Query 002997
Match_columns 859
No_of_seqs 304 out of 1526
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 14:58:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0250 DNA repair protein RAD 100.0 5.1E-27 1.1E-31 279.1 29.4 188 319-562 49-269 (1074)
2 KOG0978 E3 ubiquitin ligase in 99.8 1.6E-16 3.4E-21 186.0 32.6 306 501-855 385-697 (698)
3 TIGR02168 SMC_prok_B chromosom 99.1 1.4E-07 3.1E-12 119.1 33.8 91 370-465 46-152 (1179)
4 KOG4172 Predicted E3 ubiquitin 98.9 1.4E-10 3.1E-15 94.3 -1.2 53 803-855 8-60 (62)
5 PF13920 zf-C3HC4_3: Zinc fing 98.9 9.5E-10 2.1E-14 89.2 2.9 48 802-850 2-49 (50)
6 KOG4265 Predicted E3 ubiquitin 98.8 3.4E-09 7.4E-14 116.0 4.0 58 800-858 288-345 (349)
7 KOG0979 Structural maintenance 98.8 1.6E-06 3.5E-11 104.7 25.4 311 333-685 39-357 (1072)
8 TIGR02169 SMC_prok_A chromosom 98.7 7.9E-06 1.7E-10 103.8 33.1 26 364-389 40-65 (1164)
9 COG1196 Smc Chromosome segrega 98.7 8.4E-06 1.8E-10 104.5 32.6 94 366-465 43-152 (1163)
10 PLN03208 E3 ubiquitin-protein 98.7 1.7E-08 3.8E-13 103.1 5.7 59 797-856 13-88 (193)
11 PRK11637 AmiB activator; Provi 98.6 5.5E-05 1.2E-09 87.2 30.8 51 628-678 162-212 (428)
12 PF15227 zf-C3HC4_4: zinc fing 98.6 3.6E-08 7.8E-13 77.6 3.2 39 805-844 1-42 (42)
13 KOG0320 Predicted E3 ubiquitin 98.5 3.7E-08 8E-13 98.6 2.9 53 802-856 131-187 (187)
14 KOG0317 Predicted E3 ubiquitin 98.5 5.4E-08 1.2E-12 103.9 3.8 51 800-852 237-287 (293)
15 PHA02929 N1R/p28-like protein; 98.5 6.6E-08 1.4E-12 102.5 4.2 56 800-857 172-235 (238)
16 TIGR02169 SMC_prok_A chromosom 98.5 0.00031 6.8E-09 89.4 36.2 11 455-465 140-150 (1164)
17 TIGR02168 SMC_prok_B chromosom 98.4 0.00045 9.7E-09 87.8 36.8 12 4-15 29-40 (1179)
18 PRK11637 AmiB activator; Provi 98.4 0.00022 4.8E-09 82.2 31.0 55 573-627 79-133 (428)
19 PF13923 zf-C3HC4_2: Zinc fing 98.4 1.5E-07 3.2E-12 72.6 2.7 38 805-844 1-39 (39)
20 KOG0823 Predicted E3 ubiquitin 98.4 1.9E-07 4.2E-12 97.2 3.8 57 800-857 45-105 (230)
21 PRK03918 chromosome segregatio 98.3 0.00047 1E-08 86.0 32.6 34 370-406 46-79 (880)
22 PHA02926 zinc finger-like prot 98.3 2.5E-07 5.4E-12 95.8 3.1 58 797-855 165-236 (242)
23 TIGR00599 rad18 DNA repair pro 98.3 3.2E-07 6.9E-12 103.7 3.5 53 796-850 20-72 (397)
24 KOG4275 Predicted E3 ubiquitin 98.3 7.5E-08 1.6E-12 102.4 -2.3 50 802-856 300-349 (350)
25 COG1579 Zn-ribbon protein, pos 98.3 0.00087 1.9E-08 71.5 27.5 72 542-613 11-82 (239)
26 PRK02224 chromosome segregatio 98.2 0.0015 3.3E-08 81.7 34.1 23 507-529 473-495 (880)
27 KOG0980 Actin-binding protein 98.2 0.0062 1.3E-07 73.8 36.9 43 505-547 329-371 (980)
28 PF00261 Tropomyosin: Tropomyo 98.2 0.0017 3.6E-08 69.5 29.0 114 577-690 72-185 (237)
29 smart00504 Ubox Modified RING 98.2 1.1E-06 2.4E-11 73.9 3.8 46 803-850 2-47 (63)
30 PF00097 zf-C3HC4: Zinc finger 98.2 9.7E-07 2.1E-11 68.3 2.8 39 805-844 1-41 (41)
31 PF13639 zf-RING_2: Ring finge 98.2 7.9E-07 1.7E-11 70.2 2.0 40 804-845 2-44 (44)
32 cd00162 RING RING-finger (Real 98.2 1.8E-06 4E-11 66.4 3.6 44 804-848 1-45 (45)
33 KOG0287 Postreplication repair 98.1 6.4E-07 1.4E-11 97.0 1.3 51 798-850 19-69 (442)
34 KOG0994 Extracellular matrix g 98.1 0.0016 3.4E-08 80.0 29.4 83 545-627 1539-1621(1758)
35 COG1196 Smc Chromosome segrega 98.1 0.0055 1.2E-07 79.1 36.7 39 575-613 736-774 (1163)
36 COG5432 RAD18 RING-finger-cont 98.1 9.2E-07 2E-11 94.1 1.9 51 798-850 21-71 (391)
37 KOG0161 Myosin class II heavy 98.1 0.0029 6.2E-08 83.4 33.5 68 640-707 1056-1123(1930)
38 KOG2164 Predicted E3 ubiquitin 98.1 1.4E-06 3E-11 99.5 3.3 55 802-857 186-246 (513)
39 PF07888 CALCOCO1: Calcium bin 98.1 0.015 3.2E-07 68.6 36.1 27 663-689 335-361 (546)
40 smart00184 RING Ring finger. E 98.1 2.7E-06 5.8E-11 63.2 3.8 39 805-844 1-39 (39)
41 PF00261 Tropomyosin: Tropomyo 98.1 0.006 1.3E-07 65.2 30.5 154 518-682 3-163 (237)
42 KOG0971 Microtubule-associated 98.0 0.0048 1E-07 74.6 30.5 112 577-688 319-438 (1243)
43 PRK02224 chromosome segregatio 98.0 0.008 1.7E-07 75.3 34.4 23 505-527 478-500 (880)
44 COG4942 Membrane-bound metallo 98.0 0.0058 1.2E-07 69.8 29.7 43 624-666 149-191 (420)
45 KOG0161 Myosin class II heavy 98.0 0.011 2.4E-07 78.2 36.1 89 597-685 943-1031(1930)
46 PF14634 zf-RING_5: zinc-RING 98.0 4.4E-06 9.6E-11 66.1 3.4 41 804-846 1-44 (44)
47 KOG1571 Predicted E3 ubiquitin 98.0 1.4E-06 3E-11 95.9 0.6 54 798-856 301-354 (355)
48 PF09726 Macoilin: Transmembra 98.0 0.00024 5.2E-09 86.3 19.6 141 599-746 420-574 (697)
49 PF07888 CALCOCO1: Calcium bin 98.0 0.041 8.8E-07 65.0 36.1 21 253-273 16-36 (546)
50 KOG0250 DNA repair protein RAD 98.0 0.019 4.1E-07 71.5 34.6 46 512-557 206-251 (1074)
51 PF12128 DUF3584: Protein of u 98.0 0.018 3.9E-07 74.7 36.3 53 694-746 825-877 (1201)
52 PF09726 Macoilin: Transmembra 97.9 0.0067 1.4E-07 74.0 29.7 100 640-746 546-651 (697)
53 KOG0933 Structural maintenance 97.9 0.022 4.8E-07 70.0 32.2 29 718-746 907-935 (1174)
54 PF13445 zf-RING_UBOX: RING-ty 97.9 6.2E-06 1.3E-10 65.4 1.8 36 805-842 1-43 (43)
55 COG5574 PEX10 RING-finger-cont 97.9 6.9E-06 1.5E-10 87.1 2.7 49 800-849 213-262 (271)
56 KOG2177 Predicted E3 ubiquitin 97.9 5.3E-06 1.2E-10 87.1 1.8 48 797-846 8-55 (386)
57 KOG0824 Predicted E3 ubiquitin 97.9 5.4E-06 1.2E-10 89.2 1.8 50 802-852 7-56 (324)
58 KOG1100 Predicted E3 ubiquitin 97.9 4.6E-06 1E-10 87.2 1.3 57 795-856 151-207 (207)
59 KOG1029 Endocytic adaptor prot 97.8 0.02 4.3E-07 68.5 30.2 97 587-683 420-516 (1118)
60 KOG0980 Actin-binding protein 97.8 0.024 5.2E-07 68.9 30.9 18 510-527 359-376 (980)
61 PHA02562 46 endonuclease subun 97.8 0.043 9.3E-07 65.2 33.0 15 364-378 44-58 (562)
62 TIGR00570 cdk7 CDK-activating 97.8 1.7E-05 3.6E-10 86.9 3.8 48 802-850 3-55 (309)
63 PF04564 U-box: U-box domain; 97.8 2.1E-05 4.6E-10 69.0 3.6 49 801-850 3-51 (73)
64 KOG0995 Centromere-associated 97.7 0.056 1.2E-06 63.5 31.3 38 710-747 471-508 (581)
65 PF10174 Cast: RIM-binding pro 97.7 0.092 2E-06 64.8 33.9 164 505-669 234-408 (775)
66 KOG0977 Nuclear envelope prote 97.7 0.012 2.5E-07 69.4 25.2 92 660-763 296-390 (546)
67 COG4372 Uncharacterized protei 97.7 0.14 3E-06 57.6 31.9 109 490-615 61-169 (499)
68 TIGR00606 rad50 rad50. This fa 97.7 0.033 7.2E-07 73.0 32.0 43 640-682 882-924 (1311)
69 COG1579 Zn-ribbon protein, pos 97.6 0.018 4E-07 61.6 24.0 87 645-749 88-174 (239)
70 TIGR00606 rad50 rad50. This fa 97.6 0.057 1.2E-06 70.8 33.4 46 577-622 882-927 (1311)
71 PF12128 DUF3584: Protein of u 97.6 0.096 2.1E-06 68.2 34.7 30 718-747 505-534 (1201)
72 PRK04863 mukB cell division pr 97.6 0.096 2.1E-06 69.0 34.4 162 535-696 308-485 (1486)
73 KOG1785 Tyrosine kinase negati 97.6 3.3E-05 7E-10 85.5 2.7 52 803-855 370-422 (563)
74 KOG1029 Endocytic adaptor prot 97.6 0.062 1.4E-06 64.5 29.3 32 114-153 27-59 (1118)
75 KOG0996 Structural maintenance 97.6 0.16 3.4E-06 63.9 33.9 132 574-705 424-559 (1293)
76 PRK03918 chromosome segregatio 97.6 0.19 4.2E-06 63.0 35.8 12 453-464 131-142 (880)
77 KOG0979 Structural maintenance 97.6 0.019 4.1E-07 70.8 25.3 185 496-701 141-331 (1072)
78 PRK04863 mukB cell division pr 97.5 0.088 1.9E-06 69.4 33.1 118 576-694 293-410 (1486)
79 KOG0933 Structural maintenance 97.5 0.077 1.7E-06 65.6 30.1 171 510-681 742-934 (1174)
80 KOG0994 Extracellular matrix g 97.5 0.13 2.7E-06 64.3 31.2 179 553-746 1568-1746(1758)
81 KOG0996 Structural maintenance 97.5 0.18 3.9E-06 63.4 32.8 42 577-618 392-433 (1293)
82 KOG0971 Microtubule-associated 97.5 0.5 1.1E-05 58.0 38.8 41 659-699 402-442 (1243)
83 PRK04778 septation ring format 97.5 0.1 2.3E-06 62.6 30.7 182 510-698 166-386 (569)
84 PHA02562 46 endonuclease subun 97.5 0.094 2E-06 62.3 30.2 6 310-315 41-46 (562)
85 PF05701 WEMBL: Weak chloropla 97.5 0.21 4.6E-06 59.5 32.9 82 581-662 279-360 (522)
86 TIGR02680 conserved hypothetic 97.5 0.14 2.9E-06 67.5 33.9 54 496-562 208-261 (1353)
87 KOG0612 Rho-associated, coiled 97.5 0.16 3.4E-06 64.1 31.8 30 82-111 55-84 (1317)
88 PF04849 HAP1_N: HAP1 N-termin 97.5 0.11 2.4E-06 57.5 27.5 145 591-746 161-305 (306)
89 COG1340 Uncharacterized archae 97.5 0.21 4.5E-06 55.0 29.3 100 599-698 133-238 (294)
90 KOG0976 Rho/Rac1-interacting s 97.4 0.3 6.4E-06 59.2 32.2 31 716-746 371-401 (1265)
91 COG5185 HEC1 Protein involved 97.4 0.14 3E-06 58.8 28.0 65 683-747 485-549 (622)
92 COG4942 Membrane-bound metallo 97.4 0.36 7.8E-06 55.6 31.6 52 657-708 193-244 (420)
93 PF14835 zf-RING_6: zf-RING of 97.4 1.9E-05 4.1E-10 67.3 -1.8 47 798-848 3-50 (65)
94 KOG4673 Transcription factor T 97.4 0.33 7.2E-06 58.0 31.5 95 648-743 539-635 (961)
95 PF05701 WEMBL: Weak chloropla 97.4 0.26 5.7E-06 58.7 31.8 17 510-526 173-189 (522)
96 COG1340 Uncharacterized archae 97.4 0.28 6E-06 54.0 29.0 110 574-684 136-245 (294)
97 KOG0311 Predicted E3 ubiquitin 97.4 2.7E-05 5.8E-10 85.5 -1.7 55 797-852 38-93 (381)
98 COG3883 Uncharacterized protei 97.3 0.21 4.6E-06 54.2 27.2 49 628-676 140-188 (265)
99 PRK01156 chromosome segregatio 97.3 0.59 1.3E-05 59.0 35.7 10 802-811 452-461 (895)
100 PF12718 Tropomyosin_1: Tropom 97.3 0.06 1.3E-06 53.6 21.2 110 577-697 22-131 (143)
101 PRK09039 hypothetical protein; 97.3 0.051 1.1E-06 61.4 23.3 54 552-605 50-103 (343)
102 KOG0977 Nuclear envelope prote 97.3 0.26 5.6E-06 58.5 29.3 63 585-647 94-156 (546)
103 KOG1853 LIS1-interacting prote 97.3 0.16 3.5E-06 54.3 24.8 58 590-647 52-109 (333)
104 PF08317 Spc7: Spc7 kinetochor 97.3 0.11 2.3E-06 58.3 25.3 129 553-698 133-261 (325)
105 COG4372 Uncharacterized protei 97.2 0.58 1.3E-05 52.8 31.3 25 721-745 256-280 (499)
106 KOG0964 Structural maintenance 97.2 0.31 6.8E-06 60.3 29.9 47 580-626 255-301 (1200)
107 PF00038 Filament: Intermediat 97.2 0.52 1.1E-05 52.0 35.5 41 577-617 97-137 (312)
108 KOG0976 Rho/Rac1-interacting s 97.2 0.24 5.3E-06 59.8 28.2 82 598-679 324-405 (1265)
109 PF10174 Cast: RIM-binding pro 97.2 0.66 1.4E-05 57.6 33.0 20 84-103 52-71 (775)
110 KOG0995 Centromere-associated 97.2 0.87 1.9E-05 53.9 32.3 106 641-746 434-539 (581)
111 PF06160 EzrA: Septation ring 97.2 0.26 5.7E-06 59.2 29.1 187 510-703 162-387 (560)
112 KOG0978 E3 ubiquitin ligase in 97.2 0.78 1.7E-05 55.9 32.6 133 577-709 476-608 (698)
113 TIGR01843 type_I_hlyD type I s 97.2 0.12 2.6E-06 58.7 25.3 32 585-616 139-170 (423)
114 PF12678 zf-rbx1: RING-H2 zinc 97.2 0.00032 7E-09 61.7 3.4 40 804-845 21-73 (73)
115 PF15619 Lebercilin: Ciliary p 97.2 0.43 9.2E-06 49.9 27.8 18 725-742 172-189 (194)
116 KOG4673 Transcription factor T 97.1 0.77 1.7E-05 55.0 31.0 23 725-747 740-762 (961)
117 KOG4692 Predicted E3 ubiquitin 97.1 0.00021 4.5E-09 78.3 2.2 48 801-850 421-468 (489)
118 PRK04778 septation ring format 97.1 0.53 1.2E-05 56.7 31.0 107 576-682 317-433 (569)
119 KOG0999 Microtubule-associated 97.1 0.66 1.4E-05 54.4 29.8 89 572-660 103-191 (772)
120 KOG0612 Rho-associated, coiled 97.1 0.53 1.2E-05 59.6 31.0 69 577-645 523-594 (1317)
121 PRK09039 hypothetical protein; 97.1 0.092 2E-06 59.3 22.9 10 848-857 332-341 (343)
122 KOG0963 Transcription factor/C 97.1 0.36 7.8E-06 57.5 27.8 180 505-684 141-341 (629)
123 COG5152 Uncharacterized conser 97.1 0.00021 4.5E-09 73.0 1.4 51 802-854 196-246 (259)
124 COG5243 HRD1 HRD ubiquitin lig 97.1 0.0003 6.5E-09 77.7 2.7 47 800-848 285-344 (491)
125 KOG0964 Structural maintenance 97.1 0.57 1.2E-05 58.1 29.9 71 576-646 300-370 (1200)
126 PF09730 BicD: Microtubule-ass 97.0 0.15 3.3E-06 62.3 25.0 99 563-661 21-119 (717)
127 KOG4677 Golgi integral membran 97.0 0.73 1.6E-05 52.9 28.2 30 479-508 149-184 (554)
128 PF05667 DUF812: Protein of un 97.0 0.34 7.3E-06 58.5 27.4 23 725-747 506-528 (594)
129 KOG0018 Structural maintenance 96.9 0.46 1E-05 59.5 28.3 25 528-552 649-673 (1141)
130 KOG0802 E3 ubiquitin ligase [P 96.9 0.00035 7.7E-09 83.0 1.9 47 800-848 289-340 (543)
131 PF05667 DUF812: Protein of un 96.9 0.14 3E-06 61.7 23.5 36 641-676 389-424 (594)
132 PF00038 Filament: Intermediat 96.9 1 2.2E-05 49.7 33.8 43 577-619 76-118 (312)
133 KOG0018 Structural maintenance 96.9 0.77 1.7E-05 57.6 29.3 114 575-688 219-352 (1141)
134 KOG0963 Transcription factor/C 96.9 0.88 1.9E-05 54.3 28.7 120 580-699 186-324 (629)
135 TIGR02680 conserved hypothetic 96.9 1.2 2.6E-05 59.0 33.3 7 346-352 65-71 (1353)
136 COG5540 RING-finger-containing 96.9 0.00063 1.4E-08 73.6 2.8 48 801-849 322-372 (374)
137 PRK01156 chromosome segregatio 96.8 1.3 2.8E-05 56.1 32.5 23 505-527 465-487 (895)
138 KOG4674 Uncharacterized conser 96.8 3 6.5E-05 55.6 35.4 105 505-612 1267-1382(1822)
139 KOG1813 Predicted E3 ubiquitin 96.8 0.00034 7.4E-09 75.5 0.3 50 803-854 242-291 (313)
140 KOG1003 Actin filament-coating 96.8 0.84 1.8E-05 47.5 26.4 147 511-678 6-162 (205)
141 PF15070 GOLGA2L5: Putative go 96.8 2.1 4.5E-05 52.2 31.8 109 635-747 198-309 (617)
142 KOG4643 Uncharacterized coiled 96.7 1.5 3.2E-05 54.9 29.9 93 588-680 465-557 (1195)
143 PRK11281 hypothetical protein; 96.7 1.1 2.4E-05 57.7 30.6 28 720-747 309-336 (1113)
144 PTZ00121 MAEBL; Provisional 96.7 2.2 4.8E-05 55.1 31.6 18 312-329 849-866 (2084)
145 PF14662 CCDC155: Coiled-coil 96.6 1.1 2.3E-05 46.7 27.4 18 726-743 174-191 (193)
146 PTZ00121 MAEBL; Provisional 96.6 3.4 7.3E-05 53.6 32.2 13 84-96 598-610 (2084)
147 PF08317 Spc7: Spc7 kinetochor 96.6 0.38 8.3E-06 53.9 22.6 11 526-536 137-147 (325)
148 KOG4674 Uncharacterized conser 96.6 5.1 0.00011 53.6 35.8 44 518-561 563-606 (1822)
149 smart00787 Spc7 Spc7 kinetocho 96.6 0.83 1.8E-05 51.1 24.8 117 569-702 144-260 (312)
150 KOG4159 Predicted E3 ubiquitin 96.6 0.0011 2.4E-08 75.6 2.2 50 799-850 81-130 (398)
151 TIGR01843 type_I_hlyD type I s 96.5 0.67 1.5E-05 52.7 24.5 17 728-744 250-266 (423)
152 KOG0249 LAR-interacting protei 96.5 0.27 5.9E-06 59.0 20.8 122 510-644 22-151 (916)
153 TIGR01005 eps_transp_fam exopo 96.3 0.52 1.1E-05 58.4 23.9 29 576-604 237-265 (754)
154 TIGR03185 DNA_S_dndD DNA sulfu 96.3 3.1 6.7E-05 51.0 30.1 7 459-465 135-141 (650)
155 PF12718 Tropomyosin_1: Tropom 96.3 0.99 2.1E-05 45.0 21.3 21 658-678 78-98 (143)
156 KOG1039 Predicted E3 ubiquitin 96.3 0.0021 4.6E-08 72.0 2.4 54 800-854 159-226 (344)
157 KOG2879 Predicted E3 ubiquitin 96.3 0.0026 5.6E-08 68.3 2.8 49 800-849 237-287 (298)
158 KOG2129 Uncharacterized conser 96.2 1.1 2.4E-05 51.0 23.1 83 511-593 138-225 (552)
159 KOG0999 Microtubule-associated 96.2 4 8.6E-05 48.3 27.9 26 577-602 51-76 (772)
160 KOG4628 Predicted E3 ubiquitin 96.2 0.0028 6E-08 70.9 2.6 47 803-850 230-279 (348)
161 COG0419 SbcC ATPase involved i 96.2 6.3 0.00014 50.3 35.8 52 637-688 380-431 (908)
162 PF13851 GAS: Growth-arrest sp 96.2 2.1 4.6E-05 45.0 23.6 100 509-614 27-131 (201)
163 PF15066 CAGE1: Cancer-associa 96.1 3.8 8.1E-05 47.6 27.7 80 577-656 384-463 (527)
164 PF15619 Lebercilin: Ciliary p 96.1 2.2 4.7E-05 44.7 24.4 18 510-527 6-23 (194)
165 KOG2660 Locus-specific chromos 96.0 0.0023 4.9E-08 70.4 1.1 57 796-854 9-66 (331)
166 PF10473 CENP-F_leu_zip: Leuci 96.0 1.6 3.6E-05 43.4 20.8 48 580-627 7-54 (140)
167 PF09755 DUF2046: Uncharacteri 96.0 3.4 7.3E-05 46.0 26.4 31 718-748 172-202 (310)
168 PF12861 zf-Apc11: Anaphase-pr 96.0 0.0066 1.4E-07 55.0 3.8 34 815-849 47-82 (85)
169 KOG1003 Actin filament-coating 96.0 2.4 5.2E-05 44.2 25.4 30 577-606 89-118 (205)
170 COG0419 SbcC ATPase involved i 96.0 7.4 0.00016 49.6 35.7 44 509-554 473-517 (908)
171 KOG0825 PHD Zn-finger protein 96.0 0.0019 4.2E-08 76.8 0.2 52 801-854 122-176 (1134)
172 PF10481 CENP-F_N: Cenp-F N-te 96.0 0.22 4.7E-06 53.9 15.3 124 501-624 3-136 (307)
173 PF06818 Fez1: Fez1; InterPro 95.9 2.1 4.6E-05 44.9 22.1 171 517-697 11-182 (202)
174 PF14447 Prok-RING_4: Prokaryo 95.9 0.0027 5.8E-08 52.8 0.8 45 802-850 7-51 (55)
175 KOG0982 Centrosomal protein Nu 95.9 2.2 4.8E-05 48.9 23.6 61 587-654 294-354 (502)
176 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 1.7 3.6E-05 42.6 20.3 104 588-698 8-111 (132)
177 PRK10246 exonuclease subunit S 95.9 6.1 0.00013 51.2 30.9 37 582-618 716-752 (1047)
178 PRK10246 exonuclease subunit S 95.8 9.5 0.00021 49.5 35.9 14 452-465 151-164 (1047)
179 KOG4643 Uncharacterized coiled 95.8 8.3 0.00018 48.6 31.6 125 574-698 413-554 (1195)
180 PF09789 DUF2353: Uncharacteri 95.8 1.3 2.9E-05 49.5 21.0 46 577-622 3-48 (319)
181 TIGR00634 recN DNA repair prot 95.7 2 4.3E-05 51.8 24.0 13 386-400 53-65 (563)
182 KOG0962 DNA repair protein RAD 95.7 6.6 0.00014 51.0 29.0 102 643-744 975-1082(1294)
183 PF13851 GAS: Growth-arrest sp 95.7 3.4 7.4E-05 43.4 23.2 47 610-656 33-79 (201)
184 PF09787 Golgin_A5: Golgin sub 95.7 6.9 0.00015 46.8 31.4 92 599-690 216-318 (511)
185 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.7 2.3 5.1E-05 41.6 20.2 75 585-659 12-86 (132)
186 PLN03188 kinesin-12 family pro 95.6 3.6 7.7E-05 53.1 26.0 51 521-572 1049-1100(1320)
187 PF13514 AAA_27: AAA domain 95.6 10 0.00022 49.6 31.4 61 501-562 143-209 (1111)
188 TIGR02977 phageshock_pspA phag 95.6 3.9 8.5E-05 43.4 23.7 106 577-682 32-142 (219)
189 KOG4807 F-actin binding protei 95.6 5.7 0.00012 45.2 27.8 33 714-746 509-541 (593)
190 PF09787 Golgin_A5: Golgin sub 95.6 2.5 5.5E-05 50.3 23.9 99 551-653 158-260 (511)
191 PF15397 DUF4618: Domain of un 95.5 4.7 0.0001 44.0 26.0 73 560-632 65-148 (258)
192 PF05276 SH3BP5: SH3 domain-bi 95.5 4.6 9.9E-05 43.7 27.8 120 578-697 79-214 (239)
193 PF04012 PspA_IM30: PspA/IM30 95.5 2.4 5.2E-05 44.7 21.0 99 577-677 31-129 (221)
194 COG5220 TFB3 Cdk activating ki 95.5 0.0063 1.4E-07 64.1 1.5 47 800-847 8-62 (314)
195 PRK11281 hypothetical protein; 95.4 11 0.00024 49.1 30.2 55 578-632 123-177 (1113)
196 PF05483 SCP-1: Synaptonemal c 95.4 9.3 0.0002 46.5 32.8 142 541-682 134-276 (786)
197 KOG2991 Splicing regulator [RN 95.4 5 0.00011 43.4 27.8 127 518-647 75-232 (330)
198 PF00769 ERM: Ezrin/radixin/mo 95.4 1.3 2.8E-05 48.0 18.9 23 725-747 183-205 (246)
199 PF10481 CENP-F_N: Cenp-F N-te 95.3 2 4.4E-05 46.7 19.7 123 525-678 5-127 (307)
200 PF06160 EzrA: Septation ring 95.3 9.3 0.0002 46.2 29.0 81 599-679 346-426 (560)
201 PRK10929 putative mechanosensi 95.3 14 0.0003 48.1 30.6 29 719-747 288-316 (1109)
202 PF10168 Nup88: Nuclear pore c 95.3 2 4.4E-05 53.2 22.5 59 581-646 563-621 (717)
203 TIGR00618 sbcc exonuclease Sbc 95.3 7.4 0.00016 50.4 28.6 16 798-813 497-512 (1042)
204 PF05483 SCP-1: Synaptonemal c 95.3 9.9 0.00021 46.3 32.7 144 532-676 400-543 (786)
205 PF05911 DUF869: Plant protein 95.3 4.7 0.0001 50.2 25.3 43 579-621 606-648 (769)
206 PF11559 ADIP: Afadin- and alp 95.3 2.1 4.6E-05 42.5 18.8 62 637-698 50-111 (151)
207 PRK10929 putative mechanosensi 95.2 14 0.0003 48.1 30.1 25 578-602 104-128 (1109)
208 KOG1002 Nucleotide excision re 95.2 0.0089 1.9E-07 68.8 1.9 49 799-848 533-585 (791)
209 PF10146 zf-C4H2: Zinc finger- 95.2 2.1 4.5E-05 46.0 19.4 23 825-848 196-218 (230)
210 KOG0297 TNF receptor-associate 95.2 0.0085 1.8E-07 68.7 1.6 52 799-852 18-70 (391)
211 smart00787 Spc7 Spc7 kinetocho 95.2 4.3 9.3E-05 45.5 22.7 36 641-676 227-262 (312)
212 TIGR01005 eps_transp_fam exopo 95.1 8.1 0.00017 48.1 27.4 31 583-613 237-267 (754)
213 KOG4809 Rab6 GTPase-interactin 95.1 10 0.00022 45.1 26.0 111 535-645 346-469 (654)
214 PF09728 Taxilin: Myosin-like 95.0 7.6 0.00016 43.5 35.0 89 543-631 62-162 (309)
215 PF05010 TACC: Transforming ac 95.0 5.8 0.00013 42.0 28.8 111 627-744 71-181 (207)
216 KOG4367 Predicted Zn-finger pr 95.0 0.015 3.3E-07 65.5 2.9 35 800-835 2-36 (699)
217 PF14570 zf-RING_4: RING/Ubox 95.0 0.016 3.5E-07 47.1 2.3 43 805-848 1-47 (48)
218 PRK10698 phage shock protein P 95.0 3.5 7.6E-05 44.0 20.4 38 578-615 33-70 (222)
219 COG5236 Uncharacterized conser 95.0 0.02 4.4E-07 63.1 3.7 52 797-849 56-108 (493)
220 TIGR02977 phageshock_pspA phag 94.9 6.2 0.00014 41.8 22.5 86 536-621 50-137 (219)
221 PF04111 APG6: Autophagy prote 94.9 0.54 1.2E-05 52.6 14.7 22 725-746 114-135 (314)
222 KOG4572 Predicted DNA-binding 94.9 8.5 0.00018 47.4 24.7 42 646-687 995-1036(1424)
223 KOG0163 Myosin class VI heavy 94.9 11 0.00024 46.2 25.6 21 811-832 1074-1094(1259)
224 KOG0828 Predicted E3 ubiquitin 94.9 0.014 3.1E-07 66.9 2.2 50 799-849 568-634 (636)
225 KOG4403 Cell surface glycoprot 94.8 4.3 9.4E-05 46.7 21.1 29 534-562 238-266 (575)
226 TIGR03007 pepcterm_ChnLen poly 94.8 6.3 0.00014 46.5 23.9 27 577-603 205-231 (498)
227 PRK10698 phage shock protein P 94.8 7 0.00015 41.7 24.4 105 510-618 28-134 (222)
228 PF12325 TMF_TATA_bd: TATA ele 94.8 1.7 3.7E-05 42.2 15.7 87 592-682 18-104 (120)
229 PF15066 CAGE1: Cancer-associa 94.7 11 0.00024 43.9 27.8 69 599-667 364-432 (527)
230 PF04849 HAP1_N: HAP1 N-termin 94.7 2.5 5.4E-05 47.1 18.8 13 549-561 175-187 (306)
231 PF04111 APG6: Autophagy prote 94.7 0.67 1.5E-05 51.9 14.8 39 625-663 50-88 (314)
232 PF10473 CENP-F_leu_zip: Leuci 94.6 5.3 0.00012 39.8 20.8 33 577-609 32-64 (140)
233 PF09789 DUF2353: Uncharacteri 94.6 4.8 0.0001 45.2 20.9 123 505-627 26-177 (319)
234 PF10186 Atg14: UV radiation r 94.6 5.5 0.00012 43.2 21.4 20 543-562 22-41 (302)
235 PF11789 zf-Nse: Zinc-finger o 94.6 0.025 5.4E-07 47.7 2.5 46 797-843 6-53 (57)
236 KOG0249 LAR-interacting protei 94.6 7.9 0.00017 47.2 23.5 82 505-596 101-183 (916)
237 COG5185 HEC1 Protein involved 94.5 13 0.00027 43.6 27.5 17 357-376 106-122 (622)
238 COG1842 PspA Phage shock prote 94.5 8.2 0.00018 41.4 22.8 105 575-681 30-134 (225)
239 PF07111 HCR: Alpha helical co 94.4 17 0.00037 44.5 26.8 47 633-682 572-618 (739)
240 PF00769 ERM: Ezrin/radixin/mo 94.3 3.1 6.6E-05 45.1 18.4 38 577-614 13-50 (246)
241 PRK00106 hypothetical protein; 94.3 16 0.00035 44.0 27.9 19 805-823 257-275 (535)
242 TIGR03007 pepcterm_ChnLen poly 94.2 15 0.00032 43.3 26.7 31 581-611 202-232 (498)
243 TIGR01000 bacteriocin_acc bact 94.1 11 0.00024 44.2 23.9 21 725-745 292-312 (457)
244 KOG1001 Helicase-like transcri 93.9 0.025 5.5E-07 68.8 1.7 45 803-849 455-500 (674)
245 PF09730 BicD: Microtubule-ass 93.9 11 0.00024 46.6 23.8 93 583-679 55-147 (717)
246 PF10168 Nup88: Nuclear pore c 93.9 8.8 0.00019 47.8 23.2 130 546-678 534-664 (717)
247 COG5222 Uncharacterized conser 93.9 0.031 6.8E-07 60.6 2.1 43 803-846 275-318 (427)
248 PF05276 SH3BP5: SH3 domain-bi 93.8 12 0.00025 40.6 26.8 100 592-698 123-222 (239)
249 PF04012 PspA_IM30: PspA/IM30 93.8 10 0.00022 39.9 24.1 8 737-744 195-202 (221)
250 PF10234 Cluap1: Clusterin-ass 93.7 8.4 0.00018 42.3 20.1 85 537-621 130-214 (267)
251 COG4717 Uncharacterized conser 93.6 26 0.00056 44.0 29.4 24 505-528 567-590 (984)
252 PF05622 HOOK: HOOK protein; 93.6 0.02 4.3E-07 70.5 0.0 187 509-703 325-524 (713)
253 KOG0962 DNA repair protein RAD 93.6 33 0.0007 45.1 31.1 14 733-746 1064-1077(1294)
254 PF05010 TACC: Transforming ac 93.6 12 0.00025 39.8 29.3 20 596-615 68-87 (207)
255 PF13514 AAA_27: AAA domain 93.5 33 0.00071 44.9 32.4 25 505-529 683-707 (1111)
256 PRK12704 phosphodiesterase; Pr 93.5 14 0.00031 44.3 23.4 70 575-644 81-150 (520)
257 KOG1937 Uncharacterized conser 93.5 19 0.00042 42.0 24.4 26 721-746 400-425 (521)
258 PF04641 Rtf2: Rtf2 RING-finge 93.5 0.075 1.6E-06 57.7 4.1 50 799-851 110-163 (260)
259 PF15254 CCDC14: Coiled-coil d 93.4 26 0.00056 43.4 25.6 36 505-540 330-365 (861)
260 PF01576 Myosin_tail_1: Myosin 93.4 0.022 4.8E-07 71.4 0.0 110 577-686 188-311 (859)
261 TIGR03319 YmdA_YtgF conserved 93.3 23 0.0005 42.5 26.3 18 806-823 237-254 (514)
262 PRK12704 phosphodiesterase; Pr 93.3 23 0.0005 42.5 25.9 17 807-823 244-260 (520)
263 KOG1814 Predicted E3 ubiquitin 93.3 0.049 1.1E-06 61.7 2.5 33 802-835 184-219 (445)
264 PF09755 DUF2046: Uncharacteri 93.3 17 0.00036 40.7 32.5 20 642-661 159-178 (310)
265 PRK10869 recombination and rep 93.3 24 0.00053 42.6 25.9 14 385-400 52-65 (553)
266 TIGR03319 YmdA_YtgF conserved 93.2 19 0.00041 43.2 23.9 68 577-644 77-144 (514)
267 COG2433 Uncharacterized conser 93.2 1.6 3.5E-05 52.1 14.6 37 174-210 37-73 (652)
268 PF06785 UPF0242: Uncharacteri 93.2 18 0.00039 40.7 22.1 79 548-626 82-163 (401)
269 KOG4809 Rab6 GTPase-interactin 93.0 15 0.00033 43.6 21.7 20 550-569 423-442 (654)
270 TIGR03017 EpsF chain length de 93.0 20 0.00042 41.6 23.4 18 641-658 284-301 (444)
271 KOG3039 Uncharacterized conser 93.0 0.95 2.1E-05 48.5 11.2 49 801-851 220-272 (303)
272 PF01576 Myosin_tail_1: Myosin 93.0 0.028 6E-07 70.6 0.0 22 509-530 285-306 (859)
273 PF11559 ADIP: Afadin- and alp 93.0 8.6 0.00019 38.2 17.7 33 581-613 57-89 (151)
274 PF05911 DUF869: Plant protein 92.9 32 0.0007 43.2 30.1 49 543-598 19-67 (769)
275 TIGR00634 recN DNA repair prot 92.9 27 0.00059 42.2 26.9 12 551-562 192-203 (563)
276 KOG1103 Predicted coiled-coil 92.7 21 0.00045 40.3 23.6 39 581-619 144-182 (561)
277 KOG0946 ER-Golgi vesicle-tethe 92.7 34 0.00074 42.7 26.5 19 107-125 288-306 (970)
278 PF06785 UPF0242: Uncharacteri 92.5 16 0.00034 41.2 19.9 8 520-527 60-67 (401)
279 COG3883 Uncharacterized protei 92.5 20 0.00042 39.5 27.8 23 505-527 34-56 (265)
280 KOG0946 ER-Golgi vesicle-tethe 92.3 33 0.00071 42.8 23.9 36 579-614 660-695 (970)
281 KOG2129 Uncharacterized conser 92.2 27 0.00058 40.4 25.1 35 548-582 136-171 (552)
282 KOG1899 LAR transmembrane tyro 92.1 13 0.00028 44.8 19.8 66 580-645 150-215 (861)
283 PF09728 Taxilin: Myosin-like 92.1 24 0.00052 39.6 32.1 51 626-676 203-253 (309)
284 KOG3800 Predicted E3 ubiquitin 92.0 0.12 2.6E-06 56.3 3.1 29 819-848 22-50 (300)
285 TIGR00618 sbcc exonuclease Sbc 91.9 50 0.0011 43.0 36.9 38 428-465 120-160 (1042)
286 PF13870 DUF4201: Domain of un 91.9 16 0.00035 37.3 20.9 69 594-662 46-114 (177)
287 PF14915 CCDC144C: CCDC144C pr 91.9 24 0.00053 39.2 31.1 82 545-626 28-113 (305)
288 COG1842 PspA Phage shock prote 91.8 16 0.00035 39.2 18.9 43 651-693 97-139 (225)
289 KOG0982 Centrosomal protein Nu 91.8 30 0.00066 40.2 29.0 45 577-621 305-349 (502)
290 PF12795 MscS_porin: Mechanose 91.8 21 0.00046 38.3 27.7 59 577-635 79-137 (240)
291 PLN03188 kinesin-12 family pro 91.8 54 0.0012 43.0 31.6 13 115-127 383-395 (1320)
292 KOG3002 Zn finger protein [Gen 91.7 0.093 2E-06 58.2 2.1 46 799-850 45-92 (299)
293 PF05262 Borrelia_P83: Borreli 91.7 18 0.00039 43.0 20.7 26 798-823 387-417 (489)
294 PF07800 DUF1644: Protein of u 91.7 0.12 2.5E-06 52.0 2.5 54 802-855 2-97 (162)
295 KOG0804 Cytoplasmic Zn-finger 91.6 10 0.00023 44.0 17.9 19 728-746 432-450 (493)
296 KOG0243 Kinesin-like protein [ 91.6 52 0.0011 42.4 28.0 22 506-527 401-422 (1041)
297 TIGR03017 EpsF chain length de 91.5 32 0.00069 39.9 28.2 11 578-588 217-227 (444)
298 PF15070 GOLGA2L5: Putative go 91.5 42 0.00092 41.2 33.5 33 651-683 186-218 (617)
299 PF07058 Myosin_HC-like: Myosi 91.5 11 0.00023 42.0 17.0 131 511-663 2-132 (351)
300 KOG4593 Mitotic checkpoint pro 91.4 43 0.00094 41.1 35.7 21 727-747 295-315 (716)
301 PRK00106 hypothetical protein; 91.4 40 0.00087 40.7 26.1 68 577-644 98-165 (535)
302 PLN02939 transferase, transfer 91.4 54 0.0012 42.2 28.6 28 721-748 373-400 (977)
303 KOG2991 Splicing regulator [RN 91.3 25 0.00055 38.2 22.8 17 648-664 280-296 (330)
304 PF14662 CCDC155: Coiled-coil 91.2 22 0.00047 37.3 26.6 11 513-523 5-15 (193)
305 PF12325 TMF_TATA_bd: TATA ele 91.2 13 0.00027 36.3 15.7 91 578-679 18-108 (120)
306 PF05557 MAD: Mitotic checkpoi 91.1 0.19 4.1E-06 62.1 4.1 109 508-616 304-418 (722)
307 KOG1937 Uncharacterized conser 91.1 36 0.00079 39.8 29.1 80 576-663 345-427 (521)
308 KOG2114 Vacuolar assembly/sort 91.0 0.62 1.4E-05 57.2 8.0 41 803-848 841-882 (933)
309 KOG0243 Kinesin-like protein [ 91.0 59 0.0013 41.9 30.5 17 103-119 110-129 (1041)
310 COG0497 RecN ATPase involved i 90.9 44 0.00096 40.4 25.6 26 366-401 41-66 (557)
311 PF06548 Kinesin-related: Kine 90.7 40 0.00086 39.5 27.1 36 519-555 277-312 (488)
312 PF07111 HCR: Alpha helical co 90.7 50 0.0011 40.7 30.0 27 505-531 62-88 (739)
313 KOG4593 Mitotic checkpoint pro 90.7 50 0.0011 40.7 31.9 76 599-674 146-221 (716)
314 COG4477 EzrA Negative regulato 90.7 44 0.00095 40.0 29.9 111 577-689 256-376 (570)
315 KOG0288 WD40 repeat protein Ti 90.6 13 0.00028 42.9 17.3 71 577-647 7-77 (459)
316 PF13870 DUF4201: Domain of un 90.6 22 0.00048 36.3 22.1 72 608-679 46-117 (177)
317 KOG1853 LIS1-interacting prote 90.6 29 0.00063 37.7 21.2 29 722-750 162-190 (333)
318 PF13166 AAA_13: AAA domain 90.5 53 0.0011 40.5 27.6 11 821-831 568-578 (712)
319 PF05290 Baculo_IE-1: Baculovi 90.3 0.24 5.1E-06 48.5 3.1 50 801-851 79-134 (140)
320 PRK10361 DNA recombination pro 90.3 46 0.001 39.6 30.6 57 577-633 54-110 (475)
321 PF12777 MT: Microtubule-bindi 90.0 39 0.00084 38.3 24.8 25 578-602 77-101 (344)
322 KOG0239 Kinesin (KAR3 subfamil 89.8 36 0.00077 42.2 21.6 54 643-696 224-277 (670)
323 KOG2751 Beclin-like protein [S 89.8 16 0.00034 42.5 17.2 86 577-671 144-229 (447)
324 PF10212 TTKRSYEDQ: Predicted 89.6 27 0.00059 41.6 19.5 67 600-673 416-482 (518)
325 COG2433 Uncharacterized conser 89.6 21 0.00045 43.2 18.6 46 635-680 418-463 (652)
326 PRK10884 SH3 domain-containing 89.6 5.8 0.00013 42.0 13.0 9 402-410 34-42 (206)
327 PF14992 TMCO5: TMCO5 family 89.5 11 0.00024 41.6 15.4 33 579-611 14-46 (280)
328 PF10498 IFT57: Intra-flagella 89.5 29 0.00062 39.9 19.3 40 620-659 275-314 (359)
329 TIGR01000 bacteriocin_acc bact 89.5 50 0.0011 38.8 26.3 26 721-746 295-320 (457)
330 KOG2891 Surface glycoprotein [ 89.4 28 0.00061 38.2 17.9 9 143-151 91-99 (445)
331 PF09731 Mitofilin: Mitochondr 89.4 58 0.0013 39.4 25.7 40 505-544 247-286 (582)
332 KOG2113 Predicted RNA binding 89.3 0.26 5.7E-06 54.1 2.8 55 797-854 338-392 (394)
333 KOG4722 Zn-finger protein [Gen 89.3 48 0.001 38.4 25.3 37 518-564 256-292 (672)
334 PF06705 SF-assemblin: SF-asse 89.2 35 0.00077 36.8 33.0 20 508-527 4-23 (247)
335 COG5175 MOT2 Transcriptional r 89.1 0.32 7E-06 53.9 3.4 47 803-850 15-65 (480)
336 KOG4185 Predicted E3 ubiquitin 89.1 0.23 4.9E-06 54.6 2.2 45 803-848 4-54 (296)
337 PF05622 HOOK: HOOK protein; 89.1 0.12 2.5E-06 63.8 0.0 26 665-690 361-386 (713)
338 PF03962 Mnd1: Mnd1 family; I 89.0 8 0.00017 40.3 13.3 81 591-679 70-154 (188)
