Query 002996
Match_columns 860
No_of_seqs 339 out of 1512
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 09:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 1E-85 3.5E-90 780.9 51.1 542 1-543 41-586 (591)
2 2vgl_A Adaptor protein complex 100.0 7.4E-82 2.5E-86 747.5 36.7 509 1-521 66-617 (621)
3 1w63_A Adapter-related protein 100.0 2.8E-75 9.7E-80 693.6 35.3 501 1-517 62-604 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 4.4E-49 1.5E-53 426.8 12.9 289 1-305 55-355 (355)
5 2g30_A AP-2 complex subunit be 100.0 1.5E-36 5E-41 312.9 28.9 230 629-860 28-258 (258)
6 3hs8_A Adaptor protein complex 100.0 3.9E-29 1.3E-33 259.7 19.2 231 620-858 33-273 (273)
7 1kyf_A Alpha-adaptin C; protei 100.0 7.7E-28 2.6E-32 248.3 20.8 230 621-858 8-247 (247)
8 1b3u_A Protein (protein phosph 99.7 7.3E-15 2.5E-19 173.1 33.6 477 8-488 86-586 (588)
9 1b3u_A Protein (protein phosph 99.6 8.6E-14 2.9E-18 163.9 28.5 429 12-447 129-585 (588)
10 1r4x_A Gamma1-COP, coatomer ga 99.6 2.5E-15 8.7E-20 154.0 13.2 216 635-854 39-274 (275)
11 1pzd_A Coatomer gamma subunit; 99.6 4.4E-15 1.5E-19 156.8 13.2 216 635-854 86-321 (322)
12 4fdd_A Transportin-1; heat rep 99.5 3.3E-12 1.1E-16 157.7 34.2 266 198-466 174-491 (852)
13 4fdd_A Transportin-1; heat rep 99.5 3.4E-12 1.2E-16 157.6 33.0 478 9-492 215-788 (852)
14 2vgl_B AP-2 complex subunit be 99.5 1.5E-13 5.1E-18 162.2 19.2 423 49-489 16-455 (591)
15 1w63_A Adapter-related protein 99.5 8.2E-13 2.8E-17 156.5 24.1 404 48-466 36-467 (618)
16 1u6g_C TIP120 protein, CAND1; 99.4 4.4E-11 1.5E-15 153.6 33.3 475 8-487 5-596 (1230)
17 2jdq_A Importin alpha-1 subuni 99.4 6.3E-11 2.1E-15 134.5 29.6 327 11-339 22-391 (450)
18 1wa5_B Importin alpha subunit; 99.4 4.5E-11 1.5E-15 139.2 29.0 338 7-375 85-457 (530)
19 2bpt_A Importin beta-1 subunit 99.4 1.4E-09 4.6E-14 134.2 42.5 478 8-487 133-709 (861)
20 4b8j_A Importin subunit alpha- 99.4 1.1E-10 3.7E-15 135.9 30.7 337 9-376 74-444 (528)
21 2jdq_A Importin alpha-1 subuni 99.4 1.2E-11 4.2E-16 140.4 22.1 293 46-339 20-348 (450)
22 2bpt_A Importin beta-1 subunit 99.4 1.4E-09 4.7E-14 134.1 41.6 436 11-454 6-534 (861)
23 2z6g_A B-catenin; FULL-length, 99.4 6.5E-11 2.2E-15 144.0 26.5 438 48-492 117-625 (780)
24 2z6g_A B-catenin; FULL-length, 99.3 2.2E-10 7.7E-15 139.3 30.3 467 11-488 117-662 (780)
25 1wa5_B Importin alpha subunit; 99.3 2E-10 7E-15 133.6 28.2 332 81-413 87-457 (530)
26 1qgr_A Protein (importin beta 99.3 3.2E-09 1.1E-13 131.1 39.2 444 7-453 126-726 (876)
27 1jdh_A Beta-catenin; beta-cate 99.3 7.8E-10 2.7E-14 128.3 31.7 435 41-485 12-526 (529)
28 1u6g_C TIP120 protein, CAND1; 99.3 7.3E-10 2.5E-14 142.2 32.4 440 9-453 48-602 (1230)
29 2z6h_A Catenin beta-1, beta-ca 99.3 1.5E-09 5E-14 129.6 32.5 438 43-489 11-527 (644)
30 1qgr_A Protein (importin beta 99.3 1.6E-09 5.4E-14 133.9 33.7 469 15-487 223-869 (876)
31 3now_A UNC-45 protein, SD10334 99.2 2.1E-09 7.2E-14 128.3 29.8 368 9-378 290-740 (810)
32 4b8j_A Importin subunit alpha- 99.2 2.4E-09 8.1E-14 124.5 29.6 328 83-412 76-442 (528)
33 1ibr_B P95, importin beta-1 su 99.2 6.3E-10 2.1E-14 126.5 22.4 246 49-304 4-289 (462)
34 3ul1_B Importin subunit alpha- 99.2 6.1E-08 2.1E-12 112.1 37.5 337 9-375 57-430 (510)
35 1oyz_A Hypothetical protein YI 99.2 4.9E-10 1.7E-14 118.9 17.4 238 47-357 24-263 (280)
36 1jdh_A Beta-catenin; beta-cate 99.1 7.9E-09 2.7E-13 119.8 27.2 432 10-447 18-528 (529)
37 3now_A UNC-45 protein, SD10334 99.1 5.9E-08 2E-12 115.9 33.6 399 11-413 248-737 (810)
38 3tpo_A Importin subunit alpha- 99.1 1.6E-07 5.3E-12 109.2 35.2 337 8-374 75-448 (529)
39 2z6h_A Catenin beta-1, beta-ca 99.1 4.5E-08 1.6E-12 116.6 31.2 410 75-491 8-488 (644)
40 2vgl_A Adaptor protein complex 99.1 2E-07 6.8E-12 110.0 35.6 366 25-411 59-472 (621)
41 3ul1_B Importin subunit alpha- 99.0 6.4E-08 2.2E-12 111.9 28.5 256 83-338 59-345 (510)
42 3tpo_A Importin subunit alpha- 99.0 1.9E-07 6.5E-12 108.4 29.9 221 82-302 77-321 (529)
43 1oyz_A Hypothetical protein YI 99.0 5E-08 1.7E-12 103.2 22.0 186 11-218 25-212 (280)
44 1ibr_B P95, importin beta-1 su 98.9 8.6E-08 2.9E-12 108.7 24.2 394 11-428 3-459 (462)
45 3ltm_A Alpha-REP4; protein eng 98.9 3E-08 1E-12 100.2 18.1 186 47-270 20-206 (211)
46 3ltj_A Alpharep-4; protein eng 98.9 7.2E-08 2.5E-12 96.5 18.7 183 46-266 14-197 (201)
47 4hxt_A De novo protein OR329; 98.8 3E-07 1E-11 95.0 21.1 223 48-271 4-245 (252)
48 3ltj_A Alpharep-4; protein eng 98.7 3.9E-07 1.3E-11 91.1 18.1 177 8-218 13-189 (201)
49 3ltm_A Alpha-REP4; protein eng 98.7 4.7E-07 1.6E-11 91.2 18.7 177 8-218 18-194 (211)
50 3tjz_B Coatomer subunit gamma; 98.7 6.4E-07 2.2E-11 96.9 19.4 275 80-368 67-346 (355)
51 4db8_A Armadillo-repeat protei 98.7 2.9E-07 1E-11 95.4 15.5 213 6-218 9-242 (252)
52 4hxt_A De novo protein OR329; 98.6 1.3E-06 4.4E-11 90.1 19.3 209 10-218 3-232 (252)
53 4db8_A Armadillo-repeat protei 98.6 6E-07 2.1E-11 93.0 14.6 218 48-266 14-250 (252)
54 4db6_A Armadillo repeat protei 98.6 8E-07 2.7E-11 89.3 15.1 185 4-188 7-207 (210)
55 3b2a_A TON_1937, putative unch 98.4 1.5E-06 5.1E-11 85.7 12.9 191 121-318 34-233 (265)
56 2qk2_A LP04448P; mini spindles 98.4 6E-06 2E-10 85.2 18.5 196 79-277 13-216 (242)
57 1wa5_C Importin alpha RE-expor 98.4 0.00059 2E-08 84.9 39.5 407 13-449 9-525 (960)
58 1xm9_A Plakophilin 1; armadill 98.3 4.1E-05 1.4E-09 86.9 23.8 125 83-207 4-136 (457)
59 4db6_A Armadillo repeat protei 98.3 1.5E-05 5.3E-10 79.8 15.9 186 80-266 11-208 (210)
60 2qk1_A Protein STU2; STU2P, XM 98.2 1.5E-05 5.3E-10 82.5 15.6 207 85-298 20-245 (249)
61 2db0_A 253AA long hypothetical 98.2 0.00013 4.5E-09 68.9 19.4 208 120-338 32-246 (253)
62 2x19_B Importin-13; nuclear tr 98.2 0.00082 2.8E-08 83.6 33.3 457 13-482 28-592 (963)
63 1te4_A Conserved protein MTH18 98.2 1.1E-06 3.9E-11 81.4 5.3 115 49-186 15-129 (131)
64 3l6x_A Catenin delta-1; cateni 98.2 0.00022 7.6E-09 82.3 24.9 333 47-414 49-477 (584)
65 4ady_A RPN2, 26S proteasome re 98.2 0.00078 2.7E-08 80.8 30.1 264 48-339 394-677 (963)
66 1te4_A Conserved protein MTH18 98.2 9.1E-07 3.1E-11 82.0 3.9 118 10-146 13-130 (131)
67 3l6x_A Catenin delta-1; cateni 98.1 0.00044 1.5E-08 79.8 26.3 358 82-449 49-476 (584)
68 2qk2_A LP04448P; mini spindles 98.1 3.3E-05 1.1E-09 79.6 15.4 166 5-175 10-190 (242)
69 1xm9_A Plakophilin 1; armadill 98.1 0.00015 5.1E-09 82.2 21.5 349 48-414 4-450 (457)
70 3opb_A SWI5-dependent HO expre 98.0 0.00038 1.3E-08 81.9 22.7 92 59-151 307-408 (778)
71 3nmz_A APC variant protein; pr 98.0 0.00054 1.8E-08 77.1 22.6 330 48-381 34-456 (458)
72 2x1g_F Cadmus; transport prote 97.9 0.00082 2.8E-08 83.8 24.0 427 13-452 11-575 (971)
73 2qk1_A Protein STU2; STU2P, XM 97.8 0.00013 4.4E-09 75.4 13.2 137 16-152 23-178 (249)
74 3opb_A SWI5-dependent HO expre 97.8 0.0091 3.1E-07 70.3 29.5 455 21-488 145-727 (778)
75 1wa5_C Importin alpha RE-expor 97.8 0.0075 2.6E-07 74.9 29.9 243 23-269 375-672 (960)
76 1xqr_A HSPBP1 protein; armadil 97.7 0.00046 1.6E-08 73.1 15.3 141 10-150 82-239 (296)
77 1xqr_A HSPBP1 protein; armadil 97.7 0.0003 1E-08 74.6 13.4 185 5-190 24-238 (296)
78 2x19_B Importin-13; nuclear tr 97.7 0.2 7E-06 61.9 41.1 129 56-189 459-598 (963)
79 3nmw_A APC variant protein; AR 97.6 0.0013 4.4E-08 71.6 17.8 215 58-273 96-340 (354)
80 2db0_A 253AA long hypothetical 97.6 0.0072 2.5E-07 57.3 19.7 193 288-485 46-242 (253)
81 3m1i_C Exportin-1; heat repeat 97.5 0.01 3.5E-07 74.4 26.3 129 12-147 19-164 (1049)
82 3nmz_A APC variant protein; pr 97.5 0.0022 7.5E-08 72.1 17.7 213 58-271 212-454 (458)
83 3ibv_A Exportin-T; karyopherin 97.4 0.25 8.5E-06 61.0 36.5 424 20-453 19-570 (980)
84 3b2a_A TON_1937, putative unch 97.4 0.021 7.1E-07 56.6 21.0 215 241-488 35-260 (265)
85 2x1g_F Cadmus; transport prote 97.4 0.042 1.4E-06 68.2 29.4 196 289-488 436-662 (971)
86 4ady_A RPN2, 26S proteasome re 97.4 0.025 8.6E-07 68.0 25.6 286 7-320 390-699 (963)
87 3a6p_A Exportin-5; exportin-5, 97.0 0.63 2.1E-05 58.9 34.8 139 5-149 4-162 (1204)
88 4ffb_C Protein STU2; tubulin f 97.0 0.014 4.9E-07 60.9 16.7 182 86-268 14-213 (278)
89 3m1i_C Exportin-1; heat repeat 97.0 0.77 2.6E-05 57.3 35.2 159 294-453 436-622 (1049)
90 3nmw_A APC variant protein; AR 97.0 0.014 4.8E-07 63.3 16.4 197 22-218 97-325 (354)
91 4hat_C Exportin-1; heat repeat 96.7 2 6.7E-05 53.2 34.9 107 42-150 447-570 (1023)
92 3u0r_A Apoptosis inhibitor 5; 96.7 1 3.5E-05 49.5 27.9 134 11-150 31-164 (507)
93 4ffb_C Protein STU2; tubulin f 96.6 0.011 3.8E-07 61.8 12.0 147 1-150 1-169 (278)
94 3ibv_A Exportin-T; karyopherin 96.6 1.3 4.6E-05 54.5 31.9 414 58-487 20-564 (980)
95 3grl_A General vesicular trans 96.5 0.18 6.2E-06 57.8 21.6 253 17-271 30-346 (651)
96 3grl_A General vesicular trans 96.5 1.3 4.3E-05 51.0 28.1 182 87-270 28-244 (651)
97 3mnm_A ADP-ribosylation factor 96.4 0.03 1E-06 50.4 11.4 87 643-730 17-107 (123)
98 1ho8_A Vacuolar ATP synthase s 96.2 1.9 6.4E-05 47.7 27.0 125 321-449 333-476 (480)
99 1iu1_A Gamma1-adaptin; coated 96.1 0.039 1.3E-06 51.3 11.0 85 643-731 37-127 (146)
100 3gs3_A Symplekin, LD45768P; he 96.1 0.72 2.5E-05 47.0 21.4 84 62-147 31-117 (257)
101 3zy7_A AP-1 complex subunit ga 96.0 0.036 1.2E-06 49.9 10.1 84 643-730 13-102 (122)
102 2e9g_A AP-1 complex subunit ga 95.6 0.069 2.4E-06 48.6 10.4 85 643-731 22-112 (131)
103 3u0r_A Apoptosis inhibitor 5; 95.6 1.2 4.2E-05 48.9 21.5 145 250-397 40-191 (507)
104 3o2t_A Symplekin; heat repeat, 95.2 0.9 3.1E-05 49.1 19.0 84 62-147 41-127 (386)
105 4hat_C Exportin-1; heat repeat 95.2 9 0.00031 47.3 34.2 161 293-454 435-623 (1023)
106 1gyu_A Adapter-related protein 95.0 0.15 5.1E-06 46.9 10.5 85 643-731 31-121 (140)
107 2of3_A ZYG-9; multifunctional 95.0 0.39 1.3E-05 49.3 14.8 182 79-273 44-242 (266)
108 3l9t_A Putative uncharacterize 94.7 0.7 2.4E-05 46.1 15.2 139 51-200 76-217 (240)
109 2iw3_A Elongation factor 3A; a 94.5 1.8 6.3E-05 52.6 21.3 217 47-268 96-325 (986)
110 3gjx_A Exportin-1; transport, 94.5 1.3 4.3E-05 54.9 20.2 142 45-189 476-643 (1073)
111 1p4u_A ADP-ribosylation factor 94.1 0.25 8.6E-06 46.1 9.9 85 643-731 35-131 (153)
112 2of3_A ZYG-9; multifunctional 93.8 0.82 2.8E-05 46.8 14.0 65 384-452 168-239 (266)
113 3tt9_A Plakophilin-2; cell adh 93.7 0.27 9.1E-06 49.6 9.9 105 46-150 8-125 (233)
114 3gjx_A Exportin-1; transport, 93.2 21 0.00073 44.0 30.7 69 82-152 207-278 (1073)
115 3a6p_A Exportin-5; exportin-5, 92.7 28 0.00094 43.9 35.8 124 59-188 26-160 (1204)
116 1lsh_A Lipovitellin (LV-1N, LV 92.3 0.26 9.1E-06 61.3 9.3 121 22-147 408-541 (1056)
117 3tt9_A Plakophilin-2; cell adh 91.1 2.3 7.9E-05 42.7 13.0 74 121-194 9-85 (233)
118 3o2t_A Symplekin; heat repeat, 90.7 3.5 0.00012 44.5 14.7 123 26-148 41-182 (386)
119 3l9t_A Putative uncharacterize 90.7 0.72 2.5E-05 46.0 8.5 140 6-154 68-212 (240)
120 2iw3_A Elongation factor 3A; a 90.1 2.4 8.2E-05 51.6 14.1 142 309-452 54-207 (986)
121 4gmo_A Putative uncharacterize 87.2 1.8 6.2E-05 51.1 10.4 144 51-194 39-218 (684)
122 4gmo_A Putative uncharacterize 86.8 3.2 0.00011 48.9 12.2 67 85-152 38-108 (684)
123 3gs3_A Symplekin, LD45768P; he 83.7 5.7 0.00019 40.4 10.6 123 26-148 31-172 (257)
124 3oc3_A Helicase MOT1, MOT1; re 83.1 7.3 0.00025 43.7 11.5 227 17-263 182-432 (800)
125 3dad_A FH1/FH2 domain-containi 82.7 46 0.0016 34.9 17.1 101 88-188 125-229 (339)
126 3oc3_A Helicase MOT1, MOT1; re 80.2 9.5 0.00032 42.8 11.2 133 15-148 269-403 (800)
127 1lrv_A LRV, leucine-rich repea 75.6 3 0.0001 42.1 5.5 64 246-333 177-241 (244)
128 2b6c_A Hypothetical protein EF 75.1 11 0.00039 37.2 9.5 150 15-183 61-213 (220)
129 1lsh_A Lipovitellin (LV-1N, LV 73.9 68 0.0023 39.6 18.1 163 307-487 389-572 (1056)
130 3ldz_A STAM-1, signal transduc 72.9 27 0.00094 31.6 10.7 92 17-108 13-112 (140)
131 1x5b_A Signal transducing adap 72.8 22 0.00076 33.2 10.3 98 11-108 16-123 (163)
132 3dad_A FH1/FH2 domain-containi 72.2 65 0.0022 33.8 14.5 140 13-152 122-289 (339)
133 1lrv_A LRV, leucine-rich repea 71.9 5.3 0.00018 40.3 6.2 91 15-144 128-218 (244)
134 3zyq_A Hepatocyte growth facto 70.6 26 0.00088 34.7 10.9 95 14-108 13-116 (226)
135 3s4w_B Protein FACD2, fanconi 68.0 2.5E+02 0.0084 35.2 24.1 125 198-328 400-539 (1323)
136 1t06_A Hypothetical protein; s 67.8 11 0.00039 37.6 7.6 75 53-129 115-197 (235)
137 1vsy_5 Proteasome activator BL 67.4 7 0.00024 47.9 7.0 101 10-112 761-875 (997)
138 1x5b_A Signal transducing adap 64.4 28 0.00097 32.5 9.1 67 85-154 19-85 (163)
139 3jxy_A Alkylpurine DNA glycosy 64.2 25 0.00085 35.0 9.3 89 84-185 134-222 (232)
140 3s4w_B Protein FACD2, fanconi 62.3 1.7E+02 0.0057 36.7 17.7 112 84-207 160-271 (1323)
141 3g2s_A C-terminal fragment of 62.2 63 0.0021 29.6 10.8 103 11-113 12-129 (149)
142 2b6c_A Hypothetical protein EF 61.8 10 0.00036 37.4 5.9 69 50-118 128-196 (220)
143 3jxy_A Alkylpurine DNA glycosy 61.3 8.8 0.0003 38.3 5.3 63 55-117 140-202 (232)
144 1mhq_A ADP-ribosylation factor 57.4 44 0.0015 30.6 8.9 53 99-154 19-71 (148)
145 3g2s_A C-terminal fragment of 55.3 65 0.0022 29.5 9.7 66 86-154 16-81 (149)
146 1dvp_A HRS, hepatocyte growth 55.2 64 0.0022 31.6 10.4 83 24-106 20-111 (220)
147 1juq_A ADP-ribosylation factor 54.7 50 0.0017 31.1 9.0 65 84-150 16-80 (171)
148 2jak_A Serine/threonine-protei 53.9 1.1E+02 0.0038 32.8 12.5 122 363-485 233-363 (392)
149 1upk_A MO25 protein; transfera 53.2 2.2E+02 0.0075 29.8 17.9 162 198-389 125-296 (341)
150 3fga_B Serine/threonine-protei 52.3 2.5E+02 0.0085 30.2 15.8 121 363-484 188-317 (403)
151 1mhq_A ADP-ribosylation factor 51.8 84 0.0029 28.7 9.8 87 23-109 15-115 (148)
152 3ldz_A STAM-1, signal transduc 50.8 51 0.0017 29.8 8.1 53 99-154 23-75 (140)
153 2npp_B PP2A, B subunit, serine 50.8 2.3E+02 0.0077 31.0 14.6 137 363-500 221-372 (449)
154 1juq_A ADP-ribosylation factor 49.4 56 0.0019 30.7 8.4 97 16-112 20-130 (171)
155 2xzz_A Protein-glutamine gamma 47.0 27 0.00094 29.8 5.3 60 655-716 19-78 (102)
156 1elk_A Target of MYB1; superhe 44.7 1E+02 0.0034 28.5 9.3 68 84-154 19-87 (157)
157 1t06_A Hypothetical protein; s 43.5 71 0.0024 31.7 8.6 70 83-152 110-183 (235)
158 1vsy_4 Proteasome activator BL 40.3 1.4E+02 0.0046 35.6 11.7 73 76-149 334-412 (799)
159 1vsy_5 Proteasome activator BL 38.6 47 0.0016 40.6 7.6 116 33-148 830-965 (997)
160 1elk_A Target of MYB1; superhe 35.1 2.4E+02 0.0083 25.8 10.3 98 11-108 17-128 (157)
161 1upk_A MO25 protein; transfera 32.6 4.5E+02 0.015 27.4 15.3 112 350-465 168-296 (341)
162 4flb_A Regulation of nuclear P 30.2 2.7E+02 0.0091 24.4 9.5 49 327-375 21-69 (132)
163 2r39_A FIXG-related protein; s 30.1 1.2E+02 0.0039 26.4 6.8 67 659-729 34-100 (118)
164 2qc7_A ERP31, ERP28, endoplasm 28.1 1.2E+02 0.0041 30.1 7.4 60 315-375 135-198 (240)
165 3s51_A Protein FACI, fanconi a 26.1 1E+03 0.035 29.6 23.1 226 255-484 268-539 (1308)
166 3tj1_A RNA polymerase I-specif 24.1 7.1E+02 0.024 28.5 13.5 88 305-393 132-221 (649)
167 1h2v_C 80 kDa nuclear CAP bind 22.0 8.3E+02 0.028 28.6 14.1 74 296-370 14-89 (771)
168 3qml_C Protein SLS1, nucleotid 21.6 4.7E+02 0.016 26.9 10.2 25 93-117 82-106 (315)
169 1yew_A Particulate methane mon 21.3 2.1E+02 0.0073 30.0 7.6 26 647-672 255-280 (382)
170 3zyq_A Hepatocyte growth facto 20.8 2.7E+02 0.0092 27.2 8.2 64 86-151 13-76 (226)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=1e-85 Score=780.90 Aligned_cols=542 Identities=74% Similarity=1.169 Sum_probs=507.6
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002996 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~ 80 (860)
|++|+|++++|++++++++++|+++||+||+|++.+++.+||++++++|+|+|||+|+||.+|++||++||+++.+++.+
T Consensus 41 ~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~ 120 (591)
T 2vgl_B 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE 120 (591)
T ss_dssp HHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH
T ss_pred HHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-chhcc
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEIT 159 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~-~~~~~ 159 (860)
++.++|++++.|++|||||+|+.|+.++++.+|+.+++.+|++.+.++|+|+|++|+.+|+.+|.+|++.++.. .+.+.
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 99999999999999999999999999999999999987679999999999999999999999999999887655 57777
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhh-hc-cChHHHHHH
Q 002996 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA-MILQQME-LI-TSTDVVRNL 236 (860)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~-~~-~~~~~~~~~ 236 (860)
+..+.+|++.+.+++||+|++++++|+.|.+.++++...+++.+.++++|.|++|+++| .++..+. .+ .+++..+.+
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~ 280 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 88899999999999999999999999999999988999999999999999999999999 2333332 12 235566666
Q ss_pred HHHhhhHHHhhcCCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 002996 237 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 316 (860)
Q Consensus 237 ~~~~~~~L~~lls~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~ 316 (860)
..++.++|+.++++++|+||++|++|..++..+|+.+.+|++.|+|+.+||.+||++|+++|+.+++++|++.|++||.+
T Consensus 281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~ 360 (591)
T 2vgl_B 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE 360 (591)
T ss_dssp HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH
Confidence 77788888888889999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCC
Q 002996 317 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 396 (860)
Q Consensus 317 y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~ 396 (860)
|+.+.|.+|+++++++|+.||.+|++...||+++|+++++..++++.+++|.+++++++++|+.+++++..|++.++++.
T Consensus 361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~ 440 (591)
T 2vgl_B 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD 440 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred chHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHH
Q 002996 397 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 476 (860)
Q Consensus 397 ~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~ev 476 (860)
+|+++++++|++||||+.+.+++++++.++++|.++++.||+++|+|++|++.++|++ .++.++++|+.+..++.|+||
T Consensus 441 ~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~ev 519 (591)
T 2vgl_B 441 EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDL 519 (591)
T ss_dssp SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHH
T ss_pred CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999976 568999999998777899999
Q ss_pred HHHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCcccCChHHHHHHHHhcCcccccccCCchhhhcccc
Q 002996 477 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVK 543 (860)
Q Consensus 477 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~vy~~~~~~~~~~~~ 543 (860)
||||++||+||+.+++.++++|+++||+++.+++..+++++++++.++||+|++|+||++.|+++.+
T Consensus 520 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~ 586 (591)
T 2vgl_B 520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSH 586 (591)
T ss_dssp HHHHHHHHTTTTTCTTHHHHHHTSCCCCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC----
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcCCCCCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCcc
Confidence 9999999999998888999999999999999888899999999999999999999999999987543
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=7.4e-82 Score=747.47 Aligned_cols=509 Identities=20% Similarity=0.304 Sum_probs=439.9
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002996 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~ 80 (860)
|++|+|++++|++|+++++|+|+++||+||||++.|++.++|+++|+||+|+|||+|+||++||+|||+||+|++++|++
T Consensus 66 ~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~ 145 (621)
T 2vgl_A 66 FLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAE 145 (621)
T ss_dssp HHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh--cCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc
Q 002996 81 YLCDPLQRCL--KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (860)
Q Consensus 81 ~l~~~v~~~l--~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~ 158 (860)
++.++|++++ .|++|||||+|++|++|+|+.+|+.++..+|.+.+.++|+|+|++|+.+|+.++.+|++.++..+..+
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~ 225 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTS 225 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999999 99999999999999999999999999866799999999999999999999999999998876433334
Q ss_pred cHHHHHHHHHHhc--cC-----------ChhHHHHHHHHHHhcccc-CHHHHHHHHHHHhh------------hhcCCCh
Q 002996 159 TSHTLSKLLTALN--EC-----------TEWGQVFILDALSRYKAA-DAREAENIVERVTP------------RLQHANC 212 (860)
Q Consensus 159 ~~~~~~~Ll~~l~--~~-----------~~w~q~~il~~L~~~~~~-~~~~~~~ll~~v~~------------~l~~~n~ 212 (860)
.+..++.|.+.+. ++ +||+|+++|++|+.|.+. +++....+.+.+.. .++|.|+
T Consensus 226 ~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~ 305 (621)
T 2vgl_A 226 VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNA 305 (621)
T ss_dssp HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccch
Confidence 4444554444432 24 799999999999999986 45555544443332 3456676
Q ss_pred --HHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhCh--hhhhccce-EEEecc-
Q 002996 213 --AVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIK-VFFCKY- 284 (860)
Q Consensus 213 --aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p--~~~~~~~~-~~~~l~- 284 (860)
+|+++| .++..+. ..++ +...++..|++|+ ++++|+||++|++|.++++.+| ..++.|.. ++.|+.
T Consensus 306 ~~aVl~ea~~~i~~l~--~~~~----~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~ 379 (621)
T 2vgl_A 306 KNAVLFEAISLIIHHD--SEPN----LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKT 379 (621)
T ss_dssp HHHHHHHHHHHHHHHC--CCHH----HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC--CcHH----HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhcc
Confidence 899999 3444443 2333 3445677889988 5899999999999999999987 67888876 556787
Q ss_pred CCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHH
Q 002996 285 NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ 364 (860)
Q Consensus 285 ~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~ 364 (860)
++|++||++||++|+.|+|++|++.|++||++|+.+.|.+|+++++++||.||+||+++.+||+++++++++.+|+++.+
T Consensus 380 d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ 459 (621)
T 2vgl_A 380 ERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSE 459 (621)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCS
T ss_pred CCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchH-HHHHHHHHHhhcccccCC-----HHHHHHHHHhhCCCCcHHHHH
Q 002996 365 EAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE-AKASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQL 438 (860)
Q Consensus 365 e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~-~~~~~~wilGEy~~~i~~-----~~~~l~~~~~~~~~e~~~v~~ 438 (860)
|+|.++++++.++|+.+++++.+|++.+++..... ...+++|++||||+.+.+ |.++++.+.++|..+++.||+
T Consensus 460 ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~ 539 (621)
T 2vgl_A 460 EVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRA 539 (621)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHH
Confidence 99999999999999999999999999997654332 345667999999998865 459999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHhccc-CCCChHHHHHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCcccCChHHH
Q 002996 439 QLLTATVKLFLKKPTEGPQQMIQVVLNNATV-ETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLL 517 (860)
Q Consensus 439 ~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~-~s~~~evrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l~ 517 (860)
++|||++|++.++|+ .++.++.+|+.++. ++.|+||||||+|||+|++.+++.++++++++||+|+++. +.++
T Consensus 540 ~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~~----~~ll 613 (621)
T 2vgl_A 540 LLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPERE----SSIL 613 (621)
T ss_dssp HHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC---------
T ss_pred HHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCCcc----hHHH
Confidence 999999999999986 68899999998874 4789999999999999999877788999999999998764 5677
Q ss_pred HHHH
Q 002996 518 DELL 521 (860)
Q Consensus 518 ~~l~ 521 (860)
++|.
T Consensus 614 ~~l~ 617 (621)
T 2vgl_A 614 AKLK 617 (621)
T ss_dssp ----
T ss_pred HHHH
Confidence 7753
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.8e-75 Score=693.60 Aligned_cols=501 Identities=20% Similarity=0.279 Sum_probs=426.8
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002996 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~ 80 (860)
|++|+|++++|++|+++++|+|+++||+||||++.|++.+||+++|+||+|+|||+|+||++|++|||+||+|+.+++++
T Consensus 62 ~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~ 141 (618)
T 1w63_A 62 HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCR 141 (618)
T ss_dssp HHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC--chhc
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP--IFEI 158 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~--~~~~ 158 (860)
++.+.|.+++.|++|||||+|++|++++|+.+|+.++ +|++.+.++|+|+|++|+.+|+.+|.+|+..++.. .+.
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~- 218 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR- 218 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH-
Confidence 9999999999999999999999999999999999987 49999999999999999999999999998765321 122
Q ss_pred cHHHHHHHHHHhc---------------cCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhh------hcCCChHHHHH
Q 002996 159 TSHTLSKLLTALN---------------ECTEWGQVFILDALSRYKAADAREAENIVERVTPR------LQHANCAVVLS 217 (860)
Q Consensus 159 ~~~~~~~Ll~~l~---------------~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~------l~~~n~aVv~~ 217 (860)
+.+..+++.|. ..+||+|++++++|+.|.+.+++....+++.+... ++|.+.+|+++
T Consensus 219 --~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 219 --KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp --TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 22333343333 24899999999999999998876555544444333 24456689999
Q ss_pred HH-HHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccce-EEEeccCCcHHHHHHH
Q 002996 218 AM-ILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEK 294 (860)
Q Consensus 218 a~-~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~ 294 (860)
|+ .+..+ .... .+...++..|++|+ ++++|+||+||++|..+++.+|..+.+|.. +|+|++++|.+||++|
T Consensus 297 a~~~i~~l---~~~~---~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~a 370 (618)
T 1w63_A 297 TVLTIMDI---KSES---GLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRA 370 (618)
T ss_dssp HHHHHHHS---CCCH---HHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHhc---CCCH---HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHH
Confidence 92 33222 2222 22234567888888 579999999999999999999999999875 8899999999999999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002996 295 LEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIF 374 (860)
Q Consensus 295 L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~ 374 (860)
+++|+.|++++|++.|++||++|+.+.|.+|+++++.+||.||.+|+++..||+++++++++..++++.+++|.++++++
T Consensus 371 lelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii 450 (618)
T 1w63_A 371 MELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLI 450 (618)
T ss_dssp HHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcccHHHHHHHHHHhhcc-CCchHHHHHHHHHHhhcccccCC---------------HHHHHHHHHhhCCCCcHHHHH
Q 002996 375 RRYPNTYESIIATLCESLDT-LDEPEAKASMIWIIGEYAERIDN---------------ADELLESFLESFPEEPAQVQL 438 (860)
Q Consensus 375 ~~~p~~~~~~i~~L~~~l~~-~~~~~~~~~~~wilGEy~~~i~~---------------~~~~l~~~~~~~~~e~~~v~~ 438 (860)
+++|+.+++++..|++.+++ +.......+++|++||||+.+.+ ..++++.+++.| .+++.||+
T Consensus 451 ~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~ 529 (618)
T 1w63_A 451 TNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRG 529 (618)
T ss_dssp HHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHH
T ss_pred hcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHH
Confidence 99999999999999999974 43333445689999999987643 345667777777 78999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCcccCChHHH
Q 002996 439 QLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLL 517 (860)
Q Consensus 439 ~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l~ 517 (860)
++|||++|++.++|+ .++.+..+|+.+. ++.|+||||||++||+|++.++ .+++.++++||+|++..+...+++.
T Consensus 530 ~~lta~~Kl~~~~~~--~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll~~~~-~~~~~vl~~~P~~~~~~~~~~~~~~ 604 (618)
T 1w63_A 530 YALTAIMKLSTRFTC--TVNRIKKVVSIYG-SSIDVELQQRAVEYNALFKKYD-HMRSALLERMPVMEKVTTNGPSEIV 604 (618)
T ss_dssp HHHHHHHHHHTTCSS--CHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTT-THHHHHHSCCCCCCC----------
T ss_pred HHHHHHHHHHHhCcc--hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCcH-HHHHHHhhcCCCCCccccCCccccc
Confidence 999999999999996 5889999999876 6789999999999999998755 4678899999999876544444433
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=4.4e-49 Score=426.76 Aligned_cols=289 Identities=16% Similarity=0.252 Sum_probs=201.1
Q ss_pred CCCCCC-----cccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh
Q 002996 1 MTVGKD-----VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV 75 (860)
Q Consensus 1 mt~G~d-----~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~ 75 (860)
|+.|++ ++.+|++|+|+++|+|+++|||||||++.|++..+| ++|+||+|+||++|+||++||+|||+||+|+.
T Consensus 55 ~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~ 133 (355)
T 3tjz_B 55 INQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD 133 (355)
T ss_dssp HHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC
Confidence 567888 789999999999999999999999999999999655 78999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCc
Q 002996 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (860)
Q Consensus 76 ~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~ 155 (860)
++|++++.+++++++.|++|||||+|++|++|++..+||.++ +|++.+.++++|+||+|+++|+.++++|.+.++
T Consensus 134 ~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--- 208 (355)
T 3tjz_B 134 STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--- 208 (355)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence 999999999999999999999999999999999999999997 499999999999999999999999999987652
Q ss_pred hhccHHHHHHHHHHhccC---ChhHHHHHHHHHHhccccC-HHHHHHHHHHHhhhhcCCChHHHHHHH-HHHHhhhccCh
Q 002996 156 FEITSHTLSKLLTALNEC---TEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSAM-ILQQMELITST 230 (860)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~~---~~w~q~~il~~L~~~~~~~-~~~~~~ll~~v~~~l~~~n~aVv~~a~-~~~~l~~~~~~ 230 (860)
..+.+|+..+.++ +||+|+.++|++..|.+.+ +++...+++.+.+.|+|+|++|+|||+ .+..+. +
T Consensus 209 -----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~---~- 279 (355)
T 3tjz_B 209 -----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLP---G- 279 (355)
T ss_dssp -----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred -----HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc---C-
Confidence 3577777777664 7999999999999999988 677889999999999999999999992 222222 1
Q ss_pred HHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccce-EEEeccCCcHHHHHHHHHHHHHhcCcc
Q 002996 231 DVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR 305 (860)
Q Consensus 231 ~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~ 305 (860)
........++.+|..|+ ++++|+||+||++|.++++++|.+++.|.. +..|+.|.+.+|+..|+..|.+.++|.
T Consensus 280 -~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e~ 355 (355)
T 3tjz_B 280 -CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSEG 355 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------------
T ss_pred -CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCCC
Confidence 11223345677888888 689999999999999999999999998865 677888888999999999999998863
No 5
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=100.00 E-value=1.5e-36 Score=312.85 Aligned_cols=230 Identities=35% Similarity=0.582 Sum_probs=215.6
Q ss_pred CCCCccccccCCCCCCeEEEEEEEeeCCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCC-CccCCCCeeeEEE
Q 002996 629 PVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLL 707 (860)
Q Consensus 629 ~~~~~~vl~~~~~~~gl~I~~~~~~~~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~-~~l~pg~~~~~~v 707 (860)
+.+++.+|++.++|+||+|.++|.|+++++.++++++|+++++|++|++|||+|+||+.|..+..+ ++|+||++.++.+
T Consensus 28 ~~~p~~~~l~~~~g~GLeI~g~f~r~~g~i~l~l~~~N~s~~~is~faIQfNkNsFGL~p~~~~~~~~~L~pgqs~~v~l 107 (258)
T 2g30_A 28 YVAPKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSL 107 (258)
T ss_dssp CCCCCEEEECGGGTTTEEEEEEEEEETTEEEEEEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTTCEEEEEE
T ss_pred CCCchhhcccccCCCcEEEEEEEEEeCCEEEEEEEEecCCccceeeeEEEEcccccCcccCccccCCCccCCCCcEEEEE
Confidence 346778999999999999999999999999999999999999999999999999999999988777 5899999999999
Q ss_pred eeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccccccccccCCCCChHHHHHHhccCCCCccceeecCCCccCCHHHH
Q 002996 708 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEAT 787 (860)
Q Consensus 708 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~Pl~~~~~~~~~~~~~~F~~~W~~l~~~~E~~~~~~~~~~~~~~~~ 787 (860)
++.++++.+..+|...||||+|++.+ +|||++++|++.+|.+.++|++++|.+.|+.|++++|.+.++... ..+.+++
T Consensus 108 pl~~~~~~~~~~p~~~LQVAIKtn~~-vfYF~~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~~nE~~~~i~~~-~~~~~~i 185 (258)
T 2g30_A 108 PLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKEC-HLNADTV 185 (258)
T ss_dssp EEESCSCBCCCSSTTEEEEEEECSSC-EEEEEEECCGGGGBCSCCCCCHHHHHHHHHHSCGGGCEEEEETTC-CCCHHHH
T ss_pred eeecCCcccCCCCCchheeeeecCCc-eEEEEeecCHHHhcCCcCccCHHHHHHHHhhCCCccceeEecccC-cCCHHHH
Confidence 99999988877777789999999986 999999999999999999999999999999999999999998866 4777999
Q ss_pred HHHHHhcCceeeeeccCCCCceEEEEEEecCCccEEEEEEeecCCCceEEEEecCCCchHHHHHHHHHHHHhC
Q 002996 788 LDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA 860 (860)
Q Consensus 788 ~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~~Lv~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~l~~ 860 (860)
.++|++.|+|.|+++.++|++++|||++++++.++|+++.++.+++++++++||+++.+++++.+++..+|++
T Consensus 186 ~~kL~~~nif~Va~r~~~~q~~ly~S~kt~n~i~vL~el~~~~~~~~v~l~vks~~~~i~~li~~~~~~~l~~ 258 (258)
T 2g30_A 186 SSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQVYDSILKN 258 (258)
T ss_dssp HHHHHHTTCEEEEEEEETTEEEEEEEEEBTTSCEEEEEEEECSSCSSEEEEEEESSGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHCCeEEEEeecCCCCceEEEEEEccCCcEEEEEEEEccCCCcEEEEEecCCchHHHHHHHHHHHHhhC
Confidence 9999999999999988889999999999999999999999998767899999999999999999999999985
No 6
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=99.96 E-value=3.9e-29 Score=259.73 Aligned_cols=231 Identities=14% Similarity=0.155 Sum_probs=191.7
Q ss_pred ccCCCCCCCCC--CCccccccCCCCCCeEEEEEEEeeCCeeEEEEEEEecCCCCccceeeeeccCc---cCcccCCCCCC
Q 002996 620 VPADQAAASPV--PALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNT---FGLAAGGALQV 694 (860)
Q Consensus 620 ~p~~~~~~~~~--~~~~vl~~~~~~~gl~I~~~~~~~~~~~~l~l~~~N~s~~~lt~f~v~i~~n~---~gl~~~~~~~~ 694 (860)
.|.|..++.++ .+.|+||++ ..|||+++.+++++++++.|+|+||++++|++|++++.++. .++.....+..
T Consensus 33 ~~~~~~~f~rll~~~~GVLyED---~~IQIg~kse~~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~ 109 (273)
T 3hs8_A 33 GSEFEDNFARFVCKNNGVLFEN---QLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVD 109 (273)
T ss_dssp ---CEECGGGGSSCSCEEEEEC---SSEEEEEEEEEETTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCC
T ss_pred CchHHHHHHhheEcCCcEEEeC---CcEEEEEEEEEeCceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCC
Confidence 56798888765 578999998 66999999999999999999999999999999999997542 24544333323
Q ss_pred CccCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEecccc-ccccccCCCCChHHHHHHhccCCC-Cccc
Q 002996 695 PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISL-HVLFTEDGRMERGSFLETWRSLPD-SNEV 772 (860)
Q Consensus 695 ~~l~pg~~~~~~v~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~Pl-~~~~~~~~~~~~~~F~~~W~~l~~-~~E~ 772 (860)
++|+||+++++.+.++|+++|.. +|.+.+.|.|+|... .+++++|+ ...|+++..|+.++|++||++|++ .+|.
T Consensus 110 ~tI~p~~q~qq~i~v~~~~pF~~-~P~l~isf~~~g~~~---~~~LkLPi~~~kf~~p~~~~~~~F~~rWkql~~~~~E~ 185 (273)
T 3hs8_A 110 PTVDGGAQVQQVVNIECISDFTE-APVLNIQFRYGGTFQ---NVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEV 185 (273)
T ss_dssp SCBCTTCEEEEEEEEEECSCCCC-CCEEEEEEEETTEEE---EEEEECCCCGGGGEEECCCCHHHHHHHHHHCCSGGGEE
T ss_pred CeECCCCEEEEEEEEEEcccccC-CCEEEEEEEECCeEE---EEEEecceehhheeccccCCHHHHHHHHHhcCCCCceE
Confidence 69999999999999999999976 457788888876554 77888884 334557889999999999999996 5899
Q ss_pred eeecCCCccCCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec---CCccEEEEEEeecCCCceEEEEecCCCchHHH
Q 002996 773 LKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP---PGVPFLIELTTVIGNPGVKCAIKTPNPDIASL 849 (860)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~---~~~~~Lv~l~~~~~~~~~~ltvrs~~~~v~~~ 849 (860)
+.++......+.+++.+.+.++|+.+|. ++|+++++++.|+.+. ++++||+|++++..++.++|||||+++++++.
T Consensus 186 q~v~~~~~~~~~~~v~~~l~~lg~~vl~-g~Dpn~~n~v~AGi~~t~~g~~gcLvRle~n~~~~~~rlTVRSt~~~vs~~ 264 (273)
T 3hs8_A 186 QNIFKAKHPMDTEITKAKIIGFGSALLE-EVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQR 264 (273)
T ss_dssp EEEEECSSCCCHHHHHHHHHHHTCEECT-TSSSSTTSEEEEEEEECSSCEEEEEEEEEEETTTTEEEEEEEESSHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHhCCeEEeC-CCCCCcccEEEEEEEEeCCCCEEEEEEEEEcccCCEEEEEEEECChhHHHH
Confidence 8888876667889999999999999997 5888887777776665 68999999999976789999999999999999
Q ss_pred HHHHHHHHH
Q 002996 850 FFEAIETLL 858 (860)
Q Consensus 850 l~~~i~~~l 858 (860)
|++++.+.|
T Consensus 265 i~~~i~~~~ 273 (273)
T 3hs8_A 265 LCELLSEQF 273 (273)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhC
Confidence 999998643
No 7
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=99.96 E-value=7.7e-28 Score=248.27 Aligned_cols=230 Identities=14% Similarity=0.167 Sum_probs=188.1
Q ss_pred cCCCCCCCCC--CCccccccCCCCCCeEEEEEEEeeCCeeEEEEEEEecCCCCccceeeeeccCc---cCcccCCCCCCC
Q 002996 621 PADQAAASPV--PALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNT---FGLAAGGALQVP 695 (860)
Q Consensus 621 p~~~~~~~~~--~~~~vl~~~~~~~gl~I~~~~~~~~~~~~l~l~~~N~s~~~lt~f~v~i~~n~---~gl~~~~~~~~~ 695 (860)
++|..++.+. .+.|++|++ ..|||+++.+++++++++.++|+||++++|++|++.+..+. .++.....+..+
T Consensus 8 ~~~~~~f~rl~~~~~GVLyEd---~~iQIg~kse~~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~ 84 (247)
T 1kyf_A 8 GSSEDNFARFVCKNNGVLFEN---QLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDP 84 (247)
T ss_dssp SSSCTTGGGGSSCCCEEEEEC---SSEEEEEEEEEETTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCS
T ss_pred CcHHHHHHHHHhcCceEEEEC---CCEEEEEEEEEeCCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCc
Confidence 3455555543 468999998 66999999999999999999999999999999999997532 134444333345
Q ss_pred ccCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEecccc-ccccccCCCCChHHHHHHhccCCC-Cccce
Q 002996 696 QLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISL-HVLFTEDGRMERGSFLETWRSLPD-SNEVL 773 (860)
Q Consensus 696 ~l~pg~~~~~~v~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~Pl-~~~~~~~~~~~~~~F~~~W~~l~~-~~E~~ 773 (860)
.|+||+++++.+.++|.++|.+.| .+.+.|.+.|... .+++++|+ -..|++|..|+.++|++||+++++ .+|.+
T Consensus 85 ~I~~~~q~qq~i~v~~~~~f~~~P-~l~isf~~~g~~~---~~~LkLPi~l~KF~~p~~~~~~~Ff~rW~~l~~~~~E~q 160 (247)
T 1kyf_A 85 TVDGGAQVQQVVNIECISDFTEAP-VLNIQFRYGGTFQ---NVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQ 160 (247)
T ss_dssp CBCTTCEEEEEEEEEECSCCCCCC-EEEEEEEETTEEE---EEEEECCCCGGGGEEECCCCHHHHHHHHTTCCSGGGEEE
T ss_pred eeCCCcEEEEEEEEEEccccCCCC-EEEEEEEECCeee---EEEEecCcEEEEeecCCcCCHHHHHHHHHhccCCCceeE
Confidence 899999999999999999997754 6677887776544 77888883 334557999999999999999998 48999
Q ss_pred eecCCCccCCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec---CCccEEEEEEeecCCCceEEEEecCCCchHHHH
Q 002996 774 KDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP---PGVPFLIELTTVIGNPGVKCAIKTPNPDIASLF 850 (860)
Q Consensus 774 ~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~---~~~~~Lv~l~~~~~~~~~~ltvrs~~~~v~~~l 850 (860)
..++..++++.+.+...+.++|+.++. ++||++++++.||.+. +++|||+|+|++.+++++||||||+++.++..|
T Consensus 161 ~~f~~~~~~~~~~~~~~l~gf~~~vl~-~vDpn~~niv~agi~~t~~~~~gcLlRlE~n~~~~~~rltvRss~~~vs~~l 239 (247)
T 1kyf_A 161 NIFKAKHPMDTEITKAKIIGFGSALLE-EVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRL 239 (247)
T ss_dssp EEEECSSCCCHHHHHHHHHHHTSEEEC-SSSSSTTSEEEEEEEECSSCEEEEEEEEEEETTTTEEEEEEEESSHHHHHHH
T ss_pred EEeccCCCcCHHHHHHHHhcCCeEEee-CCCCCcCcEEEEEEEEcCCCcEEEEEEEEEcCcCCEEEEEEEECChHHHHHH
Confidence 999888778899999999999987775 7899998866654442 469999999999877789999999999999999
Q ss_pred HHHHHHHH
Q 002996 851 FEAIETLL 858 (860)
Q Consensus 851 ~~~i~~~l 858 (860)
++++.+.|
T Consensus 240 ~~ll~~~~ 247 (247)
T 1kyf_A 240 CELLSEQF 247 (247)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhC
Confidence 99988654
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.70 E-value=7.3e-15 Score=173.09 Aligned_cols=477 Identities=13% Similarity=0.098 Sum_probs=317.0
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHH--HHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhHHHH
Q 002996 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA--ILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKITEYL 82 (860)
Q Consensus 8 s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~--~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~~e~~~~l 82 (860)
..+++.+..++.+++...|+.+--.+..++...++-. -.+...+.+=.+++++.+|..|.+.++.+. ...+.+.+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l 165 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3455555566678888899888888888877665421 123444444446788999999988877653 34566788
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHH
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~ 162 (860)
.+.+.+++.|.++.||+.|+.++.++.+..+.......+++.+..+++|.++.|...|+.++..+....+.. ......
