHHHHHHHHHHHHhhChhhhh
Q 002996 241 APPLVTLLS--AEPEIQYVALRNINLIVQRRPTILA 274 (860)
Q Consensus 241 ~~~L~~lls--~~~niry~aL~~l~~l~~~~p~~~~ 274 (860)
.+.|.++|. .+.++|.-+++.|..|..-+|...+
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 345667773 4578999999999999998886654
No 287
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=28.70 E-value=1.1e+03 Score=28.58 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=50.5
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
.+.+..-|.+.+|.|.-.|+.-+.++..-+-+.- ..-+=++.|..+|+..+..|..+|+.+|-.+.-.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~ 305 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFG 305 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcc
Confidence 3455666779999999888888877765443322 2224468888999999999999999999887644
No 288
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=28.21 E-value=8.1e+02 Score=26.72 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=69.1
Q ss_pred HHHhHHHHHhcCCChhhhHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHH
Q 002996 61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (860)
Q Consensus 61 ~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~-d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~ 139 (860)
..|.+..+.|+.+....+.+.+...+...+. +.|.-....++-++.+-+...-..++ ...++.+.+-+.|+.+.|...
T Consensus 2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~-~~~~~~~~kGl~~kk~~vR~~ 80 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELP-KKVVDAFKKGLKDKKPPVRRA 80 (339)
T ss_pred cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCC-HHHHHHHHHHhcCCCCcHHHH
Confidence 3567777777777654445555555555554 48888888888888776655522233 258899999999999888777
Q ss_pred HHHHHHHHhhcCC-CCchhccHHHHHHHHHHhc
Q 002996 140 AVAALAEIEENSS-RPIFEITSHTLSKLLTALN 171 (860)
Q Consensus 140 al~~l~~i~~~~~-~~~~~~~~~~~~~Ll~~l~ 171 (860)
-+..+.++....+ ..........+..|++.+.
T Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 81 WLLCLGEALWESPNSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHHH
Confidence 7777776654111 1123344445555555553
No 289
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=28.01 E-value=1.3e+02 Score=26.64 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 002996 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (860)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~ 127 (860)
.++.+...+..+++|-+|.||.-|..-+--+.+.+|+.+-...|...+..
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~ 57 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPN 57 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHH
Confidence 35778888999999999999999999999999999998322356665554
No 290
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=27.99 E-value=2.9e+02 Score=31.56 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=76.0
Q ss_pred cCCChHHHHHHHHHHHHHHhhcccc---------ccc--ccHHHHHHHh-hcCCChhHHHHHHHHHHHHhhcC-------
Q 002996 91 KDDDPYVRKTAAICVAKLYDINAEL---------VED--RGFLESLKDL-ISDNNPMVVANAVAALAEIEENS------- 151 (860)
Q Consensus 91 ~d~~~~VRk~A~~~l~kl~~~~p~~---------~~~--~~~~~~l~~l-L~D~d~~V~~~al~~l~~i~~~~------- 151 (860)
.|...-||..|..|+..+.+.-|.- +++ +.=.+.+..| |+|.++.+.+.|+.++..|....
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3445668888888887766543221 111 0112333333 68999999998888777765432
Q ss_pred ---CCCchh-c-------cHHHHHHHHHHh-ccCChhHHHHHHHHHHhccccCHH---H---HHHHHHHHhhhhcCCChH
Q 002996 152 ---SRPIFE-I-------TSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAR---E---AENIVERVTPRLQHANCA 213 (860)
Q Consensus 152 ---~~~~~~-~-------~~~~~~~Ll~~l-~~~~~w~q~~il~~L~~~~~~~~~---~---~~~ll~~v~~~l~~~n~a 213 (860)
++..|. + +...++-|+-.| .+.++-....++++|+.+....+- + ..++.+.+.+.++|+++.
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 111111 1 112223333333 355666667778888776543331 2 245677888999999988
Q ss_pred HHHHH-HHHHHh
Q 002996 214 VVLSA-MILQQM 224 (860)
Q Consensus 214 Vv~~a-~~~~~l 224 (860)
|..++ .++.++
T Consensus 166 v~vs~l~~~~~~ 177 (728)
T KOG4535|consen 166 VRVSSLTLLGAI 177 (728)
T ss_pred hhhHHHHHHHHH
Confidence 77776 344433
No 291
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=1e+03 Score=27.76 Aligned_cols=278 Identities=16% Similarity=0.157 Sum_probs=143.1
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhc--CCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHH
Q 002996 46 LAVNTFVKDSQDPNPLIRALAVRTMG--CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLE 123 (860)
Q Consensus 46 L~in~l~kDl~~~n~~ir~lALr~l~--~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~ 123 (860)
+...++.|=+-...++..+-||--++ .+++.+-.+....-+..-+.+++.-.|-.|++++.-.|.-.. -+ +..+
T Consensus 413 ~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~--~e--evl~ 488 (881)
T COG5110 413 KGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQ--AE--EVLE 488 (881)
T ss_pred hhHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCc--HH--HHHH
Confidence 34567888888888888888876543 556666666666777888889999999999999998885321 11 3566
Q ss_pred HHHHhhcCCChhHHHHHHHH--HHHHhhcCCCCchhccHHHHHHHHHHh--ccCChhHHHHHHHHHHhcc-ccCH-HHHH
Q 002996 124 SLKDLISDNNPMVVANAVAA--LAEIEENSSRPIFEITSHTLSKLLTAL--NECTEWGQVFILDALSRYK-AADA-REAE 197 (860)
Q Consensus 124 ~l~~lL~D~d~~V~~~al~~--l~~i~~~~~~~~~~~~~~~~~~Ll~~l--~~~~~w~q~~il~~L~~~~-~~~~-~~~~ 197 (860)
.|..+.-+.|.-+-..++++ |-.+--..|. =++....+..++.+= ..-+.|..-..|.+-..|. +.|. ++..