339 KOG0804 Cytoplasmic Zn-finger 88.8 26 0.00056 41.0 18.1 9 448-456 285-293 (493)
340 KOG4360 Uncharacterized coiled 88.8 21 0.00046 42.2 17.6 73 579-651 215-287 (596)
341 PF11570 E2R135: Coiled-coil r 88.7 14 0.00031 36.2 13.6 103 574-676 6-114 (136)
342 PF02845 CUE: CUE domain; Int 88.3 0.53 1.1E-05 36.9 3.2 34 178-211 3-36 (42)
343 PF08614 ATG16: Autophagy prot 88.2 9.6 0.00021 39.7 13.4 19 532-550 18-36 (194)
344 smart00546 CUE Domain that may 88.1 0.55 1.2E-05 37.0 3.2 35 177-211 3-37 (43)
345 KOG0163 Myosin class VI heavy 87.8 29 0.00063 42.8 18.3 20 171-190 428-447 (1259)
346 PF05266 DUF724: Protein of un 87.8 18 0.0004 37.8 15.1 45 577-621 139-183 (190)
347 PF13863 DUF4200: Domain of un 87.7 26 0.00057 33.4 15.9 97 646-746 7-103 (126)
348 PF10498 IFT57: Intra-flagella 87.7 24 0.00051 40.5 17.1 22 725-746 329-350 (359)
349 KOG4364 Chromatin assembly fac 87.5 36 0.00077 41.6 18.6 10 825-834 486-495 (811)
350 KOG1645 RING-finger-containing 87.5 0.32 6.9E-06 55.2 2.1 46 802-848 4-55 (463)
351 KOG4787 Uncharacterized conser 87.5 58 0.0012 39.3 20.0 50 636-685 434-484 (852)
352 PF10146 zf-C4H2: Zinc finger- 87.4 26 0.00057 37.8 16.3 10 802-811 194-203 (230)
353 COG4913 Uncharacterized protei 87.3 71 0.0015 39.6 21.0 112 582-698 615-729 (1104)
354 KOG2113 Predicted RNA binding 87.3 0.14 3E-06 56.2 -0.8 56 799-854 133-188 (394)
355 PF06008 Laminin_I: Laminin Do 87.2 49 0.0011 36.0 30.8 32 651-682 183-214 (264)
356 PF05384 DegS: Sensor protein 87.2 38 0.00082 34.6 22.9 47 557-603 8-54 (159)
357 PF09304 Cortex-I_coil: Cortex 87.1 28 0.00062 33.2 15.9 54 648-701 18-71 (107)
358 PRK10884 SH3 domain-containing 87.1 5.5 0.00012 42.1 10.9 36 491-527 69-104 (206)
359 smart00502 BBC B-Box C-termina 86.9 26 0.00057 32.6 15.7 65 581-645 5-70 (127)
360 PF15035 Rootletin: Ciliary ro 86.8 43 0.00093 34.9 19.0 89 647-735 89-177 (182)
361 PF15556 Zwint: ZW10 interacto 86.7 46 0.001 35.2 18.1 53 607-659 55-111 (252)
362 PF10272 Tmpp129: Putative tra 86.7 0.69 1.5E-05 52.5 4.2 26 825-850 315-352 (358)
363 PF10212 TTKRSYEDQ: Predicted 86.6 81 0.0017 37.8 25.5 33 714-746 470-502 (518)
364 PF08614 ATG16: Autophagy prot 86.5 14 0.0003 38.5 13.4 39 645-683 143-181 (194)
365 KOG4360 Uncharacterized coiled 86.5 49 0.0011 39.4 18.6 22 582-603 204-225 (596)
366 KOG0240 Kinesin (SMY1 subfamil 86.5 85 0.0018 38.0 23.6 27 105-131 66-95 (607)
367 PF15290 Syntaphilin: Golgi-lo 86.3 32 0.0007 38.0 16.1 59 600-665 85-143 (305)
368 PF08647 BRE1: BRE1 E3 ubiquit 86.2 21 0.00045 33.2 13.0 10 579-588 27-36 (96)
369 PF07106 TBPIP: Tat binding pr 86.0 11 0.00023 38.4 12.0 38 577-614 73-110 (169)
370 TIGR01010 BexC_CtrB_KpsE polys 85.8 46 0.001 37.7 18.3 23 581-603 175-197 (362)
371 PF07889 DUF1664: Protein of u 85.6 10 0.00022 37.3 11.0 58 553-610 66-123 (126)
372 KOG0826 Predicted E3 ubiquitin 85.6 0.51 1.1E-05 52.4 2.4 54 800-855 298-354 (357)
373 TIGR03185 DNA_S_dndD DNA sulfu 85.5 1E+02 0.0022 38.0 31.1 13 820-832 603-615 (650)
374 PF11180 DUF2968: Protein of u 85.5 50 0.0011 34.7 16.5 37 643-679 109-145 (192)
375 PF12795 MscS_porin: Mechanose 85.5 56 0.0012 35.0 23.3 58 628-685 81-138 (240)
376 KOG2008 BTK-associated SH3-dom 85.4 69 0.0015 36.0 23.2 43 718-761 184-226 (426)
377 PF05278 PEARLI-4: Arabidopsis 85.4 49 0.0011 36.5 17.2 11 509-519 129-139 (269)
378 COG4717 Uncharacterized conser 85.3 1.2E+02 0.0025 38.6 30.7 44 572-615 616-659 (984)
379 KOG1103 Predicted coiled-coil 85.2 74 0.0016 36.1 19.6 122 577-698 147-276 (561)
380 PF11180 DUF2968: Protein of u 85.1 44 0.00096 35.0 15.8 47 623-669 138-184 (192)
381 KOG3161 Predicted E3 ubiquitin 84.9 0.41 8.9E-06 56.9 1.3 38 801-842 10-51 (861)
382 PRK00409 recombination and DNA 84.9 27 0.00058 44.1 17.1 22 169-190 244-265 (782)
383 cd00632 Prefoldin_beta Prefold 84.8 12 0.00026 35.1 10.9 38 582-619 62-99 (105)
384 PF15254 CCDC14: Coiled-coil d 84.8 1.2E+02 0.0025 38.1 26.7 31 591-622 382-412 (861)
385 PF05557 MAD: Mitotic checkpoi 84.8 0.29 6.2E-06 60.6 0.0 23 646-668 185-207 (722)
386 PRK10361 DNA recombination pro 84.7 95 0.0021 37.0 27.3 27 582-608 66-92 (475)
387 KOG4362 Transcriptional regula 84.7 0.22 4.7E-06 60.2 -1.0 53 796-849 15-69 (684)
388 TIGR01069 mutS2 MutS2 family p 84.6 26 0.00056 44.2 16.8 19 170-188 240-258 (771)
389 PRK10869 recombination and rep 84.6 1E+02 0.0022 37.4 26.1 10 553-562 190-199 (553)
390 KOG1899 LAR transmembrane tyro 84.6 92 0.002 38.0 19.9 40 643-682 221-260 (861)
391 TIGR01010 BexC_CtrB_KpsE polys 84.5 78 0.0017 35.9 21.0 22 641-662 244-265 (362)
392 PF05883 Baculo_RING: Baculovi 84.1 1.1 2.4E-05 44.1 3.7 50 801-857 25-83 (134)
393 TIGR00998 8a0101 efflux pump m 83.8 49 0.0011 36.6 17.1 20 599-618 103-122 (334)
394 PF05335 DUF745: Protein of un 83.6 62 0.0013 34.0 20.3 21 669-689 146-166 (188)
395 KOG0827 Predicted E3 ubiquitin 83.6 0.83 1.8E-05 51.7 2.9 47 802-849 4-56 (465)
396 KOG3799 Rab3 effector RIM1 and 83.5 3.7 8E-05 40.4 6.9 27 799-831 62-89 (169)
397 PF09744 Jnk-SapK_ap_N: JNK_SA 83.4 56 0.0012 33.3 17.1 39 545-583 47-85 (158)
398 COG4477 EzrA Negative regulato 83.2 1.1E+02 0.0024 36.7 28.0 108 543-650 318-428 (570)
399 KOG2034 Vacuolar sorting prote 83.1 1.7 3.6E-05 53.9 5.5 37 797-834 812-850 (911)
400 PF02841 GBP_C: Guanylate-bind 83.0 82 0.0018 34.9 27.7 19 726-744 279-297 (297)
401 KOG4403 Cell surface glycoprot 82.9 97 0.0021 36.2 18.6 25 663-687 400-424 (575)
402 KOG3842 Adaptor protein Pellin 82.8 1.1 2.5E-05 49.3 3.5 55 800-856 339-424 (429)
403 PTZ00491 major vault protein; 82.7 1.2E+02 0.0025 38.6 20.7 65 558-622 681-745 (850)
404 KOG2932 E3 ubiquitin ligase in 82.7 0.39 8.4E-06 52.8 -0.0 44 803-850 91-135 (389)
405 KOG0244 Kinesin-like protein [ 82.6 1.5E+02 0.0033 37.8 21.7 21 598-618 517-537 (913)
406 PRK10476 multidrug resistance 82.4 60 0.0013 36.5 17.3 12 731-742 197-208 (346)
407 PF05103 DivIVA: DivIVA protei 82.4 0.62 1.3E-05 44.8 1.2 52 642-693 28-79 (131)
408 TIGR00998 8a0101 efflux pump m 82.2 69 0.0015 35.4 17.5 10 732-741 194-203 (334)
409 KOG1734 Predicted RING-contain 82.1 0.57 1.2E-05 50.7 1.0 49 800-849 222-281 (328)
410 PF10367 Vps39_2: Vacuolar sor 82.1 2.9 6.2E-05 38.5 5.5 32 799-831 75-108 (109)
411 PF08647 BRE1: BRE1 E3 ubiquit 82.1 43 0.00094 31.1 13.4 50 577-626 4-53 (96)
412 PRK09841 cryptic autophosphory 82.1 55 0.0012 40.9 18.2 24 581-604 272-295 (726)
413 KOG2196 Nuclear porin [Nuclear 82.1 82 0.0018 34.3 19.8 150 591-747 100-249 (254)
414 smart00744 RINGv The RING-vari 82.0 1.7 3.8E-05 35.5 3.5 41 804-845 1-49 (49)
415 KOG3850 Predicted membrane pro 82.0 1.1E+02 0.0023 35.5 18.6 64 607-670 277-341 (455)
416 PF12777 MT: Microtubule-bindi 81.9 26 0.00056 39.8 14.1 41 636-676 5-45 (344)
417 KOG2264 Exostosin EXT1L [Signa 81.9 12 0.00025 44.7 11.2 43 641-683 95-137 (907)
418 KOG4445 Uncharacterized conser 81.7 0.54 1.2E-05 51.6 0.6 48 801-849 114-186 (368)
419 PF14197 Cep57_CLD_2: Centroso 81.7 16 0.00034 32.3 9.5 25 602-626 3-27 (69)
420 PTZ00266 NIMA-related protein 81.4 23 0.00049 45.9 14.6 17 168-185 120-136 (1021)
421 KOG4807 F-actin binding protei 81.3 1.1E+02 0.0024 35.3 26.8 50 94-143 38-95 (593)
422 PF06637 PV-1: PV-1 protein (P 81.3 81 0.0018 36.3 17.1 110 586-695 281-391 (442)
423 KOG4364 Chromatin assembly fac 81.2 76 0.0017 38.9 17.7 12 840-851 486-497 (811)
424 PF14073 Cep57_CLD: Centrosome 81.2 73 0.0016 33.2 21.4 34 585-618 59-92 (178)
425 PRK03598 putative efflux pump 81.0 49 0.0011 36.9 15.8 15 659-673 151-165 (331)
426 PTZ00266 NIMA-related protein 80.9 28 0.00062 45.0 15.2 7 279-285 224-230 (1021)
427 KOG2817 Predicted E3 ubiquitin 80.8 1.1 2.4E-05 51.0 2.6 56 800-856 332-394 (394)
428 PF15397 DUF4618: Domain of un 80.7 95 0.0021 34.2 30.3 21 726-746 195-215 (258)
429 PLN03229 acetyl-coenzyme A car 80.6 1.6E+02 0.0036 36.8 22.2 24 132-155 62-86 (762)
430 PF03915 AIP3: Actin interacti 80.5 1.3E+02 0.0028 35.5 19.2 19 546-564 149-167 (424)
431 CHL00019 atpF ATP synthase CF0 80.1 77 0.0017 32.7 15.9 31 632-662 55-85 (184)
432 PRK11519 tyrosine kinase; Prov 79.9 60 0.0013 40.6 17.5 27 579-605 270-296 (719)
433 PF04710 Pellino: Pellino; In 79.9 0.56 1.2E-05 53.3 0.0 55 801-857 327-412 (416)
434 TIGR02473 flagell_FliJ flagell 79.7 60 0.0013 31.3 18.8 33 641-673 63-95 (141)
435 PLN03229 acetyl-coenzyme A car 79.5 1.7E+02 0.0037 36.7 20.3 13 94-106 131-143 (762)
436 COG3064 TolA Membrane protein 79.4 76 0.0016 35.7 15.8 30 802-831 325-358 (387)
437 PHA03096 p28-like protein; Pro 79.2 1.2 2.7E-05 49.1 2.4 43 803-846 179-231 (284)
438 PF05278 PEARLI-4: Arabidopsis 79.1 69 0.0015 35.4 15.4 32 505-538 145-177 (269)
439 KOG4657 Uncharacterized conser 78.9 1E+02 0.0022 33.3 18.1 39 577-615 66-104 (246)
440 PRK06231 F0F1 ATP synthase sub 78.9 88 0.0019 33.1 15.9 31 632-662 79-109 (205)
441 PF13863 DUF4200: Domain of un 78.9 62 0.0013 30.9 16.6 41 636-676 64-104 (126)
442 COG1566 EmrA Multidrug resista 78.8 57 0.0012 37.4 15.4 40 580-619 88-127 (352)
443 PF02050 FliJ: Flagellar FliJ 78.5 54 0.0012 30.0 16.9 29 641-669 47-75 (123)
444 PRK03947 prefoldin subunit alp 78.4 68 0.0015 31.4 14.1 24 648-671 103-126 (140)
445 PF15290 Syntaphilin: Golgi-lo 78.3 66 0.0014 35.6 14.8 41 647-687 69-109 (305)
446 PF10234 Cluap1: Clusterin-ass 77.8 1.2E+02 0.0026 33.6 19.0 74 629-702 159-232 (267)
447 PRK15422 septal ring assembly 77.8 28 0.00061 31.5 9.8 57 640-696 12-68 (79)
448 KOG3579 Predicted E3 ubiquitin 77.7 0.88 1.9E-05 49.6 0.6 29 803-832 269-301 (352)
449 KOG0288 WD40 repeat protein Ti 77.6 1.3E+02 0.0028 35.1 17.4 14 590-603 13-26 (459)
450 COG3074 Uncharacterized protei 77.4 37 0.0008 30.1 10.1 50 640-689 12-61 (79)
451 KOG1428 Inhibitor of type V ad 77.4 1.3 2.9E-05 56.7 2.1 51 800-851 3484-3546(3738)
452 KOG0742 AAA+-type ATPase [Post 77.1 1.6E+02 0.0035 34.7 20.8 17 717-733 244-260 (630)
453 KOG2751 Beclin-like protein [S 77.0 1.2E+02 0.0026 35.6 17.1 64 606-669 178-241 (447)
454 PF02050 FliJ: Flagellar FliJ 76.8 60 0.0013 29.7 17.5 29 646-674 59-87 (123)
455 KOG1265 Phospholipase C [Lipid 76.6 2E+02 0.0043 36.8 19.6 149 554-723 1037-1187(1189)
456 TIGR02231 conserved hypothetic 76.6 26 0.00055 42.0 12.5 9 591-599 93-101 (525)
457 KOG0681 Actin-related protein 76.4 90 0.002 37.6 16.2 18 496-515 235-252 (645)
458 PRK14474 F0F1 ATP synthase sub 76.4 1E+02 0.0022 33.6 15.9 96 648-743 31-128 (250)
459 PF10267 Tmemb_cc2: Predicted 76.3 98 0.0021 36.1 16.4 18 651-668 274-291 (395)
460 PF02841 GBP_C: Guanylate-bind 76.2 1.3E+02 0.0029 33.3 23.9 34 505-538 92-125 (297)
461 TIGR01069 mutS2 MutS2 family p 75.7 82 0.0018 39.8 17.0 6 428-433 439-444 (771)
462 COG5219 Uncharacterized conser 75.7 1.3 2.9E-05 54.8 1.5 50 800-850 1467-1524(1525)
463 PF08172 CASP_C: CASP C termin 75.3 19 0.0004 39.3 9.9 35 578-612 1-35 (248)
464 KOG1493 Anaphase-promoting com 75.3 1.4 3E-05 39.4 1.1 51 798-849 27-81 (84)
465 KOG3091 Nuclear pore complex, 74.9 1.4E+02 0.003 35.7 17.1 40 496-535 274-319 (508)
466 KOG0992 Uncharacterized conser 74.7 2E+02 0.0042 34.5 29.9 39 712-750 384-422 (613)
467 PF07798 DUF1640: Protein of u 74.5 1.1E+02 0.0023 31.5 22.0 27 660-686 73-99 (177)
468 PRK12705 hypothetical protein; 74.5 2E+02 0.0044 34.7 24.7 11 688-698 142-152 (508)
469 PF09731 Mitofilin: Mitochondr 74.4 2.1E+02 0.0045 34.7 28.5 14 123-136 8-21 (582)
470 KOG3771 Amphiphysin [Intracell 74.3 84 0.0018 37.1 15.2 19 524-542 5-23 (460)
471 TIGR02231 conserved hypothetic 73.8 35 0.00075 40.8 12.7 30 577-606 72-101 (525)
472 PRK15178 Vi polysaccharide exp 73.7 1.6E+02 0.0035 34.8 17.5 25 643-667 283-307 (434)
473 PRK15178 Vi polysaccharide exp 73.6 1.1E+02 0.0023 36.2 16.0 57 592-662 281-337 (434)
474 PF12329 TMF_DNA_bd: TATA elem 73.6 39 0.00085 30.1 9.8 46 630-675 24-69 (74)
475 PRK03947 prefoldin subunit alp 73.5 95 0.0021 30.4 14.4 15 648-662 110-124 (140)
476 KOG4460 Nuclear pore complex, 73.3 2.2E+02 0.0048 34.5 20.6 30 634-663 657-686 (741)
477 KOG1962 B-cell receptor-associ 73.3 60 0.0013 34.8 12.7 20 690-709 181-200 (216)
478 TIGR03321 alt_F1F0_F0_B altern 73.3 1.3E+02 0.0029 32.4 15.9 31 632-662 36-66 (246)
479 cd00632 Prefoldin_beta Prefold 73.0 79 0.0017 29.6 12.4 25 536-560 18-42 (105)
480 KOG2891 Surface glycoprotein [ 72.9 1.6E+02 0.0034 32.7 21.5 18 599-616 333-350 (445)
481 PF03148 Tektin: Tektin family 72.6 1.9E+02 0.0041 33.5 25.8 51 565-615 240-290 (384)
482 PRK14474 F0F1 ATP synthase sub 72.3 1.4E+02 0.0031 32.5 15.8 95 630-733 34-128 (250)
483 KOG2264 Exostosin EXT1L [Signa 72.2 32 0.00069 41.2 11.2 74 616-689 77-150 (907)
484 TIGR03794 NHPM_micro_HlyD NHPM 72.1 2E+02 0.0043 33.4 20.4 149 586-745 92-248 (421)
485 PF10267 Tmemb_cc2: Predicted 72.0 2E+02 0.0044 33.6 18.3 198 379-603 97-318 (395)
486 PF04949 Transcrip_act: Transc 71.9 1.2E+02 0.0026 30.8 19.7 132 603-749 23-159 (159)
487 COG4026 Uncharacterized protei 71.8 1E+02 0.0022 33.3 13.7 99 517-622 104-202 (290)
488 TIGR02338 gimC_beta prefoldin, 71.7 47 0.001 31.4 10.6 91 511-609 5-107 (110)
489 PRK03598 putative efflux pump 71.6 1.5E+02 0.0032 33.1 16.3 102 577-678 82-203 (331)
490 PRK09174 F0F1 ATP synthase sub 71.5 1.4E+02 0.0031 31.5 15.8 95 630-733 82-176 (204)
491 PRK15422 septal ring assembly 71.4 72 0.0016 29.0 10.8 69 583-651 4-72 (79)
492 PF05600 DUF773: Protein of un 71.4 1.3E+02 0.0027 36.3 16.4 128 541-678 354-492 (507)
493 PF12761 End3: Actin cytoskele 71.3 22 0.00048 37.4 8.8 94 571-667 98-195 (195)
494 KOG1962 B-cell receptor-associ 71.2 65 0.0014 34.5 12.4 90 637-741 112-210 (216)
495 PF05791 Bacillus_HBL: Bacillu 71.1 1.3E+02 0.0029 31.1 16.7 139 502-677 42-180 (184)
496 KOG4677 Golgi integral membran 71.0 2.2E+02 0.0049 33.6 28.6 324 401-746 40-398 (554)
497 PF12072 DUF3552: Domain of un 70.9 1.4E+02 0.0031 31.3 24.1 153 531-683 23-188 (201)
498 PRK13453 F0F1 ATP synthase sub 70.7 1.3E+02 0.0028 30.8 15.9 96 648-743 44-141 (173)
499 PF08826 DMPK_coil: DMPK coile 70.5 70 0.0015 27.7 10.2 60 650-709 1-60 (61)
500 KOG3915 Transcription regulato 70.3 47 0.001 39.0 11.8 87 623-709 501-591 (641)
No 1
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.96 E-value=5.1e-27 Score=279.14 Aligned_cols=188 Identities=12% Similarity=0.125 Sum_probs=149.9
Q ss_pred hhhccchhhcccccccccccCCCCCCCCCchhHHHHHHhhhcCccchhhhhhcCCCccccCCcccCCccccccccCCCCC
Q 002997 319 SLSSLGEHAQNMSLTLGSDERSGNGRKGRSKKELAILRQKSCHVPTEKSYRTYGKGAFRSGKLASMGGFVLEKRVRPASD 398 (859)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~r~~~~~~~~~k~~~~lG~kas~tnr~~sl~s~v~~K~g~~~s~ 398 (859)
.|||-.. +--.+.+--..|.+.-|+-|-- +| .+-.=.|||+||.||||+|||+|| |.|+.+|.
T Consensus 49 NFMCHsn----L~IeFg~~vNfI~G~NGSGKSA--Il---------tAl~lglG~rAs~tnRgsslK~lI--K~G~~~A~ 111 (1074)
T KOG0250|consen 49 NFMCHSN----LLIEFGPRVNFIVGNNGSGKSA--IL---------TALTLGLGGRASATNRGSSLKDLI--KDGCSSAK 111 (1074)
T ss_pred eeccccc----ceeccCCCceEeecCCCCcHHH--HH---------HHHHHhhccccccccchhhHHHHH--hCCCcceE
Confidence 4666543 2122333445666665555532 34 344446899999999999999999 99999999
Q ss_pred ccccccCCCCCccc-------------------cccccc-cccCCCCcccccCCCCCCCCCCCCCCCCCCCCcCCCCCCc
Q 002997 399 LSAVHPKSGPSKIS-------------------ADTGAA-AASRDRGHCASTRTPLAHPVSDSPSSLPTKGTTLALPVPN 458 (859)
Q Consensus 399 ~~~v~ikn~~~~a~-------------------s~~~vk-~~~~~~~~~~~stk~~~~~~i~~~~~lq~~np~~~Lsqd~ 458 (859)
|+ |+|+|+|.+|| |.+-++ ++.|+ +||||+.|++.|+++|+|||+||+++||||.
T Consensus 112 Is-ItL~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~gr----vVStKk~dl~~vv~~f~I~veNP~~~lsQD~ 186 (1074)
T KOG0250|consen 112 IS-ITLSNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGR----VVSTKKEDLDTVVDHFNIQVENPMFVLSQDA 186 (1074)
T ss_pred EE-EEEecCCcccCChhhcCCeeEEEEeeccccchHHHHhhccCc----cccccHHHHHHHHHHhCcCCCCcchhhcHHH
Confidence 99 99999999999 344444 78888 9999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCccccccCCCCCCCCcccccccc----------cc---cccccCCCCCchHHHHHhhcccHHHHHHHH
Q 002997 459 TELVASSSSKKNPDIKAVATTSPSPKLPEYYAGIP----------FD---ETLGRYIPQNGKDELILKLVPWVPELQNEL 525 (859)
Q Consensus 459 ar~fLss~~~~~~~~~~~~~~~~stp~~ky~~~i~----------yd---e~l~~~v~~D~k~e~i~~l~~~v~~L~~~~ 525 (859)
||+||.+ ++|..+|+||++ |- +++ |...+.|..+.+.+..++++.
T Consensus 187 aR~FL~~----------------~~p~dkYklfmkaT~L~qi~~~~~~~~~~~------~~~~~~i~~~~e~i~~l~k~i 244 (1074)
T KOG0250|consen 187 ARSFLAN----------------SNPKDKYKLFMKATQLEQITESYSEIMESL------DHAKELIDLKEEEIKNLKKKI 244 (1074)
T ss_pred HHHHHhc----------------CChHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhHHHHHHH
Confidence 9999999 889999999999 33 777 888899999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 526 NSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQ 562 (859)
Q Consensus 526 ~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~ 562 (859)
++ ++.+.+.+.+++.+.+..+.++.
T Consensus 245 ~e------------~~e~~~~~~~~e~~~~~l~~Lk~ 269 (1074)
T KOG0250|consen 245 KE------------EEEKLDNLEQLEDLKENLEQLKA 269 (1074)
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 66666666666665555444443
No 2
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-16 Score=185.97 Aligned_cols=306 Identities=16% Similarity=0.194 Sum_probs=175.7
Q ss_pred CCCCCchHHHHHhhcccHHHHHHHHhHhHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 501 YIPQNGKDELILKLVPWVPELQNELNSWTEWANQKVM----QAARRLS-KDQAELKALRHEKQEVEQCQKDKQILEENTV 575 (859)
Q Consensus 501 ~v~~D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~----qaA~rL~-ke~~eLk~LR~ekeelq~lkkekq~lee~t~ 575 (859)
-+|++.++++-.+....+-.+-.++..|.+-...+.- ..+.|-. ......+.|+.....++.+..+.+. +-
T Consensus 385 ~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t----~g 460 (698)
T KOG0978|consen 385 SLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMET----IG 460 (698)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 4566666666666666666666666665543333322 1122211 1111222233333333332221111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 576 KRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREEL 655 (859)
Q Consensus 576 KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL 655 (859)
.-.++|+..+.++-.|++......-++-.+........-............++.+.........++..++.|...++...
T Consensus 461 sA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~ 540 (698)
T KOG0978|consen 461 SAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNE 540 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 13455666666666666655555555555555555555555555556666666666666677777777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002997 656 ATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGK 735 (859)
Q Consensus 656 ~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkr 735 (859)
.....++..+.+-++..++....+.......+...+...++++..+........ ++...+...++
T Consensus 541 ~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~---------------ele~~~~k~~r 605 (698)
T KOG0978|consen 541 SKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELEL---------------ELEIEKFKRKR 605 (698)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 666666666666666666666555555444444444444444433332222222 22233334456
Q ss_pred HHHHHHHHhhcCcchHHHHhcccCCCCCCCCCCCCCcccccCCcccccccCCCCCCCCcccccCCCccccccccccCcCc
Q 002997 736 LESQLSLLKYKSDSSKIAALRGSVDGGFMPDGKIENPAMKKGSKIPGLLMGGGSSSGSSLMGGLKRERECVVCLAEEKSV 815 (859)
Q Consensus 736 LEeELeqLr~k~~s~~iaaL~~~~d~~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~e~~e~l~~~~~C~ICle~~~~~ 815 (859)
+++++++|+++... ++....+ .+.+..|.. ++..++..+.|++|.++++++
T Consensus 606 leEE~e~L~~kle~-----~k~~~~~---------------~s~d~~L~E---------Elk~yK~~LkCs~Cn~R~Kd~ 656 (698)
T KOG0978|consen 606 LEEELERLKRKLER-----LKKEESG---------------ASADEVLAE---------ELKEYKELLKCSVCNTRWKDA 656 (698)
T ss_pred HHHHHHHHHHHHHH-----hcccccc---------------ccccHHHHH---------HHHHHHhceeCCCccCchhhH
Confidence 66666666666321 1111110 111233332 357788899999999999999
Q ss_pred EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC--ceEEE
Q 002997 816 VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ--RIQVR 855 (859)
Q Consensus 816 VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~--~i~i~ 855 (859)
|++.|||. ||..|+...+..++++||.|.++|+. +.+||
T Consensus 657 vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 657 VITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 99999999 99999999999899999999999964 45555
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.06 E-value=1.4e-07 Score=119.08 Aligned_cols=91 Identities=3% Similarity=-0.070 Sum_probs=52.9
Q ss_pred hcCCCccccCCcccCCccccccccCC------CCCccccccCCCCCc----cccccccc---cccCCCCcccccCC---C
Q 002997 370 TYGKGAFRSGKLASMGGFVLEKRVRP------ASDLSAVHPKSGPSK----ISADTGAA---AASRDRGHCASTRT---P 433 (859)
Q Consensus 370 ~lG~kas~tnr~~sl~s~v~~K~g~~------~s~~~~v~ikn~~~~----a~s~~~vk---~~~~~~~~~~~stk---~ 433 (859)
.+|+..+++.|+.+++.+| +.|.. .+.+. +...+.+.. .|..+.|. ...|. +...+..+ .
T Consensus 46 ~lg~~~~~~~r~~~~~~~i--~~g~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~i~r~~~~~~~-~~~~~~~~~~~~ 121 (1179)
T TIGR02168 46 VLGEQSAKALRGGKMEDVI--FNGSETRKPLSLAEVE-LVFDNSDGLLPGADYSEISITRRLYRDGE-SEYFINGQPCRL 121 (1179)
T ss_pred HHcCCchhhhhhccchhhh--cCCCcccCCCCeeEEE-EEEecCCCCCCCCCCCeEEEEEEEeeCCC-ceeeECCCcccH
Confidence 4677778899999999999 66763 23333 555543211 12233333 11121 11112222 2
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCchhhhccc
Q 002997 434 LAHPVSDSPSSLPTKGTTLALPVPNTELVASS 465 (859)
Q Consensus 434 ~~~~~i~~~~~lq~~np~~~Lsqd~ar~fLss 465 (859)
.++..+...+.|.++++ ++++|.....|+..
T Consensus 122 ~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~ 152 (1179)
T TIGR02168 122 KDIQDLFLDTGLGKRSY-SIIEQGKISEIIEA 152 (1179)
T ss_pred HHHHHHHhccCCCcccc-hheecccHHHHHcC
Confidence 33444566677888876 79999999999976
No 4
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.4e-10 Score=94.27 Aligned_cols=53 Identities=30% Similarity=0.709 Sum_probs=48.9
Q ss_pred cccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEE
Q 002997 803 RECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVR 855 (859)
Q Consensus 803 ~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~ 855 (859)
.+|.||++.+.+.|+..|||+|+|..|..+.+......||+||+||..+|+.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 68999999999999999999999999999888766689999999999998876
No 5
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.88 E-value=9.5e-10 Score=89.19 Aligned_cols=48 Identities=40% Similarity=1.020 Sum_probs=42.0
Q ss_pred ccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 802 ERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 802 ~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
+..|.||++.+.+++++||||.+||..|+..+.. ....||+||++|..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 4689999999999999999999999999998887 55899999999864
No 6
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.4e-09 Score=115.98 Aligned_cols=58 Identities=38% Similarity=0.927 Sum_probs=51.0
Q ss_pred CCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEecC
Q 002997 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRFAQ 858 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~~~ 858 (859)
+...+|+||++..++++++||.|.|+|..|++...-+ ...||+||.+|...+.|+...
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ll~i~~~~ 345 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEELLEIYVNK 345 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHhhheecccc
Confidence 5567999999999999999999999999999966532 368999999999999988764
No 7
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.75 E-value=1.6e-06 Score=104.71 Aligned_cols=311 Identities=16% Similarity=0.182 Sum_probs=176.4
Q ss_pred ccccccCCCCCCCCCchhHHHHHHhhhcCccchhhhhhcCCCccccCCcccCCccccccccCCCCCccccccCCCCCccc
Q 002997 333 TLGSDERSGNGRKGRSKKELAILRQKSCHVPTEKSYRTYGKGAFRSGKLASMGGFVLEKRVRPASDLSAVHPKSGPSKIS 412 (859)
Q Consensus 333 ~~~~~~~~~~~~k~~~~~~~~~~r~~~~~~~~~k~~~~lG~kas~tnr~~sl~s~v~~K~g~~~s~~~~v~ikn~~~~a~ 412 (859)
.|.+-=.+|.+|-|+-|-.+ +-+.-=.|||+.---||+-..+-|| |.|++.+.|- |.+++.+-...
T Consensus 39 ~pgpsLNmIiGpNGSGKSSi-----------VcAIcLglgG~Pk~lGRak~VgeyI--K~G~~~g~IE-I~l~~~~e~~~ 104 (1072)
T KOG0979|consen 39 LPGPSLNMIIGPNGSGKSSI-----------VCAICLGLGGKPKLLGRAKKVGEYI--KRGEDEGYIE-IELKDKDETLT 104 (1072)
T ss_pred cCCCceeeEECCCCCCchHH-----------HHHHHHHcCCChhhccchhHHHHHH--hcCCccceEE-EEEecCCCceE
Confidence 34444467788877666666 2233346899999999999999999 9999999987 88887743322
Q ss_pred cccccccccCCCCc---ccccCCCCCCCCCCCCCCCCCCCCcCCCCCCchhhhcccCCCCCCccccccCCCCCCCCcccc
Q 002997 413 ADTGAAAASRDRGH---CASTRTPLAHPVSDSPSSLPTKGTTLALPVPNTELVASSSSKKNPDIKAVATTSPSPKLPEYY 489 (859)
Q Consensus 413 s~~~vk~~~~~~~~---~~~stk~~~~~~i~~~~~lq~~np~~~Lsqd~ar~fLss~~~~~~~~~~~~~~~~stp~~ky~ 489 (859)
=++.-+-.++ |- |=.+|+++++.+++..|++|++|+--.||||--.-|--. ++
T Consensus 105 -ItR~I~~~k~-S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L----------------~p------ 160 (1072)
T KOG0979|consen 105 -ITRLISRDKE-SKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARL----------------SP------ 160 (1072)
T ss_pred -EEEEEeecCC-cceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcC----------------Ch------
Confidence 0111111111 11 135788899999999999999999999999988777666 11
Q ss_pred cccc-cccccccCCCCC---chHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 490 AGIP-FDETLGRYIPQN---GKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQK 565 (859)
Q Consensus 490 ~~i~-yde~l~~~v~~D---~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkk 565 (859)
|. +-++. .-|..+ +--.-+.+|..+-+.|+..+..-++ +-+++-|...+|.++....+.-...+..++-+.+
T Consensus 161 --i~LL~eTe-kAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~-~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~ 236 (1072)
T KOG0979|consen 161 --IELLVETE-KAIGAEELLQYHIELMDLREDEKSLEDKLTTKTE-KLNRLEDEIDKLEKDVERVRERERKKSKIELLEK 236 (1072)
T ss_pred --HHHHHHHH-HhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00111 011111 1113344455555555555444111 1112222222222222222221111111111100
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 566 DKQILE-ENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSL 644 (859)
Q Consensus 566 ekq~le-e~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~ 644 (859)
.+.-++ +.........-.+...+..++...+..+..++..+.+++.+......+.......|.+...+-+...+.+...
T Consensus 237 k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~ 316 (1072)
T KOG0979|consen 237 KKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEI 316 (1072)
T ss_pred hccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0111123333334444444444444445555555555555555555566666677777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 645 EAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWRE 685 (859)
Q Consensus 645 EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qe 685 (859)
++.+..++.+++..+.+-...+..++.++..+..++..+++
T Consensus 317 ~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 317 EDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888888888888888888888777666544
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.74 E-value=7.9e-06 Score=103.80 Aligned_cols=26 Identities=4% Similarity=0.103 Sum_probs=19.6
Q ss_pred chhhhhhcCCCccccCCcccCCcccc
Q 002997 364 TEKSYRTYGKGAFRSGKLASMGGFVL 389 (859)
Q Consensus 364 ~~k~~~~lG~kas~tnr~~sl~s~v~ 389 (859)
++..+=.|||..++++|+..++.||-
T Consensus 40 ldAi~~~l~~~~~~~~r~~~~~~~i~ 65 (1164)
T TIGR02169 40 GDAILFALGLSSSKAMRAERLSDLIS 65 (1164)
T ss_pred HHHHHHHhccchhhhhhhhhHHHhhc
Confidence 44555567888778889888889883
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.73 E-value=8.4e-06 Score=104.46 Aligned_cols=94 Identities=4% Similarity=-0.003 Sum_probs=62.6
Q ss_pred hhhhhcCCCccccCCcccCCccccccccCCC------CCccccccCCCCCccccccc-------cccccCCCCcccccCC
Q 002997 366 KSYRTYGKGAFRSGKLASMGGFVLEKRVRPA------SDLSAVHPKSGPSKISADTG-------AAAASRDRGHCASTRT 432 (859)
Q Consensus 366 k~~~~lG~kas~tnr~~sl~s~v~~K~g~~~------s~~~~v~ikn~~~~a~s~~~-------vk~~~~~~~~~~~stk 432 (859)
...=.||...+++-||++|.++| ..|... +.++ +.+.|...-...+|. |.. .|. |..+|..+
T Consensus 43 Ai~fVLG~~s~k~lRa~~~~DlI--f~g~~~r~~~~~A~V~-l~fdN~d~~~~~~~~ei~v~Rri~r-~g~-S~Y~INg~ 117 (1163)
T COG1196 43 AIRFVLGEQSAKNLRASKMSDLI--FAGSGNRKPANYAEVE-LTFDNSDNTLPLEYEEISVTRRIYR-DGE-SEYYINGE 117 (1163)
T ss_pred HHHHHhCcchhhhhhccCCccee--eCCCCCCCCCCceEEE-EEEeCCCCcCCcccceEEEEEEEEE-cCC-cEEEECCc
Confidence 33336888889999999999999 777776 7777 888888733333333 121 222 33333333
Q ss_pred CC---CCCCCCCCCCCCCCCCcCCCCCCchhhhccc
Q 002997 433 PL---AHPVSDSPSSLPTKGTTLALPVPNTELVASS 465 (859)
Q Consensus 433 ~~---~~~~i~~~~~lq~~np~~~Lsqd~ar~fLss 465 (859)
.- ++-.+..-+.|..++| ++.+|-.-..|+++
T Consensus 118 ~~~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~~ 152 (1163)
T COG1196 118 KVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINA 152 (1163)
T ss_pred EeeHHHHHHHHHhcCCCCCCC-ceeecccHHHHHcC
Confidence 32 3333455677888999 99999998888888
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.69 E-value=1.7e-08 Score=103.14 Aligned_cols=59 Identities=20% Similarity=0.486 Sum_probs=47.5
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhc---------------CCCCCCCccccccC--ceEEEe
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQ---------------GMNDCPSCRSPIQQ--RIQVRF 856 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~---------------~~~~CP~CR~~i~~--~i~i~~ 856 (859)
-+......|+||++...++|+++|||. ||..|+..|... ....||+||.+|.. .+.+|+
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 344567899999999999999999999 999999987531 23579999999965 456653
No 11
>PRK11637 AmiB activator; Provisional
Probab=98.58 E-value=5.5e-05 Score=87.17 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 628 QEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 628 qeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
..+...++++++.+.....++...+.+++..+.++..+..+++..+..+..