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~ 243 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALV 243 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHH
Confidence 888999999999999999999999998765532211257888899999999999999999998887654321 111122
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcccc-CHH-HHHHHHHHHhhhhcCCChHHHHHH-HHHHHh-hhccChHHHHHHHH
Q 002996 163 LSKLLTALNECTEWGQVFILDALSRYKAA-DAR-EAENIVERVTPRLQHANCAVVLSA-MILQQM-ELITSTDVVRNLCK 238 (860)
Q Consensus 163 ~~~Ll~~l~~~~~w~q~~il~~L~~~~~~-~~~-~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l-~~~~~~~~~~~~~~ 238 (860)
+..+...+.+.++..+....+.|..+... +++ ....++..+...+++.++.|.-.| ..+..+ ..............
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 33333444555544566666666655432 111 124566777777888888877665 222222 21111101112234
Q ss_pred HhhhHHHhhcC-CChhHHHHHHHHHHHHHhhCh-hhhhccce-EE-EeccCCcHHHHHHHHHHHHHhcCcc----cHHHH
Q 002996 239 KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHEIK-VF-FCKYNDPIYVKMEKLEIMIKLASDR----NIDQV 310 (860)
Q Consensus 239 ~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p-~~~~~~~~-~~-~~l~~d~~~Ik~~~L~lL~~l~~~~----Nv~~I 310 (860)
.+.+.+..+++ .++.+|..++.+|..++...+ ..+.+++. .| .++.+++..+|..+++.|..++..- ....+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45666777774 678999999999888875432 11122221 22 2345666899999998877776532 24567
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcc--cHHHHHH
Q 002996 311 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN--TYESIIA 386 (860)
Q Consensus 311 v~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~--~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~--~~~~~i~ 386 (860)
+..|.+.+.+.+..++..++..++.++..+... ....+..++.++......|...++..+..++...++ ....++.
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 888888888888889999999999999876543 245677888888777777888888888888775433 1234555
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccCC---HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002996 387 TLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV 463 (860)
Q Consensus 387 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~---~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~ 463 (860)
.|.+.+.+ .++..+.+++|++|+.+..+.. .+.++..+.+.+.+..+.||..++.++.+++.........+.+...
T Consensus 484 ~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~ 562 (588)
T 1b3u_A 484 KVLAMSGD-PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI 562 (588)
T ss_dssp HHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 55554433 3567788999999998765432 2355666777777888999999999999998765432112334444
Q ss_pred HHhcccCCCChHHHHHHHHHHHHhc
Q 002996 464 LNNATVETDNPDLRDRAYIYWRLLS 488 (860)
Q Consensus 464 l~~~~~~s~~~evrdRA~~y~~ll~ 488 (860)
+.... ++.|.+||+.|..-+.-++
T Consensus 563 l~~l~-~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 563 LEKLT-QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHTT
T ss_pred HHHHc-CCCchhHHHHHHHHHHHhh
Confidence 44433 4679999999998776554
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.61 E-value=8.6e-14 Score=163.92 Aligned_cols=429 Identities=11% Similarity=0.077 Sum_probs=284.6
Q ss_pred HHHhHhccCCCcchHHHHHHHHHHhcCCCCcH-HHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----ChhhhHHHHHHHH
Q 002996 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDL-AILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVDKITEYLCDPL 86 (860)
Q Consensus 12 ~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el-~~L~in~l~kDl~~~n~~ir~lALr~l~~i----~~~e~~~~l~~~v 86 (860)
+-+.++..+++...|..+...+..++..-++. .--+.+.+.+-++|+++.+|..|+++++.+ +.+...+.+.+.+
T Consensus 129 ~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l 208 (588)
T 1b3u_A 129 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 208 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHH
Confidence 33445667778888888777777776654432 223456666777899999999999999987 3445567888899
Q ss_pred HhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHH
Q 002996 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKL 166 (860)
Q Consensus 87 ~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~L 166 (860)
.+++.|.++.||+.|+.++.++....++......+++.+..++.|.++.|..+|+.+|..+...-+... .....+..+
T Consensus 209 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l 286 (588)
T 1b3u_A 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAF 286 (588)
T ss_dssp HHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHH
Confidence 999999999999999999999988765422122477888999999999999999999988876432211 112345666
Q ss_pred HHHhccCChhHHHHHHHHHHhccccCH------HHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHh
Q 002996 167 LTALNECTEWGQVFILDALSRYKAADA------REAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKM 240 (860)
Q Consensus 167 l~~l~~~~~w~q~~il~~L~~~~~~~~------~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~ 240 (860)
++.+.+.++..+......|..+...-. .....++..+...+++.++.|...+ ..++..+...-........+
T Consensus 287 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a--~~~l~~l~~~~~~~~~~~~l 364 (588)
T 1b3u_A 287 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSAL--ASVIMGLSPILGKDNTIEHL 364 (588)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHH--HTTGGGGHHHHCHHHHHHHT
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHhhHhHHHHHH
Confidence 677778788777777766665543211 1234566777777888888887665 22232221100001122345
Q ss_pred hhHHHhhcC-CChhHHHHHHHHHHHHHhhChh-hhhcc-ce-EEEeccCCcHHHHHHHHHHHHHhcCc----ccHHHHHH
Q 002996 241 APPLVTLLS-AEPEIQYVALRNINLIVQRRPT-ILAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLASD----RNIDQVLL 312 (860)
Q Consensus 241 ~~~L~~lls-~~~niry~aL~~l~~l~~~~p~-~~~~~-~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~----~Nv~~Iv~ 312 (860)
.+.+..++. .++++|..++.++..+....+. ...+. +. ...+..+++..+|..+++.|..++.. .....++.
T Consensus 365 ~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 444 (588)
T 1b3u_A 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNS 444 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 666777774 6789999999999988865321 11111 11 11234566688999999998887642 12246888
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHhCc--ccHHHHHH
Q 002996 313 EFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK----IKVNYVVQEAIIVIKDIFRRYP--NTYESIIA 386 (860)
Q Consensus 313 eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~----~~~~~v~~e~i~~l~~i~~~~p--~~~~~~i~ 386 (860)
-+...+.+.+.++|..++.+++.++..+.+ +|+++.++..+. .....+...++..+..+....+ .....++.
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~ 522 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 522 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888889998999999999999999988765 355555555443 3333455556666655554321 12345566
Q ss_pred HHHHhhccCCchHHHHHHHHHHhhcccccCCH---HHHHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 002996 387 TLCESLDTLDEPEAKASMIWIIGEYAERIDNA---DELLESFLESFPEEPAQVQLQLLTATVKL 447 (860)
Q Consensus 387 ~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~~---~~~l~~~~~~~~~e~~~v~~~iLta~~Kl 447 (860)
.|.+.+++ ..++++..++|.+|+++..+... +.++..+..-..+.+..||.....|+.++
T Consensus 523 ~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 523 TVLRMAGD-PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHGGGC-SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHhhCCC-CCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 66666655 46789999999999998766431 23333343434567888888888877665
No 10
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=99.61 E-value=2.5e-15 Score=154.02 Aligned_cols=216 Identities=11% Similarity=0.140 Sum_probs=167.7
Q ss_pred ccccCCCCCCeE-EEEEEEeeCCeeEEEEEEEec-CCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeec
Q 002996 635 VVLPASTGQGLQ-IGAELTRQDGQVFYSMLFENN-TQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLF 712 (860)
Q Consensus 635 vl~~~~~~~gl~-I~~~~~~~~~~~~l~l~~~N~-s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~ 712 (860)
.|.++..++.+. |++.|. +|+.+||.++|+ +++.|+++++++.+. .++......++++|+||+..++++-++.+
T Consensus 39 ~LTE~EtEYvV~~vKHiF~---~hiVlQF~i~NTL~dq~LenVsV~~~~~-d~~~~~~~ipi~~L~~~~~g~~yV~l~~~ 114 (275)
T 1r4x_A 39 ALTESETEYVIRCTKHTFT---NHMVFQFDCTNTLNDQTLENVTVQMEPT-EAYEVLXYVPARSLPYNQPGTCYTLVALP 114 (275)
T ss_dssp ECSCTTSSEEEEEEEEECS---SEEEEEEEEEECCTTEEEEEEEEEEEES-SSCEEEEEECEEEECTTCCEEEEEEEECC
T ss_pred cccCCCCceEEEEEEEecC---CcEEEEEEeEEccCcEEEeeEEEEEEcC-CCceEEEeeeccccCCCCCccEEEEEEcC
Confidence 456667778888 999995 799999999999 999999999999864 34544445678899999999999988876
Q ss_pred C--CCCCC-CCCcceEEEEecCCC-----CeEEEEeccccccccccCC----CCChHHHHHHhccCCCCccceeecCCCc
Q 002996 713 Q--NMSAG-PPSSLLQVAVKNNQQ-----PVWYFNDKISLHVLFTEDG----RMERGSFLETWRSLPDSNEVLKDLPGVV 780 (860)
Q Consensus 713 ~--~~~~~-~~~~~l~~~~~~~~~-----~~~~~~l~~Pl~~~~~~~~----~~~~~~F~~~W~~l~~~~E~~~~~~~~~ 780 (860)
. ..... .+.+.|.|.+|...+ +.-.|.++|++..+....+ ++-..+|...|.+++...|...++....
T Consensus 115 ~~~~~~~~~tf~~~LkF~vke~Dp~tGe~~deGyeDEY~lEdlel~~~D~i~p~~~~nF~~~We~l~~~~E~~~tf~L~~ 194 (275)
T 1r4x_A 115 KEDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVGDEFEKEETFTLST 194 (275)
T ss_dssp SSSTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCCSCHHHHHHHHCSTTCEEEEEEETT
T ss_pred CCccccccceeEEEEEEEEEeccCCCCCcCCCCccceEEccceeechhhEEeecccCchHHHHHhcCCccceEEEEEccC
Confidence 4 22222 456789999986211 1137888888776633111 2446799999999988789999998766
Q ss_pred cCCH-HHHHHHHHhcCceeeeec--cCC--CCceEEEEEEecCCccEEEEEEeecC-CCceEEEEecCCCchHHHHHHHH
Q 002996 781 VSNV-EATLDLLAASNMFFIAKR--KNA--NQDVFYFSAKIPPGVPFLIELTTVIG-NPGVKCAIKTPNPDIASLFFEAI 854 (860)
Q Consensus 781 ~~~~-~~~~~~l~~~~~~~v~~~--~~~--~~~~~~~s~~~~~~~~~Lv~l~~~~~-~~~~~ltvrs~~~~v~~~l~~~i 854 (860)
..+. +++.+.+..+|+.+|.+. +.+ +..+++++|++.||..||+|+++..+ +..++|+|||+++.++.++.+++
T Consensus 195 ~~sl~~AV~~l~~~Lgm~p~e~sd~v~~~~~~HtL~LsG~~~gg~~Vlvr~rl~~~~gv~~kl~vRs~~~~v~~~v~~~v 274 (275)
T 1r4x_A 195 IKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQVTARSLEELPVDIILASV 274 (275)
T ss_dssp CCCHHHHHHHHHHHHTCEECTTTTSCCSSCSEEEEEEEEEETTTEEEEEEEEEEESSSEEEEEEEEESSHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHhcCCccccCCccCCCCCcceEEEEEEEEeCCcEEEEEEEEecCCceEEEEEEEcCCHHHHHHHHHhh
Confidence 5667 688888999999999863 222 34479999999999899999998854 57789999999999999998775
No 11
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=99.59 E-value=4.4e-15 Score=156.78 Aligned_cols=216 Identities=11% Similarity=0.133 Sum_probs=168.9
Q ss_pred ccccCCCCCCeE-EEEEEEeeCCeeEEEEEEEec-CCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeec
Q 002996 635 VVLPASTGQGLQ-IGAELTRQDGQVFYSMLFENN-TQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLF 712 (860)
Q Consensus 635 vl~~~~~~~gl~-I~~~~~~~~~~~~l~l~~~N~-s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~ 712 (860)
.|.+...++.+. |+|.|. +|+.+||.++|+ +++.|+++++++... .++......++++|+||+...+++-++..
T Consensus 86 ~LTE~EtEYvV~~vKHiF~---~hiVlQF~~~NTL~dq~LenV~V~~~~~-~~~~~~~~ip~~~L~~~~~g~~yv~~~~~ 161 (322)
T 1pzd_A 86 ALTESETEYVIRCTKHTFT---DHMVFQFDCTNTLNDQTLENVTVQMEPS-EAYEVLCYVPARSLPYNQPGTCYTLVALP 161 (322)
T ss_dssp ECSCTTSSEEEEEEEEECS---SEEEEEEEEEECCTTEEEEEEEEEEEES-SSCEEEEEECEEEECBTCCEEEEEEEECC
T ss_pred cccCCCceeEEEEEEEecc---CcEEEEEEEEEccCceEEeeEEEEEecC-CCceEEEEEEHhHCCCCCCeeEEEEEEec
Confidence 455667778888 999995 799999999999 999999999999864 34766666788899999999999988876
Q ss_pred C--CCCCC-CCCcceEEEEecCCC-----CeEEEEeccccccccccC----CCCChHHHHHHhccCCCCccceeecCCCc
Q 002996 713 Q--NMSAG-PPSSLLQVAVKNNQQ-----PVWYFNDKISLHVLFTED----GRMERGSFLETWRSLPDSNEVLKDLPGVV 780 (860)
Q Consensus 713 ~--~~~~~-~~~~~l~~~~~~~~~-----~~~~~~l~~Pl~~~~~~~----~~~~~~~F~~~W~~l~~~~E~~~~~~~~~ 780 (860)
. ..... .+.+.|.|.+|...+ +.-.|.++|++..+.... .++-..+|.+.|.+++...|...++....
T Consensus 162 ~~~~~~~~~~f~~~LkF~vke~Dp~TGe~~deGyeDEY~lEdlel~~~D~i~p~~~~nF~~~We~l~~~~E~~~tf~L~~ 241 (322)
T 1pzd_A 162 KEDPTAVACTFSCVMKFTVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFTLST 241 (322)
T ss_dssp SSCTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCCSCHHHHHHHHCSTTCEEEEEEESS
T ss_pred CCCCCccceEEEEEEEEEEEeecCCCCCcCCCCccceEEccceeechhhEeeecccCchHHHHHhcCCccceEEEEEccC
Confidence 4 22222 456789999986211 013788888877663311 12446799999999987789999998766
Q ss_pred cCCH-HHHHHHHHhcCceeeeec--cCC--CCceEEEEEEecCCccEEEEEEeecC-CCceEEEEecCCCchHHHHHHHH
Q 002996 781 VSNV-EATLDLLAASNMFFIAKR--KNA--NQDVFYFSAKIPPGVPFLIELTTVIG-NPGVKCAIKTPNPDIASLFFEAI 854 (860)
Q Consensus 781 ~~~~-~~~~~~l~~~~~~~v~~~--~~~--~~~~~~~s~~~~~~~~~Lv~l~~~~~-~~~~~ltvrs~~~~v~~~l~~~i 854 (860)
..+. +++.+.+..+|+.+|.+. +.+ +..+++++|++.||..||+|+++..+ +..++|+|||+++.++.+|.+++
T Consensus 242 ~~sL~~AV~~l~~~Lgm~p~e~sd~v~~~~~sHtL~LsG~~~gg~~VLvr~rl~~~~gv~~kl~vRS~~~~v~~~v~~~v 321 (322)
T 1pzd_A 242 IKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQVTARSSEELPVDIVLASV 321 (322)
T ss_dssp CCCHHHHHHHHHHHHTCEECTTTTCCCSSCSEEEEEEEEEETTSCEEEEEEEEEESSSEEEEEEEEESSHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHhcCCccccCCCcCCCCCcceEEEEEEEEeCCcEEEEEEEEeeCCceEEEEEEecCCHHHHHHHHHhh
Confidence 5667 688889999999999853 222 34488999999999999999998854 57799999999999999998764
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.54 E-value=3.3e-12 Score=157.69 Aligned_cols=266 Identities=15% Similarity=0.175 Sum_probs=178.1
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHhhhcc--ChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhh
Q 002996 198 NIVERVTPRLQHANCAVVLSAMILQQMELIT--STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILA 274 (860)
Q Consensus 198 ~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~--~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~ 274 (860)
.++..+...+++.++.|..+|+ .++..+. .+.........+.+.|..++ +.++++|..++++|..++..+|..+.
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~--~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAV--ACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHH--HHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHhcCCCHHHHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4555556666777777777761 1222111 11211122233455666666 46889999999999999999999888
Q ss_pred ccceE-----EEeccCCcHHHHHHHHHHHHHhcCcc--------cHHHHHHHHHHhh-----------hh----------
Q 002996 275 HEIKV-----FFCKYNDPIYVKMEKLEIMIKLASDR--------NIDQVLLEFKEYA-----------TE---------- 320 (860)
Q Consensus 275 ~~~~~-----~~~l~~d~~~Ik~~~L~lL~~l~~~~--------Nv~~Iv~eL~~y~-----------~~---------- 320 (860)
+|+.. +.+..+++..+|..+++.+..++... .+..++..|...+ .+
T Consensus 252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 87542 22456777999999999999998753 3445666666665 22
Q ss_pred -ccHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcc----cHHHHHHHHHHhhcc
Q 002996 321 -VDVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN----TYESIIATLCESLDT 394 (860)
Q Consensus 321 -~d~~~~~~~i~~I~~la~k~~~~-~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~----~~~~~i~~L~~~l~~ 394 (860)
.+..+++.+..+++.++..++.. ....+..+.+++......+...++..+..+....++ ....++..++..+.+
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d 411 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD 411 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC
Confidence 11125777889999999877542 345666677777766667788888888777654332 235667777777765
Q ss_pred CCchHHHHHHHHHHhhcccccC------CHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHH
Q 002996 395 LDEPEAKASMIWIIGEYAERID------NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE---GPQQMIQVVLN 465 (860)
Q Consensus 395 ~~~~~~~~~~~wilGEy~~~i~------~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~---~~~~~i~~~l~ 465 (860)
.++.++.+++|.+|+|+.... .-..++..+++.+.+.++.||.....|+..+....+.+ -...++..+++
T Consensus 412 -~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~ 490 (852)
T 4fdd_A 412 -KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 490 (852)
T ss_dssp -SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHH
Confidence 467889999999999987542 24567788887777788999999999999887654332 02344555544
Q ss_pred h
Q 002996 466 N 466 (860)
Q Consensus 466 ~ 466 (860)
.
T Consensus 491 ~ 491 (852)
T 4fdd_A 491 A 491 (852)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.53 E-value=3.4e-12 Score=157.60 Aligned_cols=478 Identities=16% Similarity=0.155 Sum_probs=306.7
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcH----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh--------h
Q 002996 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--------D 76 (860)
Q Consensus 9 ~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el----~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~--------~ 76 (860)
.++..+.+++..++...|+-++-.+..+++..++. .--+++.+.+-++|+++.+|..|+.++..+.. +
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~ 294 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 34555666778889999999999998888776653 12345666677788999999999988887763 2
Q ss_pred hhHHHHHHHHHhhh-----------cC-----------CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCCh
Q 002996 77 KITEYLCDPLQRCL-----------KD-----------DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP 134 (860)
Q Consensus 77 e~~~~l~~~v~~~l-----------~d-----------~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~ 134 (860)
...+.+++.+.+.+ .| .+..||+.|+.++.++....|+.+-. .+++.+.+++.|.++
T Consensus 295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~-~l~~~l~~~l~~~~~ 373 (852)
T 4fdd_A 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP-HILPLLKELLFHHEW 373 (852)
T ss_dssp TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCCCH
Confidence 23446667777766 34 45679999999999999887765432 588899999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccC-----HHHHHHHHHHHhhhhcC
Q 002996 135 MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD-----AREAENIVERVTPRLQH 209 (860)
Q Consensus 135 ~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~-----~~~~~~ll~~v~~~l~~ 209 (860)
.+..+|+.++..|....+...-......+..++..+.+.++-.+......|.++...- ......++..+...++.
T Consensus 374 ~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d 453 (852)
T 4fdd_A 374 VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453 (852)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC
Confidence 9999999999999765322222345667788888888888877777777777766421 12235677777788877
Q ss_pred CChHHHHHH-HHHHHh-hhccChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChhhh------hccc---
Q 002996 210 ANCAVVLSA-MILQQM-ELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTIL------AHEI--- 277 (860)
Q Consensus 210 ~n~aVv~~a-~~~~~l-~~~~~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~------~~~~--- 277 (860)
.++.|.-+| ..+..+ ... ..+ ....+..+.+.|..+++ .+.....++++++..++..-+..+ ..-+
T Consensus 454 ~~~~vr~~a~~aL~~l~~~~-~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l 531 (852)
T 4fdd_A 454 SNKRVQEAACSAFATLEEEA-CTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHH-GGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh-hHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 788877666 222222 111 111 11123344555666663 344555667777777764322111 1101
Q ss_pred -eEEEeccCCcHHHHHHHHHHHHHhcCc--cc----HHHHHHHHH----Hhh-------------hhccHHHHHHHHHHH
Q 002996 278 -KVFFCKYNDPIYVKMEKLEIMIKLASD--RN----IDQVLLEFK----EYA-------------TEVDVDFVRKAVRAI 333 (860)
Q Consensus 278 -~~~~~l~~d~~~Ik~~~L~lL~~l~~~--~N----v~~Iv~eL~----~y~-------------~~~d~~~~~~~i~~I 333 (860)
..+..+.+++..++ ..++.+..++.. .. +..++..+. .++ ...|.+++..++..|
T Consensus 532 ~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l 610 (852)
T 4fdd_A 532 IQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 610 (852)
T ss_dssp HHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred HHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHH
Confidence 11112334455553 566666555442 11 222333222 221 123678999999999
Q ss_pred HHHHHhhhhhHH------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccH----HHHHHHHHHhhccCCchHHHHH
Q 002996 334 GRCAIKLERAAE------RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY----ESIIATLCESLDTLDEPEAKAS 403 (860)
Q Consensus 334 ~~la~k~~~~~~------~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~----~~~i~~L~~~l~~~~~~~~~~~ 403 (860)
+.++..+..... .+++.+++++......+.+++...+.++....++.. ..++..+.+.++ ..++.++..
T Consensus 611 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~-~~~~~v~~~ 689 (852)
T 4fdd_A 611 SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN-PEFISVCNN 689 (852)
T ss_dssp HHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC-TTSHHHHHH
T ss_pred HHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-ccchHHHHH
Confidence 999988765433 457777777776667788899999999987766532 335555666663 246778899
Q ss_pred HHHHHhhcccccCC-----HHHHHHHHHhhCC--CCcHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHhcccCCCC
Q 002996 404 MIWIIGEYAERIDN-----ADELLESFLESFP--EEPAQVQLQLLTATVKLFLKKPTE---GPQQMIQVVLNNATVETDN 473 (860)
Q Consensus 404 ~~wilGEy~~~i~~-----~~~~l~~~~~~~~--~e~~~v~~~iLta~~Kl~~~~p~~---~~~~~i~~~l~~~~~~s~~ 473 (860)
++|.+|+++..+.. ...++..++..+. ..+..++-.+..++.|+..++|+. .....+...+... .+..|
T Consensus 690 a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l-~~~~d 768 (852)
T 4fdd_A 690 ATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSL-RNIRD 768 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHH-HTSCS
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHh-ccccc
Confidence 99999998765532 3456666665443 335688999999999999998752 1233344444432 23345
Q ss_pred hHHHHHHHHHH-HHhcCCHH
Q 002996 474 PDLRDRAYIYW-RLLSTDPE 492 (860)
Q Consensus 474 ~evrdRA~~y~-~ll~~~~~ 492 (860)
.+.++-|+... .++..+|.
T Consensus 769 ~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 769 NEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp SHHHHHHHHHHHHHHHHCGG
T ss_pred cHHHHHHHHHHHHHHHhChH
Confidence 67777777655 44455554
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.52 E-value=1.5e-13 Score=162.23 Aligned_cols=423 Identities=15% Similarity=0.156 Sum_probs=237.7
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 002996 49 NTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (860)
Q Consensus 49 n~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (860)
+.+++.|+++|...|.-|++-+-.+. ..++ ..+...+.+++.++++.+||.+.+++..+.+.+||.+.- .++.+.
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l--~~n~l~ 92 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIM--AVNSFV 92 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHT--THHHHG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHH--HHHHHH
Confidence 45666666666555544443332211 1122 223344555666666666666666666666666665432 455666
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH--HHHHHHHh
Q 002996 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA--ENIVERVT 204 (860)
Q Consensus 127 ~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~--~~ll~~v~ 204 (860)
+.|.|+|+.+.+.|+.++..+.. -++....+..+.+.+.+.+|..+-+....+.++...+++.. ..+++.+.
T Consensus 93 kdL~~~n~~ir~~AL~~L~~i~~------~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 93 KDCEDPNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR 166 (591)
T ss_dssp GGSSSSSHHHHHHHHHHHHTCCS------GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHH
Confidence 66666666666666666655531 11222334445555566666666555555554433332222 24666677
Q ss_pred hhhcCCChHHHHHH-HHHHHhhhccChHH-HHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccce-EE
Q 002996 205 PRLQHANCAVVLSA-MILQQMELITSTDV-VRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VF 280 (860)
Q Consensus 205 ~~l~~~n~aVv~~a-~~~~~l~~~~~~~~-~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~-~~ 280 (860)
.+|.+.++.|+.+| ..+..+..- +++. .-.+.......|++.+ ..++-.+-..|+.+..+....+.....-+. ..
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~-~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~ 245 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISES-HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVT 245 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTS-CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHT
T ss_pred HHhCCCChhHHHHHHHHHHHHHhh-CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777766 222222111 1100 0000011122333333 345556666666665544333222221122 22
Q ss_pred EeccCCcHHHHHHHHHHHHHhcC-----cccHHHHHHHHHH---hhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002996 281 FCKYNDPIYVKMEKLEIMIKLAS-----DRNIDQVLLEFKE---YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLL 352 (860)
Q Consensus 281 ~~l~~d~~~Ik~~~L~lL~~l~~-----~~Nv~~Iv~eL~~---y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll 352 (860)
.++.+.+..|+..+...+..+.+ ++-+..++..+.. .+.+.|.+++..++++|+.++.+.+.....++..++
T Consensus 246 ~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~ 325 (591)
T 2vgl_B 246 PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF 325 (591)
T ss_dssp TCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS
T ss_pred HHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe
Confidence 34567778899999999998863 3445554444432 444578889999999999988877654333333222
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-CHHHHHHHHHhhCCC
Q 002996 353 ELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPE 431 (860)
Q Consensus 353 ~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-~~~~~l~~~~~~~~~ 431 (860)
.+. ....+|..+++..+..+. +++..+.++..|.+++.+. +++.+..++|-+|..+...+ +...++..+++-+.+
T Consensus 326 ~~~-~d~~~Ir~~al~~L~~l~--~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~ 401 (591)
T 2vgl_B 326 VKY-NDPIYVKLEKLDIMIRLA--SQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT 401 (591)
T ss_dssp CCT-TSCHHHHHHHHHHHHHTC--CSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred ecc-CChHHHHHHHHHHHHHHC--ChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcc
Confidence 111 223566677776666553 3444556788888877653 56778888899998887653 245667777776667
Q ss_pred CcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002996 432 EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 489 (860)
Q Consensus 432 e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~ 489 (860)
....++...+.++..+..++|+. ....+..+.+. ..+..++++|. ...|-+-+.
T Consensus 402 ~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~-l~~~~~~~~~~--~~~wilGey 455 (591)
T 2vgl_B 402 KVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCEN-LDSLDEPDARA--AMIWIVGEY 455 (591)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHT-TTTCCSHHHHH--HHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHH-HHhccCHHHHH--HHHHHHHcc
Confidence 77888888888888888888863 23445555554 33456778754 445655553
No 15
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.51 E-value=8.2e-13 Score=156.55 Aligned_cols=404 Identities=13% Similarity=0.102 Sum_probs=290.7
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (860)
++.|++.+++++...|.-|++-+-.+. ..++ ..+...+.+++.+++..+||-+.+++..+++.+||...- .++.+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~-~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l--~in~l 112 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA-HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL--MTNCI 112 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC-GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH--HHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH--HHHHH
Confidence 466788888877777777766655421 1222 345667778999999999999999999999999986542 67888
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhh
Q 002996 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (860)
Q Consensus 126 ~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~ 205 (860)
.+-|.|+|+.+.+.|+.+|..|... ++....+..+.+.+.+.+|+..-+.+..+.++...+++....+++.+..
T Consensus 113 ~kDL~~~n~~vr~lAL~~L~~i~~~------~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 113 KNDLNHSTQFVQGLALCTLGCMGSS------EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT
T ss_pred HHhcCCCCHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9999999999999999999998632 2334556677777888999998888777777665566555567777788
Q ss_pred hhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhcC----------------CChhHHHHHHHHHHHHHhh
Q 002996 206 RLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLLS----------------AEPEIQYVALRNINLIVQR 268 (860)
Q Consensus 206 ~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls----------------~~~niry~aL~~l~~l~~~ 268 (860)
+|...|++|+.+| .++..+.. .+++. ......+++.|+.+|. .+|-.|-.+++.|..+...
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~-~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCE-RSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCC-SHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred HhCCCCHhHHHHHHHHHHHHHH-hChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 8888999999888 33333321 12322 1223344555555432 3677888899999999887
Q ss_pred ChhhhhccceEE-------EeccCCcHHHHHHHHHHHHHhcCcccH-HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 002996 269 RPTILAHEIKVF-------FCKYNDPIYVKMEKLEIMIKLASDRNI-DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL 340 (860)
Q Consensus 269 ~p~~~~~~~~~~-------~~l~~d~~~Ik~~~L~lL~~l~~~~Nv-~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~ 340 (860)
.|..-......+ ....+....+...+...+..+.+.... ...++-|..++.+.|.+++..++.+|+.++.+.
T Consensus 265 ~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~ 344 (618)
T 1w63_A 265 DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD 344 (618)
T ss_dssp CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC
Confidence 775322211111 122344578999999999998765432 346777888888889999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhccccc-CCHH
Q 002996 341 ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DNAD 419 (860)
Q Consensus 341 ~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i-~~~~ 419 (860)
+.....+.+.++.++...+.++...++..+..+.. ++-.+.++..|.+++.+ .+++.+..++..+|.-+... ++..
T Consensus 345 p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~~~~~~ 421 (618)
T 1w63_A 345 HNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRGMMKELLYFLDS-CEPEFKADCASGIFLAAEKYAPSKR 421 (618)
T ss_dssp HHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCccHH
Confidence 88777888899999999889999999998888864 33345678888888876 35678888888888888765 4556
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 002996 420 ELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 466 (860)
Q Consensus 420 ~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~ 466 (860)
.++..+++-+...+..++..++.++..+..+.|+- ....+..+.+.
T Consensus 422 ~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l-~~~~v~~L~~~ 467 (618)
T 1w63_A 422 WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM-HAYTVQRLYKA 467 (618)
T ss_dssp HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-HHHHHHHHHHH
Confidence 66666665444445566777888888888888863 23355555554
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.43 E-value=4.4e-11 Score=153.59 Aligned_cols=475 Identities=13% Similarity=0.129 Sum_probs=296.8
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCC-----CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhH
Q 002996 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ-----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT 79 (860)
Q Consensus 8 s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~-----~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~~e~~ 79 (860)
++.+..++.-+.+.|-..|+++--.+......+ ++..--++..+.+-|.|+|+.+|..|+++|+.+. .++..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 466788888899999999999977777665432 2333456677888889999999999999988753 34566
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc------c--ccccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhc
Q 002996 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL------V--EDRGFLESLKDLISD-NNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 80 ~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~------~--~~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~ 150 (860)
+.+.+.+.+.+.|.++.||..|+.|+..+....+.. . ....+++.|.+.+.| .++.+...|+.++.++...
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999998765532 0 012477888888885 8899999999999999876
Q ss_pred CCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHH-HHHHHHHHhhhhcCCC-hHH---HHHH--HHHHH
Q 002996 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE-AENIVERVTPRLQHAN-CAV---VLSA--MILQQ 223 (860)
Q Consensus 151 ~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~-~~~ll~~v~~~l~~~n-~aV---v~~a--~~~~~ 223 (860)
.+..........+..|+..+.+.+++.+...++.|..+...-+++ ...++..+...|.+.+ ..+ .+++ .+...
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 554333444667778888888888999999999888776543322 1234444444443221 111 1222 11121
Q ss_pred hhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccce-----EEEecc-------------
Q 002996 224 MELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-----VFFCKY------------- 284 (860)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~-----~~~~l~------------- 284 (860)
.+. ........+.+.+...+ ..++++|-.++..+..++...+..+.+++. .+..+.
T Consensus 245 ~~~-----~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 245 AGH-----RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp SSG-----GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred hHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 111 11111223455666666 467899999999999988876543322210 000000
Q ss_pred -----------------------CC-cHHHHHHHHHHHHHhcCcc--cHH----HHHHHHHHhhhhccHHHHHHHHHHHH
Q 002996 285 -----------------------ND-PIYVKMEKLEIMIKLASDR--NID----QVLLEFKEYATEVDVDFVRKAVRAIG 334 (860)
Q Consensus 285 -----------------------~d-~~~Ik~~~L~lL~~l~~~~--Nv~----~Iv~eL~~y~~~~d~~~~~~~i~~I~ 334 (860)
+| ...+|+.+++.|..++... .+. .++..|..++.+.+.+++..++.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 399 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYL 399 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 01 1357999999998887632 223 34555666667778889999999988
Q ss_pred HHHHhhhh-----------------------hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcc----cHHHHHHH
Q 002996 335 RCAIKLER-----------------------AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN----TYESIIAT 387 (860)
Q Consensus 335 ~la~k~~~-----------------------~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~----~~~~~i~~ 387 (860)
.+...... .....+..+.+.+......+...++..+..++...++ ....++..
T Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~ 479 (1230)
T 1u6g_C 400 SLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPG 479 (1230)
T ss_dssp HHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHH
T ss_pred HHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHH
Confidence 87765421 1123344455556666667777788888888877554 23556677
Q ss_pred HHHhhccCCc-hHHHHHHHHHHhhcccccC-C-----HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCC------C
Q 002996 388 LCESLDTLDE-PEAKASMIWIIGEYAERID-N-----ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT------E 454 (860)
Q Consensus 388 L~~~l~~~~~-~~~~~~~~wilGEy~~~i~-~-----~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~------~ 454 (860)
+.+.+.+-.. +..+..++-.++....... . -..++..++..+.+....|+...+.++..+.....+ .
T Consensus 480 l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 559 (1230)
T 1u6g_C 480 IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSF 559 (1230)
T ss_dssp HHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccccccc
Confidence 7777754321 2343322222222211111 0 123455555566667788877776666665532111 1
Q ss_pred ChH----HHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002996 455 GPQ----QMIQVVLNNATVETDNPDLRDRAYIYWRLL 487 (860)
Q Consensus 455 ~~~----~~i~~~l~~~~~~s~~~evrdRA~~y~~ll 487 (860)
... .++..+++.....+.++++|+.|......+
T Consensus 560 ~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 560 DATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 133 344455554332457899999998776555
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.41 E-value=6.3e-11 Score=134.53 Aligned_cols=327 Identities=17% Similarity=0.109 Sum_probs=226.8
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcC--CCCcHHH-----HHHHHHHhhcCCC-CHHHHhHHHHHhcCCCh--hhhH-
Q 002996 11 FTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAI-----LAVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DKIT- 79 (860)
Q Consensus 11 f~~vi~l~~s~~~~~Krl~Yl~l~~~~~--~~~el~~-----L~in~l~kDl~~~-n~~ir~lALr~l~~i~~--~e~~- 79 (860)
++.+++.+.+++...+..+...+..++. .++.... -++..|.+-|+++ ++.+|..|+++|+++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6778888999999999999988887643 3443222 2466677778887 89999999999998753 3322
Q ss_pred ----HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhcC
Q 002996 80 ----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 80 ----~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~~ 151 (860)
..+++.+.+++.+.++.||..|+.++..+...+++. +-+.+.++.+.++|.+ .++.|..+|+.+|..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 346888999999999999999999999998766542 2223678899999984 78999999999999998764
Q ss_pred -CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHH-----HHHHHHhhhhcCCChHHHHHHHHHHHhh
Q 002996 152 -SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAMILQQME 225 (860)
Q Consensus 152 -~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~-----~ll~~v~~~l~~~n~aVv~~a~~~~~l~ 225 (860)
+..........+..|+..+.+.++..+...+..|..+....++... .++..+...+++.++.|...| ..++.
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a--~~~L~ 259 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPA--LRAVG 259 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHH--HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHH--HHHHH
Confidence 3333444466788888888888898888888888887765443322 245677778888888777666 12232
Q ss_pred hcc--ChHHHHHHHH-HhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChhhhh----cc-ce-EEEeccCCcHHHHHHHH
Q 002996 226 LIT--STDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA----HE-IK-VFFCKYNDPIYVKMEKL 295 (860)
Q Consensus 226 ~~~--~~~~~~~~~~-~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~~----~~-~~-~~~~l~~d~~~Ik~~~L 295 (860)
.+. .++..+.+.. .+.+.|..+++ .++.+|..++.+|..++...+.... .. +. .+..+.+++..+|..+.
T Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 222 2222222221 35667778874 6789999999999998865443211 11 11 22234455677888888
Q ss_pred HHHHHhcCc---ccHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 002996 296 EIMIKLASD---RNIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIK 339 (860)
Q Consensus 296 ~lL~~l~~~---~Nv~~-----Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k 339 (860)
..|..++.. ++++. +++.|.+.+.+.|.+++..++.+|+.++..
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 888777642 33332 455666667767777777777777777654
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.41 E-value=4.5e-11 Score=139.24 Aligned_cols=338 Identities=15% Similarity=0.182 Sum_probs=223.9
Q ss_pred cccchHHHhHhccCCCcchHHHHHHHHHHhcCC--CCcHHH----HHHHHHHhhcCCC-CHHHHhHHHHHhcCCCh--hh
Q 002996 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKS--QPDLAI----LAVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DK 77 (860)
Q Consensus 7 ~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~--~~el~~----L~in~l~kDl~~~-n~~ir~lALr~l~~i~~--~e 77 (860)
....++.++..+.+++...++.+-.++..++.. ++.... -++..|.+-|.++ ++.+|..|+++|+++.. ++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 445678889999999999999998888887654 332211 1456788888887 89999999999999875 33
Q ss_pred hHH-----HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 002996 78 ITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (860)
Q Consensus 78 ~~~-----~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~ 149 (860)
... ..++.+.++|.+.++.||..|+.++..+....|+ .+...+.++.|..+|.+.++.|..+|+.+|..++.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 333 3478888999999999999999999999876543 22234678999999999999999999999999987
Q ss_pred cC-CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHH-----HHHHHHhhhhcCCChHHHHHHHHHHH
Q 002996 150 NS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAMILQQ 223 (860)
Q Consensus 150 ~~-~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~-----~ll~~v~~~l~~~n~aVv~~a~~~~~ 223 (860)
.. +..........+..|+..+.+.++..+...+.+|..+....++... .++..+...|++.++.|...| +.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a--~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA--LRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH--HHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHH--HHH
Confidence 64 3333334455677888888888888898889998888765544333 345567778888888777666 122
Q ss_pred hhhcc--ChHHHHHHH-HHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHH
Q 002996 224 MELIT--STDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMI 299 (860)
Q Consensus 224 l~~~~--~~~~~~~~~-~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~ 299 (860)
+..+. .++....++ ..+.+.|+.+|. .++.+|..++.+|..|+...+.....
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~------------------------ 378 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA------------------------ 378 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH------------------------
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH------------------------
Confidence 32222 222222222 134556677764 56778888888887776543321110
Q ss_pred HhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh--h-HH-----HHHHHHHHHHHhhhhhhHHHHHHHHH
Q 002996 300 KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER--A-AE-----RCISVLLELIKIKVNYVVQEAIIVIK 371 (860)
Q Consensus 300 ~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~--~-~~-----~~v~~ll~ll~~~~~~v~~e~i~~l~ 371 (860)
+.+ ..++..|...+.+.+.+++..++.+|+.++....+ . .. .++..++.++......+...+...+.
T Consensus 379 -~~~----~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~ 453 (530)
T 1wa5_B 379 -VID----ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453 (530)
T ss_dssp -HHH----TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred -HHH----CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 000 12355555666667788888888888888765322 1 11 13445555555444444444444444
Q ss_pred HHHH
Q 002996 372 DIFR 375 (860)
Q Consensus 372 ~i~~ 375 (860)
.++.
T Consensus 454 ~l~~ 457 (530)
T 1wa5_B 454 NILK 457 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 19
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.40 E-value=1.4e-09 Score=134.16 Aligned_cols=478 Identities=12% Similarity=0.141 Sum_probs=288.1
Q ss_pred ccchHHHhHhccCC-CcchHHHHHHHHHHhcCCC-C------cHHHHHHHHHHhhcCCC--CHHHHhHHHHHhcCC---C
Q 002996 8 SSLFTDVVNCMQTE-NLELKKLVYLYLINYAKSQ-P------DLAILAVNTFVKDSQDP--NPLIRALAVRTMGCI---R 74 (860)
Q Consensus 8 s~~f~~vi~l~~s~-~~~~Krl~Yl~l~~~~~~~-~------el~~L~in~l~kDl~~~--n~~ir~lALr~l~~i---~ 74 (860)
..+++.++.++.++ +...|..+...+..+.+.- + ...--+...+.+-+.++ ++.+|..|+++++.+ .
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45677888888887 7777777665555554421 1 12334455666667776 899999999999874 1
Q ss_pred hhhh-----HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc--c-cHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002996 75 VDKI-----TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--R-GFLESLKDLISDNNPMVVANAVAALAE 146 (860)
Q Consensus 75 ~~e~-----~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~--~-~~~~~l~~lL~D~d~~V~~~al~~l~~ 146 (860)
...+ .+++.+.+.+.+.+.++-||+.|+.++.++...+|+.+.. . .+++.+...+.|.+..|...|+.++..
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1111 2567888888999999999999999999999988876642 1 355666677889999999999988887
Q ss_pred HhhcC----------------CCCc-hhccHHHHHHHHHHhccC------ChhHH-HHHHHHHHhccccC-HHHHHHHHH
Q 002996 147 IEENS----------------SRPI-FEITSHTLSKLLTALNEC------TEWGQ-VFILDALSRYKAAD-AREAENIVE 201 (860)
Q Consensus 147 i~~~~----------------~~~~-~~~~~~~~~~Ll~~l~~~------~~w~q-~~il~~L~~~~~~~-~~~~~~ll~ 201 (860)
+.... .... .......+..++..+.+. ++|.. ....++|..+...- ......+++
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~ 372 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLE 372 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHH
Confidence 76542 0011 122344566666666542 34643 23334443322110 122345677
Q ss_pred HHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChh------hh
Q 002996 202 RVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT------IL 273 (860)
Q Consensus 202 ~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~------~~ 273 (860)
.+...+++.+..+..+| ..+..+.....++........+.+.|...+ +.++.+|..++.++..++...+. .+
T Consensus 373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 452 (861)
T 2bpt_A 373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL 452 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 77777878777766655 222222211122444455566677777777 46889999999999988865321 12
Q ss_pred hccce-EEEeccCCcHHHHHHHHHHHHHhcCc----------ccHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHHHhh
Q 002996 274 AHEIK-VFFCKYNDPIYVKMEKLEIMIKLASD----------RNIDQVLLEFKEYATEVD--VDFVRKAVRAIGRCAIKL 340 (860)
Q Consensus 274 ~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~----------~Nv~~Iv~eL~~y~~~~d--~~~~~~~i~~I~~la~k~ 340 (860)
..-+. .+.++.+ +..+|..+...|..++.. .-+..|++.|...+.+.| ..++..++.+++.++...
T Consensus 453 ~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 453 PGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 22122 2223434 477888888877766542 235677888887776433 678889999999999876
Q ss_pred hhhHHH----HHHHHHHHHHhh---------------hhhhHHHHHHHHHHHHHhCcc----cHHHHHHHHHHhhccCCc
Q 002996 341 ERAAER----CISVLLELIKIK---------------VNYVVQEAIIVIKDIFRRYPN----TYESIIATLCESLDTLDE 397 (860)
Q Consensus 341 ~~~~~~----~v~~ll~ll~~~---------------~~~v~~e~i~~l~~i~~~~p~----~~~~~i~~L~~~l~~~~~ 397 (860)
+..... .+..+++.+... ...+...++..+..+++..++ ....++..+.+.+.+...
T Consensus 532 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 611 (861)
T 2bpt_A 532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDS 611 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTG
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCC
Confidence 544333 334455555432 112334455667777765443 234455666666654321
Q ss_pred hHHHHHHHHHHhhccc----ccC-CHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHH----HHHHHHhcc
Q 002996 398 PEAKASMIWIIGEYAE----RID-NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM----IQVVLNNAT 468 (860)
Q Consensus 398 ~~~~~~~~wilGEy~~----~i~-~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~----i~~~l~~~~ 468 (860)
...+..+++.+|.... .+. ..+.++..+.+.+....+.+|...+.++..+.....+. ..+. +..+++...
T Consensus 612 ~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~ 690 (861)
T 2bpt_A 612 AFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQMIS 690 (861)
T ss_dssp GGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG-GHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh-ccchHHHHHHHHHHHhC
Confidence 1344444444444322 111 12445555555555566778888888877777655432 4433 333344332
Q ss_pred cCCCChHHHHHHHHHHHHh
Q 002996 469 VETDNPDLRDRAYIYWRLL 487 (860)
Q Consensus 469 ~~s~~~evrdRA~~y~~ll 487 (860)
..+.+.++|..|...+.-+
T Consensus 691 ~~~~~~~vr~~~~~~l~~l 709 (861)
T 2bpt_A 691 NPNARRELKPAVLSVFGDI 709 (861)
T ss_dssp CTTCCTTHHHHHHHHHHHH
T ss_pred CccccHhhhHHHHHHHHHH
Confidence 2223588999887666433
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.39 E-value=1.1e-10 Score=135.92 Aligned_cols=337 Identities=16% Similarity=0.169 Sum_probs=226.7
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCC--cHHHH----HHHHHHhhcCCCC-HHHHhHHHHHhcCCCh--hhhH
Q 002996 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQP--DLAIL----AVNTFVKDSQDPN-PLIRALAVRTMGCIRV--DKIT 79 (860)
Q Consensus 9 ~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~--el~~L----~in~l~kDl~~~n-~~ir~lALr~l~~i~~--~e~~ 79 (860)
..++.+++.+.+++...+..+-.++..++...+ ....+ ++..|.+-|.+++ +.+|..|+.+|++|.. ++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 347888999999999988888888877754432 22211 3566777788876 9999999999998864 4433
Q ss_pred H-----HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhh-cCCChhHHHHHHHHHHHHhhc
Q 002996 80 E-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 80 ~-----~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL-~D~d~~V~~~al~~l~~i~~~ 150 (860)
. ..++.+.+++.+.++.||..|+.++..+....|+ .+.+.+.++.|..+| .+.++.|..+|+.+|..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2 3678889999999999999999999999876554 233346788888899 678999999999999999887
Q ss_pred CCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-----HHHHHhhhhcCCChHHHHHHHHHHHhh
Q 002996 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAMILQQME 225 (860)
Q Consensus 151 ~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-----ll~~v~~~l~~~n~aVv~~a~~~~~l~ 225 (860)
.+...+......+..|+..+...++..+...+..|..+....+..... ++..+...|++.++.|...| +.++.
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a--~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPA--LRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH--HHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHH--HHHHH
Confidence 554445555667888888888888889999999999887665543333 35577788888888777766 22232
Q ss_pred hcc--ChHHHHHHH-HHhhhHHHhhc-CC-ChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHH
Q 002996 226 LIT--STDVVRNLC-KKMAPPLVTLL-SA-EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 300 (860)
Q Consensus 226 ~~~--~~~~~~~~~-~~~~~~L~~ll-s~-~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~ 300 (860)
.+. .++....+. ..+.+.|+.+| +. ++.+|.-++.+|..|+...+..... +
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~----------------------~-- 367 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQA----------------------V-- 367 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHH----------------------H--
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHH----------------------H--
Confidence 222 222222222 12455677776 45 6788888888888877543321110 0
Q ss_pred hcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh-hhhHH-----HHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002996 301 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL-ERAAE-----RCISVLLELIKIKVNYVVQEAIIVIKDIF 374 (860)
Q Consensus 301 l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~-~~~~~-----~~v~~ll~ll~~~~~~v~~e~i~~l~~i~ 374 (860)
.+. .++..|...+.+.+.+++..++.+|+.++... +.... .++..++++|......+...++..+.+++
T Consensus 368 -~~~----~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 368 -INA----GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp -HHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -HHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 001 23455555666667788888888888877652 21111 23555666666655555555555555555
Q ss_pred Hh
Q 002996 375 RR 376 (860)
Q Consensus 375 ~~ 376 (860)
+.
T Consensus 443 ~~ 444 (528)
T 4b8j_A 443 KV 444 (528)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.39 E-value=1.2e-11 Score=140.43 Aligned_cols=293 Identities=15% Similarity=0.106 Sum_probs=192.5
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCC----Ch---hhhHH--HHHHHHHhhhcCC-ChHHHHHHHHHHHHHHhhcccc
Q 002996 46 LAVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKITE--YLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAEL 115 (860)
Q Consensus 46 L~in~l~kDl~~~n~~ir~lALr~l~~i----~~---~e~~~--~l~~~v~~~l~d~-~~~VRk~A~~~l~kl~~~~p~~ 115 (860)
+++..+.+.++++++.+|-.|+++|.++ .. .++++ .+++.+.+++.+. ++.||..|+.++..+...+++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4567778888899999999999999876 22 23333 5788889999998 9999999999999998765543
Q ss_pred c---ccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc-cHHHHHHHHHHhcc-CChhHHHHHHHHHHhccc
Q 002996 116 V---EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE-CTEWGQVFILDALSRYKA 190 (860)
Q Consensus 116 ~---~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~-~~~w~q~~il~~L~~~~~ 190 (860)
. .+.+.++.+.++|.+.++.|...|+.+|..+....+...-.+ ....+..|+..+.+ .++-.+...+..|..+..