T Consensus 489 lL~Pi~~std~pie~~~~asltLg~vFvGtcn--gD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~d~v~ 566 (881)
T COG5110 489 LLQPIMFSTDSPIEVVFFASLTLGSVFVGTCN--GDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQVDDVE 566 (881)
T ss_pred HhhhhhcCCCCcHHHHHHHHHhhhheEeeccC--chHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccchhHHHH
Confidence 67777666664222222332 2233222221 123333445555432 2347898877777665543 3331 1112
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHhhhccChH--HHHHHHHHhhhHHH-hhcCCChhHHHHHHHHHHHHHhhC---hh
Q 002996 198 NIVERVTPRLQHANCAVVLSAMILQQMELITSTD--VVRNLCKKMAPPLV-TLLSAEPEIQYVALRNINLIVQRR---PT 271 (860)
Q Consensus 198 ~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~--~~~~~~~~~~~~L~-~lls~~~niry~aL~~l~~l~~~~---p~ 271 (860)
.-+..+.-.+. +-..|.... ..+...-+ .++.+..-....=. ++-+.+..+.-.++-....++.-. .+
T Consensus 567 eti~aIeg~ls-~~~eiLv~~-----c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~e 640 (881)
T COG5110 567 ETIMAIEGALS-KHEEILVKG-----CQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSE 640 (881)
T ss_pred HHHHHhcchhh-hhHHHHHhh-----ceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHH
Confidence 22222211111 011111111 11111100 01111000000000 000123445555554444444321 22
Q ss_pred hhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHH-HHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 002996 272 ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNID-QVLLEFKEYATEVDVDFVRKAVRAIGRCAI 338 (860)
Q Consensus 272 ~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~-~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~ 338 (860)
++-+|.... ..-+...| |+++-+-+.+..++|=+ .|++-|..|..+.|-+.....|.++|-|+.
T Consensus 641 MvlRhf~h~--mhyg~~hi-R~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v~~ntIfamGLiGA 705 (881)
T COG5110 641 MVLRHFSHS--MHYGSSHI-RSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGA 705 (881)
T ss_pred HHHHHhhhH--hhcCcHHH-HHHHHHHHhcccCCCcchHHHHHHHHhccccchhHHHHHHHHhhcccc
Confidence 333332211 11233455 45677788888888865 688888899999998888888888876653
No 292
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=27.55 E-value=89 Score=34.85 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=54.5
Q ss_pred HHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 002996 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (860)
Q Consensus 81 ~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~ 149 (860)
.+..-+.++|.. .+|.+---|+.=+....+.+|+. ++.-+-.+++.+||+.+||.|..+|+.++..+.-
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 345556667765 55999999999999999999974 3333556788899999999999999999877643
No 293
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.51 E-value=4.4e+02 Score=33.36 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=74.7
Q ss_pred CcHHHHHHHHHHhhc-----CCCCHHHHhHHHHHhcCCC--hhhhH--HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh
Q 002996 41 PDLAILAVNTFVKDS-----QDPNPLIRALAVRTMGCIR--VDKIT--EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (860)
Q Consensus 41 ~el~~L~in~l~kDl-----~~~n~~ir~lALr~l~~i~--~~e~~--~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~ 111 (860)
.|...=++|.+-+-+ .|-.|.||+-.+..||.=. -|+.. ...+.++-=.|.|.+.-||++.+-++.++|.+
T Consensus 277 ~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 277 QDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 343444555554443 6778999999999998532 24433 45566777788999999999999999999988
Q ss_pred cccc--ccc--ccHHHHHHHhh-cCCChhHHHHHHHHHHHH
Q 002996 112 NAEL--VED--RGFLESLKDLI-SDNNPMVVANAVAALAEI 147 (860)
Q Consensus 112 ~p~~--~~~--~~~~~~l~~lL-~D~d~~V~~~al~~l~~i 147 (860)
+-.. ++. ..|.+++.+|. .|.|.+|.+.++..+...
T Consensus 357 ~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 357 DEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 4322 111 24777888887 577788887777666554
No 294
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.59 E-value=2.2e+02 Score=34.62 Aligned_cols=132 Identities=16% Similarity=0.167 Sum_probs=76.1
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcC
Q 002996 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD 92 (860)
Q Consensus 13 ~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d 92 (860)
+.+.++.|+|..+-.=+==.+...+...-| -..+|.+..=.-+.+. ..|+..|++++.|- -..+...+-+.+..