T Consensus 162 ~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~ 212 (428)
T PRK11637 162 GYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQ 212 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666655555555555554444444433
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.58 E-value=3.6e-08 Score=77.56 Aligned_cols=39 Identities=41% Similarity=0.876 Sum_probs=31.1
Q ss_pred cccccccCcCcEEeCCCchhhhHHhHHHHhhcCC---CCCCCc
Q 002997 805 CVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGM---NDCPSC 844 (859)
Q Consensus 805 C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~---~~CP~C 844 (859)
|+||++.+.++|.++|||. ||..|+..++.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 99999999987543 369988
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.7e-08 Score=98.63 Aligned_cols=53 Identities=30% Similarity=0.664 Sum_probs=42.5
Q ss_pred ccccccccccCc--CcEEeCCCchhhhHHhHHHHhhcCCCCCCCcccccc--CceEEEe
Q 002997 802 ERECVVCLAEEK--SVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ--QRIQVRF 856 (859)
Q Consensus 802 ~~~C~ICle~~~--~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~--~~i~i~~ 856 (859)
-..|+||++... .+|.++|||. ||..||....+. ..+||.||+.|. ++++||+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKN-TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHh-CCCCCCcccccchhhheeccC
Confidence 368999999744 4566899999 999999977764 479999998885 4577774
No 14
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.4e-08 Score=103.92 Aligned_cols=51 Identities=27% Similarity=0.661 Sum_probs=45.1
Q ss_pred CCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCce
Q 002997 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRI 852 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i 852 (859)
+....|.+|++...++..+||||. ||..||..|.... ..||.||..+...-
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek-~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEK-AECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccc-cCCCcccccCCCcc
Confidence 556899999999999999999999 9999999998754 67999999997543
No 15
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.52 E-value=6.6e-08 Score=102.52 Aligned_cols=56 Identities=30% Similarity=0.832 Sum_probs=45.7
Q ss_pred CCccccccccccCcC--------cEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEec
Q 002997 800 KRERECVVCLAEEKS--------VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRFA 857 (859)
Q Consensus 800 ~~~~~C~ICle~~~~--------~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~~ 857 (859)
.....|+||++...+ +++++|+|. ||..|+..|.. ....||+||.+|..+++.+|-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~-~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKK-EKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHh-cCCCCCCCCCEeeEEeeeeee
Confidence 445799999997543 367789999 99999999876 457999999999988877653
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.47 E-value=0.00031 Score=89.44 Aligned_cols=11 Identities=9% Similarity=-0.215 Sum_probs=4.9
Q ss_pred CCCchhhhccc
Q 002997 455 PVPNTELVASS 465 (859)
Q Consensus 455 sqd~ar~fLss 465 (859)
.|-.-..|+..
T Consensus 140 ~qg~~~~~~~~ 150 (1164)
T TIGR02169 140 LQGDVTDFISM 150 (1164)
T ss_pred ecchHHHHHCC
Confidence 34444444444
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.45 E-value=0.00045 Score=87.80 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=6.8
Q ss_pred ccccccCCcccc
Q 002997 4 SGANKAGSCSVL 15 (859)
Q Consensus 4 ~~~~~~~~~~~~ 15 (859)
.|.|-+|-+++.
T Consensus 29 ~G~NGsGKS~ll 40 (1179)
T TIGR02168 29 VGPNGCGKSNIV 40 (1179)
T ss_pred ECCCCCChhHHH
Confidence 356666666543
No 18
>PRK11637 AmiB activator; Provisional
Probab=98.44 E-value=0.00022 Score=82.22 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002997 573 NTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSC 627 (859)
Q Consensus 573 ~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~l 627 (859)
...++|...+..|..++.+|+..+..+..++.++..++++++..+..+......+
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555555555555444444443333
No 19
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.41 E-value=1.5e-07 Score=72.57 Aligned_cols=38 Identities=37% Similarity=0.958 Sum_probs=33.1
Q ss_pred cccccccCcCc-EEeCCCchhhhHHhHHHHhhcCCCCCCCc
Q 002997 805 CVVCLAEEKSV-VFLPCAHQVLCQKCNELHEKQGMNDCPSC 844 (859)
Q Consensus 805 C~ICle~~~~~-VllpCgH~vfC~~Ci~~~~~~~~~~CP~C 844 (859)
|+||++...++ ++++|||. ||..|+..+... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68999999 999999998886 5899998
No 20
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.9e-07 Score=97.22 Aligned_cols=57 Identities=21% Similarity=0.465 Sum_probs=47.5
Q ss_pred CCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcC--CCCCCCccccccC--ceEEEec
Q 002997 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQG--MNDCPSCRSPIQQ--RIQVRFA 857 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~--~~~CP~CR~~i~~--~i~i~~~ 857 (859)
.....|.||++..+++|++.|||. ||..|+-+|.... ...||+|+..|.. +|.||+-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 345689999999999999999999 9999999998643 3468999998854 5777763
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=98.34 E-value=0.00047 Score=85.98 Aligned_cols=34 Identities=9% Similarity=-0.019 Sum_probs=16.7
Q ss_pred hcCCCccccCCcccCCccccccccCCCCCccccccCC
Q 002997 370 TYGKGAFRSGKLASMGGFVLEKRVRPASDLSAVHPKS 406 (859)
Q Consensus 370 ~lG~kas~tnr~~sl~s~v~~K~g~~~s~~~~v~ikn 406 (859)
.|+|...+..|+.....|| ..|...+.+. +.+..
T Consensus 46 ~l~~~~~~~~~~~~~~~~~--~~~~~~~~v~-~~f~~ 79 (880)
T PRK03918 46 GLYWGHGSKPKGLKKDDFT--RIGGSGTEIE-LKFEK 79 (880)
T ss_pred HhcCCCCCCccccChhhcc--cCCCCCEEEE-EEEEE
Confidence 4444323334444445677 6666555544 44433
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=98.34 E-value=2.5e-07 Score=95.83 Aligned_cols=58 Identities=21% Similarity=0.571 Sum_probs=45.1
Q ss_pred ccCCCccccccccccC---------cCcEEeCCCchhhhHHhHHHHhhcC-----CCCCCCccccccCceEEE
Q 002997 797 GGLKRERECVVCLAEE---------KSVVFLPCAHQVLCQKCNELHEKQG-----MNDCPSCRSPIQQRIQVR 855 (859)
Q Consensus 797 e~l~~~~~C~ICle~~---------~~~VllpCgH~vfC~~Ci~~~~~~~-----~~~CP~CR~~i~~~i~i~ 855 (859)
-....+..|.||++.. +-.++.+|+|. ||..|+..|.... .+.||+||..|..++...
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSr 236 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITMSK 236 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecccc
Confidence 3446678999999863 23578899999 9999999998643 245999999998776553
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=3.2e-07 Score=103.71 Aligned_cols=53 Identities=25% Similarity=0.521 Sum_probs=46.7
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
++.++....|+||++.+.++|+++|||. ||..|+..++.. ...||.|+.++..
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~-~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSN-QPKCPLCRAEDQE 72 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhC-CCCCCCCCCcccc
Confidence 4567788999999999999999999999 999999988864 4689999998864
No 24
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7.5e-08 Score=102.43 Aligned_cols=50 Identities=38% Similarity=0.921 Sum_probs=46.0
Q ss_pred ccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEe
Q 002997 802 ERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRF 856 (859)
Q Consensus 802 ~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~ 856 (859)
...|.||++.+++.+|++|||.|.|..|-. ++..||+||+.|..+++||-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHHHHHHhhhc
Confidence 678999999999999999999999999977 67799999999988888873
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.26 E-value=0.00087 Score=71.46 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002997 542 RLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEM 613 (859)
Q Consensus 542 rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEm 613 (859)
+++..-.++..|.-++...+..-+..+...+...+.+..++.++.....|+-+.+..++.+...++..+..+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433444444555556666666666666665555555555544444444444
No 26
>PRK02224 chromosome segregation protein; Provisional
Probab=98.25 E-value=0.0015 Score=81.67 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=13.8
Q ss_pred hHHHHHhhcccHHHHHHHHhHhH
Q 002997 507 KDELILKLVPWVPELQNELNSWT 529 (859)
Q Consensus 507 k~e~i~~l~~~v~~L~~~~~e~~ 529 (859)
..+.+.++..++.+|+.++++|+
T Consensus 473 ~~~~~~~~~~~~~~le~~l~~~~ 495 (880)
T PRK02224 473 DRERVEELEAELEDLEEEVEEVE 495 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666644
No 27
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.24 E-value=0.0062 Score=73.77 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=34.2
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQ 547 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~ 547 (859)
|.++..|..+.+.+..++.++..-+.-|+..+-|.-.++...-
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le 371 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALE 371 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877777777766655554433
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.22 E-value=0.0017 Score=69.45 Aligned_cols=114 Identities=19% Similarity=0.181 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~ 656 (859)
...+.+.++..+.+........+..|+..+...+...+.+..++.+....+..+...-..+-.++...+..+..|+++|.
T Consensus 72 ~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 72 RADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444444444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 657 TEKQKVAVLQQEISKAENRHNQLETRWREERMAR 690 (859)
Q Consensus 657 ~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~k 690 (859)
.....+..+....+.+......++.++......+
T Consensus 152 ~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 152 SVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555555544444444444444444443333333
No 29
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.21 E-value=1.1e-06 Score=73.93 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=41.6
Q ss_pred cccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 803 RECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 803 ~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
..|+||.+...++|+++|||. ||..|+..+... ...||.|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 579999999999999999999 999999999875 5789999999843
No 30
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.19 E-value=9.7e-07 Score=68.33 Aligned_cols=39 Identities=36% Similarity=0.949 Sum_probs=35.4
Q ss_pred cccccccCcCcE-EeCCCchhhhHHhHHHHhh-cCCCCCCCc
Q 002997 805 CVVCLAEEKSVV-FLPCAHQVLCQKCNELHEK-QGMNDCPSC 844 (859)
Q Consensus 805 C~ICle~~~~~V-llpCgH~vfC~~Ci~~~~~-~~~~~CP~C 844 (859)
|+||++...+++ +++|||. ||..|+..++. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 899999999998 9999999 99999998887 556789998
No 31
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.17 E-value=7.9e-07 Score=70.16 Aligned_cols=40 Identities=45% Similarity=0.949 Sum_probs=34.3
Q ss_pred ccccccccC---cCcEEeCCCchhhhHHhHHHHhhcCCCCCCCcc
Q 002997 804 ECVVCLAEE---KSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCR 845 (859)
Q Consensus 804 ~C~ICle~~---~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR 845 (859)
.|+||++.+ ..++.++|||. ||..|+..|.... ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhC-CcCCccC
Confidence 699999975 57888999999 9999999998764 6999997
No 32
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.15 E-value=1.8e-06 Score=66.37 Aligned_cols=44 Identities=48% Similarity=1.088 Sum_probs=36.2
Q ss_pred ccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCccccc
Q 002997 804 ECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 804 ~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
.|+||++....++.+ +|||. ||..|+..+.......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998555555 59999 999999988876567899999764
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.15 E-value=6.4e-07 Score=97.02 Aligned_cols=51 Identities=22% Similarity=0.560 Sum_probs=44.7
Q ss_pred cCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 798 GLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
.+...+.|-||.+.+.-++++||+|. ||..||..+.. ....||.|+.+|..
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~-~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLS-YKPQCPTCCVTVTE 69 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhc-cCCCCCceecccch
Confidence 44566899999999999999999999 99999998886 45789999998864
No 34
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.14 E-value=0.0016 Score=79.97 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002997 545 KDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSA 624 (859)
Q Consensus 545 ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~ 624 (859)
-++.....|..+.+..+....+++.-.+.....|++.+.+...+..-|+.+...++-....+++++.++.+|+..+....
T Consensus 1539 ~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1539 GDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSAT 1618 (1758)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544455555566666777788888888888888888888887788888888887776655444
Q ss_pred HHH
Q 002997 625 VSC 627 (859)
Q Consensus 625 k~l 627 (859)
+.+
T Consensus 1619 q~~ 1621 (1758)
T KOG0994|consen 1619 QQL 1621 (1758)
T ss_pred HHH
Confidence 443
No 35
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.14 E-value=0.0055 Score=79.12 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002997 575 VKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEM 613 (859)
Q Consensus 575 ~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEm 613 (859)
..++..+++.+..+..+++..+..+..++.++..+...+
T Consensus 736 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555544444444444444444444443333
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.12 E-value=9.2e-07 Score=94.09 Aligned_cols=51 Identities=25% Similarity=0.513 Sum_probs=45.0
Q ss_pred cCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 798 GLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
.+...+.|-||.+.++-+++++|||. ||..||..+.. .+..||.||.++..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~-~qp~CP~Cr~~~~e 71 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLG-TQPFCPVCREDPCE 71 (391)
T ss_pred cchhHHHhhhhhheeecceecccccc-hhHHHHHHHhc-CCCCCccccccHHh
Confidence 45667899999999999999999999 99999999886 45789999998754
No 37
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.12 E-value=0.0029 Score=83.39 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQL 707 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ 707 (859)
.+.....++..++.++.....++..++.++++.+..+.+++..+++......++..+++.++..+.++
T Consensus 1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ 1123 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKA 1123 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555555555666556666666666666666666666666666666666666665554444433
No 38
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.4e-06 Score=99.45 Aligned_cols=55 Identities=27% Similarity=0.526 Sum_probs=46.7
Q ss_pred ccccccccccCcCcEEeCCCchhhhHHhHHHHhhcC----CCCCCCccccccC--ceEEEec
Q 002997 802 ERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQG----MNDCPSCRSPIQQ--RIQVRFA 857 (859)
Q Consensus 802 ~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~----~~~CP~CR~~i~~--~i~i~~~ 857 (859)
...||||++.+.-++.+.|||. ||..|+-++|... .+.||+||..|.. .-.|++.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 7889999999999999999999 9999999998744 4679999999976 4555543
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.12 E-value=0.015 Score=68.56 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 663 AVLQQEISKAENRHNQLETRWREERMA 689 (859)
Q Consensus 663 ~~lqqELEeaK~~veqlE~r~qeekk~ 689 (859)
+.+..+|.++...+++...+|.++++.
T Consensus 335 aql~~qLad~~l~lke~~~q~~qEk~~ 361 (546)
T PF07888_consen 335 AQLKLQLADASLELKEGRSQWAQEKQA 361 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455554443
No 40
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.12 E-value=2.7e-06 Score=63.18 Aligned_cols=39 Identities=46% Similarity=1.050 Sum_probs=35.2
Q ss_pred cccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCc
Q 002997 805 CVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSC 844 (859)
Q Consensus 805 C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~C 844 (859)
|+||++....+++++|||. ||..|+..+.......||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 8999999999999999999 99999998877555789988
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.11 E-value=0.006 Score=65.19 Aligned_cols=154 Identities=18% Similarity=0.247 Sum_probs=69.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 518 VPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSS 597 (859)
Q Consensus 518 v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a 597 (859)
+..|+.++++ |.+++-.+-..|......+..+..+...+.+.....+.--+.+..+|.....+|..+....+....
T Consensus 3 ~~~l~~eld~----~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er 78 (237)
T PF00261_consen 3 IQQLKDELDE----AEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESER 78 (237)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 444443333334433333444444444444332222222233444555555555555555555544
Q ss_pred HHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 598 TVHTLE-------MEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEIS 670 (859)
Q Consensus 598 ~vr~LE-------~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELE 670 (859)
..+.|+ ..+..+..++..|+..+.+....+.++..+-..+-..+...+.. +.....++..+..+|.
T Consensus 79 ~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR-------~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 79 ARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEER-------AEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhchhHHHHHHHHH
Confidence 554444 44444455555555555555554444444444444444444444 4444444444444444
Q ss_pred HHHHHHHHHHHH
Q 002997 671 KAENRHNQLETR 682 (859)
Q Consensus 671 eaK~~veqlE~r 682 (859)
.....+..++.+
T Consensus 152 ~~~~~lk~lE~~ 163 (237)
T PF00261_consen 152 SVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 444444444433
No 42
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.05 E-value=0.0048 Score=74.58 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-H
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAAN----LRAAKSAVSCQEAFEREQKALKNAQSL---EAQ-R 648 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAK----l~~~es~k~lqeI~ekErk~lerLka~---EkQ-~ 648 (859)
+.+-.|+..+.++..|+.++..+..|+.+++-+++||+.-- ..-.-..+.+.+--.+-++++-++..+ +++ .
T Consensus 319 dKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~ 398 (1243)
T KOG0971|consen 319 DKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDH 398 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34455777888889999999999999999999999998731 111112223333333344444444443 222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 649 VLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERM 688 (859)
Q Consensus 649 a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk 688 (859)
.+++.+++..+.++..+.+.-+.+.+++.++|..+..-++
T Consensus 399 qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 399 QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666665555444333
No 43
>PRK02224 chromosome segregation protein; Provisional
Probab=98.03 E-value=0.008 Score=75.27 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=12.9
Q ss_pred CchHHHHHhhcccHHHHHHHHhH
Q 002997 505 NGKDELILKLVPWVPELQNELNS 527 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e 527 (859)
+....-+..|..++.+++.++..
T Consensus 478 ~~~~~~~~~le~~l~~~~~~~e~ 500 (880)
T PRK02224 478 EELEAELEDLEEEVEEVEERLER 500 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666665554
No 44
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.03 E-value=0.0058 Score=69.78 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 624 AVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQ 666 (859)
Q Consensus 624 ~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lq 666 (859)
...+.-+....+..++.|+...+++...+..|+.++.++..+.
T Consensus 149 ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~ 191 (420)
T COG4942 149 AIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLL 191 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666666777777777777777664333
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.03 E-value=0.011 Score=78.18 Aligned_cols=89 Identities=22% Similarity=0.243 Sum_probs=36.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 597 STVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 597 a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
..++.+|..+.+++.+...+..+.......+..+.+.--++.+.-+.++..+..++..|..++.++..+..........+
T Consensus 943 ~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l 1022 (1930)
T KOG0161|consen 943 EQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQL 1022 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333344444444444444444444444444444444444
Q ss_pred HHHHHHHHH
Q 002997 677 NQLETRWRE 685 (859)
Q Consensus 677 eqlE~r~qe 685 (859)
..++..+.+
T Consensus 1023 ~~le~~le~ 1031 (1930)
T KOG0161|consen 1023 DDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHH
Confidence 444433333
No 46
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.02 E-value=4.4e-06 Score=66.15 Aligned_cols=41 Identities=27% Similarity=0.767 Sum_probs=34.6
Q ss_pred ccccccccC---cCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccc
Q 002997 804 ECVVCLAEE---KSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRS 846 (859)
Q Consensus 804 ~C~ICle~~---~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~ 846 (859)
.|+||+..+ ..+++++|||. ||..|+.... .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhc-CCCCCCcCCCC
Confidence 489999886 56889999999 9999999776 34578999985
No 47
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.4e-06 Score=95.93 Aligned_cols=54 Identities=39% Similarity=0.798 Sum_probs=46.1
Q ss_pred cCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEe
Q 002997 798 GLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRF 856 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~ 856 (859)
.......|.||.+.+.+++++||||+|.|-.|.. ....||+||..|...+++|+
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~-----~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSK-----HLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHHh-----hCCCCchhHHHHHHHHHHhc
Confidence 3456678999999999999999999988888877 34679999999999888875
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.01 E-value=0.00024 Score=86.28 Aligned_cols=141 Identities=23% Similarity=0.259 Sum_probs=98.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 599 vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
+.+||.++..+++++...+....|....+..+..-|+.+...|.. ++.+.+..+.++..+.+....-+..+..
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~q-------lr~ene~Lq~Kl~~L~~aRq~DKq~l~~ 492 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQ-------LRQENEQLQNKLQNLVQARQQDKQSLQQ 492 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888877777766666666655444444 4444445555566666666667777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002997 679 LETRWREERMARENLLAQAAAIRNQREQLEAAAKAE--------------EEMIKLEAEKEMSKLTEDIGKLESQLSLLK 744 (859)
Q Consensus 679 lE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e--------------~e~~r~eaE~elqrlkdeIkrLEeELeqLr 744 (859)
+|.++.+++..+..+.+|+.++++.+.+.++.+.+. +...+++.|.++++++.+++..++++..|+
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e 572 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELE 572 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888887776655544432 344666777888888877777777666666
Q ss_pred hc
Q 002997 745 YK 746 (859)
Q Consensus 745 ~k 746 (859)
..
T Consensus 573 ~~ 574 (697)
T PF09726_consen 573 SE 574 (697)
T ss_pred HH
Confidence 54
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.98 E-value=0.041 Score=64.99 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 002997 253 SKSNVPRPSKPTEPSKFSKPG 273 (859)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~ 273 (859)
|.|..+--|..+-+..|.|.+
T Consensus 16 Y~P~~~v~C~Ytlt~~~~ps~ 36 (546)
T PF07888_consen 16 YIPGTDVECHYTLTPGFHPSS 36 (546)
T ss_pred cCCCCCeEEEEecCCCCCCCC
Confidence 333344446666555555444
No 50
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.97 E-value=0.019 Score=71.49 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=22.5
Q ss_pred HhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 512 LKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEK 557 (859)
Q Consensus 512 ~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ek 557 (859)
..+.++|.+.=...-+-.|-|.+-+-+.+..+.....+++.++...
T Consensus 206 aT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~ 251 (1074)
T KOG0250|consen 206 ATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKL 251 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444444444433333
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.95 E-value=0.018 Score=74.69 Aligned_cols=53 Identities=26% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 694 LAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 694 laqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
+..++....+.++.......+.+..+.+.+...+.+++.+..+++.+..++.-
T Consensus 825 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~ 877 (1201)
T PF12128_consen 825 LRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDL 877 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344445555556666666666666666655555433
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.92 E-value=0.0067 Score=74.04 Aligned_cols=100 Identities=21% Similarity=0.345 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEM-- 717 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~-- 717 (859)
+.+.+|.++..|+.||..-.+.+..++.++.+++... ++.....+.|+..+...+.+-...|.....|-..
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~-------~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKl 618 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYE-------KESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKL 618 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444444444444444444444443322221 2234455666655554444444444333222111
Q ss_pred ----HHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 718 ----IKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 718 ----~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
.--++..+++..+..|..-++||..|+.+
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11144455555666677777888888776
No 53
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.022 Score=70.04 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=21.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 718 IKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 718 ~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
.+.+.+.++.+++.+-..+.++++.|..+
T Consensus 907 ~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 907 ERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred hHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 55567777777777777777777777766
No 54
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.87 E-value=6.2e-06 Score=65.37 Aligned_cols=36 Identities=31% Similarity=0.830 Sum_probs=22.1
Q ss_pred cccccccCcC----cEEeCCCchhhhHHhHHHHhhcC---CCCCC
Q 002997 805 CVVCLAEEKS----VVFLPCAHQVLCQKCNELHEKQG---MNDCP 842 (859)
Q Consensus 805 C~ICle~~~~----~VllpCgH~vfC~~Ci~~~~~~~---~~~CP 842 (859)
|+||.+ +.+ ++.++|||. ||..|++.+...+ ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcCCCCeeeCc
Confidence 899999 777 899999999 9999999887643 34677
No 55
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6.9e-06 Score=87.14 Aligned_cols=49 Identities=29% Similarity=0.716 Sum_probs=41.6
Q ss_pred CCccccccccccCcCcEEeCCCchhhhHHhHHH-HhhcCCCCCCCcccccc
Q 002997 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNEL-HEKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~-~~~~~~~~CP~CR~~i~ 849 (859)
..+.+|+||++.+..++-++|||. ||..|+-. |-......||.||+.+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 467899999999999999999999 99999997 54444456999999763
No 56
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5.3e-06 Score=87.12 Aligned_cols=48 Identities=35% Similarity=0.802 Sum_probs=42.6
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccc
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRS 846 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~ 846 (859)
..+.....|+||++.+..++++||||. ||..|+..++. ....||.||.
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred hhccccccChhhHHHhhcCccccccch-HhHHHHHHhcC-CCcCCcccCC
Confidence 455778899999999999999999999 99999998887 5578999993
No 57
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5.4e-06 Score=89.20 Aligned_cols=50 Identities=32% Similarity=0.717 Sum_probs=44.8
Q ss_pred ccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCce
Q 002997 802 ERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRI 852 (859)
Q Consensus 802 ~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i 852 (859)
..+|.||+.....+|.++|+|. ||..|++-.+..++..|++||.+|.+.|
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcch
Confidence 4579999999999999999999 9999999666667888999999998765
No 58
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.6e-06 Score=87.19 Aligned_cols=57 Identities=40% Similarity=0.894 Sum_probs=47.5
Q ss_pred ccccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEe
Q 002997 795 LMGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRF 856 (859)
Q Consensus 795 ~~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~ 856 (859)
.++.+.....|..|..+...++++||.|.++|..|.. ....||+|+.+....+.||+
T Consensus 151 ~~~~~~~~~~Cr~C~~~~~~VlllPCrHl~lC~~C~~-----~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 151 SVDNFKRMRSCRKCGEREATVLLLPCRHLCLCGICDE-----SLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred hhhhhhccccceecCcCCceEEeecccceEecccccc-----cCccCCCCcChhhceeeccC
Confidence 3444444445999999999999999999999999976 25789999999999888875
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.02 Score=68.54 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 587 NATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQ 666 (859)
Q Consensus 587 ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lq 666 (859)
....|-.+-+..|=++.+....++-+++...-+..+....++++.-+-......+..+.+++.....+|...+++|.+++
T Consensus 420 em~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 420 EMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666666666666655555555555555555445555555555555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002997 667 QEISKAENRHNQLETRW 683 (859)
Q Consensus 667 qELEeaK~~veqlE~r~ 683 (859)
+.|-.+--+-..|..++
T Consensus 500 ~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 500 EKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 44444333333333333
No 60
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.81 E-value=0.024 Score=68.92 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=10.5
Q ss_pred HHHhhcccHHHHHHHHhH
Q 002997 510 LILKLVPWVPELQNELNS 527 (859)
Q Consensus 510 ~i~~l~~~v~~L~~~~~e 527 (859)
++..+..++.+|+-++++
T Consensus 359 ~~~q~~~ql~~le~~~~e 376 (980)
T KOG0980|consen 359 RIEQYENQLLALEGELQE 376 (980)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555566666555555
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.78 E-value=0.043 Score=65.15 Aligned_cols=15 Identities=20% Similarity=0.011 Sum_probs=7.5
Q ss_pred chhhhhhcCCCcccc
Q 002997 364 TEKSYRTYGKGAFRS 378 (859)
Q Consensus 364 ~~k~~~~lG~kas~t 378 (859)
++..+-+|||+.++.
T Consensus 44 l~aI~~~l~G~~~~~ 58 (562)
T PHA02562 44 LEALTFALFGKPFRD 58 (562)
T ss_pred HHHHHHHHcCCCcCc
Confidence 334444566655544
No 62
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=1.7e-05 Score=86.89 Aligned_cols=48 Identities=29% Similarity=0.826 Sum_probs=36.7
Q ss_pred cccccccccc---CcCc--EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 802 ERECVVCLAE---EKSV--VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 802 ~~~C~ICle~---~~~~--VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
+..||+|... ..+. .+.+|||. ||..|+..++..+...||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 3579999983 2222 12279999 99999999887666789999998754
No 63
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.76 E-value=2.1e-05 Score=68.95 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=40.0
Q ss_pred CccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 801 RERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 801 ~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
....|+||.+...++|++||||. ||+.|+..|.......||.|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 46789999999999999999999 99999999998767899999998865
No 64
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.056 Score=63.46 Aligned_cols=38 Identities=39% Similarity=0.392 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q 002997 710 AAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 710 ~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k~ 747 (859)
.+-.+.++++++++.+...-+.++..|++++-.++...
T Consensus 471 ~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~ 508 (581)
T KOG0995|consen 471 KAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL 508 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346667777888888888888888888887776653
No 65
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.67 E-value=0.092 Score=64.84 Aligned_cols=164 Identities=15% Similarity=0.189 Sum_probs=75.7
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-HHH------HH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKA----LRHEKQEVEQCQKDKQ-ILE------EN 573 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~----LR~ekeelq~lkkekq-~le------e~ 573 (859)
|.||..|..+...+.+|+.++..-..=. .-....-.++.+.+...++ +..+.+.+......+. ++. +.
T Consensus 234 e~Kd~ki~~lEr~l~~le~Ei~~L~~~~-~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~ 312 (775)
T PF10174_consen 234 EEKDTKIASLERMLRDLEDEIYRLRSRG-ELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLET 312 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777776510000 0000001112222222222 2222333333211111 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 574 TVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLRE 653 (859)
Q Consensus 574 t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQe 653 (859)
......++..-|+.+..++.+.++....|-++++.++.+++.+..........+..+.+.-....-.+..+...+...+.
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234444555566666666666666666666666666666666555555555555554444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 002997 654 ELATEKQKVAVLQQEI 669 (859)
Q Consensus 654 EL~~EK~kL~~lqqEL 669 (859)
+|.....+|..+...+
T Consensus 393 ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 393 KINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444433333333
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.67 E-value=0.012 Score=69.37 Aligned_cols=92 Identities=24% Similarity=0.269 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002997 660 QKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQ 739 (859)
Q Consensus 660 ~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeE 739 (859)
+++.+++..+..++.++.+++.+-....+..+.|.-++..+++-.++..+ ..+.++.+++++.+.+-.+
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~-----------~kd~~i~~mReec~~l~~E 364 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALN-----------DKDAEIAKMREECQQLSVE 364 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhh-----------hHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555666677777777666666666665 4445555566666655555
Q ss_pred HHHHh---hcCcchHHHHhcccCCCCC
Q 002997 740 LSLLK---YKSDSSKIAALRGSVDGGF 763 (859)
Q Consensus 740 LeqLr---~k~~s~~iaaL~~~~d~~~ 763 (859)
++.|= ..++ ..|++.+...++..
T Consensus 365 lq~LlD~ki~Ld-~EI~~YRkLLegee 390 (546)
T KOG0977|consen 365 LQKLLDTKISLD-AEIAAYRKLLEGEE 390 (546)
T ss_pred HHHhhchHhHHH-hHHHHHHHHhcccc
Confidence 55542 2222 23454554444443
No 67
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.67 E-value=0.14 Score=57.64 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=53.4
Q ss_pred cccccccccccCCCCCchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 490 AGIPFDETLGRYIPQNGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQI 569 (859)
Q Consensus 490 ~~i~yde~l~~~v~~D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~ 569 (859)
.||-++++| -..---+.|+.+++..++.++.- |++.--++--.-.+--.||...|.+++.++...
T Consensus 61 ilf~~~~~l------r~gVfqlddi~~qlr~~rtel~~----a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~----- 125 (499)
T COG4372 61 ILFLLNRNL------RSGVFQLDDIRPQLRALRTELGT----AQGEKRAAETEREAARSELQKARQEREAVRQEL----- 125 (499)
T ss_pred HHHHhhhhH------HhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 456688888 44444577778888888888776 221111111111222334455555554444421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 570 LEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 570 lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
....+.+....+.|..+..|.......+..|.++...+.++...
T Consensus 126 --~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qs 169 (499)
T COG4372 126 --AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS 169 (499)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344444444445555555555555554444444444433
No 68
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.66 E-value=0.033 Score=72.97 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
....|+.++..+..++.....++..+..+++.+...+..++.+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3444455555555555554444444444444444444444333
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.63 E-value=0.018 Score=61.56 Aligned_cols=87 Identities=23% Similarity=0.261 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 645 EAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEK 724 (859)
Q Consensus 645 EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~ 724 (859)
.++...|+.++...++++..+..++.++...++.++..+...+.....+...+. .++...+.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~------------------e~~~~~e~ 149 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA------------------EAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
Confidence 344455555555555555555555555555554444433333332222222222 22224444
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcCcc
Q 002997 725 EMSKLTEDIGKLESQLSLLKYKSDS 749 (859)
Q Consensus 725 elqrlkdeIkrLEeELeqLr~k~~s 749 (859)
++..+.++...+.++...|..+.+.
T Consensus 150 e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 150 EVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 5555666666677777777766543
No 70
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=0.057 Score=70.83 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAK 622 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~e 622 (859)
+...++..|+....+++.....+..++.++..+..+++.+.....+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555444433
No 71
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.60 E-value=0.096 Score=68.18 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q 002997 718 IKLEAEKEMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 718 ~r~eaE~elqrlkdeIkrLEeELeqLr~k~ 747 (859)
.+.+++..++..+.++..++.++..|..-+
T Consensus 505 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 505 ERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666777777777777777776654
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.59 E-value=0.096 Score=69.00 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002997 535 KVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILE------ENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSV 608 (859)
Q Consensus 535 k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~le------e~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~ 608 (859)
++-.....+.+....++.|+.+++.++......++.. ......+.+++..+......++.++..+..++.++..
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeElee 387 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEA 387 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444555555555555333322211 1112244444555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 609 LKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQR----------VLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 609 lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~----------a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
++.+++..+.+..+....+.....+-......+..+++-. ..|+..+.....++.+++.++.+.+.++..
T Consensus 388 lEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~ 467 (1486)
T PRK04863 388 AEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSV 467 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444443333333333332222222222222211 235555555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002997 679 LETRWREERMARENLLAQ 696 (859)
Q Consensus 679 lE~r~qeekk~kEeLlaq 696 (859)
++..+.+..+....+...
T Consensus 468 lea~leql~~~~~~l~~~ 485 (1486)
T PRK04863 468 AQAAHSQFEQAYQLVRKI 485 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 655555555554444443
No 73
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.59 E-value=3.3e-05 Score=85.51 Aligned_cols=52 Identities=31% Similarity=0.694 Sum_probs=45.3
Q ss_pred cccccccccCcCcEEeCCCchhhhHHhHHHHhhcC-CCCCCCccccccCceEEE
Q 002997 803 RECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQG-MNDCPSCRSPIQQRIQVR 855 (859)
Q Consensus 803 ~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~-~~~CP~CR~~i~~~i~i~ 855 (859)
-.|.||-+..+++-+-||||. +|..|+..|.... ...||.||..|.++-.|.
T Consensus 370 eLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 379999999999999999999 9999999887544 578999999998875553
No 74
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.062 Score=64.54 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=18.0
Q ss_pred hhCCCC-hHHHHHHhhhcccccCCCCchhhHHHHHHHHhhh
Q 002997 114 SECGYS-EDDATKNIARHSIYCGGKDLVSNIVNDTLSALEK 153 (859)
Q Consensus 114 ~~~g~~-~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~~ 153 (859)
|..||- .+.+.-.+|.+|+= --|+--||.|..
T Consensus 27 p~~gfitg~qArnfflqS~LP--------~~VLaqIWALsD 59 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQSGLP--------TPVLAQIWALSD 59 (1118)
T ss_pred CCCCccchHhhhhhHHhcCCC--------hHHHHHHHHhhh
Confidence 444553 33355566666542 346777899843
No 75
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.16 Score=63.87 Aligned_cols=132 Identities=11% Similarity=0.128 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 002997 574 TVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSC----QEAFEREQKALKNAQSLEAQRV 649 (859)
Q Consensus 574 t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~l----qeI~ekErk~lerLka~EkQ~a 649 (859)
+.+.+++++.+..+++.++...+..+..|+......+.+++..+..+..--.-+ ..+.++=-....++.....++.
T Consensus 424 ~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 424 ARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELD 503 (1293)
T ss_pred HHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777766666666666555555555555444433222222 1112222223333444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 650 LLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQRE 705 (859)
Q Consensus 650 ~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e 705 (859)
..+.+|.............+++++..+......+.+.+.....+...+...+.+..
T Consensus 504 vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 504 VAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELK 559 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 66666666666667777777777777777777777777777777666665333333
No 76
>PRK03918 chromosome segregation protein; Provisional
Probab=97.57 E-value=0.19 Score=62.99 Aligned_cols=12 Identities=0% Similarity=0.016 Sum_probs=7.2
Q ss_pred CCCCCchhhhcc
Q 002997 453 ALPVPNTELVAS 464 (859)
Q Consensus 453 ~Lsqd~ar~fLs 464 (859)
.++|-....|+.
T Consensus 131 ~~~Qg~~~~~~~ 142 (880)
T PRK03918 131 YIRQGEIDAILE 142 (880)
T ss_pred EEeccchHHHhc
Confidence 356766666654
No 77
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.55 E-value=0.019 Score=70.78 Aligned_cols=185 Identities=18% Similarity=0.240 Sum_probs=86.9
Q ss_pred cccccCCCCCchHHHH-HhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 496 ETLGRYIPQNGKDELI-LKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENT 574 (859)
Q Consensus 496 e~l~~~v~~D~k~e~i-~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t 574 (859)
++|.+|.|||+-.|-. +.-++.+.+.++-.. +..|.....+|..||.+-+.+++-....
T Consensus 141 ~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig-------------~~~ll~~h~eL~~lr~~e~~Le~~~~~~------- 200 (1072)
T KOG0979|consen 141 DNLCQFLPQDKVKEFARLSPIELLVETEKAIG-------------AEELLQYHIELMDLREDEKSLEDKLTTK------- 200 (1072)
T ss_pred CchhhhccHHHHHHHHcCChHHHHHHHHHhcC-------------chhhHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 8899999999988843 233333333333222 2335555555666665555544421111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 575 VKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEM-----EAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRV 649 (859)
Q Consensus 575 ~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEm-----EaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a 649 (859)
...|..+++++++....|++....-+.+ ..+.-++..+ +.-..++.+......++.+..+++.+..+.++..+.
T Consensus 201 ~~~l~~L~~~~~~l~kdVE~~rer~~~~-~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~e 279 (1072)
T KOG0979|consen 201 TEKLNRLEDEIDKLEKDVERVRERERKK-SKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKE 279 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 1133344444444444444433332222 1111111111 111222333333334444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 650 LLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIR 701 (859)
Q Consensus 650 ~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ek 701 (859)
.|+.+......++..+..++.++...+.+.-..+.+..+..+++..+.+..+
T Consensus 280 eLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk 331 (1072)
T KOG0979|consen 280 ELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLK 331 (1072)
T ss_pred hHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555566666555555555555555555555555544333
No 78
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.55 E-value=0.088 Score=69.35 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 576 KRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREEL 655 (859)
Q Consensus 576 KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL 655 (859)
+++.+....|.+++..+.+....+..++..+..++.+.+.++.......+ ...+..+-......+..+..++...++.+
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-ALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666666666666544333221 11222222333334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 656 ATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLL 694 (859)
Q Consensus 656 ~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLl 694 (859)
+..+.++..++.+++.++.++..++.++.+.......+.
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ 410 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQ 410 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333333333333
No 79
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.077 Score=65.55 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=105.7
Q ss_pred HHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHH-------------HHH
Q 002997 510 LILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHE-KQEVEQ-CQKDKQILE-------------ENT 574 (859)
Q Consensus 510 ~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~e-keelq~-lkkekq~le-------------e~t 574 (859)
-+-.+.+.|.+++.++++ ++-+..+.++....|.+.+...+.-|.. +.+++. ++..++.++ +..
T Consensus 742 ~~~~~~e~v~e~~~~Ike-~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l 820 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKE-KERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERL 820 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888777 7777777777777766666555543321 111111 111111111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 002997 575 VKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRV----- 649 (859)
Q Consensus 575 ~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a----- 649 (859)
.-.+++|+..++....++...+..+..|+.++..+++.+..++....+..+.+.....+.+..-.++........
T Consensus 821 ~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e 900 (1174)
T KOG0933|consen 821 QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSE 900 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Confidence 227788899999999999999999999999999999999998888888888887777776666555533333222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 650 --LLREELATEKQKVAVLQQEISKAENRHNQLET 681 (859)
Q Consensus 650 --~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~ 681 (859)
..+-++.....++..+.++-..+...++.+..
T Consensus 901 ~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~ 934 (1174)
T KOG0933|consen 901 KSDGELERKKLEHEVTKLESEKANARKEVEKLLK 934 (1174)
T ss_pred hhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 22333333344445555555555555555443
No 80
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.51 E-value=0.13 Score=64.28 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 553 LRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFE 632 (859)
Q Consensus 553 LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~e 632 (859)
+++-.++.+......+...+-+...+...++-|.++++....++..+......+.++...||+.|.++...-.+-..+.+
T Consensus 1568 V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~ 1647 (1758)
T KOG0994|consen 1568 VVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEK 1647 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44444444443333333333344455555666666666666666666666666666677777776666555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 633 REQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAK 712 (859)
Q Consensus 633 kErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k 712 (859)
.---+..+....+.....||...+.-.+-++...+....++++.++ .+.+.+.|+.++. ....++.+
T Consensus 1648 ~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~-------L~~eA~~Ll~~a~---~kl~~l~d--- 1714 (1758)
T KOG0994|consen 1648 TAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQ-------LRTEAEKLLGQAN---EKLDRLKD--- 1714 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHH---
Confidence 3333444444444444444444444333333333333333333332 2233333333332 12222222
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 713 AEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 713 ~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
++...+.-+..+..+..+|..|+++++++...