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 2 224689999999999999999999999999986542110001 11346677777774 566677777777776653
Q ss_pred cC-H----HHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHH-HHhhhHHHhhc-CCChhHHHHHHHHH
Q 002996 191 AD-A----REAENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNI 262 (860)
Q Consensus 191 ~~-~----~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~niry~aL~~l 262 (860)
.. + .....++..+...+++.++.+...+ ..+..+... .++....+. ..+.+.|+.++ +.++++|..++++|
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 258 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG-PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV 258 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC-CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence 22 1 1124566777778888888777666 233333111 122222222 23567788888 46889999999999
Q ss_pred HHHHhhChhh----hhcc-ce-EEEeccCCcHHHHHHHHHHHHHhcC--cccHH-----HHHHHHHHhhhhccHHHHHHH
Q 002996 263 NLIVQRRPTI----LAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLAS--DRNID-----QVLLEFKEYATEVDVDFVRKA 329 (860)
Q Consensus 263 ~~l~~~~p~~----~~~~-~~-~~~~l~~d~~~Ik~~~L~lL~~l~~--~~Nv~-----~Iv~eL~~y~~~~d~~~~~~~ 329 (860)
..++...+.. +... +. ....+.+++..+|..++..|..++. +.+.+ .+++.|...+.+.+.+++..+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a 338 (450)
T 2jdq_A 259 GNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338 (450)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 9998765432 1111 11 1223445557777777777777763 23333 244556666666677777777
Q ss_pred HHHHHHHHHh
Q 002996 330 VRAIGRCAIK 339 (860)
Q Consensus 330 i~~I~~la~k 339 (860)
+.+|+.++..
T Consensus 339 ~~~L~~l~~~ 348 (450)
T 2jdq_A 339 AWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 7777777654
No 22
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.39 E-value=1.4e-09 Score=134.09 Aligned_cols=436 Identities=13% Similarity=0.124 Sum_probs=280.5
Q ss_pred hHHHhHhc-cCCCcchHHHHHHHHHHhcCCC-CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--------------
Q 002996 11 FTDVVNCM-QTENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------------- 74 (860)
Q Consensus 11 f~~vi~l~-~s~~~~~Krl~Yl~l~~~~~~~-~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-------------- 74 (860)
+.+++..+ .+.|-..|+-+--++..+.+.+ |+........+.+ .+.++.+|-+|...|-+..
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 34555566 7889999999999998876543 5544334444432 2357899999998888762
Q ss_pred -----hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhc-cc-ccccccHHHHHHHhhcCC-ChhHHHHHHHHHHH
Q 002996 75 -----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN-NPMVVANAVAALAE 146 (860)
Q Consensus 75 -----~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~-p~-~~~~~~~~~~l~~lL~D~-d~~V~~~al~~l~~ 146 (860)
.++..+.+-..+.+++.+.++.||++++.++..+.+.+ |. ..+ ++++.|.+++.+. |+.+...++.++..
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~--~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP--ELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH--HHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccH--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 23344566777788889999999999999999998874 53 333 4778888888887 99999999999999
Q ss_pred HhhcCCCC---chhccHHHHHHHHHHhccC--ChhHHHHHHHHHHhcccc------CHHHHHHHHHHHhhhhcCCChHHH
Q 002996 147 IEENSSRP---IFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAA------DAREAENIVERVTPRLQHANCAVV 215 (860)
Q Consensus 147 i~~~~~~~---~~~~~~~~~~~Ll~~l~~~--~~w~q~~il~~L~~~~~~------~~~~~~~ll~~v~~~l~~~n~aVv 215 (860)
+.+.-+.. .-......+..+...+.+. ++=.+...++.|..+... ...+...+++.+...+++.+..+.
T Consensus 162 l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r 241 (861)
T 2bpt_A 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQ 241 (861)
T ss_dssp HHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHH
Confidence 98753322 1223444556666666665 555677778887764221 111223467777777777777766
Q ss_pred HHH-HHH-HHhhhccChHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHHhhC-----------------hhhhh
Q 002996 216 LSA-MIL-QQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRR-----------------PTILA 274 (860)
Q Consensus 216 ~~a-~~~-~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~-----------------p~~~~ 274 (860)
-.+ ..+ ...... ++.....+. .+.+.+...+ +.++++|..+++.+..++... +..+.
T Consensus 242 ~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 242 AAAFGCLCKIMSKY--YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHHHH--GGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH
Confidence 555 111 111111 111112222 3344444455 467899999999998887642 11111
Q ss_pred cc----ce-EEEecc-------CCcHHHHHHHHHHHHHhcC---cccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 002996 275 HE----IK-VFFCKY-------NDPIYVKMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 339 (860)
Q Consensus 275 ~~----~~-~~~~l~-------~d~~~Ik~~~L~lL~~l~~---~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k 339 (860)
++ +. .+.++. +|+..+|+.+.+.|..++. +.-+..+++.+.+.+.+.+...|..++.++|.++..
T Consensus 320 ~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC
Confidence 11 11 111222 2336899999888877764 345667777777777788888999999999998865
Q ss_pred hh-hhHH----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC------cccHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 002996 340 LE-RAAE----RCISVLLELIKIKVNYVVQEAIIVIKDIFRRY------PNTYESIIATLCESLDTLDEPEAKASMIWII 408 (860)
Q Consensus 340 ~~-~~~~----~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~------p~~~~~~i~~L~~~l~~~~~~~~~~~~~wil 408 (860)
.. .... ..+..+++.+......+...+...+.++.... +.....++..+.+.+.+ .+..+..++|.+
T Consensus 400 ~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~v~~~a~~al 477 (861)
T 2bpt_A 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTI 477 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc--ChHHHHHHHHHH
Confidence 42 2223 34455555555555566666655555554431 34566778888888865 277888889998
Q ss_pred hhcccccC---------CHHHHHHHHHhhCCC--CcHHHHHHHHHHHHHHhhcCCCC
Q 002996 409 GEYAERID---------NADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTE 454 (860)
Q Consensus 409 GEy~~~i~---------~~~~~l~~~~~~~~~--e~~~v~~~iLta~~Kl~~~~p~~ 454 (860)
+.+++... ..+.++..+...+.. .++.||..++.++..+....+.+
T Consensus 478 ~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 88765432 135666666665543 33689999999999998877753
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.36 E-value=6.5e-11 Score=144.02 Aligned_cols=438 Identities=12% Similarity=0.119 Sum_probs=278.0
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc---ccccccHHHH
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLES 124 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~ 124 (860)
+..+.++|.++++.+|..|++.++.+...++....++.+.++|.+.++.||..|+.++..+....+. ++...+.++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 5788999999999999999999987766777788899999999999999999999999999864332 1112357888
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHHhhcCCCCchh-ccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH-----H
Q 002996 125 LKDLIS-DNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-----E 197 (860)
Q Consensus 125 l~~lL~-D~d~~V~~~al~~l~~i~~~~~~~~~~-~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~-----~ 197 (860)
|.++|. +.|+.+..+|+.+|..+..... .... .....+..|+..|...++-.+...+..|..+...++... .
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~-~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~ 275 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA 275 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHc
Confidence 888886 4589999999999998765421 1000 012457788888888888888888888887765432211 1
Q ss_pred HHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHH-HhhhHHHhhcC-C-ChhHHHHHHHHHHHHHhhC---h
Q 002996 198 NIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCK-KMAPPLVTLLS-A-EPEIQYVALRNINLIVQRR---P 270 (860)
Q Consensus 198 ~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~-~~~~~L~~lls-~-~~niry~aL~~l~~l~~~~---p 270 (860)
..+..+...|++.+..+.-.+ ..+..+.. .+++....+.. ..++.|+.++. . ....+..+...|..++... +
T Consensus 276 g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~-~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 354 (780)
T 2z6g_A 276 GGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 354 (780)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence 355677778887776554333 12222221 12333222221 34556778774 3 3456777777777776421 1
Q ss_pred hhhhcc-ce-EEEeccCCcHHHHHHHHHHHHHhcCcc----cHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhH
Q 002996 271 TILAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLASDR----NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA 344 (860)
Q Consensus 271 ~~~~~~-~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~----Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~ 344 (860)
.++... +. .+..+.+.+..+++.++..|..++... ....++..|...+.+.|.+++..++.+++.++...+...
T Consensus 355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~ 434 (780)
T 2z6g_A 355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434 (780)
T ss_dssp HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 222221 12 222345667889999999999997543 356788999999998999999999999999876433222
Q ss_pred -----HHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHhCccc---H-----HHHHHHHHHhhccCCchHHHHHHHHHHh
Q 002996 345 -----ERCISVLLELIKIKVN--YVVQEAIIVIKDIFRRYPNT---Y-----ESIIATLCESLDTLDEPEAKASMIWIIG 409 (860)
Q Consensus 345 -----~~~v~~ll~ll~~~~~--~v~~e~i~~l~~i~~~~p~~---~-----~~~i~~L~~~l~~~~~~~~~~~~~wilG 409 (860)
...+..|+++|...++ .+...++..+.+|...+++. + ..++..|.+.+..-..+..+..++|.||
T Consensus 435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~ 514 (780)
T 2z6g_A 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514 (780)
T ss_dssp HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 2357888999987543 67777777888876555542 1 1236667777765445578888999999
Q ss_pred hcccccC--------CH-HHHHHHHHhh----------------CCC--CcHHHHHHHHHHHHHHhhcCCCCChHH----
Q 002996 410 EYAERID--------NA-DELLESFLES----------------FPE--EPAQVQLQLLTATVKLFLKKPTEGPQQ---- 458 (860)
Q Consensus 410 Ey~~~i~--------~~-~~~l~~~~~~----------------~~~--e~~~v~~~iLta~~Kl~~~~p~~~~~~---- 458 (860)
..+..-. +. +.+++.+-.. +.. .+.+++...+.++.++.. .+. .+.
T Consensus 515 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~~--~~~~l~~ 591 (780)
T 2z6g_A 515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DIH--NRIVIRG 591 (780)
T ss_dssp HHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SHH--HHHHHHH
T ss_pred HHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-Chh--hHHHHHH
Confidence 8764211 11 1222222111 221 236678888888888863 221 121
Q ss_pred --HHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHH
Q 002996 459 --MIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 492 (860)
Q Consensus 459 --~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~~ 492 (860)
.+..+.++. .+.+.++|..|...+.-|..+++
T Consensus 592 ~~~i~~Lv~lL--~~~~~~v~~~a~~aL~~L~~~~~ 625 (780)
T 2z6g_A 592 LNTIPLFVQLL--YSPIENIQRVAAGVLCELAQDKE 625 (780)
T ss_dssp TCCHHHHHHGG--GCSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCcHHHHHHHH--cCCCHHHHHHHHHHHHHHhcCHH
Confidence 234555553 35789999998876655444433
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.34 E-value=2.2e-10 Score=139.27 Aligned_cols=467 Identities=13% Similarity=0.113 Sum_probs=279.6
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----h--HHHHH
Q 002996 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----I--TEYLC 83 (860)
Q Consensus 11 f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e-----~--~~~l~ 83 (860)
.+.+++.+++.+.+.|+-. +.+..+. ...++..=++..|.+-|.++++.+|..|+.+|++|...+ + .+.++
T Consensus 117 i~~lv~~L~~~~~~~r~~a-~~~l~~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAV-VNLINYQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHH-HHHHHhh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 4667777777776555432 2222221 123445556777888888999999999999999886321 1 13566
Q ss_pred HHHHhhhcC-CChHHHHHHHHHHHHHHhhc--ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc-c
Q 002996 84 DPLQRCLKD-DDPYVRKTAAICVAKLYDIN--AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-T 159 (860)
Q Consensus 84 ~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~--p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~-~ 159 (860)
+.+.+.|.+ .++.+|+.|+.++.++.... .+.+.+.+.++.|.++|.+.++.|...|+.+|..++...+...-.+ .
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 777777764 59999999999999976532 1123334788999999999999999999999999987643221111 1
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-----HHHHHhhhhcCCChHHHH-HH-HHHHHhhhccChHH
Q 002996 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVL-SA-MILQQMELITSTDV 232 (860)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-----ll~~v~~~l~~~n~aVv~-~a-~~~~~l~~~~~~~~ 232 (860)
...+..|+..|.+.++-.+...+.+|..+...+++.... .+..+...+++.++..+. .+ .++..+.. ..+.
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~--~~~~ 352 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSSN 352 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT--STTH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--ChHH
Confidence 245677888887765545555556665554433332222 345556667766554433 22 23333322 2222
Q ss_pred HHHHH-HHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChhh--hhccce-EEEeccCCcHHHHHHHHHHHHHhcCcc--
Q 002996 233 VRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI--LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR-- 305 (860)
Q Consensus 233 ~~~~~-~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~--~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~-- 305 (860)
...++ ..+++.|+.++. .++.++.-++..|..++...+.. ...-+. .+..+.+++..+|..+..+|..|+...
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 22222 234567888884 57789999999999998755431 111112 122356778899999999999998753
Q ss_pred cHHH-----HHHHHHHhhhhc-c-HHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHhhhh-hhHHHHHHH
Q 002996 306 NIDQ-----VLLEFKEYATEV-D-VDFVRKAVRAIGRCAIKLERA--------AERCISVLLELIKIKVN-YVVQEAIIV 369 (860)
Q Consensus 306 Nv~~-----Iv~eL~~y~~~~-d-~~~~~~~i~~I~~la~k~~~~--------~~~~v~~ll~ll~~~~~-~v~~e~i~~ 369 (860)
+... .+..|.+.+.+. + .+++..++.+|+.++...+.. ....+..|+++|..... .+..++...
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 3322 456666776653 3 389999999999987543321 12346778888887765 788888888
Q ss_pred HHHHHHhCcccHH-----HHHHHHHHhhccCCchHHHHHHHHHHh----------------------hcccccCCH----
Q 002996 370 IKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWIIG----------------------EYAERIDNA---- 418 (860)
Q Consensus 370 l~~i~~~~p~~~~-----~~i~~L~~~l~~~~~~~~~~~~~wilG----------------------Ey~~~i~~~---- 418 (860)
+.++... ++.+. .++..|++.+.+ .+++.+..++|.++ ..+....+.
T Consensus 513 L~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~ 590 (780)
T 2z6g_A 513 IRNLALC-PANHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR 590 (780)
T ss_dssp HHHHHSS-HHHHHHHHHTTHHHHHHHHHHH-HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHhcC-HHHHHHHHHCCCHHHHHHHHHh-cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 8888653 32222 345666666643 12233333344433 322110000
Q ss_pred -HHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHH------HHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002996 419 -DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLS 488 (860)
Q Consensus 419 -~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~------i~~~l~~~~~~s~~~evrdRA~~y~~ll~ 488 (860)
...+..+++-....++.++...+.++..+... ++ .... +..+.++. ++.|.+||..|..-+.-+.
T Consensus 591 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~--~~~~i~~~g~i~~L~~Ll--~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 591 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KE--AAEAIEAEGATAPLTELL--HSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-HH--HHHHHHHTTCHHHHHHGG--GCSCHHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HH--HHHHHHHCCCHHHHHHHH--cCCCHHHHHHHHHHHHHHH
Confidence 01234455555667899999999998888632 21 2222 33455543 4689999999987665554
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.34 E-value=2e-10 Score=133.64 Aligned_cols=332 Identities=13% Similarity=0.132 Sum_probs=217.1
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhc--cc--ccccccHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhcCCCCc
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN--AE--LVEDRGFLESLKDLISDN-NPMVVANAVAALAEIEENSSRPI 155 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~--p~--~~~~~~~~~~l~~lL~D~-d~~V~~~al~~l~~i~~~~~~~~ 155 (860)
..++.+.+.|.+.++.+|..|+.++.++.... |. .+.+.+.++.|.++|.+. ++.|...|+.+|..+....+...
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34666778888999999999999999998653 31 222347889999999987 89999999999999976432111
Q ss_pred hhc-cHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHH-----HHHHHHhhhhcCCChHHHHHH-HHHHHhhhcc
Q 002996 156 FEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSA-MILQQMELIT 228 (860)
Q Consensus 156 ~~~-~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~-----~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~ 228 (860)
-.+ ....+..|+..|.+.++..+...+..|..+...+++... ..+..+...+++.+..|...| ..+..+..-.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 000 123456677777778899999999999988765543322 245667777887777776665 2333332111
Q ss_pred ChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChhhhh----cc-ce-EEEeccCCcHHHHHHHHHHHHHh
Q 002996 229 STDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA----HE-IK-VFFCKYNDPIYVKMEKLEIMIKL 301 (860)
Q Consensus 229 ~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~~----~~-~~-~~~~l~~d~~~Ik~~~L~lL~~l 301 (860)
.+.........+.+.|+.++. .+++++..++.+|..++...+.... .. +. .+..+.+.+..++..++..|..+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 011112233456778888884 6889999999999999876553221 11 12 23345566788999999999999
Q ss_pred cCcc--cHH-----HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHHHhhhhhhHHHHHHH
Q 002996 302 ASDR--NID-----QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKVNYVVQEAIIV 369 (860)
Q Consensus 302 ~~~~--Nv~-----~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~-----~~v~~ll~ll~~~~~~v~~e~i~~ 369 (860)
+... ... .+++.|...+.+.+..++..++.+|+.++...+.... ..+..|+++|......+..++...
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8543 222 3566777788878888999999999888853322211 245567777776666666777777
Q ss_pred HHHHHHhC-c--ccHHH-----HHHHHHHhhccCCchHHHHHHHHHHhhccc
Q 002996 370 IKDIFRRY-P--NTYES-----IIATLCESLDTLDEPEAKASMIWIIGEYAE 413 (860)
Q Consensus 370 l~~i~~~~-p--~~~~~-----~i~~L~~~l~~~~~~~~~~~~~wilGEy~~ 413 (860)
+.++.... + +...+ ++..|++.+++ .++.++..++|.++.+..
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHH
Confidence 77776642 2 22222 34555555543 356666667777766543
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.32 E-value=3.2e-09 Score=131.13 Aligned_cols=444 Identities=11% Similarity=0.134 Sum_probs=267.6
Q ss_pred cccchHHHhHhccCC--CcchHHHHHHHHHHhcCCC-C----cHHHHHHHHHHhhcCCC--CHHHHhHHHHHhcCCCh--
Q 002996 7 VSSLFTDVVNCMQTE--NLELKKLVYLYLINYAKSQ-P----DLAILAVNTFVKDSQDP--NPLIRALAVRTMGCIRV-- 75 (860)
Q Consensus 7 ~s~~f~~vi~l~~s~--~~~~Krl~Yl~l~~~~~~~-~----el~~L~in~l~kDl~~~--n~~ir~lALr~l~~i~~-- 75 (860)
...+++.++.++.++ +...|+.+...+..+.+.- + +..-.++..+.+-+.++ ++.+|..|+++++.+..
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456778888888888 8778877777766665432 2 22333455566666666 78999999999987531
Q ss_pred -hhh-----HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc--c-cHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002996 76 -DKI-----TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--R-GFLESLKDLISDNNPMVVANAVAALAE 146 (860)
Q Consensus 76 -~e~-----~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~--~-~~~~~l~~lL~D~d~~V~~~al~~l~~ 146 (860)
..+ .+.+.+.+.+++.+.++.||+.|+.|+..+...+|+.+.. . .+++.+...+.|.++.|...|+..+..
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 111 1356777888888999999999999999999988876542 1 466777777788899999998887777
Q ss_pred HhhcC----------------C-CCchhc----cHHHHHHHHHHhcc------CChhHH----HHHHHHHHhccccCHHH
Q 002996 147 IEENS----------------S-RPIFEI----TSHTLSKLLTALNE------CTEWGQ----VFILDALSRYKAADARE 195 (860)
Q Consensus 147 i~~~~----------------~-~~~~~~----~~~~~~~Ll~~l~~------~~~w~q----~~il~~L~~~~~~~~~~ 195 (860)
+.... + ...+.. ....+..++..+.+ -+.|.. ...|..+....+. ..
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~ 363 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG
T ss_pred HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hh
Confidence 65431 0 111122 23344555555542 245732 2334444433332 22
Q ss_pred HHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChhhh
Q 002996 196 AENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTIL 273 (860)
Q Consensus 196 ~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~ 273 (860)
...++..+...+++.+..+..+| ..+..+.....++........+.+.|...++ .++.+|..++.++..++...+..+
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc
Confidence 44567777777888888777766 2333332211224344455567777777774 678999999999999998754321
Q ss_pred --hcc----ce-EEEeccCCcHHHHHHHHHHHHHhcCc--------------------ccHHHHHHHHHHhhhhcc---H
Q 002996 274 --AHE----IK-VFFCKYNDPIYVKMEKLEIMIKLASD--------------------RNIDQVLLEFKEYATEVD---V 323 (860)
Q Consensus 274 --~~~----~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~--------------------~Nv~~Iv~eL~~y~~~~d---~ 323 (860)
.++ +. .+.++.+ +..+|..++..|..++.. .-+..|+..|...+.+.+ .
T Consensus 444 ~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~ 522 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQN 522 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCST
T ss_pred ccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchh
Confidence 122 22 2233433 467788887777776532 134566666666654331 2
Q ss_pred HHHHHHHHHHHHHHH--------------------------------------------------------hhh-----h
Q 002996 324 DFVRKAVRAIGRCAI--------------------------------------------------------KLE-----R 342 (860)
Q Consensus 324 ~~~~~~i~~I~~la~--------------------------------------------------------k~~-----~ 342 (860)
.++..++.+++.++. .+. +
T Consensus 523 ~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 602 (876)
T 1qgr_A 523 NLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ 602 (876)
T ss_dssp THHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT
T ss_pred hHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhH
Confidence 344334444443332 222 2
Q ss_pred hHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhCc----ccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC
Q 002996 343 AAERCISVLLELIKIKV--NYVVQEAIIVIKDIFRRYP----NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 416 (860)
Q Consensus 343 ~~~~~v~~ll~ll~~~~--~~v~~e~i~~l~~i~~~~p----~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~ 416 (860)
.....+..++++++... .++..+++..+..++...+ .....++..+...+.+..++..+..++|.+|+.+..+.
T Consensus 603 ~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 603 ISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp THHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 22333444444444432 2455666666666655322 22344566666666654467788888888888654332
Q ss_pred C-----HHHHHHHHHhhCCC--CcHHHHHHHHHHHHHHhhcCCC
Q 002996 417 N-----ADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPT 453 (860)
Q Consensus 417 ~-----~~~~l~~~~~~~~~--e~~~v~~~iLta~~Kl~~~~p~ 453 (860)
. .++++..+++.+.. .+..+|..++.++..+....++
T Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 683 SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence 1 35677777776655 3567899999998888765543
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.32 E-value=7.8e-10 Score=128.34 Aligned_cols=435 Identities=12% Similarity=0.098 Sum_probs=260.8
Q ss_pred CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----hH--HHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhc
Q 002996 41 PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----IT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN 112 (860)
Q Consensus 41 ~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e-----~~--~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~ 112 (860)
++...-++..|.+-|+++++.+|..|+.+|+++...+ +. +..++.+.+.|.+ .++.+|+.|+.++.++....
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 3444456788888888999999999999999885321 22 2567778888865 58999999999999976531
Q ss_pred c--cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc-cHHHHHHHHHHhccCChhHHHHHHHHHHhcc
Q 002996 113 A--ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYK 189 (860)
Q Consensus 113 p--~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~ 189 (860)
. +.+.+.+.++.|.++|.+.|+.|...|+.+|..++...+...-.+ ....+..|++.+.+.++-.+......|..+.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 122234788999999999999999999999999987643321111 2346778888887766656666666776665
Q ss_pred ccCHHHHHH-----HHHHHhhhhcCCChHHHH-HH-HHHHHhhhccChHHHHHHH-HHhhhHHHhhcC-CChhHHHHHHH
Q 002996 190 AADAREAEN-----IVERVTPRLQHANCAVVL-SA-MILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALR 260 (860)
Q Consensus 190 ~~~~~~~~~-----ll~~v~~~l~~~n~aVv~-~a-~~~~~l~~~~~~~~~~~~~-~~~~~~L~~lls-~~~niry~aL~ 260 (860)
..+++.... .+..+...+++.++..+. .+ .++..+. .+++....+. ....+.|+.++. .+++++.-++.
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS--VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT--TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh--cCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 444333222 234455566555444333 33 2333332 1333322222 235667888874 67889999999
Q ss_pred HHHHHHhhChhh--hhccce-EEEeccCCcHHHHHHHHHHHHHhcCcc--cHHH-----HHHHHHHhhhhc--cHHHHHH
Q 002996 261 NINLIVQRRPTI--LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR--NIDQ-----VLLEFKEYATEV--DVDFVRK 328 (860)
Q Consensus 261 ~l~~l~~~~p~~--~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~--Nv~~-----Iv~eL~~y~~~~--d~~~~~~ 328 (860)
.|..++...+.. ....+. .+..+.+++..+|..+..+|..++..+ +... .++.|.+.+.+. +.+++..
T Consensus 250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~ 329 (529)
T 1jdh_A 250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence 999998754321 111122 122356778899999999999998743 4443 345666666542 3688999
Q ss_pred HHHHHHHHHHhhhhhHH--------HHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHhhcc
Q 002996 329 AVRAIGRCAIKLERAAE--------RCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLDT 394 (860)
Q Consensus 329 ~i~~I~~la~k~~~~~~--------~~v~~ll~ll~~~~~-~v~~e~i~~l~~i~~~~p~~~~-----~~i~~L~~~l~~ 394 (860)
++.+++.++...+.... ..+..+++++....+ .+..++...+.++... ++.+. .+++.|++.+.+
T Consensus 330 a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR 408 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHH
Confidence 99999998764332211 236778888887664 6777888788887653 33333 345667776653
Q ss_pred CCchHHHHHHHHHHhh--cccccCCHHH--------------------------HHHHHHhhCCCCcHHHHHHHHHHHHH
Q 002996 395 LDEPEAKASMIWIIGE--YAERIDNADE--------------------------LLESFLESFPEEPAQVQLQLLTATVK 446 (860)
Q Consensus 395 ~~~~~~~~~~~wilGE--y~~~i~~~~~--------------------------~l~~~~~~~~~e~~~v~~~iLta~~K 446 (860)
.+++.+..++|.++. +.+-. .+.+ .+..+++-..+..+.++.....++..
T Consensus 409 -~~~~v~~~a~~~l~n~~~~~~~-~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~ 486 (529)
T 1jdh_A 409 -AHQDTQRRTSMGGTQQQFVEGV-RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486 (529)
T ss_dssp -HHHHHC-----------CBTTB-CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred -HhHHHHHHHhcccCchhhhccc-cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHH
Confidence 345566777887775 32211 0111 12333343445567777777777666
Q ss_pred HhhcCCCCChHHH------HHHHHHhcccCCCChHHHHHHHHHHH
Q 002996 447 LFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWR 485 (860)
Q Consensus 447 l~~~~p~~~~~~~------i~~~l~~~~~~s~~~evrdRA~~y~~ 485 (860)
+... ++ .... +..+.++ . ++.|++||.+|.....
T Consensus 487 l~~~-~~--~~~~i~~~~~~~~L~~l-~-~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 487 LAQD-KE--AAEAIEAEGATAPLTEL-L-HSRNEGVATYAAAVLF 526 (529)
T ss_dssp HTTS-HH--HHHHHHHTTCHHHHHHG-G-GCSSHHHHHHHHHHHH
T ss_pred HhcC-HH--HHHHHHHcCChHHHHHH-h-cCCCHHHHHHHHHHHH
Confidence 6532 11 1111 2233333 2 4567788877765543
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.29 E-value=7.3e-10 Score=142.22 Aligned_cols=440 Identities=11% Similarity=0.123 Sum_probs=281.5
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCCc-HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh--------
Q 002996 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPD-LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD-------- 76 (860)
Q Consensus 9 ~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~e-l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~~-------- 76 (860)
.+...+++.+.+++...|+.+...+..+++.-++ ..--+++.+.+-+.|+++.+|..|..+|+.+. .+
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 4566677888899999999999999998875544 33456788888899999999999998888764 12
Q ss_pred -hhHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 77 -KITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 77 -e~~~~l~~~v~~~l~-d~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
...+.+++.+.+++. +.++.+|..|+.++..+....++.+.. ..+++.+...|.|.++.|...|+.++..+....+
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 257889999999998 489999999999999998766654431 2467777788889999999999999999887654
Q ss_pred CCchhccHHHHHHHHHHhccCChh----HHHHHHHHHHhccccCH-HHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhh
Q 002996 153 RPIFEITSHTLSKLLTALNECTEW----GQVFILDALSRYKAADA-REAENIVERVTPRLQHANCAVVLSA-MILQQMEL 226 (860)
Q Consensus 153 ~~~~~~~~~~~~~Ll~~l~~~~~w----~q~~il~~L~~~~~~~~-~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~ 226 (860)
...+ ...+..|+..+.+.++| .-+..+..+....+..- .....++..+...+++.++.|.-.+ ..+..+-.
T Consensus 208 ~~~~---~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 208 NIVF---VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp ---C---TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3332 23456666666544333 12233333332222110 1123466666666766666554333 12222211
Q ss_pred ccChHHHHHHHHHhhhHHHhhcCC--------------------------------------ChhHHHHHHHHHHHHHhh
Q 002996 227 ITSTDVVRNLCKKMAPPLVTLLSA--------------------------------------EPEIQYVALRNINLIVQR 268 (860)
Q Consensus 227 ~~~~~~~~~~~~~~~~~L~~lls~--------------------------------------~~niry~aL~~l~~l~~~ 268 (860)
....+ .......+.+.+...+.. ..++|..++..+..++..
T Consensus 285 ~~~~~-~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 285 RCPKE-VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp CTTCC-CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred HChHH-HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 11111 112333445555554421 124699999999999987
Q ss_pred Chhhhhccc----eE-EEeccCCcHHHHHHHHHHHHHhcCc---------------------ccHHH----HHHHHHHhh
Q 002996 269 RPTILAHEI----KV-FFCKYNDPIYVKMEKLEIMIKLASD---------------------RNIDQ----VLLEFKEYA 318 (860)
Q Consensus 269 ~p~~~~~~~----~~-~~~l~~d~~~Ik~~~L~lL~~l~~~---------------------~Nv~~----Iv~eL~~y~ 318 (860)
.|..+.+++ .. ...+.+....+|..+++.+..++.. .-+.. |++-+...+
T Consensus 364 ~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l 443 (1230)
T 1u6g_C 364 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQM 443 (1230)
T ss_dssp CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHh
Confidence 775444332 11 2234455688999999887766531 11233 444444447
Q ss_pred hhccHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHhC-ccc----HHHHHHH
Q 002996 319 TEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVN--YVVQEAIIVIKDIFRRY-PNT----YESIIAT 387 (860)
Q Consensus 319 ~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~ll~~~~~--~v~~e~i~~l~~i~~~~-p~~----~~~~i~~ 387 (860)
.+.+...+..++..++.++...+ +..+.++..++++|..... .+..+++..+..++... ++. ...++..
T Consensus 444 ~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~ 523 (1230)
T 1u6g_C 444 KEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPP 523 (1230)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHH
Confidence 77888888889999999887644 3456778888888876643 66777777888777643 332 2234555
Q ss_pred HHHhhccCCchHHHHHHHHHHhhcccccCC------------HHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHhhcCCC
Q 002996 388 LCESLDTLDEPEAKASMIWIIGEYAERIDN------------ADELLESFLESF--PEEPAQVQLQLLTATVKLFLKKPT 453 (860)
Q Consensus 388 L~~~l~~~~~~~~~~~~~wilGEy~~~i~~------------~~~~l~~~~~~~--~~e~~~v~~~iLta~~Kl~~~~p~ 453 (860)
|.+.+.+ ..+..+..+++.+|+....+.. ...++..++..+ .+.+.++|...+.++..+.....+
T Consensus 524 L~~~l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~ 602 (1230)
T 1u6g_C 524 VVACVGD-PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD 602 (1230)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHcc-cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc
Confidence 6665654 3444545556666655432211 246677777666 567889999999999998876543
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.29 E-value=1.5e-09 Score=129.58 Aligned_cols=438 Identities=11% Similarity=0.089 Sum_probs=272.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----hH--HHHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhcc-
Q 002996 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----IT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA- 113 (860)
Q Consensus 43 l~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e-----~~--~~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p- 113 (860)
+..-++..|.+=|+++++.+|..|+.+|+++...+ +. +..++.+.+.|.+ .++.+|+.|+.++..+.....
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 33345667777778899999999999999875322 11 3567778888876 489999999999987654311
Q ss_pred -cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc-cHHHHHHHHHHhccCChhHHHHHHHHHHhcccc
Q 002996 114 -ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAA 191 (860)
Q Consensus 114 -~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~ 191 (860)
..+.+.+.++.|.++|.+.++.|...|+.+|..++.........+ ....+..|++.|...++-.+...+++|..+...
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 122234688999999999999999999999999987643221111 134677888888877765666666777766644
Q ss_pred CHHHHHH-----HHHHHhhhhcCCCh-HHHHHH-HHHHHhhhccChHHHHHHHH-HhhhHHHhhcC-CChhHHHHHHHHH
Q 002996 192 DAREAEN-----IVERVTPRLQHANC-AVVLSA-MILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNI 262 (860)
Q Consensus 192 ~~~~~~~-----ll~~v~~~l~~~n~-aVv~~a-~~~~~l~~~~~~~~~~~~~~-~~~~~L~~lls-~~~niry~aL~~l 262 (860)
+++.... .+..+...+++.+. .+...+ .++..+. ..++....++. .+.+.|+.++. .++.++..++..|
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs--~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L 248 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS--VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT--TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh--cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4433332 34556667766544 333333 2333332 13333333322 34667888874 6789999999999
Q ss_pred HHHHhhChhh--hhccce-EEEeccCCcHHHHHHHHHHHHHhcCcc--cHHH-----HHHHHHHhhhhcc--HHHHHHHH
Q 002996 263 NLIVQRRPTI--LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR--NIDQ-----VLLEFKEYATEVD--VDFVRKAV 330 (860)
Q Consensus 263 ~~l~~~~p~~--~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~--Nv~~-----Iv~eL~~y~~~~d--~~~~~~~i 330 (860)
..++...+.. ...-+. .+..+.+++..+|..+...|..|+... |... .++.|.+++.+.+ .+++..++
T Consensus 249 ~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~ 328 (644)
T 2z6h_A 249 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328 (644)
T ss_dssp HHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHH
Confidence 9998654431 111122 123355777899999999999998743 3333 4567777776543 68999999
Q ss_pred HHHHHHHHhhhhh--------HHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHhhccCC
Q 002996 331 RAIGRCAIKLERA--------AERCISVLLELIKIKV-NYVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLDTLD 396 (860)
Q Consensus 331 ~~I~~la~k~~~~--------~~~~v~~ll~ll~~~~-~~v~~e~i~~l~~i~~~~p~~~~-----~~i~~L~~~l~~~~ 396 (860)
.+|+.++...+.+ ....+..++++|.... ..+..++...+.++... ++.+. .++..|++.+.+ .
T Consensus 329 ~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~~~~i~~Lv~lL~~-~ 406 (644)
T 2z6h_A 329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR-A 406 (644)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH-H
T ss_pred HHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHHcCCHHHHHHHHhc-c
Confidence 9999997543221 1235788888888765 36788888888887653 33222 245666666643 1
Q ss_pred chHHHHHHHHHHhh--cccccC-----------------C---H-----HHHHHHHHhhCCCCcHHHHHHHHHHHHHHhh
Q 002996 397 EPEAKASMIWIIGE--YAERID-----------------N---A-----DELLESFLESFPEEPAQVQLQLLTATVKLFL 449 (860)
Q Consensus 397 ~~~~~~~~~wilGE--y~~~i~-----------------~---~-----~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~ 449 (860)
+++.+..++|.++. +.+-.. + . ...+..+++-..+.++.++...+.++.++..
T Consensus 407 ~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 23334444555544 211100 0 0 0123445555667788899999999888874
Q ss_pred cCCCCChHHH------HHHHHHhcccCCCChHHHHHHHHHHHHhcC
Q 002996 450 KKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLST 489 (860)
Q Consensus 450 ~~p~~~~~~~------i~~~l~~~~~~s~~~evrdRA~~y~~ll~~ 489 (860)
. ++ .... +..+.+. . .+.|++||..|..-..-+..
T Consensus 487 ~-~~--~~~~i~~~g~l~~L~~l-l-~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 487 D-KE--AAEAIEAEGATAPLTEL-L-HSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp S-HH--HHHHHHHTTCHHHHHHH-T-TCSCHHHHHHHHHHHHHHTT
T ss_pred C-HH--HHHHHHHcCChhHHHHH-H-cCCCHHHHHHHHHHHHHHhc
Confidence 3 21 2222 2334444 2 46799999999888776654
No 30
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.29 E-value=1.6e-09 Score=133.86 Aligned_cols=469 Identities=13% Similarity=0.058 Sum_probs=265.0
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCCCCcHH----H-HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh------------
Q 002996 15 VNCMQTENLELKKLVYLYLINYAKSQPDLA----I-LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK------------ 77 (860)
Q Consensus 15 i~l~~s~~~~~Krl~Yl~l~~~~~~~~el~----~-L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e------------ 77 (860)
..++.+.+...|+.++-.+..++...++.. . -++..+.+-+.+.++.+|..|+.+++.+....
T Consensus 223 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 345667788888888888887776655421 1 33455566677889999999998887664321
Q ss_pred ---------------hHHHHHHHHHhhhc-------CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChh
Q 002996 78 ---------------ITEYLCDPLQRCLK-------DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (860)
Q Consensus 78 ---------------~~~~l~~~v~~~l~-------d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~ 135 (860)
..+.+++.+.+.+. |.++.+|+.|+.|+..+....++.+-+ .+++.+...+.|.++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWR 381 (876)
T ss_dssp HSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHTTCSSHH
T ss_pred cCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHH-HHHHHHHHHccCCChH
Confidence 12556666767764 457899999999999998877654432 4778888999999999
Q ss_pred HHHHHHHHHHHHhhcCCCC-chhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccC------HHHHHHHHHHHhhhhc
Q 002996 136 VVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD------AREAENIVERVTPRLQ 208 (860)
Q Consensus 136 V~~~al~~l~~i~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~------~~~~~~ll~~v~~~l~ 208 (860)
+..+|+.++..+....+.. .-......+..++..+.+.++..+...+..|.++...- ......+++.+...++
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 461 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc
Confidence 9999999999887543211 12234456777788888888888877777777765431 2334567777777776
Q ss_pred CCChHHHHHH-HHHHHh-hhcc------------ChHHHHHHHHHhhhHHHhhcCC----ChhHHHHHHHHHHHHHh---
Q 002996 209 HANCAVVLSA-MILQQM-ELIT------------STDVVRNLCKKMAPPLVTLLSA----EPEIQYVALRNINLIVQ--- 267 (860)
Q Consensus 209 ~~n~aVv~~a-~~~~~l-~~~~------------~~~~~~~~~~~~~~~L~~lls~----~~niry~aL~~l~~l~~--- 267 (860)
+. +.|..+| ..+..+ .... ..+.....+..+.+.|..++.. +.++|..+++++..++.
T Consensus 462 ~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 462 AE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred CC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 63 5554444 111111 1100 0000011122334445554421 23455555555444433
Q ss_pred -----------------------------------------------------hCh-hhhhccce-----EEEeccCCc-
Q 002996 268 -----------------------------------------------------RRP-TILAHEIK-----VFFCKYNDP- 287 (860)
Q Consensus 268 -----------------------------------------------------~~p-~~~~~~~~-----~~~~l~~d~- 287 (860)
..+ .-+.++.. .+..+.+..
T Consensus 541 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 620 (876)
T 1qgr_A 541 KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG 620 (876)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC
Confidence 222 22222211 111122221
Q ss_pred -HHHHHHHHHHHHHhcCc------ccHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHH
Q 002996 288 -IYVKMEKLEIMIKLASD------RNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELI 355 (860)
Q Consensus 288 -~~Ik~~~L~lL~~l~~~------~Nv~~Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~ll 355 (860)
.++|..++.++..++.. .-+..+++.|...+.+. +.+++..++..++.++.... +.....+..+++.+
T Consensus 621 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 700 (876)
T 1qgr_A 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENL 700 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 36777777777666541 22455666666666665 67777777777777776543 33445556666666
Q ss_pred Hhh--hhhhHHHHHHHHHHHHHhCccc----HHHHHHHHHHhhccCC---ch-------HHHHHHH-------HHHhhcc
Q 002996 356 KIK--VNYVVQEAIIVIKDIFRRYPNT----YESIIATLCESLDTLD---EP-------EAKASMI-------WIIGEYA 412 (860)
Q Consensus 356 ~~~--~~~v~~e~i~~l~~i~~~~p~~----~~~~i~~L~~~l~~~~---~~-------~~~~~~~-------wilGEy~ 412 (860)
... ...+...++..+.++....++. -..++..+.+.+..-. ++ ..+..+. -.+|+..
T Consensus 701 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~ 780 (876)
T 1qgr_A 701 GNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQ 780 (876)
T ss_dssp TCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 542 2345566666666666533222 2234444444332111 11 2232222 1233310
Q ss_pred -------ccc-CCHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHHhhcCCC-CChH-----HHHHHHHHhcccCCCChHH
Q 002996 413 -------ERI-DNADELLESFLESFPEE--PAQVQLQLLTATVKLFLKKPT-EGPQ-----QMIQVVLNNATVETDNPDL 476 (860)
Q Consensus 413 -------~~i-~~~~~~l~~~~~~~~~e--~~~v~~~iLta~~Kl~~~~p~-~~~~-----~~i~~~l~~~~~~s~~~ev 476 (860)
+.+ +..+.++..+.....+. +..+|...+.++.++....+. . .. ..+..+++.+. ++.++++
T Consensus 781 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~i~~ll~~~l-~~~~~~~ 858 (876)
T 1qgr_A 781 ENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDV-LKLVEARPMIHELLTEGR-RSKTNKA 858 (876)
T ss_dssp SSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHH-HHHHHTSHHHHHHHHHHH-HCSCHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHH-HHHHHhcHHHHHHHHHHh-hcCCHhH
Confidence 111 11234443332222333 678888888888888776654 2 22 34555666343 4577889
Q ss_pred HHHHHHHHHHh
Q 002996 477 RDRAYIYWRLL 487 (860)
Q Consensus 477 rdRA~~y~~ll 487 (860)
|+-|..-...+
T Consensus 859 r~~a~~a~~~~ 869 (876)
T 1qgr_A 859 KTLARWATKEL 869 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887766544
No 31
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.24 E-value=2.1e-09 Score=128.27 Aligned_cols=368 Identities=15% Similarity=0.156 Sum_probs=242.5
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHH----HHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh--------h
Q 002996 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA----ILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--------D 76 (860)
Q Consensus 9 ~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~----~L~in~l~kDl~~~n~~ir~lALr~l~~i~~--------~ 76 (860)
...+.++.+++|++...++-++.++...+.. ++.. -.-+..|.+=+++.++.+|..|+-+||+++. +
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~ 368 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIR 368 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCC
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCcccc
Confidence 3456777899999999999999998886544 4422 2234566777788899999999999998852 1
Q ss_pred hh----HHHHHHHHHhhhcCC--ChHHHHHHHHHHHHHHhhcc---cccccccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002996 77 KI----TEYLCDPLQRCLKDD--DPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (860)
Q Consensus 77 e~----~~~l~~~v~~~l~d~--~~~VRk~A~~~l~kl~~~~p---~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i 147 (860)
.+ ++.+.+.+.++|.++ ++-+|+.|+.++..+-...+ +++.+.++++.|.++|...|+.++..|+.+|..|
T Consensus 369 ~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NL 448 (810)
T 3now_A 369 PFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNL 448 (810)
T ss_dssp SSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 22 367788899999987 89999999999998865332 3444568999999999999999999999999999
Q ss_pred hhcCCCC----------ch-----------------------hccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHH
Q 002996 148 EENSSRP----------IF-----------------------EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR 194 (860)
Q Consensus 148 ~~~~~~~----------~~-----------------------~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~ 194 (860)
......+ .+ -+-...+..|+..+...++=.|.....+|..... +++
T Consensus 449 t~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~ 527 (810)
T 3now_A 449 CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKE 527 (810)
T ss_dssp TTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHH
T ss_pred cCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHH
Confidence 8642100 00 0011345666667777788888888888888763 443
Q ss_pred HHHHH-----HHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHH--HHHHHHhhhHHHhhcCCC--hhHHHHHHHHHHH
Q 002996 195 EAENI-----VERVTPRLQHANCAVVLSA-MILQQMELITSTDVV--RNLCKKMAPPLVTLLSAE--PEIQYVALRNINL 264 (860)
Q Consensus 195 ~~~~l-----l~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~--~~~~~~~~~~L~~lls~~--~niry~aL~~l~~ 264 (860)
....+ +..+..+|++.++.+.-.| ..+..+-...+++.. .+....++++|+.||+++ ...++-++.+|..
T Consensus 528 ~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 33333 4456667777666554444 222222212233321 011224688999999643 3456889999999
Q ss_pred HHhhChh----hhhcc-ce-EEEeccCCcHHHHHHHHHHHHHhcCcccH-HH------HHHHHHHhhhhccHHHHHHHHH
Q 002996 265 IVQRRPT----ILAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLASDRNI-DQ------VLLEFKEYATEVDVDFVRKAVR 331 (860)
Q Consensus 265 l~~~~p~----~~~~~-~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv-~~------Iv~eL~~y~~~~d~~~~~~~i~ 331 (860)
|+...++ ++... +. ...++.+++..|++.|+++|..|+..... .. .++-|..++...|.+.++.++.
T Consensus 608 La~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ 687 (810)
T 3now_A 608 LASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAG 687 (810)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Confidence 8875432 22211 22 33445677788999999999998864322 22 3445667777778888888888
Q ss_pred HHHHHHHhhhhhHH------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCc
Q 002996 332 AIGRCAIKLERAAE------RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 378 (860)
Q Consensus 332 ~I~~la~k~~~~~~------~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p 378 (860)
+|+.++...+.... ..+..|++|+..+...+..++...+.++....+
T Consensus 688 ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 688 ALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 88888764332222 234466666666555555556556666554333
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.23 E-value=2.4e-09 Score=124.51 Aligned_cols=328 Identities=14% Similarity=0.113 Sum_probs=217.5
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhhcc----cccccccHHHHHHHhhcCCC-hhHHHHHHHHHHHHhhcCCCCchh
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNN-PMVVANAVAALAEIEENSSRPIFE 157 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p----~~~~~~~~~~~l~~lL~D~d-~~V~~~al~~l~~i~~~~~~~~~~ 157 (860)
++.+.+.|.+.++.+|..|+.++.++....+ +.+...+.++.|.++|.+.+ +.+...|+.+|..++...+.....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5667888889999999999999999977554 12223478899999998876 999999999999998753221111
Q ss_pred -ccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-----HHHHHhhhh-cCCChHHHHHH-HHHHHhhhccC
Q 002996 158 -ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRL-QHANCAVVLSA-MILQQMELITS 229 (860)
Q Consensus 158 -~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-----ll~~v~~~l-~~~n~aVv~~a-~~~~~l~~~~~ 229 (860)
.....+..|+..|.+.++-.+...+..|..+...++..... .+..+...+ .+.+..+...| .++..+... .
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~-~ 234 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG-K 234 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS-S
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-C
Confidence 11236778888888888888888888888877554432222 345666677 45666776665 333333211 1
Q ss_pred hHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhh----hhc-cce-EEEeccCCcHHHHHHHHHHHHHhc
Q 002996 230 TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTI----LAH-EIK-VFFCKYNDPIYVKMEKLEIMIKLA 302 (860)
Q Consensus 230 ~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~----~~~-~~~-~~~~l~~d~~~Ik~~~L~lL~~l~ 302 (860)
+.........+.+.|+.++ +.+++++.-++.+|..++...+.. +.. -+. .+.++.+.+..++..++..|..++
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 1111223345677788888 478899999999999998654432 111 122 233456667889999999999988
Q ss_pred Ccc--cHHH-----HHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHHHhhhhhhHHHHHHH
Q 002996 303 SDR--NIDQ-----VLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKVNYVVQEAIIV 369 (860)
Q Consensus 303 ~~~--Nv~~-----Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~~~~~~-----~~v~~ll~ll~~~~~~v~~e~i~~ 369 (860)
... .... ++..|...+.+. +..++..++.+|+.++...+.... ..+..|++++......+..+++..
T Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 633 2222 456677777777 888999999999988863222111 335677788877766777777777
Q ss_pred HHHHHHh-CcccHHH-----HHHHHHHhhccCCchHHHHHHHHHHhhcc
Q 002996 370 IKDIFRR-YPNTYES-----IIATLCESLDTLDEPEAKASMIWIIGEYA 412 (860)
Q Consensus 370 l~~i~~~-~p~~~~~-----~i~~L~~~l~~~~~~~~~~~~~wilGEy~ 412 (860)
+.++... .++...+ ++..|++.+.+ .+++.+..++|.++...