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~y~~~t~s---~~~~~il~~~~~P~-~K~~~~~l~~~~~~ 81 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSDRE--PWLVNGLVDYYLSTNS---QRALEILVGVQEPH-DKHLFDKLNDYFVK 81 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhccch--HHHHHHHHHHHhhcCc---HHHHHHHHhcCCcc-HHHHHHHHHHHHcC
Confidence 455566776654322111122222222222 1445666543333332 23778888888761 12334445555554
Q ss_pred CChHHHHHHHHHHHHHHhhcccccc---cccHHHHHHH-hhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 93 DDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKD-LISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 93 ~~~~VRk~A~~~l~kl~~~~p~~~~---~~~~~~~l~~-lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
+ --|..|+.-+..+.+..|.-+. +..+++.|.+ |..|.+..|+.+|+.+|.-+.+.-|
T Consensus 82 ~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 82 P--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred c--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 3 4588888888899988775332 2345555544 4469999999999999988877655
No 295
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.18 E-value=1.1e+03 Score=27.37 Aligned_cols=139 Identities=18% Similarity=0.152 Sum_probs=81.7
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccc---cHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-Cc
Q 002996 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDR---GFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PI 155 (860)
Q Consensus 80 ~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~---~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~-~~ 155 (860)
..++..+-.-..|++.-+|.-|+-++..++...|+.+... ...-.+..|.++.|..|+.-++..|.-+.+.... ..
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 4455555566678999999999999999999989877531 2233445566677899999888888776654221 11
Q ss_pred hhccHHHHHHHHHHhccCCh---hHHHHHHHHHHhccccCHHHH--HHHHHHHhhhh---cCCChHHHHHH
Q 002996 156 FEITSHTLSKLLTALNECTE---WGQVFILDALSRYKAADAREA--ENIVERVTPRL---QHANCAVVLSA 218 (860)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~~~~---w~q~~il~~L~~~~~~~~~~~--~~ll~~v~~~l---~~~n~aVv~~a 218 (860)
-....+..-++.+...+.++ ..-..++..|..|.-..-++. +.+.....+++ +..|+-|.-++
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 22222333444444333222 234556666777764433322 23444444444 55777554444
No 296
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=26.18 E-value=5.9e+02 Score=30.77 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=47.8
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC-CChhHHHHHHHHHHHH
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEI 147 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i 147 (860)
++..-+.....++++.+|+.+.--+.++....|+... ...|.++|.+ ..+++.+.++..+-+.
T Consensus 442 ~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~r----f~~i~dlLe~c~~~~~k~~~I~~lKd~ 505 (633)
T PF08568_consen 442 FLQALLLISVYCPSPELRKIAFTLLTRILHLFPEETR----FKFIRDLLENCPFESLKASAIGWLKDE 505 (633)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHhH----HHHHHHHHhcCCCHhHHHHHHHHHHHH
Confidence 3333344444679999999999999999999998653 4677778764 6788999998888764
No 297
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=26.06 E-value=4.7e+02 Score=30.47 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=35.8
Q ss_pred HHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-CHHHHHHHHHhhCCCC
Q 002996 373 IFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPEE 432 (860)
Q Consensus 373 i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-~~~~~l~~~~~~~~~e 432 (860)
|.++.++.-+.++..|+..+.+.+.....-.++-+|..|+.... ...+.++.+...+..-
T Consensus 226 I~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p~~ 286 (851)
T KOG3723|consen 226 IKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLEMLKEIGERFPYL 286 (851)
T ss_pred HHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCc
Confidence 34556666666777777766665555555666667777765432 3455566665555443
No 298
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.54 E-value=5.2e+02 Score=27.10 Aligned_cols=68 Identities=19% Similarity=0.116 Sum_probs=38.1
Q ss_pred HHHHHhhhhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHhCcc
Q 002996 312 LEFKEYATEV--DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIV-IKDIFRRYPN 379 (860)
Q Consensus 312 ~eL~~y~~~~--d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~-l~~i~~~~p~ 379 (860)
+.|.+|+.+. +.-.|..+++++..++...+...+.++..+..++......-.+.+|.. +..++.-+|.
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~ 184 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPE 184 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHH
Confidence 3455555543 334566777888888877776667777777777665433333334432 2333333443
No 299
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.02 E-value=86 Score=29.69 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=36.1
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCC
Q 002996 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD 93 (860)
Q Consensus 49 n~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~ 93 (860)
+.+..=|.++|+.++.+||.||..-..+.+.+| -+.+.+++.|+
T Consensus 20 ~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY-~d~L~~Lldd~ 63 (141)
T PF07539_consen 20 DALLRLLSSRDPEVQKLALDCLLTWKDPYLTPY-KDNLENLLDDK 63 (141)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhH-HHHHHHHcCcc
Confidence 456667789999999999999999999988877 46777777664
No 300
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=24.76 E-value=1.1e+03 Score=27.02 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcc----CChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhh----cC-CChH---HHHHHHHHHHhhhc
Q 002996 160 SHTLSKLLTALNE----CTEWGQVFILDALSRYKAADAREAENIVERVTPRL----QH-ANCA---VVLSAMILQQMELI 227 (860)
Q Consensus 160 ~~~~~~Ll~~l~~----~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l----~~-~n~a---Vv~~a~~~~~l~~~ 227 (860)
...+.+|+..+.. -||+.---++|++..+...-..-+..+++.+...+ ++ +||. -.||++ -.+++..