T Consensus 1715 --Le~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1715 --LELEYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred --HHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11122233445556667777888777776543
No 81
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.18 Score=63.39 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl 618 (859)
++.+++.+-.+...++.+..+.+.+|+.++...+.+...++.
T Consensus 392 ~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~ 433 (1293)
T KOG0996|consen 392 KFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEK 433 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 455555555555666666666666666666666666555543
No 82
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.50 E-value=0.5 Score=58.04 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 659 KQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAA 699 (859)
Q Consensus 659 K~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ 699 (859)
..++..+..|++++++..+.+..++.+.+....+++.|++.
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555556666666666666666654
No 83
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.49 E-value=0.1 Score=62.64 Aligned_cols=182 Identities=17% Similarity=0.213 Sum_probs=89.0
Q ss_pred HHHhhcccHHHHHHHHhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHH------
Q 002997 510 LILKLVPWVPELQNELNSWTEWANQKV-MQAARRLSKDQAELKALRHEKQEV----EQCQK----DKQILEENT------ 574 (859)
Q Consensus 510 ~i~~l~~~v~~L~~~~~e~~~wa~~k~-~qaA~rL~ke~~eLk~LR~ekeel----q~lkk----ekq~lee~t------ 574 (859)
-+..|..++..++.++....+|...== .+|..-|.+....+..|+..++.+ ..+++ ...+|..-.
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~ 245 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEE 245 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 456788888999999998888865422 222222223333333333333333 11111 111111111
Q ss_pred ---------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 575 ---------VKRLSEMEFALTNATA-----QVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKN 640 (859)
Q Consensus 575 ---------~KrLsemE~aL~ka~~-----Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~ler 640 (859)
..++..+.++|..+.. +++.+.+.+..++.+|+.+-..++...... ..+.+.-.++...
T Consensus 246 gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~-------~~vek~~~~l~~~ 318 (569)
T PRK04778 246 GYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKAR-------KYVEKNSDTLPDF 318 (569)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHH
Confidence 1244444444444222 344555555555555555555555433322 3334444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQK----------VAVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~k----------L~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
+..++++...+..+|...++. ...+..+++.+...+..+...+.........+..+.+
T Consensus 319 l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le 386 (569)
T PRK04778 319 LEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE 386 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555566666666666555555 5566666666666666555554444433333333333
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.49 E-value=0.094 Score=62.30 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=2.3
Q ss_pred chhhhh
Q 002997 310 VSMAES 315 (859)
Q Consensus 310 ~~~~~~ 315 (859)
+++.+.
T Consensus 41 Stll~a 46 (562)
T PHA02562 41 STMLEA 46 (562)
T ss_pred HHHHHH
Confidence 333444
No 85
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.49 E-value=0.21 Score=59.46 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQ 660 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~ 660 (859)
+...|..+..+|+.++..+.....+...++..++..+.........+.++.+++......+..++.++..++.+|...+.
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 34445566666666666666666666666666666666666666666666666666666666666666666666655444
Q ss_pred HH
Q 002997 661 KV 662 (859)
Q Consensus 661 kL 662 (859)
.-
T Consensus 359 ~e 360 (522)
T PF05701_consen 359 EE 360 (522)
T ss_pred hh
Confidence 33
No 86
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.48 E-value=0.14 Score=67.53 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=25.5
Q ss_pred cccccCCCCCchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 496 ETLGRYIPQNGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQ 562 (859)
Q Consensus 496 e~l~~~v~~D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~ 562 (859)
+.|..|+|+..-+ .|..+.+.+..|+.--.. ...+.+.+..|+.+...-+.+.+
T Consensus 208 ~~l~~~l~~l~~~-~i~~l~e~~~~~~~~~~~------------le~l~~~~~~l~~i~~~y~~y~~ 261 (1353)
T TIGR02680 208 DALTEALPPLDDD-ELTDVADALEQLDEYRDE------------LERLEALERALRNFLQRYRRYAR 261 (1353)
T ss_pred HHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666663333 355554444444433333 44444444445554444444444
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.46 E-value=0.16 Score=64.15 Aligned_cols=30 Identities=27% Similarity=0.114 Sum_probs=18.5
Q ss_pred CCCCCCchhHHHHHHHHHHhHHHHHHHHHH
Q 002997 82 ESGEWDDPIVCALGELLSSGLNTLFRNVIK 111 (859)
Q Consensus 82 ~~~~w~~~~~~~L~~~Ll~~i~~~y~~Ai~ 111 (859)
+...|-.|....++++=|+.=+.-.++.|-
T Consensus 55 ~fl~~~kp~v~~v~~lrl~~~DfeilKvIG 84 (1317)
T KOG0612|consen 55 EFLNRYKPIVKKVKELRLKAEDFEILKVIG 84 (1317)
T ss_pred HHHHHhHHHHHHHHHHhCCHHhhHHHHHhc
Confidence 346677777777777666666655555543
No 88
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.45 E-value=0.11 Score=57.49 Aligned_cols=145 Identities=20% Similarity=0.226 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEIS 670 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELE 670 (859)
+++..+..++.||.|+..++.|....+.........-+.++ .++.+.+.....+++.|.++|+.......+.+.++.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv---~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLV---LDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHH---HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888999998888876655433332222222221 235567888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 671 KAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 671 eaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
.+..++..++.+.++-....+++...+...+........ +...++. .......-+...++++..+|.+
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~a----EL~elqd----kY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQA----ELQELQD----KYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999998888755444333322 1111111 1111222355567777776654
No 89
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.45 E-value=0.21 Score=54.98 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=68.4
Q ss_pred HHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEAAN------LRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKA 672 (859)
Q Consensus 599 vr~LE~E~a~lraEmEaAK------l~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEea 672 (859)
-+++-..+..++.+++.++ ....+..+.+..+..+-+..+++++.+-.+.....++|...-+++..++.+.+++
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~ 212 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADEL 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777765 3445555666777777778888888888888888888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 673 ENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 673 K~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
...+..+...+.+.......++..+.
T Consensus 213 he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 213 HEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77777666666665555555554444
No 90
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.44 E-value=0.3 Score=59.18 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 716 EMIKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 716 e~~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
...++..+.+++++......++++++.|+..
T Consensus 371 ~e~k~nve~elqsL~~l~aerqeQidelKn~ 401 (1265)
T KOG0976|consen 371 QEKKENVEEELQSLLELQAERQEQIDELKNH 401 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556666766666777777776654
No 91
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.40 E-value=0.14 Score=58.82 Aligned_cols=65 Identities=25% Similarity=0.217 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q 002997 683 WREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 683 ~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k~ 747 (859)
+++....++.+.+++..+....+-....+-.+.++.++..+++....+.++..||.++.+|+...
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s 549 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLS 549 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 55666677777777777677777667777788999999999999999999999999999998774
No 92
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.40 E-value=0.36 Score=55.58 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 657 TEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLE 708 (859)
Q Consensus 657 ~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~e 708 (859)
+...+...+.+-+++.++.+.+++..+....+..++|.......+.+...++
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444555555555555555566666666666665555544444444333
No 93
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.39 E-value=1.9e-05 Score=67.33 Aligned_cols=47 Identities=28% Similarity=0.665 Sum_probs=26.4
Q ss_pred cCCCccccccccccCcCcE-EeCCCchhhhHHhHHHHhhcCCCCCCCccccc
Q 002997 798 GLKRERECVVCLAEEKSVV-FLPCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~V-llpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
.++..+.|++|.+..+.+| +..|.|. ||..|+..... ..||.|+.|-
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~---~~CPvC~~Pa 50 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIG---SECPVCHTPA 50 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS---B-TTTGGGGTT---TB-SSS--B-
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcC---CCCCCcCChH
Confidence 3456689999999999997 4699999 99999985432 4699999985
No 94
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.38 E-value=0.33 Score=57.99 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 648 RVLLREELATEKQKVAVLQQEISKAENRHNQLETRWR--EERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKE 725 (859)
Q Consensus 648 ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~q--eekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~e 725 (859)
...++..++....++..++.-++.++..+. .+.++. +.+++-+.+-.|++..+....+.+..+.+++.+.|.+.+.-
T Consensus 539 ~~~sr~~~~~le~~~~a~qat~d~a~~Dlq-k~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~L 617 (961)
T KOG4673|consen 539 YSNSRALAAALEAQALAEQATNDEARSDLQ-KENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDL 617 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556666666666665331 223333 34455556667777778888888888888999999988888
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 002997 726 MSKLTEDIGKLESQLSLL 743 (859)
Q Consensus 726 lqrlkdeIkrLEeELeqL 743 (859)
.+|+++.-.|.++-+.++
T Consensus 618 qrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 618 QRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 888888777776554444
No 95
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.37 E-value=0.26 Score=58.68 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=6.8
Q ss_pred HHHhhcccHHHHHHHHh
Q 002997 510 LILKLVPWVPELQNELN 526 (859)
Q Consensus 510 ~i~~l~~~v~~L~~~~~ 526 (859)
.+-.|...|..|+..+.
T Consensus 173 kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 173 KVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 96
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.36 E-value=0.28 Score=54.01 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 574 TVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLRE 653 (859)
Q Consensus 574 t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQe 653 (859)
..+++.++...|..+..++ ..+..+..+-+++..++.+......+..+.....++++.+=.++......+.+....+.+
T Consensus 136 lvq~I~~L~k~le~~~k~~-e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he 214 (294)
T COG1340 136 LVQKIKELRKELEDAKKAL-EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347777777787776655 445567777788888888888877778877777788888777777777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 654 ELATEKQKVAVLQQEISKAENRHNQLETRWR 684 (859)
Q Consensus 654 EL~~EK~kL~~lqqELEeaK~~veqlE~r~q 684 (859)
++.....++..+..++..++..+..++..+.
T Consensus 215 ~~ve~~~~~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 215 EFVELSKKIDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777777777777777766655543
No 97
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=2.7e-05 Score=85.54 Aligned_cols=55 Identities=25% Similarity=0.598 Sum_probs=45.2
Q ss_pred ccCCCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCccccccCce
Q 002997 797 GGLKRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRI 852 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i 852 (859)
..+..+..|+||++..+....+ -|.|. ||..||......+...||-||+.....-
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 4667788999999987666555 69999 9999999777777789999999876543
No 98
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.21 Score=54.24 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 628 QEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 628 qeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
..|...++++++..+.-++.+...+..+....+.|..+..+++.....+
T Consensus 140 ~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L 188 (265)
T COG3883 140 SVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSL 188 (265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999998888888888888888887777777776666554444
No 99
>PRK01156 chromosome segregation protein; Provisional
Probab=97.31 E-value=0.59 Score=59.03 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=6.8
Q ss_pred cccccccccc
Q 002997 802 ERECVVCLAE 811 (859)
Q Consensus 802 ~~~C~ICle~ 811 (859)
...||+|.+.
T Consensus 452 ~~~Cp~c~~~ 461 (895)
T PRK01156 452 QSVCPVCGTT 461 (895)
T ss_pred CCCCCCCCCc
Confidence 4568888765
No 100
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.29 E-value=0.06 Score=53.55 Aligned_cols=110 Identities=17% Similarity=0.255 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~ 656 (859)
++..++........+|......+..++.+++.+...+..++....+..... ....++.+.+..|+++|.
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-----------~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-----------SNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------HhHHHHHhhHHHHHHHHH
Confidence 333444444444444444444455555555555555555544444443321 112255666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 657 TEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQA 697 (859)
Q Consensus 657 ~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqa 697 (859)
....+|......|.++.....+++.+.+........|...+
T Consensus 91 ~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 91 EAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666666666666666555555444444444443333
No 101
>PRK09039 hypothetical protein; Validated
Probab=97.29 E-value=0.051 Score=61.38 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002997 552 ALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEME 605 (859)
Q Consensus 552 ~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E 605 (859)
.+..+...++.+..+.-++....+.+...++..|..+..+++.+++...+|+..
T Consensus 50 ~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 50 GKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333334455556666666666665555555555443
No 102
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.27 E-value=0.26 Score=58.45 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 585 LTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQ 647 (859)
Q Consensus 585 L~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ 647 (859)
|..+-.-|+.+.....+++.++..++.+++.++.++.+..+.+....++-+..+.++-.++.+
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe 156 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAE 156 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhH
Confidence 444444444445555555555555555555555555555555444444444334444444333
No 103
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=97.26 E-value=0.16 Score=54.25 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 590 AQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQ 647 (859)
Q Consensus 590 ~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ 647 (859)
.|++.++..++.|+.++..++-|.++.|.+.+.+..+.-+....-.+-+...++...|
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeq 109 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQ 109 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677888888888888888888777766665544333333333333333333
No 104
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.26 E-value=0.11 Score=58.33 Aligned_cols=129 Identities=21% Similarity=0.222 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 553 LRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFE 632 (859)
Q Consensus 553 LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~e 632 (859)
|+.++.=++...+-.+.+.+.....+..|..-...+...++.++..+..+....+.++.++...+....+ +..
T Consensus 133 l~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-------~~~ 205 (325)
T PF08317_consen 133 LEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-------IES 205 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhh
Confidence 3334444444444555555555566666666666666666666666777766666666666554433332 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 633 REQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 633 kErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
. -...+..+..++..+..+|+..++++.+++.+++ .++..+.+....+.++.+++.
T Consensus 206 ~---D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~-------~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 206 C---DQEELEALRQELAEQKEEIEAKKKELAELQEELE-------ELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred c---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 1 1133444444444444444444444444444444 444444444555555555554
No 105
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.23 E-value=0.58 Score=52.83 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhh
Q 002997 721 EAEKEMSKLTEDIGKLESQLSLLKY 745 (859)
Q Consensus 721 eaE~elqrlkdeIkrLEeELeqLr~ 745 (859)
+.|..+++++.+...||+++.+|++
T Consensus 256 ~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 256 ERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666553
No 106
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.31 Score=60.30 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002997 580 EMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVS 626 (859)
Q Consensus 580 emE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~ 626 (859)
.+-.++.++...++.....+.+|+..+..++.+.|.++.+..+..+.
T Consensus 255 ~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~ 301 (1200)
T KOG0964|consen 255 QYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK 301 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666667777776666666666665554444433
No 107
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.22 E-value=0.52 Score=52.03 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAAN 617 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAK 617 (859)
....++..|..+...++.+....-.|+.++..++.+++-.+
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554443
No 108
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.21 E-value=0.24 Score=59.83 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 598 TVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHN 677 (859)
Q Consensus 598 ~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~ve 677 (859)
++.++..+++.++-.+-++++++..-...+.++.++.-.+++....+...+...++++.......+++++++++.|..+-
T Consensus 324 enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if 403 (1265)
T KOG0976|consen 324 ENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF 403 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555556666666666666555555555555554444444444444333333333333333333444444444444443
Q ss_pred HH
Q 002997 678 QL 679 (859)
Q Consensus 678 ql 679 (859)
.+
T Consensus 404 ~~ 405 (1265)
T KOG0976|consen 404 RL 405 (1265)
T ss_pred hh
Confidence 33
No 109
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.19 E-value=0.66 Score=57.56 Aligned_cols=20 Identities=5% Similarity=-0.198 Sum_probs=12.0
Q ss_pred CCCCchhHHHHHHHHHHhHH
Q 002997 84 GEWDDPIVCALGELLSSGLN 103 (859)
Q Consensus 84 ~~w~~~~~~~L~~~Ll~~i~ 103 (859)
..|-....++|+..-.++-|
T Consensus 52 ~a~l~~~k~qlr~~q~e~q~ 71 (775)
T PF10174_consen 52 AAELSRLKEQLRVTQEENQK 71 (775)
T ss_pred HHHHHhHHHHHHHHHhhHHH
Confidence 44556666677666665553
No 110
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.87 Score=53.94 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKL 720 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~ 720 (859)
+...+..+..||+.+......+.++++.+....-++..++.+++..++..++.......+-..+++.....+........
T Consensus 434 ~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~ 513 (581)
T KOG0995|consen 434 LHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMK 513 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555556666666666666666666655555554444433322222222222222222222333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 721 EAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 721 eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
+++..++..+.++.++-.....-+.+
T Consensus 514 ~a~~~v~s~e~el~~~~~~~~eer~k 539 (581)
T KOG0995|consen 514 EAEELVKSIELELDRMVATGEEERQK 539 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 111
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.18 E-value=0.26 Score=59.18 Aligned_cols=187 Identities=18% Similarity=0.226 Sum_probs=89.2
Q ss_pred HHHhhcccHHHHHHHHhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH-----
Q 002997 510 LILKLVPWVPELQNELNSWTEWANQ-KVMQAARRLSKDQAELKALRHEKQEVEQCQK--------DKQILEENTV----- 575 (859)
Q Consensus 510 ~i~~l~~~v~~L~~~~~e~~~wa~~-k~~qaA~rL~ke~~eLk~LR~ekeelq~lkk--------ekq~lee~t~----- 575 (859)
-+..|..++..++.++.+..+|... --.+|..-|.+....+..|+..++.+=.+-. ...++..-..
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~ 241 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEE 241 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHC
Confidence 4567788888888888888888766 3333333344444444555544443333111 1111221111
Q ss_pred ----------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 576 ----------KRLSEMEFALTNATAQV-----ERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKN 640 (859)
Q Consensus 576 ----------KrLsemE~aL~ka~~Ql-----era~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~ler 640 (859)
+++..+++++..+...| +.+...+..+..+|+.+=.-||. -......+.+.-..+...
T Consensus 242 gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~-------E~~Ak~~V~~~~~~l~~~ 314 (560)
T PF06160_consen 242 GYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEK-------EVEAKKYVEKNLKELYEY 314 (560)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHH
Confidence 13444444444433333 23333333333333333332222 222234444555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKV----------AVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQ 703 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL----------~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE 703 (859)
+..+.++...+..++...+..- ..+..++.........+...+.+.....-.+...++.....
T Consensus 315 l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~ 387 (560)
T PF06160_consen 315 LEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQ 387 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence 6666666666666655544332 55555666666666666555555444444444444333333
No 112
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.78 Score=55.92 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~ 656 (859)
.+.+.+.+--++...-..++..+..|..+...+..++-..+.........+..+.++++.+........+++..++..|+
T Consensus 476 el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le 555 (698)
T KOG0978|consen 476 ELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLE 555 (698)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHH
Confidence 56666666677777888999999999999999999999888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 657 TEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEA 709 (859)
Q Consensus 657 ~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee 709 (859)
..+.....+.+.++.++..++..++++.+......++...++.+...+.++++
T Consensus 556 ~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE 608 (698)
T KOG0978|consen 556 MLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE 608 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888887777755555444443
No 113
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.18 E-value=0.12 Score=58.72 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002997 585 LTNATAQVERSSSTVHTLEMEHSVLKKEMEAA 616 (859)
Q Consensus 585 L~ka~~Qlera~a~vr~LE~E~a~lraEmEaA 616 (859)
+.....+++..++.+..++.++..++.+++.+
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~ 170 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQAL 170 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444333
No 114
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.17 E-value=0.00032 Score=61.67 Aligned_cols=40 Identities=35% Similarity=0.786 Sum_probs=31.7
Q ss_pred ccccccccC-------------cCcEEeCCCchhhhHHhHHHHhhcCCCCCCCcc
Q 002997 804 ECVVCLAEE-------------KSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCR 845 (859)
Q Consensus 804 ~C~ICle~~-------------~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR 845 (859)
.|.||++.+ ..+++.+|||. |...|+..|.... ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTS-SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcC-CcCCCCC
Confidence 499999876 23456699999 9999999998744 6999998
No 115
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.16 E-value=0.43 Score=49.92 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=9.4
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 002997 725 EMSKLTEDIGKLESQLSL 742 (859)
Q Consensus 725 elqrlkdeIkrLEeELeq 742 (859)
+.+.+..+|..|...|..
T Consensus 172 ~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 116
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.14 E-value=0.77 Score=55.05 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=13.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcC
Q 002997 725 EMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 725 elqrlkdeIkrLEeELeqLr~k~ 747 (859)
+++.+++++.+++.++.++++..
T Consensus 740 E~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 740 EADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666554
No 117
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00021 Score=78.34 Aligned_cols=48 Identities=27% Similarity=0.697 Sum_probs=42.3
Q ss_pred CccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 801 RERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 801 ~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
++..|+||+-.+.++|+.||+|. -|+.||.++.-+ ...|-.|++.+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN-~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMN-CKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCc-hHHHHHHHHHhc-CCeeeEecceeee
Confidence 56789999999999999999999 999999988753 4789999987764
No 118
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.12 E-value=0.53 Score=56.68 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 576 KRLSEMEFALTNATAQVERSSST----------VHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLE 645 (859)
Q Consensus 576 KrLsemE~aL~ka~~Qlera~a~----------vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~E 645 (859)
+.+..+......+..++++.+.. ++.++.++..+..+++.......+....+.++...-.++.+++..++
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666 77777777777777777666666666667777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
++...+++.|...+..-...+..+...+..+..+...
T Consensus 397 ~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~ 433 (569)
T PRK04778 397 KEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRY 433 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766666666666666666655555433
No 119
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.66 Score=54.38 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 572 ENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLL 651 (859)
Q Consensus 572 e~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~L 651 (859)
+....++-+|++.|.+....+...++...+++.....+...-.+.+..--.....+.+..-+|..++..+..+|.+-.-|
T Consensus 103 ~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsL 182 (772)
T KOG0999|consen 103 EYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISL 182 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 33444888999999999999998888888888888887777777666666777788888888888999898888887777
Q ss_pred HHHHHHHHH
Q 002997 652 REELATEKQ 660 (859)
Q Consensus 652 QeEL~~EK~ 660 (859)
|......+.
T Consensus 183 QKqVs~LR~ 191 (772)
T KOG0999|consen 183 QKQVSNLRQ 191 (772)
T ss_pred HHHHHHHhh
Confidence 777666543
No 120
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.11 E-value=0.53 Score=59.63 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANL---RAAKSAVSCQEAFEREQKALKNAQSLE 645 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl---~~~es~k~lqeI~ekErk~lerLka~E 645 (859)
.+.......+++....+.+.+..+.|++.+..++++.+.++. ...+....++.+.+.-++..+++..++
T Consensus 523 ele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le 594 (1317)
T KOG0612|consen 523 ELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLE 594 (1317)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHH
Confidence 444444444455555556666666666666666666665432 233333444444443334444444443
No 121
>PRK09039 hypothetical protein; Validated
Probab=97.10 E-value=0.092 Score=59.34 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=5.3
Q ss_pred ccCceEEEec
Q 002997 848 IQQRIQVRFA 857 (859)
Q Consensus 848 i~~~i~i~~~ 857 (859)
...+|.|++.
T Consensus 332 ~NRRVeI~l~ 341 (343)
T PRK09039 332 RNRRIELKLT 341 (343)
T ss_pred hcCCEEEEEe
Confidence 3455666553
No 122
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.07 E-value=0.36 Score=57.46 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=102.7
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTE----WANQKV-MQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVK--- 576 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~----wa~~k~-~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~K--- 576 (859)
..++.-+..|.+++..++..+....+ --.++. .+-+.+...-+++...+..+.+.++.-....+...+.+.+
T Consensus 141 k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~ 220 (629)
T KOG0963|consen 141 KTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELF 220 (629)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45566788888888888888777555 111121 1223333333333333333333333322222111222222
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 002997 577 --------RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKS-----AVSCQEAFEREQKALKNAQS 643 (859)
Q Consensus 577 --------rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es-----~k~lqeI~ekErk~lerLka 643 (859)
.+......+.-+...++.|+..|..++.|.+.++.++..+.-..... .+.-.-+-.+|+.+..-...
T Consensus 221 ~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~d 300 (629)
T KOG0963|consen 221 DLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSND 300 (629)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHH
Confidence 34444445666777888999999999999999988888765433222 22223333466666665666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 644 LEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWR 684 (859)
Q Consensus 644 ~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~q 684 (859)
++.-.+.+.++++..+..|..+.+++......+++++.+++
T Consensus 301 i~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 301 IERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666777777777777777777777776666665544
No 123
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.07 E-value=0.00021 Score=72.96 Aligned_cols=51 Identities=25% Similarity=0.579 Sum_probs=43.2
Q ss_pred ccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEE
Q 002997 802 ERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQV 854 (859)
Q Consensus 802 ~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i 854 (859)
...|.||...+..+|.+.|||. ||..|+...+..+ ..|-+|.+....++.|
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg-~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKG-DECGVCGKATYGRFWV 246 (259)
T ss_pred ceeehhchhhccchhhhhcchh-HHHHHHHHHhccC-CcceecchhhccceeH
Confidence 3589999999999999999999 9999999776643 7899999987665543
No 124
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0003 Score=77.66 Aligned_cols=47 Identities=32% Similarity=0.766 Sum_probs=39.3
Q ss_pred CCcccccccccc-Cc------------CcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccc
Q 002997 800 KRERECVVCLAE-EK------------SVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 800 ~~~~~C~ICle~-~~------------~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
..++.|.||++. .. .+.-+||||. +=..|.+.|.. ++.+||+||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~E-RqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLE-RQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHH-hccCCCcccCcc
Confidence 567899999997 22 2367899999 99999999887 678999999994
No 125
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.57 Score=58.13 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 576 KRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEA 646 (859)
Q Consensus 576 KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~Ek 646 (859)
++...++-.+..++.|++.-..........+..+..+++.-+.+..+..-....+..++.....+|..++.
T Consensus 300 k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 300 KKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555566666666544444333334444444444444444444444444444444444444444433
No 126
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.02 E-value=0.15 Score=62.32 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 563 CQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQ 642 (859)
Q Consensus 563 lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLk 642 (859)
|.++-...+.....+|.+++..|..+...+.++.+++.+|...+..++.+.+..+......+..+.+...+|..++..+.
T Consensus 21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dys 100 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 66666777778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002997 643 SLEAQRVLLREELATEKQK 661 (859)
Q Consensus 643 a~EkQ~a~LQeEL~~EK~k 661 (859)
.+|.+...||..+...|..
T Consensus 101 elEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999988888887776644
No 127
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.00 E-value=0.73 Score=52.92 Aligned_cols=30 Identities=7% Similarity=0.206 Sum_probs=21.4
Q ss_pred CCCCCCCcccccccc------cccccccCCCCCchH
Q 002997 479 TSPSPKLPEYYAGIP------FDETLGRYIPQNGKD 508 (859)
Q Consensus 479 ~~~stp~~ky~~~i~------yde~l~~~v~~D~k~ 508 (859)
..+.+|+++|--... |++....|.|+|.-+
T Consensus 149 ~~~~~~~~~~a~d~~~s~~~q~~d~~e~~~~kdSQl 184 (554)
T KOG4677|consen 149 ALSDTPAKSYAPDLGRSKGEQYRDYSEDWSPKDSQL 184 (554)
T ss_pred cccccchhhcccccccchhhhHhhHhhhcccchhhH
Confidence 344567777765554 888888899999866
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.99 E-value=0.34 Score=58.54 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=12.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcC
Q 002997 725 EMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 725 elqrlkdeIkrLEeELeqLr~k~ 747 (859)
++.++-.|.+.++++|..+..+.
T Consensus 506 eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 506 EIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666665555553
No 129
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.46 Score=59.47 Aligned_cols=25 Identities=20% Similarity=0.431 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 528 WTEWANQKVMQAARRLSKDQAELKA 552 (859)
Q Consensus 528 ~~~wa~~k~~qaA~rL~ke~~eLk~ 552 (859)
|.|=.-+.+|+.-.+|.+++.++..
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~ 673 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQK 673 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666666666655
No 130
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00035 Score=83.01 Aligned_cols=47 Identities=30% Similarity=0.701 Sum_probs=41.2
Q ss_pred CCccccccccccCcC-----cEEeCCCchhhhHHhHHHHhhcCCCCCCCccccc
Q 002997 800 KRERECVVCLAEEKS-----VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 800 ~~~~~C~ICle~~~~-----~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
.....|+||.+.... +..+||+|. ||..|+..|.. +...||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~e-r~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFE-RQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHH-HhCcCCcchhhh
Confidence 456789999999777 789999999 99999999987 468999999944
No 131
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.92 E-value=0.14 Score=61.73 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
+...+..++.|+.-+..-.+++..|.++-+..+.-+
T Consensus 389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL 424 (594)
T PF05667_consen 389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPL 424 (594)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444456666666666666666666666655555443
No 132
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.88 E-value=1 Score=49.70 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLR 619 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~ 619 (859)
.+..+...+..+..+++...+....++.++..++.+++.+...
T Consensus 76 e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~ 118 (312)
T PF00038_consen 76 EIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA 118 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 3444444455555555555555666666666666665554433
No 133
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.77 Score=57.64 Aligned_cols=114 Identities=17% Similarity=0.238 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH------------
Q 002997 575 VKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEA----FEREQKAL------------ 638 (859)
Q Consensus 575 ~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI----~ekErk~l------------ 638 (859)
.-+|-..+..+.++...|.+.++++..++..++....++++-+.+.....++++.+ .+++.++-
T Consensus 219 L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~ 298 (1141)
T KOG0018|consen 219 LWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENA 298 (1141)
T ss_pred HHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhh
Confidence 33777778888888888888888888887777777777776664444444444222 22222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 639 ----KNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERM 688 (859)
Q Consensus 639 ----erLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk 688 (859)
.++...++.+...+......+..+.+++.++.......+..+..+++..+
T Consensus 299 ~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 299 SHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555555555555555555555554455544444443
No 134
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.88 E-value=0.88 Score=54.33 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 580 EMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAA----KSAVSCQEAFEREQKALKNAQSLEAQRVLLREEL 655 (859)
Q Consensus 580 emE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~----es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL 655 (859)
.+.+...+...|+..+...+..+..-+...+.++...+..++ -....+.-|+.+=-++..++..+++++..|..++
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555445444544444443311 1222233344444445555555555555554444
Q ss_pred HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 656 ATE---------------KQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAA 699 (859)
Q Consensus 656 ~~E---------------K~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ 699 (859)
... ...|.++..++.++-..+++++....++.......+..++.
T Consensus 266 ~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~ 324 (629)
T KOG0963|consen 266 AKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEK 324 (629)
T ss_pred HhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22334455555555555555555555555554444444443
No 135
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.87 E-value=1.2 Score=58.95 Aligned_cols=7 Identities=0% Similarity=-0.358 Sum_probs=4.4
Q ss_pred CCchhHH
Q 002997 346 GRSKKEL 352 (859)
Q Consensus 346 ~~~~~~~ 352 (859)
+++|.+|
T Consensus 65 ~r~~~~~ 71 (1353)
T TIGR02680 65 RKRMAWN 71 (1353)
T ss_pred cccHHHH
Confidence 5666666
No 136
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00063 Score=73.56 Aligned_cols=48 Identities=29% Similarity=0.685 Sum_probs=39.7
Q ss_pred CccccccccccCc---CcEEeCCCchhhhHHhHHHHhhcCCCCCCCcccccc
Q 002997 801 RERECVVCLAEEK---SVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 801 ~~~~C~ICle~~~---~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~ 849 (859)
...+|.||++.+. ..+.+||.|. |=..|+..|...-...||.||+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 3378999999743 4678999999 9999999998644578999999874
No 137
>PRK01156 chromosome segregation protein; Provisional
Probab=96.85 E-value=1.3 Score=56.07 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=10.8
Q ss_pred CchHHHHHhhcccHHHHHHHHhH
Q 002997 505 NGKDELILKLVPWVPELQNELNS 527 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e 527 (859)
+.+++++......+..+++++++
T Consensus 465 e~~~e~i~~~~~~i~~l~~~i~~ 487 (895)
T PRK01156 465 EKSNHIINHYNEKKSRLEEKIRE 487 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445554444444444444443
No 138
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.82 E-value=3 Score=55.63 Aligned_cols=105 Identities=19% Similarity=0.241 Sum_probs=60.2
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEWANQKVMQ-------AARRLSKDQAELKALRHEKQEVEQ----CQKDKQILEEN 573 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~q-------aA~rL~ke~~eLk~LR~ekeelq~----lkkekq~lee~ 573 (859)
-...+-+-.....+.-|+.++..|+--.+.=+-+ -.++|..++ ..|..++.+.++ +.++...+.+.
T Consensus 1267 ~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei---~~Lk~el~~ke~~~~el~~~~~~~q~~ 1343 (1822)
T KOG4674|consen 1267 KELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEI---SRLKEELEEKENLIAELKKELNRLQEK 1343 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777777888877666555443 133333333 333333333333 33333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002997 574 TVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKE 612 (859)
Q Consensus 574 t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraE 612 (859)
.-+++.++.+.......++.+++....+|++...+..+.
T Consensus 1344 ~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1344 IKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777666665555
No 139
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00034 Score=75.53 Aligned_cols=50 Identities=20% Similarity=0.443 Sum_probs=42.9
Q ss_pred cccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEE
Q 002997 803 RECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQV 854 (859)
Q Consensus 803 ~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i 854 (859)
..|.||...+.++|.+.|+|. ||..|+...+. ...+|++|.+.+.+++.+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~q-k~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQ-KGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhccccc-cCCcceecccccccccch
Confidence 469999999999999999999 99999987665 336899999998776543
No 140
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.79 E-value=0.84 Score=47.46 Aligned_cols=147 Identities=21% Similarity=0.212 Sum_probs=70.3
Q ss_pred HHhhcccHHHHHHHHhHhHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 511 ILKLVPWVPELQNELNSWTEW---ANQKVMQAARRLS-------KDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSE 580 (859)
Q Consensus 511 i~~l~~~v~~L~~~~~e~~~w---a~~k~~qaA~rL~-------ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLse 580 (859)
+..|..+|.-|+.++..|-+- |.+|.-++.+.-- -.-..+..+..+++.++.+.++-+.+++.+.++..+
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE 85 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE 85 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788889999998886542 3444433322211 111122224444444555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQ 660 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~ 660 (859)
....|--+.+++++ +..++......|.++.+.-+.+-..++.++..-..+.+.....+.
T Consensus 86 VarkL~iiE~dLE~---------------------~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~ 144 (205)
T KOG1003|consen 86 VARKLVIIEGELER---------------------AEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEE 144 (205)
T ss_pred HHHHHHHHHhHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHH
Confidence 44444444444443 333333333444444444454455555555444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002997 661 KVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 661 kL~~lqqELEeaK~~veq 678 (859)
.+..+...|-++....+.
T Consensus 145 ~ik~ltdKLkEaE~rAE~ 162 (205)
T KOG1003|consen 145 ELKELTDKLKEAETRAEF 162 (205)
T ss_pred HHHHHHHHHhhhhhhHHH
Confidence 444444444333333333
No 141
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.78 E-value=2.1 Score=52.21 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 002997 635 QKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQL---EAAA 711 (859)
Q Consensus 635 rk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~---ee~~ 711 (859)
+.+.+++..++..+..+++.++.-..++..++.+-++....+.++.+.+++.....+.|..++-....-..+. +...
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~ 277 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQG 277 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444445555555555555555555555666666666666666666666666777777766653211111111 1111
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q 002997 712 KAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 712 k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k~ 747 (859)
+...++.+ .+++..++.+..+.++..+|+.-.
T Consensus 278 ~~~~E~~~----~ELq~~qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 278 KVQLEMAH----QELQEAQEHLEALSQQNQQLQAQL 309 (617)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 12222222 345556666777777777776653
No 142
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.74 E-value=1.5 Score=54.88 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 588 ATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQ 667 (859)
Q Consensus 588 a~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqq 667 (859)
..+..++.+...+.++++.++++..++..+.....+...+.+++..-.++.+.++.+-.+..++-+.++...+.+.-+..
T Consensus 465 e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ 544 (1195)
T KOG4643|consen 465 ENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEE 544 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34455566666677777777777777777777777777777777766666666666666666655555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 002997 668 EISKAENRHNQLE 680 (859)
Q Consensus 668 ELEeaK~~veqlE 680 (859)
+-+.+-.++..+.
T Consensus 545 ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 545 ENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHH
Confidence 5555444444443
No 143
>PRK11281 hypothetical protein; Provisional
Probab=96.74 E-value=1.1 Score=57.72 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q 002997 720 LEAEKEMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 720 ~eaE~elqrlkdeIkrLEeELeqLr~k~ 747 (859)
.+.++.+++++...+.++++++-|+.+.
T Consensus 309 ~~~~~~l~~~~q~~~~i~eqi~~l~~s~ 336 (1113)
T PRK11281 309 LRVKNWLDRLTQSERNIKEQISVLKGSL 336 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 3555566666666666677776666553
No 144
>PTZ00121 MAEBL; Provisional
Probab=96.71 E-value=2.2 Score=55.12 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=10.5
Q ss_pred hhhhhhhhhhccchhhcc
Q 002997 312 MAESVEKSLSSLGEHAQN 329 (859)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~ 329 (859)
++|+..+---..|+|+|.
T Consensus 849 vynh~TkECvILGtHeQE 866 (2084)
T PTZ00121 849 YYNHATNECVILGTHEQE 866 (2084)
T ss_pred hhcCCCCeEEEEeecccc
Confidence 555555555566666653
No 145
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.65 E-value=1.1 Score=46.68 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 002997 726 MSKLTEDIGKLESQLSLL 743 (859)
Q Consensus 726 lqrlkdeIkrLEeELeqL 743 (859)
.+.++.+|.+|++.+.+.
T Consensus 174 teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 174 TEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344556677777777654
No 146
>PTZ00121 MAEBL; Provisional
Probab=96.62 E-value=3.4 Score=53.59 Aligned_cols=13 Identities=8% Similarity=-0.092 Sum_probs=6.2
Q ss_pred CCCCchhHHHHHH
Q 002997 84 GEWDDPIVCALGE 96 (859)
Q Consensus 84 ~~w~~~~~~~L~~ 96 (859)
-.|+.|-+.=|++
T Consensus 598 ~~~~npq~~~m~r 610 (2084)
T PTZ00121 598 KLNGNPQQKFMER 610 (2084)
T ss_pred ccCCCcHHHHHHh
Confidence 3455555544444
No 147
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.59 E-value=0.38 Score=53.91 Aligned_cols=11 Identities=36% Similarity=0.882 Sum_probs=7.6
Q ss_pred hHhHHHHHHHH
Q 002997 526 NSWTEWANQKV 536 (859)
Q Consensus 526 ~e~~~wa~~k~ 536 (859)
..|-+|-.+-+
T Consensus 137 ~~WYeWR~~ll 147 (325)
T PF08317_consen 137 KMWYEWRMQLL 147 (325)
T ss_pred HHHHHHHHHHH
Confidence 57888885544
No 148
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.58 E-value=5.1 Score=53.64 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=35.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 518 VPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVE 561 (859)
Q Consensus 518 v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq 561 (859)
-..+++.+++-.+-|.+++.+.-..+.+.-+.+..|-.+.+.|+
T Consensus 563 ~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~ 606 (1822)
T KOG4674|consen 563 DKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYK 606 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888999998888888888888888888888883
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.57 E-value=0.83 Score=51.13 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 569 ILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQR 648 (859)
Q Consensus 569 ~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~ 648 (859)
.+.+.....++.|......+..+++.++..+-.+....+.++.++...+...++. ...+. .++
T Consensus 144 gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~-------~~~d~----------~eL 206 (312)
T smart00787 144 GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL-------EDCDP----------TEL 206 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HhCCH----------HHH
Confidence 3334444455555555555555666666666666655555555555433222221 11121 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 649 VLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRN 702 (859)
Q Consensus 649 a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekk 702 (859)
..++++|.....++..++.++++.+.++..+..++....+.+.++..++.+.++
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444444444444445555555555555555555566666655553333
No 150
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0011 Score=75.59 Aligned_cols=50 Identities=30% Similarity=0.738 Sum_probs=43.5
Q ss_pred CCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 799 LKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 799 l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
+..+..|.||+..+-.+|.+||||. ||..|+..... ....||.||.++..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhc-cCCCCccccccccc
Confidence 3777899999999999999999999 99999987665 34689999998865
No 151
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.53 E-value=0.67 Score=52.67 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002997 728 KLTEDIGKLESQLSLLK 744 (859)
Q Consensus 728 rlkdeIkrLEeELeqLr 744 (859)
..+.++..++.++..++
T Consensus 250 ~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 250 EAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 152
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=96.46 E-value=0.27 Score=58.99 Aligned_cols=122 Identities=18% Similarity=0.184 Sum_probs=72.1
Q ss_pred HHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 002997 510 LILKLVPWVPELQNELNSWTEWANQKVMQAARRLS-KDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSE-------M 581 (859)
Q Consensus 510 ~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~-ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLse-------m 581 (859)
....+..++.+++..+.+ |++.. +....+..|.....+...+++..+.-.....+++.. .
T Consensus 22 q~a~~ttr~~e~e~~~~~------------ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~ 89 (916)
T KOG0249|consen 22 QLAPLTTRVPELEHSLPE------------ARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSI 89 (916)
T ss_pred ccCCCcCCcHHHHhhhhh------------hHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCc
Confidence 344556677777777777 55533 444444446666677766665544333322221110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 582 EFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSL 644 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~ 644 (859)
..--++.+.+|+.-.+.++.++..+..++..|+-++.+...+.+ ...+-+-+-++..+++++
T Consensus 90 ~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al 151 (916)
T KOG0249|consen 90 HDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAAL 151 (916)
T ss_pred ccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHH
Confidence 11124456677777788888888889999999888877766666 444444455555555554
No 153
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.35 E-value=0.52 Score=58.44 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 576 KRLSEMEFALTNATAQVERSSSTVHTLEM 604 (859)
Q Consensus 576 KrLsemE~aL~ka~~Qlera~a~vr~LE~ 604 (859)
.+|.+++.+|..+..+...+++..+.++.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665555555555543
No 154
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.35 E-value=3.1 Score=50.99 Aligned_cols=7 Identities=0% Similarity=-0.149 Sum_probs=3.8
Q ss_pred hhhhccc
Q 002997 459 TELVASS 465 (859)
Q Consensus 459 ar~fLss 465 (859)
...|++.