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 8777765 4443332 35556666654 45666666777776653
No 33
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.21 E-value=6.3e-10 Score=126.52 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=154.6
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCCh---hhhHHHHHHHHHhhhcC--CChHHHHHHHHHHHHHHhhc-----------
Q 002996 49 NTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKD--DDPYVRKTAAICVAKLYDIN----------- 112 (860)
Q Consensus 49 n~l~kDl~~~n~~ir~lALr~l~~i~~---~e~~~~l~~~v~~~l~d--~~~~VRk~A~~~l~kl~~~~----------- 112 (860)
..+...+.++|+.+|-.|-..|..+.. ++.... +...+.+ .++.||..|+..+-++.+.+
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~----L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVE----LSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHH----HHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 345566788999999999999987654 343333 4444444 47899999999999886432
Q ss_pred ----ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-CchhccHHHHHHHHHHhccC--ChhHHHHHHHHH
Q 002996 113 ----AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSHTLSKLLTALNEC--TEWGQVFILDAL 185 (860)
Q Consensus 113 ----p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~-~~~~~~~~~~~~Ll~~l~~~--~~w~q~~il~~L 185 (860)
|+... ..+.+.+..+|.+.++.| ..+..++..|...... ..| +..+..|+..+.+. ++-.+...+.+|
T Consensus 80 ~~~l~~~~~-~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w---~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 80 WLAIDANAR-REVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW---PELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp HHTSCHHHH-HHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred hhcCCHHHH-HHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc---HHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 11111 134556667788888888 7777788888765421 234 34567777777666 554555566666
Q ss_pred HhccccC-----HHHHHHHHHHHhhhhcCC--ChHHHHHH--HHHHHhhhccChHHH-HHHHHHhhhHHHhhc-CCChhH
Q 002996 186 SRYKAAD-----AREAENIVERVTPRLQHA--NCAVVLSA--MILQQMELITSTDVV-RNLCKKMAPPLVTLL-SAEPEI 254 (860)
Q Consensus 186 ~~~~~~~-----~~~~~~ll~~v~~~l~~~--n~aVv~~a--~~~~~l~~~~~~~~~-~~~~~~~~~~L~~ll-s~~~ni 254 (860)
..+...- ......++..+...+++. ++.|..+| .+...+..+. .... ......+.+.|..++ +.++++
T Consensus 155 ~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK-ANFDKESERHFIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH-HHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence 6543211 122345777777888877 67777766 2222222111 0000 001111244455555 468899
Q ss_pred HHHHHHHHHHHHhhChhhhhccce-E-----EEeccCCcHHHHHHHHHHHHHhcCc
Q 002996 255 QYVALRNINLIVQRRPTILAHEIK-V-----FFCKYNDPIYVKMEKLEIMIKLASD 304 (860)
Q Consensus 255 ry~aL~~l~~l~~~~p~~~~~~~~-~-----~~~l~~d~~~Ik~~~L~lL~~l~~~ 304 (860)
|-.+++.|..++..+|..+.+|+. . +.++.+++..+|..+++.+..++..
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999887766654 1 1234566788999999988887754
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.18 E-value=6.1e-08 Score=112.06 Aligned_cols=337 Identities=15% Similarity=0.140 Sum_probs=214.7
Q ss_pred cchHHHhHhccCCCcchHHHHHHHHHHhc-C-CCCcHHHH----HHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhhH
Q 002996 9 SLFTDVVNCMQTENLELKKLVYLYLINYA-K-SQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKIT 79 (860)
Q Consensus 9 ~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~-~-~~~el~~L----~in~l~kDl~-~~n~~ir~lALr~l~~i~--~~e~~ 79 (860)
+-..++|+.+.|+|.+.+.-+--.+..++ . .+|.+-.+ ++..|.+-|+ +.++.++.-|.++|++|. +++..
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 45789999999999998888777776554 2 34432112 3667888886 457899999999998873 45444
Q ss_pred HH-----HHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCCh-----hHHHHHHHHHHH
Q 002996 80 EY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALAE 146 (860)
Q Consensus 80 ~~-----l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~D~d~-----~V~~~al~~l~~ 146 (860)
.. .++.+.++|.++++.||..|+.|+..+...+|+ .+.+.+.++.|..+|.+.+. .++.+++.++..
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 33 478899999999999999999999999876654 34445678889999976543 456677888888
Q ss_pred HhhcC-CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-----HHHHHhhhhcCCChHHHHHH-H
Q 002996 147 IEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSA-M 219 (860)
Q Consensus 147 i~~~~-~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-----ll~~v~~~l~~~n~aVv~~a-~ 219 (860)
++... +...+......+..|.+.+...++..+......|..+...+.+.... ++..+..+|++.+..|...| .
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 77653 22334444566777888888888988888888888876554433222 34566777888888777666 2
Q ss_pred HHHHhhhccChHHHHHHH-HHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHH
Q 002996 220 ILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEI 297 (860)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~l 297 (860)
.+..+-. .+.+....++ ..+.+.|..+| +.++++|..+..+|..|+...+.... .
T Consensus 297 aL~nl~~-~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~----------------------~ 353 (510)
T 3ul1_B 297 AIGNIVT-GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ----------------------Q 353 (510)
T ss_dssp HHHHHTT-SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH----------------------H
T ss_pred HHHHhhc-CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH----------------------H
Confidence 2222211 1122222221 12344555666 35667777777777776644332110 0
Q ss_pred HHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 002996 298 MIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIVIK 371 (860)
Q Consensus 298 L~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~------~~~v~~ll~ll~~~~~~v~~e~i~~l~ 371 (860)
+ .+ ..++.-|...+.+.+.+++++++.+|+.++....... .-++..|+++|+.....+...++..+.
T Consensus 354 v---~~----~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 354 V---VN----HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426 (510)
T ss_dssp H---HH----TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred H---Hh----cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 00 1245556666777788888888888888776432211 123555666666655555555555555
Q ss_pred HHHH
Q 002996 372 DIFR 375 (860)
Q Consensus 372 ~i~~ 375 (860)
+|++
T Consensus 427 nil~ 430 (510)
T 3ul1_B 427 NIFQ 430 (510)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 35
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=4.9e-10 Score=118.91 Aligned_cols=238 Identities=14% Similarity=0.097 Sum_probs=143.0
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 002996 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (860)
.++.+.+.|.|+|+.+|..|+++|+.++.++.+ +.+.+++.|.++.||..|+.++.++... ++.+. .+++.+.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~--~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDAV----RLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCED--NVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHH----HHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHH--HHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchHH----HHHHHHHcCCCHHHHHHHHHHHHHhccc-cccch--HHHHHHH
Confidence 467889999999999999999999999976554 5567888999999999999999887532 22222 2455665
Q ss_pred -HhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhh
Q 002996 127 -DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (860)
Q Consensus 127 -~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~ 205 (860)
.+++|.|+.|..+++.+|..+....+. .....+..|. .
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~-------------------------------------~ 135 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQ-------------------------------------I 135 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHH-------------------------------------H
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHH-------------------------------------H
Confidence 357899999999999999888654310 0112223333 3
Q ss_pred hhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEecc
Q 002996 206 RLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 284 (860)
Q Consensus 206 ~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~ 284 (860)
.+++.++.|...| ..++..+..++ ..+.|..++ +.++.+|+.++..|..+....+..+..- +..+.
T Consensus 136 ~l~d~~~~vR~~a--~~aL~~~~~~~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L---~~~l~ 202 (280)
T 1oyz_A 136 TAFDKSTNVRRAT--AFAISVINDKA--------TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF---VEMLQ 202 (280)
T ss_dssp HTTCSCHHHHHHH--HHHHHTC---C--------CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHH---HHHTT
T ss_pred HhhCCCHHHHHHH--HHHHHhcCCHH--------HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHH---HHHhc
Confidence 4444555554444 12222222211 233444444 3455666666666665532233322111 11234
Q ss_pred CCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 002996 285 NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI 357 (860)
Q Consensus 285 ~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~ 357 (860)
+++..+|..++..|..+.++..+..++..| .+. +++..++.+++.++.. .++..|.+++..
T Consensus 203 d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l----~d~--~vr~~a~~aL~~i~~~------~~~~~L~~~l~~ 263 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKDKRVLSVLCDEL----KKN--TVYDDIIEAAGELGDK------TLLPVLDTMLYK 263 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTCGGGHHHHHHHH----TSS--SCCHHHHHHHHHHCCG------GGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCHhhHHHHHHHh----cCc--cHHHHHHHHHHhcCch------hhhHHHHHHHhc
Confidence 556777777777777777665554444433 332 2666777777766542 345555666543
No 36
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.13 E-value=7.9e-09 Score=119.80 Aligned_cols=432 Identities=12% Similarity=0.050 Sum_probs=264.9
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHH-H----HHHHHHHhhcC-CCCHHHHhHHHHHhcCCCh-hhhHH--
Q 002996 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA-I----LAVNTFVKDSQ-DPNPLIRALAVRTMGCIRV-DKITE-- 80 (860)
Q Consensus 10 ~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~-~----L~in~l~kDl~-~~n~~ir~lALr~l~~i~~-~e~~~-- 80 (860)
..+..++++.+++...+.-+-.++..++..++... + =++..+.+-|. ++++.+|-.|+++|.++.. ++...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 46777889999999999888888888876543311 1 13455666664 3588999999999888753 22222
Q ss_pred ---HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 81 ---YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 81 ---~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
..++.+.+++.+.++-||+.|+.++.++...+++. +.+.+.++.|.++|.+.++.+...+..+|..+...++..
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 35778899999999999999999999998876542 223578999999999999999988888888776532111
Q ss_pred chhc-cHHHHHHHHHHhccCCh-hHHHHHHHHHHhccccC--HHHH--HHHHHHHhhhhcCCChHHHHHH-HHHHHhhhc
Q 002996 155 IFEI-TSHTLSKLLTALNECTE-WGQVFILDALSRYKAAD--AREA--ENIVERVTPRLQHANCAVVLSA-MILQQMELI 227 (860)
Q Consensus 155 ~~~~-~~~~~~~Ll~~l~~~~~-w~q~~il~~L~~~~~~~--~~~~--~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~ 227 (860)
...+ ....+..|+..+.+.++ ..+....++|..+.... .... ...+..+...+++.++.++.++ .++..+...
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 1000 11235556666655443 23333444444433211 1111 1346677777877777777666 233333111
Q ss_pred c-ChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhh---h-hcc-ce-EEEecc--CCcHHHHHHHHHH
Q 002996 228 T-STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTI---L-AHE-IK-VFFCKY--NDPIYVKMEKLEI 297 (860)
Q Consensus 228 ~-~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~---~-~~~-~~-~~~~l~--~d~~~Ik~~~L~l 297 (860)
. ..+. ...+.+.|+.++ +.+++++..+...|..++...+.. + ... +. .+..+. +++..++..++..
T Consensus 258 ~~~~~~----~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 258 ATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp CTTCSC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhhHH----HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 1111 124567788888 478999999999999998765421 1 111 11 112222 3447899999999
Q ss_pred HHHhcCcc--c---HHH-----HHHHHHHhhhhcc-HHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHhhhhhh
Q 002996 298 MIKLASDR--N---IDQ-----VLLEFKEYATEVD-VDFVRKAVRAIGRCAIKLERAA----ERCISVLLELIKIKVNYV 362 (860)
Q Consensus 298 L~~l~~~~--N---v~~-----Iv~eL~~y~~~~d-~~~~~~~i~~I~~la~k~~~~~----~~~v~~ll~ll~~~~~~v 362 (860)
|..++... + ... .++.|...+.+.+ .+++..++..|+.++..-.... ...+..+++++......+
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 99998642 1 112 3455667776655 5899999999999885322111 134677888887654444
Q ss_pred HHH----------------------HHHHHHHHHHhCcccHH-----HHHHHHHHhhccCCchHHHHHHHHHHhhccccc
Q 002996 363 VQE----------------------AIIVIKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAERI 415 (860)
Q Consensus 363 ~~e----------------------~i~~l~~i~~~~p~~~~-----~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i 415 (860)
..+ ++..+..+.. +++.+. .++..|++.+.+ ..++.+..++|.+++.+..-
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~-~~~~v~~~a~~~l~~l~~~~ 491 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQDK 491 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcC-CchHHHHHHHHHHHHHhcCH
Confidence 332 2223333322 233222 234667777765 45778888999999877431
Q ss_pred CCHH-----HHHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 002996 416 DNAD-----ELLESFLESFPEEPAQVQLQLLTATVKL 447 (860)
Q Consensus 416 ~~~~-----~~l~~~~~~~~~e~~~v~~~iLta~~Kl 447 (860)
.... ..++.+.+-..+++++|+.....++.++
T Consensus 492 ~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1111 1123333334457888888888887765
No 37
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.11 E-value=5.9e-08 Score=115.89 Aligned_cols=399 Identities=13% Similarity=0.093 Sum_probs=262.7
Q ss_pred hHHHhH-hccCCCcchHHHHHHHHHHhcCCCCcHHHH------HHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----h
Q 002996 11 FTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAIL------AVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----I 78 (860)
Q Consensus 11 f~~vi~-l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L------~in~l~kDl~~~n~~ir~lALr~l~~i~~~e-----~ 78 (860)
+-+.++ .+...+...|-.+.-++..++.-.+|..-- ++..|.+=+.++++.++--|+.+++.+.... +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I 327 (810)
T 3now_A 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKAL 327 (810)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTT
T ss_pred HHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 334443 466788888888899999999888875432 3466778888999999999998888876432 2
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh---ccc--cccc---ccHHHHHHHhhcCC--ChhHHHHHHHHHHHHh
Q 002996 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAE--LVED---RGFLESLKDLISDN--NPMVVANAVAALAEIE 148 (860)
Q Consensus 79 ~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~---~p~--~~~~---~~~~~~l~~lL~D~--d~~V~~~al~~l~~i~ 148 (860)
.+.-.+.+.+++.+.++.+|..|+.++.|+-.. +|. .+.+ ..+++.+.++|.+. |+.+..+|+-+|.++.
T Consensus 328 ~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS 407 (810)
T 3now_A 328 CEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407 (810)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 233358899999999999999999999999642 222 2221 24577888999876 8999999999999997
Q ss_pred hcCCC-CchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCH----------------------------HHH---
Q 002996 149 ENSSR-PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----------------------------REA--- 196 (860)
Q Consensus 149 ~~~~~-~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~----------------------------~~~--- 196 (860)
..... ..+......++.|+..+...++=.|-..+.+|..+....+ +..
T Consensus 408 ~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r 487 (810)
T 3now_A 408 LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR 487 (810)
T ss_dssp TSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHH
Confidence 54211 1122335678888888877777777777777776654210 011
Q ss_pred -HH-----HHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHHh
Q 002996 197 -EN-----IVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQ 267 (860)
Q Consensus 197 -~~-----ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~~ 267 (860)
.. .+..+..++++.++.+.-+| .++..+ ..+.+....++. .+.++|+.+| +.++..|..|..+|..|+.
T Consensus 488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL--A~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~ 565 (810)
T 3now_A 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAV--CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI 565 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH--HTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence 11 34455677788888877666 333333 223443332322 3577899988 5678899999999999886
Q ss_pred h-Chhh-hhc-----cce-EEEeccCC-cHHHHHHHHHHHHHhcCc--ccHHHHHH-----HHHHhhhhccHHHHHHHHH
Q 002996 268 R-RPTI-LAH-----EIK-VFFCKYND-PIYVKMEKLEIMIKLASD--RNIDQVLL-----EFKEYATEVDVDFVRKAVR 331 (860)
Q Consensus 268 ~-~p~~-~~~-----~~~-~~~~l~~d-~~~Ik~~~L~lL~~l~~~--~Nv~~Iv~-----eL~~y~~~~d~~~~~~~i~ 331 (860)
. +|.. |.. -+. .+..+.++ +...+..++..|..|+.. ++...|++ .|.+++.+.+..+++.++.
T Consensus 566 ~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 4 4543 211 112 12234444 345567889999998864 45544444 5777777778888899999
Q ss_pred HHHHHHHhhhhhHH------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHH------HHHHHHHhhccCCchH
Q 002996 332 AIGRCAIKLERAAE------RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES------IIATLCESLDTLDEPE 399 (860)
Q Consensus 332 ~I~~la~k~~~~~~------~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~------~i~~L~~~l~~~~~~~ 399 (860)
+|+.++.. +.... ..+..|+.|+......+..++...+..+...+++..+. .++.|++.+.. .+++
T Consensus 646 ~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~ 723 (810)
T 3now_A 646 CLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPA 723 (810)
T ss_dssp HHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHH
T ss_pred HHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHH
Confidence 99888752 11111 24556777777666666667766777666544443332 34466666653 4566
Q ss_pred HHHHHHHHHhhccc
Q 002996 400 AKASMIWIIGEYAE 413 (860)
Q Consensus 400 ~~~~~~wilGEy~~ 413 (860)
.+..++|.++....
T Consensus 724 vq~~A~~aL~NL~~ 737 (810)
T 3now_A 724 VQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 77778888876543
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.08 E-value=1.6e-07 Score=109.18 Aligned_cols=337 Identities=15% Similarity=0.137 Sum_probs=216.5
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcC--CCCcHHHH----HHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhh
Q 002996 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKI 78 (860)
Q Consensus 8 s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~--~~~el~~L----~in~l~kDl~-~~n~~ir~lALr~l~~i~--~~e~ 78 (860)
.....++++.+.|+|.+.+.-+.-++..++. .+|-+-.+ ++..|.+-|. +.++.++..|.++|++|. +++-
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 3457889999999999988777777765542 33322111 3556777774 567999988888888874 3333
Q ss_pred HH-----HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCCh-----hHHHHHHHHHH
Q 002996 79 TE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALA 145 (860)
Q Consensus 79 ~~-----~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~D~d~-----~V~~~al~~l~ 145 (860)
.. -.++.+.+++.++++.||..|+.|+..|...+|+ .+.+.+.++.|..+|.+.+. .++.+++.++.
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 32 2468889999999999999999999999876654 33345678889999976543 35667777888
Q ss_pred HHhhcC-CCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-----HHHHHhhhhcCCChHHHHHH-
Q 002996 146 EIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSA- 218 (860)
Q Consensus 146 ~i~~~~-~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-----ll~~v~~~l~~~n~aVv~~a- 218 (860)
.++... +...+......+..|...+...++..+...+..|..+...+.+.... ++..+..+|.+.+..|...|
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 877653 23334445567778888888888888888888887766544433222 34567778888888877666
Q ss_pred HHHHHhhhccChHHHHHHH-HHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHH
Q 002996 219 MILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 296 (860)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~-~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~ 296 (860)
.++..+-. .+++....++ ..+.+.|..+| +.++++|.-+..+|..|+...+....
T Consensus 315 ~aL~nl~~-~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~---------------------- 371 (529)
T 3tpo_A 315 RAIGNIVT-GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ---------------------- 371 (529)
T ss_dssp HHHHHHTT-SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHH----------------------
T ss_pred HHHHHHHc-cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHH----------------------
Confidence 22222211 1222222222 23556777887 46788998888888888765442110
Q ss_pred HHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHhhhhhhHHHHHHHH
Q 002996 297 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIVI 370 (860)
Q Consensus 297 lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~------~~~v~~ll~ll~~~~~~v~~e~i~~l 370 (860)
.+ .+ . .++.-|...+.+.+.+++.+++.+|+.++....... .-++..|+++|......+...++..+
T Consensus 372 ~v---~~-~---g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL 444 (529)
T 3tpo_A 372 QV---VN-H---GLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 444 (529)
T ss_dssp HH---HH-T---THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HH---Hh-c---CcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00 01 1 245556666677788888888888888776432211 12355566666655555444444444
Q ss_pred HHHH
Q 002996 371 KDIF 374 (860)
Q Consensus 371 ~~i~ 374 (860)
..|+
T Consensus 445 ~nil 448 (529)
T 3tpo_A 445 SNIF 448 (529)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.08 E-value=4.5e-08 Score=116.61 Aligned_cols=410 Identities=12% Similarity=0.104 Sum_probs=258.9
Q ss_pred hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhc
Q 002996 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 75 ~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~ 150 (860)
..++..-.++.+.++|.+.++.||..|+.++.++....+.. +...+.++.|.++|.+ .++.+..+|+.+|..+...
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 33444556777888999999999999999999998765432 2223577888888875 4899999999999887654
Q ss_pred CCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH-----HHHHHHHhhhhcCCChHHHHHH-HHHHHh
Q 002996 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-----ENIVERVTPRLQHANCAVVLSA-MILQQM 224 (860)
Q Consensus 151 ~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~-----~~ll~~v~~~l~~~n~aVv~~a-~~~~~l 224 (860)
......-.....+..|+..|...++-.|...+..|..+...++... ...+..+...|++.++-+...+ -++..+
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 2100000112457788888888888889888888887765432111 2356677788888776543332 122222
Q ss_pred hhccChHHHHHHH-HHhhhHHHhhcCC--ChhHHHHHHHHHHHHHhhChh----hhhcc-ce-EEEeccCCcHHHHHHHH
Q 002996 225 ELITSTDVVRNLC-KKMAPPLVTLLSA--EPEIQYVALRNINLIVQRRPT----ILAHE-IK-VFFCKYNDPIYVKMEKL 295 (860)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~L~~lls~--~~niry~aL~~l~~l~~~~p~----~~~~~-~~-~~~~l~~d~~~Ik~~~L 295 (860)
.. .+++....+. ...++.|+.++.+ ...+++.++..|..++. ++. ++... +. .+..+.+++..+++.++
T Consensus 168 a~-~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~ 245 (644)
T 2z6h_A 168 AY-GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245 (644)
T ss_dssp HT-TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred Hh-cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 11 1233222222 1345678888843 35678888888877764 222 12111 11 22234566788999999
Q ss_pred HHHHHhcCc----ccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHHHhhh--hhhHH
Q 002996 296 EIMIKLASD----RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKV--NYVVQ 364 (860)
Q Consensus 296 ~lL~~l~~~----~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~-----~~v~~ll~ll~~~~--~~v~~ 364 (860)
.+|..++.. ..+..++..|...+.+.|.+.+..++.+++.++..-+.... ..++.|++++...+ ..+..
T Consensus 246 ~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~ 325 (644)
T 2z6h_A 246 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325 (644)
T ss_dssp HHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHH
Confidence 999999863 24567888888899888999999999999999875432222 25788999998755 46777
Q ss_pred HHHHHHHHHHHhCcc---cHH-----HHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC--------H-HHHHHHHHh
Q 002996 365 EAIIVIKDIFRRYPN---TYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN--------A-DELLESFLE 427 (860)
Q Consensus 365 e~i~~l~~i~~~~p~---~~~-----~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~--------~-~~~l~~~~~ 427 (860)
.++..+.++...+++ .+. .++..|.+.|.+-..+..+..++|.++..+..-.+ . +.+++.+-.
T Consensus 326 ~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 326 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc
Confidence 788888888765553 122 35677777776544567888899999987643221 1 222222221
Q ss_pred h----------------CCC--CcHHHHHHHHHHHHHHhhcCCCCChHH------HHHHHHHhcccCCCChHHHHHHHHH
Q 002996 428 S----------------FPE--EPAQVQLQLLTATVKLFLKKPTEGPQQ------MIQVVLNNATVETDNPDLRDRAYIY 483 (860)
Q Consensus 428 ~----------------~~~--e~~~v~~~iLta~~Kl~~~~p~~~~~~------~i~~~l~~~~~~s~~~evrdRA~~y 483 (860)
. +.. .+.+++..++.++..++.. +. .+. .+..+.++. .+.+.++|..|...
T Consensus 406 ~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~-~~--~~~~l~~~~~i~~Lv~lL--~~~~~~v~~~a~~a 480 (644)
T 2z6h_A 406 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VH--NRIVIRGLNTIPLFVQLL--YSPIENIQRVAAGV 480 (644)
T ss_dssp HHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS-HH--HHHHHHHTTCHHHHHHHT--TCSCHHHHHHHHHH
T ss_pred cchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC-HH--HHHHHHhCCcHHHHHHHH--cCCCHHHHHHHHHH
Confidence 1 111 3467777788888776532 21 111 234455543 35688999999876
Q ss_pred HHHhcCCH
Q 002996 484 WRLLSTDP 491 (860)
Q Consensus 484 ~~ll~~~~ 491 (860)
+.-+..++
T Consensus 481 L~~l~~~~ 488 (644)
T 2z6h_A 481 LCELAQDK 488 (644)
T ss_dssp HHHHHTSH
T ss_pred HHHHHcCH
Confidence 54444443
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.07 E-value=2e-07 Score=110.04 Aligned_cols=366 Identities=15% Similarity=0.170 Sum_probs=239.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhcCCChHHHHHHH
Q 002996 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAA 102 (860)
Q Consensus 25 ~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~v~~~l~d~~~~VRk~A~ 102 (860)
++|+.|+... .+.-+....-++ |=+.++|...|=++--+++.+. .+|++.-++..+++-+.|++|++|--|+
T Consensus 59 l~Kli~l~~~--G~d~s~~~~~vv----kl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lAL 132 (621)
T 2vgl_A 59 VCKLLFIFLL--GHDIDFGHMEAV----NLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLAL 132 (621)
T ss_dssp HHHHHHHHHH--SCCCCSCHHHHH----HGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCchhHHHHH----HHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6788888664 333344433333 3567888888766666666553 4777778889999999999999999999
Q ss_pred HHHHHHHhhcccccccccHHHHHHHhh--cCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHH
Q 002996 103 ICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180 (860)
Q Consensus 103 ~~l~kl~~~~p~~~~~~~~~~~l~~lL--~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~ 180 (860)
.++.++. .|+.++. +.+.+.++| .|.+|.|.-.|+.++..+....|.. ... ...+.+|.+.|.+.++-.+..
T Consensus 133 r~L~~i~--~~e~~~~--l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~-~~~-~~~~~~l~~lL~d~d~~V~~~ 206 (621)
T 2vgl_A 133 HCIANVG--SREMAEA--FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL-VPM-GDWTSRVVHLLNDQHLGVVTA 206 (621)
T ss_dssp HHHHHHC--CHHHHHH--HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG-CCC-CSCHHHHHHHTTCSCHHHHHH
T ss_pred HHhhccC--CHHHHHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh-cCc-hhHHHHHHHHhCCCCccHHHH
Confidence 9999984 5777764 888999999 9999999999999999988876532 110 134566777778889988888
Q ss_pred HHHHHHhccccCHHHHH----HHHHHHhhhhcC--C-----------ChHHHHHHHHHHHhhhccC---hHHHHHHHHHh
Q 002996 181 ILDALSRYKAADAREAE----NIVERVTPRLQH--A-----------NCAVVLSAMILQQMELITS---TDVVRNLCKKM 240 (860)
Q Consensus 181 il~~L~~~~~~~~~~~~----~ll~~v~~~l~~--~-----------n~aVv~~a~~~~~l~~~~~---~~~~~~~~~~~ 240 (860)
.+.+|....+.+++... .+++.+...+.. . ++- +.+.++..+..... ++....+
T Consensus 207 a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w--~qi~il~ll~~~~~~~d~~~~~~l---- 280 (621)
T 2vgl_A 207 ATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW--LSVKLLRLLQCYPPPEDPAVRGRL---- 280 (621)
T ss_dssp HHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHH--HHHHHHHHGGGSSSCSSHHHHHHH----
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCch--HHHHHHHHHHHhCCCCCHHHHHHH----
Confidence 88888887776665322 233333333321 1 332 22233444544432 2322222
Q ss_pred hhHHHhhc----C---------C--ChhHHHHHHHHHHHHHhhChhhhhccceEE-EeccCCcHHHHHHHHHHHHHhcCc
Q 002996 241 APPLVTLL----S---------A--EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASD 304 (860)
Q Consensus 241 ~~~L~~ll----s---------~--~~niry~aL~~l~~l~~~~p~~~~~~~~~~-~~l~~d~~~Ik~~~L~lL~~l~~~ 304 (860)
...|-+++ . + .+-+.|-+.+++..+. ..+.+...-...+ ..+.+.+..+|..+|+.|..++..
T Consensus 281 ~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 281 TECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASS 359 (621)
T ss_dssp HHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc
Confidence 22222222 1 1 2256666666666653 2344433222211 113466789999999999999876
Q ss_pred cc----HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcc
Q 002996 305 RN----IDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN 379 (860)
Q Consensus 305 ~N----v~~Iv~eL~~y~~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~ 379 (860)
.. +......+...+. +.|..+++.++..+..++.. ...+..+..+.+.+...+.....+++..|..+..++|.
T Consensus 360 ~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 360 EFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp TTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS
T ss_pred cCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 43 2333344445556 88899999988888777643 45678888899999888888888999999888889888
Q ss_pred cHHHHHHHHHHhhcc---CCchHHHHHHHHHHhhc
Q 002996 380 TYESIIATLCESLDT---LDEPEAKASMIWIIGEY 411 (860)
Q Consensus 380 ~~~~~i~~L~~~l~~---~~~~~~~~~~~wilGEy 411 (860)
..+..+..|.+.+.. .-..++...+.-++.+.
T Consensus 438 ~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 438 DYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp STHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence 888888888887742 11233444455566554
No 41
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.02 E-value=6.4e-08 Score=111.87 Aligned_cols=256 Identities=10% Similarity=0.130 Sum_probs=151.0
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhh--cc--cccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCchh
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDI--NA--ELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFE 157 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~--~p--~~~~~~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~~~~~~~ 157 (860)
++.+.+.+.+.++-++..|+.++.|+... +| +.+.+.+.++.|.++|. +.++.+...|..+|..|+...+.....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45667888999999999999999999864 34 23445689999999997 456899999999999997654322111
Q ss_pred c-cHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHH-----HHHHhhhhcCCCh-----HHHHHH-HHHHHhh
Q 002996 158 I-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANC-----AVVLSA-MILQQME 225 (860)
Q Consensus 158 ~-~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~l-----l~~v~~~l~~~n~-----aVv~~a-~~~~~l~ 225 (860)
+ -...+..|+..|...++-.+...+..|..+...+++-...+ +..+...+++.+. .+.-.+ ..+..+.
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 1 12357888888888899999999999988876554433332 3455566654332 222222 1222221
Q ss_pred hccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhh----hcc-ce-EEEeccCCcHHHHHHHHHHH
Q 002996 226 LITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL----AHE-IK-VFFCKYNDPIYVKMEKLEIM 298 (860)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~----~~~-~~-~~~~l~~d~~~Ik~~~L~lL 298 (860)
.-..+...-.....+.+.|.+++ +.+++++.-++.+|..|+...++.. ... +. .+.++.+++..++..++..|
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 11111100112234567788888 4678899989988888875443211 111 11 12234445556666666666
Q ss_pred HHhcCc--ccHHHHHH-----HHHHhhhhccHHHHHHHHHHHHHHHH
Q 002996 299 IKLASD--RNIDQVLL-----EFKEYATEVDVDFVRKAVRAIGRCAI 338 (860)
Q Consensus 299 ~~l~~~--~Nv~~Iv~-----eL~~y~~~~d~~~~~~~i~~I~~la~ 338 (860)
..++.. .+...+++ -|...+.+.+.++++.++.+++.++.
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 665432 22222222 12233344455555555555555543
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.97 E-value=1.9e-07 Score=108.42 Aligned_cols=221 Identities=10% Similarity=0.117 Sum_probs=135.0
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhc--c--cccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCch
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDIN--A--ELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIF 156 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~--p--~~~~~~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~~~~~~ 156 (860)
.++.+.+.+.+.++-++..|+.++.|+.... | +.+.+.+.++.|.++|. +.++.+...|+.+|..|+...+....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566788889999999999999999988543 3 23444688999999996 56689999999999999865432111
Q ss_pred -hccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHH-----HHHHhhhhcCCCh-----HHHHHH-HHHHHh
Q 002996 157 -EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANC-----AVVLSA-MILQQM 224 (860)
Q Consensus 157 -~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~l-----l~~v~~~l~~~n~-----aVv~~a-~~~~~l 224 (860)
-.....+..|+..|...++-.+...+..|..+...+++-...+ +..+..+|+..+. .+.-.+ ..+..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 1122457788888888888889889999988876555433333 3455566654322 122222 222222
Q ss_pred hhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhh----hcc-ce-EEEeccCCcHHHHHHHHHH
Q 002996 225 ELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL----AHE-IK-VFFCKYNDPIYVKMEKLEI 297 (860)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~----~~~-~~-~~~~l~~d~~~Ik~~~L~l 297 (860)
..-..+.........+.+.|..++ +.+++++.-++.+|..++...++.. ... +. .+.++.+++..++..++..
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a 316 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence 111111111112234577788888 5788899999999988876443211 110 11 1122334445555555555
Q ss_pred HHHhc
Q 002996 298 MIKLA 302 (860)
Q Consensus 298 L~~l~ 302 (860)
|..++
T Consensus 317 L~nl~ 321 (529)
T 3tpo_A 317 IGNIV 321 (529)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55554
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.95 E-value=5e-08 Score=103.21 Aligned_cols=186 Identities=19% Similarity=0.136 Sum_probs=134.3
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHHHHHHHHH-h
Q 002996 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYLCDPLQ-R 88 (860)
Q Consensus 11 f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-~~e~~~~l~~~v~-~ 88 (860)
....++++.+++...|..+--.+..+.. + -++..+.+-+.|+++.+|..|+.+|+.++ .++..+.+++.+. .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~----~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--Q----DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--H----HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--c----hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 4567788888999988888777777752 2 25678888899999999999999999998 4455566666666 4
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHH
Q 002996 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (860)
Q Consensus 89 ~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~ 168 (860)
++.|+++.||..|+.++.++...+|...+ ..++.+..+|.|.|+.|...|+.+|..+.... .+..|+.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~--~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~----------~~~~L~~ 166 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSP--KIVEQSQITAFDKSTNVRRATAFAISVINDKA----------TIPLLIN 166 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHTTCSCHHHHHHHHHHHHTC---C----------CHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccH--HHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH----------HHHHHHH
Confidence 67899999999999999999876654433 47888999999999999999999888764321 2455556
Q ss_pred HhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH
Q 002996 169 ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 169 ~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a 218 (860)
.+.+.+++.+...+..|..+...++ ..+..+...+++.++.|..+|
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A 212 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEA 212 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHH
Confidence 6667777766666666666543332 233444455555566665555
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.93 E-value=8.6e-08 Score=108.74 Aligned_cols=394 Identities=12% Similarity=0.106 Sum_probs=233.2
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCC-CCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---------------
Q 002996 11 FTDVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--------------- 74 (860)
Q Consensus 11 f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~-~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~--------------- 74 (860)
+.+++..+.+.|-..|+-+--++..+... .|+........+.. .+.++.+|-+|...|.+..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 34566677788999999999998886654 35544334444442 3457899988887766542
Q ss_pred ---hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhc-cc-ccccccHHHHHHHhhcCC--ChhHHHHHHHHHHHH
Q 002996 75 ---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN--NPMVVANAVAALAEI 147 (860)
Q Consensus 75 ---~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~-p~-~~~~~~~~~~l~~lL~D~--d~~V~~~al~~l~~i 147 (860)
.++..+.+-..+.+.+.+.++.| ++++.++..+.+.. |+ ..+ ++++.|...+.+. |+.+...|+.+|..+
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~--~ll~~L~~~l~~~~~~~~~r~~al~~l~~l 157 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 23445566677788889999999 99999999999874 53 333 4888889999888 999999999999999
Q ss_pred hhcCCCC-chhccHHHHHHHHHHhccC--ChhHHHHHHHHHHhccccCH-----H-HHHHHHHHHhhhhcCCChHHHHHH
Q 002996 148 EENSSRP-IFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAADA-----R-EAENIVERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 148 ~~~~~~~-~~~~~~~~~~~Ll~~l~~~--~~w~q~~il~~L~~~~~~~~-----~-~~~~ll~~v~~~l~~~n~aVv~~a 218 (860)
.+...+. .-......+..++..+.+. ++=.+...++.+..+...-. . ....++..+...+.+.+..|...+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~ 237 (462)
T 1ibr_B 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (462)
T ss_dssp HHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8754222 2233345566677777766 45566667777765322111 1 112346666666666677665544
Q ss_pred -HHHHHhhhccChHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhh--hhccceEEEeccCCc------
Q 002996 219 -MILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTI--LAHEIKVFFCKYNDP------ 287 (860)
Q Consensus 219 -~~~~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~--~~~~~~~~~~l~~d~------ 287 (860)
.++..+... .++.....+. .+.+.+...+ ..++++|..+++.+..++...... +.... .....+
T Consensus 238 ~~~l~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 312 (462)
T 1ibr_B 238 LQNLVKIMSL-YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA----AEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHH-CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCT----TCSSSCSSCCCC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccc----cccCCCccchhH
Confidence 122111110 1111111111 2333444444 567899999999888877542111 00000 000000
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh-------ccHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhh
Q 002996 288 IYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE-------VDVDFVRKAVRAIGRCAIKLER-AAERCISVLLELIKIKV 359 (860)
Q Consensus 288 ~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~-------~d~~~~~~~i~~I~~la~k~~~-~~~~~v~~ll~ll~~~~ 359 (860)
..++ ..+..++..|.+.+.+ .+...++.+...++.++..++. .....+..+...+....
T Consensus 313 ~~~~-------------~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~ 379 (462)
T 1ibr_B 313 FYAK-------------GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPD 379 (462)
T ss_dssp CHHH-------------HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSS
T ss_pred HHHH-------------HHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCC
Confidence 0011 0123344444444432 1234566666666666665543 23455666666666555
Q ss_pred hhhHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-------CHHHHHHHHHh
Q 002996 360 NYVVQEAIIVIKDIFRRYP-----NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------NADELLESFLE 427 (860)
Q Consensus 360 ~~v~~e~i~~l~~i~~~~p-----~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-------~~~~~l~~~~~ 427 (860)
..+...++..+..+..... .....++..+...+.+ .++.++.+++|.+|.|++... .-+.++..++.
T Consensus 380 ~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 5556666666666654321 1224578888888876 468899999999999987542 24567777665
Q ss_pred h
Q 002996 428 S 428 (860)
Q Consensus 428 ~ 428 (860)
.
T Consensus 459 ~ 459 (462)
T 1ibr_B 459 G 459 (462)
T ss_dssp C
T ss_pred H
Confidence 4
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.92 E-value=3e-08 Score=100.18 Aligned_cols=186 Identities=23% Similarity=0.268 Sum_probs=139.0
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH
Q 002996 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~ 126 (860)
.+..|.+.|.|+++.+|..|++.|+.++.++.++. +.+++.|+++.||..|+.++.++-. + ..++.|.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~aL~~~~~--~------~~~~~L~ 87 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIGD--E------RAVEPLI 87 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSCHHHHHHHHHHHHHHCC--G------GGHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHH----HHHHHcCCCHHHHHHHHHHHHhhCC--H------HHHHHHH
Confidence 35778888999999999999999999998766554 5678889999999999999998742 2 3678888
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Q 002996 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (860)
Q Consensus 127 ~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~ 206 (860)
++|.|.|+.|...|+.+|..+... ..+..|+..+.+.+++.+...++.|..+... ..+..+...
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~ 151 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKA 151 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------HHHHHHHHH
Confidence 999999999999999999888432 2356777788889999999999999887542 244556677
Q ss_pred hcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhCh
Q 002996 207 LQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP 270 (860)
Q Consensus 207 l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p 270 (860)
+++.++.|...| ..++..+..++ +.+.|..++ +.++.+|..+.+.|..+....+
T Consensus 152 l~d~~~~vr~~a--~~aL~~~~~~~--------~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 152 LKDEDGWVRQSA--ADALGEIGGER--------VRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp TTCSSHHHHHHH--HHHHHHHCSHH--------HHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HcCCCHHHHHHH--HHHHHHhCchh--------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 788888888777 23344444433 234456666 4788999999999988876543
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.87 E-value=7.2e-08 Score=96.51 Aligned_cols=183 Identities=23% Similarity=0.293 Sum_probs=131.9
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHH
Q 002996 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (860)
Q Consensus 46 L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l 125 (860)
-....+.+.|.|+|+.+|..|++.|+.++.++.++ .+.+++.|+++.||+.|+.++.++-. + ..++.|
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~~L~~~~~--~------~~~~~L 81 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIGD--E------RAVEPL 81 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHH----HHHHHHcCCCHHHHHHHHHHHHhhCC--H------HHHHHH
Confidence 34577888899999999999999999888765544 45677788999999999998887632 2 356788
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhh
Q 002996 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (860)
Q Consensus 126 ~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~ 205 (860)
.++|.|.|+.|...|+.+|..+... ..+..|+..+.+.+++.+...++.|..+... ..+..+..
T Consensus 82 ~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~ 145 (201)
T 3ltj_A 82 IKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIK 145 (201)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------GGHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------HHHHHHHH
Confidence 8889999999999998888887432 2356667777788888888888888877532 23455566
Q ss_pred hhcCCChHHHHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHH
Q 002996 206 RLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIV 266 (860)
Q Consensus 206 ~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~ 266 (860)
.+++.++.|...| ..++..+..++ ..+.|..++ +.++.+|..+...|.++-
T Consensus 146 ~l~d~~~~vr~~A--~~aL~~~~~~~--------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 146 ALKDEDGWVRQSA--ADALGEIGGER--------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HTTCSSHHHHHHH--HHHHHHHCSHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHH--HHHHHHhCchh--------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 7777788887776 23343333333 233455666 467888888888887653
No 47
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.80 E-value=3e-07 Score=95.00 Aligned_cols=223 Identities=22% Similarity=0.181 Sum_probs=162.6
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHH-----HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---cc
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~-----~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~~ 117 (860)
+..|.+-|+++++.+|..|+++|+++. .++... ..++.+.+++.+.++.||..|+.++..+...+++. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 567788888999999999999998874 222222 36788899999999999999999999998765543 22
Q ss_pred cccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchh-ccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH
Q 002996 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (860)
Q Consensus 118 ~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~-~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~ 196 (860)
+.+.++.+..+|.+.++.|..+|+.+|..++...+...-. .....+..|++.+.+.++..+...+.+|..+...++...
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3468899999999999999999999999998543221111 112357788888888899999999999998877655433
Q ss_pred H-----HHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHHhh
Q 002996 197 E-----NIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQR 268 (860)
Q Consensus 197 ~-----~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~~~ 268 (860)
. ..+..+...+++.++.+...| .++..+-. .+++....+.. .+.+.|..++ +.++++|..++..|..|...
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 2 256677788888888887776 33333321 13333333222 3456788887 57889999999999999987
Q ss_pred Chh
Q 002996 269 RPT 271 (860)
Q Consensus 269 ~p~ 271 (860)
.+.
T Consensus 243 ~~~ 245 (252)
T 4hxt_A 243 GWL 245 (252)
T ss_dssp CBC
T ss_pred CCc
Confidence 654
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.72 E-value=3.9e-07 Score=91.14 Aligned_cols=177 Identities=21% Similarity=0.294 Sum_probs=141.3
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHH
Q 002996 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (860)
Q Consensus 8 s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~ 87 (860)
...+..+++++.+++...|+.+--.+..+... + ++..+.+-|.|+++.+|..|+++|+.++.++.++. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~----L~ 82 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--R----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 82 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--h----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 34678899999999999999988888877642 2 35677778889999999999999999998766554 56
Q ss_pred hhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHH
Q 002996 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (860)
Q Consensus 88 ~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll 167 (860)
+++.|+++.||..|+.++.++-. | ..++.|.++|.|.|+.|...|+.+|..+... ..+..|+
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 144 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGD--E------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 144 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----------HHHHHHH
Confidence 78899999999999999998742 2 3678888999999999999999999888532 2466777
Q ss_pred HHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH
Q 002996 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 168 ~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a 218 (860)
..+.+.+++.+...++.|..+.. + ..+..+...+++.++.|...|
T Consensus 145 ~~l~d~~~~vr~~A~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~A 189 (201)
T 3ltj_A 145 KALKDEDGWVRQSAADALGEIGG--E----RVRAAMEKLAETGTGFARKVA 189 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCS--H----HHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--h----hHHHHHHHHHhCCCHHHHHHH
Confidence 88888999999999999998853 2 344555566667777777666
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.71 E-value=4.7e-07 Score=91.25 Aligned_cols=177 Identities=22% Similarity=0.299 Sum_probs=141.6
Q ss_pred ccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHH
Q 002996 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (860)
Q Consensus 8 s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~ 87 (860)
...+..+++++.+++...|+.+--.+..+.. ++ ++..|.+-+.|+++.+|..|+++|+.++.++.++. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~----L~ 87 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 87 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--cc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 4557788889999999999888888877754 22 35677788889999999999999999998776654 56
Q ss_pred hhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHH
Q 002996 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (860)
Q Consensus 88 ~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll 167 (860)
+++.|+++.||..|+.++.++-. + ..++.|.++|.|.|+.|...|+.+|..+... ..+..|+
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 149 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGD--E------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 149 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----------HHHHHHH
Confidence 78899999999999999998742 2 3678899999999999999999999988432 2356677
Q ss_pred HHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH
Q 002996 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 168 ~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a 218 (860)
..+.+.+++.+...++.|..+.. ...+..+...+++.++.|...|
T Consensus 150 ~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A 194 (211)
T 3ltm_A 150 KALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVA 194 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHH
Confidence 77889999999999999998853 2345555666777788887776
No 50
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.68 E-value=6.4e-07 Score=96.88 Aligned_cols=275 Identities=16% Similarity=0.122 Sum_probs=132.5
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhcc
Q 002996 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (860)
Q Consensus 80 ~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~ 159 (860)
-.+...|.+++.+++..+||-..+++--+.+. |+.+- -..+.+.+=++|+|+.+.+.|+.+|..|.... +.
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~------m~ 137 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDST------ML 137 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT------TH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH------HH
Confidence 35666777777777777777777777544444 33332 14566666666777777777777777774321 23
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHH
Q 002996 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCK 238 (860)
Q Consensus 160 ~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~ 238 (860)
....+.+-+.|.+.+|+..-..+=...++.+.+++-.+.+++.+...+..+|++|+++| .++..+.. .+ +....
T Consensus 138 ~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~---~d--~~a~~ 212 (355)
T 3tjz_B 138 QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK---ND--RLAVS 212 (355)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT---TC--HHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh---hc--hHHHH
Confidence 34455555666677777665555445555566666666777777788888899998888 33333321 11 11222
Q ss_pred HhhhHHHhhcCCChhHHHHHHHHHHHHHhhC-hhhhhccce-EEEeccCCcHHHHHHHHHHHHHhcCccc--HHHHHHHH
Q 002996 239 KMAPPLVTLLSAEPEIQYVALRNINLIVQRR-PTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRN--IDQVLLEF 314 (860)
Q Consensus 239 ~~~~~L~~lls~~~niry~aL~~l~~l~~~~-p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~N--v~~Iv~eL 314 (860)
++++.+..-.-.++-.+...++.+.++...+ |..-.+.+. +..++.+....|-..+...+..+.+... ....+.-|
T Consensus 213 kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L 292 (355)
T 3tjz_B 213 KMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVL 292 (355)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-----------CCCTH
T ss_pred HHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 2222222211113444444455555555555 443333444 3345677778888888888888755211 11233444
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHH
Q 002996 315 KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAII 368 (860)
Q Consensus 315 ~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~ 368 (860)
..++.+.|.+++-.+++.|..++.++|..-..|-..+.+++++.+..+..-++.
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC-----------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHH
Confidence 566777788888888888888888888887788888888888776555444443
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.65 E-value=2.9e-07 Score=95.38 Aligned_cols=213 Identities=18% Similarity=0.182 Sum_probs=159.9
Q ss_pred CcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHH--HH---HHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhh
Q 002996 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA--IL---AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKI 78 (860)
Q Consensus 6 d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~--~L---~in~l~kDl~~~n~~ir~lALr~l~~i~~--~e~ 78 (860)
+-...|...++++.++|.+.++-+--.+..++..+++.. +. ++..|.+-|+++++.+|..|+++|+++.. ++.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 445679999999999999999888888865444332211 11 45778888999999999999999999874 443
Q ss_pred HHH-----HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 79 TEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 79 ~~~-----l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
.+. .++.+.+++.+.++.||+.|+.++..+....+.. +.+.+.++.|.++|.+.++.|...|+.+|..+...
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 332 5788999999999999999999999998755432 33457889999999999999999999999999865
Q ss_pred CCCCchh-ccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-----HHHHHhhhhcCCChHHHHHH
Q 002996 151 SSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 151 ~~~~~~~-~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-----ll~~v~~~l~~~n~aVv~~a 218 (860)
.+...-. .....+..|++.+.+.++..+...+.+|..+...+++.... .+..+...+++.++.|..+|
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence 3221111 11234678888888889999999999999887666544433 34556677777777766655
No 52
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.62 E-value=1.3e-06 Score=90.14 Aligned_cols=209 Identities=21% Similarity=0.170 Sum_probs=159.7
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhHH--
Q 002996 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITE-- 80 (860)
Q Consensus 10 ~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L-----~in~l~kDl~~~n~~ir~lALr~l~~i~~--~e~~~-- 80 (860)
..+.+++++.+++...++-+-..+..++..+++.... ++..+.+-|+++++.+|..|+++|+++.. ++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3567888999999999999999999998877643222 46778899999999999999999999874 34333
Q ss_pred ---HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 81 ---YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 81 ---~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
..++.+.+++.+.++.||..|+.++..+...+++.. .+.+.++.|.++|.+.++.|...|+.+|..+....+..
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 357888999999999999999999999997665432 23468899999999999999999999999997653221
Q ss_pred c-hhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-----HHHHHhhhhcCCChHHHHHH
Q 002996 155 I-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 155 ~-~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-----ll~~v~~~l~~~n~aVv~~a 218 (860)
. .-.....+..|+..+.+.++..+...+.+|..+...+++.... .+..+...+++.++.+...|
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 232 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEA 232 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHH
Confidence 1 1111346778888888888999999999999887655543333 34566667777777665555
No 53
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.56 E-value=6e-07 Score=93.02 Aligned_cols=218 Identities=17% Similarity=0.138 Sum_probs=151.7
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhH-----HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---cc
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV--DKIT-----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~~--~e~~-----~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~~ 117 (860)
.+.+.+.|.++|+.+|..|+++|+++-. ++.. ...++.+.++|.+.++.||..|+.++..+...+++. +.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4778899999999999999999876432 2222 235688899999999999999999999998755543 22
Q ss_pred cccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-chhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHH
Q 002996 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (860)
Q Consensus 118 ~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~ 196 (860)
+.+.++.|..+|.+.++.|...|+.+|..+....... ..-.....+..|++.+.+.++-.+...+..|..+...+++..