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi-~~lir~~ 103 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI-GALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH-HHHHHHS
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH-HHHHHhc
Confidence 4556666666643 37777777888887765432223344444444433 22 4553 356661 1112322
Q ss_pred c--ChHHHHHHHHHhhhHHHhhcCCC-hhHHHHHHHHHHHHHhhCh-hhhhccce-EEEeccCCcHHHHHHHHHHHHHhc
Q 002996 228 T--STDVVRNLCKKMAPPLVTLLSAE-PEIQYVALRNINLIVQRRP-TILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLA 302 (860)
Q Consensus 228 ~--~~~~~~~~~~~~~~~L~~lls~~-~niry~aL~~l~~l~~~~p-~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~ 302 (860)
. +++...++-..+.+++...|..| .|.-=-+++.+..++..+| .-+.+.+. .|-++.++. +- -
T Consensus 104 ~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~----------lW--e 171 (435)
T PF03378_consen 104 CEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA----------LW--E 171 (435)
T ss_dssp -GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----------GG--G
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----------hh--c
Confidence 2 34545566666788888888654 4543344888888888887 33332222 333333222 11 2
Q ss_pred CcccHHHHHHHHHHhhhhccHHH
Q 002996 303 SDRNIDQVLLEFKEYATEVDVDF 325 (860)
Q Consensus 303 ~~~Nv~~Iv~eL~~y~~~~d~~~ 325 (860)
...|+..+++-|..|++.....+
T Consensus 172 ~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 172 RRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp STTTHHHHHHHHHHHHHHHGGG-
T ss_pred cCCCcCcHHHHHHHHHHhCchhh
Confidence 46799999999999987655444
No 301
>PF14961 BROMI: Broad-minded protein
Probab=24.73 E-value=7.6e+02 Score=31.86 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=54.6
Q ss_pred HHHHhhcCCCCH-HHHhHHHHHhcCCChhhhH-----HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccc
Q 002996 49 NTFVKDSQDPNP-LIRALAVRTMGCIRVDKIT-----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV 116 (860)
Q Consensus 49 n~l~kDl~~~n~-~ir~lALr~l~~i~~~e~~-----~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~ 116 (860)
|.+..-+.-.+| .+|--|+..||++...++. ..+...+..+|.|+++.++-++.--..|+|...|-.+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 334444444455 7999999999998766655 7899999999999999999999999999998887544
No 302
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=24.17 E-value=2.4e+02 Score=26.56 Aligned_cols=51 Identities=14% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCh----HHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002996 434 AQVQLQLLTATVKLFLKKPTEGP----QQMIQVVLNNATVETDNPDLRDRAYIYWRLL 487 (860)
Q Consensus 434 ~~v~~~iLta~~Kl~~~~p~~~~----~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll 487 (860)
......+|..+.+.|.+.|+- + ..-+|.+.+ |.. +.|++++++|...+.--
T Consensus 67 ~~~~~~~l~~~i~~F~r~pel-m~~~N~~FIQ~i~~-~~~-~~~~~~k~~A~~LY~~Y 121 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPEL-MISNNGAFIQLIAQ-AMT-HGDDEIKQKARDLYKKY 121 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTH-HHHTHHHHHHHHHH-HCC--TSCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhCHhH-HHHcccHHHHHHHH-HHH-hccHHHHHHHHHHHHHH
Confidence 445568999999999999963 2 123444444 443 34789999998766443
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.16 E-value=8.7e+02 Score=25.67 Aligned_cols=100 Identities=19% Similarity=0.281 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHhh--Chhhhhcc---ceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHH
Q 002996 253 EIQYVALRNINLIVQR--RPTILAHE---IKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVR 327 (860)
Q Consensus 253 niry~aL~~l~~l~~~--~p~~~~~~---~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~ 327 (860)
++|+.+|+.|....-. .++-+... ++.+..-+.+++.+...+++++.+..+.+-+..++.++..-+...+..| .
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~-~ 159 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF-D 159 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH-H
Confidence 6777777777655422 22222211 1222233456688889999999996666666677776665544333444 3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHH
Q 002996 328 KAVRAIGRCAIKLERAAERCISVLLE 353 (860)
Q Consensus 328 ~~i~~I~~la~k~~~~~~~~v~~ll~ 353 (860)
.++..|..++.+-++.+-.+++.++.