T Consensus 135 ~~~~i~~ 141 (650)
T TIGR03185 135 WDEFINE 141 (650)
T ss_pred HHHHHHH
Confidence 3446665
No 155
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.34 E-value=0.99 Score=44.97 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 658 EKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 658 EK~kL~~lqqELEeaK~~veq 678 (859)
..+++..+..+|+++...+..
T Consensus 78 l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 333333344444443333333
No 156
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0021 Score=71.97 Aligned_cols=54 Identities=26% Similarity=0.629 Sum_probs=42.3
Q ss_pred CCccccccccccCcCcE-----E---eCCCchhhhHHhHHHHhhcCC------CCCCCccccccCceEE
Q 002997 800 KRERECVVCLAEEKSVV-----F---LPCAHQVLCQKCNELHEKQGM------NDCPSCRSPIQQRIQV 854 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~V-----l---lpCgH~vfC~~Ci~~~~~~~~------~~CP~CR~~i~~~i~i 854 (859)
..+..|.||++.-...+ + .+|.|. ||..|+..|..... +.||.||.+...++.-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 34679999999855555 3 679999 99999998874333 6899999988776543
No 157
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0026 Score=68.32 Aligned_cols=49 Identities=22% Similarity=0.516 Sum_probs=38.6
Q ss_pred CCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcC-CCCCCCcccccc
Q 002997 800 KRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQG-MNDCPSCRSPIQ 849 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~-~~~CP~CR~~i~ 849 (859)
....+|++|.+.+..|-.+ +|+|. +|..|+....... ...||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 4567899999998887655 69999 9999999554322 358999998765
No 158
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.25 E-value=1.1 Score=50.99 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=57.1
Q ss_pred HHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002997 511 ILKLVPWVPELQNELNSWTEWANQKVMQAARRLSK--DQA--ELKALRHEKQEVEQ-CQKDKQILEENTVKRLSEMEFAL 585 (859)
Q Consensus 511 i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~k--e~~--eLk~LR~ekeelq~-lkkekq~lee~t~KrLsemE~aL 585 (859)
+.+|-+.--.|+.-+..-.|+--+|.|-..++|.. +.. -|+.||.++=++++ +.++.+.+.+..-|++..++..-
T Consensus 138 l~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ek 217 (552)
T KOG2129|consen 138 LKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEK 217 (552)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333445555555556777899999998873 222 34778888877777 77788888888888888877776
Q ss_pred HHHHHHHH
Q 002997 586 TNATAQVE 593 (859)
Q Consensus 586 ~ka~~Qle 593 (859)
+-+..++|
T Consensus 218 r~Lq~KlD 225 (552)
T KOG2129|consen 218 RYLQKKLD 225 (552)
T ss_pred HHHHHHhc
Confidence 66666655
No 159
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=4 Score=48.27 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTL 602 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~L 602 (859)
++.+|+..++.+...+|..+.+...+
T Consensus 51 q~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 51 QLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544433
No 160
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0028 Score=70.88 Aligned_cols=47 Identities=28% Similarity=0.723 Sum_probs=38.9
Q ss_pred cccccccccCcC---cEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 803 RECVVCLAEEKS---VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 803 ~~C~ICle~~~~---~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
..|.||++.+.. ..++||.|. |=..|++.|.......||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCC
Confidence 689999998553 677999999 99999999987664559999987643
No 161
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.16 E-value=6.3 Score=50.27 Aligned_cols=52 Identities=29% Similarity=0.334 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 637 ALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERM 688 (859)
Q Consensus 637 ~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk 688 (859)
.++....+.+++..+..++......+....+.+.+....+..++..+.+...
T Consensus 380 ~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~ 431 (908)
T COG0419 380 ALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEE 431 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555554444444444333
No 162
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.15 E-value=2.1 Score=44.98 Aligned_cols=100 Identities=29% Similarity=0.327 Sum_probs=51.5
Q ss_pred HHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 002997 509 ELILKLVPWVPELQNELNSWTEWANQKVMQAARR-LSKDQAELKALRHEKQEVEQCQK----DKQILEENTVKRLSEMEF 583 (859)
Q Consensus 509 e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~r-L~ke~~eLk~LR~ekeelq~lkk----ekq~lee~t~KrLsemE~ 583 (859)
++|-.|..+|.+|++.... +.|.|+.... -.....-|+.++.+..+++.... ++..+ ..+..++..++.
T Consensus 27 ~lIksLKeei~emkk~e~~-----~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L-~~~k~rl~~~ek 100 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEER-----NEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL-QNLKARLKELEK 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 7888899999998886665 5666555332 23333344445555555544221 11111 122234445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002997 584 ALTNATAQVERSSSTVHTLEMEHSVLKKEME 614 (859)
Q Consensus 584 aL~ka~~Qlera~a~vr~LE~E~a~lraEmE 614 (859)
.|..+.-+.+.....+.+++.|+.++....+
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444444443
No 163
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.15 E-value=3.8 Score=47.63 Aligned_cols=80 Identities=11% Similarity=0.169 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~ 656 (859)
...++++.|+++..-+...+-.+++-..+...++-+++..|..+...+......+.+..+.......+++-+...+++++
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeve 463 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVE 463 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHH
Confidence 34455666666666555555566666666667777777777766666555544444445555556666666655555544
No 164
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.14 E-value=2.2 Score=44.74 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=9.9
Q ss_pred HHHhhcccHHHHHHHHhH
Q 002997 510 LILKLVPWVPELQNELNS 527 (859)
Q Consensus 510 ~i~~l~~~v~~L~~~~~e 527 (859)
++..-..+|++|++++.+
T Consensus 6 vlSar~~ki~~L~n~l~e 23 (194)
T PF15619_consen 6 VLSARLHKIKELQNELAE 23 (194)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 334444556666666666
No 165
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.05 E-value=0.0023 Score=70.40 Aligned_cols=57 Identities=19% Similarity=0.465 Sum_probs=47.8
Q ss_pred cccCCCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCccccccCceEE
Q 002997 796 MGGLKRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQV 854 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i 854 (859)
+..+.....|.+|...+.++..+ -|-|. ||..|+-.+... ...||.|...|.++...
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~-~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEE-SKYCPTCDIVIHKTHPL 66 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHH-hccCCccceeccCcccc
Confidence 34567778999999999998765 59999 999999988875 58999999998887643
No 166
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.03 E-value=1.6 Score=43.36 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002997 580 EMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSC 627 (859)
Q Consensus 580 emE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~l 627 (859)
.+++.|..+...-+..+..|..++.++...+...+.+.+.+.-+.+.+
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~ei 54 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEI 54 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455555555555555555666666666666666666555555554443
No 167
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.03 E-value=3.4 Score=46.04 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcCc
Q 002997 718 IKLEAEKEMSKLTEDIGKLESQLSLLKYKSD 748 (859)
Q Consensus 718 ~r~eaE~elqrlkdeIkrLEeELeqLr~k~~ 748 (859)
+..+.|.-+.++...+..|..+-..|+.+.+
T Consensus 172 LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 172 LEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5556666667777777777777777776643
No 168
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.03 E-value=0.0066 Score=55.02 Aligned_cols=34 Identities=26% Similarity=0.642 Sum_probs=28.1
Q ss_pred cEEeCCCchhhhHHhHHHHhhc--CCCCCCCcccccc
Q 002997 815 VVFLPCAHQVLCQKCNELHEKQ--GMNDCPSCRSPIQ 849 (859)
Q Consensus 815 ~VllpCgH~vfC~~Ci~~~~~~--~~~~CP~CR~~i~ 849 (859)
+|+-.|+|. |-..||..|..+ ....||+||+++.
T Consensus 47 lv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 355689999 999999999874 3468999999874
No 169
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.02 E-value=2.4 Score=44.21 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEH 606 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~ 606 (859)
+|.-++..|..+....+.+.+.+..|+.+.
T Consensus 89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~ 118 (205)
T KOG1003|consen 89 KLVIIEGELERAEERAEAAESQSEELEEDL 118 (205)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 170
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.99 E-value=7.4 Score=49.64 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=22.8
Q ss_pred HHHHhhcc-cHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 509 ELILKLVP-WVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALR 554 (859)
Q Consensus 509 e~i~~l~~-~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR 554 (859)
..+..+.. ++..|+.++.. ..|+..- .+....+.+.+..+...+
T Consensus 473 ~~~~~~~~~el~~l~~~i~~-~~~~~~l-~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 473 KELLELYELELEELEEELSR-EKEEAEL-REEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33444444 77777777773 3444433 445555555555444444
No 171
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.98 E-value=0.0019 Score=76.82 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=40.9
Q ss_pred CccccccccccCcCcEE---eCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEE
Q 002997 801 RERECVVCLAEEKSVVF---LPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQV 854 (859)
Q Consensus 801 ~~~~C~ICle~~~~~Vl---lpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i 854 (859)
....|++|+..+.+-.+ .+|+|. ||..|+..|... ...||+||..|..++..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRC-AQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhh-cccCchhhhhhheeeee
Confidence 34579999887655433 489999 999999988763 47999999999887654
No 172
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.97 E-value=0.22 Score=53.89 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCCCCchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 002997 501 YIPQNGKDELILKLVPWVPELQNELNSWTEWANQKVMQAA---RRLSKDQAELKALRHE----KQEVEQCQKDKQILEEN 573 (859)
Q Consensus 501 ~v~~D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA---~rL~ke~~eLk~LR~e----keelq~lkkekq~lee~ 573 (859)
|+-.+=|+=+-..-...|++|+.+++.-+-=-+||.+|.- ..|.+.+.+...-+.+ +++.+.+...-..++..
T Consensus 3 Wa~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 3 WAVEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred chHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 3333333333334445566666666665555566666542 2233433333322222 22222222222222222
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002997 574 TVK---RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSA 624 (859)
Q Consensus 574 t~K---rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~ 624 (859)
..| .|.-.+..+.-.++|+..++..+.+|+.++..++.++|.....+....
T Consensus 83 rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 83 RQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred HHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 222 667778888889999999999999999999999999998776665433
No 173
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.94 E-value=2.1 Score=44.95 Aligned_cols=171 Identities=22% Similarity=0.213 Sum_probs=80.4
Q ss_pred cHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 517 WVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSS 596 (859)
Q Consensus 517 ~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~ 596 (859)
.|.-|+-++++ ++.-|-|.+..+-.....|+.+|.+.+..+........-...-.-.+..-++.|.....+.+...
T Consensus 11 EIsLLKqQLke----~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 11 EISLLKQQLKE----SQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR 86 (202)
T ss_pred hHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh
Confidence 35566666666 44444444555555555555555554444443322222111112244455555555555555555
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 597 STVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFE-REQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENR 675 (859)
Q Consensus 597 a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~e-kErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~ 675 (859)
..+..++.++..++..+..+-. ....+..+.. .+.++.. ..-...+..+..+++..+.+|...++..++....
T Consensus 87 ekl~~le~El~~Lr~~l~~~~~----~~~~~~~l~~~deak~~~--~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~ 160 (202)
T PF06818_consen 87 EKLGQLEAELAELREELACAGR----LKRQCQLLSESDEAKAQR--QAGEDELGSLRREVERLRAELQRERQRREEQRSS 160 (202)
T ss_pred hhhhhhHHHHHHHHHHHHhhcc----chhhhccccccchhHHhh--ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5666666666666666655400 0000000000 0000000 0001123344555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002997 676 HNQLETRWREERMARENLLAQA 697 (859)
Q Consensus 676 veqlE~r~qeekk~kEeLlaqa 697 (859)
.+.-...|.+++...=.-++|+
T Consensus 161 Fe~ER~~W~eEKekVi~YQkQL 182 (202)
T PF06818_consen 161 FEQERRTWQEEKEKVIRYQKQL 182 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566777766665555555
No 174
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.93 E-value=0.0027 Score=52.82 Aligned_cols=45 Identities=33% Similarity=0.780 Sum_probs=37.1
Q ss_pred ccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 802 ERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 802 ~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
...|..|.......+++||||. .|..|.... +..-||+|.++|..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~---rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGE---RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChh---hccCCCCCCCcccC
Confidence 4568889988888899999999 999997732 44689999999853
No 175
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.92 E-value=2.2 Score=48.92 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 587 NATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREE 654 (859)
Q Consensus 587 ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeE 654 (859)
.+.-+++..+..++.|+.++.++|...-..+...+ ++...+....++|..+..|+...|+.
T Consensus 294 easle~Enlqmr~qqleeentelRs~~arlksl~d-------klaee~qr~sd~LE~lrlql~~eq~l 354 (502)
T KOG0982|consen 294 EASLEKENLQMRDQQLEEENTELRSLIARLKSLAD-------KLAEEDQRSSDLLEALRLQLICEQKL 354 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34556677777788888777777776655443333 33334444555555555555544433
No 176
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.92 E-value=1.7 Score=42.61 Aligned_cols=104 Identities=18% Similarity=0.288 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 588 ATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQ 667 (859)
Q Consensus 588 a~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqq 667 (859)
+..++.++...+..++..+..++.+++.-...+.+....+.+-+.+-.... +.+..+++++...+..+..++.
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~-------~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDI-------KELQQLREELQELQQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443333322222222233 3444455555555566666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 668 EISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 668 ELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
+++.++..+...+..|.+.+..++.-+..+.
T Consensus 81 ~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~ 111 (132)
T PF07926_consen 81 EAESAKAELEESEASWEEQKEQLEKELSELE 111 (132)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 7777778888888888887777766655554
No 177
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.90 E-value=6.1 Score=51.20 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002997 582 EFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl 618 (859)
..++..+..++..+.+.+..++......+.+++.++.
T Consensus 716 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 752 (1047)
T PRK10246 716 LDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQA 752 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443333
No 178
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.82 E-value=9.5 Score=49.51 Aligned_cols=14 Identities=7% Similarity=0.029 Sum_probs=11.7
Q ss_pred CCCCCCchhhhccc
Q 002997 452 LALPVPNTELVASS 465 (859)
Q Consensus 452 ~~Lsqd~ar~fLss 465 (859)
-+|+|-.=..||.+
T Consensus 151 v~l~QG~f~~fl~a 164 (1047)
T PRK10246 151 MLLSQGQFAAFLNA 164 (1047)
T ss_pred eeeccccHHHHHhC
Confidence 47888888888888
No 179
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.79 E-value=8.3 Score=48.62 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Q 002997 574 TVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSC-----------------QEAFEREQK 636 (859)
Q Consensus 574 t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~l-----------------qeI~ekErk 636 (859)
..++++.|++.|.....|+...+...+.|..|++++..+.+.-...+.+....+ .++..+=++
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677777777777777766666666666666666666655444444332211 111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 637 ALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 637 ~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
+-+.|.....++..++..+..+++.+..+..+++....+.+.++...-..+.+..-|+.++.
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~ 554 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQ 554 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22333333344444555555555555555556666666666655555555555555555544
No 180
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.77 E-value=1.3 Score=49.54 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAK 622 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~e 622 (859)
+|....+||.-...+++....+...+..+.+.++....+.+....+
T Consensus 3 KL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~e 48 (319)
T PF09789_consen 3 KLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRE 48 (319)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666677777777777766666666666665554443
No 181
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.72 E-value=2 Score=51.79 Aligned_cols=13 Identities=8% Similarity=-0.026 Sum_probs=6.4
Q ss_pred ccccccccCCCCCcc
Q 002997 386 GFVLEKRVRPASDLS 400 (859)
Q Consensus 386 s~v~~K~g~~~s~~~ 400 (859)
.+| +.|.+.+.+.
T Consensus 53 ~~i--~~~~~~~~v~ 65 (563)
T TIGR00634 53 SRV--RSGENRAVVE 65 (563)
T ss_pred HHh--cCCCCeEEEE
Confidence 445 5555554443
No 182
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.69 E-value=6.6 Score=51.04 Aligned_cols=102 Identities=18% Similarity=0.068 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 002997 643 SLEAQRVLLREELATEKQKV--AVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRN----QREQLEAAAKAEEE 716 (859)
Q Consensus 643 a~EkQ~a~LQeEL~~EK~kL--~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekk----E~e~~ee~~k~e~e 716 (859)
..+..++.+...+...++.+ ....+.+.+..-+...++.+.++....+..+..|+-.... +........+..+.
T Consensus 975 ~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~ 1054 (1294)
T KOG0962|consen 975 ESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLS 1054 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 33444444555555555444 2333444455555555666666666655555555543331 11111122222333
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002997 717 MIKLEAEKEMSKLTEDIGKLESQLSLLK 744 (859)
Q Consensus 717 ~~r~eaE~elqrlkdeIkrLEeELeqLr 744 (859)
...-...-+.+.++..|.+++.+|.+-+
T Consensus 1055 se~~~~lg~~ke~e~~i~~~k~eL~~~~ 1082 (1294)
T KOG0962|consen 1055 SEKNLLLGEMKQYESQIKKLKQELREKD 1082 (1294)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444445555666666666666666433
No 183
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.69 E-value=3.4 Score=43.45 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 610 KKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 610 raEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~ 656 (859)
+.+++..+.......+.+.++..+-+.+.+-++.++.++..|+.++.
T Consensus 33 Keei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 33 KEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444445555555555555544444443
No 184
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.66 E-value=6.9 Score=46.76 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=43.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----------HHHHHHHHHHHHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQS-LEA----------QRVLLREELATEKQKVAVLQQ 667 (859)
Q Consensus 599 vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka-~Ek----------Q~a~LQeEL~~EK~kL~~lqq 667 (859)
...+...+..++...+..+..+.+.......+..-.-+.+..|+. .-. ++..++.|....+.++..++.
T Consensus 216 ~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~ 295 (511)
T PF09787_consen 216 SGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLER 295 (511)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHH
Confidence 333444444445555554544444442223333322233444444 111 134555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002997 668 EISKAENRHNQLETRWREERMAR 690 (859)
Q Consensus 668 ELEeaK~~veqlE~r~qeekk~k 690 (859)
++++.+.++...+.+...+....
T Consensus 296 Qi~~l~~e~~d~e~~~~~~~~~~ 318 (511)
T PF09787_consen 296 QIEQLRAELQDLEAQLEGEQESF 318 (511)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 66666655555555544433333
No 185
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.66 E-value=2.3 Score=41.55 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 585 LTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEK 659 (859)
Q Consensus 585 L~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK 659 (859)
+..+..+++.+...+..+..++.........|+..|..-...-.+..+.=..+...+.....++..++.+....+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333333333333333
No 186
>PLN03188 kinesin-12 family protein; Provisional
Probab=95.61 E-value=3.6 Score=53.08 Aligned_cols=51 Identities=27% Similarity=0.410 Sum_probs=27.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 002997 521 LQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEK-QEVEQCQKDKQILEE 572 (859)
Q Consensus 521 L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ek-eelq~lkkekq~lee 572 (859)
|+.+...|++ |.-|-|-.+..|.-+++-.+.|-++. -||+.-++..++|.+
T Consensus 1049 l~~er~~w~e-~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~ 1100 (1320)
T PLN03188 1049 LEQERLRWTE-AESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKE 1100 (1320)
T ss_pred HHHHHHHHHH-HhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444455555 45566777777777776666654442 234333333344433
No 187
>PF13514 AAA_27: AAA domain
Probab=95.61 E-value=10 Score=49.57 Aligned_cols=61 Identities=31% Similarity=0.448 Sum_probs=32.2
Q ss_pred CCCCCchHHHHHhhcccHHHHHHHHhHhH----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 501 YIPQNGKDELILKLVPWVPELQNELNSWT----EWAN--QKVMQAARRLSKDQAELKALRHEKQEVEQ 562 (859)
Q Consensus 501 ~v~~D~k~e~i~~l~~~v~~L~~~~~e~~----~wa~--~k~~qaA~rL~ke~~eLk~LR~ekeelq~ 562 (859)
|-|. .+.-.|-.+..++++++.++++.. +|.. +.+-++-.++.....+++.++.+...+++
T Consensus 143 fkpr-g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler 209 (1111)
T PF13514_consen 143 FKPR-GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLER 209 (1111)
T ss_pred hCCC-CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 444556666666666666666532 2322 22233344455555555556666555555
No 188
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.58 E-value=3.9 Score=43.38 Aligned_cols=106 Identities=25% Similarity=0.289 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAV----SC-QEAFEREQKALKNAQSLEAQRVLL 651 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k----~l-qeI~ekErk~lerLka~EkQ~a~L 651 (859)
-+.+|+..|.++...+.++-+..+.++.+++..+...+.-..++..... .| .+...+.......+..++.++..+
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~ 111 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAV 111 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666556666655555555554443322222111 11 112222333333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 652 REELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 652 QeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
+..+...+.++..+++++++++.....+-.+
T Consensus 112 ~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar 142 (219)
T TIGR02977 112 EETLAKLQEDIAKLQAKLAEARARQKALAIR 142 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444444443333
No 189
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=95.56 E-value=5.7 Score=45.18 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 714 EEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 714 e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
+++.+-+=.|++++-++.+|..|..++....+.
T Consensus 509 ELEVLLRVKEsEiQYLKqEissLkDELQtalrD 541 (593)
T KOG4807|consen 509 ELEVLLRVKESEIQYLKQEISSLKDELQTALRD 541 (593)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455566777788888888887777665544
No 190
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.56 E-value=2.5 Score=50.34 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002997 551 KALRHEKQEVEQCQK----DKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVS 626 (859)
Q Consensus 551 k~LR~ekeelq~lkk----ekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~ 626 (859)
++|+.+..+++...+ ..........++..+++.....+...+. |.........+..++...++-++........
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~- 235 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEA- 235 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 666666666665221 1111112223344445544445544444 2222222333444444444444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 627 CQEAFEREQKALKNAQSLEAQRVLLRE 653 (859)
Q Consensus 627 lqeI~ekErk~lerLka~EkQ~a~LQe 653 (859)
++.++..++..-++.-++.+..|+.
T Consensus 236 --el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 236 --ELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 3344444455556666666766666
No 191
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.54 E-value=4.7 Score=44.02 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 560 VEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLE-----------MEHSVLKKEMEAANLRAAKSAVSCQ 628 (859)
Q Consensus 560 lq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE-----------~E~a~lraEmEaAKl~~~es~k~lq 628 (859)
++..+.+.++.++....++..++.+++.+++.|..++..++.|- ..|+.+..+++..+.....-...+.
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~ 144 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELN 144 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666788888888888888888888877763 2455555555554444443333333
Q ss_pred HHHH
Q 002997 629 EAFE 632 (859)
Q Consensus 629 eI~e 632 (859)
++.+
T Consensus 145 e~~~ 148 (258)
T PF15397_consen 145 EMRQ 148 (258)
T ss_pred HHHH
Confidence 3333
No 192
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=95.51 E-value=4.6 Score=43.70 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTLEMEHSVL---------KKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQR 648 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~LE~E~a~l---------raEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~ 648 (859)
+......++++..-+++|...|..+|..+... +.-+..|-.+..++.....+....-+.....+...+..+
T Consensus 79 ~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v 158 (239)
T PF05276_consen 79 AQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRV 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555554333222 223333444445555555555555555555556666666
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 649 VLLREELATEKQKV-------AVLQQEISKAENRHNQLETRWREERMARENLLAQA 697 (859)
Q Consensus 649 a~LQeEL~~EK~kL-------~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqa 697 (859)
..|+.++..--.+- ......|++.+..+..++.++.+.+......+.-+
T Consensus 159 ~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnL 214 (239)
T PF05276_consen 159 QQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNL 214 (239)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554433333 44445555555555555555444444444443333
No 193
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.48 E-value=2.4 Score=44.67 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~ 656 (859)
-|.+|+..|.++...+.++-+....++.++...+.+.+.-..++......=. ..-=+.++.+....+.++..++..+.
T Consensus 31 ~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~--edLAr~al~~k~~~e~~~~~l~~~~~ 108 (221)
T PF04012_consen 31 AIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGR--EDLAREALQRKADLEEQAERLEQQLD 108 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777666666667766666666666554443332221100 00112344444444555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 657 TEKQKVAVLQQEISKAENRHN 677 (859)
Q Consensus 657 ~EK~kL~~lqqELEeaK~~ve 677 (859)
.....+..++..+.+++..+.
T Consensus 109 ~~~~~~~~l~~~l~~l~~kl~ 129 (221)
T PF04012_consen 109 QAEAQVEKLKEQLEELEAKLE 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333
No 194
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=95.46 E-value=0.0063 Score=64.09 Aligned_cols=47 Identities=30% Similarity=0.839 Sum_probs=36.9
Q ss_pred CCcccccccccc---CcCcEEe--C-CCchhhhHHhHHHHhhcCCCCCC--Ccccc
Q 002997 800 KRERECVVCLAE---EKSVVFL--P-CAHQVLCQKCNELHEKQGMNDCP--SCRSP 847 (859)
Q Consensus 800 ~~~~~C~ICle~---~~~~Vll--p-CgH~vfC~~Ci~~~~~~~~~~CP--~CR~~ 847 (859)
..++.||||... .-+++++ | |.|. +|..|.......+...|| .|.+-
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHH
Confidence 355789999974 3344443 6 9999 999999999988888999 89763
No 195
>PRK11281 hypothetical protein; Provisional
Probab=95.44 E-value=11 Score=49.09 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFE 632 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~e 632 (859)
+..+|..|.+...++..++.....+..++...+..-|+|.....+..+.+++|..
T Consensus 123 l~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 123 LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666665555554
No 196
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.39 E-value=9.3 Score=46.47 Aligned_cols=142 Identities=16% Similarity=0.197 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002997 541 RRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRA 620 (859)
Q Consensus 541 ~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~ 620 (859)
-+|.+.+.+++.|+.+....+.+=.-.++--.....+....+..-..+..-.-..+..|.++.+....+|.+.|+....+
T Consensus 134 lKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM 213 (786)
T PF05483_consen 134 LKLEEEIQENKDLRKENNATRHLCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEM 213 (786)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34777778888888877766663221111111111122222222222222223334445555555555566666555555
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 621 A-KSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 621 ~-es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
. .....+..+..-+.+....+...|+|++.|+..+..-..++..+.-.+.+.+..+.+++..
T Consensus 214 ~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~ 276 (786)
T PF05483_consen 214 HFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEK 276 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4444455555556666666666677777777766666666666666666666666555443
No 197
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.38 E-value=5 Score=43.38 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=63.6
Q ss_pred HHHHHHHHhHhHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 518 VPELQNELNSWTEWANQKV-MQAARR-----LSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQ 591 (859)
Q Consensus 518 v~~L~~~~~e~~~wa~~k~-~qaA~r-----L~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Q 591 (859)
....+.+++-|+-|-+.-. .|++.. |.+++.-|+. .-..+..+..+-+--+...+.++...|+.+.....|
T Consensus 75 ~~~a~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~---se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sq 151 (330)
T KOG2991|consen 75 KVMARDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKE---SEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQ 151 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999987654 555433 5566655554 222222222222223344444555555555555555
Q ss_pred HHHHHHH-------HHHH------HHhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 002997 592 VERSSST-------VHTL------EMEHSVLKKEMEAANLRAAKSAVSC------------QEAFEREQKALKNAQSLEA 646 (859)
Q Consensus 592 lera~a~-------vr~L------E~E~a~lraEmEaAKl~~~es~k~l------------qeI~ekErk~lerLka~Ek 646 (859)
|.-.++. .|.+ -.....++-++|+-+.+..+...++ ..++.+=|.+.+.-..+-+
T Consensus 152 i~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~ 231 (330)
T KOG2991|consen 152 IQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGH 231 (330)
T ss_pred HHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 5433322 2211 1223344555555555555555554 5566666655555555544
Q ss_pred H
Q 002997 647 Q 647 (859)
Q Consensus 647 Q 647 (859)
|
T Consensus 232 q 232 (330)
T KOG2991|consen 232 Q 232 (330)
T ss_pred h
Confidence 3
No 198
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.37 E-value=1.3 Score=47.96 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcC
Q 002997 725 EMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 725 elqrlkdeIkrLEeELeqLr~k~ 747 (859)
..+++++.++.|..+|+.++-..
T Consensus 183 Knk~lq~QL~~L~~EL~~~kde~ 205 (246)
T PF00769_consen 183 KNKRLQEQLKELKSELEQLKDEE 205 (246)
T ss_dssp H-HHHHHHHHHHHHHHHTTB-CC
T ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Confidence 35677888888888888887654
No 199
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.35 E-value=2 Score=46.68 Aligned_cols=123 Identities=24% Similarity=0.363 Sum_probs=72.6
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 525 LNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEM 604 (859)
Q Consensus 525 ~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~ 604 (859)
++||||=-.-||.|....|...++.|+.=|..++ + .|+.+|.+|.+...+++........|.-
T Consensus 5 ~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQ----f-------------QleSlEAaLqKQKqK~e~ek~e~s~LkR 67 (307)
T PF10481_consen 5 VEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQ----F-------------QLESLEAALQKQKQKVEEEKNEYSALKR 67 (307)
T ss_pred HhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH----H-------------hHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4688888888888888888777766554332221 1 3455566666665555444444444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 605 EHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 605 E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
|+ ......|..+.+...++...+..-+.|+.-++-.|...+..|..+.+++...+.+++.
T Consensus 68 En--------------q~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 68 EN--------------QSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred hh--------------hhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2233444555555555555666666677777777777776666666666666655544
No 200
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.34 E-value=9.3 Score=46.20 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=40.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 599 vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
++.++.++..+....+.......+.......+...-..+.+++...+++...+.+.|...+..-...++.+...+..+..
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544444444555555555555555555555555555444444444444444444444443
Q ss_pred H
Q 002997 679 L 679 (859)
Q Consensus 679 l 679 (859)
+
T Consensus 426 i 426 (560)
T PF06160_consen 426 I 426 (560)
T ss_pred H
Confidence 3
No 201
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.33 E-value=14 Score=48.11 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q 002997 719 KLEAEKEMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 719 r~eaE~elqrlkdeIkrLEeELeqLr~k~ 747 (859)
..++++...+.+...+.++++++-|+.+.
T Consensus 288 ~~~~~~~l~~~~q~~~~i~eQi~~l~~S~ 316 (1109)
T PRK10929 288 QRQAASQTLQVRQALNTLREQSQWLGVSN 316 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 33555566666666777777777666553
No 202
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.31 E-value=2 Score=53.18 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEA 646 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~Ek 646 (859)
++..+..+..+.++....+..+..++..++...+.... .+.++.+++.++.+|++.+-.
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~Lae-------R~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAE-------RYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555565555555544444333 344445555555555555433
No 203
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=7.4 Score=50.37 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=11.5
Q ss_pred cCCCccccccccccCc
Q 002997 798 GLKRERECVVCLAEEK 813 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~ 813 (859)
.+.....||+|-....
T Consensus 497 ~l~~~~~cplcgs~~h 512 (1042)
T TIGR00618 497 LELQEEPCPLCGSCIH 512 (1042)
T ss_pred hcCCCCCCCCCCCCCC
Confidence 3566778999998633
No 204
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.30 E-value=9.9 Score=46.25 Aligned_cols=144 Identities=18% Similarity=0.228 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002997 532 ANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKK 611 (859)
Q Consensus 532 a~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lra 611 (859)
-+.|=|| ..-|.+++.+...|-.++..+.......+.-+.....-|...+..+..+..++..+....+.....+..++.
T Consensus 400 k~~ke~e-leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKt 478 (786)
T PF05483_consen 400 KNNKEVE-LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKT 478 (786)
T ss_pred hhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334455 444666666666555555555554444443333334445555666666667777777777777788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 612 EMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 612 EmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
+++.-+++..+....+..+.-..+.+......+--.+..+|+.|..-+.+-.++..+++.+...-
T Consensus 479 ELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~ 543 (786)
T PF05483_consen 479 ELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETN 543 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888877777766666666666666677777776666655555555444333
No 205
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.27 E-value=4.7 Score=50.24 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002997 579 SEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAA 621 (859)
Q Consensus 579 semE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~ 621 (859)
..++..|..++.+++.....++..+..+..++.+++.++....
T Consensus 606 ~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s 648 (769)
T PF05911_consen 606 EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNS 648 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555554443333
No 206
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.27 E-value=2.1 Score=42.52 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 637 ALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 637 ~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
-......+..++..+..++......+.+++.+++++++.+..++.+.++.......+...+.
T Consensus 50 ~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 50 DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555566666666666666666666666665555555544444444444443
No 207
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.24 E-value=14 Score=48.06 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTL 602 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~L 602 (859)
+.++++++..+..++..++......
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~ 128 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQE 128 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444443333
No 208
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.23 E-value=0.0089 Score=68.82 Aligned_cols=49 Identities=24% Similarity=0.565 Sum_probs=40.7
Q ss_pred CCCccccccccccCcCcEEeCCCchhhhHHhHHHHhh----cCCCCCCCccccc
Q 002997 799 LKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEK----QGMNDCPSCRSPI 848 (859)
Q Consensus 799 l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~----~~~~~CP~CR~~i 848 (859)
-.....|.+|.+...+.+...|.|. ||.-|+..+.. .....||.|-.+.
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3566789999999999999999999 99999986654 3346899997654
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.18 E-value=2.1 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.752 Sum_probs=18.0
Q ss_pred hhHHhHHHHhhcCCCCCCCccccc
Q 002997 825 LCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 825 fC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
.|..|-+.+..+ ..-||+|.+.-
T Consensus 196 ~C~sC~qqIHRN-APiCPlCK~Ks 218 (230)
T PF10146_consen 196 TCQSCHQQIHRN-APICPLCKAKS 218 (230)
T ss_pred hhHhHHHHHhcC-CCCCccccccc
Confidence 799999977653 47899998754
No 210
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.18 E-value=0.0085 Score=68.68 Aligned_cols=52 Identities=25% Similarity=0.602 Sum_probs=45.0
Q ss_pred CCCccccccccccCcCcEE-eCCCchhhhHHhHHHHhhcCCCCCCCccccccCce
Q 002997 799 LKRERECVVCLAEEKSVVF-LPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRI 852 (859)
Q Consensus 799 l~~~~~C~ICle~~~~~Vl-lpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i 852 (859)
+..+..|++|.....+++. +.|||. ||..|+..+... ...||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~-~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSN-HQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhcc-CcCCcccccccchhh
Confidence 6778999999999999999 499999 999999988765 679999998775543
No 211
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.18 E-value=4.3 Score=45.54 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
+...+.|+..+...|+....+..+++.++.++++..
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 212
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.15 E-value=8.1 Score=48.12 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002997 583 FALTNATAQVERSSSTVHTLEMEHSVLKKEM 613 (859)
Q Consensus 583 ~aL~ka~~Qlera~a~vr~LE~E~a~lraEm 613 (859)
++|..++.|+..+++.....++....++..+
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555444444443
No 213
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=10 Score=45.05 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Q 002997 535 KVMQAARRLSKDQAELKALRHEKQEVEQ----CQKDKQILE---ENTVKRLSEMEFALTNATAQVERSS------STVHT 601 (859)
Q Consensus 535 k~~qaA~rL~ke~~eLk~LR~ekeelq~----lkkekq~le---e~t~KrLsemE~aL~ka~~Qlera~------a~vr~ 601 (859)
||-|.-..+.+.-..+..|++..-.|.. +.++...++ +.....|..|+..|.+|..-.+-|- ..++.
T Consensus 346 kv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~ 425 (654)
T KOG4809|consen 346 KVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQ 425 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHH
Confidence 3333333455555556666666555544 111112222 2333378888888888877766443 34777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 602 LEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLE 645 (859)
Q Consensus 602 LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~E 645 (859)
+|.++...+.+.-.|....++....+.++....++--.++..++
T Consensus 426 le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele 469 (654)
T KOG4809|consen 426 LEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE 469 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC
Confidence 77777777777777777666666666666555554444444443
No 214
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.05 E-value=7.6 Score=43.55 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002997 543 LSKDQAELKALRHEKQEV-EQCQKDKQILEENTVK-----------RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLK 610 (859)
Q Consensus 543 L~ke~~eLk~LR~ekeel-q~lkkekq~lee~t~K-----------rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lr 610 (859)
+..+......+|.+.+.| +.|.+.+..+.+.... --+.....|..++.+++........+-.++..++
T Consensus 62 l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~ 141 (309)
T PF09728_consen 62 LQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELR 141 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 445555555566666666 4455555555544333 2344566777788888877777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 611 KEMEAANLRAAKSAVSCQEAF 631 (859)
Q Consensus 611 aEmEaAKl~~~es~k~lqeI~ 631 (859)
..+...-.++......+..+.
T Consensus 142 eKlK~l~eQye~rE~~~~~~~ 162 (309)
T PF09728_consen 142 EKLKSLIEQYELREEHFEKLL 162 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888877666665555554433
No 215
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.02 E-value=5.8 Score=42.05 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 627 CQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQ 706 (859)
Q Consensus 627 lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~ 706 (859)
++.+....-.+...+.++++-...|....+..+.-+..++.-=+.++..+..+..++.+..++.+.|.+.++.
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAee------- 143 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEE------- 143 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3333333333444444444444444444444444444444433444444444444444455555555444431
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002997 707 LEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLK 744 (859)
Q Consensus 707 ~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr 744 (859)
....+-.++..++.+...+...++..+++.+-.+..|.
T Consensus 144 kL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe 181 (207)
T PF05010_consen 144 KLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE 181 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223333444444444444444444444444443
No 216
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.01 E-value=0.015 Score=65.55 Aligned_cols=35 Identities=34% Similarity=0.711 Sum_probs=31.3
Q ss_pred CCccccccccccCcCcEEeCCCchhhhHHhHHHHhh
Q 002997 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEK 835 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~ 835 (859)
++++.|+||..-+++++++||+|+ +|..|+.....
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHN-LCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccH-HHHHHHHhhcc
Confidence 567899999999999999999999 99999985543
No 217
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.99 E-value=0.016 Score=47.12 Aligned_cols=43 Identities=33% Similarity=0.758 Sum_probs=22.6
Q ss_pred ccccccc--CcCcEEe--CCCchhhhHHhHHHHhhcCCCCCCCccccc
Q 002997 805 CVVCLAE--EKSVVFL--PCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 805 C~ICle~--~~~~Vll--pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
|++|.+. ..+.-+. +||+. +|..|...........||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 6788876 3444555 48999 999998877765567999999886
No 218
>PRK10698 phage shock protein PspA; Provisional
Probab=94.98 E-value=3.5 Score=44.00 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
+.+|+..|..+...+.++-+..+.++.++...+...+.
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~ 70 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVE 70 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555444444
No 219
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.97 E-value=0.02 Score=63.07 Aligned_cols=52 Identities=23% Similarity=0.599 Sum_probs=40.3
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhh-cCCCCCCCcccccc
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEK-QGMNDCPSCRSPIQ 849 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~-~~~~~CP~CR~~i~ 849 (859)
+.-++...|.||-....-..++||+|. .|-.|+-.... -....||+||+.-.
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccc
Confidence 344667789999999888889999999 99999873321 12468999998653
No 220
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.90 E-value=6.2 Score=41.84 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002997 536 VMQAARRLSKDQAELKALRHEKQEVEQ--CQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEM 613 (859)
Q Consensus 536 ~~qaA~rL~ke~~eLk~LR~ekeelq~--lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEm 613 (859)
+|...+++...+.+++..-.+.+.--. +.+..+.|......+....+..+..+..+++.....+..|+..+..++.++
T Consensus 50 ~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki 129 (219)
T TIGR02977 50 TIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKL 129 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443332222111 666667777766666677777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 002997 614 EAANLRAA 621 (859)
Q Consensus 614 EaAKl~~~ 621 (859)
+.++.+..
T Consensus 130 ~~~k~k~~ 137 (219)
T TIGR02977 130 AEARARQK 137 (219)
T ss_pred HHHHHHHH
Confidence 77665544
No 221
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.89 E-value=0.54 Score=52.59 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=15.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhc
Q 002997 725 EMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 725 elqrlkdeIkrLEeELeqLr~k 746 (859)
+.+.++..+.....++++|++-
T Consensus 114 e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666677888888888876
No 222
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=94.88 E-value=8.5 Score=47.40 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREER 687 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeek 687 (859)
++...++.++...+.++..+..++++..+++++++..+.|++
T Consensus 995 Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQek 1036 (1424)
T KOG4572|consen 995 RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEK 1036 (1424)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555555666666666666666666666666665544
No 223
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.87 E-value=11 Score=46.22 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=14.6
Q ss_pred cCcCcEEeCCCchhhhHHhHHH
Q 002997 811 EEKSVVFLPCAHQVLCQKCNEL 832 (859)
Q Consensus 811 ~~~~~VllpCgH~vfC~~Ci~~ 832 (859)
..++.+-+.|--. +-..|-+.
T Consensus 1074 eLRDtINTS~Die-LL~ACreE 1094 (1259)
T KOG0163|consen 1074 ELRDTINTSCDIE-LLEACREE 1094 (1259)
T ss_pred HHHHhhcccccHH-HHHHHHHH
Confidence 4667777888777 66777553
No 224
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.014 Score=66.88 Aligned_cols=50 Identities=26% Similarity=0.733 Sum_probs=40.1
Q ss_pred CCCcccccccccc-----------------CcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCcccccc
Q 002997 799 LKRERECVVCLAE-----------------EKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 799 l~~~~~C~ICle~-----------------~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~ 849 (859)
.+....|+||+.. .++-.++||.|. |=..|+..|.+...-.||.||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCC
Confidence 4667789999973 123456799999 9999999999866568999999875
No 225
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=94.80 E-value=4.3 Score=46.68 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 534 QKVMQAARRLSKDQAELKALRHEKQEVEQ 562 (859)
Q Consensus 534 ~k~~qaA~rL~ke~~eLk~LR~ekeelq~ 562 (859)
+++.+-.+++.+++.+|+...+..+++|.
T Consensus 238 k~akehv~km~kdle~Lq~aEqsl~dlQk 266 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEGLQRAEQSLEDLQK 266 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567777777777776666666666
No 226
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.76 E-value=6.3 Score=46.46 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLE 603 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE 603 (859)
++..++.++..+..++..+++.+..+.