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 3468899999999999999999999999997654221 011122357788888888888889999999998886665443
Q ss_pred HH-----HHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHH
Q 002996 197 EN-----IVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIV 266 (860)
Q Consensus 197 ~~-----ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~ 266 (860)
.. .+..+...+++.++.|...| .++..+-. .+++....+.. .+.+.|..++ +.++++|..++..|..|+
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 33 35567777888887777666 22222211 13333333322 2455666766 456777777777776554
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.56 E-value=8e-07 Score=89.32 Aligned_cols=185 Identities=18% Similarity=0.149 Sum_probs=134.1
Q ss_pred CCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCCHHHHhHHHHHhcCCC--hh
Q 002996 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIR--VD 76 (860)
Q Consensus 4 G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L-----~in~l~kDl~~~n~~ir~lALr~l~~i~--~~ 76 (860)
|++-...++-+++++.++|...+.-+..++..++..+++.... ++..|.+-|.++++.+|..|+++|+++. .+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 5677778888999999999999999999999998777654222 4677888899999999999999999986 34
Q ss_pred hhHHH-----HHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 77 KITEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 77 e~~~~-----l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
+..+. .++.+.++|.+.++.||+.|+.++..+...+++.. .+.+.++.|.++|.+.++.|...|+.+|..++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 43333 46889999999999999999999999987666542 24578999999999999999999999999998
Q ss_pred hcCCCCchhc-cHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 002996 149 ENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRY 188 (860)
Q Consensus 149 ~~~~~~~~~~-~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~ 188 (860)
...+.....+ ....+..|++.+.+.++-.+...+.+|..+
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 6532111000 112344555555555555555555555443
No 55
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.45 E-value=1.5e-06 Score=85.68 Aligned_cols=191 Identities=14% Similarity=0.129 Sum_probs=139.7
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-chhccHHHHHHHHHHhccCChhHHHHHHHHHHhcc---ccCHHHH
Q 002996 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AADAREA 196 (860)
Q Consensus 121 ~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~---~~~~~~~ 196 (860)
.+..|..+|.|+|+.|+.+|+.++.++.+..++. ........+..+++.+.+.++=.-++.+++|..+. |-+++..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5678899999999999999999999998874432 23344566777777788889998888888888764 5567788
Q ss_pred HHHHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhC--hhh
Q 002996 197 ENIVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR--PTI 272 (860)
Q Consensus 197 ~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~--p~~ 272 (860)
.++.+.+...+.+.|.....+| -.+.-+.. .++ .+++...+.+|+ |+++.+|-+||+.+..|+.+. |++
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgklkv-~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKLQP-LED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB-SCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcCCc-ccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence 8999999999998888877776 23333321 111 123455677777 679999999999999999865 445
Q ss_pred hhccce-EEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhh
Q 002996 273 LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA 318 (860)
Q Consensus 273 ~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~ 318 (860)
+..-.. +=+.+.++|++++.+||++|..+.+..=.+.++.++..-+
T Consensus 187 ~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~ 233 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKIS 233 (265)
T ss_dssp GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHH
Confidence 443322 2234678899999999999999988654455555554433
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.45 E-value=6e-06 Score=85.17 Aligned_cols=196 Identities=17% Similarity=0.211 Sum_probs=139.8
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc--ccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCc
Q 002996 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPI 155 (860)
Q Consensus 79 ~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~--~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~~~~~ 155 (860)
...+-+.+.+.+.|+++.+|+.|+.++.++...+|+.... .++.+.+..+|. |.|+.|+..|+.++..++..-+...
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344455778889999999999999999999886654321 247788888994 9999999999999999987643333
Q ss_pred hhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH--HHHHHhhhccChH-H
Q 002996 156 FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA--MILQQMELITSTD-V 232 (860)
Q Consensus 156 ~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a--~~~~~l~~~~~~~-~ 232 (860)
.......+..|+..+.+.++-.+......|..+..... ...+++.+...+++.|+.|..++ .+-..+... .++ .
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~-~~~~~ 169 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRT-QPTAL 169 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-CGGGC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc-CCCCc
Confidence 34455677888888888888777667666665543321 35688888889999999888877 222223222 122 1
Q ss_pred HHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhCh-hhhhccc
Q 002996 233 VRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHEI 277 (860)
Q Consensus 233 ~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p-~~~~~~~ 277 (860)
....+..+.+.|..+++ +++++|-.+..++..+...-+ ..+.+++
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 22334567788888885 789999999999999887644 3465554
No 57
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.43 E-value=0.00059 Score=84.93 Aligned_cols=407 Identities=9% Similarity=0.044 Sum_probs=217.3
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC-------------ChhhhH
Q 002996 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI-------------RVDKIT 79 (860)
Q Consensus 13 ~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i-------------~~~e~~ 79 (860)
+++....+.|-..| +--++..+ +.+|+......+.+... +.++.+|-+|.-.+-+. -.++--
T Consensus 9 ~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~~--~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k 83 (960)
T 1wa5_C 9 KFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAST--NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (960)
T ss_dssp HHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred HHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHH
Confidence 34444445555555 77777666 56788666666666532 34678888887666542 123444
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc
Q 002996 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (860)
Q Consensus 80 ~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~ 158 (860)
+.+-..+.+++.+.++.||++++.++.++.+. .|+.-+ ++++.|..++.+.|+..+.+++.++.+|.+..... +.-
T Consensus 84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp--~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~-~~~ 160 (960)
T 1wa5_C 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPL-FRS 160 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTS-CCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchh--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh-hcC
Confidence 55555666666677799999999999999986 464443 37788888888888888889999999998753210 000
Q ss_pred --cHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCC--Ch-HH--HHHH-----HHHHHhhh
Q 002996 159 --TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHA--NC-AV--VLSA-----MILQQMEL 226 (860)
Q Consensus 159 --~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~--n~-aV--v~~a-----~~~~~l~~ 226 (860)
....+..++... .-.+++++. .+...++.. +. .+ .+++ .++..+..
T Consensus 161 ~~~~~~l~~~l~~~-------~~~ll~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~ 218 (960)
T 1wa5_C 161 DELFLEIKLVLDVF-------TAPFLNLLK---------------TVDEQITANENNKASLNILFDVLLVLIKLYYDFNC 218 (960)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHH---------------HHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHH---------------HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000111111110 001111111 111111110 00 00 0111 11111111
Q ss_pred ccChHHHHHHHHHhhhHHHhhcC-------CC---------hhHHHHHHHHHHHHHhhChhhhhccceEEE-----ec--
Q 002996 227 ITSTDVVRNLCKKMAPPLVTLLS-------AE---------PEIQYVALRNINLIVQRRPTILAHEIKVFF-----CK-- 283 (860)
Q Consensus 227 ~~~~~~~~~~~~~~~~~L~~lls-------~~---------~niry~aL~~l~~l~~~~p~~~~~~~~~~~-----~l-- 283 (860)
...++.....+....+.+..++. .+ ..+|--+++.+..+..++++.|.+|+..|. .+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~ 298 (960)
T 1wa5_C 219 QDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS 298 (960)
T ss_dssp SCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122211111122222333331 11 135667788888888888887766543110 01
Q ss_pred ---cCCcHHHHHHHHHHHHHhcCccc----------HHHHH-HHHHHhhh----h-----cc--------------HHHH
Q 002996 284 ---YNDPIYVKMEKLEIMIKLASDRN----------IDQVL-LEFKEYAT----E-----VD--------------VDFV 326 (860)
Q Consensus 284 ---~~d~~~Ik~~~L~lL~~l~~~~N----------v~~Iv-~eL~~y~~----~-----~d--------------~~~~ 326 (860)
...+..++..+++.+..++.... +..++ .-+..++. + .| ...|
T Consensus 299 ~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R 378 (960)
T 1wa5_C 299 ISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRR 378 (960)
T ss_dssp CCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHH
T ss_pred cCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcH
Confidence 13446789999999998875432 33344 22223332 1 01 1245
Q ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHh-----hhhh-hHHHHHHHHHHHHHhC-----c--------ccHHHHHH
Q 002996 327 RKAVRAIGRCAIKLER-AAERCISVLLELIKI-----KVNY-VVQEAIIVIKDIFRRY-----P--------NTYESIIA 386 (860)
Q Consensus 327 ~~~i~~I~~la~k~~~-~~~~~v~~ll~ll~~-----~~~~-v~~e~i~~l~~i~~~~-----p--------~~~~~~i~ 386 (860)
..+...+..++..++. .....+..+.+.+.. ..+. ..+.++..+..+..+- + ++......
T Consensus 379 ~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~ 458 (960)
T 1wa5_C 379 RACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK 458 (960)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH
Confidence 5566677778877763 222333444444442 1122 2333444555554221 1 22222233
Q ss_pred HHHHhhccC--CchHHHHHHHHHHhhcccccCC--HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhh
Q 002996 387 TLCESLDTL--DEPEAKASMIWIIGEYAERIDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFL 449 (860)
Q Consensus 387 ~L~~~l~~~--~~~~~~~~~~wilGEy~~~i~~--~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~ 449 (860)
.+...+.+- .+|..+.+++|++|.|++.+.. -..++..+++.+.+.+..||.....|+..+..
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 344444442 2778899999999999987731 23456667778888889999999999999875
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.34 E-value=4.1e-05 Score=86.85 Aligned_cols=125 Identities=17% Similarity=0.126 Sum_probs=84.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhc-
Q 002996 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI- 158 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~- 158 (860)
++.+.++|.+.++.+|..|+.++.++...+++ .+.+.+.++.|.++|.+.++.+...|+.+|..+...++.....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45677888889999999999999998765554 33446789999999999999999999999999986432211111
Q ss_pred cHHHHHHHHHHhc-cCChhHHHHHHHHHHhccccC--HHH-HHHHHHHHhhhh
Q 002996 159 TSHTLSKLLTALN-ECTEWGQVFILDALSRYKAAD--ARE-AENIVERVTPRL 207 (860)
Q Consensus 159 ~~~~~~~Ll~~l~-~~~~w~q~~il~~L~~~~~~~--~~~-~~~ll~~v~~~l 207 (860)
-...+..|++.|. ..++-.+......|..+...+ ... ....+..+..+|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 1234677777777 556666766666666554321 111 123445555556
No 59
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.26 E-value=1.5e-05 Score=79.77 Aligned_cols=186 Identities=18% Similarity=0.152 Sum_probs=127.7
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCch
Q 002996 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (860)
Q Consensus 80 ~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~ 156 (860)
+...+.+.+++.+.++.||..|+.++..+...+++.. .+.+.++.|.++|.+.|+.|...|+.+|..+...++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 4556778999999999999999999999987665432 2346889999999999999999999999999754322111
Q ss_pred hc-cHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-----HHHHHhhhhcCCChHHHHHH-HHHHHhhhccC
Q 002996 157 EI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSA-MILQQMELITS 229 (860)
Q Consensus 157 ~~-~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-----ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~ 229 (860)
.+ ....+..|+..|.+.++-.+...+..|..+...+++.... .+..+...+++.++.+...| ..+..+-. .+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~-~~ 169 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GG 169 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SC
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CC
Confidence 11 1234678888888889889999999999887665544333 45677778888787777666 22332311 11
Q ss_pred hHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHH
Q 002996 230 TDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIV 266 (860)
Q Consensus 230 ~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~ 266 (860)
++....+.. ...+.|..++ +.++++|..++..|..|+
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 332222222 2455677777 467788888888887764
No 60
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.5e-05 Score=82.46 Aligned_cols=207 Identities=14% Similarity=0.183 Sum_probs=140.2
Q ss_pred HHHhhhcCCChHHHHHHHHHHHH-HHhhccccc--cc--ccHHHHHHHhh-cCCChhHHHHHHHHHHHHhhcCC-CCch-
Q 002996 85 PLQRCLKDDDPYVRKTAAICVAK-LYDINAELV--ED--RGFLESLKDLI-SDNNPMVVANAVAALAEIEENSS-RPIF- 156 (860)
Q Consensus 85 ~v~~~l~d~~~~VRk~A~~~l~k-l~~~~p~~~--~~--~~~~~~l~~lL-~D~d~~V~~~al~~l~~i~~~~~-~~~~- 156 (860)
...+.+.++++.-||.|+.++.. +..-+|++. .. .++++.|.+.+ +|.|+.|+..|+.++..++..-. +..-
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667789999999999999999 987777766 21 25677888889 79999999999999999987654 3332
Q ss_pred hccHHHHHHHHHHhccCChhHHHHHHHHH---Hhcc-ccCHH-HHHHHHHHHhhhhcCCChHHHHHH--HHHHHhhhccC
Q 002996 157 EITSHTLSKLLTALNECTEWGQVFILDAL---SRYK-AADAR-EAENIVERVTPRLQHANCAVVLSA--MILQQMELITS 229 (860)
Q Consensus 157 ~~~~~~~~~Ll~~l~~~~~w~q~~il~~L---~~~~-~~~~~-~~~~ll~~v~~~l~~~n~aVv~~a--~~~~~l~~~~~ 229 (860)
......+..++..+.+..+=.+-.+-..| .... +.... ....+++.+...|+|.|+.|..++ .+..++.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 35556778888888876654433333333 2222 11110 144688888899999999888877 33334433222
Q ss_pred -hHHHHHHH-HHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhChh-hhhccceEEEeccCCcHHHHHHHHHHH
Q 002996 230 -TDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT-ILAHEIKVFFCKYNDPIYVKMEKLEIM 298 (860)
Q Consensus 230 -~~~~~~~~-~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p~-~~~~~~~~~~~l~~d~~~Ik~~~L~lL 298 (860)
++.....+ ..+.+.|..++. +++++|-.+..++..+...-.+ .+.+|+..+ ..+|+.++.-.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L-------d~~k~~ki~~~ 245 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL-------DNLKRKKIEET 245 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS-------CHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH-------hHHHHHHHHHH
Confidence 13333345 567788888884 7899999999999998865432 455554322 23667766544
No 61
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.21 E-value=0.00013 Score=68.90 Aligned_cols=208 Identities=15% Similarity=0.193 Sum_probs=146.4
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccC--ChhHHHHHHHHHHhccccCHHHHH
Q 002996 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAADAREAE 197 (860)
Q Consensus 120 ~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~--~~w~q~~il~~L~~~~~~~~~~~~ 197 (860)
.+++.+..+|+|.=-.|+.||+.++..|....+ ++..+.+.+|+..+... -|.. ..|-+.+.......|+...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIplt-qeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLT-QEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchH-HHHHHHHhHHHHhCHHHHH
Confidence 478888999988888999999999999987654 45567788888776543 2322 2344555555555666666
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHhhhc--cChHHHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhh
Q 002996 198 NIVERVTPRLQHANCAVVLSAMILQQMELI--TSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILA 274 (860)
Q Consensus 198 ~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~--~~~~~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~ 274 (860)
.++..+....+-.++-+..+- -+.++.+ .+|+.... ++.-+..++ |++..-|.++|+-|.-+...++..+.
T Consensus 107 ~vVp~lfanyrigd~kikIn~--~yaLeeIaranP~l~~~----v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~ 180 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINV--SYALEEIAKANPMLMAS----IVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN 180 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHH--HHHHHHHHHHCHHHHHH----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG
T ss_pred hhHHHHHHHHhcCCccceecH--HHHHHHHHHhChHHHHH----HHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC
Confidence 777666666665566433332 1112211 14554444 344566777 46777899999999999888898888
Q ss_pred ccce-EEEeccCCcHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 002996 275 HEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR-NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAI 338 (860)
Q Consensus 275 ~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~-Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~ 338 (860)
+++. .|-.++|+|.-+|.-+.+.|..++..+ -+..++...++-+.+.+..+..++..++++++.
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9887 555688889999999999999987533 267777777777787777788888888887764
No 62
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.20 E-value=0.00082 Score=83.63 Aligned_cols=457 Identities=12% Similarity=0.104 Sum_probs=215.9
Q ss_pred HHhHh-ccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhHHHHHH
Q 002996 13 DVVNC-MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLCD 84 (860)
Q Consensus 13 ~vi~l-~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-------~~e~~~~l~~ 84 (860)
+++.. ..+.|-..|+-+.-++..+- .+|+-...+..-+. .+.++.+|-.|+.+|-+.. .++-.+.+-.
T Consensus 28 ~~l~~l~~~~~~~~r~~A~~~L~~~~-~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~ 103 (963)
T 2x19_B 28 KALHQLYYDPNIENKNLAQKWLMQAQ-VSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA 103 (963)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHH-HSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH
Confidence 44443 55678889999999888754 45664333333333 3678999999988887531 1222333333
Q ss_pred HHHhhhcC---CChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcC-----CChhHHHHHHHHHHHHhhcC--C-
Q 002996 85 PLQRCLKD---DDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISD-----NNPMVVANAVAALAEIEENS--S- 152 (860)
Q Consensus 85 ~v~~~l~d---~~~~VRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~D-----~d~~V~~~al~~l~~i~~~~--~- 152 (860)
.+.+.+.+ ..++||.+.+.++..+.+. .|+.-+ ++++.+..++.. .++...-.++.+|..+.+.- .
T Consensus 104 ~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~ 181 (963)
T 2x19_B 104 QLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP--CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR 181 (963)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccc--hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhccc
Confidence 33333332 4699999999999999876 365444 367777777764 25445556666665554321 0
Q ss_pred ---------C-CchhccHHHHHHHHHHhccC--ChhHHHHHHHHHHhccccC--HHHHHHHHHHHhhhhcCCChHHHHHH
Q 002996 153 ---------R-PIFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAAD--AREAENIVERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 153 ---------~-~~~~~~~~~~~~Ll~~l~~~--~~w~q~~il~~L~~~~~~~--~~~~~~ll~~v~~~l~~~n~aVv~~a 218 (860)
. ......+..+.-+...+.+. +.|....+++++..+.+-+ ......+++.+...+.. +.+...|
T Consensus 182 ~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~--~~~~~~a 259 (963)
T 2x19_B 182 LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQD--SELFDSS 259 (963)
T ss_dssp C---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTS--TTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCC--chHHHHH
Confidence 0 01111222222233333332 3378888888886554311 11113455555555532 2221222
Q ss_pred --HHHHHhhhccCh---HHHHHHHHHhhhH---HHhhc-CCChhHHHHHHHHHHHHHhhChhhhh------cc----ce-
Q 002996 219 --MILQQMELITST---DVVRNLCKKMAPP---LVTLL-SAEPEIQYVALRNINLIVQRRPTILA------HE----IK- 278 (860)
Q Consensus 219 --~~~~~l~~~~~~---~~~~~~~~~~~~~---L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~------~~----~~- 278 (860)
++...+..-..+ .....+...+... +...+ ..+.+..--..+.+..++..++..+. ++ +.
T Consensus 260 ~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 339 (963)
T 2x19_B 260 VEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNM 339 (963)
T ss_dssp HHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHH
Confidence 111222110011 1111121111111 00011 12332222222344444433333222 11 11
Q ss_pred EEEecc-----CCcHHHHHHHHHHHHHhcCc-----------------ccHHHHHHHHHHhhhh-c---------c--H-
Q 002996 279 VFFCKY-----NDPIYVKMEKLEIMIKLASD-----------------RNIDQVLLEFKEYATE-V---------D--V- 323 (860)
Q Consensus 279 ~~~~l~-----~d~~~Ik~~~L~lL~~l~~~-----------------~Nv~~Iv~eL~~y~~~-~---------d--~- 323 (860)
.+.|.. ..+..+...+++....++.+ .-+..++..+...+.. . | .
T Consensus 340 ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~ 419 (963)
T 2x19_B 340 IMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQ 419 (963)
T ss_dssp HHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHH
T ss_pred HHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHH
Confidence 111211 12333566667666666541 1112222222222211 0 0 1
Q ss_pred --HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-------hhh-hHHHHHHHHHHHHHhCcccHHHHHHHHHHhhc
Q 002996 324 --DFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-------VNY-VVQEAIIVIKDIFRRYPNTYESIIATLCESLD 393 (860)
Q Consensus 324 --~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~-------~~~-v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~ 393 (860)
++++.+...+..++..++. .++..+++.+... .+. ..+.++..+..+...-.+.....+..++..+.
T Consensus 420 ~~~~r~~~~~~L~~~~~~~~~---~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~ 496 (963)
T 2x19_B 420 FRIYRVDISDTLMYVYEMLGA---ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP 496 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Confidence 2344555555555654442 2344444433221 121 23334445555554322211123444554443
Q ss_pred cC--CchHHHHHHHHHHhhcccccCC-H---HHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHHH
Q 002996 394 TL--DEPEAKASMIWIIGEYAERIDN-A---DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE---GPQQMIQVVL 464 (860)
Q Consensus 394 ~~--~~~~~~~~~~wilGEy~~~i~~-~---~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~---~~~~~i~~~l 464 (860)
.+ .+|..+..++|++|.|++.+.. + +.+++.++..+.+ +.|+.....|+.++...++.. -..+++..++
T Consensus 497 ~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 497 RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQ 574 (963)
T ss_dssp GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33 3677889999999999986542 2 2335555655543 789999999999998765432 1345555555
Q ss_pred HhcccCCCChHHHHHHHH
Q 002996 465 NNATVETDNPDLRDRAYI 482 (860)
Q Consensus 465 ~~~~~~s~~~evrdRA~~ 482 (860)
+.......+.+.|..+++
T Consensus 575 ~~l~~~~~~~~~~~~~~e 592 (963)
T 2x19_B 575 DVLMKQIHKTSQCMWLMQ 592 (963)
T ss_dssp HHHHTTCSCHHHHHHHHH
T ss_pred HHhccCCCChHHHHHHHH
Confidence 543221223444444433
No 63
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.20 E-value=1.1e-06 Score=81.36 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=61.5
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHh
Q 002996 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL 128 (860)
Q Consensus 49 n~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~l 128 (860)
+.+.+.|+|+|+.+|..|++.|+.++.+. .+.+.+++.|+++.||..|+.++.++-. ...++.|.++
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~ 81 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKL 81 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHH
Confidence 44555666666666666666666666543 2445566666666666666666655431 1244555566
Q ss_pred hcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHH
Q 002996 129 ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALS 186 (860)
Q Consensus 129 L~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~ 186 (860)
|.|.|+.|...|+.+|..+.. ...+..|+..+.+.++|.+....+.|.
T Consensus 82 L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 82 LEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666666666666666665531 123445555555556665555555443
No 64
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.17 E-value=0.00022 Score=82.27 Aligned_cols=333 Identities=12% Similarity=0.074 Sum_probs=196.9
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhh----hHH-HHHHHHHhhhcCCChHHHHHHHHHHHHHHhh-cc---cc
Q 002996 47 AVNTFVKDSQDPNPLIRALAVRTMGCIR--VDK----ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---EL 115 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~lALr~l~~i~--~~e----~~~-~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~-~p---~~ 115 (860)
.+..+.+-|.++++.++..|..+|.++. ..+ +++ -.++.+.++|.+.++.|+..|+-|+..|-.. ++ ..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 3566777788999999888888887764 233 222 2478899999999999999999999998753 23 34
Q ss_pred cccccHHHHHHHhhcC-CChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhc------------------cCChh
Q 002996 116 VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN------------------ECTEW 176 (860)
Q Consensus 116 ~~~~~~~~~l~~lL~D-~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~------------------~~~~w 176 (860)
+.+.+-++.|.++|.. .+..+..+|..+|..+.... .....+....+..|++.+. ..++-
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 4456789999999985 67888999999999887643 2223333334445554431 01233
Q ss_pred HHHHHHHHHHhccccCHHHHHH------HHHHHhhhhcC------CChHHHHHH-HHHHHhhhccChHH-----HHHHH-
Q 002996 177 GQVFILDALSRYKAADAREAEN------IVERVTPRLQH------ANCAVVLSA-MILQQMELITSTDV-----VRNLC- 237 (860)
Q Consensus 177 ~q~~il~~L~~~~~~~~~~~~~------ll~~v~~~l~~------~n~aVv~~a-~~~~~l~~~~~~~~-----~~~~~- 237 (860)
.+.....+|..+...+++.... +++.+...+++ .+...+-+| .++..+.+-...+. ..+..
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 4455566666665444321222 22233333321 222333344 22222211000000 00000
Q ss_pred -------------------HHhhhHHHhhcCCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHH
Q 002996 238 -------------------KKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 298 (860)
Q Consensus 238 -------------------~~~~~~L~~lls~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL 298 (860)
..+++.|+.+| .......++..+.-.|
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL----------------------------------~~s~~~~v~E~Aa~AL 333 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLL----------------------------------KESKTPAILEASAGAI 333 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHH----------------------------------HHCCCHHHHHHHHHHH
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHH----------------------------------ccCCCHHHHHHHHHHH
Confidence 00111222222 0122345555666666
Q ss_pred HHhcCcc-----cH------HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhhh-----
Q 002996 299 IKLASDR-----NI------DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKIKV----- 359 (860)
Q Consensus 299 ~~l~~~~-----Nv------~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~---~~~~~~v~~ll~ll~~~~----- 359 (860)
..||... .+ ...+.-|.+.+...+...++.++.+|+.|+.--. ......+.-|+.+|..+.
T Consensus 334 ~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~ 413 (584)
T 3l6x_A 334 QNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSW 413 (584)
T ss_dssp HHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGG
T ss_pred HHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccc
Confidence 5554321 11 2336666777777788888888888888875321 123467788888888652
Q ss_pred ---hhhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHhhccC-CchHHHHHHHHHHhhcccc
Q 002996 360 ---NYVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLDTL-DEPEAKASMIWIIGEYAER 414 (860)
Q Consensus 360 ---~~v~~e~i~~l~~i~~~~p~~~~-----~~i~~L~~~l~~~-~~~~~~~~~~wilGEy~~~ 414 (860)
+.+...+...+.+|+..+++... .++..|+..+++- ..+.+.+.++|+|......
T Consensus 414 ~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 414 NFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 34666777788888877776544 3588888888653 3567888889999887654
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.17 E-value=0.00078 Score=80.81 Aligned_cols=264 Identities=9% Similarity=0.130 Sum_probs=156.9
Q ss_pred HHHHHhhcC---CCCHHHHhHHHHHhcCCChh---hhHHHHHHHHHhhhcCCC--------hHHHHHHHHHHHHHHhhcc
Q 002996 48 VNTFVKDSQ---DPNPLIRALAVRTMGCIRVD---KITEYLCDPLQRCLKDDD--------PYVRKTAAICVAKLYDINA 113 (860)
Q Consensus 48 in~l~kDl~---~~n~~ir~lALr~l~~i~~~---e~~~~l~~~v~~~l~d~~--------~~VRk~A~~~l~kl~~~~p 113 (860)
...|.+=|- +.++++|+-|+-.||-|..- +..+.| ...+.+.+ +.||..|++++..+|-=..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL----~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYL----KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHH----HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHH----HHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 344555554 67899999999999876522 344444 44444433 8999999999998874222
Q ss_pred cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhcc--CChhHHHHHHHHHHhcccc
Q 002996 114 ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE--CTEWGQVFILDALSRYKAA 191 (860)
Q Consensus 114 ~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~--~~~w~q~~il~~L~~~~~~ 191 (860)
+ .+..+.|..+|.|.+..+...|..+|--|.-..+. ...+..|+..+.+ .+.|..-.. -.|......
T Consensus 470 ~----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa-lgLGll~~g 538 (963)
T 4ady_A 470 N----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA-VGLALINYG 538 (963)
T ss_dssp C----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH-HHHHHHTTT
T ss_pred C----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH-HHHHhhhCC
Confidence 1 13667888888877764443444445444332221 1345555555422 234443322 233333333
Q ss_pred CHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhcc--ChHHHHHHHHHhhhHHHhhc--CCChhHHHHHHHHHHHHHh
Q 002996 192 DAREAENIVERVTPRLQHANCAVVLSAMILQQMELIT--STDVVRNLCKKMAPPLVTLL--SAEPEIQYVALRNINLIVQ 267 (860)
Q Consensus 192 ~~~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~--~~~~~~~~~~~~~~~L~~ll--s~~~niry~aL~~l~~l~~ 267 (860)
+++.+..+++.+. .+.++.+.+.++....+.++. +...++ .|+..+ ..+.++|-.|.-.|..|..
T Consensus 539 ~~e~~~~li~~L~---~~~dp~vRygaa~alglAyaGTGn~~aIq--------~LL~~~~~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 539 RQELADDLITKML---ASDESLLRYGGAFTIALAYAGTGNNSAVK--------RLLHVAVSDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp CGGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTSCCHHHHH--------HHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhcCCCCHHHHH--------HHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence 4445556665443 356888888874333333332 333333 233332 3456788888888888876
Q ss_pred hChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 002996 268 RRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 339 (860)
Q Consensus 268 ~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k 339 (860)
..|+.+.+.+..+ ..+.++.||+.+.-.|-.++..+.-..+++-|..+..+.|..++..++.++|.+...
T Consensus 608 g~~e~v~rlv~~L--~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 608 RDYTTVPRIVQLL--SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp SSCSSHHHHTTTG--GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 6665433222111 234557788888877777766555577777777777788888888888888877653
No 66
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.16 E-value=9.1e-07 Score=82.01 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=87.9
Q ss_pred chHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh
Q 002996 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (860)
Q Consensus 10 ~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~ 89 (860)
....+++++.+++...|..+..++..+... . +..|.+-|+|+++.+|..|+++|+.++.++.+ +.+.++
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~---~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~----~~L~~~ 81 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDE----A---FEPLLESLSNEDWRIRGAAAWIIGNFQDERAV----EPLIKL 81 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSST----T---HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHH----HHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCch----H---HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHH----HHHHHH
Confidence 345566788888888887766555544322 1 37788888999999999999999999987654 456677
Q ss_pred hcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002996 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (860)
Q Consensus 90 l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~ 146 (860)
+.|+++.||+.|+.++.++-. ...++.|.++|+|.|+.|...|+.+|..
T Consensus 82 L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 82 LEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 789999999999999998752 2367888999999999999999887754
No 67
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.13 E-value=0.00044 Score=79.83 Aligned_cols=358 Identities=14% Similarity=0.095 Sum_probs=199.0
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc-CCCCchh
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN-SSRPIFE 157 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~-~~~~~~~ 157 (860)
-++.+.++|.+.++-++..|+.++.++...+++ .+.+.+-++.|.++|...++.|...|+.+|..|+.. +......
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 356678888999999999999999888865543 233457889999999999999999999999999863 2111111
Q ss_pred -ccHHHHHHHHHHhcc-CChhHHHHHHHHHHhccccC--HHHH-HHHHHHHhhhh-----------------cC-CChHH
Q 002996 158 -ITSHTLSKLLTALNE-CTEWGQVFILDALSRYKAAD--AREA-ENIVERVTPRL-----------------QH-ANCAV 214 (860)
Q Consensus 158 -~~~~~~~~Ll~~l~~-~~~w~q~~il~~L~~~~~~~--~~~~-~~ll~~v~~~l-----------------~~-~n~aV 214 (860)
.-...+..|+..|.. .++-.|.....+|..+...+ .... ..-+..+..++ ++ .+..|
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 112346677777765 34545555555555443321 1111 11122222222 11 23466
Q ss_pred HHHH-HHHHHhhhccChHHHHHHHH--HhhhHHHhhcC-------CChhHHHHHHHHHHHHHhhChhhhhccceEEEecc
Q 002996 215 VLSA-MILQQMELITSTDVVRNLCK--KMAPPLVTLLS-------AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 284 (860)
Q Consensus 215 v~~a-~~~~~l~~~~~~~~~~~~~~--~~~~~L~~lls-------~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~ 284 (860)
...| -++..+.. .+++..+.+.+ -++++|+.++. .+..++--++..|..|+.....-............
T Consensus 209 ~~nAa~~L~NLs~-~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 209 LTNTAGCLRNVSS-ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 6655 23333311 12232232221 23456777663 23346666677777666432110000000000000
Q ss_pred CCcHHHHHHHHHHHHHhcCcccH-----HHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHh---hhh------hHHHHHH
Q 002996 285 NDPIYVKMEKLEIMIKLASDRNI-----DQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIK---LER------AAERCIS 349 (860)
Q Consensus 285 ~d~~~Ik~~~L~lL~~l~~~~Nv-----~~Iv~eL~~y~~~-~d~~~~~~~i~~I~~la~k---~~~------~~~~~v~ 349 (860)
++...+ ...+..-+ ..+++-|+..+.. .+.+.++.++.+|..++.- .+. .....+.
T Consensus 288 ~~~~~~---------~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 288 NVANNT---------GTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp -----------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred cccccc---------cccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 000000 01122222 1445555555543 4678888899999888631 111 1247799
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHhhccCC-------chHHHHHHHHHHhhcccc-cCCH
Q 002996 350 VLLELIKIKVNYVVQEAIIVIKDIFRRYPN---TYESIIATLCESLDTLD-------EPEAKASMIWIIGEYAER-IDNA 418 (860)
Q Consensus 350 ~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~---~~~~~i~~L~~~l~~~~-------~~~~~~~~~wilGEy~~~-i~~~ 418 (860)
.|++||......+...++..|+++...... +...++..|++.|..-. ..++...++|.+|+-... -.+.
T Consensus 359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 359 AIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999888999999899888754222 35678999999886432 356778899999876422 1111
Q ss_pred H-----HHHHHHHhhCCC--CcHHHHHHHHHHHHHHhh
Q 002996 419 D-----ELLESFLESFPE--EPAQVQLQLLTATVKLFL 449 (860)
Q Consensus 419 ~-----~~l~~~~~~~~~--e~~~v~~~iLta~~Kl~~ 449 (860)
. ..+..+.+-... .++.++...-.++.-++.
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 1 122233322112 356666666667776765
No 68
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.13 E-value=3.3e-05 Score=79.57 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=122.2
Q ss_pred CCcccchH-HHhHhccCCCcchHHHHHHHHHHhcCCC-----CcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCCh--
Q 002996 5 KDVSSLFT-DVVNCMQTENLELKKLVYLYLINYAKSQ-----PDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIRV-- 75 (860)
Q Consensus 5 ~d~s~~f~-~vi~l~~s~~~~~Krl~Yl~l~~~~~~~-----~el~~L~in~l~kDl~-~~n~~ir~lALr~l~~i~~-- 75 (860)
.|+..-++ .+...+.+++...|+.+...+..+.+.. ++. .-+++.+.+-+. |+|+.+|..|+++++.+..
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 34555444 4667889999999999999998887652 232 344677888884 8999999999999998762
Q ss_pred -h---hhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002996 76 -D---KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 76 -~---e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~ 151 (860)
+ ..++.+++.|.+.+.|+++.||..|..|+..++...+ ++ .+++.+...|.++++.|...++..+..+....
T Consensus 89 ~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~--~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 89 AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE--AQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp GGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 2 4557789999999999999999999999999987543 22 47899999999999999999999998865442
Q ss_pred -CCC-chhccHHHHHHHHHHhccCCh
Q 002996 152 -SRP-IFEITSHTLSKLLTALNECTE 175 (860)
Q Consensus 152 -~~~-~~~~~~~~~~~Ll~~l~~~~~ 175 (860)
+.. ....++..+..|+..+.+.++
T Consensus 165 ~~~~~~~~~l~~l~p~l~~~l~D~~~ 190 (242)
T 2qk2_A 165 QPTALNKKLLKLLTTSLVKTLNEPDP 190 (242)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHTSSCH
T ss_pred CCCCccHHHHHHHHHHHHHHhcCCCh
Confidence 211 112223344455555544443
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.10 E-value=0.00015 Score=82.21 Aligned_cols=349 Identities=10% Similarity=0.085 Sum_probs=191.7
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCC--hhh----hH-HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccc---cc
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDK----IT-EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~--~~e----~~-~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~---~~ 117 (860)
+..+.+-|.++|+.++..|..+|.++. .++ ++ .-.++.+.++|.+.++.+++.|+.++..+...+++. +.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344556666777788877777777653 222 22 234678889999999999999999999998754432 33
Q ss_pred cccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhc--------cC--------ChhHHHH
Q 002996 118 DRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN--------EC--------TEWGQVF 180 (860)
Q Consensus 118 ~~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~--------~~--------~~w~q~~ 180 (860)
+.+.++.|.++|. +.++.+...|+.+|..++.. +.....+....+..|+..|. .. ++=.+..
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 4578899999998 78899999999999999876 23222233366777777772 11 1222235
Q ss_pred HHHHHHhccccCHHHHH------HHHHHHhhhhcC------CChHHHHHH-HHHHHhhhcc---ChHHHHHHHHHh----
Q 002996 181 ILDALSRYKAADAREAE------NIVERVTPRLQH------ANCAVVLSA-MILQQMELIT---STDVVRNLCKKM---- 240 (860)
Q Consensus 181 il~~L~~~~~~~~~~~~------~ll~~v~~~l~~------~n~aVv~~a-~~~~~l~~~~---~~~~~~~~~~~~---- 240 (860)
....|..++.. ++... ..+..+...|++ .+..++-.| .++..+.+.. .+.....+....
T Consensus 163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 56666655543 33222 233444444543 222233333 1222221000 000000000000
Q ss_pred --hhHHHhhcC------------------CCh-h----HHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHH
Q 002996 241 --APPLVTLLS------------------AEP-E----IQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKL 295 (860)
Q Consensus 241 --~~~L~~lls------------------~~~-n----iry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L 295 (860)
......+-. ..+ . +..-+++.+..+... .++..++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~----------------~~~~~~~e~a~ 305 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK----------------SKKDATLEACA 305 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH----------------CCCHHHHHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh----------------cCCHHHHHHHH
Confidence 000000000 000 0 011122222222211 12234555555
Q ss_pred HHHHHhcCccc-----H-H------HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhhh-
Q 002996 296 EIMIKLASDRN-----I-D------QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKIKV- 359 (860)
Q Consensus 296 ~lL~~l~~~~N-----v-~------~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~---~~~~~~v~~ll~ll~~~~- 359 (860)
-.|..+|..++ + + .+++-|.+.+.+.+.+++++++.+|+.++..-. ......+..|+++|....
T Consensus 306 ~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~ 385 (457)
T 1xm9_A 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTG 385 (457)
T ss_dssp HHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCS
T ss_pred HHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCC
Confidence 55555543211 1 1 123455566666777777777777777764211 112356777888887653
Q ss_pred -----hhhHHHHHHHHHHHHHhCcccH-----HHHHHHHHHhhccCCchHHHHHHHHHHhhcccc
Q 002996 360 -----NYVVQEAIIVIKDIFRRYPNTY-----ESIIATLCESLDTLDEPEAKASMIWIIGEYAER 414 (860)
Q Consensus 360 -----~~v~~e~i~~l~~i~~~~p~~~-----~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 414 (860)
+.+...++..+.+++...++.. ..+++.|++.+..-..+++++.+.|+|..|...
T Consensus 386 ~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp CSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 2466677778888887776643 346788888776532678889999999998754
No 70
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00038 Score=81.85 Aligned_cols=92 Identities=10% Similarity=0.036 Sum_probs=69.8
Q ss_pred CHHHHhHHHHHhcCCCh-----hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccc----ccccccHHHHHHHhh
Q 002996 59 NPLIRALAVRTMGCIRV-----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE----LVEDRGFLESLKDLI 129 (860)
Q Consensus 59 n~~ir~lALr~l~~i~~-----~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~----~~~~~~~~~~l~~lL 129 (860)
++.+|.+|+-.|++++. ..-+..+.+.+.+.+.+.+.-.|+-|+-++..+- .+|+ +..+.++++.|.+++
T Consensus 307 ~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 307 VEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTMI 385 (778)
T ss_dssp SGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHHH
Confidence 36889999999988762 1223567888888888866556999999998764 3453 344567889999999
Q ss_pred cC-CChhHHHHHHHHHHHHhhcC
Q 002996 130 SD-NNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 130 ~D-~d~~V~~~al~~l~~i~~~~ 151 (860)
++ .+..+.+.++..|.-+....
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCC
T ss_pred hCCCCchHHHHHHHHHHHhcCCC
Confidence 85 77889999999998887653
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.98 E-value=0.00054 Score=77.08 Aligned_cols=330 Identities=11% Similarity=0.085 Sum_probs=172.2
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhh----H-HHHHHHHHhhhcCC------------ChHHHHHHHHHHHHHHh
Q 002996 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKI----T-EYLCDPLQRCLKDD------------DPYVRKTAAICVAKLYD 110 (860)
Q Consensus 48 in~l~kDl~~~n~~ir~lALr~l~~i~~~e~----~-~~l~~~v~~~l~d~------------~~~VRk~A~~~l~kl~~ 110 (860)
+..+...+.+.|+.-..-.|-.|+. .++. . --.+|.+.++|.+. ++-+|..|+-|+.-|..
T Consensus 34 ~~~l~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~ 111 (458)
T 3nmz_A 34 VYSLLSMLGTHDKDDMSRTLLAMSS--SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH 111 (458)
T ss_dssp -----------CCHHHHHHHHHHHS--STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHc--CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc
Confidence 4556666666555533333333332 2222 1 22355666777652 37999999999999999
Q ss_pred hccccccc---ccHH----------HHHHHhhcCC--------ChhH-------HHHHHHHHHHHhhcCCCCc-hhccHH
Q 002996 111 INAELVED---RGFL----------ESLKDLISDN--------NPMV-------VANAVAALAEIEENSSRPI-FEITSH 161 (860)
Q Consensus 111 ~~p~~~~~---~~~~----------~~l~~lL~D~--------d~~V-------~~~al~~l~~i~~~~~~~~-~~~~~~ 161 (860)
-.||.... ...+ +.+.+++... ++ | ..+|+.+|..|..+ +... .-.-..
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G 189 (458)
T 3nmz_A 112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNP-MPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELG 189 (458)
T ss_dssp HSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC---CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTT
T ss_pred cCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCC-ccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCC
Confidence 98886542 1222 2223334321 11 3 33778888877533 1110 000112
Q ss_pred HHHHHHHHhcc-----------CChhHHHHHHHHHHhccccCHHHH------HHHHHHHhhhhcCCChHHHHHH-HHHHH
Q 002996 162 TLSKLLTALNE-----------CTEWGQVFILDALSRYKAADAREA------ENIVERVTPRLQHANCAVVLSA-MILQQ 223 (860)
Q Consensus 162 ~~~~Ll~~l~~-----------~~~w~q~~il~~L~~~~~~~~~~~------~~ll~~v~~~l~~~n~aVv~~a-~~~~~ 223 (860)
.+..|+..|.. .++-.|......|..++..++... ...+..+..+|++.++.|...| ..+..
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455554421 123356667777777665554221 2346677788888888776666 23333
Q ss_pred hhhccChHHHHHHHH-HhhhHHHhhc-C-CChhHHHHHHHHHHHHHhhCh----hhhhc--cceEE-EeccCCc-H---H
Q 002996 224 MELITSTDVVRNLCK-KMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRP----TILAH--EIKVF-FCKYNDP-I---Y 289 (860)
Q Consensus 224 l~~~~~~~~~~~~~~-~~~~~L~~ll-s-~~~niry~aL~~l~~l~~~~p----~~~~~--~~~~~-~~l~~d~-~---~ 289 (860)
+-.-.+.+....+.+ ..+++|+.+| + .+++++-.++.+|..|+...+ .+... -+..+ ..+.+.+ . .
T Consensus 270 Ls~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~ 349 (458)
T 3nmz_A 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 349 (458)
T ss_dssp HTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTH
T ss_pred HhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHH
Confidence 321111222222222 3567889864 4 577899988888888887432 22211 11111 1122222 1 4
Q ss_pred HHHHHHHHHHHhc-----CcccHHHH-----HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHH
Q 002996 290 VKMEKLEIMIKLA-----SDRNIDQV-----LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA-----AERCISVLLEL 354 (860)
Q Consensus 290 Ik~~~L~lL~~l~-----~~~Nv~~I-----v~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-----~~~~v~~ll~l 354 (860)
++..+.-+|..++ +++|...+ +..|.+.+.+.+.+.++.++.+|+.++..-+.. ..-.+..|+++
T Consensus 350 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 350 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 7777777777765 45555443 345666666677777777777777777432221 12345666666
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhCcccH
Q 002996 355 IKIKVNYVVQEAIIVIKDIFRRYPNTY 381 (860)
Q Consensus 355 l~~~~~~v~~e~i~~l~~i~~~~p~~~ 381 (860)
+..+...+.+.+...+.+|..++|..|
T Consensus 430 L~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 430 IHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 666555566666667777766666554
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.87 E-value=0.00082 Score=83.75 Aligned_cols=427 Identities=10% Similarity=0.073 Sum_probs=199.7
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhH----HH
Q 002996 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKIT----EY 81 (860)
Q Consensus 13 ~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-------~~e~~----~~ 81 (860)
+++..+.+.|-..|+-+.-++..+ +.+|+-...+..-+.+ +.++.+|-.|+.+|-+.. .++-. +.
T Consensus 11 ~~l~~~~~~d~~~r~~A~~~L~~~-~~~p~~w~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 11 EAVVSFYRSNSQNQAITHEWLTDA-EASPQAWQFSWQLMQL---GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp CTHHHHHTSTTTC----CHHHHHT-TTSTHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 344444456777888888888774 5557744344333332 578999999988887531 12222 34
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCC------ChhHHHHHHHHHHHHhh----cC
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN------NPMVVANAVAALAEIEE----NS 151 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~------d~~V~~~al~~l~~i~~----~~ 151 (860)
++..+.+.- ...++||.+.+.++..+.+.+-..-+ ++++.+..++... ++...-.++.+|..+.+ .+
T Consensus 87 ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 87 ILESIVRFA-GGPKIVLNRLCISLGAYIVHMLGEWP--GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcccccc--HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 444444332 23689999999999999886422222 2455555566543 45555566666654442 22
Q ss_pred CCCc----hhccHHHHHHHH----HHhccC-Ch------h-HHHHHHHHHHhccc-----cCHHHHHHHHHHHhhhhc--
Q 002996 152 SRPI----FEITSHTLSKLL----TALNEC-TE------W-GQVFILDALSRYKA-----ADAREAENIVERVTPRLQ-- 208 (860)
Q Consensus 152 ~~~~----~~~~~~~~~~Ll----~~l~~~-~~------w-~q~~il~~L~~~~~-----~~~~~~~~ll~~v~~~l~-- 208 (860)
.... .+.+...+..++ +.+.+. ++ | ....+++++..|.. .+ ....+++.+.. |.
T Consensus 164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~ 240 (971)
T 2x1g_F 164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHK 240 (971)
T ss_dssp CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhh
Confidence 1100 011111112222 222111 11 3 45567777765432 22 22344554443 30
Q ss_pred --------------CCChHHHHHH--HHHHHhhhccC---hHHHHHHHHHhhhHHHhh---c-CCCh---hHHHHHHHHH
Q 002996 209 --------------HANCAVVLSA--MILQQMELITS---TDVVRNLCKKMAPPLVTL---L-SAEP---EIQYVALRNI 262 (860)
Q Consensus 209 --------------~~n~aVv~~a--~~~~~l~~~~~---~~~~~~~~~~~~~~L~~l---l-s~~~---niry~aL~~l 262 (860)
+.++.+.-.| ++...+..-.. ......++..+......+ + ..+. +......+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~ 320 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLF 320 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHH
Confidence 0122222222 12222211000 112222222221111111 1 2343 6666666777
Q ss_pred HHHHhhChhhhh-----------cc----ce-EEEec-c----CCcHHHHHHHHHHHHHhcCc----------c------
Q 002996 263 NLIVQRRPTILA-----------HE----IK-VFFCK-Y----NDPIYVKMEKLEIMIKLASD----------R------ 305 (860)
Q Consensus 263 ~~l~~~~p~~~~-----------~~----~~-~~~~l-~----~d~~~Ik~~~L~lL~~l~~~----------~------ 305 (860)
..+...++..+. .+ +. .+.|. + .++..+...+++.++.++.+ .
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~ 400 (971)
T 2x1g_F 321 VSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI 400 (971)
T ss_dssp HHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 777766655443 12 22 12222 1 34566888888888777541 1
Q ss_pred --cHHHHHHHHHHhhh---hc-----c-------HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhh----hhh-h
Q 002996 306 --NIDQVLLEFKEYAT---EV-----D-------VDFVRKAVRAIGRCAIKLER-AAERCISVLLELIKIK----VNY-V 362 (860)
Q Consensus 306 --Nv~~Iv~eL~~y~~---~~-----d-------~~~~~~~i~~I~~la~k~~~-~~~~~v~~ll~ll~~~----~~~-v 362 (860)
-+..+++.+..-+. +. | .++|+.+...+..++..++. .....++.+-..+... .+. .
T Consensus 401 ~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~ 480 (971)
T 2x1g_F 401 KPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTK 480 (971)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHH
Confidence 11122333332221 10 1 13566666666666765551 2222333333333321 121 2
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHhhccC----CchHHHHHHHHHHhhcccccCC----HHHHHHHHHhhCCCCcH
Q 002996 363 VQEAIIVIKDIFRRYPNTYESIIATLCESLDTL----DEPEAKASMIWIIGEYAERIDN----ADELLESFLESFPEEPA 434 (860)
Q Consensus 363 ~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~----~~~~~~~~~~wilGEy~~~i~~----~~~~l~~~~~~~~~e~~ 434 (860)
.+.++..+..+.+.-++.....+..+++.+..+ .+|.++..++|++|.|++.+.. -+.++..++..+ + +
T Consensus 481 ~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~ 557 (971)
T 2x1g_F 481 LEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--S 557 (971)
T ss_dssp HHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--S
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--h
Confidence 333444555554332221122334444433222 2677889999999999987653 344555555554 2 6
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 002996 435 QVQLQLLTATVKLFLKKP 452 (860)
Q Consensus 435 ~v~~~iLta~~Kl~~~~p 452 (860)
.|+...-.|+.++...++
T Consensus 558 ~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 558 SMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp SCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888888886554
No 73
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00013 Score=75.43 Aligned_cols=137 Identities=10% Similarity=0.103 Sum_probs=108.5
Q ss_pred HhccCCCcchHHHHHHHHHH-hcCCCCcHH------HHHHHHHHhhc-CCCCHHHHhHHHHHhcCCCh----h----hhH
Q 002996 16 NCMQTENLELKKLVYLYLIN-YAKSQPDLA------ILAVNTFVKDS-QDPNPLIRALAVRTMGCIRV----D----KIT 79 (860)
Q Consensus 16 ~l~~s~~~~~Krl~Yl~l~~-~~~~~~el~------~L~in~l~kDl-~~~n~~ir~lALr~l~~i~~----~----e~~ 79 (860)
..++|++-..||-++..+.. +++..+++. .-++..+.+-+ +|+|..+|..|+++++.+.. + ...