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 45666666777766666666655443
No 304
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=24.08 E-value=1.3e+03 Score=27.87 Aligned_cols=81 Identities=14% Similarity=0.215 Sum_probs=46.3
Q ss_pred HHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHhcccCCCChH-HHHHH
Q 002996 403 SMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKK-PTEGPQQMIQVVLNNATVETDNPD-LRDRA 480 (860)
Q Consensus 403 ~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~-p~~~~~~~i~~~l~~~~~~s~~~e-vrdRA 480 (860)
+.++.+|=+...+ .-|+++.|..++..-+.+.-+.|+..+.+...+. |.. +++++..+...+.. ..++ .+-|+
T Consensus 432 ~ylynF~ivs~~L--iydiI~kl~~~l~e~~ve~ll~ii~~~G~~LRkDDp~a-lk~~i~eiq~~a~~--a~~s~~~pR~ 506 (822)
T KOG2141|consen 432 SYLYNFGIVSCSL--IYDIIRKLAENLNETNVEALLTIIANCGFSLRKDDPLA-LKDIITEIQSKAAS--AKISAISPRL 506 (822)
T ss_pred HHHHHhhcccHHH--HHHHHHHHHhchhhhhHHHHHHHHHHccchhcCCChHH-HHHHHHHHHHHhhc--CCccccchHH
Confidence 3445555543322 3578888888887766665555554444444333 322 66777777666532 2233 47888
Q ss_pred HHHHHHhc
Q 002996 481 YIYWRLLS 488 (860)
Q Consensus 481 ~~y~~ll~ 488 (860)
+|...-++
T Consensus 507 rFmleti~ 514 (822)
T KOG2141|consen 507 RFMLETIS 514 (822)
T ss_pred HHHHHHHH
Confidence 87765543
No 305
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.84 E-value=1.1e+03 Score=26.91 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002996 434 AQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 487 (860)
Q Consensus 434 ~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll 487 (860)
..|++.+-.|++-+. ..|+. ..++|+-+++.-. ...|.++|+||.....-|
T Consensus 290 ~~V~Aa~A~A~v~l~-~lP~K-LnPiIrpLMdSIK-~Een~~LQ~rsA~slA~L 340 (441)
T PF12054_consen 290 VRVLAAAASALVALG-GLPKK-LNPIIRPLMDSIK-REENELLQQRSAESLARL 340 (441)
T ss_pred HHHHHHHHHHHHHhc-cCCCC-ccHHHHHHHHHhh-ccccHHHHHHHHHHHHHH
Confidence 444554444444443 34654 8899999999754 568899999998877554
No 306
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=23.13 E-value=3e+02 Score=27.35 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcC--CChHHHHHHH
Q 002996 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKTAA 102 (860)
Q Consensus 25 ~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d--~~~~VRk~A~ 102 (860)
.|.+.+=+= .+...+|+... .+.+-..-.|+....-|+..|..-...+...+ ..+|.. .++.||+-|+
T Consensus 29 ek~~lW~~R-~~l~~~p~aL~----~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A-----L~LL~~~f~~~~VR~yAv 98 (184)
T PF00613_consen 29 EKELLWKYR-YYLMNNPEALP----KLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA-----LELLSPNFPDPFVRQYAV 98 (184)
T ss_dssp HHHHHHHTH-HHHTTSGGGHH----HHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH-----HHCTSTT---HHHHHHHH
T ss_pred HHHHHHHCC-HHhhhCchHHH----HHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH-----HHHHHhhccHHHHHHHHH
Confidence 444444433 44455555222 33333444555555666666655333222221 233332 4466777666
Q ss_pred HHHHHHHhhcccccccccHHHHHHHhhc
Q 002996 103 ICVAKLYDINAELVEDRGFLESLKDLIS 130 (860)
Q Consensus 103 ~~l~kl~~~~p~~~~~~~~~~~l~~lL~ 130 (860)
-++-+ ..++.+. .+++.|.++|+
T Consensus 99 ~~L~~---~~d~~l~--~yLpQLVQaLr 121 (184)
T PF00613_consen 99 RRLES---LSDEELL--FYLPQLVQALR 121 (184)
T ss_dssp HHHCT---S-HHHHH--HHHHHHHHHGG
T ss_pred HHHHH---cCchHHH--HHHHHHHHHhe
Confidence 66543 2333333 26666666654
No 307
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=22.94 E-value=1.6e+02 Score=28.41 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=62.3
Q ss_pred CCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccc----ccccHHHHHHHhhc
Q 002996 58 PNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV----EDRGFLESLKDLIS 130 (860)
Q Consensus 58 ~n~~ir~lALr~l~~i~---~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~----~~~~~~~~l~~lL~ 130 (860)
..+.+|+.|+=.++.+- ..+..+.+.+.+...+.+...--...|+-++.-+|...|+.. ..+++.+.+..+..
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 45678888887777663 123335556666666665333345567777888888888754 34588899999988
Q ss_pred --CCChhHHHHHHHHHHHHhh
Q 002996 131 --DNNPMVVANAVAALAEIEE 149 (860)
Q Consensus 131 --D~d~~V~~~al~~l~~i~~ 149 (860)
.+|..+..+++-++..-+-
T Consensus 97 ~~~~~~~~~~~~lell~aAc~ 117 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACI 117 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHc
Confidence 6788888888887776543
No 308
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.92 E-value=5.7e+02 Score=31.94 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhcCCChHHHHHHHHHH---HHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002996 77 KITEYLCDPLQRCLKDDDPYVRKTAAICV---AKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 77 e~~~~l~~~v~~~l~d~~~~VRk~A~~~l---~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~ 151 (860)
+|+..+....+..|+|.+-.+|=+|.-++ .-+...+++.+-. ....+-+...+.++||.++.-|+..++.++...