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444444443
No 227
>PRK10698 phage shock protein PspA; Provisional
Probab=94.76 E-value=7 Score=41.74 Aligned_cols=105 Identities=14% Similarity=0.204 Sum_probs=52.5
Q ss_pred HHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 510 LILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQ--CQKDKQILEENTVKRLSEMEFALTN 587 (859)
Q Consensus 510 ~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~--lkkekq~lee~t~KrLsemE~aL~k 587 (859)
||..++..+.+--.+++. +-.++|...+++...+.+++..-.+.+.--. +.+..+.|......+.......+..
T Consensus 28 ~l~q~i~em~~~l~~~r~----alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~ 103 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRS----TSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIAT 103 (222)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433 4445666666666666555554333322222 5556667776644444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002997 588 ATAQVERSSSTVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 588 a~~Qlera~a~vr~LE~E~a~lraEmEaAKl 618 (859)
+..+++.....+..|...+..++..++.++.
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444444444444443
No 228
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.75 E-value=1.7 Score=42.21 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 592 VERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISK 671 (859)
Q Consensus 592 lera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEe 671 (859)
+++..+.++.++.|+..++.++.+....-+....++..+...- +.+....+++..|+.++.....+...+.+=+-+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~----e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN----EELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555666666666666666555444444444433332221 112333344444444444444444444333333
Q ss_pred HHHHHHHHHHH
Q 002997 672 AENRHNQLETR 682 (859)
Q Consensus 672 aK~~veqlE~r 682 (859)
...++++++..
T Consensus 94 K~E~veEL~~D 104 (120)
T PF12325_consen 94 KSEEVEELRAD 104 (120)
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 229
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.72 E-value=11 Score=43.92 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=41.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQ 667 (859)
Q Consensus 599 vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqq 667 (859)
|.+|+.-++++-.+.=...+.-.+..+.++.+++--....+.|+.-+.++..||-++...+.....|+.
T Consensus 364 inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQE 432 (527)
T PF15066_consen 364 INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQE 432 (527)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHH
Confidence 445554444444444444455555556666666666666666777777777777777666666655444
No 230
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.70 E-value=2.5 Score=47.09 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 002997 549 ELKALRHEKQEVE 561 (859)
Q Consensus 549 eLk~LR~ekeelq 561 (859)
++..||.+...+.
T Consensus 175 EN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 175 ENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHhh
Confidence 5556666655555
No 231
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.68 E-value=0.67 Score=51.87 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 625 VSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVA 663 (859)
Q Consensus 625 k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~ 663 (859)
+++..+...+..+.+++..++++...+.++|...+.+..
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555544444444444444333
No 232
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.63 E-value=5.3 Score=39.82 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVL 609 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~l 609 (859)
.|...+..+..+..+.+.+++.+..|++++..+
T Consensus 32 eLe~~q~~~e~~~~daEn~k~eie~L~~el~~l 64 (140)
T PF10473_consen 32 ELEMSQENKECLILDAENSKAEIETLEEELEEL 64 (140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433333
No 233
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.60 E-value=4.8 Score=45.22 Aligned_cols=123 Identities=20% Similarity=0.186 Sum_probs=81.7
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhH-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWT-EWANQ---------KVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQ----IL 570 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~-~wa~~---------k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq----~l 570 (859)
|+=.-|+-.|..+-..|++...+|. .|+.. .-...+..|.+..++++.|..+..+++....+.+ -+
T Consensus 26 DqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlL 105 (319)
T PF09789_consen 26 DQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLL 105 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3344688888889999999998877 56633 2245567777777777777777777666332222 22
Q ss_pred HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002997 571 EENTV---------------KRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSC 627 (859)
Q Consensus 571 ee~t~---------------KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~l 627 (859)
-+... ..-+.+=..|.++..|+...+-+++.+..|..++..|.++-+.++...-.++
T Consensus 106 R~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 106 REKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 1344555667777777777777777777788888888887777777666666
No 234
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.59 E-value=5.5 Score=43.24 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002997 543 LSKDQAELKALRHEKQEVEQ 562 (859)
Q Consensus 543 L~ke~~eLk~LR~ekeelq~ 562 (859)
|.+...++..++.+.+.++.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~ 41 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRR 41 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 235
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.58 E-value=0.025 Score=47.67 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=30.9
Q ss_pred ccCCCccccccccccCcCcEEe-CCCchhhhHHhHHHHhh-cCCCCCCC
Q 002997 797 GGLKRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEK-QGMNDCPS 843 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~-~~~~~CP~ 843 (859)
........|||.+..+.++|.- .|+|. |.+..+..+.. .+...||.
T Consensus 6 ~~~~~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 6 EGGTISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SSB--SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred eccEeccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 3345668999999999999885 99999 99999999883 33467998
No 236
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.58 E-value=7.9 Score=47.19 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=39.3
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKA-LRHEKQEVEQCQKDKQILEENTVKRLSEMEF 583 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~-LR~ekeelq~lkkekq~lee~t~KrLsemE~ 583 (859)
..+|..+....+++.-|+.+|.- |-++.-|+++ .+.+.+.+. |.+...++......-...++.++ .++.
T Consensus 101 ankda~lrq~eekn~slqerLel----aE~~l~qs~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~----kl~~ 170 (916)
T KOG0249|consen 101 ANKDADLRQNEEKNRSLQERLEL----AEPKLQQSLR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTR----KLEE 170 (916)
T ss_pred hCcchhhchhHHhhhhhhHHHHH----hhHhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHH----HHHH
Confidence 44555555555555555444443 5556666655 444444443 66666655555433333333333 3333
Q ss_pred HHHHHHHHHHHHH
Q 002997 584 ALTNATAQVERSS 596 (859)
Q Consensus 584 aL~ka~~Qlera~ 596 (859)
.++..+..+.+|+
T Consensus 171 ~~qe~naeL~rar 183 (916)
T KOG0249|consen 171 QLEELNAELQRAR 183 (916)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 237
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.50 E-value=13 Score=43.56 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=10.6
Q ss_pred hhhcCccchhhhhhcCCCcc
Q 002997 357 QKSCHVPTEKSYRTYGKGAF 376 (859)
Q Consensus 357 ~~~~~~~~~k~~~~lG~kas 376 (859)
|-.| .+-.|++|---|+
T Consensus 106 qq~c---~~~I~~yL~engf 122 (622)
T COG5185 106 QQAC---QEEIYDYLKENGF 122 (622)
T ss_pred HHHH---HHHHHHHHHHcCC
Confidence 4477 6777888743333
No 238
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.50 E-value=8.2 Score=41.41 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 575 VKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREE 654 (859)
Q Consensus 575 ~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeE 654 (859)
..-|.+|+..|.++...+.++-+..+.++.++...+..++.-+.++......=. ..-=+.++.+.+.++.++..++..
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~al~~~~~le~~~~~~~~~ 107 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAREALEEKQSLEDLAKALEAE 107 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788888888888888888888888888877777765544443322111 111234455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 655 LATEKQKVAVLQQEISKAENRHNQLET 681 (859)
Q Consensus 655 L~~EK~kL~~lqqELEeaK~~veqlE~ 681 (859)
+......+.+++..+..+...+.+++.
T Consensus 108 ~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 108 LQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444444444444333
No 239
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.39 E-value=17 Score=44.54 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 633 REQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 633 kErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
+++.+.+++..++... .+.|.....+|...+++...+-..+.+++.+
T Consensus 572 y~~alqekvsevEsrl---~E~L~~~E~rLNeARREHtKaVVsLRQ~qrq 618 (739)
T PF07111_consen 572 YERALQEKVSEVESRL---REQLSEMEKRLNEARREHTKAVVSLRQIQRQ 618 (739)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444554444332 3344444444544445544444444444443
No 240
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.34 E-value=3.1 Score=45.12 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEME 614 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmE 614 (859)
+|..++.....+...+..+...+..|+.+....+.+.+
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~ 50 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAE 50 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555544444433333
No 241
>PRK00106 hypothetical protein; Provisional
Probab=94.30 E-value=16 Score=43.96 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=11.3
Q ss_pred cccccccCcCcEEeCCCch
Q 002997 805 CVVCLAEEKSVVFLPCAHQ 823 (859)
Q Consensus 805 C~ICle~~~~~VllpCgH~ 823 (859)
+-+=.+....+|++.|+--
T Consensus 257 vdliiddtp~~v~lS~fdp 275 (535)
T PRK00106 257 IDVIIDDTPEVVVLSGFDP 275 (535)
T ss_pred ceEEEcCCCCeEEEeCCCh
Confidence 3344455666777777655
No 242
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.23 E-value=15 Score=43.33 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKK 611 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lra 611 (859)
....|..++.++..++..+..+++.+..++.
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444444
No 243
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.15 E-value=11 Score=44.19 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=9.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhh
Q 002997 725 EMSKLTEDIGKLESQLSLLKY 745 (859)
Q Consensus 725 elqrlkdeIkrLEeELeqLr~ 745 (859)
++...+.++..++.++...+.
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 244
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.93 E-value=0.025 Score=68.85 Aligned_cols=45 Identities=27% Similarity=0.684 Sum_probs=38.2
Q ss_pred cccccccccCcCcEEeCCCchhhhHHhHHHHhhcC-CCCCCCcccccc
Q 002997 803 RECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQG-MNDCPSCRSPIQ 849 (859)
Q Consensus 803 ~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~-~~~CP~CR~~i~ 849 (859)
..|.+|++ ...+++++|+|. ||..|+....... ...||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 889999999999 9999999766533 347999998764
No 245
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.90 E-value=11 Score=46.64 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 583 FALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKV 662 (859)
Q Consensus 583 ~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL 662 (859)
...+.+.............+|.++..+++++..+|.+.......+.++.+.---+++.+-.+.. -|-+.+..|.++
T Consensus 55 ~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~----sQvefE~~Khei 130 (717)
T PF09730_consen 55 AENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ----SQVEFEGLKHEI 130 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHH
Confidence 3344444444555566778888999999999999999888888887777665544444444322 133444555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002997 663 AVLQQEISKAENRHNQL 679 (859)
Q Consensus 663 ~~lqqELEeaK~~veql 679 (859)
.++..+++-++.+++++
T Consensus 131 ~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 131 KRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 246
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.89 E-value=8.8 Score=47.78 Aligned_cols=130 Identities=13% Similarity=0.156 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002997 546 DQAELKALRHEKQEVEQC-QKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSA 624 (859)
Q Consensus 546 e~~eLk~LR~ekeelq~l-kkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~ 624 (859)
..+-++-|-+-.+.++.. ........+...+++..+...+++--.+++.+.+.+..+...-..+.+++|.+..+.+...
T Consensus 534 ~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 534 PQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLM 613 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555442 1222233344445666666666666666777788888888888888888888887766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 625 VSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 625 k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
+-++++...-....-.+-..| ..+.+||...+.++..++..+++++++++.
T Consensus 614 ~R~~~vl~~l~~~~P~LS~AE---r~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 614 KRVDRVLQLLNSQLPVLSEAE---REFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555443322111122222 334445555555555555555555554433
No 247
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.86 E-value=0.031 Score=60.56 Aligned_cols=43 Identities=23% Similarity=0.641 Sum_probs=36.1
Q ss_pred cccccccccCcCcEEeC-CCchhhhHHhHHHHhhcCCCCCCCccc
Q 002997 803 RECVVCLAEEKSVVFLP-CAHQVLCQKCNELHEKQGMNDCPSCRS 846 (859)
Q Consensus 803 ~~C~ICle~~~~~Vllp-CgH~vfC~~Ci~~~~~~~~~~CP~CR~ 846 (859)
+.|+.|....++++-+| |+|. ||.+|+..........||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 78999999999999884 7888 9999999554434589999976
No 248
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=93.82 E-value=12 Score=40.63 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 592 VERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISK 671 (859)
Q Consensus 592 lera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEe 671 (859)
|..+...|...|.+....+.+....-..+......++.+.++-+..+.+.+=+-..+..+...|+..+.++..+++++.+
T Consensus 123 Ln~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~ 202 (239)
T PF05276_consen 123 LNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQ 202 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666666666778888888899999999999999999999999999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 672 AENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 672 aK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
+|..... ....++.+-.++-
T Consensus 203 aK~~Y~~-------ALrnLE~ISeeIH 222 (239)
T PF05276_consen 203 AKSRYSE-------ALRNLEQISEEIH 222 (239)
T ss_pred HHHHHHH-------HHHHHHHHHHHHH
Confidence 7765544 5556666655554
No 249
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.82 E-value=10 Score=39.94 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 002997 737 ESQLSLLK 744 (859)
Q Consensus 737 EeELeqLr 744 (859)
+.+++.+.
T Consensus 195 e~~l~~~~ 202 (221)
T PF04012_consen 195 EAELEELE 202 (221)
T ss_pred HHHHHHhc
Confidence 33334333
No 250
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.69 E-value=8.4 Score=42.33 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002997 537 MQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAA 616 (859)
Q Consensus 537 ~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaA 616 (859)
.+..-.|.+.+.+--.+|..+...-...-+...++......+..+...+.....+++...++...|++.|..-+.|+|.+
T Consensus 130 t~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~ 209 (267)
T PF10234_consen 130 TQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERN 209 (267)
T ss_pred HHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666655566666555444444555666666666677777777777777777777777777777777777775
Q ss_pred HHHHH
Q 002997 617 NLRAA 621 (859)
Q Consensus 617 Kl~~~ 621 (859)
+.+..
T Consensus 210 qKRL~ 214 (267)
T PF10234_consen 210 QKRLQ 214 (267)
T ss_pred HHHHH
Confidence 55433
No 251
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=26 Score=43.99 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=18.8
Q ss_pred CchHHHHHhhcccHHHHHHHHhHh
Q 002997 505 NGKDELILKLVPWVPELQNELNSW 528 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~ 528 (859)
|+++...-.|+.|...-+..+.+|
T Consensus 567 d~leaa~e~lE~r~~~~e~~~~e~ 590 (984)
T COG4717 567 DQLEAAYEALEGRFAAAEAAMAEW 590 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHH
Confidence 788888888888888877777654
No 252
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.61 E-value=0.02 Score=70.52 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 509 ELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNA 588 (859)
Q Consensus 509 e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka 588 (859)
+=+.++..+|++|+.+... .|+....|.+++.....++.+.+.|+++..+.+.--....++...++..+..+
T Consensus 325 ed~~~lk~qvk~Lee~N~~--------l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L 396 (713)
T PF05622_consen 325 EDLEDLKRQVKELEEDNAV--------LLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQL 396 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555554433 34444455555555555555555555433222221122222333444444445
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 589 TAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAK----------SAVSCQEAFE--REQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 589 ~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~e----------s~k~lqeI~e--kErk~lerLka~EkQ~a~LQeEL~ 656 (859)
..+++.+.....++..+++.++...+........ .......+.. ...++..++..++.+...|+..+.
T Consensus 397 ~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e 476 (713)
T PF05622_consen 397 EEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQE 476 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555455555555555444433322111000 0000011111 012344455555555555544443
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 657 TE-KQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQ 703 (859)
Q Consensus 657 ~E-K~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE 703 (859)
.. ..++..++.++++++.....++...+...+....+..+++..++.
T Consensus 477 ~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~ 524 (713)
T PF05622_consen 477 ESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKS 524 (713)
T ss_dssp ------------------------------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 345567777888888777777777776666666666666654443
No 253
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.61 E-value=33 Score=45.05 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhhc
Q 002997 733 IGKLESQLSLLKYK 746 (859)
Q Consensus 733 IkrLEeELeqLr~k 746 (859)
...++.++..+++.
T Consensus 1064 ~ke~e~~i~~~k~e 1077 (1294)
T KOG0962|consen 1064 MKQYESQIKKLKQE 1077 (1294)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 254
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.55 E-value=12 Score=39.78 Aligned_cols=20 Identities=10% Similarity=0.209 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 002997 596 SSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 596 ~a~vr~LE~E~a~lraEmEa 615 (859)
+..+.++..+.+.+.+.+..
T Consensus 68 ~~~i~~~~~erdq~~~dL~s 87 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNS 87 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444443
No 255
>PF13514 AAA_27: AAA domain
Probab=93.54 E-value=33 Score=44.92 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=17.0
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWT 529 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~ 529 (859)
......+.....++..++.++.+|.
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1111)
T PF13514_consen 683 QQLEQELEEAEAELQEAQEALEEWQ 707 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777765
No 256
>PRK12704 phosphodiesterase; Provisional
Probab=93.49 E-value=14 Score=44.32 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 575 VKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSL 644 (859)
Q Consensus 575 ~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~ 644 (859)
.+++...|+.|.+-..++++-...+.+.+.++...+.+++.-+...++..+.+.++..+....++++..+
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~l 150 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL 150 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3345555666666666666666666666666666666666666666666666666666666666666555
No 257
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=19 Score=41.95 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 721 EAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 721 eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
+.+.++.++.++-+.|++++..+...
T Consensus 400 Kq~~DI~Kil~etreLqkq~ns~se~ 425 (521)
T KOG1937|consen 400 KQEQDIVKILEETRELQKQENSESEA 425 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777766665544
No 258
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.46 E-value=0.075 Score=57.72 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=39.4
Q ss_pred CCCccccccccccC----cCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 799 LKRERECVVCLAEE----KSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 799 l~~~~~C~ICle~~----~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
......|||+...+ +-+++.||||+ ||..|+.... ....||+|..+|...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k--~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK--KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc--ccccccccCCccccC
Confidence 35667999999875 34566799999 9999999774 235799999999754
No 259
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.43 E-value=26 Score=43.41 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=21.7
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEWANQKVMQAA 540 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA 540 (859)
++..++|..+.==+++|+.-+-+--|---+++|...
T Consensus 330 ~kta~KVrt~KYLLgELkaLVaeq~DsE~qRLitEv 365 (861)
T PF15254_consen 330 NKTAEKVRTLKYLLGELKALVAEQEDSEVQRLITEV 365 (861)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 566666666666667777766554455555554433
No 260
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.41 E-value=0.022 Score=71.40 Aligned_cols=110 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAK--------------SAVSCQEAFEREQKALKNAQ 642 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~e--------------s~k~lqeI~ekErk~lerLk 642 (859)
.|.++..++.....++........+|..+++.+..+++.+...... ....+.+-......+...+.
T Consensus 188 qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~ 267 (859)
T PF01576_consen 188 QLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLR 267 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHH
Confidence 4444444444444444455555555555555555555554332222 22222222223334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 643 SLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREE 686 (859)
Q Consensus 643 a~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qee 686 (859)
.++.++..+.+.+..+......++.++..++.++..|..++...
T Consensus 268 ~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e 311 (859)
T PF01576_consen 268 QLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEE 311 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666665543
No 261
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.35 E-value=23 Score=42.52 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=11.1
Q ss_pred ccccccCcCcEEeCCCch
Q 002997 806 VVCLAEEKSVVFLPCAHQ 823 (859)
Q Consensus 806 ~ICle~~~~~VllpCgH~ 823 (859)
-+=.+....+|++.|+.-
T Consensus 237 d~iiddtp~~v~ls~fdp 254 (514)
T TIGR03319 237 DLIIDDTPEAVILSGFDP 254 (514)
T ss_pred eEEEcCCCCeEEecCCch
Confidence 333455566777777765
No 262
>PRK12704 phosphodiesterase; Provisional
Probab=93.34 E-value=23 Score=42.54 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=9.3
Q ss_pred cccccCcCcEEeCCCch
Q 002997 807 VCLAEEKSVVFLPCAHQ 823 (859)
Q Consensus 807 ICle~~~~~VllpCgH~ 823 (859)
|=.+..-.+|++.|+--
T Consensus 244 ~iiddtp~~v~ls~~~~ 260 (520)
T PRK12704 244 LIIDDTPEAVILSGFDP 260 (520)
T ss_pred EEEcCCCCeEEEecCCh
Confidence 33344556666666554
No 263
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.049 Score=61.66 Aligned_cols=33 Identities=30% Similarity=0.785 Sum_probs=27.9
Q ss_pred ccccccccccCc---CcEEeCCCchhhhHHhHHHHhh
Q 002997 802 ERECVVCLAEEK---SVVFLPCAHQVLCQKCNELHEK 835 (859)
Q Consensus 802 ~~~C~ICle~~~---~~VllpCgH~vfC~~Ci~~~~~ 835 (859)
...|.||++... ..+++||+|+ ||..|...+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFT 219 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHHHHH
Confidence 357999999855 4789999999 99999997764
No 264
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.27 E-value=17 Score=40.74 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002997 642 QSLEAQRVLLREELATEKQK 661 (859)
Q Consensus 642 ka~EkQ~a~LQeEL~~EK~k 661 (859)
..+.+++-.++..|+.+..-
T Consensus 159 e~Lr~EKVdlEn~LE~EQE~ 178 (310)
T PF09755_consen 159 ERLRREKVDLENTLEQEQEA 178 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33333444444444443333
No 265
>PRK10869 recombination and repair protein; Provisional
Probab=93.27 E-value=24 Score=42.61 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=8.8
Q ss_pred CccccccccCCCCCcc
Q 002997 385 GGFVLEKRVRPASDLS 400 (859)
Q Consensus 385 ~s~v~~K~g~~~s~~~ 400 (859)
+++| +.|...+.+.
T Consensus 52 ~~~i--r~g~~~a~Ve 65 (553)
T PRK10869 52 ASMV--RPGATRADLC 65 (553)
T ss_pred cccc--cCCCCcEEEE
Confidence 3566 6677666655
No 266
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.23 E-value=19 Score=43.24 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSL 644 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~ 644 (859)
++...|+.|.+-..++++-...+.+.+.++...+.+++.-+...++..+.+.++..+....++++..+
T Consensus 77 rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~l 144 (514)
T TIGR03319 77 ELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGL 144 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444555555555555555555555555555555555555555555555555555555555554444
No 267
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.22 E-value=1.6 Score=52.13 Aligned_cols=37 Identities=5% Similarity=0.135 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHhhcCCccccc
Q 002997 174 YTMLEMINVLRDVKTSLSIAEAMWWLLMCDLNISQAC 210 (859)
Q Consensus 174 ~sL~glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~A~ 210 (859)
-|+.-|+-|...+.|++=.-|-|.-|...+-+|..-.
T Consensus 37 ~s~~rllrli~~~kpDIvAvDnvyEL~~~~~~li~il 73 (652)
T COG2433 37 VSLRRLLRLIWSYKPDIVAVDNVYELGADKRDLIRIL 73 (652)
T ss_pred hhHHHHHHHHHhcCCCEEEeccHHHHhcChhHHHHHH
Confidence 6777888888888888888888888887666665433
No 268
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.16 E-value=18 Score=40.72 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002997 548 AELKALRHEKQEVEQCQKDKQILEENTVK---RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSA 624 (859)
Q Consensus 548 ~eLk~LR~ekeelq~lkkekq~lee~t~K---rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~ 624 (859)
+..+.||+=.+.++..+.+-+.+.-.+.+ +|-....-+-++.+.....+..++.+++|+..++.++++.+....|..
T Consensus 82 e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke 161 (401)
T PF06785_consen 82 EKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE 161 (401)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH
Confidence 33444555444444444444444444444 555555667777777778888888888888888888877766554444
Q ss_pred HH
Q 002997 625 VS 626 (859)
Q Consensus 625 k~ 626 (859)
.+
T Consensus 162 ee 163 (401)
T PF06785_consen 162 EE 163 (401)
T ss_pred HH
Confidence 33
No 269
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=15 Score=43.61 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002997 550 LKALRHEKQEVEQCQKDKQI 569 (859)
Q Consensus 550 Lk~LR~ekeelq~lkkekq~ 569 (859)
.+.|..++..++..-+..+.
T Consensus 423 i~~le~e~~~y~de~~kaqa 442 (654)
T KOG4809|consen 423 IKQLEKEASYYRDECGKAQA 442 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555543333333
No 270
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.03 E-value=20 Score=41.60 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATE 658 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~E 658 (859)
+..++.+++.++..|..+
T Consensus 284 v~~l~~~i~~l~~~l~~e 301 (444)
T TIGR03017 284 YKRAQAEINSLKSQLNAE 301 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 271
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=0.95 Score=48.49 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=39.8
Q ss_pred CccccccccccCc----CcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 801 RERECVVCLAEEK----SVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 801 ~~~~C~ICle~~~----~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
....|+||.+... .+|+-||||+ ||..|++.+.... ..||+|..+...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D-~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKD-MVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhcccc-ccccCCCCcCccc
Confidence 4568999998744 4677899999 9999999887644 5899999998654
No 272
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.01 E-value=0.028 Score=70.56 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=0.0
Q ss_pred HHHHhhcccHHHHHHHHhHhHH
Q 002997 509 ELILKLVPWVPELQNELNSWTE 530 (859)
Q Consensus 509 e~i~~l~~~v~~L~~~~~e~~~ 530 (859)
+-...+..++.-+..++..|+-
T Consensus 285 e~k~~l~~qlsk~~~El~~~k~ 306 (859)
T PF01576_consen 285 EAKSELERQLSKLNAELEQWKK 306 (859)
T ss_dssp ----------------------
T ss_pred hhHHHHHHHHHHHhhHHHHHHH
Confidence 3444455555555555555543
No 273
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.99 E-value=8.6 Score=38.21 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEM 613 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEm 613 (859)
+...+.+....+++.+..+.+|+.+++..+.++
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433333
No 274
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.95 E-value=32 Score=43.16 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 543 LSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSST 598 (859)
Q Consensus 543 L~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~ 598 (859)
+.+.-+|.-.|+.+.+..-.++ -....++..++.||.....||..+...
T Consensus 19 wekae~e~~~lk~~l~~~~~~~-------~~~e~r~~hld~aLkec~~qlr~~ree 67 (769)
T PF05911_consen 19 WEKAEAEAASLKQQLEAATQQK-------LALEDRVSHLDGALKECMRQLRQVREE 67 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------HHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 3344444445555555444432 233346777777777777776655443
No 275
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.92 E-value=27 Score=42.19 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 002997 551 KALRHEKQEVEQ 562 (859)
Q Consensus 551 k~LR~ekeelq~ 562 (859)
..|+.+.++++.
T Consensus 192 d~L~~ql~ELe~ 203 (563)
T TIGR00634 192 DFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHh
Confidence 334444444444
No 276
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=92.72 E-value=21 Score=40.32 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLR 619 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~ 619 (859)
++..-..+.+||+=-.+.++++|.+...+..+++..+.+
T Consensus 144 LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~R 182 (561)
T KOG1103|consen 144 LEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKR 182 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666655555555554443
No 277
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=34 Score=42.66 Aligned_cols=19 Identities=5% Similarity=0.211 Sum_probs=11.0
Q ss_pred HHHHHhhhhCCCChHHHHH
Q 002997 107 RNVIKQISECGYSEDDATK 125 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~ 125 (859)
+++|.-|+.-|-+....|.
T Consensus 288 Lqivr~lVsP~Nt~~~~~q 306 (970)
T KOG0946|consen 288 LQIVRSLVSPGNTSSITHQ 306 (970)
T ss_pred HHHHHHhcCCCCcHHHHHH
Confidence 4566666666666544443
No 278
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.53 E-value=16 Score=41.15 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.4
Q ss_pred HHHHHHhH
Q 002997 520 ELQNELNS 527 (859)
Q Consensus 520 ~L~~~~~e 527 (859)
.-++|++-
T Consensus 60 ~re~qlk~ 67 (401)
T PF06785_consen 60 RREKQLKT 67 (401)
T ss_pred HHHHHHHH
Confidence 33444443
No 279
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=20 Score=39.46 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=12.4
Q ss_pred CchHHHHHhhcccHHHHHHHHhH
Q 002997 505 NGKDELILKLVPWVPELQNELNS 527 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e 527 (859)
...|..+-.+...+++++++++.
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~ 56 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIES 56 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554
No 280
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=33 Score=42.77 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002997 579 SEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEME 614 (859)
Q Consensus 579 semE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmE 614 (859)
..+..-+...+.|++..++...++..|++++.+++.
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq 695 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQ 695 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555554444443
No 281
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.22 E-value=27 Score=40.41 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 002997 548 AELKALRHEKQEVEQCQK-DKQILEENTVKRLSEME 582 (859)
Q Consensus 548 ~eLk~LR~ekeelq~lkk-ekq~lee~t~KrLsemE 582 (859)
..|+.||.++-.++.+.. +.+-+.+..++++..++
T Consensus 136 rkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Kle 171 (552)
T KOG2129|consen 136 RKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLE 171 (552)
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667766666666433 33344444455444443
No 282
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.15 E-value=13 Score=44.80 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 580 EMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLE 645 (859)
Q Consensus 580 emE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~E 645 (859)
+..++|..++.++.+---.+..||.+.-.+=+|+-..|++.....++-.+..++.|+....++.+.
T Consensus 150 ~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 150 EKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 333444444444444334445555555555555555555555555555555555555544444443
No 283
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.12 E-value=24 Score=39.64 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 626 SCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 626 ~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
.+..+...+..+...|...-..-..+|..|..-..-....+.+++.....+
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~ 253 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKI 253 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333333333333333333333
No 284
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.12 Score=56.35 Aligned_cols=29 Identities=31% Similarity=0.823 Sum_probs=26.1
Q ss_pred CCCchhhhHHhHHHHhhcCCCCCCCccccc
Q 002997 819 PCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 819 pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
+|||. .|..|...+...+...||.|..+.
T Consensus 22 ~C~H~-lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 22 ECGHR-LCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred cccch-HHHHHHHHHHhcCCCCCCcccchh
Confidence 89999 999999988887888999998754
No 285
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.94 E-value=50 Score=42.96 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=22.1
Q ss_pred cccCCCCCCCC-CCCCCCCCCC--CCcCCCCCCchhhhccc
Q 002997 428 ASTRTPLAHPV-SDSPSSLPTK--GTTLALPVPNTELVASS 465 (859)
Q Consensus 428 ~~stk~~~~~~-i~~~~~lq~~--np~~~Lsqd~ar~fLss 465 (859)
++.++..++.. |.+...+-.+ ..+.+|+|.....||..
T Consensus 120 ~~~~~~~~~~~~i~~llGld~~~F~~~~~l~Qg~~~~fl~a 160 (1042)
T TIGR00618 120 ILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFAQFLKA 160 (1042)
T ss_pred ccccchHHHHHHHHHHhCCCHHHHhhheeecccchHHHHhC
Confidence 44444444444 4333333322 23568899999999988
No 286
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.92 E-value=16 Score=37.29 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 594 RSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKV 662 (859)
Q Consensus 594 ra~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL 662 (859)
..+-.+..|...+++=-.++...+.........+.-+.++-..+...+..+..++...++.+...+.++
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l 114 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREEL 114 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443333333333333333333333333333333333333
No 287
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.87 E-value=24 Score=39.22 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002997 545 KDQAELKALRHEKQEVEQCQKDKQILEENTV----KRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRA 620 (859)
Q Consensus 545 ke~~eLk~LR~ekeelq~lkkekq~lee~t~----KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~ 620 (859)
+-..+++.++++-+.+++-.+.+++.-..|. .+|..+...-..++.+++.-+..-.+||+|+.-.+..+.+|-...
T Consensus 28 ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~ 107 (305)
T PF14915_consen 28 KYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDH 107 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444556666666666664444332211111 245555555555666677777777888888888888888876666
Q ss_pred HHHHHH
Q 002997 621 AKSAVS 626 (859)
Q Consensus 621 ~es~k~ 626 (859)
+++.++
T Consensus 108 dqsq~s 113 (305)
T PF14915_consen 108 DQSQTS 113 (305)
T ss_pred HHHHhh
Confidence 555444
No 288
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=91.81 E-value=16 Score=39.22 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 651 LREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENL 693 (859)
Q Consensus 651 LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeL 693 (859)
+++.+...+..+......++..+..+..++.+|.+.+..++.+
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444333
No 289
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.80 E-value=30 Score=40.16 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAA 621 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~ 621 (859)
++..++..-.....-+.+..+...+|+.+.-..-.++|.+.++..
T Consensus 305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 444444444444445555666666666666666666666655443
No 290
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=91.77 E-value=21 Score=38.28 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQ 635 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekEr 635 (859)
.+.+++..|.....++..+...+..+...+..+....+.+.....+....+++|...-.
T Consensus 79 s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 79 SLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888888888888888888888888888888888877777777766533
No 291
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.76 E-value=54 Score=42.98 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=7.2
Q ss_pred hCCCChHHHHHHh
Q 002997 115 ECGYSEDDATKNI 127 (859)
Q Consensus 115 ~~g~~~~~~~~al 127 (859)
+--|++..+++=|
T Consensus 383 HIPYRDSKLTrLL 395 (1320)
T PLN03188 383 HIPYRDSRLTFLL 395 (1320)
T ss_pred cCCCCcchHHHHH
Confidence 4468865544433
No 292
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.75 E-value=0.093 Score=58.17 Aligned_cols=46 Identities=33% Similarity=0.762 Sum_probs=36.9
Q ss_pred CCCccccccccccCcCcEEeCC--CchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 799 LKRERECVVCLAEEKSVVFLPC--AHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 799 l~~~~~C~ICle~~~~~VllpC--gH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
.-+-..||||.+....+++ .| ||. .|..|-.. ...+||.||.+|..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~----~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTK----VSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccce-ecCCCcE-ehhhhhhh----hcccCCcccccccc
Confidence 3455789999999888765 56 899 99999863 34689999999983
No 293
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=91.72 E-value=18 Score=43.01 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=11.9
Q ss_pred cCCCcccccccccc----CcCcEEe-CCCch
Q 002997 798 GLKRERECVVCLAE----EKSVVFL-PCAHQ 823 (859)
Q Consensus 798 ~l~~~~~C~ICle~----~~~~Vll-pCgH~ 823 (859)
.+.....=.||... .-+.|.+ -|+|.
T Consensus 387 ~l~~S~~~~Ir~r~~~~~~~~~vaI~g~~G~ 417 (489)
T PF05262_consen 387 TLKRSPVNGIRGRTFYEREDDLVAIAGCSGN 417 (489)
T ss_pred eecccccceeccceeEEcCCCEEEEeccCCc
Confidence 34444455566543 2233333 36665
No 294
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.72 E-value=0.12 Score=52.01 Aligned_cols=54 Identities=24% Similarity=0.661 Sum_probs=37.9
Q ss_pred ccccccccccCcCcEEeCCCch-h-----hh------HHhHHHHhhc------------------------------CCC
Q 002997 802 ERECVVCLAEEKSVVFLPCAHQ-V-----LC------QKCNELHEKQ------------------------------GMN 839 (859)
Q Consensus 802 ~~~C~ICle~~~~~VllpCgH~-v-----fC------~~Ci~~~~~~------------------------------~~~ 839 (859)
+..|+||++.+.++|+|-|.-. - +| ..|++++.+. ..-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 4689999999999999987421 1 22 3577765430 023
Q ss_pred CCCCccccccCceEEE
Q 002997 840 DCPSCRSPIQQRIQVR 855 (859)
Q Consensus 840 ~CP~CR~~i~~~i~i~ 855 (859)
.||+||..|.+-+.|.
T Consensus 82 ~CPLCRG~V~GWtvve 97 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVE 97 (162)
T ss_pred cCccccCceeceEEch
Confidence 5999999998877663
No 295
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.61 E-value=10 Score=44.04 Aligned_cols=19 Identities=32% Similarity=0.322 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 002997 728 KLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 728 rlkdeIkrLEeELeqLr~k 746 (859)
.+.+.|..|++++..|---
T Consensus 432 s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHhHhee
Confidence 3344455666666655433
No 296
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.57 E-value=52 Score=42.38 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=17.1
Q ss_pred chHHHHHhhcccHHHHHHHHhH
Q 002997 506 GKDELILKLVPWVPELQNELNS 527 (859)
Q Consensus 506 ~k~e~i~~l~~~v~~L~~~~~e 527 (859)
.|+-++-++...+..|+.++.-
T Consensus 401 ~K~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 401 MKKTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888776
No 297
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.50 E-value=32 Score=39.85 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 002997 578 LSEMEFALTNA 588 (859)
Q Consensus 578 LsemE~aL~ka 588 (859)
+.++..++..+
T Consensus 217 l~~l~~~l~~~ 227 (444)
T TIGR03017 217 LNELSAQLVAA 227 (444)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 298
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.49 E-value=42 Score=41.22 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 651 LREELATEKQKVAVLQQEISKAENRHNQLETRW 683 (859)
Q Consensus 651 LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~ 683 (859)
+...|..+..-..++...+.+++..+..++.++
T Consensus 186 lt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~l 218 (617)
T PF15070_consen 186 LTSALQSEQHVKKELQKKLGELQEKLHNLKEKL 218 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333444444444444444444443
No 299
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=91.47 E-value=11 Score=42.00 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=76.1
Q ss_pred HHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 511 ILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATA 590 (859)
Q Consensus 511 i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~ 590 (859)
+.++..+=.+|.+|++- -|.-+++.+ +.-|++.-+++.|..-..+|++....- ....++++....
T Consensus 2 Vdd~QN~N~EL~kQiEI---------cqEENkiLd-----K~hRQKV~EVEKLsqTi~ELEEaiLag-GaaaNavrdYqr 66 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEI---------CQEENKILD-----KMHRQKVLEVEKLSQTIRELEEAILAG-GAAANAVRDYQR 66 (351)
T ss_pred chhhhhhcHHHHHHHHH---------HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 34455555666666655 222222222 235777777777776666666655442 123344555555
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVA 663 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~ 663 (859)
|+. +|..|.-.+..|+.+||..+..-..-...-=+.+.+-..=++.|-.+...||-|+..++.+|+
T Consensus 67 q~~-------elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLA 132 (351)
T PF07058_consen 67 QVQ-------ELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLA 132 (351)
T ss_pred HHH-------HHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 444444444566666666555544433333334555667788999899999999888887775
No 300
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.39 E-value=43 Score=41.14 Aligned_cols=21 Identities=29% Similarity=0.104 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcC
Q 002997 727 SKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 727 qrlkdeIkrLEeELeqLr~k~ 747 (859)
..++..+-.||-+...|..+.
T Consensus 295 ~~l~~~~~~LELeN~~l~tkL 315 (716)
T KOG4593|consen 295 EKLQSTLLGLELENEDLLTKL 315 (716)
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 444455555555555555443
No 301
>PRK00106 hypothetical protein; Provisional
Probab=91.38 E-value=40 Score=40.71 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSL 644 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~ 644 (859)
++...|+.|.+-..++++-...+.+.+.++...+.+++.-+....+..+.+.++..+....++++..+
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~l 165 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAAL 165 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444555555555555555555555555555555555555555555555555555555555555544
No 302
>PLN02939 transferase, transferring glycosyl groups
Probab=91.37 E-value=54 Score=42.21 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=20.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcCc
Q 002997 721 EAEKEMSKLTEDIGKLESQLSLLKYKSD 748 (859)
Q Consensus 721 eaE~elqrlkdeIkrLEeELeqLr~k~~ 748 (859)
+.-...+-+++.+...+.-+..|+...+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 373 EIHSYIQLYQESIKEFQDTLSKLKEESK 400 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5555677778888888888888776643
No 303
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.27 E-value=25 Score=38.24 Aligned_cols=17 Identities=12% Similarity=0.399 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002997 648 RVLLREELATEKQKVAV 664 (859)
Q Consensus 648 ~a~LQeEL~~EK~kL~~ 664 (859)
+-.||++|.+-+.+|.+
T Consensus 280 iliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 280 ILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444333333333
No 304
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.20 E-value=22 Score=37.32 Aligned_cols=11 Identities=36% Similarity=0.455 Sum_probs=5.7
Q ss_pred hhcccHHHHHH
Q 002997 513 KLVPWVPELQN 523 (859)
Q Consensus 513 ~l~~~v~~L~~ 523 (859)
+|+..|.+|+.
T Consensus 5 dL~~~v~dL~~ 15 (193)
T PF14662_consen 5 DLLSCVEDLQL 15 (193)
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 305
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.19 E-value=13 Score=36.26 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELAT 657 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~ 657 (859)
++.|...|+..++++...+..+.+++.+.+.++.|+-..-...++. +....++..++.++..++....+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-----------~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-----------RALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666665554433333222 22233344445555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002997 658 EKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 658 EK~kL~~lqqELEeaK~~veql 679 (859)
.-.=+-+...++++++..+..+
T Consensus 87 ~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 87 LLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHhcchHHHHHHHHHHHHHH
Confidence 4444444445555555555554
No 306
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.14 E-value=0.19 Score=62.12 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHhhcccHHHHHHHHhHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 508 DELILKLVPWVPELQNELNSWTEWANQKV------MQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEM 581 (859)
Q Consensus 508 ~e~i~~l~~~v~~L~~~~~e~~~wa~~k~------~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsem 581 (859)
.+.+..+.-++..|+.++..|.--...-- ...++.|.....+.-.|..+...++-.....+.........+..+
T Consensus 304 ~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l 383 (722)
T PF05557_consen 304 EEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQL 383 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667777777777766554421 233344444333333344443333332222222222222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002997 582 EFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAA 616 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaA 616 (859)
...+..+...+...+..+++|+........|.+..
T Consensus 384 ~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~L 418 (722)
T PF05557_consen 384 LKEIEELEASLEALKKLIRRLERQKALATKERDYL 418 (722)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555544444444444443
No 307
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=36 Score=39.79 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 002997 576 KRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKAL---KNAQSLEAQRVLLR 652 (859)
Q Consensus 576 KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~l---erLka~EkQ~a~LQ 652 (859)
.+|.+|+..|..++.+ +++-+.....++.+++..-.... .+...++|.+-...++ ..+..+-.+-..||
T Consensus 345 ~~IqeleqdL~a~~ee-------i~~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLq 416 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEE-------IESNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQ 416 (521)
T ss_pred HHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544 55556666666666665433222 2333344444333332 33334444555566
Q ss_pred HHHHHHHHHHH
Q 002997 653 EELATEKQKVA 663 (859)
Q Consensus 653 eEL~~EK~kL~ 663 (859)
.++..+..++.
T Consensus 417 kq~ns~se~L~ 427 (521)
T KOG1937|consen 417 KQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHh
Confidence 66666666663
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=0.62 Score=57.17 Aligned_cols=41 Identities=27% Similarity=0.722 Sum_probs=32.9
Q ss_pred ccccccccc-CcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccc
Q 002997 803 RECVVCLAE-EKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 803 ~~C~ICle~-~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
-.|.+|... .-.+|...|||. |=..|.. ....+||-|+...