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 45689999999999999999 875433322 23478888889 79999999999999988642 2 344
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhc-ccccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 80 ~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~-p~~~~--~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
..+++.|...+.|+.+.||..|..|+-.++... |.... -..+++.|...|..+++.|...++..+..+....+
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 567889999999999999999999999999854 33221 12478888899999999999999999988876644
No 74
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0091 Score=70.26 Aligned_cols=455 Identities=13% Similarity=0.128 Sum_probs=250.6
Q ss_pred CCcchHHHHHHHHHHh---cCCCCcHHHHHHHHHHhhc--CCCCHHHHhHHHHHhcCCC--hh-hhHHHHHHHHHhhh--
Q 002996 21 ENLELKKLVYLYLINY---AKSQPDLAILAVNTFVKDS--QDPNPLIRALAVRTMGCIR--VD-KITEYLCDPLQRCL-- 90 (860)
Q Consensus 21 ~~~~~Krl~Yl~l~~~---~~~~~el~~L~in~l~kDl--~~~n~~ir~lALr~l~~i~--~~-e~~~~l~~~v~~~l-- 90 (860)
+|...+.+.-+|+..+ -...+++ +-|.+++ ....+.+|+++|=.++..- .+ +.-+.+...+..++
T Consensus 145 ~~~~~~~~l~~~~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e 219 (778)
T 3opb_A 145 EDTHVTYLLSIILQLLNKFKYNFKEV-----RFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVE 219 (778)
T ss_dssp CSSCHHHHHHHHHHHHHHSCCCSTTT-----THHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHcCccccch-----hhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHh
Confidence 4444554433343333 3344664 4444554 4567789999988888764 12 22233333333333
Q ss_pred --c--CCChHHHHHHHHHHHHHHhhcccccc----cccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCCchhccHH
Q 002996 91 --K--DDDPYVRKTAAICVAKLYDINAELVE----DRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (860)
Q Consensus 91 --~--d~~~~VRk~A~~~l~kl~~~~p~~~~----~~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~ 161 (860)
. +.++++ .++-++.-+|-..|+... .+++.+.+.+.+. .++..+..+++.+|...|.+. .+-..+.+
T Consensus 220 ~~~~~~~~~~~--~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~--~cR~~I~~ 295 (778)
T 3opb_A 220 AEIDVGNDPLS--IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE--TMRTYITE 295 (778)
T ss_dssp HHHTCSSCHHH--HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH--HHHHHHHH
T ss_pred hccCCCCccHH--HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc--HHHHHHHH
Confidence 2 466664 567777778888887543 4578888887774 455666677777777665442 12222233
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcc---ccCHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhcc-ChHHHHHHH
Q 002996 162 TLSKLLTALNECTEWGQVFILDALSRYK---AADAREAENIVERVTPRLQHANCAVVLSAMILQQMELIT-STDVVRNLC 237 (860)
Q Consensus 162 ~~~~Ll~~l~~~~~w~q~~il~~L~~~~---~~~~~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~-~~~~~~~~~ 237 (860)
.+...+..+-.. +-.+...+=.|.+.. ........++.+.+...|.+.+....--| ++.|.+++ .++....+.
T Consensus 296 ~~~~~L~~~l~~-~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~A--vEgLaYLSl~~~VKe~L~ 372 (778)
T 3opb_A 296 NYLQLLERSLNV-EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMS--VEALAYLSLKASVKIMIR 372 (778)
T ss_dssp HHHHHHHHHTTS-GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHH--HHHHHHHTTSSHHHHHHH
T ss_pred hHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHH--HHHHHHHhCCHHHHHHHH
Confidence 333333332222 222222222232221 11112234566777777766443221112 23344443 333333332
Q ss_pred H--HhhhHHHhhcC--CChhHHHHHHHHHHHHHhhChhhhh---------------------------------------
Q 002996 238 K--KMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTILA--------------------------------------- 274 (860)
Q Consensus 238 ~--~~~~~L~~lls--~~~niry~aL~~l~~l~~~~p~~~~--------------------------------------- 274 (860)
. .+...|+.++. .++.+.|-++..|..++...|....
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 2 23344666664 4678999999999888764432100
Q ss_pred --cc--ceEE-EeccCCcHHHHHHHHHHHHHhcCcc-cHHH-----HHHHHHHhhhhccHH---HHHHHHHHHHHHHHhh
Q 002996 275 --HE--IKVF-FCKYNDPIYVKMEKLEIMIKLASDR-NIDQ-----VLLEFKEYATEVDVD---FVRKAVRAIGRCAIKL 340 (860)
Q Consensus 275 --~~--~~~~-~~l~~d~~~Ik~~~L~lL~~l~~~~-Nv~~-----Iv~eL~~y~~~~d~~---~~~~~i~~I~~la~k~ 340 (860)
.+ +..+ .++.+++..+|..+..+|+.|+... |-.. .++-|+.++.+.... .+..+..++++|+..-
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 00 0111 2244566788888999999987544 3333 345577777655433 7888999999988643
Q ss_pred hhh-------HHHHHHHHHHHHHhh-hh-------------hhHHHHHHHHHHHHHhC----cccHHHHH------HHHH
Q 002996 341 ERA-------AERCISVLLELIKIK-VN-------------YVVQEAIIVIKDIFRRY----PNTYESII------ATLC 389 (860)
Q Consensus 341 ~~~-------~~~~v~~ll~ll~~~-~~-------------~v~~e~i~~l~~i~~~~----p~~~~~~i------~~L~ 389 (860)
.+. ....+..|++||... +. .-..+++..+.++.... .+.+..++ ..|.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 211 125678888888721 11 11457888888886643 13344444 4444
Q ss_pred HhhccCCchHHHHHHHHHHhhcccc-------cC---CHH--HHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCC---
Q 002996 390 ESLDTLDEPEAKASMIWIIGEYAER-------ID---NAD--ELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE--- 454 (860)
Q Consensus 390 ~~l~~~~~~~~~~~~~wilGEy~~~-------i~---~~~--~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~--- 454 (860)
+.+.+ .++..+++++|++...... +- ++. .-+..++.-...++.++|.++.-|++-+....|..
T Consensus 613 ~LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ 691 (778)
T 3opb_A 613 NLMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691 (778)
T ss_dssp HGGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence 54443 4566788888888654321 11 121 12555655556688999998888888876544421
Q ss_pred --ChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhc
Q 002996 455 --GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 488 (860)
Q Consensus 455 --~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~ 488 (860)
.....+..++..+.....|.++|.|+...+.-+.
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 0123455566655432478999999988776554
No 75
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.76 E-value=0.0075 Score=74.92 Aligned_cols=243 Identities=12% Similarity=0.132 Sum_probs=132.9
Q ss_pred cchHHHHHHHHHHhcCCCCcHHH-HHHHHHHhhcC------CCCHHHHhHHHHHhcCCCh---------h------hhHH
Q 002996 23 LELKKLVYLYLINYAKSQPDLAI-LAVNTFVKDSQ------DPNPLIRALAVRTMGCIRV---------D------KITE 80 (860)
Q Consensus 23 ~~~Krl~Yl~l~~~~~~~~el~~-L~in~l~kDl~------~~n~~ir~lALr~l~~i~~---------~------e~~~ 80 (860)
.+.|+-+.-.+..++...++..+ .+.+.+..=++ ++|-..|=.||.+++.|.. . ++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 45677777777777766654332 22222222222 4567788888887776621 1 4555
Q ss_pred HHHHHHHhhhcCC---ChHHHHHHHHHHHHHHhhc-ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC----
Q 002996 81 YLCDPLQRCLKDD---DPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS---- 152 (860)
Q Consensus 81 ~l~~~v~~~l~d~---~~~VRk~A~~~l~kl~~~~-p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~---- 152 (860)
.+...|...+.|+ +|+||.+|+.++.++...- |+... ..++.+...|.|.++.|..+|+.+|..++....
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccc
Confidence 5555666677777 9999999999999987653 33333 356666777888899999999999999876321
Q ss_pred -------CCchhccHHHHHHHHHHhccC---------ChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhh----cC-CC
Q 002996 153 -------RPIFEITSHTLSKLLTALNEC---------TEWGQVFILDALSRYKAADAREAENIVERVTPRL----QH-AN 211 (860)
Q Consensus 153 -------~~~~~~~~~~~~~Ll~~l~~~---------~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l----~~-~n 211 (860)
...-..+.+.+.+|+..+... .+..-.-+-+++..+...-..-...++..+...+ ++ .+
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 112334556666777666553 2322222223323222111111223333333332 22 34
Q ss_pred hHH---HHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhcCC-ChhHHHHHHHHHHHHHhhC
Q 002996 212 CAV---VLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR 269 (860)
Q Consensus 212 ~aV---v~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls~-~~niry~aL~~l~~l~~~~ 269 (860)
+.. .++++ ..+-....++....+...+.+.+...|.. ..+..=-++..+..+....
T Consensus 613 ~~~~~~~~e~l--~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 613 PRFTHYTFESI--GAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHH--HHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHH--HHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 332 23431 11111124455566667777777777743 2333333566666666543
No 76
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.71 E-value=0.00046 Score=73.12 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=113.1
Q ss_pred chHHHhH-hccCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhhH-
Q 002996 10 LFTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKIT- 79 (860)
Q Consensus 10 ~f~~vi~-l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L-----~in~l~kDl~-~~n~~ir~lALr~l~~i~--~~e~~- 79 (860)
+++.++. ++.+++..+|.-+-.++.+++..+++.--. ++..|.+=|+ ++++.+|..|+.+|++|. .+...
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 5677888 999999999999999999999887764222 3344555555 458899999999999984 33322
Q ss_pred ----HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 80 ----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 80 ----~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~---~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
...++.+.++|.+.++-||++|+.++..+...+++.. .+.++++.|..+|.+.|+.|+..|+.+|..|...
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 1357788999999999999999999999988777643 3468999999999999999999999999988765
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.68 E-value=0.0003 Score=74.57 Aligned_cols=185 Identities=12% Similarity=0.044 Sum_probs=128.7
Q ss_pred CCcccchHHHhHhccCCC------------cchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHh-hcCCCCHHHHhHH
Q 002996 5 KDVSSLFTDVVNCMQTEN------------LELKKLVYLYLINYAKSQPDLAIL-----AVNTFVK-DSQDPNPLIRALA 66 (860)
Q Consensus 5 ~d~s~~f~~vi~l~~s~~------------~~~Krl~Yl~l~~~~~~~~el~~L-----~in~l~k-Dl~~~n~~ir~lA 66 (860)
.|....+.+++..+.+++ .+.|..+--.+..+.+. .|.+.. .+..|.+ -|.++++.+|..|
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHH
Confidence 566667778888777652 23555555555555553 222221 3455667 8999999999999
Q ss_pred HHHhcCCC--hhhhHH-----HHHHHHHhhhcC-CChHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChh
Q 002996 67 VRTMGCIR--VDKITE-----YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPM 135 (860)
Q Consensus 67 Lr~l~~i~--~~e~~~-----~l~~~v~~~l~d-~~~~VRk~A~~~l~kl~~~~p~---~~~~~~~~~~l~~lL~D~d~~ 135 (860)
+++|++|. +++.-+ ..++++.++|.+ +++-||++|+.|+..+.+-+|+ .+.+.+.++.|..+|.+.|+.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~ 182 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 99999985 343322 356788888884 6899999999999999886654 333456889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCchhc-cHHHHHHHHHHhccCChhHHHHHHHHHHhccc
Q 002996 136 VVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKA 190 (860)
Q Consensus 136 V~~~al~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~ 190 (860)
|...|+.+|..+....+.....+ -...++.|+..|...++=.+...++.|..+..
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 99999999999987643221111 12356667776666666667777776665543
No 78
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.67 E-value=0.2 Score=61.89 Aligned_cols=129 Identities=9% Similarity=0.092 Sum_probs=85.4
Q ss_pred CCCCHHHHhHHHHHhcCCCh------hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh---cccccccccHHHHHH
Q 002996 56 QDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVEDRGFLESLK 126 (860)
Q Consensus 56 ~~~n~~ir~lALr~l~~i~~------~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~---~p~~~~~~~~~~~l~ 126 (860)
.+++...+-.|+.+++.|.. .+.++.+++.+. .+.+.+|.||.+|+.++.++.+. +|+.++ ..++.+.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~--~vl~~l~ 535 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMIN--SVLPLVL 535 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT--TTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH--HHHHHHH
Confidence 56677888888888887652 234445555333 33446899999999999987653 455554 3677777
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhcc--CChhHHHHHHHHHHhcc
Q 002996 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE--CTEWGQVFILDALSRYK 189 (860)
Q Consensus 127 ~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~--~~~w~q~~il~~L~~~~ 189 (860)
..|.| +.|...|+.++..+++.-+..........+..|...+.. .+.-.+..+++.+....
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 77755 889999999999998764333334445555666555553 34455666666666543
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.63 E-value=0.0013 Score=71.56 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=139.9
Q ss_pred CCHHHHhHHHHHhcCCC--h---hhhH---HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh-cc---cccccccHHHHH
Q 002996 58 PNPLIRALAVRTMGCIR--V---DKIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (860)
Q Consensus 58 ~n~~ir~lALr~l~~i~--~---~e~~---~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~-~p---~~~~~~~~~~~l 125 (860)
.++.++-.|..+|.++. . +..+ .-.++.+.++|.+.++.||..|+-++..+-.. ++ +.+.+.+.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 45778877777777764 1 2222 34589999999999999999999999988653 22 344455788999
Q ss_pred HHhh-cCCChhHHHHHHHHHHHHhhcCCCCchhc--cHHHHHHHHHHhccCC--hh--HHHHHHHHHHhccc---cCHHH
Q 002996 126 KDLI-SDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECT--EW--GQVFILDALSRYKA---ADARE 195 (860)
Q Consensus 126 ~~lL-~D~d~~V~~~al~~l~~i~~~~~~~~~~~--~~~~~~~Ll~~l~~~~--~w--~q~~il~~L~~~~~---~~~~~ 195 (860)
.++| ...++.+..+|+.+|..+..........+ ....+..|++.|...+ +| .+.....+|..+.. .+++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 9974 66788999999999998876321111111 2356677777776543 34 34344444443332 33333
Q ss_pred HHH-----HHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHHh
Q 002996 196 AEN-----IVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQ 267 (860)
Q Consensus 196 ~~~-----ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~~ 267 (860)
... .+..+..+|++.+..+.-+| .++..+- ..+++....+.+ .++++|+.+| ++++.+|-.+..+|..|+.
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-SSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh-CCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 322 35567778888777777776 3333331 123444333332 3577899998 5788999999999999998
Q ss_pred hChhhh
Q 002996 268 RRPTIL 273 (860)
Q Consensus 268 ~~p~~~ 273 (860)
..|...
T Consensus 335 ~~~~~~ 340 (354)
T 3nmw_A 335 NRPAKY 340 (354)
T ss_dssp TCCGGG
T ss_pred CCHHHH
Confidence 877644
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.61 E-value=0.0072 Score=57.26 Aligned_cols=193 Identities=13% Similarity=0.156 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHhcC--cccHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHH
Q 002996 288 IYVKMEKLEIMIKLAS--DRNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ 364 (860)
Q Consensus 288 ~~Ik~~~L~lL~~l~~--~~Nv~~Iv~eL~~y~~~-~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~ 364 (860)
..++.-||.++..+.. ++-++..+++|+..++. .....-.++.+++|.+|.--|.-....|..+..-.+.+.+.+.=
T Consensus 46 wtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikI 125 (253)
T 2db0_A 46 WTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKI 125 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCcccee
Confidence 6777888877777654 45677788888777653 34567778889999999877777777788887777777666666
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-CHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 002996 365 EAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPEEPAQVQLQLLTA 443 (860)
Q Consensus 365 e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-~~~~~l~~~~~~~~~e~~~v~~~iLta 443 (860)
..-.++-.|.+.||++-..++..+.-.+.+ .+..-+.++.-.+|-.|+--. ...-.|..+..-+.+.+..||+....+
T Consensus 126 n~~yaLeeIaranP~l~~~v~rdi~smlts-kd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEt 204 (253)
T 2db0_A 126 NVSYALEEIAKANPMLMASIVRDFMSMLSS-KNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEA 204 (253)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHhChHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHH
Confidence 677789999999999988888887776764 233345555555655554210 011234555555677899999999999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 002996 444 TVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWR 485 (860)
Q Consensus 444 ~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ 485 (860)
+.+++..+|. .++.+...++. .++.+-+|+-...+-+.
T Consensus 205 L~~lA~~npk--lRkii~~kl~e--~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 205 LVHLATLNDK--LRKVVIKRLEE--LNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp HHHHHTSCHH--HHHHHHHHHHH--CCCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCHH--HHHHHHHHHHH--hcCcHHHHHHHHHHHHH
Confidence 9999999996 88889888886 35567788777666553
No 81
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.51 E-value=0.01 Score=74.43 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=80.5
Q ss_pred HHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhHHHHHH
Q 002996 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLCD 84 (860)
Q Consensus 12 ~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-------~~e~~~~l~~ 84 (860)
-+++..+.+++-..|+-+.-++..+ +.+|+....+..-+.+ +.++.+|-.|+.+|-+.. .++-...+-.
T Consensus 19 ~~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 19 DQVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 3445445556666888888888776 4556654455555544 568999999988887532 2333344444
Q ss_pred HHHhhhcCC---------ChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002996 85 PLQRCLKDD---------DPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (860)
Q Consensus 85 ~v~~~l~d~---------~~~VRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i 147 (860)
.+...+.+. +++||.+.+.++..+.+. .|+.-+ ++++.+..+++ .++...-+++.+|..+
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--~ll~~L~~~~~-~~~~~~~~~l~~L~~l 164 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLL 164 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHHc-cChHHHHHHHHHHHHH
Confidence 444444431 589999999999999986 565444 36777777775 4444333334444333
No 82
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.49 E-value=0.0022 Score=72.09 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=137.2
Q ss_pred CCHHHHhHHHHHhcCCC--h---hhhH---HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhh-cc---cccccccHHHHH
Q 002996 58 PNPLIRALAVRTMGCIR--V---DKIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (860)
Q Consensus 58 ~n~~ir~lALr~l~~i~--~---~e~~---~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~-~p---~~~~~~~~~~~l 125 (860)
.++.++-.|..+|.++. . +.++ .-.++.+.++|.+.++.||..|+-++..+-.. ++ +.+.+.+.++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 45667766766666654 1 2222 34589999999999999999999999888653 22 344455788899
Q ss_pred HHhh-cCCChhHHHHHHHHHHHHhhcCCCCchhc--cHHHHHHHHHHhccCC--hh--HHHHHHHHHHhccc---cCHHH
Q 002996 126 KDLI-SDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECT--EW--GQVFILDALSRYKA---ADARE 195 (860)
Q Consensus 126 ~~lL-~D~d~~V~~~al~~l~~i~~~~~~~~~~~--~~~~~~~Ll~~l~~~~--~w--~q~~il~~L~~~~~---~~~~~ 195 (860)
.++| ...++.+..+|+.+|..+..........+ ....+..|+..|...+ +| .+.....+|..+.. .+++.
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 9975 55788999999999988876321111111 2345677777776543 44 34444444443332 33333
Q ss_pred HHH-----HHHHHhhhhcCCChHHHHHH-HHHHHhhhccChHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHHh
Q 002996 196 AEN-----IVERVTPRLQHANCAVVLSA-MILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQ 267 (860)
Q Consensus 196 ~~~-----ll~~v~~~l~~~n~aVv~~a-~~~~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~~ 267 (860)
... .+..+..+|++.+..+.-+| .++..+- ..+++....+.+ .++++|+.+| ++++.+|-.+..+|..|+.
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa-~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH-SSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 332 34566778888777777777 3333331 123444433332 3577899998 5788999999999999998
Q ss_pred hChh
Q 002996 268 RRPT 271 (860)
Q Consensus 268 ~~p~ 271 (860)
.+|.
T Consensus 451 ~~p~ 454 (458)
T 3nmz_A 451 NRPA 454 (458)
T ss_dssp CCSC
T ss_pred CCHh
Confidence 8774
No 83
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.42 E-value=0.25 Score=61.01 Aligned_cols=424 Identities=11% Similarity=0.058 Sum_probs=205.2
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----Chh----h---hHHHHHHHHHh
Q 002996 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD----K---ITEYLCDPLQR 88 (860)
Q Consensus 20 s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i----~~~----e---~~~~l~~~v~~ 88 (860)
+.|-..|+-++-++..+-+. |+--..+..-+.+ -...++.+|-.|+.+|-+. ... + +-+.+...+.+
T Consensus 19 ~sd~~~r~~A~~~L~~~q~s-p~aw~~~~~iL~~-~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~ 96 (980)
T 3ibv_A 19 SVGPIIKQQATDFIGSLRSS-STGWKICHEIFSE-KTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKE 96 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHHS-TTHHHHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-hhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 44789999999999887544 6744444433332 2223889999998887642 222 1 22344444444
Q ss_pred hh-cCCChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCCh-hHHHHHHHHHHHHhhcCCCCc----------
Q 002996 89 CL-KDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEENSSRPI---------- 155 (860)
Q Consensus 89 ~l-~d~~~~VRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~D~d~-~V~~~al~~l~~i~~~~~~~~---------- 155 (860)
.- .+..++||.|.+.++..+++. +|+.-+ ++++.+..++...++ .++...+.+|..|.+.-....
T Consensus 97 ~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp--~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r 174 (980)
T 3ibv_A 97 LSFLDEPAYISNAVQHLLTLLFLQLYPSNWN--DFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQK 174 (980)
T ss_dssp CCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHhCcccCc--hHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhh
Confidence 11 135789999999999999875 576555 377777777764443 344444555553333211000
Q ss_pred ----hhccHHH-----HHHHHHHhcc----CChhHHHHHHHHHHhccccCH-HHH--HHHHHHHhhhhcCCChHHHHHH-
Q 002996 156 ----FEITSHT-----LSKLLTALNE----CTEWGQVFILDALSRYKAADA-REA--ENIVERVTPRLQHANCAVVLSA- 218 (860)
Q Consensus 156 ----~~~~~~~-----~~~Ll~~l~~----~~~w~q~~il~~L~~~~~~~~-~~~--~~ll~~v~~~l~~~n~aVv~~a- 218 (860)
.+..... +...+..|.. .++=....+|++|..|...-+ ... ..+++.+...|.. +.+..+|
T Consensus 175 ~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ 252 (980)
T 3ibv_A 175 DNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAAC 252 (980)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHH
T ss_pred hHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHH
Confidence 0010000 1112222221 244445667777777765422 111 3556666655543 3333333
Q ss_pred -HHHHHhhhccChHHHHHHHHHh--hhHHHhhc--CCChhHH--HHH-----HHHHHHHHhhCh------------hhhh
Q 002996 219 -MILQQMELITSTDVVRNLCKKM--APPLVTLL--SAEPEIQ--YVA-----LRNINLIVQRRP------------TILA 274 (860)
Q Consensus 219 -~~~~~l~~~~~~~~~~~~~~~~--~~~L~~ll--s~~~nir--y~a-----L~~l~~l~~~~p------------~~~~ 274 (860)
++...+..-..++....++..+ .+.+..+. ..|.+.. +.- -..+..+ ...| ..+.
T Consensus 253 ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~ 331 (980)
T 3ibv_A 253 ETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLY 331 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHH
Confidence 2222222222222222222211 11111122 1244431 000 0112222 2233 2222
Q ss_pred ccce-EEEeccCCcHHHHHHHHHHHHHhcC-----------cccHHHHHHHHHH----hhh---h----c----c-----
Q 002996 275 HEIK-VFFCKYNDPIYVKMEKLEIMIKLAS-----------DRNIDQVLLEFKE----YAT---E----V----D----- 322 (860)
Q Consensus 275 ~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~-----------~~Nv~~Iv~eL~~----y~~---~----~----d----- 322 (860)
..+. ++.|..+++..|-..+++.+..... ..-...++..|+. .+. + . |
T Consensus 332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F 411 (980)
T 3ibv_A 332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF 411 (980)
T ss_dssp HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence 3333 3456555555677777766655442 1122334444443 221 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHhhhhhhHHHHHH-------HHHHHHHhCcc----------cH
Q 002996 323 VDFVRKAVRAIGRCAIKLERAAERCIS----VLLELIKIKVNYVVQEAII-------VIKDIFRRYPN----------TY 381 (860)
Q Consensus 323 ~~~~~~~i~~I~~la~k~~~~~~~~v~----~ll~ll~~~~~~v~~e~i~-------~l~~i~~~~p~----------~~ 381 (860)
.+||+++. .+-.++.... .+.+++ .+..++...-..-...-|. .+..+-..-++ ..
T Consensus 412 ~e~Rk~l~-~l~d~~~~l~--~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~l 488 (980)
T 3ibv_A 412 QEMRKKLK-IFQDTINSID--SSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSP 488 (980)
T ss_dssp HHHHHHHH-HHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCB
T ss_pred HHHHHHHH-HHHHHHHhcC--hHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchh
Confidence 13555555 3333222221 234444 5555554321000111233 22222111111 11
Q ss_pred HHHHHHHHHhhc----cCCchHHHHHHHHHHhhcccccCC----HHHHHHHHHh--hCCCCcHHHHHHHHHHHHHHhhcC
Q 002996 382 ESIIATLCESLD----TLDEPEAKASMIWIIGEYAERIDN----ADELLESFLE--SFPEEPAQVQLQLLTATVKLFLKK 451 (860)
Q Consensus 382 ~~~i~~L~~~l~----~~~~~~~~~~~~wilGEy~~~i~~----~~~~l~~~~~--~~~~e~~~v~~~iLta~~Kl~~~~ 451 (860)
..++.-+...++ ...+|.++.+.+|++|.|++.+.. -+.+|..++. .+.+.+..||...-.++.++...+
T Consensus 489 p~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 489 TVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp CHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 133444444332 135788889999999999998753 3567777777 666677889998888888887766
Q ss_pred CC
Q 002996 452 PT 453 (860)
Q Consensus 452 p~ 453 (860)
+.
T Consensus 569 ~~ 570 (980)
T 3ibv_A 569 KK 570 (980)
T ss_dssp TT
T ss_pred hH
Confidence 54
No 84
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.41 E-value=0.021 Score=56.58 Aligned_cols=215 Identities=13% Similarity=0.097 Sum_probs=150.2
Q ss_pred hhHHHhhcC-CChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhh
Q 002996 241 APPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT 319 (860)
Q Consensus 241 ~~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~ 319 (860)
...|..||. +++.+++-+|..|..+....|+... ++ -++.+++.+.+-+.
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~-----------------~~------------~~e~~Ld~iI~llk 85 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLR-----------------MM------------VLERHLDVFINALS 85 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHH-----------------HH------------HHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcccccc-----------------HH------------HHHHHHHHHHHHHh
Confidence 345667774 7889999999999998877654432 11 13556677777777
Q ss_pred hccHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCC
Q 002996 320 EVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 396 (860)
Q Consensus 320 ~~d~~~~~~~i~~I~~la~k~~---~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~ 396 (860)
+.|.-+.-.++++++.+-+..| ..+....+++.++++.+.+-...++...+..+ +--.....++..+...+ ...
T Consensus 86 ~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~sLl-~Sk 162 (265)
T 3b2a_A 86 QENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYINELV-VSP 162 (265)
T ss_dssp STTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHHHH-TCS
T ss_pred ccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHHHHH-hCC
Confidence 8888888899999999888765 45566788888888877777778888877766 33334566777777777 447
Q ss_pred chHHHHHHHHHHhhcccccCC---HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh----ccc
Q 002996 397 EPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN----ATV 469 (860)
Q Consensus 397 ~~~~~~~~~wilGEy~~~i~~---~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~----~~~ 469 (860)
+++.+++.+-.+-|-+....+ ..++++.+-+-...+++.++--.|.++-+++.+--.+...+.+.+++.. ++
T Consensus 163 d~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~- 241 (265)
T 3b2a_A 163 DLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVY- 241 (265)
T ss_dssp SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGG-
T ss_pred ChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHH-
Confidence 888888777777666554432 3455555544455679999999999999998863222255555555543 32
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 002996 470 ETDNPDLRDRAYIYWRLLS 488 (860)
Q Consensus 470 ~s~~~evrdRA~~y~~ll~ 488 (860)
--..|.+|+||+-.-.++.
T Consensus 242 ~~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 242 REGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp CSSCHHHHHHHHHHHHHHH
T ss_pred hcCChhHHHHHHHHHHHHH
Confidence 2356899999987766653
No 85
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.38 E-value=0.042 Score=68.22 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhcCc---ccHHHHHHHHHHhhhh-----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---
Q 002996 289 YVKMEKLEIMIKLASD---RNIDQVLLEFKEYATE-----VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI--- 357 (860)
Q Consensus 289 ~Ik~~~L~lL~~l~~~---~Nv~~Iv~eL~~y~~~-----~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~--- 357 (860)
..|+.+-++|..++.- .-+..+++.+.+.+.. .+..-++.++.++|.+++.........++.++.++..
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~ 515 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc
Confidence 4666667776665543 2334444444444433 4556778889999999987765444455555554421
Q ss_pred --hhhhhHHHHHH---HHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC-----HHHHHHHHHh
Q 002996 358 --KVNYVVQEAII---VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLE 427 (860)
Q Consensus 358 --~~~~v~~e~i~---~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~-----~~~~l~~~~~ 427 (860)
....+...++. ++...+..+|+....++..+++.++ +.+...++|.+..+++.... .+.+++.+.+
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN----SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA 591 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 13445555544 3455555677777788888888773 55667777888777654321 2445555544
Q ss_pred hCCC--CcHHHHHHHHHHHHHHhhcCCCCChHHHHHH----HH---HhcccCCC-ChHHHHHHHHHHHHhc
Q 002996 428 SFPE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQV----VL---NNATVETD-NPDLRDRAYIYWRLLS 488 (860)
Q Consensus 428 ~~~~--e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~----~l---~~~~~~s~-~~evrdRA~~y~~ll~ 488 (860)
-+.. .+...+..++.+++.++...|.++..+.+.. ++ +....... +.+-+..+..+..+|.
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 3333 4678999999999999887663323332222 22 22222222 5556666777776664
No 86
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.38 E-value=0.025 Score=67.99 Aligned_cols=286 Identities=11% Similarity=0.043 Sum_probs=162.2
Q ss_pred cccchHHHhHhcc---CCCcchHHHHHHHHHHhcCCC-CcHHHHHHHHHHhhcC-CC---CHHHHhHHHHHhcCCChhhh
Q 002996 7 VSSLFTDVVNCMQ---TENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQ-DP---NPLIRALAVRTMGCIRVDKI 78 (860)
Q Consensus 7 ~s~~f~~vi~l~~---s~~~~~Krl~Yl~l~~~~~~~-~el~~L~in~l~kDl~-~~---n~~ir~lALr~l~~i~~~e~ 78 (860)
+..++..+-+.+. +++-..|.=+.+++....... .+..-+..+.+..+-. .. ++.+|.-|.-.||-+..-.-
T Consensus 390 ~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 390 LLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp TTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred hHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 3444555555555 455566666666776644333 2434444455554421 11 36777667768887521111
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHH-HhhcCCChhHHHHHHHHHHHHhhcCCCCchh
Q 002996 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK-DLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (860)
Q Consensus 79 ~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~-~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~ 157 (860)
-+.+.+.+++.+.+.++.+|..|++++..+|-=..+. +.++.|. .+..+.+-.|...+...|-.+...++.
T Consensus 470 ~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~----~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---- 541 (963)
T 4ady_A 470 NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP----EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---- 541 (963)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG----
T ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH----
Confidence 1344555677777888899999999999987532211 1333333 344566667777777777766544332
Q ss_pred ccHHHHHHHHHHhc-cCChhHHHHHHHH--HHhccccCHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhc--cChHH
Q 002996 158 ITSHTLSKLLTALN-ECTEWGQVFILDA--LSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELI--TSTDV 232 (860)
Q Consensus 158 ~~~~~~~~Ll~~l~-~~~~w~q~~il~~--L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~--~~~~~ 232 (860)
.+..+++.|. +.+|+..--..-. ++.....+....+.++..+. .+.+.-|.-.|++ ++..+ ..++.
T Consensus 542 ----~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~---~d~~d~VRraAVi--aLGlI~~g~~e~ 612 (963)
T 4ady_A 542 ----LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV---SDSNDDVRRAAVI--ALGFVLLRDYTT 612 (963)
T ss_dssp ----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---HCSCHHHHHHHHH--HHHHHTSSSCSS
T ss_pred ----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc---cCCcHHHHHHHHH--HHHhhccCCHHH
Confidence 1333344443 3455544332222 23344455544455555433 4556666655532 23222 23322
Q ss_pred HHHHHHHhhhHHHhhc--CCChhHHHHHHHHHHHHHhhChh--hhhccceEEEeccCCcHHHHHHHHHHHHHhcCcc---
Q 002996 233 VRNLCKKMAPPLVTLL--SAEPEIQYVALRNINLIVQRRPT--ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDR--- 305 (860)
Q Consensus 233 ~~~~~~~~~~~L~~ll--s~~~niry~aL~~l~~l~~~~p~--~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~--- 305 (860)
++.++.+| +.++.+||-+--+|..+....|. ++. -+. ....|.|..||+-|+.-|-.+.-.+
T Consensus 613 --------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid-~L~--~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 613 --------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAID-VLD--PLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp --------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHH-HHH--HHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred --------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHH-HHH--HHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 33445544 46899999999999999876653 222 111 1145667999999999888887433
Q ss_pred ---cHHHHHHHHHHhhhh
Q 002996 306 ---NIDQVLLEFKEYATE 320 (860)
Q Consensus 306 ---Nv~~Iv~eL~~y~~~ 320 (860)
.+..+++.|..|..+
T Consensus 682 ~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 682 LNPQVADINKNFLSVITN 699 (963)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 377888888888754
No 87
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.02 E-value=0.63 Score=58.92 Aligned_cols=139 Identities=9% Similarity=0.150 Sum_probs=85.8
Q ss_pred CCcccchHHHhHhc---cC--CCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-----
Q 002996 5 KDVSSLFTDVVNCM---QT--ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----- 74 (860)
Q Consensus 5 ~d~s~~f~~vi~l~---~s--~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~----- 74 (860)
.++.....++.+++ -+ .+-..|+-+.-++..+-+ +|+-...+...|. -.+.++.+|-.|+.+|-+..
T Consensus 4 ~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 4 DQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHh-CchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 45555544444433 23 366679999999888644 4453444444443 35678999999987766431
Q ss_pred --hhhhHHHHHHHHHhhhc-------CCChHHHHHHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhHHHHHHHHH
Q 002996 75 --VDKITEYLCDPLQRCLK-------DDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (860)
Q Consensus 75 --~~e~~~~l~~~v~~~l~-------d~~~~VRk~A~~~l~kl~~~-~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l 144 (860)
.++-.+.+-..+.+.+. +..++||.+++.++..+.+. .|+.-+ ++++.+..++.. ++...-.++.+|
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--DMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 23333344444444433 14799999999999999876 365544 377777777765 444455566666
Q ss_pred HHHhh
Q 002996 145 AEIEE 149 (860)
Q Consensus 145 ~~i~~ 149 (860)
..+.+
T Consensus 158 ~~L~E 162 (1204)
T 3a6p_A 158 LRLAE 162 (1204)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.014 Score=60.94 Aligned_cols=182 Identities=14% Similarity=0.111 Sum_probs=113.1
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHhhccccccc-------ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC--c-
Q 002996 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVED-------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP--I- 155 (860)
Q Consensus 86 v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~-------~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~--~- 155 (860)
+..-|.|+++-.|+.|+..+.+++...+..... ..+...+.+.+.|.|..|+..++.++..+...-+.. .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567889999999999999999999865533221 124567788899999999999999998887643211 0
Q ss_pred ---hhccHHHHHHHHHH-hccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH--HHHHHhhhccC
Q 002996 156 ---FEITSHTLSKLLTA-LNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA--MILQQMELITS 229 (860)
Q Consensus 156 ---~~~~~~~~~~Ll~~-l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a--~~~~~l~~~~~ 229 (860)
.......+..|+.. +.+..+-.....++++..+..... ....+++.+.+.+++.|+-|+.++ .+..++.....
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 11122334555544 455555554455555544331110 113567788889999999888877 23333332111
Q ss_pred hH-HHHHHHHHhhhHHHhhc-CCChhHHHHHHHHHHHHHhh
Q 002996 230 TD-VVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR 268 (860)
Q Consensus 230 ~~-~~~~~~~~~~~~L~~ll-s~~~niry~aL~~l~~l~~~ 268 (860)
.. ..+..+..+.+.+..++ ++++++|-.|...+..+...
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 00 11223344566677777 47999999999998887643
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.00 E-value=0.77 Score=57.32 Aligned_cols=159 Identities=9% Similarity=0.058 Sum_probs=88.7
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhh--------hhhh
Q 002996 294 KLEIMIKLASDRNIDQVLLEFKEYAT--EVDVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKIK--------VNYV 362 (860)
Q Consensus 294 ~L~lL~~l~~~~Nv~~Iv~eL~~y~~--~~d~~~~~~~i~~I~~la~k~~~~-~~~~v~~ll~ll~~~--------~~~v 362 (860)
.|+.++.+....-+..+.+.|.+++. ..+..-+..++.++|.++...... ...++..++..+..- ...+
T Consensus 436 ~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~ 515 (1049)
T 3m1i_C 436 VLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV 515 (1049)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence 34444433332223334444445553 245567788899999888765433 223444455444321 1112
Q ss_pred HH-H---HHHHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-------------CHHHHHHHH
Q 002996 363 VQ-E---AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------------NADELLESF 425 (860)
Q Consensus 363 ~~-e---~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-------------~~~~~l~~~ 425 (860)
.. . ++.+....+..+|+....++..+++.+.+ .++.++..++|.+..+++... ..+++++.+
T Consensus 516 v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~-~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l 594 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDI 594 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 21 1 22233455556676667777777777654 357777778888777665432 134555554
Q ss_pred HhhCCCCcHHHHHHHHHHHHHHhhcCCC
Q 002996 426 LESFPEEPAQVQLQLLTATVKLFLKKPT 453 (860)
Q Consensus 426 ~~~~~~e~~~v~~~iLta~~Kl~~~~p~ 453 (860)
..-+...+...+..++.|++.+....|+
T Consensus 595 ~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 595 QKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 4434444566677788888888877763
No 90
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.96 E-value=0.014 Score=63.30 Aligned_cols=197 Identities=11% Similarity=0.122 Sum_probs=133.6
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHH-H-----HHHHHHhhcCCCCHHHHhHHHHHhcCCCh---hhhHH-----HHHHHHH
Q 002996 22 NLELKKLVYLYLINYAKSQPDLAI-L-----AVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKITE-----YLCDPLQ 87 (860)
Q Consensus 22 ~~~~Krl~Yl~l~~~~~~~~el~~-L-----~in~l~kDl~~~n~~ir~lALr~l~~i~~---~e~~~-----~l~~~v~ 87 (860)
+.++|+-+--++.+++..+++.-. + ++..|.+=|.++++.++..|..+|+++.. ++.-. -.++.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 356788888889998876653221 1 37788888999999999887777766642 22222 2367777
Q ss_pred hh-hcCCChHHHHHHHHHHHHHHhhcc----cccccccHHHHHHHhhcCCCh----hHHHHHHHHHHHHhh---cCCCCc
Q 002996 88 RC-LKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNNP----MVVANAVAALAEIEE---NSSRPI 155 (860)
Q Consensus 88 ~~-l~d~~~~VRk~A~~~l~kl~~~~p----~~~~~~~~~~~l~~lL~D~d~----~V~~~al~~l~~i~~---~~~~~~ 155 (860)
++ +.+.++-+++.|+-++..+-..++ .++...+.++.|.++|.+.+. .|+.+|+.+|..++. ..+...
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 76 466889999999999988876332 333245789999999986554 488888888888765 121111
Q ss_pred -hhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHH-----HHHHhhhhcCCChHHHHHH
Q 002996 156 -FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 156 -~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~l-----l~~v~~~l~~~n~aVv~~a 218 (860)
.-.....+..|+..|...++-.+......|..+...+++....+ +..+..+|++.+..+.-+|
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A 325 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 325 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 11123457788888888787788888888888775555544443 4455666777777666555
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.72 E-value=2 Score=53.18 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHhhcCC--CCHHHHhHHHHHhcCCC---hh----hhHHHHHHHHHhhhc-----CCChHHHHHHHHHHHH
Q 002996 42 DLAILAVNTFVKDSQD--PNPLIRALAVRTMGCIR---VD----KITEYLCDPLQRCLK-----DDDPYVRKTAAICVAK 107 (860)
Q Consensus 42 el~~L~in~l~kDl~~--~n~~ir~lALr~l~~i~---~~----e~~~~l~~~v~~~l~-----d~~~~VRk~A~~~l~k 107 (860)
|..-...+.+.+-+.+ .+-..|-.|+-++|+|. .+ ..++.+++.+..++. |..+.||.+++.++.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 5555566777776665 45667777777777664 22 345667777777776 4677889999999988
Q ss_pred HHh---hcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 108 LYD---INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 108 l~~---~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
..+ .+|+.++. .++.|-+.+.|++++|..+|+.++..|++.
T Consensus 527 y~~wl~~~~~~L~~--vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 527 YPRFLKAHWNFLRT--VILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp CHHHHHHCHHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHH--HHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 655 46666553 666677777888999999999999999875
No 92
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.69 E-value=1 Score=49.50 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=107.0
Q ss_pred hHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhh
Q 002996 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (860)
Q Consensus 11 f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l 90 (860)
|-.++..... +...|||+--++..|++.-|++.--++|++..=+.|.+..||--|+|.|..++..+.+.-+.+-+.++|
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 4555555444 589999999999999999999999999999999999999999999999999997788999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 91 ~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
...++--+...=-++..+++.+|...- ......+.. .+..|.--++..|.+-...
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~tl----~~lf~~i~~-~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGTL----GGLFSQILQ-GEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHH-SCHHHHHHHHHHHHHHGGG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHHH----HHHHHHHcc-cchHHHHHHHHHHHHHHhh
Confidence 998888887777788888888886432 222222332 3567777777777664443
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.011 Score=61.77 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=98.2
Q ss_pred CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcH---------HHHHHHHHHhhcCCCCHHHHhHHHHHhc
Q 002996 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL---------AILAVNTFVKDSQDPNPLIRALAVRTMG 71 (860)
Q Consensus 1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el---------~~L~in~l~kDl~~~n~~ir~lALr~l~ 71 (860)
|+-+.|..+-=...-.-+.|++-..|+=||-.+...+...+.. ..-....+.|-+.|.|..+...|+.+++
T Consensus 1 m~~~e~~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~ 80 (278)
T 4ffb_C 1 MSGEEEVDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALN 80 (278)
T ss_dssp ----------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCCcchhhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5555544432111336789999999999999998876543321 1123456788999999999999988876
Q ss_pred CCC------------hhhhHHHHHHHHH-hhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHH
Q 002996 72 CIR------------VDKITEYLCDPLQ-RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (860)
Q Consensus 72 ~i~------------~~e~~~~l~~~v~-~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~ 138 (860)
.+. ....+..+++.+. +++.|..+-+|..|..|+..+.......- .+.+.+...+..++|.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~---~~~e~l~~~l~~Knpkv~~ 157 (278)
T 4ffb_C 81 SLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT---QSVELVIPFFEKKLPKLIA 157 (278)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH---HHHHHHGGGGGCSCHHHHH
T ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhccCHHHHH
Confidence 431 1123455556554 67899999999999999998876543211 2567888889999999999
Q ss_pred HHHHHHHHHhhc
Q 002996 139 NAVAALAEIEEN 150 (860)
Q Consensus 139 ~al~~l~~i~~~ 150 (860)
.++..|..+...
T Consensus 158 ~~l~~l~~~l~~ 169 (278)
T 4ffb_C 158 AAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888776543
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.57 E-value=1.3 Score=54.49 Aligned_cols=414 Identities=13% Similarity=0.130 Sum_probs=196.9
Q ss_pred CCHHHHhHHHHHhcCCCh-hhhHHHHHHHHHhhhcCC---ChHHHHHHHHHHHHHHhh-ccc----ccccccHHHHHHHh
Q 002996 58 PNPLIRALAVRTMGCIRV-DKITEYLCDPLQRCLKDD---DPYVRKTAAICVAKLYDI-NAE----LVEDRGFLESLKDL 128 (860)
Q Consensus 58 ~n~~ir~lALr~l~~i~~-~e~~~~l~~~v~~~l~d~---~~~VRk~A~~~l~kl~~~-~p~----~~~~~~~~~~l~~l 128 (860)
+++..|.-|...|-.+.. ++-... ...++.++ ++.||=-|+..+-...+. .++ .. ..+.+.+..+
T Consensus 20 sd~~~r~~A~~~L~~~q~sp~aw~~----~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~--~~lr~~ll~~ 93 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSSTGWKI----CHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL--QMIRDSVWSY 93 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHH----HHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChhHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH--HHHHHHHHHH
Confidence 378889999999988763 443333 34445443 799999999998877763 223 11 1244455555
Q ss_pred hcC-----CChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCCh-hHHHHHHHHHHhcc--------ccCHH
Q 002996 129 ISD-----NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTE-WGQVFILDALSRYK--------AADAR 194 (860)
Q Consensus 129 L~D-----~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-w~q~~il~~L~~~~--------~~~~~ 194 (860)
+.. ..+.|..-...++..|.....+..|. ..+..|+..+...++ .....+|++|.... +.+.+
T Consensus 94 l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp---~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~ 170 (980)
T 3ibv_A 94 IKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWN---DFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDV 170 (980)
T ss_dssp HHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT---THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCc---hHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHH
Confidence 432 23455555555666776665444454 245555555543333 56667788877221 11111
Q ss_pred H---------------HHHHHHHHhhhh----cCCChHHHHHH--HHHHHhhhccChHHHHHHHHHhhhHHHhhcCCChh
Q 002996 195 E---------------AENIVERVTPRL----QHANCAVVLSA--MILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPE 253 (860)
Q Consensus 195 ~---------------~~~ll~~v~~~l----~~~n~aVv~~a--~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls~~~n 253 (860)
+ ...+.+.+...| ++.++.++-.+ ++-.++..+ ....+- -..+.+.+..+++ +++
T Consensus 171 ~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~--~~~ll~~l~~~L~-~~~ 246 (980)
T 3ibv_A 171 QIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIV--NEPCMNLLYSFLQ-IEE 246 (980)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHH--CHHHHHHHHHHTT-SHH
T ss_pred HHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhh--cchHHHHHHHHcC-ChH
Confidence 0 011122222233 33555543333 223333322 222111 0233444555554 489
Q ss_pred HHHHHHHHHHHHHhhChh------hhh-----ccceEEEeccCCcHHHHHHHHHHHHHhc-------Cc-----------
Q 002996 254 IQYVALRNINLIVQRRPT------ILA-----HEIKVFFCKYNDPIYVKMEKLEIMIKLA-------SD----------- 304 (860)
Q Consensus 254 iry~aL~~l~~l~~~~p~------~~~-----~~~~~~~~l~~d~~~Ik~~~L~lL~~l~-------~~----------- 304 (860)
+|-.|+++|..|+.+... ++. +.+... ...++|..+...--+++..++ +.
T Consensus 247 ~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l-~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~ 325 (980)
T 3ibv_A 247 LRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKS-QEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKEN 325 (980)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhh
Confidence 999999999999987532 111 111111 011344444332222332221 11
Q ss_pred --ccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHhhhhh------------
Q 002996 305 --RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL---------ERAAERCISVLLELIKIKVNY------------ 361 (860)
Q Consensus 305 --~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~---------~~~~~~~v~~ll~ll~~~~~~------------ 361 (860)
..+..+++-++.+....++++...++.-...+.... ......++..++..+-.+-.|
T Consensus 326 ~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ 405 (980)
T 3ibv_A 326 CSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDS 405 (980)
T ss_dssp HHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccch
Confidence 334556666677776666666554443333333211 111122233333322211110
Q ss_pred --------hHHHHHHHHHHHHH-hCcccHHH----HHHHHH-HhhccC--CchHHHHHHHHHHhhcccccCC--------
Q 002996 362 --------VVQEAIIVIKDIFR-RYPNTYES----IIATLC-ESLDTL--DEPEAKASMIWIIGEYAERIDN-------- 417 (860)
Q Consensus 362 --------v~~e~i~~l~~i~~-~~p~~~~~----~i~~L~-~~l~~~--~~~~~~~~~~wilGEy~~~i~~-------- 417 (860)
.+.++- .+.+.+. -.|+..-. .+..++ +.+..- ...+-.+++++.+|-+|+-+.+
T Consensus 406 ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~ 484 (980)
T 3ibv_A 406 EEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEV 484 (980)
T ss_dssp STHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSS
T ss_pred hHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcc
Confidence 111111 2222222 13433222 222111 112100 1233467788887777776542
Q ss_pred ---HHHHHHHHHhh----CC-CCcHHHHHHHHHHHHHH---hhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 002996 418 ---ADELLESFLES----FP-EEPAQVQLQLLTATVKL---FLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRL 486 (860)
Q Consensus 418 ---~~~~l~~~~~~----~~-~e~~~v~~~iLta~~Kl---~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~l 486 (860)
.+.+++.+..- +. ..++.||.....++.+. +.+.|+- ..+.+..++......+.+..||.||....+=
T Consensus 485 ~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~-l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~ 563 (980)
T 3ibv_A 485 DKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAA-IPALIEYFVGPRGIHNTNERVRPRAWYLFYR 563 (980)
T ss_dssp SCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTT-HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHhccccccCCChhHHHHHHHHHHH
Confidence 23444433322 22 46799999888777775 4445532 4555666555111235678899999765543
Q ss_pred h
Q 002996 487 L 487 (860)
Q Consensus 487 l 487 (860)
+
T Consensus 564 f 564 (980)
T 3ibv_A 564 F 564 (980)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.51 E-value=0.18 Score=57.83 Aligned_cols=253 Identities=15% Similarity=0.138 Sum_probs=153.5
Q ss_pred hccCCCcchHHHHHHHHHHhcCCCCcH-----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh--------------
Q 002996 17 CMQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-------------- 77 (860)
Q Consensus 17 l~~s~~~~~Krl~Yl~l~~~~~~~~el-----~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e-------------- 77 (860)
+-.+.-++.||=+-+.+.-+++..++. +--.+++|++|-. |..+...+|.+|.++-.++
T Consensus 30 l~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~ 107 (651)
T 3grl_A 30 VASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSE 107 (651)
T ss_dssp HHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------
T ss_pred HhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 445677899999999999999988774 4557889999964 4455566898886542211
Q ss_pred -----hH------HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc-----cccHHHHHHHhhcCCChhHHHHHH
Q 002996 78 -----IT------EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-----DRGFLESLKDLISDNNPMVVANAV 141 (860)
Q Consensus 78 -----~~------~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~-----~~~~~~~l~~lL~D~d~~V~~~al 141 (860)
.+ +.-++.+..+|.+.+-|||-.|+.++-.+....|+.+. .+.=++.|..+|+|+.-.+...|+
T Consensus 108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneal 187 (651)
T 3grl_A 108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGV 187 (651)
T ss_dssp CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHH
Confidence 11 23367778889999999999999999999988887433 235678999999998888888899
Q ss_pred HHHHHHhhcCCCC-chhccHHHHHHHHHHhccCCh----hHHHHHHHHHHhccccCHH---HHH--HHHHHHhhhhcCCC
Q 002996 142 AALAEIEENSSRP-IFEITSHTLSKLLTALNECTE----WGQVFILDALSRYKAADAR---EAE--NIVERVTPRLQHAN 211 (860)
Q Consensus 142 ~~l~~i~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~----w~q~~il~~L~~~~~~~~~---~~~--~ll~~v~~~l~~~n 211 (860)
.+|.++.++++.- .+-.....+.+|++.+..-.. -..--+|.++..+...++. -.. ..+..+.++++...
