BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002997
(859 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQ 853
+ ER C VC+ +E SVVF+PC H V+CQ+C + CP CR I+ ++
Sbjct: 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQEC-----APSLRKCPICRGIIKGTVR 341
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQ 853
+ ER C VC+ +E S+VF+PC H V+C+ C + CP CRS I+ ++
Sbjct: 22 QEERTCKVCMDKEVSIVFIPCGHLVVCKDC-----APSLRKCPICRSTIKGTVR 70
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQ 853
+ ER C VCL S+VF+PC H V C +C G+ CP CR+P++ R++
Sbjct: 11 QEERTCKVCLDRAVSIVFVPCGHLV-CAEC-----APGLQLCPICRAPVRSRVR 58
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPI--QQRI 852
+ E+ C +C+ ++VF+PC H V C++C E ++ CP C + I +Q+I
Sbjct: 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAE-----AVDKCPMCYTVITFKQKI 72
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 818 LPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850
+PC H V C C LHEK+G CP C P+Q+
Sbjct: 18 IPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQR 49
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPI--QQRI 852
+ E+ C +C+ ++VF+PC H V C++C E +K CP C + I +Q+I
Sbjct: 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDK-----CPMCYTVITFKQKI 71
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848
+ E+ C +C+ ++VF+PC H V C++C E ++ CP C + I
Sbjct: 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAE-----AVDKCPMCYTVI 65
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 805 CVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850
C+VC EE + F PC H V C+ C + CP CRS ++
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESC-----AAQLQSCPVCRSRVEH 61
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 803 RECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRI 852
++CVVC + V LPC H LC C + ++ CP CR +Q+
Sbjct: 16 KDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQ-----CPMCRQFVQESF 60
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 753 AALRGSVDGGFM-PDGKIENPAMKKGSK-IPXXXXXXXXXXXXXXXXXXKRERECVVCLA 810
A + GS +G ++ PDG+ NP + + P + C +C
Sbjct: 287 ALIDGSREGFYLYPDGRSYNPDLTGLCEPTPHDHIKVTQEQYELYCEMGSTFQLCKICAE 346
Query: 811 EEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849
+K V PC H ++C C ++ CP CR I+
Sbjct: 347 NDKDVKIEPCGH-LMCTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 805 CVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849
C +C +K V PC H ++C C ++ CP CR I+
Sbjct: 29 CKICAENDKDVKIEPCGH-LMCTSCLTAWQESDGQGCPFCRCEIK 72
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 546 DQAELKALRHEKQEVEQCQKDKQILE----ENTVKRLSEMEFALTNATAQVERSSSTVHT 601
D ++KA E++ +Q Q++K LE E K+ E + L ++ERS + +
Sbjct: 301 DVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANL-- 358
Query: 602 LEMEHSVLKKEMEAANLRAAKSAVSC-QEAFEREQKALKNAQSLEA-QRVLLREELATEK 659
LE + +L+ E + L+AAK + Q + + L+ +++EA +R L +E+ ++
Sbjct: 359 LEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQ 418
Query: 660 QKVAVLQQEI 669
++V+ +QQE+
Sbjct: 419 EEVSRIQQEV 428
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 753 AALRGSVDGGFM-PDGKIENPAMKKGSK-IPXXXXXXXXXXXXXXXXXXKRERECVVCLA 810
A + G +G ++ PDG+ +NP + + P + C +C
Sbjct: 281 ALIDGFREGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAE 340
Query: 811 EEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849
+K V PC H ++C C ++ CP CR I+
Sbjct: 341 NDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 753 AALRGSVDGGFM-PDGKIENPAMKKGSK-IPXXXXXXXXXXXXXXXXXXKRERECVVCLA 810
A + G +G ++ PDG+ +NP + + P + C +C
Sbjct: 281 ALIDGFREGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAE 340
Query: 811 EEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849
+K V PC H ++C C ++ CP CR I+
Sbjct: 341 NDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 753 AALRGSVDGGFM-PDGKIENPAMKKGSK-IPXXXXXXXXXXXXXXXXXXKRERECVVCLA 810
A + G +G ++ PDG+ +NP + + P + C +C
Sbjct: 283 ALIDGFREGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELXCEMGSTFQLCKICAE 342
Query: 811 EEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849
+K V PC H ++C C ++ CP CR I+
Sbjct: 343 NDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 753 AALRGSVDGGFM-PDGKIENPAMKKGSK-IPXXXXXXXXXXXXXXXXXXKRERECVVCLA 810
A + G +G ++ PDG+ +NP + + P + C +C
Sbjct: 283 ALIDGFREGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQFELXCEMGSTFQLCKICAE 342
Query: 811 EEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849
+K V PC H ++C C ++ CP CR I+
Sbjct: 343 NDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 805 CVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849
C +C +K V PC H ++C C ++ CP CR I+
Sbjct: 27 CKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIK 70
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 805 CVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849
C +C +K V PC H ++C C ++ CP CR I+
Sbjct: 30 CKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 820 CAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ---RIQV 854
C H LC+ C +L +G +CP C +P+++ R+Q+
Sbjct: 26 CGH-TLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 804 ECVVCLAEEKSVVFLPCAHQVLCQKC--NELHEKQGMNDCPSCRSPIQQR-IQ--VRFAQ 858
EC +CL K V C H + C+ C L++K+G + CP C++ I +R +Q RF+Q
Sbjct: 23 ECPICLELIKEPVSTKCDH-IFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 805 CVVCLAEEKS--VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRF 856
CV+C K+ +V H + C C + +K+ CP CR PIQ + F
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQMIVLTYF 62
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 805 CVVCLAEEKS--VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRF 856
CV+C K+ +V H + C C + +K+ CP CR PIQ + F
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQMIVLTYF 63
>pdb|2R8J|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8J|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8K|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8K|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
Length = 554
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 85 EWDDPIVCALGELLSSGLNTLFRNVIKQISECGYSEDDATKNIAR 129
+WDD ++ ALG + G+ ++++ + CG S +TKN+ +
Sbjct: 255 DWDD-VILALGSQVCKGIRDSIKDILGYTTSCGLS---STKNVCK 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,864,709
Number of Sequences: 62578
Number of extensions: 834252
Number of successful extensions: 1715
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1665
Number of HSP's gapped (non-prelim): 75
length of query: 859
length of database: 14,973,337
effective HSP length: 107
effective length of query: 752
effective length of database: 8,277,491
effective search space: 6224673232
effective search space used: 6224673232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)