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q ss_pred CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHH
Q 002996 152 SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVL 216 (860)
Q Consensus 152 ~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~ 216 (860)
++ =...|.++ +.=||+...+.+...+-....-..-...+..=...+++.-+-|.+
T Consensus 879 gD-------Fv~sR~l~---dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~ 933 (1014)
T KOG4524|consen 879 GD-------FVASRFLE---DVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPY 933 (1014)
T ss_pred hh-------HHHHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCccee
No 309
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=22.60 E-value=1.4e+03 Score=27.43 Aligned_cols=160 Identities=11% Similarity=0.165 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHH
Q 002996 308 DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAER-----CISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 382 (860)
Q Consensus 308 ~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~-----~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~ 382 (860)
..+.+-|..-+.+.+.-+...+.-+|+.+..+|.+-.+. .++++..++......+.+....++++++-+..+...
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 344555555555545555556667888888888764443 478888888887777777777888888765444321
Q ss_pred -----HH-HHHHHHhhccCCchHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCCh
Q 002996 383 -----SI-IATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGP 456 (860)
Q Consensus 383 -----~~-i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~ 456 (860)
++ ...+.+++++ .++.+.+-+.-++..+. .+..+.++.+++.|.++-..+-.++ |++.+.|-- .
T Consensus 498 ~~~~~ki~a~~i~~l~nd-~d~~Vqeq~fqllRNl~---c~~~~svdfll~~~~~~ld~i~l~l-----k~a~~~pi~-i 567 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLIND-PDWAVQEQCFQLLRNLT---CNSRKSVDFLLEKFKDVLDKIDLQL-----KIAIGSPIL-I 567 (678)
T ss_pred HHHHHHhhHHHHHHHHhC-CCHHHHHHHHHHHHHhh---cCcHHHHHHHHHhhhHHHHHHHHHH-----hhccCCcee-h
Confidence 11 1122233333 45666676777776543 3456677777777765544333332 888887742 3
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHH
Q 002996 457 QQMIQVVLNNATVETDNPDLRDRAYI 482 (860)
Q Consensus 457 ~~~i~~~l~~~~~~s~~~evrdRA~~ 482 (860)
+.+...+.-.. =.|.++|+.+
T Consensus 568 e~~~~~~~l~~-----~~d~~~~~am 588 (678)
T KOG1293|consen 568 EFLAKKMRLLN-----PLDTQQKKAM 588 (678)
T ss_pred hhHHHHHHhcc-----chhHHHHHHH
Confidence 33333332221 1367777654
No 310
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=22.43 E-value=1.4e+03 Score=27.54 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=99.5
Q ss_pred chHHHhHh---ccCCCcchHHHHHHHHHHhcCCCCcH--HHHHHHHHHhhcCCCC--HHHHhHHHHHhcCCChhhhHHHH
Q 002996 10 LFTDVVNC---MQTENLELKKLVYLYLINYAKSQPDL--AILAVNTFVKDSQDPN--PLIRALAVRTMGCIRVDKITEYL 82 (860)
Q Consensus 10 ~f~~vi~l---~~s~~~~~Krl~Yl~l~~~~~~~~el--~~L~in~l~kDl~~~n--~~ir~lALr~l~~i~~~e~~~~l 82 (860)
-|.++... +..++-++|.=-+-.+..-.+.-||. +..+.+.+..++.-.+ ..+....+..--.+..++....+
T Consensus 252 ~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i 331 (690)
T KOG1243|consen 252 DFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRI 331 (690)
T ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccch
Confidence 34444442 45577777777776666655555552 2233344444443322 33333444444445566677788
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHH
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~ 161 (860)
.+.|.+++...+--||=.=+.-+-+.... .++.+.+ ...+.+...+.|+|+.++..++..+..+.+.-..