T Consensus 188 lLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~ 267 (651)
T 3grl_A 188 LLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD 267 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCS
T ss_pred HHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCc
Confidence 9999998876421 011112345666666543211 1122233333333333321 111 12335555554322
Q ss_pred hH------HHHHH-HHHHHhhhccCh--------HHHHHHHH-HhhhHHHhhc-CC--ChhHHHHHHHHHHHHHhhChh
Q 002996 212 CA------VVLSA-MILQQMELITST--------DVVRNLCK-KMAPPLVTLL-SA--EPEIQYVALRNINLIVQRRPT 271 (860)
Q Consensus 212 ~a------Vv~~a-~~~~~l~~~~~~--------~~~~~~~~-~~~~~L~~ll-s~--~~niry~aL~~l~~l~~~~p~ 271 (860)
.. .+-+. ..+..++....+ .-...+.+ .+...|++++ +. ...++-.++.++..+...+|.
T Consensus 268 ~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~ 346 (651)
T 3grl_A 268 ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346 (651)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 10 11111 112222222122 11111111 2345677775 33 557999999999999887774
No 96
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.46 E-value=1.3 Score=50.96 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=109.5
Q ss_pred HhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhh-cC-CChhHHHHHHHHHHHHhhcCCC-----------
Q 002996 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SD-NNPMVVANAVAALAEIEENSSR----------- 153 (860)
Q Consensus 87 ~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL-~D-~d~~V~~~al~~l~~i~~~~~~----------- 153 (860)
-|+-...-.-=||.|+.++-.+-+.+|+.+-..++ +.+...| +| .|..++..++-.|..+...+..
T Consensus 28 ~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l-~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~ 106 (651)
T 3grl_A 28 DRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAM-EHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQS 106 (651)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTH-HHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------------
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhH-HHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccc
Confidence 33334566677999999999999999988765344 4444555 45 5777777777777554322111
Q ss_pred -C-------chhccHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHH-H------HHHHhhhhcCCChHHHHHH
Q 002996 154 -P-------IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-I------VERVTPRLQHANCAVVLSA 218 (860)
Q Consensus 154 -~-------~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~-l------l~~v~~~l~~~n~aVv~~a 218 (860)
+ .|---+..+.-|++.|...+.|.....+++|..++...+++..+ + +..+...|......+.-+|
T Consensus 107 ~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRnea 186 (651)
T 3grl_A 107 EDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDG 186 (651)
T ss_dssp -CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHH
T ss_pred hHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHH
Confidence 0 11122456778888888889999999999998887666654433 2 3456677777777777777
Q ss_pred -HHHHHhhhccChHHHHHH-HHHhhhHHHhhcCCC-----hhHHHHHHHHHHHHHhhCh
Q 002996 219 -MILQQMELITSTDVVRNL-CKKMAPPLVTLLSAE-----PEIQYVALRNINLIVQRRP 270 (860)
Q Consensus 219 -~~~~~l~~~~~~~~~~~~-~~~~~~~L~~lls~~-----~niry~aL~~l~~l~~~~p 270 (860)
.++..+-. .+++..+-+ .+.+.+.|..++..+ ..+.-=.|..|..|++.++
T Consensus 187 llLL~~Lt~-~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 187 VLLLQALTR-SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc-CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 33333311 133332222 224556666666322 1333344555566666665
No 97
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.03 Score=50.39 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=59.0
Q ss_pred CCeEEEEEEEeeC-CeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCC-CccCCC--CeeeEEEeeeecCCCCCC
Q 002996 643 QGLQIGAELTRQD-GQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPG--TSGRTLLPMVLFQNMSAG 718 (860)
Q Consensus 643 ~gl~I~~~~~~~~-~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~-~~l~pg--~~~~~~v~i~~~~~~~~~ 718 (860)
+||+|.+.+.+.+ +.+.+.++|+|++..++++|.+|.--+. +++..-.++. ..|+|+ ..+.|.+.|.-.......
T Consensus 17 ~~l~I~~~~~~~~~~~~~i~~~fsN~s~~~it~f~fqaAVPK-s~kL~L~p~Sg~~L~p~~~~~itQ~~~I~n~~~~~~~ 95 (123)
T 3mnm_A 17 PNLKIEFEISRESNSVIRIXSFFTNLSSSPISNLVFLLAVPK-SMSLXLQPQSSNFMIGNAKDGISQEGTIENAPANPSK 95 (123)
T ss_dssp SSEEEEEEEEECSSSCEEEEEEEEECSSSCEEEEEEEEECCT-TSEEEECCCSCSCBCTTCTTCEEEEEEEESCCCC---
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCCccccEEEEEecCc-ccEEEeECCCcCccCCCCCCCEEEEEEEecCCCCCCC
Confidence 7899999999965 4578999999999999999999997543 4444444433 378887 567777776422111122
Q ss_pred CCCcceEEEEec
Q 002996 719 PPSSLLQVAVKN 730 (860)
Q Consensus 719 ~~~~~l~~~~~~ 730 (860)
+..+.+++.|+-
T Consensus 96 ~lklR~klsY~~ 107 (123)
T 3mnm_A 96 ALXVKWKVNYSV 107 (123)
T ss_dssp CCEEEEEEEEEE
T ss_pred CEEEEEEEEEEE
Confidence 444566666653
No 98
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.24 E-value=1.9 Score=47.68 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhh--hhHHHHHHHH-HHHHHhhhhhhHHHHHH-HHHHHHHhCcccHHHHHHHHHHhhcc--
Q 002996 321 VDVDFVRKAVRAIGRCAIKLE--RAAERCISVL-LELIKIKVNYVVQEAII-VIKDIFRRYPNTYESIIATLCESLDT-- 394 (860)
Q Consensus 321 ~d~~~~~~~i~~I~~la~k~~--~~~~~~v~~l-l~ll~~~~~~v~~e~i~-~l~~i~~~~p~~~~~~i~~L~~~l~~-- 394 (860)
.|.|+..++-.--..+.+.+. +..+.|..-+ -..|+-+.-|-.+.-|. ....+ .+-.-.++.+|++.|+.
T Consensus 333 ~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf----~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 333 SDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF----KKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG----SSGGGHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHH----HhcchHHHHHHHHHHhhhc
Confidence 577776655433333343332 2334444322 23333334455555665 22222 22223567788888863
Q ss_pred -------CCchHHHHHHHHHHhhcccccCCHHHHHHHH------HhhCCCCcHHHHHHHHHHHHHHhh
Q 002996 395 -------LDEPEAKASMIWIIGEYAERIDNADELLESF------LESFPEEPAQVQLQLLTATVKLFL 449 (860)
Q Consensus 395 -------~~~~~~~~~~~wilGEy~~~i~~~~~~l~~~------~~~~~~e~~~v~~~iLta~~Kl~~ 449 (860)
-.+|...+++++=+|||..+.++...+++.+ .+-...++++||...|.|+-|+-.
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2367778999999999999988877776653 344567889999999999888754
No 99
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=96.09 E-value=0.039 Score=51.26 Aligned_cols=85 Identities=11% Similarity=0.086 Sum_probs=58.0
Q ss_pred CCeEEEEEEEee---CCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCC-CccCCCC--eeeEEEeeeecCCCC
Q 002996 643 QGLQIGAELTRQ---DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGT--SGRTLLPMVLFQNMS 716 (860)
Q Consensus 643 ~gl~I~~~~~~~---~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~-~~l~pg~--~~~~~v~i~~~~~~~ 716 (860)
+||+|.+.+.|. ++...+.++|+|++..++++|.+|.--+. +++.+-.++. ..|+|++ .+++.+.|.-..
T Consensus 37 ~~l~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPK-~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~--- 112 (146)
T 1iu1_A 37 NGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPK-TFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQ--- 112 (146)
T ss_dssp TTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCT-TSEEEECCCSCSCBCGGGCCCEEEEEEEECTT---
T ss_pred CCEEEEEEEEcCCCCCCEEEEEEEEEeCCCCccccEEEEEEcCc-ccEEEeeCCCCCccCCCCCCCEEEEEEEeCCC---
Confidence 789999999985 34578999999999999999999997543 4544444433 3787743 467776664321
Q ss_pred CCCCCcceEEEEecC
Q 002996 717 AGPPSSLLQVAVKNN 731 (860)
Q Consensus 717 ~~~~~~~l~~~~~~~ 731 (860)
..+..+++++.|+-+
T Consensus 113 ~~~lklR~klsY~~~ 127 (146)
T 1iu1_A 113 KQQLRMRIKLTYNHK 127 (146)
T ss_dssp CCCCCCEEEEEEEET
T ss_pred CCCEEEEEEEEEEEC
Confidence 123445666666543
No 100
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.07 E-value=0.72 Score=47.04 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=70.7
Q ss_pred HHhHHHHHhcC---CChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHH
Q 002996 62 IRALAVRTMGC---IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (860)
Q Consensus 62 ir~lALr~l~~---i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~ 138 (860)
.+...|+.+-. -..|++.+.+++.+.....|++..|||-.+--+...++..+++... .++.|..+|+|.|+.|+-
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~--~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH--VINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHHHH
Confidence 55555554443 2478899999999999988999999999999999999999998874 889999999999999998
Q ss_pred HHHHHHHHH
Q 002996 139 NAVAALAEI 147 (860)
Q Consensus 139 ~al~~l~~i 147 (860)
.++.+...+
T Consensus 109 ~~I~~~~~i 117 (257)
T 3gs3_A 109 RVIQACGSI 117 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776665
No 101
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=96.04 E-value=0.036 Score=49.87 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=59.6
Q ss_pred CCeEEEEEEEeeC---CeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCC-CccCC--CCeeeEEEeeeecCCCC
Q 002996 643 QGLQIGAELTRQD---GQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQP--GTSGRTLLPMVLFQNMS 716 (860)
Q Consensus 643 ~gl~I~~~~~~~~---~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~-~~l~p--g~~~~~~v~i~~~~~~~ 716 (860)
+||+|.+.+.|.+ +.+.+.++|+|++..+|++|.+|.--+. +++.+-.++. ..|+| +..++|.+.|.-. .
T Consensus 13 ~~l~I~~~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fqaAVPK-s~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~--~- 88 (122)
T 3zy7_A 13 LGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPK-TFQLQLLSPSSSVVPAFNTGTITQVIKVLNP--Q- 88 (122)
T ss_dssp TTEEEEEEEECC----CEEEEEEEEEECSSSCBEEEEEEEECCT-TSEEEECCCSCSCBCGGGSCCEEEEEEEECT--T-
T ss_pred CCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCc-ccEEEecCCCCCccCCCCCCCEEEEEEEECC--C-
Confidence 7899999999963 4589999999999999999999987543 4444444443 37888 7778888877522 1
Q ss_pred CCCCCcceEEEEec
Q 002996 717 AGPPSSLLQVAVKN 730 (860)
Q Consensus 717 ~~~~~~~l~~~~~~ 730 (860)
..+..+.+++.|+-
T Consensus 89 ~~~lklR~klsY~~ 102 (122)
T 3zy7_A 89 KQQLRMRIKLTFNW 102 (122)
T ss_dssp CCCCCEEEEEEEEE
T ss_pred CCCEEEEEEEEEEE
Confidence 22444566666653
No 102
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.63 E-value=0.069 Score=48.65 Aligned_cols=85 Identities=12% Similarity=0.148 Sum_probs=57.3
Q ss_pred CCeEEEEEEEee---CCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCC-CccCCCCe--eeEEEeeeecCCCC
Q 002996 643 QGLQIGAELTRQ---DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTS--GRTLLPMVLFQNMS 716 (860)
Q Consensus 643 ~gl~I~~~~~~~---~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~-~~l~pg~~--~~~~v~i~~~~~~~ 716 (860)
+||+|.+.+.+. ++.+.+.++|+|++..+|++|.+|.--+. +++.+-.++. ..|+|++. ++|.+.|. ++ .
T Consensus 22 ~~l~I~f~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fQaAVPK-~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~--n~-~ 97 (131)
T 2e9g_A 22 EGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPK-SLQLQLQAPSGNTVPARGGLPITQLFRIL--NP-N 97 (131)
T ss_dssp SSEEEEEEEECCSSCTTEEEEEEEEEECSSSCEEEEEEEEECCT-TSCCEECCCSCSEECTTTCCCBCCCEEEE--CT-T
T ss_pred CCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCc-ccEEEeeCCCCCCcCCCCCCCEEEEEEEe--CC-C
Confidence 789999999984 35678999999999999999999987543 4444444433 47887543 56666553 22 1
Q ss_pred CCCCCcceEEEEecC
Q 002996 717 AGPPSSLLQVAVKNN 731 (860)
Q Consensus 717 ~~~~~~~l~~~~~~~ 731 (860)
..+..+.+++.|+-+
T Consensus 98 ~~~l~lR~klsY~~~ 112 (131)
T 2e9g_A 98 KAPLRLKLRLTYDHF 112 (131)
T ss_dssp CCCCCEEEEEEEECS
T ss_pred CCCEEEEEEEEEEEC
Confidence 224445666666543
No 103
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.57 E-value=1.2 Score=48.86 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHHHHHhhChhhhhccce-EEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHH
Q 002996 250 AEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRK 328 (860)
Q Consensus 250 ~~~niry~aL~~l~~l~~~~p~~~~~~~~-~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~ 328 (860)
.++..+-+|-+.|.+....+|++-..-+. .+....++|..||..|+.-|..+|..+++..|.+-|.+.+...|..=...
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~ 119 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNL 119 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHHHHH
Confidence 45566666666666666666665443332 23334578899999999999999999999999999999887655332222
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC------cccHHHHHHHHHHhhccCCc
Q 002996 329 AVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY------PNTYESIIATLCESLDTLDE 397 (860)
Q Consensus 329 ~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~------p~~~~~~i~~L~~~l~~~~~ 397 (860)
+=.++-.+- -.++...+..++.-+..+.+.+++.++..|+.-+..- .+..+.++..+.+.|++++.
T Consensus 120 V~~sL~sll---k~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 120 VNNALLSIF---KMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHH---HHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHH---hcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 222222222 2234455555666666555666666666665554431 23344455555555555443
No 104
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.20 E-value=0.9 Score=49.09 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=71.1
Q ss_pred HHhHHHHHhcCC---ChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHH
Q 002996 62 IRALAVRTMGCI---RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (860)
Q Consensus 62 ir~lALr~l~~i---~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~ 138 (860)
.+...|+-+-.+ ..|++.+.+++.|.....|.+..|||-.+--+...++.+++.+.. .++.|..||+|.|+.|+-
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~--~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK--LIANLNMLLRDENVNVVK 118 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHHHH
Confidence 455556655553 568899999999999999999999999999999999999998864 889999999999999998
Q ss_pred HHHHHHHHH
Q 002996 139 NAVAALAEI 147 (860)
Q Consensus 139 ~al~~l~~i 147 (860)
.++.+...+
T Consensus 119 ~~I~~~tsl 127 (386)
T 3o2t_A 119 KAILTMTQL 127 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776665
No 105
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.15 E-value=9 Score=47.28 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHhhhh--ccHHHHHHHHHHHHHHHHhhhhh-H----HHHHHHHHHHHHhh-----hh
Q 002996 293 EKLEIMIKLASDRNIDQVLLEFKEYATE--VDVDFVRKAVRAIGRCAIKLERA-A----ERCISVLLELIKIK-----VN 360 (860)
Q Consensus 293 ~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~--~d~~~~~~~i~~I~~la~k~~~~-~----~~~v~~ll~ll~~~-----~~ 360 (860)
..|..++.+...+-+..+++.|.+.+.. .+-..++.++-++|.++....+. . ...+..|+.+.... ..
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~ 514 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKA 514 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchH
Confidence 5555555555555555566666666543 56778889999999988765432 2 24555666666531 11
Q ss_pred hhHHHH-H--HHHHHHHHhCcccHHHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-------------CHHHHHHH
Q 002996 361 YVVQEA-I--IVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------------NADELLES 424 (860)
Q Consensus 361 ~v~~e~-i--~~l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~-------------~~~~~l~~ 424 (860)
.+.+.+ | .+..+.+..+|+.-..++..|++.+.+ .+|....+++|.+-..++.+. -...+++.
T Consensus 515 ~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~-~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~ 593 (1023)
T 4hat_C 515 VVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD 593 (1023)
T ss_dssp HHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence 222222 1 133445556677677778888777643 346666667777655444321 12344444
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHHhhcCCCC
Q 002996 425 FLESFPEEPAQVQLQLLTATVKLFLKKPTE 454 (860)
Q Consensus 425 ~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~ 454 (860)
+...+..-+...+..+..|++.+....|.+
T Consensus 594 l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 594 IQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 444333446666778888888888887753
No 106
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=95.01 E-value=0.15 Score=46.91 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=57.6
Q ss_pred CCeEEEEEEEee---CCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCC-CccCCC--CeeeEEEeeeecCCCC
Q 002996 643 QGLQIGAELTRQ---DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPG--TSGRTLLPMVLFQNMS 716 (860)
Q Consensus 643 ~gl~I~~~~~~~---~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~-~~l~pg--~~~~~~v~i~~~~~~~ 716 (860)
+||+|.+.+.+. ++.+.+.++|+|++..+|++|.+|.--+. +++.+-.++. ..|+|+ ..++|.+.|.-..
T Consensus 31 n~L~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPK-s~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~--- 106 (140)
T 1gyu_A 31 NGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPK-TFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ--- 106 (140)
T ss_dssp TTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCT-TCEEEECCCSCSCBCGGGCCCEEEEEEEECTT---
T ss_pred CCEEEEEEEEcCCCCCCEEEEEEEEEECCCCccccEEEEEEcCc-ccEEEeeCCCCCccCCCCCCCEEEEEEEeCCC---
Confidence 789999999985 35678999999999999999999997543 4555444433 378773 3467776664321
Q ss_pred CCCCCcceEEEEecC
Q 002996 717 AGPPSSLLQVAVKNN 731 (860)
Q Consensus 717 ~~~~~~~l~~~~~~~ 731 (860)
..+..+.+++.|+-+
T Consensus 107 ~~~l~LR~klsY~~~ 121 (140)
T 1gyu_A 107 KQQLRMRIKLTYNHK 121 (140)
T ss_dssp CCCCCEEEEEEEEET
T ss_pred CCCEEEEEEEEEEEC
Confidence 123445566666543
No 107
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.00 E-value=0.39 Score=49.26 Aligned_cols=182 Identities=13% Similarity=0.034 Sum_probs=111.2
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHH----HHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL----KDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 79 ~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l----~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
...+-+++...+.+++.--|-+|+-.+.+....+|+.+.. .++.+ .-.+.|+|+.|...++-+|..+...-...
T Consensus 44 ~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 44 GNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp HTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3344456677788888888888888888888777755432 22333 33456999999999988887764321000
Q ss_pred chhc----cHHHHHHHHHHhccCChhHHHH---HHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH--HHHHHhh
Q 002996 155 IFEI----TSHTLSKLLTALNECTEWGQVF---ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA--MILQQME 225 (860)
Q Consensus 155 ~~~~----~~~~~~~Ll~~l~~~~~w~q~~---il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a--~~~~~l~ 225 (860)
.+.+ ....++.|+..+.+..+=..-. +++.+....| ...+.+.+...++|.|+=+..++ .+...++
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 0111 1345688888887765443333 3333333222 23567777778899998677666 2223332
Q ss_pred hccChHHHHHHHHHhh---hHHHhhcC-CChhHHHHHHHHHHHHHhhChhhh
Q 002996 226 LITSTDVVRNLCKKMA---PPLVTLLS-AEPEIQYVALRNINLIVQRRPTIL 273 (860)
Q Consensus 226 ~~~~~~~~~~~~~~~~---~~L~~lls-~~~niry~aL~~l~~l~~~~p~~~ 273 (860)
..... ..+.. +.+..+++ +++++|-.|++++..+-..-.+-+
T Consensus 197 ~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 197 NAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred hcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 22211 11234 66778884 788999999999987765544433
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.74 E-value=0.7 Score=46.08 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=100.0
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHh-hhcCCChHHHHHHHHHHHHHHh-hcccccccccHHHHHHHh
Q 002996 51 FVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQR-CLKDDDPYVRKTAAICVAKLYD-INAELVEDRGFLESLKDL 128 (860)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~-~l~d~~~~VRk~A~~~l~kl~~-~~p~~~~~~~~~~~l~~l 128 (860)
++.=.+|+...+|++|...|+.. . . .+.+.+.++. ...|.+..||-.++.++.++.. .+|+. .++.+...
T Consensus 76 a~~L~~~~~deVR~~Av~lLg~~-~-~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-----~l~~~~~W 147 (240)
T 3l9t_A 76 AFLAYQSDVYQVRMYAVFLFGYL-S-K-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-----ALPIIDEW 147 (240)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHT-T-T-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----THHHHHHH
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-c-C-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----HHHHHHHH
Confidence 33444677789999999999988 3 2 3678888887 7789999999999999999996 88874 45678889
Q ss_pred hcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHh-ccCChhHHHHHHHHHHhccccCHHHHHHHH
Q 002996 129 ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAENIV 200 (860)
Q Consensus 129 L~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l-~~~~~w~q~~il~~L~~~~~~~~~~~~~ll 200 (860)
+.|.|+-|...|+-.+.--+.. + .+...+..+-.++..+ .|.+.+.|-.+=.-|..|.+.+|+-...++
T Consensus 148 ~~d~n~~VRR~Ase~~rpW~~~-~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 148 LKSSNLHTRRAATEGLRIWTNR-P--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHCSSHHHHHHHHHHTCSGGGS-T--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHhhHHHhcc-c--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 9999999988775543221111 1 1233344444555544 567888888888888888888876555444
No 109
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.53 E-value=1.8 Score=52.56 Aligned_cols=217 Identities=17% Similarity=0.214 Sum_probs=150.2
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHH---hcCCChhhhHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHHhhccccccc--cc
Q 002996 47 AVNTFVKDSQDPNPLIRALAVRT---MGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAELVED--RG 120 (860)
Q Consensus 47 ~in~l~kDl~~~n~~ir~lALr~---l~~i~~~e~~~~l~~~v~~~l~d~-~~~VRk~A~~~l~kl~~~~p~~~~~--~~ 120 (860)
..+.+..-+.|++..||..|-.+ +....+++-+..+.|.+...+.+. .+-.|-.|+-++-++....|+.+.. .+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 35777788899999999876554 444456777789999999999765 6888888888888888888877642 25
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHh--ccc-cCHHHHH
Q 002996 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR--YKA-ADAREAE 197 (860)
Q Consensus 121 ~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~--~~~-~~~~~~~ 197 (860)
++|.+.+.+-|.-+.|-.+|..++..++.--.. .+ +.+.+..|++++.++++ .-..++.|.. |.. -+.....
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n--~d-~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDN--KD-IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC--TT-TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC--cc-hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH
Confidence 788889999999999999999999988764221 11 12457888899888766 4455666653 322 1333333
Q ss_pred HHHHHHhhhhcCCChHHHHHH-HHHHHh-hhccChHHHHHHHHHhhhHHHhhcC--CChhHHHHHHHHHHHHHhh
Q 002996 198 NIVERVTPRLQHANCAVVLSA-MILQQM-ELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQR 268 (860)
Q Consensus 198 ~ll~~v~~~l~~~n~aVv~~a-~~~~~l-~~~~~~~~~~~~~~~~~~~L~~lls--~~~niry~aL~~l~~l~~~ 268 (860)
-+...+...|..+..++.-.+ +++..| +.+.+|......+.++.|.|-+... ++||.|-++-+++..|...
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 444455556666666654333 444444 3445666666666666777777663 7999999999888887653
No 110
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.50 E-value=1.3 Score=54.94 Aligned_cols=142 Identities=10% Similarity=0.130 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcCCCC--HHH---HhHHHHHh-cCCCh---hhhHHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHHh
Q 002996 45 ILAVNTFVKDSQDPN--PLI---RALAVRTM-GCIRV---DKITEYLCDPLQRCLKDD-----DPYVRKTAAICVAKLYD 110 (860)
Q Consensus 45 ~L~in~l~kDl~~~n--~~i---r~lALr~l-~~i~~---~e~~~~l~~~v~~~l~d~-----~~~VRk~A~~~l~kl~~ 110 (860)
-.....+++-+.+++ -.. -+.|+++| +++.. ...++.+++.+..+..++ .+.||...+..+.+.-+
T Consensus 476 ~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~ 555 (1073)
T 3gjx_A 476 IIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPR 555 (1073)
T ss_dssp HHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHH
Confidence 334455666554432 333 35666776 33332 245666777777666554 35566656566766443
Q ss_pred ---hcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCch---------hccHHHHHHHHHHhccCChhHH
Q 002996 111 ---INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF---------EITSHTLSKLLTALNECTEWGQ 178 (860)
Q Consensus 111 ---~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~---------~~~~~~~~~Ll~~l~~~~~w~q 178 (860)
.+|+.++. .+..|.+.+.|++++|..+|+.++..|+.+ |+..+ ..+...+..+-....+..+-.+
T Consensus 556 wl~~h~~~L~~--vl~~L~~~m~~~~~~vq~aA~~af~~i~~~-C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~ 632 (1073)
T 3gjx_A 556 FLRAHWKFLKT--VVNKLFEFMHETHDGVQDMACDTFIKIAQK-CRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQV 632 (1073)
T ss_dssp HHHHCHHHHHH--HHHHHHHHTTCCSTTHHHHHHHHHHHHHHH-TGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHH
T ss_pred HHHhCHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHH
Confidence 47776653 667777778899999999999999999876 32211 1222233333333334455555
Q ss_pred HHHHHHHHhcc
Q 002996 179 VFILDALSRYK 189 (860)
Q Consensus 179 ~~il~~L~~~~ 189 (860)
..+.+.++...
T Consensus 633 ~~lyeav~~vi 643 (1073)
T 3gjx_A 633 HTFYEAVGYMI 643 (1073)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 111
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=94.08 E-value=0.25 Score=46.12 Aligned_cols=85 Identities=8% Similarity=0.065 Sum_probs=56.2
Q ss_pred CCeEEEEEEEee-----CCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCC-CccCCCC------eeeEEEeee
Q 002996 643 QGLQIGAELTRQ-----DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGT------SGRTLLPMV 710 (860)
Q Consensus 643 ~gl~I~~~~~~~-----~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~-~~l~pg~------~~~~~v~i~ 710 (860)
+||+|.+.+.+. ++...+.+.++|++..++++|.+|.--+. +++.+-.++. ..|+|++ .++|.+.|.
T Consensus 35 n~l~I~f~~~~~~~p~~~~~~~i~~~~~N~s~~~is~f~fQaAVPK-~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v~ 113 (153)
T 1p4u_A 35 NGFRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQAAAPK-SMKVKLQPPSGTELSPFSPIQPPAAITQVMLLA 113 (153)
T ss_dssp TTEEEEEEEBSSCCTTCTTEEEEEEEEEECSSSCBEEEEEEEECBT-TSEEEECCCSCSCBCCCBTTBCCCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCCCCeEEEEEEEEeCCCCccccEEEEEEcCc-ccEEEeeCCCCCccCCCCcCCCCCCEEEEEEEe
Confidence 789999999984 23467899999999999999999987443 4444444332 3666644 367776664
Q ss_pred ecCCCCCCCCCcceEEEEecC
Q 002996 711 LFQNMSAGPPSSLLQVAVKNN 731 (860)
Q Consensus 711 ~~~~~~~~~~~~~l~~~~~~~ 731 (860)
-. ...+..+++++.|+-+
T Consensus 114 n~---~~~~l~LR~klsY~~~ 131 (153)
T 1p4u_A 114 NP---LKEKVRLRYKLTFALG 131 (153)
T ss_dssp CT---TCCCCCEEEEEEEEET
T ss_pred CC---CCCCEEEEEEEEEEEC
Confidence 32 1234445666666543
No 112
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.81 E-value=0.82 Score=46.85 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=36.7
Q ss_pred HHHHHHHhhccCCchHHHH----HHHHHHhhcccccCCHHHHH---HHHHhhCCCCcHHHHHHHHHHHHHHhhcCC
Q 002996 384 IIATLCESLDTLDEPEAKA----SMIWIIGEYAERIDNADELL---ESFLESFPEEPAQVQLQLLTATVKLFLKKP 452 (860)
Q Consensus 384 ~i~~L~~~l~~~~~~~~~~----~~~wilGEy~~~i~~~~~~l---~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p 452 (860)
+...+++.+.. +.+..+. .+..++.+||-. +...+ ..+...+.+.+..||-+.+++++-+|....
T Consensus 168 v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 168 MTPMLLDALKS-KNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 44445554433 2344433 233445555543 23345 666666777777778777777777776544
No 113
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.66 E-value=0.27 Score=49.64 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=79.7
Q ss_pred HHHHHHHhhcCCCCH--HHHhHHHHHhcCCCh--hh----hHH-HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc---
Q 002996 46 LAVNTFVKDSQDPNP--LIRALAVRTMGCIRV--DK----ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA--- 113 (860)
Q Consensus 46 L~in~l~kDl~~~n~--~ir~lALr~l~~i~~--~e----~~~-~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p--- 113 (860)
|.+..+.+-|.++++ .++..|..++.++.. ++ +++ -.++.+.++|.+.++.|++.|+-++..+-..++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 445677788888877 777777777766542 22 221 247889999999999999999999999976544
Q ss_pred cccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhc
Q 002996 114 ELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 114 ~~~~~~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~ 150 (860)
..+.+.+-++.|.++|. ..+..+.-+|..+|..+...
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 34445688999999997 47889999999999988654
No 114
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.19 E-value=21 Score=44.02 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=48.2
Q ss_pred HHHHHHhhhc-CCChHHHHHHHHHHHHHHhhcc-cccccccHHHHH-HHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 82 LCDPLQRCLK-DDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESL-KDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 82 l~~~v~~~l~-d~~~~VRk~A~~~l~kl~~~~p-~~~~~~~~~~~l-~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
+...+.+++. ..++-+.+.+..|+.++...-| +.+-+.++++.+ ..+|. ++.+..+|+-.|.+|...+.
T Consensus 207 Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~ 278 (1073)
T 3gjx_A 207 IFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSV 278 (1073)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccc
Confidence 3344444453 4678888888888888877643 444445788877 57774 56788899999999887643
No 115
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.66 E-value=28 Score=43.88 Aligned_cols=124 Identities=14% Similarity=0.029 Sum_probs=68.7
Q ss_pred CHHHHhHHHHHhcCCCh-hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc---ccHHHHHHHhhc-C--
Q 002996 59 NPLIRALAVRTMGCIRV-DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED---RGFLESLKDLIS-D-- 131 (860)
Q Consensus 59 n~~ir~lALr~l~~i~~-~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~---~~~~~~l~~lL~-D-- 131 (860)
++..|.-|-..|-.+.. ++-...+...+. -.+.+++||--|+..+-+..+.+=..+.+ ..+.+.+..++. .
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~ 103 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTL 103 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSC
T ss_pred ChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcc
Confidence 67789889888877653 233333332222 14678999999999998877542111211 123445555543 2
Q ss_pred ----CChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 002996 132 ----NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRY 188 (860)
Q Consensus 132 ----~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~ 188 (860)
..+.|...+..++..|...+....|. ..+..|++.+.. ++-.....+++|...
T Consensus 104 ~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp---~ll~~L~~~~~~-~~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 104 NILEEENHIKDALSRIVVEMIKREWPQHWP---DMLIELDTLSKQ-GETQTELVMFILLRL 160 (1204)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHHHHSTTTCT---THHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhCcccch---HHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 34666666666777887765434454 344555544433 443233344444433
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.33 E-value=0.26 Score=61.29 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=87.0
Q ss_pred CcchHHHHHHHHHHhcC--------CCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh---h
Q 002996 22 NLELKKLVYLYLINYAK--------SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC---L 90 (860)
Q Consensus 22 ~~~~Krl~Yl~l~~~~~--------~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~---l 90 (860)
+-.+++.++|++..+.+ ..+++.--+.+.+.+-+...++.-+-++|++|||++.++.++.+.+.+... -
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~ 487 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSL 487 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCC
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCccccc
Confidence 44567778887766543 134555566677777777778899999999999999998877654443221 1
Q ss_pred cCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc--CCChhHHHHHHHHHHHH
Q 002996 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS--DNNPMVVANAVAALAEI 147 (860)
Q Consensus 91 ~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~--D~d~~V~~~al~~l~~i 147 (860)
.+....||..|+.|+.++-...|+.+. +.+..++. +.++.|..+|+.+|.+-
T Consensus 488 ~~~~~rvr~aAi~ALr~~~~~~p~~v~-----~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 488 DEYSTRVQAEAIMALRNIAKRDPRKVQ-----EIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp CCSCHHHHHHHHHTTTTGGGTCHHHHH-----HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHhhhhchHHHH-----HHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 223567999999999998877776544 66777774 46789999998888764
No 117
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=91.08 E-value=2.3 Score=42.66 Aligned_cols=74 Identities=18% Similarity=0.076 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCCCh--hHHHHHHHHHHHHhhcCCCCchhc-cHHHHHHHHHHhccCChhHHHHHHHHHHhccccCHH
Q 002996 121 FLESLKDLISDNNP--MVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR 194 (860)
Q Consensus 121 ~~~~l~~lL~D~d~--~V~~~al~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~ 194 (860)
-++.+.++|...|+ .+...|...+..++..++.....+ ....++.|+..|...++-.|......|..+...+++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 35777888877776 777777777777765543221111 124577888888877888888888888777654443
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.72 E-value=3.5 Score=44.47 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred HHHHHHH-HHH-hcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhcCCChHHHHHH
Q 002996 26 KKLVYLY-LIN-YAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTA 101 (860)
Q Consensus 26 Krl~Yl~-l~~-~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~v~~~l~d~~~~VRk~A 101 (860)
.|+-+|. +.. +.+.+|+++--....+..=-.+++..+|-....++.... ..+++..+++.+..++.|.++.|-|+|
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~ 120 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKA 120 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3554443 333 355677644333344444445778889988888887654 577889999999999999999999999
Q ss_pred HHHHHHHHhh-------cccc---ccc-----ccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 102 AICVAKLYDI-------NAEL---VED-----RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 102 ~~~l~kl~~~-------~p~~---~~~-----~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
+.|...+|+. +|.. .+. ..+.+.+..+++..|.+|..+|+..+..+.
T Consensus 121 I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 121 ILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 9999999964 3321 111 123455566777889999999999888754
No 119
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.71 E-value=0.72 Score=46.00 Aligned_cols=140 Identities=13% Similarity=0.089 Sum_probs=87.1
Q ss_pred CcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHh-hcCCCCHHHHhHHHHHhcCCC---hhhhHHH
Q 002996 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIR---VDKITEY 81 (860)
Q Consensus 6 d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~k-Dl~~~n~~ir~lALr~l~~i~---~~e~~~~ 81 (860)
|....+.-+-.+.+++.++.|-++--.+... ...++ +...++. =-.|++=-||=.+-.+++.+. .++ .
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~ 139 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---K 139 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---T
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---H
Confidence 3344445555677777777776544444434 32222 2344444 234666666644444444433 233 2
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc-ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 82 l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~-~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
+.+.+.+-+.|.++.|||.|+.++.. +..-|....+ ...++.|..+..|++--|.-+.-..|.++.+.+|.-
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRI-WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCS-GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHH-HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 44567888999999999999999743 1111222211 236788899999999999999889999999988763
No 120
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.08 E-value=2.4 Score=51.59 Aligned_cols=142 Identities=12% Similarity=0.112 Sum_probs=99.7
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh--hHH-HH---HHHHHHHHHhhhhhhHHHHHHHHHHHHHh-CcccH
Q 002996 309 QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER--AAE-RC---ISVLLELIKIKVNYVVQEAIIVIKDIFRR-YPNTY 381 (860)
Q Consensus 309 ~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~--~~~-~~---v~~ll~ll~~~~~~v~~e~i~~l~~i~~~-~p~~~ 381 (860)
.++..|.+.+.+.... +.+..+|+.+|.+++. ..+ +. +..+++.+.+++..|.+.+-..+..++.. +|+..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 4666777776654333 7777888888876632 223 33 35555555555566666555567777765 56667
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHhhcccccCC-----HHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCC
Q 002996 382 ESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 452 (860)
Q Consensus 382 ~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~~-----~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p 452 (860)
..++..|+++++.-...+.+.+++.+++...+..+. -++++-.+.+...+..++|+.+...++.|++....
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence 778889999887666788999999999998875432 35777777888888899999999999888887543
No 121
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=87.22 E-value=1.8 Score=51.09 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=82.8
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCCh-hhhH-----HHHHH-HHHhhhcCCChHHHHHHHHHHHHHHhh-cccccc---cc
Q 002996 51 FVKDSQDPNPLIRALAVRTMGCIRV-DKIT-----EYLCD-PLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVE---DR 119 (860)
Q Consensus 51 l~kDl~~~n~~ir~lALr~l~~i~~-~e~~-----~~l~~-~v~~~l~d~~~~VRk~A~~~l~kl~~~-~p~~~~---~~ 119 (860)
+.+.|+|+++..|..|+.+|++|.. +++. +.++. -|.++|.|++.-||..|+-++..|... .++... +.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 4456999999999999999999873 3332 23343 457789999999999999988777543 233322 12
Q ss_pred cHHHHHHHhhcCCC---------------------hhHHHHHHHHHHHHhhcCCCCchhc-cHHHHHHHHHHhcc---CC
Q 002996 120 GFLESLKDLISDNN---------------------PMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE---CT 174 (860)
Q Consensus 120 ~~~~~l~~lL~D~d---------------------~~V~~~al~~l~~i~~~~~~~~~~~-~~~~~~~Ll~~l~~---~~ 174 (860)
+.++.|..+|.... +.+.-+++.+|..++.......-.+ ....+..|+..|.. ..
T Consensus 119 ~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~ 198 (684)
T 4gmo_A 119 DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAP 198 (684)
T ss_dssp THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSC
T ss_pred ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCc
Confidence 34444544442100 1233456666666665432111000 11334455555432 22
Q ss_pred hhHHHHHHHHHHhccccCHH
Q 002996 175 EWGQVFILDALSRYKAADAR 194 (860)
Q Consensus 175 ~w~q~~il~~L~~~~~~~~~ 194 (860)
.=.+..++++|..+...+++
T Consensus 199 ~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 199 QDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCHH
Confidence 33566778888777665544
No 122
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=86.78 E-value=3.2 Score=48.95 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=51.9
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHHhhccccc---ccccHH-HHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFL-ESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 85 ~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~---~~~~~~-~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
++.+.|.++++-+|..|+.|+..+.. +|+.. ...+.+ ..+..+|.|.+..|+.+|..+|..++...+
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 34456899999999999999999986 55431 122344 557889999999999999999988876643
No 123
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=83.69 E-value=5.7 Score=40.39 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=88.0
Q ss_pred HHHHHHH-HHH-hcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhcCCChHHHHHH
Q 002996 26 KKLVYLY-LIN-YAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTA 101 (860)
Q Consensus 26 Krl~Yl~-l~~-~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~v~~~l~d~~~~VRk~A 101 (860)
.|+-+|. +.. ..+.+|++.--+...+..=-.+++..+|-.-..++.... .++++..+++.+..++.|.++.|-|+|
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 5555554 233 455677765555555555345678888888888886554 578899999999999999999999999
Q ss_pred HHHHHHHHhh-------cccc---ccc-----ccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 102 AICVAKLYDI-------NAEL---VED-----RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 102 ~~~l~kl~~~-------~p~~---~~~-----~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
+.|...+|+. +|+. .+. ..+...+..+++..|.+|..+|+..+..+.
T Consensus 111 I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 111 IQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 9999999975 3321 111 123445566777789999999998887754
No 124
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.08 E-value=7.3 Score=43.71 Aligned_cols=227 Identities=13% Similarity=0.130 Sum_probs=126.8
Q ss_pred hccCCCcchHHHHHHHHHHhcCCC-----------CcHHHHHHHHHHh----hcCCCC--HHHHhHHHHHhcCCC--hhh
Q 002996 17 CMQTENLELKKLVYLYLINYAKSQ-----------PDLAILAVNTFVK----DSQDPN--PLIRALAVRTMGCIR--VDK 77 (860)
Q Consensus 17 l~~s~~~~~Krl~Yl~l~~~~~~~-----------~el~~L~in~l~k----Dl~~~n--~~ir~lALr~l~~i~--~~e 77 (860)
-+-+++-+.|.=+-+++..+.+.+ .|+++-.+=.|.- |.-+.. --||--|-.+||.+. .++
T Consensus 182 DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~e 261 (800)
T 3oc3_A 182 NLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGP 261 (800)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSCS
T ss_pred HhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCChh
Confidence 455677777777788887766443 2444433333322 222221 134433333333331 112
Q ss_pred hHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchh
Q 002996 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (860)
Q Consensus 78 ~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~ 157 (860)
.+.+ ..+.+.+....+-||--+.+++--+...-.+ + .+.++.+...|.|.|--|.+.|..+|..+. .+. .+
T Consensus 262 -~~IL-~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-L--d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~-~l- 332 (800)
T 3oc3_A 262 -NDII-EQLVGFLDSGDWQVQFSGLIALGYLKEFVED-K--DGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITD-SL- 332 (800)
T ss_dssp -CCHH-HHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-H--HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSS-TH-
T ss_pred -HHHH-HHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-H--HHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chh-hH-
Confidence 2222 2222455778899999999988766222222 2 246778888899999999999999998887 222 12
Q ss_pred ccHHHHHHHHHHhccCCh--hHHHHHHHHHHhccccCH--HHHHHHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHH
Q 002996 158 ITSHTLSKLLTALNECTE--WGQVFILDALSRYKAADA--REAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVV 233 (860)
Q Consensus 158 ~~~~~~~~Ll~~l~~~~~--w~q~~il~~L~~~~~~~~--~~~~~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~ 233 (860)
...+..+-.+|.+.++ -..-.+|++|+.++.... .....++.++.|+++|.-++|..++ +.++.........
T Consensus 333 --~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AV--L~TL~tfL~~~~L 408 (800)
T 3oc3_A 333 --DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSI--LNMVKNLSEESID 408 (800)
T ss_dssp --HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHH--HHHTTTCCCHHHH
T ss_pred --HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHH--HHHHHHHHhhhHH
Confidence 2334444444433322 134556777776542211 0001567788899999999998876 3344333333333
Q ss_pred HHHHHHhhhHHHhh-cCCChhHHHHHHHHHH
Q 002996 234 RNLCKKMAPPLVTL-LSAEPEIQYVALRNIN 263 (860)
Q Consensus 234 ~~~~~~~~~~L~~l-ls~~~niry~aL~~l~ 263 (860)
+-+ +..+ +..+.+++-.+++.-.
T Consensus 409 RLI-------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 409 FLV-------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHH-------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHH-------HHHHHhCCcHHHHHHHHHHHH
Confidence 322 2333 4778888888777663
No 125
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=82.67 E-value=46 Score=34.90 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=63.8
Q ss_pred hhhcCCChHHHHHHHHHHHHHHhhccccccc---ccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCC-CchhccHHHH
Q 002996 88 RCLKDDDPYVRKTAAICVAKLYDINAELVED---RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSHTL 163 (860)
Q Consensus 88 ~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~---~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~-~~~~~~~~~~ 163 (860)
+.|.+++.-.+|.|+..+.+++..+++.+.+ .+=+..|.+...+.+.....-++.+|.++..+..+ ..+--....+
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI 204 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTI 204 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHH
Confidence 4444677888999999999999988887764 11135666777788889999999999998654111 0111134556
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhc
Q 002996 164 SKLLTALNECTEWGQVFILDALSRY 188 (860)
Q Consensus 164 ~~Ll~~l~~~~~w~q~~il~~L~~~ 188 (860)
.+++..+.....-..-..|.+|..+
T Consensus 205 ~~lyslv~s~~~~V~k~AL~LL~v~ 229 (339)
T 3dad_A 205 QWLYTLCASLSRLVVKTALKLLLVF 229 (339)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHH
Confidence 7777666643332322334444433
No 126
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=80.24 E-value=9.5 Score=42.82 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=80.2
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcC-C
Q 002996 15 VNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-D 93 (860)
Q Consensus 15 i~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d-~ 93 (860)
++....+.-+.+.=|-|.+.-+.+.=.+ .--+++.+.+-|.|+++.||+.|-.+|.-+..++-+..+..-+=.+|.+ .
T Consensus 269 V~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LD 347 (800)
T 3oc3_A 269 VGFLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEE 347 (800)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCC
T ss_pred HhhcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhc
Confidence 3344566677777777776644111112 4556777778888888888888888888776655555555555555543 1
Q ss_pred ChHHHHHHHHH-HHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002996 94 DPYVRKTAAIC-VAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (860)
Q Consensus 94 ~~~VRk~A~~~-l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~ 148 (860)
+--.-..++|- +.+++...++...++..+++|...|...-++|..+++.++..+.
T Consensus 348 DLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 348 LISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp SCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred ccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 11122333333 34555554444444467777777777777788777777765543
No 127
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=75.64 E-value=3 Score=42.14 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=31.1
Q ss_pred hhc-CCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHH
Q 002996 246 TLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVD 324 (860)
Q Consensus 246 ~ll-s~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~ 324 (860)
.++ ..++++|..+...+ -+..+. ..+.+++..||..+.+-+- . .++..+.+.+..
T Consensus 177 ~ll~D~d~~VR~aaa~~l------~~~~L~------~Ll~D~d~~VR~~aa~~l~-----------~-~~L~~L~D~~~~ 232 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASRL------RGDDLL------ELLHDPDWTVRLAAVEHAS-----------L-EALRELDEPDPE 232 (244)
T ss_dssp GSTTCSSHHHHHHHHHHC------CGGGGG------GGGGCSSHHHHHHHHHHSC-----------H-HHHHHCCCCCHH
T ss_pred HHHcCCCHHHHHHHHHhC------CHHHHH------HHHcCCCHHHHHHHHHcCC-----------H-HHHHHccCCCHH
Confidence 444 35667777766553 111111 1134555667776666532 1 222333555666
Q ss_pred HHHHHHHHH
Q 002996 325 FVRKAVRAI 333 (860)
Q Consensus 325 ~~~~~i~~I 333 (860)
++..+...+
T Consensus 233 VR~aa~~~L 241 (244)
T 1lrv_A 233 VRLAIAGRL 241 (244)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHHHh
Confidence 655555443
No 128
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=75.11 E-value=11 Score=37.17 Aligned_cols=150 Identities=9% Similarity=-0.012 Sum_probs=85.6
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC-HHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhc
Q 002996 15 VNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPN-PLIRALAVRTMGCIR--VDKITEYLCDPLQRCLK 91 (860)
Q Consensus 15 i~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n-~~ir~lALr~l~~i~--~~e~~~~l~~~v~~~l~ 91 (860)
-.|.++.-++.+-++-+++....+.-.+-.+-.+..+... -.| ..+=++| ++++.+- .++ .+.+.+.+-+.
T Consensus 61 ~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~~ 134 (220)
T 2b6c_A 61 EAYYQKTEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFYG 134 (220)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHTT
T ss_pred HHHHcCchhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHHc
Confidence 3466777777777776666655433122122223333322 122 2333344 3333321 121 23455788899
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHHHHHHHHhc
Q 002996 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN 171 (860)
Q Consensus 92 d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~~~Ll~~l~ 171 (860)
|.+.++||.|+.+.+...+ ..+ .. ...+.+..++.|++.-|.-+.--+|.++...++. .+...+ .-.