T Consensus 841 skCs~C~~~LdlP~VhF~CgHs-yHqhC~e----~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHS-YHQHCLE----DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccceeeeecccH-HHHHhhc----cCcccCCccchhh
Confidence 679999876 556678899999 9999988 2457999998743
No 309
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.95 E-value=59 Score=41.90 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhh---hCCCC
Q 002997 103 NTLFRNVIKQIS---ECGYS 119 (859)
Q Consensus 103 ~~~y~~Ai~~l~---~~g~~ 119 (859)
..+|.+||+-|+ -.||-
T Consensus 110 ~d~Y~~~v~p~i~eVl~GyN 129 (1041)
T KOG0243|consen 110 EDLYDQAVSPIIKEVLEGYN 129 (1041)
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 357999999884 34665
No 310
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.91 E-value=44 Score=40.41 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=17.5
Q ss_pred hhhhhcCCCccccCCcccCCccccccccCCCCCccc
Q 002997 366 KSYRTYGKGAFRSGKLASMGGFVLEKRVRPASDLSA 401 (859)
Q Consensus 366 k~~~~lG~kas~tnr~~sl~s~v~~K~g~~~s~~~~ 401 (859)
...=.+||+|+.+ || +.|.+.+++.+
T Consensus 41 Al~lllG~ra~~~--------~V--R~G~~~a~v~a 66 (557)
T COG0497 41 ALGLLLGGRADAS--------LV--RHGAKRAEVEA 66 (557)
T ss_pred HHHHHhCCCCCcc--------hh--cCCCceeEEEE
Confidence 3333578777643 67 88888888764
No 311
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=90.74 E-value=40 Score=39.54 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=22.1
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 519 PELQNELNSWTEWANQKVMQAARRLSKDQAELKALRH 555 (859)
Q Consensus 519 ~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ 555 (859)
.+|+++...||+- -.+-+..+..|.-+++-.+.+-+
T Consensus 277 ~~le~er~~wtE~-ES~WIsLteeLR~dle~~r~~ae 312 (488)
T PF06548_consen 277 EELEQERQRWTEA-ESKWISLTEELRVDLESSRSLAE 312 (488)
T ss_pred hhHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHH
Confidence 4677777888763 33445666666666666655443
No 312
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.74 E-value=50 Score=40.71 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=19.0
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEW 531 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~w 531 (859)
-+-.|+|.-..+.|..|+.++..-.+|
T Consensus 62 sqqaelis~qlqE~rrle~e~~~lre~ 88 (739)
T PF07111_consen 62 SQQAELISRQLQELRRLEEEVRALRET 88 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777765555
No 313
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.73 E-value=50 Score=40.66 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=34.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAEN 674 (859)
Q Consensus 599 vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~ 674 (859)
.+.++..++++..-...+.-...+...++.-...+-+.++-.+...++++..-...+..+-+.+.....++.+...
T Consensus 146 ~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~ 221 (716)
T KOG4593|consen 146 LREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERAD 221 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444333333334444445555555555555555555555444444444333
No 314
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=90.68 E-value=44 Score=39.98 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~ 656 (859)
++..|..+|......+.+ -.+.+.+.++..++.+++..=.-...-.+.-..+.+.-..+...+..++.....|+++|+
T Consensus 256 ~~~~L~~~l~~~~~~l~~--Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie 333 (570)
T COG4477 256 RLERLKEQLVENSELLTQ--LELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIE 333 (570)
T ss_pred HHHHHHHHHHHHHhHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 444455444443333221 123333444444554444422211111111222333333444455555555666666666
Q ss_pred HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 657 TEKQKV----------AVLQQEISKAENRHNQLETRWREERMA 689 (859)
Q Consensus 657 ~EK~kL----------~~lqqELEeaK~~veqlE~r~qeekk~ 689 (859)
..++.- .+.+.+|+++...+..+-..+.....+
T Consensus 334 ~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~ 376 (570)
T COG4477 334 RVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVA 376 (570)
T ss_pred HHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 655543 555566666666666555444443333
No 315
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=90.65 E-value=13 Score=42.88 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQ 647 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ 647 (859)
+..+.++.+.+++..+........++-+++..++++-++.+.++.+....+.+++++-.++.++....+..
T Consensus 7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777778888888888888888888888888888888888777777766664433
No 316
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.57 E-value=22 Score=36.33 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 608 VLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 608 ~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
.++.+......+.++.-.++.++...=.....-+..+...+..+..++...+.+|......+...+..+..+
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555555555555555555555555444444443
No 317
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.56 E-value=29 Score=37.72 Aligned_cols=29 Identities=10% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcCcch
Q 002997 722 AEKEMSKLTEDIGKLESQLSLLKYKSDSS 750 (859)
Q Consensus 722 aE~elqrlkdeIkrLEeELeqLr~k~~s~ 750 (859)
+-..+++++++.+.|.+++.--.+..+.+
T Consensus 162 llesvqRLkdEardlrqelavr~kq~E~p 190 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVRTKQTERP 190 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 33457888888888888776555443433
No 318
>PF13166 AAA_13: AAA domain
Probab=90.46 E-value=53 Score=40.53 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=4.4
Q ss_pred CchhhhHHhHH
Q 002997 821 AHQVLCQKCNE 831 (859)
Q Consensus 821 gH~vfC~~Ci~ 831 (859)
.|..+...-+.
T Consensus 568 THn~~F~~~l~ 578 (712)
T PF13166_consen 568 THNLYFFKELK 578 (712)
T ss_pred eCcHHHHHHHH
Confidence 35543333333
No 319
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.33 E-value=0.24 Score=48.50 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=40.8
Q ss_pred CccccccccccCcCcEEeC----CCchhhhHHhHHHHhhc--CCCCCCCccccccCc
Q 002997 801 RERECVVCLAEEKSVVFLP----CAHQVLCQKCNELHEKQ--GMNDCPSCRSPIQQR 851 (859)
Q Consensus 801 ~~~~C~ICle~~~~~Vllp----CgH~vfC~~Ci~~~~~~--~~~~CP~CR~~i~~~ 851 (859)
.--+|-||.+...+.-|++ ||.. .|..|.-..|+. ....||.|++.|...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3458999999988887774 9988 999999888763 347899999999764
No 320
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=90.30 E-value=46 Score=39.58 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFER 633 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ek 633 (859)
++.+....++....++......+..++.++++++..+++.+....+..+.+.+..++
T Consensus 54 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~ 110 (475)
T PRK10361 54 QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQR 110 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777777777777777777778777776666655554444443
No 321
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.04 E-value=39 Score=38.34 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTL 602 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~L 602 (859)
-.+.+..|..+.-.++.|...+..+
T Consensus 77 ~~~a~~~L~~a~P~L~~A~~al~~l 101 (344)
T PF12777_consen 77 KEEAEEELAEAEPALEEAQEALKSL 101 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555555555555555554444
No 322
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.76 E-value=36 Score=42.23 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 643 SLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQ 696 (859)
Q Consensus 643 a~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaq 696 (859)
.++..+..++......++++..+++++...++....+........+..++.+..
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 277 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKE 277 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555555444444444444444333
No 323
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=89.76 E-value=16 Score=42.47 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~ 656 (859)
-+..|+..++.+...++.-++-+.+||.+.... .+.+...+++++...|++++..++.++++-..+-..|.
T Consensus 144 l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~---------~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~ 214 (447)
T KOG2751|consen 144 LLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV---------SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLK 214 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777776655443 33344455566667777777777777777666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 002997 657 TEKQKVAVLQQEISK 671 (859)
Q Consensus 657 ~EK~kL~~lqqELEe 671 (859)
+.+.+-.++.++..+
T Consensus 215 e~~~~~~~~~e~~~~ 229 (447)
T KOG2751|consen 215 ELEFKAERLNEEEDQ 229 (447)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554444444333
No 324
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.64 E-value=27 Score=41.59 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=38.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 600 HTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAE 673 (859)
Q Consensus 600 r~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK 673 (859)
..++.+++++-.++..+.-+......+|. .++.++...++++..+.++|.....++.++++||+..+
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~-------aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECR-------ALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555555444444433 33444555566666666666666666666666666443
No 325
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.59 E-value=21 Score=43.16 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 635 QKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLE 680 (859)
Q Consensus 635 rk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE 680 (859)
....+++..+++.+..|+.++..++.++.+++++++.++.+++++.
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666666666655555555555543
No 326
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.58 E-value=5.8 Score=41.98 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=4.4
Q ss_pred cccCCCCCc
Q 002997 402 VHPKSGPSK 410 (859)
Q Consensus 402 v~ikn~~~~ 410 (859)
|.+.++...
T Consensus 34 v~lRsGPg~ 42 (206)
T PRK10884 34 TYVRSGPGD 42 (206)
T ss_pred EEEEcCCCC
Confidence 555555433
No 327
>PF14992 TMCO5: TMCO5 family
Probab=89.55 E-value=11 Score=41.56 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002997 579 SEMEFALTNATAQVERSSSTVHTLEMEHSVLKK 611 (859)
Q Consensus 579 semE~aL~ka~~Qlera~a~vr~LE~E~a~lra 611 (859)
..++++-+..=.+|+.++.+++.|+.|+.....
T Consensus 14 Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 14 QRLDEANQSLLQKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333333333444455555555555555555433
No 328
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.51 E-value=29 Score=39.86 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 620 AAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEK 659 (859)
Q Consensus 620 ~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK 659 (859)
+......+.++.++-+.+...+.....++..+.++|+..|
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 329
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.49 E-value=50 Score=38.80 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 721 EAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 721 eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
+++.++...+..+..++..+....-.
T Consensus 295 ~~~~~l~~~~~~l~~a~~~l~~~~I~ 320 (457)
T TIGR01000 295 DLNQKLLELESKIKSLKEDSQKGVIK 320 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 34445666666677777777666544
No 330
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.42 E-value=28 Score=38.20 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=4.4
Q ss_pred HHHHHHHHh
Q 002997 143 IVNDTLSAL 151 (859)
Q Consensus 143 Iv~nt~~~l 151 (859)
|+.-++..|
T Consensus 91 imkk~l~~l 99 (445)
T KOG2891|consen 91 IMKKFLACL 99 (445)
T ss_pred HHHHHHHHh
Confidence 444455554
No 331
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=89.35 E-value=58 Score=39.39 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=31.4
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLS 544 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ 544 (859)
+.-+.+|.....+|..|.+++.+-+.++.+++.++-....
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQR 286 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556788999999999999999988888888765544433
No 332
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=89.32 E-value=0.26 Score=54.11 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=45.1
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEE
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQV 854 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i 854 (859)
+.+...++|.+|.......++.+|+|+.||..|+... ....||.|..-....++|
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcc---cCCccccccccceeeeec
Confidence 5667788999999999999999999999999999832 347899998766555554
No 333
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=89.29 E-value=48 Score=38.38 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 518 VPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQ 564 (859)
Q Consensus 518 v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lk 564 (859)
..+|..+|++ -.|.+|.+.+..-+.+|++++.|..++
T Consensus 256 AeeLRekLqE----------~KalKLkeLleReedVRk~kE~L~dqk 292 (672)
T KOG4722|consen 256 AEELREKLQE----------AKALKLKELLEREEDVRKKKEALKDQK 292 (672)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666 225567777777888888888887753
No 334
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.25 E-value=35 Score=36.76 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=14.3
Q ss_pred HHHHHhhcccHHHHHHHHhH
Q 002997 508 DELILKLVPWVPELQNELNS 527 (859)
Q Consensus 508 ~e~i~~l~~~v~~L~~~~~e 527 (859)
..++..+-.++..+...|+.
T Consensus 4 ~~KL~~i~e~~~~f~~~le~ 23 (247)
T PF06705_consen 4 KSKLASINERFSGFESDLEN 23 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777765
No 335
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.15 E-value=0.32 Score=53.87 Aligned_cols=47 Identities=28% Similarity=0.684 Sum_probs=33.9
Q ss_pred ccccccccc----CcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 803 RECVVCLAE----EKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 803 ~~C~ICle~----~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
..|+.|++. -++..--|||.+ .|..|...+...-...||.||..+..
T Consensus 15 d~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 349999986 222223478999 89999876555455799999997754
No 336
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.12 E-value=0.23 Score=54.59 Aligned_cols=45 Identities=31% Similarity=0.667 Sum_probs=36.8
Q ss_pred cccccccccCcC------cEEeCCCchhhhHHhHHHHhhcCCCCCCCccccc
Q 002997 803 RECVVCLAEEKS------VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 803 ~~C~ICle~~~~------~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
..|-||.+.+.+ |-++.|||. ||..|+..+.......||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 579999886554 456789999 999999988776667899999985
No 337
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.10 E-value=0.12 Score=63.84 Aligned_cols=26 Identities=19% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 665 LQQEISKAENRHNQLETRWREERMAR 690 (859)
Q Consensus 665 lqqELEeaK~~veqlE~r~qeekk~k 690 (859)
++.+++..++++.+++.++..+....
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~ 386 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRA 386 (713)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333
No 338
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.96 E-value=8 Score=40.31 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEK----QKVAVLQ 666 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK----~kL~~lq 666 (859)
+++..+..+..++.+++.++.+++.++..-.+. .....+++++..+++++..|+.++.... ..+..++
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~ 141 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLK 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344444444444444444455555443222222 3334466677777777777777777433 2344555
Q ss_pred HHHHHHHHHHHHH
Q 002997 667 QEISKAENRHNQL 679 (859)
Q Consensus 667 qELEeaK~~veql 679 (859)
+++..++..+..|
T Consensus 142 ~~~~~~~~~anrw 154 (188)
T PF03962_consen 142 EEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444443
No 339
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.84 E-value=26 Score=40.96 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=4.5
Q ss_pred CCCcCCCCC
Q 002997 448 KGTTLALPV 456 (859)
Q Consensus 448 ~np~~~Lsq 456 (859)
||.+.-|.|
T Consensus 285 DnYVhRl~~ 293 (493)
T KOG0804|consen 285 DNYVHRLPQ 293 (493)
T ss_pred chhhhhccc
Confidence 444555555
No 340
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.82 E-value=21 Score=42.17 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 579 SEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLL 651 (859)
Q Consensus 579 semE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~L 651 (859)
..+.+.|.....++.+....+.+|..++..++.+.-...-+..+...-|+.....++.+...++.++.+-+++
T Consensus 215 ~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 215 RSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555544444444333333333333333333443333344443333333
No 341
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=88.68 E-value=14 Score=36.24 Aligned_cols=103 Identities=9% Similarity=0.118 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 002997 574 TVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSC------QEAFEREQKALKNAQSLEAQ 647 (859)
Q Consensus 574 t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~l------qeI~ekErk~lerLka~EkQ 647 (859)
..+.+......|.+++.+|.+.+..+...+.-...-+.++.+|...+.+..... .=.+..-+-...++..|.+.
T Consensus 6 a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~d 85 (136)
T PF11570_consen 6 AERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKD 85 (136)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHH
Confidence 334455555667777777777777766666666666777777766665522221 00111222233455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 648 RVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 648 ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
+...+.++.+-+.++..+..+|...+.-+
T Consensus 86 v~nkq~~l~AA~~~l~~~~~el~~~~~al 114 (136)
T PF11570_consen 86 VQNKQNKLKAAQKELNAADEELNRIQAAL 114 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 66666666666666655555555444444
No 342
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=88.31 E-value=0.53 Score=36.93 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhhcCCcccccc
Q 002997 178 EMINVLRDVKTSLSIAEAMWWLLMCDLNISQACT 211 (859)
Q Consensus 178 glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~A~~ 211 (859)
.+|..|++.||+++....-++|..++.|+..|+.
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~ 36 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAID 36 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 5788999999999999999999999999988875
No 343
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.23 E-value=9.6 Score=39.66 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002997 532 ANQKVMQAARRLSKDQAEL 550 (859)
Q Consensus 532 a~~k~~qaA~rL~ke~~eL 550 (859)
++..++.+..+|.+....+
T Consensus 18 ~~~~li~ay~~L~d~~~~l 36 (194)
T PF08614_consen 18 AFAELIDAYNRLADRTSLL 36 (194)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 3344455555555544333
No 344
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=88.12 E-value=0.55 Score=36.96 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHhhcCCcccccc
Q 002997 177 LEMINVLRDVKTSLSIAEAMWWLLMCDLNISQACT 211 (859)
Q Consensus 177 ~glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~A~~ 211 (859)
..+|..|++.||+++...+.++|..++.|+..|+.
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~ 37 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATIN 37 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 46789999999999999999999999999998875
No 345
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=87.84 E-value=29 Score=42.84 Aligned_cols=20 Identities=0% Similarity=-0.139 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 002997 171 MVDYTMLEMINVLRDVKTSL 190 (859)
Q Consensus 171 l~~~sL~glv~~l~~~~p~l 190 (859)
|=..-++=||+.+.+++||-
T Consensus 428 iYSkLFD~lV~~iNqsiPFe 447 (1259)
T KOG0163|consen 428 IYSKLFDWLVGRINQSIPFE 447 (1259)
T ss_pred HHHHHHHHHHHHhhcccccc
Confidence 33444667777777777764
No 346
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.81 E-value=18 Score=37.81 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAA 621 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~ 621 (859)
++.+++.+...+..+.++....|.+++.....+..+++.++.+++
T Consensus 139 ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 139 KILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555555555555555555444444
No 347
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=87.71 E-value=26 Score=33.43 Aligned_cols=97 Identities=24% Similarity=0.359 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKE 725 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~e 725 (859)
.++...+..|.+-+..+..+...+......+...+..+++.....+..+...+..+....+... ++...+.+...+
T Consensus 7 re~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~----~e~k~~~~k~~e 82 (126)
T PF13863_consen 7 REMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAE----EEKKKKEEKEAE 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555444444444444443321111111111 122233344445
Q ss_pred HhHHHHHHHHHHHHHHHHhhc
Q 002997 726 MSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 726 lqrlkdeIkrLEeELeqLr~k 746 (859)
+..++.+|..++.++..+...
T Consensus 83 i~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544
No 348
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.67 E-value=24 Score=40.52 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=14.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhc
Q 002997 725 EMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 725 elqrlkdeIkrLEeELeqLr~k 746 (859)
.+-+++..|.+|++||.++.-.
T Consensus 329 Plv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 329 PLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3445666677777777776544
No 349
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=87.52 E-value=36 Score=41.57 Aligned_cols=10 Identities=0% Similarity=-0.350 Sum_probs=6.5
Q ss_pred hhHHhHHHHh
Q 002997 825 LCQKCNELHE 834 (859)
Q Consensus 825 fC~~Ci~~~~ 834 (859)
||..|-..||
T Consensus 486 F~~NrRP~Yy 495 (811)
T KOG4364|consen 486 FDKNRRPGYY 495 (811)
T ss_pred hccccCCccc
Confidence 7777765554
No 350
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=0.32 Score=55.25 Aligned_cols=46 Identities=26% Similarity=0.613 Sum_probs=36.4
Q ss_pred cccccccccc-----CcCcEEeCCCchhhhHHhHHHHhhc-CCCCCCCccccc
Q 002997 802 ERECVVCLAE-----EKSVVFLPCAHQVLCQKCNELHEKQ-GMNDCPSCRSPI 848 (859)
Q Consensus 802 ~~~C~ICle~-----~~~~VllpCgH~vfC~~Ci~~~~~~-~~~~CP~CR~~i 848 (859)
...|+||++. ....|.+.|||. |=..|++.|..+ ....||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCChh
Confidence 4689999985 446788999999 999999988742 235799997653
No 351
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.45 E-value=58 Score=39.30 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 636 KALKNAQSLEAQRVLLREELA-TEKQKVAVLQQEISKAENRHNQLETRWRE 685 (859)
Q Consensus 636 k~lerLka~EkQ~a~LQeEL~-~EK~kL~~lqqELEeaK~~veqlE~r~qe 685 (859)
-+...|.....|+-+++.... ..-.++..|+++|++|.+.-.-+..+++.
T Consensus 434 s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K 484 (852)
T KOG4787|consen 434 TTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNK 484 (852)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhH
Confidence 333444444455554444432 23445567777788777776666555443
No 352
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.43 E-value=26 Score=37.79 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=5.8
Q ss_pred cccccccccc
Q 002997 802 ERECVVCLAE 811 (859)
Q Consensus 802 ~~~C~ICle~ 811 (859)
...|..|...
T Consensus 194 MK~C~sC~qq 203 (230)
T PF10146_consen 194 MKTCQSCHQQ 203 (230)
T ss_pred cchhHhHHHH
Confidence 3456666654
No 353
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.33 E-value=71 Score=39.62 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 002997 582 EFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATE--- 658 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~E--- 658 (859)
+.++..+..++....+.+..+...+...+.|.-..+.+++ .++.|.+..= +.-.+-.+..|++.++..++..
T Consensus 615 ~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~----Al~~i~~~~f-a~ID~~Sa~rqIael~~~lE~L~~t 689 (1104)
T COG4913 615 DAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQAN----ALAHIQALNF-ASIDLPSAQRQIAELQARLERLTHT 689 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHhcch-hhcchhhHHHHHHHHHHHHHHhcCC
Confidence 3455566666666666666666666666666554333333 3333333311 1122344455555555444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 659 KQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 659 K~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
..-++-.++.+..++..+..++.+++++-.++-+++.+++
T Consensus 690 ~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lk 729 (1104)
T COG4913 690 QSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLK 729 (1104)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666677777777777777777666666666666554
No 354
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=87.28 E-value=0.14 Score=56.21 Aligned_cols=56 Identities=9% Similarity=0.141 Sum_probs=45.9
Q ss_pred CCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEE
Q 002997 799 LKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQV 854 (859)
Q Consensus 799 l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i 854 (859)
......|.+|+....-+...+|+|.|||..|.......+.+.||+|-..+...+.|
T Consensus 133 ~~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 133 KGATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 35667899999999888899999999999997766555667799998887765544
No 355
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=87.24 E-value=49 Score=35.99 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 651 LREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 651 LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
+...|.....+|..++.-+.++.....+.+.-
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~l 214 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQNKTREAEDL 214 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555444333
No 356
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.16 E-value=38 Score=34.62 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 557 KQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLE 603 (859)
Q Consensus 557 keelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE 603 (859)
+..++.-+.+.=.+.+.+++.+..+...|..+..++...-..+.+|+
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455566666666666666666555555555555554
No 357
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.14 E-value=28 Score=33.20 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 648 RVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIR 701 (859)
Q Consensus 648 ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ek 701 (859)
++.|+..|+.+|....++..+-++++..+..++.+-....+.+.++++++.+..
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443444444444444444333
No 358
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.11 E-value=5.5 Score=42.13 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=19.5
Q ss_pred ccccccccccCCCCCchHHHHHhhcccHHHHHHHHhH
Q 002997 491 GIPFDETLGRYIPQNGKDELILKLVPWVPELQNELNS 527 (859)
Q Consensus 491 ~i~yde~l~~~v~~D~k~e~i~~l~~~v~~L~~~~~e 527 (859)
-|.+++.-.-||+.+.-.. -+-...++..|++|+++
T Consensus 69 ~Vr~~~G~~GWV~~~~Ls~-~p~~~~rlp~le~el~~ 104 (206)
T PRK10884 69 QIRDSKGRTAWIPLKQLST-TPSLRTRVPDLENQVKT 104 (206)
T ss_pred EEEeCCCCEEeEEHHHhcC-CccHHHHHHHHHHHHHH
Confidence 3544444446888764322 12334566677766666
No 359
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=86.93 E-value=26 Score=32.58 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFE-REQKALKNAQSLE 645 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~e-kErk~lerLka~E 645 (859)
+...|..+...++.....+..++.....+....+.++.........+..+.+ ++..++.++....
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~ 70 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQK 70 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555556666666666666666666665555555533333 4555555555543
No 360
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=86.75 E-value=43 Score=34.87 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 647 QRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEM 726 (859)
Q Consensus 647 Q~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~el 726 (859)
|+.........+...+.++..+...+..++..-+..|+.+.+........-..---..=+.....++-...++...|.++
T Consensus 89 QLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL 168 (182)
T PF15035_consen 89 QLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDL 168 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333333444444444444444444445555555555555544333221110000000122233344444555666776
Q ss_pred hHHHHHHHH
Q 002997 727 SKLTEDIGK 735 (859)
Q Consensus 727 qrlkdeIkr 735 (859)
..++.++.+
T Consensus 169 ~~~r~e~~r 177 (182)
T PF15035_consen 169 SDMRAEFAR 177 (182)
T ss_pred HHHHHHHHH
Confidence 666666544
No 361
>PF15556 Zwint: ZW10 interactor
Probab=86.72 E-value=46 Score=35.17 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 607 SVLKKEMEAANLRAAKSAVSCQEAFERE----QKALKNAQSLEAQRVLLREELATEK 659 (859)
Q Consensus 607 a~lraEmEaAKl~~~es~k~lqeI~ekE----rk~lerLka~EkQ~a~LQeEL~~EK 659 (859)
+.-|.++-+||..+.+..+.+++-.+-= ..++-+++...+....|++.++...
T Consensus 55 dtsRqkai~aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlq 111 (252)
T PF15556_consen 55 DTSRQKAIEAKEQWKELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQ 111 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777766665544422 2333344444444445555544443
No 362
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.68 E-value=0.69 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=19.7
Q ss_pred hhHHhHHHHhhcC------------CCCCCCccccccC
Q 002997 825 LCQKCNELHEKQG------------MNDCPSCRSPIQQ 850 (859)
Q Consensus 825 fC~~Ci~~~~~~~------------~~~CP~CR~~i~~ 850 (859)
-|..|+.+|..++ ...||.||++|+-
T Consensus 315 WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 315 WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4889988886533 3579999999863
No 363
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=86.57 E-value=81 Score=37.83 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 714 EEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 714 e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
+..+++.+.+.-...|+++|.-+-+.+..|..+
T Consensus 470 ~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeq 502 (518)
T PF10212_consen 470 NISRLQDELETTRRNYEEQLSMMSEHLASMNEQ 502 (518)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666666666555555544
No 364
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.55 E-value=14 Score=38.51 Aligned_cols=39 Identities=23% Similarity=0.527 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 645 EAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRW 683 (859)
Q Consensus 645 EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~ 683 (859)
.+.+..++.|+.+..-.+..+...+..++.+-.++=.||
T Consensus 143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 143 NKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333333333
No 365
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.51 E-value=49 Score=39.36 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002997 582 EFALTNATAQVERSSSTVHTLE 603 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE 603 (859)
...|+.++.|+......+..+.
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt 225 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKT 225 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333
No 366
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=86.47 E-value=85 Score=37.98 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=13.8
Q ss_pred HHHHHHHhhh---hCCCChHHHHHHhhhcc
Q 002997 105 LFRNVIKQIS---ECGYSEDDATKNIARHS 131 (859)
Q Consensus 105 ~y~~Ai~~l~---~~g~~~~~~~~all~ag 131 (859)
.|..|+..|+ ..||-.++.+-+=-.+|
T Consensus 66 Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sG 95 (607)
T KOG0240|consen 66 VYEFAAKPIVDDVLLGYNGTVFAYGQTGSG 95 (607)
T ss_pred HHHHHHHHHHHHHhcccceeEEEecCCCCC
Confidence 4555655553 34776554444334444
No 367
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.28 E-value=32 Score=37.96 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 600 HTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVL 665 (859)
Q Consensus 600 r~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~l 665 (859)
+.-+.||.+++.++-+.+..+ ...+|.+|..+-. ||..+++|..|++-|++.+..|...
T Consensus 85 ~dRetEI~eLksQL~RMrEDW--IEEECHRVEAQLA-----LKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 85 HDRETEIDELKSQLARMREDW--IEEECHRVEAQLA-----LKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhchh
Confidence 334445555555554433222 3355665544333 6666777777777777766666443
No 368
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=86.21 E-value=21 Score=33.23 Aligned_cols=10 Identities=10% Similarity=-0.067 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 002997 579 SEMEFALTNA 588 (859)
Q Consensus 579 semE~aL~ka 588 (859)
..+++.+.++
T Consensus 27 ~~lE~k~~rl 36 (96)
T PF08647_consen 27 TILEQKKLRL 36 (96)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 369
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.04 E-value=11 Score=38.36 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEME 614 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmE 614 (859)
.+..|+..|..+..++...+..+..|+.++..+...+-
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t 110 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT 110 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56677777777777777777777777766666665553
No 370
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=85.78 E-value=46 Score=37.71 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLE 603 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE 603 (859)
+++++..+..+++.++..+..+.
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr 197 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQ 197 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 371
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.63 E-value=10 Score=37.26 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002997 553 LRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLK 610 (859)
Q Consensus 553 LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lr 610 (859)
|-.+++.+.....+..++.+.+.+++.++..-+......++..+..|+-|+..+..++
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555556666667777777777777777777777777777777666554
No 372
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=85.63 E-value=0.51 Score=52.36 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=39.3
Q ss_pred CCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCccccc--cCceEEE
Q 002997 800 KRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPI--QQRIQVR 855 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i--~~~i~i~ 855 (859)
.....|+||+....++..+ --|.+ ||..|+-.+.. ....||+-..|. ++.+++|
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CccccChhHHhccCCCceEEecceE-EeHHHHHHHHH-hcCCCCccCCcchHHHHHHHh
Confidence 4556899999986665444 45776 99999998887 558999866664 4445554
No 373
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.54 E-value=1e+02 Score=38.03 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=6.0
Q ss_pred CCchhhhHHhHHH
Q 002997 820 CAHQVLCQKCNEL 832 (859)
Q Consensus 820 CgH~vfC~~Ci~~ 832 (859)
++|+|++..|-..
T Consensus 603 ~~~QvIils~d~e 615 (650)
T TIGR03185 603 ASHQVLLLSTDEE 615 (650)
T ss_pred cCCeEEEEechHh
Confidence 3455444444443
No 374
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=85.50 E-value=50 Score=34.65 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 643 SLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 643 a~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
.++.|++-++..|..-+.++.+|+..|+-++.+..++
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~v 145 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQV 145 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666667777777777777776665555444
No 375
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=85.49 E-value=56 Score=35.03 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 628 QEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWRE 685 (859)
Q Consensus 628 qeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qe 685 (859)
.++..+-.+....+..|..++......+........+.+.++.+++..+.++..++..
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444455555666666666666666666666666666666666666666555543
No 376
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=85.43 E-value=69 Score=35.98 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcCcchHHHHhcccCCC
Q 002997 718 IKLEAEKEMSKLTEDIGKLESQLSLLKYKSDSSKIAALRGSVDG 761 (859)
Q Consensus 718 ~r~eaE~elqrlkdeIkrLEeELeqLr~k~~s~~iaaL~~~~d~ 761 (859)
++.+.-..+...++-|.-|+.++..-+.. -..-+..|.+.+|.
T Consensus 184 ~k~~~t~~le~qk~tv~~Leaev~~~K~~-Y~~slrnLE~ISd~ 226 (426)
T KOG2008|consen 184 LKAKYTVQLEQQKKTVDDLEAEVTLAKGE-YKMSLRNLEMISDE 226 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHH
Confidence 33444455556666666777766554433 33334456555553
No 377
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.42 E-value=49 Score=36.49 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=6.6
Q ss_pred HHHHhhcccHH
Q 002997 509 ELILKLVPWVP 519 (859)
Q Consensus 509 e~i~~l~~~v~ 519 (859)
++|.+++..++
T Consensus 129 e~Lc~IIqeLq 139 (269)
T PF05278_consen 129 ECLCDIIQELQ 139 (269)
T ss_pred HHHHHHHHHHh
Confidence 66666665554
No 378
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=85.32 E-value=1.2e+02 Score=38.56 Aligned_cols=44 Identities=25% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 572 ENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 572 e~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
-.+++.+.++.+....++.|+.+.....+.++...+.+-+..|.
T Consensus 616 ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~ 659 (984)
T COG4717 616 LSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEA 659 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 56777777777777777777777777777776655555555443
No 379
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=85.19 E-value=74 Score=36.14 Aligned_cols=122 Identities=19% Similarity=0.164 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLR-AAKSAVSCQEAFEREQKALKNAQSLEAQR---VLLR 652 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~-~~es~k~lqeI~ekErk~lerLka~EkQ~---a~LQ 652 (859)
..+.+.++|+=-..+...++-+..+++..+.+.+...+..-+- ..+-.+.+....+...++-+-...++++. ....
T Consensus 147 EReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~e 226 (561)
T KOG1103|consen 147 EREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGE 226 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCCh
Confidence 3444444444444455555555555555555555544443211 11222222222333333322222233322 2344
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 653 EELATEKQKV----AVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 653 eEL~~EK~kL----~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
+++..++++- ++....+++...+.+.+.+.+..+.+...-+..+++
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEme 276 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEME 276 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444432 333344444555555554444444444444444444
No 380
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=85.08 E-value=44 Score=35.04 Aligned_cols=47 Identities=30% Similarity=0.350 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 623 SAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEI 669 (859)
Q Consensus 623 s~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqEL 669 (859)
....-+++..+++...+...+++.+....+..|....+.+..|+.+.
T Consensus 138 ~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 138 ARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555566666666666666666665555555555555444443
No 381
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=0.41 Score=56.93 Aligned_cols=38 Identities=32% Similarity=0.681 Sum_probs=30.7
Q ss_pred Ccccccccccc----CcCcEEeCCCchhhhHHhHHHHhhcCCCCCC
Q 002997 801 RERECVVCLAE----EKSVVFLPCAHQVLCQKCNELHEKQGMNDCP 842 (859)
Q Consensus 801 ~~~~C~ICle~----~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP 842 (859)
.-+.|.||+.. ...+|++-|||. .|..|++..+. ..||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhh---ccCC
Confidence 34679999765 456889999999 99999998774 5787
No 382
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.89 E-value=27 Score=44.05 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 002997 169 QQMVDYTMLEMINVLRDVKTSL 190 (859)
Q Consensus 169 ~~l~~~sL~glv~~l~~~~p~l 190 (859)
.+.+.+.|..|...+..+.+.|
T Consensus 244 ~~~~~~il~~l~~~i~~~~~~l 265 (782)
T PRK00409 244 EQEIERILKELSAKVAKNLDFL 265 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666655543
No 383
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=84.81 E-value=12 Score=35.11 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002997 582 EFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLR 619 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~ 619 (859)
+.++..++.+++.....+.+++..+..+..+|...+.+
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555444443
No 384
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=84.79 E-value=1.2e+02 Score=38.09 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEAANLRAAK 622 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEaAKl~~~e 622 (859)
|++.|-+ ++-|-.|++.+|.++-....+..|
T Consensus 382 q~EIALA-~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 382 QVEIALA-MQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhHhh-hhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4444433 556666666666666555444443
No 385
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=84.75 E-value=0.29 Score=60.56 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVAVLQQE 668 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~~lqqE 668 (859)
.++..++.++...+..+..++.+
T Consensus 185 ~~~~~l~~e~~~l~~~le~~~~~ 207 (722)
T PF05557_consen 185 SQIQSLESELEELKEQLEELQSE 207 (722)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333333
No 386
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=84.72 E-value=95 Score=37.02 Aligned_cols=27 Identities=0% Similarity=-0.024 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002997 582 EFALTNATAQVERSSSTVHTLEMEHSV 608 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE~E~a~ 608 (859)
+..+.....++..+.+....++..++.
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~l~~~le~ 92 (475)
T PRK10361 66 NNEVRSLQSINTSLEADLREVTTRMEA 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 387
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.66 E-value=0.22 Score=60.24 Aligned_cols=53 Identities=28% Similarity=0.624 Sum_probs=42.2
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHh--hcCCCCCCCcccccc
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHE--KQGMNDCPSCRSPIQ 849 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~--~~~~~~CP~CR~~i~ 849 (859)
+..+....+|+||......++.+.|.|. ||..|..... ......||+|+..+.
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HHHHhhhccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhh
Confidence 4566778899999999999999999999 9999988332 233467999986543
No 388
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=84.64 E-value=26 Score=44.16 Aligned_cols=19 Identities=0% Similarity=0.018 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 002997 170 QMVDYTMLEMINVLRDVKT 188 (859)
Q Consensus 170 ~l~~~sL~glv~~l~~~~p 188 (859)
+.+.+.|..|...+....+
T Consensus 240 ~e~~~il~~L~~~i~~~~~ 258 (771)
T TIGR01069 240 CEIEKILRTLSEKVQEYLL 258 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444
No 389
>PRK10869 recombination and repair protein; Provisional
Probab=84.63 E-value=1e+02 Score=37.36 Aligned_cols=10 Identities=20% Similarity=0.414 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 002997 553 LRHEKQEVEQ 562 (859)
Q Consensus 553 LR~ekeelq~ 562 (859)
|+-+.++++.
T Consensus 190 l~fql~Ei~~ 199 (553)
T PRK10869 190 LQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 390
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.59 E-value=92 Score=38.02 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 643 SLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 643 a~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
.+..+.-..+..+..-+.+++.+++++++...++..+..+
T Consensus 221 e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~ 260 (861)
T KOG1899|consen 221 EVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRT 260 (861)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHH
Confidence 3344444444555555555555666665555555444333
No 391
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=84.51 E-value=78 Score=35.87 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKV 662 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL 662 (859)
+..++.++..++..|..+..++
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444443
No 392
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=84.05 E-value=1.1 Score=44.08 Aligned_cols=50 Identities=22% Similarity=0.587 Sum_probs=36.1
Q ss_pred CccccccccccC---cCcEEeCCC------chhhhHHhHHHHhhcCCCCCCCccccccCceEEEec
Q 002997 801 RERECVVCLAEE---KSVVFLPCA------HQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRFA 857 (859)
Q Consensus 801 ~~~~C~ICle~~---~~~VllpCg------H~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~~ 857 (859)
...+|.||++.- ..+|.++|| |+ ||..|+..|..... |=||...|+-||+
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~~~~------rDPfnR~I~y~F~ 83 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRRERN------RDPFNRNIKYWFN 83 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHhhcc------CCCcccceEEEEe
Confidence 367899999972 468888998 55 99999998843221 3466666776664
No 393
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=83.81 E-value=49 Score=36.61 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=7.8
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 599 vr~LE~E~a~lraEmEaAKl 618 (859)
+..++.++...+++++.++.
T Consensus 103 ~~~~~~~i~~~~~~~~~a~~ 122 (334)
T TIGR00998 103 VQQLQAKVESLKIKLEQARE 122 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333
No 394
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=83.59 E-value=62 Score=33.96 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 669 ISKAENRHNQLETRWREERMA 689 (859)
Q Consensus 669 LEeaK~~veqlE~r~qeekk~ 689 (859)
|+.++++++.+..++...+..
T Consensus 146 LeaAk~Rve~L~~QL~~Ar~D 166 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAARAD 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333
No 395
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.58 E-value=0.83 Score=51.69 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=33.1
Q ss_pred ccccccccccCc---CcE-EeCCCchhhhHHhHHHHhhcCC--CCCCCcccccc
Q 002997 802 ERECVVCLAEEK---SVV-FLPCAHQVLCQKCNELHEKQGM--NDCPSCRSPIQ 849 (859)
Q Consensus 802 ~~~C~ICle~~~---~~V-llpCgH~vfC~~Ci~~~~~~~~--~~CP~CR~~i~ 849 (859)
...|.||.+-+- +.. +-.|||. |=..|+.+|..... +.||+|+-...
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred cceeeEeccCCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceeeccc
Confidence 357999965422 222 3359999 99999999986432 58999994443
No 396
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.51 E-value=3.7 Score=40.40 Aligned_cols=27 Identities=22% Similarity=0.714 Sum_probs=20.3
Q ss_pred CCCcccccccccc-CcCcEEeCCCchhhhHHhHH
Q 002997 799 LKRERECVVCLAE-EKSVVFLPCAHQVLCQKCNE 831 (859)
Q Consensus 799 l~~~~~C~ICle~-~~~~VllpCgH~vfC~~Ci~ 831 (859)
...+..|-||... |.+ -|||. |.+|..
T Consensus 62 v~ddatC~IC~KTKFAD----G~GH~--C~YCq~ 89 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD----GCGHN--CSYCQT 89 (169)
T ss_pred cCcCcchhhhhhccccc----ccCcc--cchhhh
Confidence 3566789999964 666 58998 777755
No 397
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=83.39 E-value=56 Score=33.33 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 545 KDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEF 583 (859)
Q Consensus 545 ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~ 583 (859)
....++..|+...+.+..+....+.+......++..++.
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed 85 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELED 85 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666555555555545555554443
No 398
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=83.25 E-value=1.1e+02 Score=36.72 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002997 543 LSKDQAELKALRHEKQEVEQ---CQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLR 619 (859)
Q Consensus 543 L~ke~~eLk~LR~ekeelq~---lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~ 619 (859)
|.+....+..|..+.+.++. +-...........++|.+++..++.+.++++........+......++..++..+..
T Consensus 318 l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~ 397 (570)
T COG4477 318 LEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDE 397 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhh
Confidence 45555555566666666666 333344445566678888888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 620 AAKSAVSCQEAFEREQKALKNAQSLEAQRVL 650 (859)
Q Consensus 620 ~~es~k~lqeI~ekErk~lerLka~EkQ~a~ 650 (859)
.......+..+.+.|.++.+.+..+.+++..
T Consensus 398 q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e 428 (570)
T COG4477 398 QEKVQEHLTSLRKDELEARENLERLKSKLHE 428 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888888888877777766654
No 399
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.11 E-value=1.7 Score=53.92 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=29.2
Q ss_pred ccCCCcccccccccc--CcCcEEeCCCchhhhHHhHHHHh
Q 002997 797 GGLKRERECVVCLAE--EKSVVFLPCAHQVLCQKCNELHE 834 (859)
Q Consensus 797 e~l~~~~~C~ICle~--~~~~VllpCgH~vfC~~Ci~~~~ 834 (859)
.-++....|-+|... -+.-++.||||. |=..|+....