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d-~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~-------- 402 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILND-QIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK-------- 402 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcc-hhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch--------
Confidence 89999999999988887766666555543 4444443 6778888889999999999988888777543211
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhccc
Q 002996 162 TLSKLLTALNECTEWGQVFILDALSRYKA 190 (860)
Q Consensus 162 ~~~~Ll~~l~~~~~w~q~~il~~L~~~~~ 190 (860)
+ =+...+||.|+++.+
T Consensus 403 ---~----------~Ln~Ellr~~ar~q~ 418 (690)
T KOG1243|consen 403 ---R----------NLNGELLRYLARLQP 418 (690)
T ss_pred ---h----------hhcHHHHHHHHhhCc
Confidence 0 134567778888776
No 311
>PF05536 Neurochondrin: Neurochondrin
Probab=22.01 E-value=1.3e+03 Score=27.13 Aligned_cols=106 Identities=17% Similarity=0.282 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHhCcccHHH-----HHHHHHHhhccCC--chHHHHHHHHHHhhcccccC-
Q 002996 346 RCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYPNTYES-----IIATLCESLDTLD--EPEAKASMIWIIGEYAERID- 416 (860)
Q Consensus 346 ~~v~~ll~ll~~~~~-~v~~e~i~~l~~i~~~~p~~~~~-----~i~~L~~~l~~~~--~~~~~~~~~wilGEy~~~i~- 416 (860)
..|..+++++...++ .+.+++...+..+. .+|+-++. .+..|++.+.+-. ...+.....++++..+...-
T Consensus 98 ~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~~~~~~ 176 (543)
T PF05536_consen 98 SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLGQKSWA 176 (543)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhhhh
Confidence 456667777777776 77777777777776 45554333 3556666654311 22344555566666553221
Q ss_pred C----HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCC
Q 002996 417 N----ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 452 (860)
Q Consensus 417 ~----~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p 452 (860)
+ ...++..+...|.......|..++.-+..++.+.|
T Consensus 177 ~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~ 216 (543)
T PF05536_consen 177 EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSP 216 (543)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCC
Confidence 1 23456667777777777778888888888887774
No 312
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=21.72 E-value=2.7e+02 Score=24.44 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=28.5
Q ss_pred CeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEee
Q 002996 656 GQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPM 709 (860)
Q Consensus 656 ~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i 709 (860)
....-.|+++|.++.++ -|.+..+.+. .+.. .+..+.|.||++.++.|.+
T Consensus 18 ~~~~~~l~l~N~s~~~i-~fKiktt~~~-~y~v--~P~~G~i~p~~~~~i~I~~ 67 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPI-AFKIKTTNPN-RYRV--KPSYGIIEPGESVEITITF 67 (109)
T ss_dssp S-EEEEEEEEE-SSSEE-EEEEEES-TT-TEEE--ESSEEEE-TTEEEEEEEEE
T ss_pred ceEEEEEEEECCCCCcE-EEEEEcCCCc-eEEe--cCCCEEECCCCEEEEEEEE
Confidence 34578889999988753 3555544321 2221 2446689999987666633
No 313
>KOG4712 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.65 E-value=1.2e+03 Score=29.02 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=13.2
Q ss_pred cCcccHHHHHHHHHH
Q 002996 302 ASDRNIDQVLLEFKE 316 (860)
Q Consensus 302 ~~~~Nv~~Iv~eL~~ 316 (860)
+++-||.++..++.+
T Consensus 284 ~t~~NVR~~is~~r~ 298 (1335)
T KOG4712|consen 284 VTAMNVREVISELRE 298 (1335)
T ss_pred CCcccHHHHHHHHHH
Confidence 889999999999973
No 314
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=21.43 E-value=1.8e+03 Score=28.24 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcccc--cC--CHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhcccCCCCh
Q 002996 401 KASMIWIIGEYAER--ID--NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE--GPQQMIQVVLNNATVETDNP 474 (860)
Q Consensus 401 ~~~~~wilGEy~~~--i~--~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~--~~~~~i~~~l~~~~~~s~~~ 474 (860)
+-.++-.|||-+.. ++ ..-..|+.++..|...+.++-+.+|..+.+++.++|+- .++.++..+...+. ....
T Consensus 522 k~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK~--a~~l 599 (1128)
T KOG2051|consen 522 KLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKKR--ASAL 599 (1128)
T ss_pred hhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHHH--Hhhh
Confidence 44567788997653 22 13466888889999889999999999999999999973 13344444443332 3445
Q ss_pred HHHHHHHH
Q 002996 475 DLRDRAYI 482 (860)
Q Consensus 475 evrdRA~~ 482 (860)
|=|+-+..
T Consensus 600 Dsr~~~~i 607 (1128)
T KOG2051|consen 600 DSRQATLI 607 (1128)
T ss_pred chHHHHHH
Confidence 55555443
No 315
>TIGR02756 TraK_Ftype type-F conjugative transfer system secretin TraK. The TraK protein is predicted to interact with the TraV and TraB proteins as part of the scaffold which extends from the inner membrane, through the periplasm to the cell envelope and through which the F-type conjugative pilus passes. TraK is homologous to the P-type IV secretion system protein TrbG, the Ti-type protein VirB9 and the I-type TraN protein. The protein is related to the secretin family especially the HrcC subgroup of the type III secretion system. The protein is hypothesized to oligomerize to form a ring structure akin to other secretins.