T Consensus 135 s~~~w~rR~ai~~~l~~~~-~~~-~~--~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~--------~v~~fl-~~~ 201 (220)
T 2b6c_A 135 AENFWNRRVALNLQLMLKE-KTN-QD--LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ--------WVEELM-KEL 201 (220)
T ss_dssp CSSHHHHHHHHHTTTTCGG-GCC-HH--HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH--------HHHHHH-HHS
T ss_pred CCCHHHHHHHHHHHHHHHH-CCC-HH--HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH--------HHHHHH-hhc
Confidence 9999999999998864322 111 11 2456666788899999988888889999877653 233333 223
Q ss_pred cCChhHHHHHHH
Q 002996 172 ECTEWGQVFILD 183 (860)
Q Consensus 172 ~~~~w~q~~il~ 183 (860)
..++|..-+.++
T Consensus 202 ~l~~~~~r~Aik 213 (220)
T 2b6c_A 202 VLSPLAQREGSK 213 (220)
T ss_dssp CCCHHHHHHHTT
T ss_pred cCCHHHHHHHHH
Confidence 456776655543
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=73.92 E-value=68 Score=39.64 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhhhh----ccHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002996 307 IDQVLLEFKEYATE----VDVDFVRKAVRAIGRCAIKLERA--------AERCISVLLELIKIKVNYVVQEAIIVIKDIF 374 (860)
Q Consensus 307 v~~Iv~eL~~y~~~----~d~~~~~~~i~~I~~la~k~~~~--------~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~ 374 (860)
-.++++++.+.+.. .+..++..++.++|.++.++... ..++.+.+.+.+..+. .++.+..|+-|-
T Consensus 389 t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~---~~~~~~~LkaLG 465 (1056)
T 1lsh_A 389 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAK---EEEIVLALKALG 465 (1056)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHhh
Confidence 35677777666643 35678888999999999987432 3556666655555432 233333333332
Q ss_pred H-hCcccHHHHHHHHHHhhccC-----C-chHHHHHHHHHHhhcccccCCHHHHHHHHHhhC--CCCcHHHHHHHHHHHH
Q 002996 375 R-RYPNTYESIIATLCESLDTL-----D-EPEAKASMIWIIGEYAERIDNADELLESFLESF--PEEPAQVQLQLLTATV 445 (860)
Q Consensus 375 ~-~~p~~~~~~i~~L~~~l~~~-----~-~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~--~~e~~~v~~~iLta~~ 445 (860)
. ..|+ ++..|.+++... . ....+.+++|-+..+... .+..+-+.++.-| ..+++++|.+.+..++
T Consensus 466 N~g~p~----~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~--~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 466 NAGQPN----SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR--DPRKVQEIVLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp HHTCGG----GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT--CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred ccCChh----HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh--chHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Confidence 1 2453 455566666432 2 234667889999988753 3555666677777 6789999987776665
Q ss_pred HHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 002996 446 KLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 487 (860)
Q Consensus 446 Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll 487 (860)
+ .+|+ ..+++.+.... ....|.+| +++.|..|-
T Consensus 540 ~---t~P~---~~~l~~ia~~l-~~E~~~QV--~sfv~S~l~ 572 (1056)
T 1lsh_A 540 E---SKPS---VALVSMVAVRL-RREPNLQV--ASFVYSQMR 572 (1056)
T ss_dssp H---TCCC---HHHHHHHHHHH-TTCSCHHH--HHHHHHHHH
T ss_pred H---HCcC---HHHHHHHHHHH-hhCchHHH--HHHHHHHHH
Confidence 4 3575 56777777653 33345555 455555444
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.86 E-value=27 Score=31.65 Aligned_cols=92 Identities=9% Similarity=0.084 Sum_probs=62.1
Q ss_pred hccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----Ch---hhhH-HHHHHHHHh
Q 002996 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKIT-EYLCDPLQR 88 (860)
Q Consensus 17 l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i----~~---~e~~-~~l~~~v~~ 88 (860)
+.....-+.-.-+.+-++-....+++-..-++-.|+|=|+++||.+.-+||..|-.+ +. .+++ +.+...+.+
T Consensus 13 AT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 13 ATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp HTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHH
T ss_pred HcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 333334445555667777778888888889999999999999999988888766533 11 1121 344555566
Q ss_pred hhcCCChHHHHHHHHHHHHH
Q 002996 89 CLKDDDPYVRKTAAICVAKL 108 (860)
Q Consensus 89 ~l~d~~~~VRk~A~~~l~kl 108 (860)
++...++-||++....+..-
T Consensus 93 l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 93 VLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHH
Confidence 66567888888877766544
No 131
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=72.81 E-value=22 Score=33.23 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=64.8
Q ss_pred hHHHh-HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HH
Q 002996 11 FTDVV-NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EY 81 (860)
Q Consensus 11 f~~vi-~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~----~e~~-~~ 81 (860)
|-..| ++......+.-.-..+-++-+.+.+++-..-++-.|+|=|+++||.++-+||..|-.+. . .+++ ..
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 33444 34444444555555667777777777888889999999999999999988888774321 1 1222 44
Q ss_pred HHHHHHhhhcC-CChHHHHHHHHHHHHH
Q 002996 82 LCDPLQRCLKD-DDPYVRKTAAICVAKL 108 (860)
Q Consensus 82 l~~~v~~~l~d-~~~~VRk~A~~~l~kl 108 (860)
+...+.+++.. .++-||+++...+..-
T Consensus 96 Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 96 FATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 45555566654 6788988887755443
No 132
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=72.21 E-value=65 Score=33.76 Aligned_cols=140 Identities=10% Similarity=0.062 Sum_probs=91.5
Q ss_pred HHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHH-----HHHhhcCCCCHHHHhHHHHHhcCCChh-----hhH--H
Q 002996 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVN-----TFVKDSQDPNPLIRALAVRTMGCIRVD-----KIT--E 80 (860)
Q Consensus 13 ~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in-----~l~kDl~~~n~~ir~lALr~l~~i~~~-----e~~--~ 80 (860)
++++-+.+.+-..+|-.-.-+..++..+.+++--.|+ .|.+=..+....+.+-|||++..+..- .++ +
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 4555555666666776666777755566665444433 345555666888999999999988654 444 5
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc---c-c---------cHHHHHHHhhc---CCChhHHHHHHHHH
Q 002996 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---D-R---------GFLESLKDLIS---DNNPMVVANAVAAL 144 (860)
Q Consensus 81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~---~-~---------~~~~~l~~lL~---D~d~~V~~~al~~l 144 (860)
.++.-|...+.+..+.|-|.|.--+..+...++.... . - ...+.|..+|. ..|..+..+|++++
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 6777788888888888988887766666655542221 0 0 01245556775 46788888888888
Q ss_pred HHHhhcCC
Q 002996 145 AEIEENSS 152 (860)
Q Consensus 145 ~~i~~~~~ 152 (860)
+.+...-+
T Consensus 282 N~lL~~ap 289 (339)
T 3dad_A 282 NKTLAALP 289 (339)
T ss_dssp HHHHHHCS
T ss_pred HHHHhcCC
Confidence 87765543
No 133
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=71.88 E-value=5.3 Score=40.32 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=59.6
Q ss_pred hHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCC
Q 002996 15 VNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDD 94 (860)
Q Consensus 15 i~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~ 94 (860)
..++..++..+++.+-- .+ ....+..=++|+++.||..|.+.++ + +.+..++.|++
T Consensus 128 ~~L~~D~d~~VR~~aA~---~l----------~~~~l~~l~~D~d~~VR~~aa~~l~----~-------~ll~~ll~D~d 183 (244)
T 1lrv_A 128 EQMAADRDYLVRAYVVQ---RI----------PPGRLFRFMRDEDRQVRKLVAKRLP----E-------ESLGLMTQDPE 183 (244)
T ss_dssp GGGTTCSSHHHHHHHHH---HS----------CGGGGGGTTTCSCHHHHHHHHHHSC----G-------GGGGGSTTCSS
T ss_pred HHHHcCCCHHHHHHHHH---hc----------CHHHHHHHHcCCCHHHHHHHHHcCC----H-------HHHHHHHcCCC
Confidence 34566777777776532 21 1234556678899999999988743 1 23457788999
Q ss_pred hHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHH
Q 002996 95 PYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (860)
Q Consensus 95 ~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l 144 (860)
+.||+.|+..+ .+ +.|..++.|.++.|..++...+
T Consensus 184 ~~VR~aaa~~l------~~---------~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 184 PEVRRIVASRL------RG---------DDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp HHHHHHHHHHC------CG---------GGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHHHHHHHhC------CH---------HHHHHHHcCCCHHHHHHHHHcC
Confidence 99999888652 12 2355677888888877665443
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=70.63 E-value=26 Score=34.73 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=62.7
Q ss_pred HhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhH-HHHHHH
Q 002996 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKIT-EYLCDP 85 (860)
Q Consensus 14 vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~-------~~e~~-~~l~~~ 85 (860)
|-++......+.-.-..+.+.-....+++-+.-++-.|+|=|+++||.++-+||..|-.+. -.+++ +.++..
T Consensus 13 i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~ 92 (226)
T 3zyq_A 13 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEE 92 (226)
T ss_dssp HHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHH
Confidence 3345554445555556677777777777878899999999999999999999998776431 01111 233333
Q ss_pred HHhhhc-CCChHHHHHHHHHHHHH
Q 002996 86 LQRCLK-DDDPYVRKTAAICVAKL 108 (860)
Q Consensus 86 v~~~l~-d~~~~VRk~A~~~l~kl 108 (860)
+.+++. ..++-||++++..+...
T Consensus 93 l~~l~~~~~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 93 LKDLLKRQVEVNVRNKILYLIQAW 116 (226)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHH
Confidence 444443 36778888877655543
No 135
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=68.04 E-value=2.5e+02 Score=35.22 Aligned_cols=125 Identities=12% Similarity=0.142 Sum_probs=75.2
Q ss_pred HHHHHHhhhhcCCChHHH-HHHHHHHHhhhccChHHHHHHHHHhhhHHHhhc-C-CChhHHHHHHHHHHHHHhhChhhhh
Q 002996 198 NIVERVTPRLQHANCAVV-LSAMILQQMELITSTDVVRNLCKKMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRPTILA 274 (860)
Q Consensus 198 ~ll~~v~~~l~~~n~aVv-~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~ll-s-~~~niry~aL~~l~~l~~~~p~~~~ 274 (860)
.++.....++++.++.|. +++.+|..+-...+....+ .++..|+... + ...++.- ||+.|..++..+|..+.
T Consensus 400 siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qq----eVl~~Lv~hi~sg~~~eVd~-ALdvL~~L~~~~~~~l~ 474 (1323)
T 3s4w_B 400 SILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQ----EVVGALVTHVCSGTEAEVDT-ALDVLLELIVLNASAMR 474 (1323)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHH----HHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHH----HHHHHHHhhhcCCCcHHHHH-HHHHHHHHHhcCHHHHh
Confidence 455666677888888765 4444444432222222222 3455666654 3 4556654 99999999999998766
Q ss_pred cc---ce-EEEeccCCc-HHHHHHHHHHHHHhcCcc--c-HHHHHHHH----HHhhhhccHHHHHH
Q 002996 275 HE---IK-VFFCKYNDP-IYVKMEKLEIMIKLASDR--N-IDQVLLEF----KEYATEVDVDFVRK 328 (860)
Q Consensus 275 ~~---~~-~~~~l~~d~-~~Ik~~~L~lL~~l~~~~--N-v~~Iv~eL----~~y~~~~d~~~~~~ 328 (860)
++ ++ ++.++.+=. ..||+. .++|..++-.. + ...|-+|+ .+++...+..+++.
T Consensus 475 ~~a~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~Kri 539 (1323)
T 3s4w_B 475 LNAAFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLI 539 (1323)
T ss_dssp HTHHHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhh
Confidence 53 33 565654444 566655 88888876422 1 22455554 36677777777764
No 136
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=67.78 E-value=11 Score=37.59 Aligned_cols=75 Identities=9% Similarity=0.024 Sum_probs=57.2
Q ss_pred hhcCCCCHHHHhHHHH----HhcCCC----hhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHH
Q 002996 53 KDSQDPNPLIRALAVR----TMGCIR----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (860)
Q Consensus 53 kDl~~~n~~ir~lALr----~l~~i~----~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~ 124 (860)
+=+.|+|+..|-.|+- .|+... ...-.+.+...+...+.|.+.||||...-++..+.+.+|+.+.. ++..
T Consensus 115 ~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~--al~~ 192 (235)
T 1t06_A 115 KWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEK--AVEI 192 (235)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHH--HHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHH--HHHH
Confidence 3346789999988888 555544 23455777788888999999999999999999999999998764 6665
Q ss_pred HHHhh
Q 002996 125 LKDLI 129 (860)
Q Consensus 125 l~~lL 129 (860)
..++-
T Consensus 193 ~~~l~ 197 (235)
T 1t06_A 193 AKEVG 197 (235)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 55553
No 137
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=67.43 E-value=7 Score=47.90 Aligned_cols=101 Identities=9% Similarity=0.058 Sum_probs=72.6
Q ss_pred chHHHhHhccCCCc-chHHH-HHHHHHHhcCC--CCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhc--------CCChh
Q 002996 10 LFTDVVNCMQTENL-ELKKL-VYLYLINYAKS--QPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMG--------CIRVD 76 (860)
Q Consensus 10 ~f~~vi~l~~s~~~-~~Krl-~Yl~l~~~~~~--~~el~~L~in~l~kDl~-~~n~~ir~lALr~l~--------~i~~~ 76 (860)
++|.+..+...+|- ++.++ ++..+..++.. .++.+-.+++.+..-.+ +++- .|..+|.++- -+...
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 44445555555665 67787 66666666543 45566778888877776 5676 8888888843 33333
Q ss_pred hhHHHHHHHHHhhhcCCC-hHHHHHHHHHHHHHHhhc
Q 002996 77 KITEYLCDPLQRCLKDDD-PYVRKTAAICVAKLYDIN 112 (860)
Q Consensus 77 e~~~~l~~~v~~~l~d~~-~~VRk~A~~~l~kl~~~~ 112 (860)
-.+.+...|.++|.|+. .-||..|+.++.-+.+-.
T Consensus 840 -~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 840 -EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp -HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred -HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 33677888999999999 999999999998887765
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.35 E-value=28 Score=32.47 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=45.4
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 85 ~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
.|.++-.....-.--...+-+.-+.+..++... +.+..|.+-|..+|+.|+..|+.+|..+.++ |+.
T Consensus 19 ~IekATs~~~~~~Dw~~~leicD~I~~~~~~~k--eA~ral~krl~~~n~~vql~AL~LLd~~vkN-cG~ 85 (163)
T 1x5b_A 19 DVEKATNEYNTTEDWSLIMDICDKVGSTPNGAK--DCLKAIMKRVNHKVPHVALQALTLLGACVAN-CGK 85 (163)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-TCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hhH
Confidence 344444443333334556667777777765544 3677888888999999999999999777766 443
No 139
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=64.21 E-value=25 Score=34.95 Aligned_cols=89 Identities=10% Similarity=0.107 Sum_probs=60.7
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHH
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTL 163 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~ 163 (860)
+.+.+-+.|.++++||.|+.+++..+. ..+. . .+...+..++.|++.-|.-+.--+|.++...++. .+
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~-~~d~-~--~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~--------~v 201 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQ-KMDE-E--LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD--------VV 201 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGG-GCCH-H--HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH--------HH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHh-CCCH-H--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH--------HH
Confidence 446778889999999999998765432 1111 1 2556777888999999988888889999877653 34
Q ss_pred HHHHHHhccCChhHHHHHHHHH
Q 002996 164 SKLLTALNECTEWGQVFILDAL 185 (860)
Q Consensus 164 ~~Ll~~l~~~~~w~q~~il~~L 185 (860)
...+..- ..++|..-+.++-|
T Consensus 202 ~~fl~~~-~l~~~~~r~A~k~l 222 (232)
T 3jxy_A 202 WEYVQNN-ELAPLSKREAIKHI 222 (232)
T ss_dssp HHHHHHS-CCCHHHHHHHTTTT
T ss_pred HHHHHHC-CCCHHHHHHHHHhc
Confidence 4444332 55677766655544
No 140
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=62.29 E-value=1.7e+02 Score=36.68 Aligned_cols=112 Identities=7% Similarity=0.085 Sum_probs=57.8
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccHHHH
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTL 163 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~~~~ 163 (860)
..|.+.+.-....+++-.+-++..+..-+ +.+.....|.++|.+ |+......+-+|..+.-. -+...+..
T Consensus 160 ~ki~~vl~vap~~lQ~diI~sLPeIl~ds----~H~~v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls-----~~~l~~vr 229 (1323)
T 3s4w_B 160 AQMMQLISVAPVNLQHDFITSLPEILGDS----QHANVGKELGELLVQ-NTSLTVPILDVFSSLRLD-----PNFLSKIR 229 (1323)
T ss_dssp HHHHHHHHHSCTTTHHHHHHTHHHHSCGG----GHHHHHHHHHHHHHH-CSTTHHHHHHHHHHSCCC-----HHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHhcch----hhHHHHHHHHHHHhc-CcchHHHHHHHHHcCCCC-----HHHHHHHH
Confidence 33344443333455555555555444221 011244555555543 444455555555544211 12223445
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhh
Q 002996 164 SKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (860)
Q Consensus 164 ~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l 207 (860)
.+.+..|..++.+.--.++++|-..... +++.+++..+...|
T Consensus 230 ~~vl~~L~s~~~e~LP~lIkFLL~s~t~--~~~~evI~~LR~~L 271 (1323)
T 3s4w_B 230 QLVMGKLSSVRLEDFPVIVKFLLHSVTD--TTSLEVIAELRENL 271 (1323)
T ss_dssp HHHHHSTTSSCTTHHHHHHHHHHHSCSS--TTHHHHHHHHHHHH
T ss_pred HHHHHHhccCChhhhHHHHHHHHHhCCH--hhHHHHHHHHHHHc
Confidence 5666777778888888888888776643 24455555555444
No 141
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.15 E-value=63 Score=29.59 Aligned_cols=103 Identities=11% Similarity=-0.008 Sum_probs=72.0
Q ss_pred hHHHh-HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC---Ch----hhhH-HH
Q 002996 11 FTDVV-NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RV----DKIT-EY 81 (860)
Q Consensus 11 f~~vi-~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i---~~----~e~~-~~ 81 (860)
|-..| ++......+.-.-+.+-++-....+++-..-++-.|+|=++++||.+.-+||..|-.+ +. .+++ +.
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 44444 3444455555666777788888888888999999999999999999999999877543 11 2222 45
Q ss_pred HHHHHHhhhcC------CChHHHHHHHHHHHHHHhhcc
Q 002996 82 LCDPLQRCLKD------DDPYVRKTAAICVAKLYDINA 113 (860)
Q Consensus 82 l~~~v~~~l~d------~~~~VRk~A~~~l~kl~~~~p 113 (860)
+...+.+++.+ .++-||++....+..-....+
T Consensus 92 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 92 FLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 55666777753 578899998777665544433
No 142
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=61.78 E-value=10 Score=37.41 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=52.6
Q ss_pred HHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhccccccc
Q 002996 50 TFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED 118 (860)
Q Consensus 50 ~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~ 118 (860)
.+.+=+.|+|+.+|=.|+-.+-.-....-.+.+.+-+..++.|++-||||..+-++--+++.+|+.+..
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 355667889999888887755333333334556666777999999999999999999999999997763
No 143
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=61.33 E-value=8.8 Score=38.32 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=48.9
Q ss_pred cCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccc
Q 002996 55 SQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (860)
Q Consensus 55 l~~~n~~ir~lALr~l~~i~~~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~ 117 (860)
+.|+|+.+|=.|+-.+-.-....-.+.+...+..++.|.+.||||..+-++--+++.+|+.+.
T Consensus 140 ~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 140 IASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp HHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 357899888888766543333333456666778889999999999999999999999998775
No 144
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=57.40 E-value=44 Score=30.59 Aligned_cols=53 Identities=9% Similarity=-0.086 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 99 k~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
-.+.+-+.-+.+..|+.-. +.+..|.+-|..+||.|+..|+.+|..+.++ |+.
T Consensus 19 w~~~leicD~I~~~~~~~k--~a~rai~krl~~~n~~vql~AL~LLe~~vkN-CG~ 71 (148)
T 1mhq_A 19 WSAIQNFCEQVNTDPNGPT--HAPWLLAHKIQSPQEKEALYALTVLEMCMNH-CGE 71 (148)
T ss_dssp HHHHHHHHHHHHHSSHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCH
T ss_pred HHHHHHHHHHHHcCCccHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-cCH
Confidence 4556677777776665444 3667788888899999999999999777766 443
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=55.34 E-value=65 Score=29.48 Aligned_cols=66 Identities=9% Similarity=-0.035 Sum_probs=45.5
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 86 v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
|.++-....+----.+.+-+.-+.+..|+.-. +.+..|.+-|..+||.|+..|+.+|..+.++ |+.
T Consensus 16 IekATs~~l~~~dw~~ileicD~I~~~~~~pk--~a~ral~krl~~~n~~v~l~AL~LLe~cvkN-CG~ 81 (149)
T 3g2s_A 16 INRATNPLNKELDWASINGFCEQLNEDFEGPP--LATRLLAHKIQSPQEWEAIQALTVLETCMKS-CGK 81 (149)
T ss_dssp HHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-CCH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-cCH
Confidence 44444443333335677777777777775444 3677888888899999999999988776665 554
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.24 E-value=64 Score=31.63 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh----hhH-HHHHHHHHhhhc-CCC
Q 002996 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EYLCDPLQRCLK-DDD 94 (860)
Q Consensus 24 ~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~~----e~~-~~l~~~v~~~l~-d~~ 94 (860)
+.---..+.+.-....+++-..-++-.|+|=|+++||.++-+||..|-.+. .+ +++ +.+...+.+++. ..+
T Consensus 20 ~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~ 99 (220)
T 1dvp_A 20 EPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPH 99 (220)
T ss_dssp SCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSC
T ss_pred CcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCc
Confidence 333444566777777777788899999999999999999999998776431 11 111 223344444443 356
Q ss_pred hHHHHHHHHHHH
Q 002996 95 PYVRKTAAICVA 106 (860)
Q Consensus 95 ~~VRk~A~~~l~ 106 (860)
+-||++++.-+.
T Consensus 100 ~~Vk~kil~li~ 111 (220)
T 1dvp_A 100 ENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788887765443
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=54.70 E-value=50 Score=31.07 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=46.5
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhc
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~ 150 (860)
..|.++-.....-.--...+-+.-+.+..++... +.+..|.+.|..+|+.|+..|+.+|..+.++
T Consensus 16 ~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k--~A~ral~krl~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQ--IAVRLLAHKIQSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3455555543333344667778888887776544 3677888889999999999999999777666
No 148
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=53.85 E-value=1.1e+02 Score=32.76 Aligned_cols=122 Identities=11% Similarity=0.251 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHhh---ccCC-chHHHHHHHHHHhhcccccCC-HHHHHHHHHhhCCCCcHHH
Q 002996 363 VQEAIIVIKDIFRRYP-NTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQV 436 (860)
Q Consensus 363 ~~e~i~~l~~i~~~~p-~~~~~~i~~L~~~l---~~~~-~~~~~~~~~wilGEy~~~i~~-~~~~l~~~~~~~~~e~~~v 436 (860)
..|....+..|++... -+.+.-..-+.+.| -..+ -+.-..-+++++-.|.+.-+. +..+++.+++.|+..+..-
T Consensus 233 IaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~K 312 (392)
T 2jak_A 233 IAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPK 312 (392)
T ss_dssp HHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTT
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchH
Confidence 4567777777877652 12222222222222 1111 111134566777777654332 5678888888888877777
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHH---HHHhcccCCCChHHHHHHHHHHH
Q 002996 437 QLQLLTATVKLFLKKPTEGPQQMIQV---VLNNATVETDNPDLRDRAYIYWR 485 (860)
Q Consensus 437 ~~~iLta~~Kl~~~~p~~~~~~~i~~---~l~~~~~~s~~~evrdRA~~y~~ 485 (860)
+...|.-+..+.-..+.++.+..... .+..|. +|.+..|-+||..+|.
T Consensus 313 evlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci-~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 313 EVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHhC
Confidence 77788877777776655433333333 345565 6899999999999994
No 149
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=53.25 E-value=2.2e+02 Score=29.77 Aligned_cols=162 Identities=14% Similarity=0.187 Sum_probs=89.0
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHhhhccChHHHHHHHH-HhhhHHHhhc-CCChhHHHHHHHHHHHHHhhChhhhhc
Q 002996 198 NIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAH 275 (860)
Q Consensus 198 ~ll~~v~~~l~~~n~aVv~~a~~~~~l~~~~~~~~~~~~~~-~~~~~L~~ll-s~~~niry~aL~~l~~l~~~~p~~~~~ 275 (860)
+++..+...-.+.+.|...+.++-+|+. +....+.++. ...-.+...+ .+.-++.-=|+.++..+..+|+.++..
T Consensus 125 eil~~L~~gYe~~diAl~~G~mLRecir---~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvae 201 (341)
T 1upk_A 125 NILFMLLKGYESPEIALNCGIMLRECIR---HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAE 201 (341)
T ss_dssp HHHHHHHHGGGSTTTHHHHHHHHHHHHT---SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHhhccchhHhHHHHHHHHHHH---hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHH
Confidence 4556666666666666555554445543 2222222211 0111122233 345577777888888887777765432
Q ss_pred cceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh-h--h-----hhHHHH
Q 002996 276 EIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK-L--E-----RAAERC 347 (860)
Q Consensus 276 ~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k-~--~-----~~~~~~ 347 (860)
++ ..|.+....+.-.-+.+.++-.+|.+++-+|.+-.. . . -+....
T Consensus 202 fL--------------------------~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~n 255 (341)
T 1upk_A 202 FL--------------------------EQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPEN 255 (341)
T ss_dssp HH--------------------------HHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHH
T ss_pred HH--------------------------HHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHH
Confidence 21 124444444444434444444555555555544331 0 0 012355
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 002996 348 ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLC 389 (860)
Q Consensus 348 v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~ 389 (860)
+..++.||+.....+.-|+.++++-. ..||..-..+...|.
T Consensus 256 Lkl~M~LL~d~sk~Iq~EAFhVFKvF-VANP~K~~~I~~IL~ 296 (341)
T 1upk_A 256 LKLMMNLLRDKSRNIQFEAFHVFKVF-VANPNKTQPILDILL 296 (341)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHH-HHCSSCCHHHHHHHH
T ss_pred HHHHHHHhcCchhchhhhhhhheeee-eeCCCCChHHHHHHH
Confidence 78899999999988999999988744 457887666665554
No 150
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=52.31 E-value=2.5e+02 Score=30.17 Aligned_cols=121 Identities=12% Similarity=0.252 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHhh---ccCC-chHHHHHHHHHHhhcccccCC-HHHHHHHHHhhCCCCcHHH
Q 002996 363 VQEAIIVIKDIFRRYP-NTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQV 436 (860)
Q Consensus 363 ~~e~i~~l~~i~~~~p-~~~~~~i~~L~~~l---~~~~-~~~~~~~~~wilGEy~~~i~~-~~~~l~~~~~~~~~e~~~v 436 (860)
..|....+..|+.... -+.+.-..-|.+.| -... -+.-..-+++++-.|.+.-+. +..+++.+++.|+..++.-
T Consensus 188 IaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~K 267 (403)
T 3fga_B 188 IAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPK 267 (403)
T ss_dssp HHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHH
T ss_pred HHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHH
Confidence 4577888888888752 12222222223322 1111 111235667788887765443 6788999999999999888
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHH---HHHhcccCCCChHHHHHHHHHH
Q 002996 437 QLQLLTATVKLFLKKPTEGPQQMIQV---VLNNATVETDNPDLRDRAYIYW 484 (860)
Q Consensus 437 ~~~iLta~~Kl~~~~p~~~~~~~i~~---~l~~~~~~s~~~evrdRA~~y~ 484 (860)
+...|.-+..+.-..++++.+..... .+..|. +|.+..|-+||..+|
T Consensus 268 evlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci-~S~hfqVAErAL~~w 317 (403)
T 3fga_B 268 EVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHh
Confidence 88899988888876654333333333 344454 688999999999998
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.81 E-value=84 Score=28.69 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----Ch---hhhH-HHHHHHHHhhhcC--
Q 002996 23 LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKIT-EYLCDPLQRCLKD-- 92 (860)
Q Consensus 23 ~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i----~~---~e~~-~~l~~~v~~~l~d-- 92 (860)
.+.-.-+.+-++-....+++-..-++-+|+|=++++||.+.-+||..|-.+ +. .+++ +.++..+.+++..
T Consensus 15 ~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~ 94 (148)
T 1mhq_A 15 SEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKY 94 (148)
T ss_dssp SSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCST
T ss_pred CCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHcccc
Confidence 344444566677777777788888999999999999999999999877543 11 2332 5566667777764
Q ss_pred ----CChHHHHHHHHHHHHHH
Q 002996 93 ----DDPYVRKTAAICVAKLY 109 (860)
Q Consensus 93 ----~~~~VRk~A~~~l~kl~ 109 (860)
.++-||++++..+..-.
T Consensus 95 ~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 95 LGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp TSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 47889998776555433
No 152
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=50.83 E-value=51 Score=29.83 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC
Q 002996 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 99 k~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
-.+.+-+.-+.+..|+.-. +.+..|.+-|..+||.|+..|+.+|..+.++ |+.
T Consensus 23 w~~ileicD~I~~~~~~~k--~a~rai~Krl~~~n~~~ql~AL~LLe~~vkN-cG~ 75 (140)
T 3ldz_A 23 WGLILDICDKVGQSRTGPK--DCLRSIMRRVNHKDPHVAMQALTLLGACVSN-CGK 75 (140)
T ss_dssp HHHHHHHHHHHTTSTTHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCH
T ss_pred HHHHHHHHHHHHCCCcCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-cCH
Confidence 4556667777776665444 3667788888899999999999988666655 553
No 153
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=50.78 E-value=2.3e+02 Score=31.00 Aligned_cols=137 Identities=12% Similarity=0.248 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHhh---ccCC-chHHHHHHHHHHhhcccccCC-HHHHHHHHHhhCCCCcHHH
Q 002996 363 VQEAIIVIKDIFRRYP-NTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQV 436 (860)
Q Consensus 363 ~~e~i~~l~~i~~~~p-~~~~~~i~~L~~~l---~~~~-~~~~~~~~~wilGEy~~~i~~-~~~~l~~~~~~~~~e~~~v 436 (860)
..|....+..|+.... -+.+.-..-+.+.| -..+ -+.-..-+++++-.|.+.-+. +..+++.++..|+..++.-
T Consensus 221 IaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~K 300 (449)
T 2npp_B 221 IAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPK 300 (449)
T ss_dssp HHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchH
Confidence 4577778888887642 12222222222322 1111 111234567787777765433 6788999999999988888
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHH---HHHHHhcccCCCChHHHHHHHHHHH------HhcCCHHHHHHhhhc
Q 002996 437 QLQLLTATVKLFLKKPTEGPQQMI---QVVLNNATVETDNPDLRDRAYIYWR------LLSTDPEAAKDVVLA 500 (860)
Q Consensus 437 ~~~iLta~~Kl~~~~p~~~~~~~i---~~~l~~~~~~s~~~evrdRA~~y~~------ll~~~~~~~~~~v~~ 500 (860)
+...|.-+..+.-..++++.+... -+.+..|. +|.+..|-+||..+|. +++.+.+...-+++.
T Consensus 301 evlFL~eleeile~~~~~ef~~i~~~lF~~la~ci-~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p 372 (449)
T 2npp_B 301 EVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 372 (449)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHH
Confidence 888888888888766543333333 33345565 6899999999999983 445455544444443
No 154
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=49.42 E-value=56 Score=30.70 Aligned_cols=97 Identities=8% Similarity=-0.009 Sum_probs=67.8
Q ss_pred HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh----hhH-HHHHHHHH
Q 002996 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EYLCDPLQ 87 (860)
Q Consensus 16 ~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~---~~----e~~-~~l~~~v~ 87 (860)
++......+.-.-..+-++-+.+.+++-...++-.|+|=++++|+.++-+||..|-.+. .. +++ +.+...+.
T Consensus 20 kATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 20 KATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp HHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 45554445555556677777877888888899999999999999999999998775431 11 222 34455666
Q ss_pred hhhcC------CChHHHHHHHHHHHHHHhhc
Q 002996 88 RCLKD------DDPYVRKTAAICVAKLYDIN 112 (860)
Q Consensus 88 ~~l~d------~~~~VRk~A~~~l~kl~~~~ 112 (860)
+++.. .++-||++++..+..-....
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 76652 57899999887776554433
No 155
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=47.00 E-value=27 Score=29.76 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=44.7
Q ss_pred CCeeEEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeecCCCC
Q 002996 655 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMS 716 (860)
Q Consensus 655 ~~~~~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~~~~~ 716 (860)
+..+.+.+.|+|--+.++++-.+.++.. |+.-......+.++||+..+..+.+....+..
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~--GL~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~ 78 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGS--GLQRPKILNVGDIGGNETVTLRQSFVPVRPGP 78 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEET--TTEEEEEEEECCBCTTCEEEEEEEECCCSCSS
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECC--CCCcceEEEcCcCCCCCEEEEEEEEecCcccc
Confidence 4567899999999999999988887753 66333334467899999988887776554433
No 156
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.68 E-value=1e+02 Score=28.45 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=44.6
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHhhcCCCC
Q 002996 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRP 154 (860)
Q Consensus 84 ~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~-D~d~~V~~~al~~l~~i~~~~~~~ 154 (860)
..|.++-....+----...+-+.-+.+..++... +.+..|.+-|. ..|+.|+..|+.+|..+.++ |+.
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k--~a~ral~krl~~~~n~~v~l~AL~LLd~~vkN-cG~ 87 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETEEGPK--DALRAVKKRIVGNKNFHEVMLALTVLETCVKN-CGH 87 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-SCH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-hCH
Confidence 3445555443322235556667777776665444 36677888886 58999999999998777766 443
No 157
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=43.48 E-value=71 Score=31.67 Aligned_cols=70 Identities=13% Similarity=0.029 Sum_probs=49.3
Q ss_pred HHHHHhhhcCCChHHHHHHHH----HHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCC
Q 002996 83 CDPLQRCLKDDDPYVRKTAAI----CVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (860)
Q Consensus 83 ~~~v~~~l~d~~~~VRk~A~~----~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~ 152 (860)
.+.+.+-+.|.+.++|+.|+. -+..+..+.++.-.-..+.+.+...+.|.+..|.-+.--+|.++...++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 345677888999999999999 4454332322211112466777778889999998888888888887765
No 158
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=40.33 E-value=1.4e+02 Score=35.57 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcc---cccccccHHHHHHHhhcC---CChhHHHHHHHHHHHHhh
Q 002996 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISD---NNPMVVANAVAALAEIEE 149 (860)
Q Consensus 76 ~e~~~~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p---~~~~~~~~~~~l~~lL~D---~d~~V~~~al~~l~~i~~ 149 (860)
.++++.+.+.+..++-+++..|...+..|+..+..+.| +++-+ ..+++++..|.. ..+.=+.+|+.+|..++.
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999 98864 577888888865 455556666776666543
No 159
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=38.61 E-value=47 Score=40.62 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=76.0
Q ss_pred HHHhcCCCCcHHHHHHHHHHhhcCCCC-HHHHhHHHHHhcCC--Ch-h-hhHHHHHHHHHhhhcC------------CCh
Q 002996 33 LINYAKSQPDLAILAVNTFVKDSQDPN-PLIRALAVRTMGCI--RV-D-KITEYLCDPLQRCLKD------------DDP 95 (860)
Q Consensus 33 l~~~~~~~~el~~L~in~l~kDl~~~n-~~ir~lALr~l~~i--~~-~-e~~~~l~~~v~~~l~d------------~~~ 95 (860)
..+++--.++.-..+.+.+.+-|.|++ ..||-.|-.+|+.+ +. + ...+.++...++.+.. ++-
T Consensus 830 f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~ 909 (997)
T 1vsy_5 830 SAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTD 909 (997)
T ss_dssp HHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHC
T ss_pred HHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHH
Confidence 344444455555566788888999999 99999999999877 23 2 4444555555554422 111
Q ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcC--CChhHHHHHH-HHHHHHh
Q 002996 96 YVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD--NNPMVVANAV-AALAEIE 148 (860)
Q Consensus 96 ~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D--~d~~V~~~al-~~l~~i~ 148 (860)
-.|-.|++++.-+..-.|=.++.+.|+|.+...|.. .||+.+..++ ..+.+..
T Consensus 910 ~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseFk 965 (997)
T 1vsy_5 910 IKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFK 965 (997)
T ss_dssp HHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 466788999999999999888534699887776653 3455554433 3444443
No 160
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.15 E-value=2.4e+02 Score=25.78 Aligned_cols=98 Identities=8% Similarity=0.002 Sum_probs=62.5
Q ss_pred hHHHh-HhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCC----h---hhhH-H
Q 002996 11 FTDVV-NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR----V---DKIT-E 80 (860)
Q Consensus 11 f~~vi-~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~-~~n~~ir~lALr~l~~i~----~---~e~~-~ 80 (860)
+-..| ++......+.-.-.-+-++-..+.+++-..-++-.|+|=++ ++|+.++-+||..|-.+. . .+++ +
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 34444 34444444455555666777777778888999999999998 589999988888775321 1 1222 3
Q ss_pred HHHHH-HHhhhc---CCChHHHHHHHHHHHHH
Q 002996 81 YLCDP-LQRCLK---DDDPYVRKTAAICVAKL 108 (860)
Q Consensus 81 ~l~~~-v~~~l~---d~~~~VRk~A~~~l~kl 108 (860)
.+... +.+++. +++.-||++++..+..-
T Consensus 97 ~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 97 DFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 34444 455553 24558998887665543
No 161
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=32.59 E-value=4.5e+02 Score=27.40 Aligned_cols=112 Identities=15% Similarity=0.259 Sum_probs=60.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCcccH--------HHHHHHHHHhhccCCchHHHHHHHHHHhhcccccC-----
Q 002996 350 VLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY--------ESIIATLCESLDTLDEPEAKASMIWIIGEYAERID----- 416 (860)
Q Consensus 350 ~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~--------~~~i~~L~~~l~~~~~~~~~~~~~wilGEy~~~i~----- 416 (860)
.+.+.+....=.|..++...+++++.+++..- +.....+-..+.+ ..--.++-.+-+|||.--.-.
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVTkRQSlKLLgelLldr~N~~vM 246 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVTKRQSLKLLGELLLDRHNFTIM 246 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHhCchHHHHH
Confidence 44555555555678888888888887765321 1112222222221 222345556667777532111
Q ss_pred ----CHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002996 417 ----NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLN 465 (860)
Q Consensus 417 ----~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~ 465 (860)
+.++-|..+.+-+.+.+..+|.... -+.|+|..+|.. .+-|..+|.
T Consensus 247 ~~Yis~~~nLkl~M~LL~d~sk~Iq~EAF-hVFKvFVANP~K--~~~I~~IL~ 296 (341)
T 1upk_A 247 TKYISKPENLKLMMNLLRDKSRNIQFEAF-HVFKVFVANPNK--TQPILDILL 296 (341)
T ss_dssp HHHTTCHHHHHHHHHHTTCSCHHHHHHHH-HHHHHHHHCSSC--CHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHhcCchhchhhhhh-hheeeeeeCCCC--ChHHHHHHH
Confidence 1345566666667777777766554 246777777764 333444443
No 162
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=30.18 E-value=2.7e+02 Score=24.42 Aligned_cols=49 Identities=4% Similarity=0.129 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 002996 327 RKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 375 (860)
Q Consensus 327 ~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~ 375 (860)
++.|..+...+..+...++..++++.+-+......-.=..+..+-+|++
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ 69 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 69 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence 3455566666666666666677777666665443222223334444444
No 163
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=30.07 E-value=1.2e+02 Score=26.37 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=43.0
Q ss_pred EEEEEEEecCCCCccceeeeeccCccCcccCCCCCCCccCCCCeeeEEEeeeecCCCCCCCCCcceEEEEe
Q 002996 659 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVK 729 (860)
Q Consensus 659 ~l~l~~~N~s~~~lt~f~v~i~~n~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~~~~~~~~~~~~l~~~~~ 729 (860)
.+.+.+.||++++ ..|.+.+... .|+..... ..-.++||+.....+.+.+........ ...+.|.+.
T Consensus 34 ~Ytlki~Nkt~~~-~~~~l~v~g~-~~l~~~g~-~~i~v~~g~~~~~~v~v~~~~~~~~~~-~~~i~f~v~ 100 (118)
T 2r39_A 34 TYTLKVINKTQQV-QEYNLDVKGL-NDVSWYGK-QTIQVEPGEVLNLPMSLGADPDKLNSA-ITTIQFILT 100 (118)
T ss_dssp EEEEEEEECSSSC-EEEEEEEESC-SSCEEESC-CEEEECTTCEEEEEEEEEECGGGCSSS-EEEEEEEEE
T ss_pred EEEEEEEECCCCC-EEEEEEEeCC-cccEEeCC-CcEEECCCCEEEEEEEEEEChHHccCC-ceeEEEEEE
Confidence 5788999999988 5577777643 24554332 123788999888888887765433221 234566665
No 164
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=28.10 E-value=1.2e+02 Score=30.09 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=45.3
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 002996 315 KEYATEVDVDFVRKAVRAIGRCAIKL----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 375 (860)
Q Consensus 315 ~~y~~~~d~~~~~~~i~~I~~la~k~----~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~ 375 (860)
.+|+...+.+-+..++..+..++.+. ...+..|+.++-+++..+.+|+..| +.+|..|+.
T Consensus 135 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E-~~Rl~~~l~ 198 (240)
T 2qc7_A 135 GEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASE-MTRIARLIE 198 (240)
T ss_dssp HHHHHSCSHHHHHHHTTHHHHHTTCSCHHHHHHHHHHHHHHHHHHHSCTTSHHHH-HHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHh
Confidence 46777666667777777777665442 2567889999999998888898888 678888885
No 165
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=26.13 E-value=1e+03 Score=29.57 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhhChhhhhccceEEEecc-CCc-HHHHHHHHHHHHHhcCcccHH-HHHHHHHHhhhh--ccHH-----
Q 002996 255 QYVALRNINLIVQRRPTILAHEIKVFFCKY-NDP-IYVKMEKLEIMIKLASDRNID-QVLLEFKEYATE--VDVD----- 324 (860)
Q Consensus 255 ry~aL~~l~~l~~~~p~~~~~~~~~~~~l~-~d~-~~Ik~~~L~lL~~l~~~~Nv~-~Iv~eL~~y~~~--~d~~----- 324 (860)
.-.+|-+|..-+..++++...+++.|.+.. .+| ...---.+.+|+.|+.-...+ .+++-|+.-+.. .|.+
T Consensus 268 EgTVL~HI~~Aik~D~~Lgre~LK~~K~~~~~~p~~~l~PF~lalLLsvarI~Rf~e~v~d~Lk~~v~k~~~d~~~~~~S 347 (1308)
T 3s51_A 268 EGTVILHIVFAIKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQRFEEQVFDLLKTSVVKSFKDLQLLQGS 347 (1308)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHCCSSTHHHHHHCCHHHHHHHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHhhhcccCccccCChHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence 344677776667777877766666654432 222 334556777888888765444 344433332211 1111
Q ss_pred -HHHHH-------HHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhh------h-----------HHHHH----HHHH
Q 002996 325 -FVRKA-------VRAIGRCAIK----LERAAERCISVLLELIKIKVNY------V-----------VQEAI----IVIK 371 (860)
Q Consensus 325 -~~~~~-------i~~I~~la~k----~~~~~~~~v~~ll~ll~~~~~~------v-----------~~e~i----~~l~ 371 (860)
+-+.. -..|...... -.....-.++.-+-|+...|.. . .+.+| ..+.
T Consensus 348 ~Wlr~l~p~~~~v~~~ll~~V~~S~~g~d~Vv~gLV~LgF~LLds~~~k~~~~g~~~e~~~~~~~~p~q~a~~LG~~IL~ 427 (1308)
T 3s51_A 348 KFLQTLVPQRTCVSTMILEVVRNSVHSWDHVTQGLIEFGFILMDSYGPKKILDGKAVEIGTSLSKMTNQHACKLGANILL 427 (1308)
T ss_dssp HHHHHHSCCCCCHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHSCCTTSCC---------CTHHHHHHHHHHHHHHH
T ss_pred HHHHhccCccchHHHHHHHHHhcCcccchhhHHHHHHHHHHHHhccCccccCCCcccccccccccChHHHHHHHHHHHHH
Confidence 11111 1112111111 1122344555555556532211 0 01112 2355
Q ss_pred HHHHhCcccHHHHHHHHHHhhccC---CchHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHh
Q 002996 372 DIFRRYPNTYESIIATLCESLDTL---DEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLF 448 (860)
Q Consensus 372 ~i~~~~p~~~~~~i~~L~~~l~~~---~~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~ 448 (860)
.++..++..+..|++++.+.+-.- ..+.....+..++-.+.-.+.+... +....+.+..-+..+-..++.|+.=+.
T Consensus 428 ~~Fk~h~~~r~~Iieqi~~RIv~~~~~~~s~~idlLs~lv~~~p~~l~e~sk-l~e~~dyl~~lp~~~a~~Ll~al~PLi 506 (1308)
T 3s51_A 428 ETFKIHEMIRQEILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPLILQNCSK-VTETFDYLTFLPLQTVQGLLKAVQPLL 506 (1308)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHCHHHHSSCHH-HHGGGGGTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHhccHHHHhhhH-HHHHHHHHhcCCHHHHHHHHHHHhHHH
Confidence 666677777777777777654211 1122222222222222222222222 233445566667777777899998888
Q ss_pred hcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 002996 449 LKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYW 484 (860)
Q Consensus 449 ~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~ 484 (860)
.-.+. +++.+.-+|+.+.. +.+.+.|.-|..-.
T Consensus 507 k~s~~--lrD~lIlvLRKamf-~re~~~R~~AV~Gf 539 (1308)
T 3s51_A 507 KISMS--MRDSLILVLRKAMF-ASQLDARKSAVAGF 539 (1308)
T ss_dssp TTCHH--HHHHHHHHHHHHTT-CSSHHHHHHHHHHH
T ss_pred hcCHH--HHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 77664 78889999998875 56788888887644
No 166
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=24.08 E-value=7.1e+02 Score=28.45 Aligned_cols=88 Identities=10% Similarity=0.050 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHh-h-hhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHH
Q 002996 305 RNIDQVLLEFKEY-A-TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 382 (860)
Q Consensus 305 ~Nv~~Iv~eL~~y-~-~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~ 382 (860)
.....+|..++.+ - ...+..|++.-+.=|+.|+.-.+.....|+..|+..+...... ...+=..++.|++-.|-...
T Consensus 132 ~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~~-~~~~H~~L~~Il~lvP~s~~ 210 (649)
T 3tj1_A 132 SRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIKQ-TVCHHDMLKYFLRMIPSSMG 210 (649)
T ss_dssp GGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHCGGGHH
T ss_pred hhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCcc-cHHHHHHHHHHHHHcCCCHH
Confidence 3455666666655 1 2446677777777777776655555555555554444322111 11122255566666666655
Q ss_pred HHHHHHHHhhc
Q 002996 383 SIIATLCESLD 393 (860)
Q Consensus 383 ~~i~~L~~~l~ 393 (860)
.+...|.+.+-
T Consensus 211 ~L~~iL~~~FP 221 (649)
T 3tj1_A 211 FIDTYLAKFFP 221 (649)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhCC
Confidence 55555555543
No 167
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=21.98 E-value=8.3e+02 Score=28.61 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=53.6
Q ss_pred HHHHHhcCc--ccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 002996 296 EIMIKLASD--RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVI 370 (860)
Q Consensus 296 ~lL~~l~~~--~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l 370 (860)
.++.++++. .|++.-+.+|...+.+.....+..+++.+-.|+...|... -+..+++.++..+...+..+++..+
T Consensus 14 ~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt-~vyAaLVgllN~k~pe~G~~lv~~l 89 (771)
T 1h2v_C 14 SLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKL-TIYTTLVGLLNARNYNFGGEFVEAM 89 (771)
T ss_dssp HHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHcCChhHHHHHHHHH
Confidence 467777764 5567777777777765556788888999999998887764 4557788888887766666665543
No 168
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=21.59 E-value=4.7e+02 Score=26.86 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHHHHHHhhcccccc
Q 002996 93 DDPYVRKTAAICVAKLYDINAELVE 117 (860)
Q Consensus 93 ~~~~VRk~A~~~l~kl~~~~p~~~~ 117 (860)
..+-+|..|+..+.-+.|-+|..++
T Consensus 82 ~~~~~rE~aarII~ssLRNNP~Al~ 106 (315)
T 3qml_C 82 LPLTLRELSTRVITSCLRNNPPVVE 106 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChhHHHHHHHHHHHHHccCHHHHH
Confidence 4455777777777777777776554
No 169
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=21.25 E-value=2.1e+02 Score=29.96 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=19.5
Q ss_pred EEEEEEeeCCeeEEEEEEEecCCCCc
Q 002996 647 IGAELTRQDGQVFYSMLFENNTQTPL 672 (860)
Q Consensus 647 I~~~~~~~~~~~~l~l~~~N~s~~~l 672 (860)
.++.|.-.+..+.+.++++|+++.++
T Consensus 255 ~~A~Y~vpgR~l~~~~~VtN~g~~pv 280 (382)
T 1yew_A 255 EDATYRVPGRAMRMKLTITNHGNSPI 280 (382)
T ss_dssp EEEEEESSCSEEEEEEEEEECSSSCE
T ss_pred eccEEecCCcEEEEEEEEEcCCCCce
Confidence 34555545678999999999988664
No 170
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.82 E-value=2.7e+02 Score=27.19 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=43.2
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcC
Q 002996 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (860)
Q Consensus 86 v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~ 151 (860)
|.++-....+--=-.+++-+.-+.+..++--. +.+..|.+-|..+||.|+..|+.+|..+.++-
T Consensus 13 i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k--~a~ral~krl~~~n~~v~l~aL~LLe~~vkNc 76 (226)
T 3zyq_A 13 LDKATSQLLLETDWESILQICDLIRQGDTQAK--YAVNSIKKKVNDKNPHVALYALEVMESVVKNC 76 (226)
T ss_dssp HHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 44444433322234566777777776665443 36778888888999999999999987777663
Done!