Probab=20.94 E-value=1.8e+02 Score=30.08 Aligned_cols=62 Identities=24% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCeEEEEEEEeeCCee-EEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEE
Q 002996 643 QGLQIGAELTRQDGQV-FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLL 707 (860)
Q Consensus 643 ~gl~I~~~~~~~~~~~-~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v 707 (860)
.|+++.....+.|+++ -..+++.|++.++++-=.-+|-.+ |...... .-..|.||+++.+++
T Consensus 168 ~gl~~~~~~~y~G~~l~g~~y~l~N~s~~~~~L~E~~F~~~--gv~AVa~-~~~~L~PGe~t~vyv 230 (232)
T TIGR02756 168 AGLSVRPDAVWTGNHLKGERFELENKTNSPLELTESWFWQP--GTRAVAL-SKPQLAPGETADLYR 230 (232)
T ss_pred CCcEEEEeEEEECCCcEEEEEEEEcCCCCCeEechHHhCCc--CcEEEEe-ccCccCCCCEEEEEE
Confidence 6788888888889887 577899999998866433344322 3222111 224899999988765
No 316
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.88 E-value=5.4e+02 Score=29.99 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhc----------CCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcC--CChhHHHHHHHHH
Q 002996 79 TEYLCDPLQRCLK----------DDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD--NNPMVVANAVAAL 144 (860)
Q Consensus 79 ~~~l~~~v~~~l~----------d~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D--~d~~V~~~al~~l 144 (860)
+..|+|.|.-|+. |.+..+|.-|+.-+.++++..++.... ..++..+.+.+.| +..+..+.|+.-|
T Consensus 286 lh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL 365 (576)
T KOG2549|consen 286 LHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL 365 (576)
T ss_pred HHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Confidence 3444555555543 467778888888888888877766542 1234444555544 4567777777777
Q ss_pred HHHh
Q 002996 145 AEIE 148 (860)
Q Consensus 145 ~~i~ 148 (860)
.++.
T Consensus 366 ~~lg 369 (576)
T KOG2549|consen 366 SELG 369 (576)
T ss_pred HHhh
Confidence 6664
No 317
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=20.78 E-value=1.7e+02 Score=28.90 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=7.0
Q ss_pred ChHHHHHHHHHHHH
Q 002996 94 DPYVRKTAAICVAK 107 (860)
Q Consensus 94 ~~~VRk~A~~~l~k 107 (860)
+|.||.-|+-++-+
T Consensus 84 ~~~Vr~yAvr~L~~ 97 (175)
T cd00871 84 HPLVLQYAVRVLES 97 (175)
T ss_pred CHHHHHHHHHHHHh
Confidence 45555555554443
No 318
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=20.72 E-value=7.2e+02 Score=23.48 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=53.2
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc---CC---CCchh
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN---SS---RPIFE 157 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~---~~---~~~~~ 157 (860)
..+.+.|.-+-..+.|.|..|+-. .+.-+ ++.+.|.+-|.+.+.....+.+.++..+++. .. ..+..
T Consensus 11 ~~~L~~L~aS~qSi~kaa~fAlk~-----~~~~e--dL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~ 83 (139)
T PF12243_consen 11 TQLLRRLNASQQSIQKAAQFALKN-----RDMEE--DLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVS 83 (139)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHc-----cccHH--HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHH
Confidence 344556666667788888887754 33332 4778888888888888888877777666543 22 23444
Q ss_pred ccHHHHHHHHHHhccCChh
Q 002996 158 ITSHTLSKLLTALNECTEW 176 (860)
Q Consensus 158 ~~~~~~~~Ll~~l~~~~~w 176 (860)
.+...+.+++....-.+.|
T Consensus 84 ~l~~dL~~Iv~~V~P~~~~ 102 (139)
T PF12243_consen 84 MLQRDLPRIVDAVAPPDNS 102 (139)
T ss_pred HHHHHHHHHHHHhCCCCCc
Confidence 5555555555554444555
No 319
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=20.68 E-value=2.4e+02 Score=24.34 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=35.2
Q ss_pred EEecCCccEEEEEEeecCCCceEEEEecC-CCchHHHHHHHHHHHHh
Q 002996 814 AKIPPGVPFLIELTTVIGNPGVKCAIKTP-NPDIASLFFEAIETLLK 859 (860)
Q Consensus 814 ~~~~~~~~~Lv~l~~~~~~~~~~ltvrs~-~~~v~~~l~~~i~~~l~ 859 (860)
+|+...-.|++.+++... +.+.+.++|+ ..+....+.+.+...|.
T Consensus 8 aGtleSsD~~V~v~p~~~-~gi~i~l~S~v~~~fg~~i~~vi~~~l~ 53 (87)
T PF06857_consen 8 AGTLESSDLEVTVEPAES-GGIEIELESSVVKQFGDQIRAVIRETLE 53 (87)
T ss_pred EcccccCcEEEEEEeCCC-CcEEEEEEchHHhhhHHHHHHHHHHHHH
Confidence 667777779999998754 6799999999 56688888887776663
No 320
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=20.61 E-value=1.4e+02 Score=27.76 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhcC----CChHHHHHHHHHHHHHHhhc-ccccccccHHHHHHHhhcCCC
Q 002996 80 EYLCDPLQRCLKD----DDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNN 133 (860)
Q Consensus 80 ~~l~~~v~~~l~d----~~~~VRk~A~~~l~kl~~~~-p~~~~~~~~~~~l~~lL~D~d 133 (860)
+.+...+.+.+.. .++.+.++|.-|+....+.- ++.+....+++.+.++|.+.+
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~ 139 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPE 139 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHH
Confidence 3344444444443 23788889988888887743 344444568888888885444
Done!