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~-FH~~Cl~~~v 850 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHC-FHRDCLIRHV 850 (911)
T ss_pred EEecCccchHHhcchhhcCcceeeeccch-HHHHHHHHHH
Confidence 455777899999987 445567799999 9999988553
No 400
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=83.01 E-value=82 Score=34.94 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=12.0
Q ss_pred HhHHHHHHHHHHHHHHHHh
Q 002997 726 MSKLTEDIGKLESQLSLLK 744 (859)
Q Consensus 726 lqrlkdeIkrLEeELeqLr 744 (859)
.+..+.++..++++|..|+
T Consensus 279 ~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 279 KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3445666777777777764
No 401
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=82.91 E-value=97 Score=36.25 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 663 AVLQQEISKAENRHNQLETRWREER 687 (859)
Q Consensus 663 ~~lqqELEeaK~~veqlE~r~qeek 687 (859)
..++..|.+....+.+...||+|.+
T Consensus 400 leak~al~evtt~lrErl~RWqQIE 424 (575)
T KOG4403|consen 400 LEAKSALSEVTTLLRERLHRWQQIE 424 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444344444433
No 402
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=82.81 E-value=1.1 Score=49.35 Aligned_cols=55 Identities=31% Similarity=0.608 Sum_probs=37.6
Q ss_pred CCcccccccccc-------------------CcCcEEeCCCchhhhHHhHHHHhhcC---------CCCCCCccccccC-
Q 002997 800 KRERECVVCLAE-------------------EKSVVFLPCAHQVLCQKCNELHEKQG---------MNDCPSCRSPIQQ- 850 (859)
Q Consensus 800 ~~~~~C~ICle~-------------------~~~~VllpCgH~vfC~~Ci~~~~~~~---------~~~CP~CR~~i~~- 850 (859)
..+++|++|+.. +-.-.|.||||+ |.+=.-.+|.+- ...||.|-+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 457899999873 123456899997 777666777531 2469999988743
Q ss_pred --ceEEEe
Q 002997 851 --RIQVRF 856 (859)
Q Consensus 851 --~i~i~~ 856 (859)
.|++.|
T Consensus 417 ~~~ikliF 424 (429)
T KOG3842|consen 417 QGYIKLIF 424 (429)
T ss_pred CceEEEEE
Confidence 466655
No 403
>PTZ00491 major vault protein; Provisional
Probab=82.74 E-value=1.2e+02 Score=38.59 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002997 558 QEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAK 622 (859)
Q Consensus 558 eelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~e 622 (859)
-.|++++-..+.-++.+++.|-+++..-..+...=...-.+..+.|+.+-+-+++++.|++++..
T Consensus 681 g~Lerqk~~d~~~aE~~r~~llel~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a 745 (850)
T PTZ00491 681 GRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKA 745 (850)
T ss_pred chhHHHhhhhHHHHHHHHHHHHHHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHH
Confidence 34555555555666677777666665444433222222222333344444555666666655543
No 404
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=82.71 E-value=0.39 Score=52.78 Aligned_cols=44 Identities=25% Similarity=0.596 Sum_probs=29.4
Q ss_pred ccccccccc-CcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 803 RECVVCLAE-EKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 803 ~~C~ICle~-~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
..|--|--. ..---++||-|. ||..|+.... .+-||.|--+|..
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~---dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHV-FCLECARSDS---DKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcceeeecccccchh-hhhhhhhcCc---cccCcCcccHHHH
Confidence 356666432 112235799999 9999998432 3679999877653
No 405
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.61 E-value=1.5e+02 Score=37.79 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=10.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 002997 598 TVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 598 ~vr~LE~E~a~lraEmEaAKl 618 (859)
.+..++.|...++.|+.....
T Consensus 517 e~~~le~E~~~l~~el~~~~~ 537 (913)
T KOG0244|consen 517 EKSPLESERSRLRNELNVFNR 537 (913)
T ss_pred HhcccccccHHHHHHHHhhhH
Confidence 344455555555555544433
No 406
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=82.44 E-value=60 Score=36.48 Aligned_cols=12 Identities=17% Similarity=0.075 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 002997 731 EDIGKLESQLSL 742 (859)
Q Consensus 731 deIkrLEeELeq 742 (859)
..+...+..++.
T Consensus 197 a~l~~a~~~l~~ 208 (346)
T PRK10476 197 AALAIAELHLED 208 (346)
T ss_pred HHHHHHHHHhhc
Confidence 334444444443
No 407
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=82.39 E-value=0.62 Score=44.80 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 642 QSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENL 693 (859)
Q Consensus 642 ka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeL 693 (859)
..+..++..|..++...+.++..++.++.+++.....+...+....+..+++
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~ 79 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEI 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHH
Confidence 3334444444444444444444444444444444444443333333333333
No 408
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=82.19 E-value=69 Score=35.44 Aligned_cols=10 Identities=10% Similarity=-0.070 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 002997 732 DIGKLESQLS 741 (859)
Q Consensus 732 eIkrLEeELe 741 (859)
++..++..+.
T Consensus 194 ~l~~a~~~l~ 203 (334)
T TIGR00998 194 RLKTAWLALK 203 (334)
T ss_pred HHHHHHHHhh
Confidence 3444444343
No 409
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.13 E-value=0.57 Score=50.69 Aligned_cols=49 Identities=22% Similarity=0.501 Sum_probs=37.5
Q ss_pred CCccccccccccCc----------CcEEeCCCchhhhHHhHHHHhhcC-CCCCCCcccccc
Q 002997 800 KRERECVVCLAEEK----------SVVFLPCAHQVLCQKCNELHEKQG-MNDCPSCRSPIQ 849 (859)
Q Consensus 800 ~~~~~C~ICle~~~----------~~VllpCgH~vfC~~Ci~~~~~~~-~~~CP~CR~~i~ 849 (859)
.++..|.||-...- +.-.+.|+|. |=..||.-|.-.+ ..+||.|...+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhh
Confidence 45678999987633 2346899999 9999999887544 358999988764
No 410
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=82.12 E-value=2.9 Score=38.47 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=24.7
Q ss_pred CCCccccccccccCc--CcEEeCCCchhhhHHhHH
Q 002997 799 LKRERECVVCLAEEK--SVVFLPCAHQVLCQKCNE 831 (859)
Q Consensus 799 l~~~~~C~ICle~~~--~~VllpCgH~vfC~~Ci~ 831 (859)
+.....|.+|..... ..++.||||. |...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 345677999999854 4556799999 8999964
No 411
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.12 E-value=43 Score=31.12 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVS 626 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~ 626 (859)
.|..|+.+...+..++......+..+|..+..+..+...+..++-...+.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~ 53 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRS 53 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777777777777777777777777776666555554444
No 412
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.07 E-value=55 Score=40.92 Aligned_cols=24 Identities=4% Similarity=0.263 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEM 604 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~ 604 (859)
++++|..+..+++.++..+..+..
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 413
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=82.05 E-value=82 Score=34.27 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEIS 670 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELE 670 (859)
||.+..-.+=....+|..+-.|+..++........+++=|...++++-..+..+|++.....-... +.+...|.+
T Consensus 100 qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~-----~~~~D~eR~ 174 (254)
T KOG2196|consen 100 QVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTY-----LSRADVERE 174 (254)
T ss_pred HHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh-----hhhhhHHHH
Confidence 444444444445555555666666655555555555555555555555555555555544222111 233344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q 002997 671 KAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 671 eaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k~ 747 (859)
++-...+.+-.++...-..+..++.++....+-...-. --..+..+....-..++.+.+..-.+++.++.+++..
T Consensus 175 qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~--~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 175 QTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTD--PIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCC--chHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 44445555555555555555555555442222111100 0011222333444567777777777777777776653
No 414
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=82.04 E-value=1.7 Score=35.46 Aligned_cols=41 Identities=24% Similarity=0.618 Sum_probs=30.9
Q ss_pred ccccccc--cCcCcEEeCCC-----chhhhHHhHHHHhhcC-CCCCCCcc
Q 002997 804 ECVVCLA--EEKSVVFLPCA-----HQVLCQKCNELHEKQG-MNDCPSCR 845 (859)
Q Consensus 804 ~C~ICle--~~~~~VllpCg-----H~vfC~~Ci~~~~~~~-~~~CP~CR 845 (859)
.|.||++ ...++.+.||. |. +=..|+..|.... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 56677889994 44 5569999988643 45799995
No 415
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=81.97 E-value=1.1e+02 Score=35.48 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002997 607 SVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQR-VLLREELATEKQKVAVLQQEIS 670 (859)
Q Consensus 607 a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~-a~LQeEL~~EK~kL~~lqqELE 670 (859)
+.+...+|..|.++..-++-+.+..++||=-.+++...-..+ ..-|.||...|++++-+...++
T Consensus 277 ~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva 341 (455)
T KOG3850|consen 277 ALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555566666664444444443333 2336677777777665555543
No 416
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=81.90 E-value=26 Score=39.77 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 636 KALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 636 k~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
.-+.+|.....++..|+.+|...+-.|.+.+++.++.-..+
T Consensus 5 ~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 5 NGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888887777777766666655544443
No 417
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.89 E-value=12 Score=44.67 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRW 683 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~ 683 (859)
+..+|...++|+.+|+....+++++++.+.+++.++.+++..+
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 3444445555555555555555555555555555554444333
No 418
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=81.71 E-value=0.54 Score=51.55 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=34.7
Q ss_pred CccccccccccCcC---cEEeCCCchhhhHHhHHHHhh-----------------cC-----CCCCCCcccccc
Q 002997 801 RERECVVCLAEEKS---VVFLPCAHQVLCQKCNELHEK-----------------QG-----MNDCPSCRSPIQ 849 (859)
Q Consensus 801 ~~~~C~ICle~~~~---~VllpCgH~vfC~~Ci~~~~~-----------------~~-----~~~CP~CR~~i~ 849 (859)
....|+||+.-+.+ .+.++|.|+ |=..|+..+.. +. ...||+||-+|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 44679999987654 456799999 88889776542 01 135999999874
No 419
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.70 E-value=16 Score=32.25 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=11.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 002997 602 LEMEHSVLKKEMEAANLRAAKSAVS 626 (859)
Q Consensus 602 LE~E~a~lraEmEaAKl~~~es~k~ 626 (859)
|+++++.++..++.+..+..-....
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~ 27 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIE 27 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444333
No 420
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=81.42 E-value=23 Score=45.86 Aligned_cols=17 Identities=0% Similarity=0.100 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002997 168 LQQMVDYTMLEMINVLRD 185 (859)
Q Consensus 168 l~~l~~~sL~glv~~l~~ 185 (859)
+..|..-.|.|| .||..
T Consensus 120 Il~Ia~QIL~AL-aYLHs 136 (1021)
T PTZ00266 120 IVDITRQLLHAL-AYCHN 136 (1021)
T ss_pred HHHHHHHHHHHH-HHHHh
Confidence 444444444444 56665
No 421
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=81.27 E-value=1.1e+02 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.091 Sum_probs=26.1
Q ss_pred HHHHHHHhHHHHHHHHHHhh-hhC----CCC--hHHHHHHhh-hcccccCCCCchhhH
Q 002997 94 LGELLSSGLNTLFRNVIKQI-SEC----GYS--EDDATKNIA-RHSIYCGGKDLVSNI 143 (859)
Q Consensus 94 L~~~Ll~~i~~~y~~Ai~~l-~~~----g~~--~~~~~~all-~ag~cyG~~dpvsNI 143 (859)
=+=+|-+.-..+|++-++.- +.+ .++ .++..-++. .-|+|.|..|-|+-+
T Consensus 38 ~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a~q~nY~~~i~~~~~~~tL 95 (593)
T KOG4807|consen 38 HWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYTL 95 (593)
T ss_pred HHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHHHHhccceeecccchhhhh
Confidence 34455555566777665542 111 111 122333343 347999999887644
No 422
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=81.27 E-value=81 Score=36.32 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 002997 586 TNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSL-EAQRVLLREELATEKQKVAV 664 (859)
Q Consensus 586 ~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~-EkQ~a~LQeEL~~EK~kL~~ 664 (859)
.++..=.......|.+...|++.++.+...++.......+....+.++-..--.++++. -+|-...-+|-++.+.+-..
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 665 LQQEISKAENRHNQLETRWREERMARENLLA 695 (859)
Q Consensus 665 lqqELEeaK~~veqlE~r~qeekk~kEeLla 695 (859)
+..+|++.+++++++..++.-...+++.-..
T Consensus 361 L~keLeekkreleql~~q~~v~~saLdtCik 391 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQLAVKTSALDTCIK 391 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
No 423
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=81.23 E-value=76 Score=38.91 Aligned_cols=12 Identities=8% Similarity=-0.266 Sum_probs=7.1
Q ss_pred CCCCccccccCc
Q 002997 840 DCPSCRSPIQQR 851 (859)
Q Consensus 840 ~CP~CR~~i~~~ 851 (859)
.|-.||.+|-++
T Consensus 486 F~~NrRP~YyGT 497 (811)
T KOG4364|consen 486 FDKNRRPGYYGT 497 (811)
T ss_pred hccccCCccccc
Confidence 466677666443
No 424
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=81.20 E-value=73 Score=33.15 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002997 585 LTNATAQVERSSSTVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 585 L~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl 618 (859)
-..+..|+..|++.-..||.+++-++.-++.|+.
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~ 92 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEK 92 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777788888777777777766554
No 425
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=80.99 E-value=49 Score=36.89 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 002997 659 KQKVAVLQQEISKAE 673 (859)
Q Consensus 659 K~kL~~lqqELEeaK 673 (859)
+.++...+.+++.++
T Consensus 151 ~~~~~~a~~~~~~a~ 165 (331)
T PRK03598 151 RSSRDQAQATLKSAQ 165 (331)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 426
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=80.88 E-value=28 Score=44.98 Aligned_cols=7 Identities=29% Similarity=0.563 Sum_probs=3.3
Q ss_pred CCCcccC
Q 002997 279 SETLKFG 285 (859)
Q Consensus 279 ~~~~~~~ 285 (859)
+--|.||
T Consensus 224 SDVWSLG 230 (1021)
T PTZ00266 224 SDMWALG 230 (1021)
T ss_pred hHHHHHH
Confidence 3445554
No 427
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.79 E-value=1.1 Score=51.01 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=41.8
Q ss_pred CCcccccccccc---CcCcEEeCCCchhhhHHhHHHHhhcCC--CCCCCcccccc--CceEEEe
Q 002997 800 KRERECVVCLAE---EKSVVFLPCAHQVLCQKCNELHEKQGM--NDCPSCRSPIQ--QRIQVRF 856 (859)
Q Consensus 800 ~~~~~C~ICle~---~~~~VllpCgH~vfC~~Ci~~~~~~~~--~~CP~CR~~i~--~~i~i~~ 856 (859)
-....|||=.+. .-.|+.+.|||+ .|..-+.....++. .+||.|-.... ...+|||
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 455689998765 456888999999 99999998887666 68999976542 3345544
No 428
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.71 E-value=95 Score=34.16 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHHHHHHhhc
Q 002997 726 MSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 726 lqrlkdeIkrLEeELeqLr~k 746 (859)
+...++.|..++++|..|+..
T Consensus 195 i~~~re~i~el~e~I~~L~~e 215 (258)
T PF15397_consen 195 IVQFREEIDELEEEIPQLRAE 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555444
No 429
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=80.64 E-value=1.6e+02 Score=36.84 Aligned_cols=24 Identities=25% Similarity=0.090 Sum_probs=13.7
Q ss_pred cccCC-CCchhhHHHHHHHHhhhcC
Q 002997 132 IYCGG-KDLVSNIVNDTLSALEKVK 155 (859)
Q Consensus 132 ~cyG~-~dpvsNIv~nt~~~l~~~~ 155 (859)
|-|-| .||=-||---.+.||..|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (762)
T PLN03229 62 HEYPWPADPDPNVKGGVLSYLSHFK 86 (762)
T ss_pred cCCCCCCCCCCCcccchhhHhhccC
Confidence 44554 4555566666666666554
No 430
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=80.55 E-value=1.3e+02 Score=35.53 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002997 546 DQAELKALRHEKQEVEQCQ 564 (859)
Q Consensus 546 e~~eLk~LR~ekeelq~lk 564 (859)
...+++.||.+..-++++.
T Consensus 149 ~~~Ev~~LRreLavLRQl~ 167 (424)
T PF03915_consen 149 DLKEVQSLRRELAVLRQLY 167 (424)
T ss_dssp -------------------
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456677777766666653
No 431
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=80.08 E-value=77 Score=32.67 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 632 EREQKALKNAQSLEAQRVLLREELATEKQKV 662 (859)
Q Consensus 632 ekErk~lerLka~EkQ~a~LQeEL~~EK~kL 662 (859)
++...+...+...++.....++.+...+.++
T Consensus 55 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L 85 (184)
T CHL00019 55 NRKQTILNTIRNSEERREEAIEKLEKARARL 85 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444444444444333
No 432
>PRK11519 tyrosine kinase; Provisional
Probab=79.95 E-value=60 Score=40.56 Aligned_cols=27 Identities=4% Similarity=0.214 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002997 579 SEMEFALTNATAQVERSSSTVHTLEME 605 (859)
Q Consensus 579 semE~aL~ka~~Qlera~a~vr~LE~E 605 (859)
.=++++|..+..+++.++..+..+..+
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555433
No 433
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=79.92 E-value=0.56 Score=53.33 Aligned_cols=55 Identities=27% Similarity=0.614 Sum_probs=0.0
Q ss_pred Ccccccccccc-------------------CcCcEEeCCCchhhhHHhHHHHhhcC---------CCCCCCccccccC--
Q 002997 801 RERECVVCLAE-------------------EKSVVFLPCAHQVLCQKCNELHEKQG---------MNDCPSCRSPIQQ-- 850 (859)
Q Consensus 801 ~~~~C~ICle~-------------------~~~~VllpCgH~vfC~~Ci~~~~~~~---------~~~CP~CR~~i~~-- 850 (859)
..+.|++|+.. +-..+|.||||. |.+=.-.+|.+- ...||.|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv--~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~ 404 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHV--CSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQ 404 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccc--cchhhhhhhhcCCCCCCcccccccCCcccCcccCCC
Confidence 37899999963 233568899998 555444455321 1469999999875
Q ss_pred -ceEEEec
Q 002997 851 -RIQVRFA 857 (859)
Q Consensus 851 -~i~i~~~ 857 (859)
.++++|-
T Consensus 405 g~vrLiFQ 412 (416)
T PF04710_consen 405 GYVRLIFQ 412 (416)
T ss_dssp --------
T ss_pred CceEEEEe
Confidence 4676663
No 434
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=79.71 E-value=60 Score=31.27 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAE 673 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK 673 (859)
+..+..-+..+...|...+..+..++.+++.++
T Consensus 63 l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r 95 (141)
T TIGR02473 63 LSNYQRFIRQLDQRIQQQQQELALLQQEVEAKR 95 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 435
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.49 E-value=1.7e+02 Score=36.73 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=5.6
Q ss_pred HHHHHHHhHHHHH
Q 002997 94 LGELLSSGLNTLF 106 (859)
Q Consensus 94 L~~~Ll~~i~~~y 106 (859)
|+.-+-.....+|
T Consensus 131 Le~k~~~~~~~iy 143 (762)
T PLN03229 131 LESKYQQALKDLY 143 (762)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 436
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=79.37 E-value=76 Score=35.73 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=15.4
Q ss_pred ccccccccccCcCcEEeC----CCchhhhHHhHH
Q 002997 802 ERECVVCLAEEKSVVFLP----CAHQVLCQKCNE 831 (859)
Q Consensus 802 ~~~C~ICle~~~~~Vllp----CgH~vfC~~Ci~ 831 (859)
...|.+-.....+..++. -|.--+|..-+.
T Consensus 325 gK~C~l~ikL~pdGtl~~~~~~~Gd~~lCqAals 358 (387)
T COG3064 325 GKTCRLRIKLAPDGTLLDIKPEGGDPALCQAALS 358 (387)
T ss_pred CceeEEEEEEcCCcceeeccccCCChHHHHHHHH
Confidence 346776666554444432 233336666654
No 437
>PHA03096 p28-like protein; Provisional
Probab=79.21 E-value=1.2 Score=49.11 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=29.7
Q ss_pred cccccccccC--------cCcEEeCCCchhhhHHhHHHHhhcCC--CCCCCccc
Q 002997 803 RECVVCLAEE--------KSVVFLPCAHQVLCQKCNELHEKQGM--NDCPSCRS 846 (859)
Q Consensus 803 ~~C~ICle~~--------~~~VllpCgH~vfC~~Ci~~~~~~~~--~~CP~CR~ 846 (859)
..|.||++.. ...++-.|-|. ||..|+..|...+. ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence 6799999862 23456689999 99999998765332 33544443
No 438
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=79.09 E-value=69 Score=35.41 Aligned_cols=32 Identities=9% Similarity=0.346 Sum_probs=19.1
Q ss_pred CchHHHHHhhcccHHHHH-HHHhHhHHHHHHHHHH
Q 002997 505 NGKDELILKLVPWVPELQ-NELNSWTEWANQKVMQ 538 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~-~~~~e~~~wa~~k~~q 538 (859)
+-....+.....-|.+|+ .+++. +|=++++-.
T Consensus 145 ~LS~~dl~e~~~~l~DLesa~vkV--~WLR~~L~E 177 (269)
T PF05278_consen 145 ELSESDLKEMIATLKDLESAKVKV--DWLRSKLEE 177 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHcCcch--HHHHHHHHH
Confidence 444555666666667776 45555 777665544
No 439
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.90 E-value=1e+02 Score=33.30 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
.+.+.++.+.+.+.=++.-++..-.++.++-.+++++|+
T Consensus 66 ~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEv 104 (246)
T KOG4657|consen 66 DLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEV 104 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444
No 440
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=78.89 E-value=88 Score=33.06 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 632 EREQKALKNAQSLEAQRVLLREELATEKQKV 662 (859)
Q Consensus 632 ekErk~lerLka~EkQ~a~LQeEL~~EK~kL 662 (859)
+++..+...+...++.....++.++..++++
T Consensus 79 ~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L 109 (205)
T PRK06231 79 KRKELIEAEINQANELKQQAQQLLENAKQRH 109 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444444444443
No 441
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.87 E-value=62 Score=30.89 Aligned_cols=41 Identities=27% Similarity=0.295 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 636 KALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 636 k~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
.+..+...-.+.......+|......+..++.+.......+
T Consensus 64 rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 64 RAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433333
No 442
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=78.77 E-value=57 Score=37.39 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002997 580 EMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLR 619 (859)
Q Consensus 580 emE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~ 619 (859)
..+.++++++..|..+...++.++.++...++.++.++..
T Consensus 88 ~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~ 127 (352)
T COG1566 88 DYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQ 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777777777777766654
No 443
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=78.52 E-value=54 Score=29.99 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEI 669 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqEL 669 (859)
+..+..-+..+...|...+..+..++.++
T Consensus 47 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 75 (123)
T PF02050_consen 47 LRNYQRYISALEQAIQQQQQELERLEQEV 75 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333333
No 444
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=78.38 E-value=68 Score=31.42 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 648 RVLLREELATEKQKVAVLQQEISK 671 (859)
Q Consensus 648 ~a~LQeEL~~EK~kL~~lqqELEe 671 (859)
+..+...+......+..+++++++
T Consensus 103 ~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 103 KEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 445
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=78.31 E-value=66 Score=35.64 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 647 QRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREER 687 (859)
Q Consensus 647 Q~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeek 687 (859)
.+..|+..|.+-..+|.....|+++++.++..+++-|-+++
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEE 109 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555544
No 446
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.82 E-value=1.2e+02 Score=33.60 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 629 EAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRN 702 (859)
Q Consensus 629 eI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekk 702 (859)
++..-|+-+...++....++..++..+......-..+...++..+.+++..++|++..+...++-+.+-+....
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEE 232 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 33344555555555555555555555555555555555555555555555555555556666666555553333
No 447
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.79 E-value=28 Score=31.50 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQ 696 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaq 696 (859)
+++.+-..|..||-+|+.+|.+-..+.++.+.++..-..++..-++.++....|+..
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 466667778888888888888887777777776666555555544444444444433
No 448
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.67 E-value=0.88 Score=49.59 Aligned_cols=29 Identities=24% Similarity=0.736 Sum_probs=15.1
Q ss_pred cccccccccCcCcEEeCC----CchhhhHHhHHH
Q 002997 803 RECVVCLAEEKSVVFLPC----AHQVLCQKCNEL 832 (859)
Q Consensus 803 ~~C~ICle~~~~~VllpC----gH~vfC~~Ci~~ 832 (859)
+.|.+|.++.-|.-|+.| .|. ||+.|...
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSRe 301 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRE 301 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccc-eecccCHH
Confidence 445555555555555555 344 55555443
No 449
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=77.59 E-value=1.3e+02 Score=35.12 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 002997 590 AQVERSSSTVHTLE 603 (859)
Q Consensus 590 ~Qlera~a~vr~LE 603 (859)
+.+..++..+...+
T Consensus 13 qr~~~~~~~laq~~ 26 (459)
T KOG0288|consen 13 QRLIDLNTELAQCE 26 (459)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333333333333
No 450
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.37 E-value=37 Score=30.07 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMA 689 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~ 689 (859)
+++..-.-+..||-+|++.|.+-..+.++...++...+.++.+-++.++.
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777888888888888777777766666555554443333333
No 451
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=77.37 E-value=1.3 Score=56.68 Aligned_cols=51 Identities=22% Similarity=0.615 Sum_probs=39.1
Q ss_pred CCcccccccccc---CcCcEEeCCCchhhhHHhHHHHhhcC---------CCCCCCccccccCc
Q 002997 800 KRERECVVCLAE---EKSVVFLPCAHQVLCQKCNELHEKQG---------MNDCPSCRSPIQQR 851 (859)
Q Consensus 800 ~~~~~C~ICle~---~~~~VllpCgH~vfC~~Ci~~~~~~~---------~~~CP~CR~~i~~~ 851 (859)
..+..|.||+.. ...++.+.|+|. |=..|.......+ ...||+|..+|...
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 455689999986 456778999999 9999988655422 23699999998764
No 452
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=77.10 E-value=1.6e+02 Score=34.74 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhHHHHHH
Q 002997 717 MIKLEAEKEMSKLTEDI 733 (859)
Q Consensus 717 ~~r~eaE~elqrlkdeI 733 (859)
++++++..+.+..-+.|
T Consensus 244 ~l~~~~n~eRekwl~aI 260 (630)
T KOG0742|consen 244 QLRLKANEEREKWLEAI 260 (630)
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 34444444444443333
No 453
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=77.04 E-value=1.2e+02 Score=35.57 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 606 HSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEI 669 (859)
Q Consensus 606 ~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqEL 669 (859)
...+..+++..+....+...++.++.+++.++-..++..+.....+.++....-++-...+.++
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~ 241 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQL 241 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444445555555555555555555555555555554444444433333333333333
No 454
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=76.83 E-value=60 Score=29.66 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVAVLQQEISKAEN 674 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~~lqqELEeaK~ 674 (859)
..+...+.++...+.++...+..+.++..
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~r~~l~~a~~ 87 (123)
T PF02050_consen 59 QAIQQQQQELERLEQEVEQAREELQEARR 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 455
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=76.60 E-value=2e+02 Score=36.81 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 554 RHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFER 633 (859)
Q Consensus 554 R~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ek 633 (859)
|++.+.++-......+..+.-..-+.+.=..|.++ -.+........|....+....||.. ..
T Consensus 1037 rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl--~~eaq~~Q~k~LK~~~e~e~kElk~----------------~l 1098 (1189)
T KOG1265|consen 1037 RQTQELLEMRREQYEEEFELKEEHLKEQISLLRKL--LSEAQTNQTKALKESLEKETKELKK----------------KL 1098 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----------------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 634 EQKALKNAQSLEAQRVLLREELATEKQKV--AVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAA 711 (859)
Q Consensus 634 Erk~lerLka~EkQ~a~LQeEL~~EK~kL--~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~ 711 (859)
+++-+++++. .....-+.+.+.+++++ ..+++-+++.++-.+....+..+..+.-.+.+.|+.++ .....++...
T Consensus 1099 ~kkr~e~ik~--~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~-~kal~~e~~~ 1175 (1189)
T KOG1265|consen 1099 DKKRMEDIKV--DKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEE-EKALDAEAEQ 1175 (1189)
T ss_pred HHHHHHhhhh--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 002997 712 KAEEEMIKLEAE 723 (859)
Q Consensus 712 k~e~e~~r~eaE 723 (859)
.-++++.++-++
T Consensus 1176 ~~e~~~~~~p~~ 1187 (1189)
T KOG1265|consen 1176 EYEEQMARLPAE 1187 (1189)
T ss_pred HHHHHHhcCCcc
No 456
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.59 E-value=26 Score=41.95 Aligned_cols=9 Identities=0% Similarity=-0.064 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002997 591 QVERSSSTV 599 (859)
Q Consensus 591 Qlera~a~v 599 (859)
+++.+++.+
T Consensus 93 ~~~~~~~~~ 101 (525)
T TIGR02231 93 RGDALKALA 101 (525)
T ss_pred HHHHHHHHH
Confidence 333333333
No 457
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=76.44 E-value=90 Score=37.65 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=12.4
Q ss_pred cccccCCCCCchHHHHHhhc
Q 002997 496 ETLGRYIPQNGKDELILKLV 515 (859)
Q Consensus 496 e~l~~~v~~D~k~e~i~~l~ 515 (859)
+++ ||.+|=+.|.+.-+.
T Consensus 235 eHc--yis~DY~eei~~~l~ 252 (645)
T KOG0681|consen 235 EHC--YISPDYREEIIKILE 252 (645)
T ss_pred hhc--eeCcchHHHHHHHhh
Confidence 666 677777777766655
No 458
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=76.37 E-value=1e+02 Score=33.63 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 648 RVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAA-IRNQREQLEAAAKAEEEMIKLEAEKEM 726 (859)
Q Consensus 648 ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~-ekkE~e~~ee~~k~e~e~~r~eaE~el 726 (859)
...+++--......+....+..++++...++.+.++.+.++...+++.++.. ..++++++.+.++.+.+.++.++..++
T Consensus 31 ~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~i 110 (250)
T PRK14474 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQL 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -hHHHHHHHHHHHHHHHH
Q 002997 727 -SKLTEDIGKLESQLSLL 743 (859)
Q Consensus 727 -qrlkdeIkrLEeELeqL 743 (859)
...+.-+..++.++..+
T Consensus 111 e~Ek~~a~~~L~~~v~~l 128 (250)
T PRK14474 111 EREKQEFFKALQQQTGQQ 128 (250)
T ss_pred HHHHHHHHHHHHHHHHHH
No 459
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.27 E-value=98 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002997 651 LREELATEKQKVAVLQQE 668 (859)
Q Consensus 651 LQeEL~~EK~kL~~lqqE 668 (859)
.|.||...|++|+-+...
T Consensus 274 Hq~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 274 HQNEIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 355555555555444433
No 460
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=76.18 E-value=1.3e+02 Score=33.31 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=19.1
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEWANQKVMQ 538 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~q 538 (859)
|....-...|...+..-...+....+++..+--+
T Consensus 92 d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~ 125 (297)
T PF02841_consen 92 DEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQ 125 (297)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455566666666666666666666554433
No 461
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.74 E-value=82 Score=39.84 Aligned_cols=6 Identities=17% Similarity=-0.225 Sum_probs=2.7
Q ss_pred cccCCC
Q 002997 428 ASTRTP 433 (859)
Q Consensus 428 ~~stk~ 433 (859)
+++|+-
T Consensus 439 iitTH~ 444 (771)
T TIGR01069 439 LITTHY 444 (771)
T ss_pred EEECCh
Confidence 444444
No 462
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=75.73 E-value=1.3 Score=54.78 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=36.1
Q ss_pred CCccccccccccCc--C-----cEEeCCCchhhhHHhHHHHhhcC-CCCCCCccccccC
Q 002997 800 KRERECVVCLAEEK--S-----VVFLPCAHQVLCQKCNELHEKQG-MNDCPSCRSPIQQ 850 (859)
Q Consensus 800 ~~~~~C~ICle~~~--~-----~VllpCgH~vfC~~Ci~~~~~~~-~~~CP~CR~~i~~ 850 (859)
..-.+|.||+.... + -.--.|.|. |=..|+-.|..+. ...||.||..|..
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 55668999997422 1 111259999 9999999988754 4689999988753
No 463
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.35 E-value=19 Score=39.31 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKE 612 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraE 612 (859)
|++++.++..+..+++.....+.+||..+..+...
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566777777777777888888888777777755
No 464
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.27 E-value=1.4 Score=39.37 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=35.3
Q ss_pred cCCCccccccccccCcCcEEe--CCCchhhhHHhHHHHhh--cCCCCCCCcccccc
Q 002997 798 GLKRERECVVCLAEEKSVVFL--PCAHQVLCQKCNELHEK--QGMNDCPSCRSPIQ 849 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~Vll--pCgH~vfC~~Ci~~~~~--~~~~~CP~CR~~i~ 849 (859)
++.-+-.|+-|.-..-+.-++ -|.|. |=..||..+.. +.+..||+||+.+.
T Consensus 27 Rm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 27 RMPFDGCCPDCKLPGDDCPLVWGYCLHA-FHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ecccCCcCCCCcCCCCCCccHHHHHHHH-HHHHHHHHHhcCccccccCCcchheeE
Confidence 334455666666554443332 69999 99999998875 34567999999764
No 465
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.94 E-value=1.4e+02 Score=35.69 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=27.1
Q ss_pred cccccCCCCCchHHHHHhhcccHHHHHHHHhH------hHHHHHHH
Q 002997 496 ETLGRYIPQNGKDELILKLVPWVPELQNELNS------WTEWANQK 535 (859)
Q Consensus 496 e~l~~~v~~D~k~e~i~~l~~~v~~L~~~~~e------~~~wa~~k 535 (859)
..+..|.+.+.+-..+.--.-.+...+..|+. =..|++..
T Consensus 274 ~~~~~~~~n~~~t~~~afv~~~~~q~e~~L~~kP~gVd~~~W~QA~ 319 (508)
T KOG3091|consen 274 KTLKEWLLNTPKTRVLAFVYLSVAQTEAYLETKPAGVDQRIWRQAM 319 (508)
T ss_pred HHHHHHhhcCCcchhhhhhccCHHHHHHHhcCCCCCcCHHHHHHHh
Confidence 55677888888888777777777777766642 13566655
No 466
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.66 E-value=2e+02 Score=34.53 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCcch
Q 002997 712 KAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYKSDSS 750 (859)
Q Consensus 712 k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k~~s~ 750 (859)
..+.+.++-.......++-.-|+.|+.+++..++..+..
T Consensus 384 eqkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~ 422 (613)
T KOG0992|consen 384 EQKLEELKVQFTAKQEKHAETIKELEIELEEYRRAILRN 422 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334555666666666777788999999999998886543
No 467
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.55 E-value=1.1e+02 Score=31.49 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 660 QKVAVLQQEISKAENRHNQLETRWREE 686 (859)
Q Consensus 660 ~kL~~lqqELEeaK~~veqlE~r~qee 686 (859)
.....++.+.+..+.+++.++.+++++
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~e 99 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554443
No 468
>PRK12705 hypothetical protein; Provisional
Probab=74.54 E-value=2e+02 Score=34.67 Aligned_cols=11 Identities=36% Similarity=0.268 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 002997 688 MARENLLAQAA 698 (859)
Q Consensus 688 k~kEeLlaqaE 698 (859)
++++.++.+++
T Consensus 142 eak~~l~~~~~ 152 (508)
T PRK12705 142 QARKLLLKLLD 152 (508)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 469
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=74.37 E-value=2.1e+02 Score=34.70 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=6.5
Q ss_pred HHHHhhhcccccCC
Q 002997 123 ATKNIARHSIYCGG 136 (859)
Q Consensus 123 ~~~all~ag~cyG~ 136 (859)
+...++-.|.=||+
T Consensus 8 l~~~~l~~~~~ygG 21 (582)
T PF09731_consen 8 LLYTTLLGGVGYGG 21 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444455555
No 470
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.31 E-value=84 Score=37.12 Aligned_cols=19 Identities=21% Similarity=0.206 Sum_probs=13.6
Q ss_pred HHhHhHHHHHHHHHHHHHH
Q 002997 524 ELNSWTEWANQKVMQAARR 542 (859)
Q Consensus 524 ~~~e~~~wa~~k~~qaA~r 542 (859)
.++.-.-||.+||+|....
T Consensus 5 ~~kKa~sRa~ekvlqk~g~ 23 (460)
T KOG3771|consen 5 GVQKALNRAPEKVLQKLGK 23 (460)
T ss_pred hhHHHhccccHHHHhhcCC
Confidence 4555567899999887653
No 471
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=73.81 E-value=35 Score=40.83 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEH 606 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~ 606 (859)
++.+++++|..+..+++++++.+..++.++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444433
No 472
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=73.66 E-value=1.6e+02 Score=34.78 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 643 SLEAQRVLLREELATEKQKVAVLQQ 667 (859)
Q Consensus 643 a~EkQ~a~LQeEL~~EK~kL~~lqq 667 (859)
..-..+..|+.+|...+.++..++.
T Consensus 283 ~~~~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 283 AIYQLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555554443
No 473
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=73.65 E-value=1.1e+02 Score=36.25 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 592 VERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKV 662 (859)
Q Consensus 592 lera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL 662 (859)
.+..-..|..|+.++..+++++........... =++..++.+++.|+++|..++.++
T Consensus 281 a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~s--------------PqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 281 ITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQN--------------PLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------------CchhHHHHHHHHHHHHHHHHHHHh
Confidence 334444566666666666666654322111111 124455556666666666666665
No 474
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.60 E-value=39 Score=30.05 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 630 AFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENR 675 (859)
Q Consensus 630 I~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~ 675 (859)
+..++-+....++.+..++..++..+...+.++.....+++.++..
T Consensus 24 LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 24 LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555444443
No 475
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=73.46 E-value=95 Score=30.39 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 002997 648 RVLLREELATEKQKV 662 (859)
Q Consensus 648 ~a~LQeEL~~EK~kL 662 (859)
+..+++.|...+.++
T Consensus 110 ~~~l~~~l~~~~~~~ 124 (140)
T PRK03947 110 LEKLEEALQKLASRI 124 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.33 E-value=2.2e+02 Score=34.50 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 634 EQKALKNAQSLEAQRVLLREELATEKQKVA 663 (859)
Q Consensus 634 Erk~lerLka~EkQ~a~LQeEL~~EK~kL~ 663 (859)
|++-.++++-+.++...|+..|++.+.+..
T Consensus 657 ErdFk~Elq~~~~~~~~L~~~iET~~~~~~ 686 (741)
T KOG4460|consen 657 ERDFKKELQLIPDQLRHLGNAIETVTMKKD 686 (741)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555554443
No 477
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.27 E-value=60 Score=34.79 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002997 690 RENLLAQAAAIRNQREQLEA 709 (859)
Q Consensus 690 kEeLlaqaE~ekkE~e~~ee 709 (859)
..++..|.+....++.+..+
T Consensus 181 ~~al~Kq~e~~~~EydrLle 200 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLE 200 (216)
T ss_pred HHHHHHHHHHcccHHHHHHH
Confidence 33444444444555554444
No 478
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=73.25 E-value=1.3e+02 Score=32.38 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 632 EREQKALKNAQSLEAQRVLLREELATEKQKV 662 (859)
Q Consensus 632 ekErk~lerLka~EkQ~a~LQeEL~~EK~kL 662 (859)
+++..+...+...++.....+..+...+.++
T Consensus 36 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l 66 (246)
T TIGR03321 36 AREKKIAGELADADTKKREAEQERREYEEKN 66 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444444443
No 479
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.02 E-value=79 Score=29.60 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 536 VMQAARRLSKDQAELKALRHEKQEV 560 (859)
Q Consensus 536 ~~qaA~rL~ke~~eLk~LR~ekeel 560 (859)
+++....+..++.|++....+...+
T Consensus 18 l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 18 YIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444444555555555554444444
No 480
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.94 E-value=1.6e+02 Score=32.68 Aligned_cols=18 Identities=33% Similarity=0.178 Sum_probs=8.3
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEAA 616 (859)
Q Consensus 599 vr~LE~E~a~lraEmEaA 616 (859)
.++||.+.++.+...+.|
T Consensus 333 kqeleqmaeeekkr~eea 350 (445)
T KOG2891|consen 333 KQELEQMAEEEKKREEEA 350 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555444444444443
No 481
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=72.60 E-value=1.9e+02 Score=33.47 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 565 KDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 565 kekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
...........+++.++..+..+++.|+......+..++..+..++.-+..
T Consensus 240 ~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~ 290 (384)
T PF03148_consen 240 AQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRD 290 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667888888888888888877777777777766666555543
No 482
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=72.35 E-value=1.4e+02 Score=32.51 Aligned_cols=95 Identities=18% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 630 AFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEA 709 (859)
Q Consensus 630 I~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee 709 (859)
+.+++..+...+...++.....++.+...++++...+++..+..... ..++.......+++.+.+.++..+
T Consensus 34 l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A---------~~eA~~~~~~il~~A~~ea~~~~~ 104 (250)
T PRK14474 34 MKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQA---------QEAADEQRQHLLNEAREDVATARD 104 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 002997 710 AAKAEEEMIKLEAEKEMSKLTEDI 733 (859)
Q Consensus 710 ~~k~e~e~~r~eaE~elqrlkdeI 733 (859)
..+...+..+.++..+++..-.++
T Consensus 105 ~a~~~ie~Ek~~a~~~L~~~v~~l 128 (250)
T PRK14474 105 EWLEQLEREKQEFFKALQQQTGQQ 128 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 483
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=72.25 E-value=32 Score=41.21 Aligned_cols=74 Identities=12% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 616 ANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMA 689 (859)
Q Consensus 616 AKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~ 689 (859)
+-....+..+.+..+..+-+++..+.+.+..+++++...|++.|+.+.+.+.+|.+++..+++.+.++++..+.
T Consensus 77 ~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 77 IGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 484
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=72.08 E-value=2e+02 Score=33.40 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 002997 586 TNATAQVERSSSTVHTLEMEHSVLKKEME-AANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATE---KQK 661 (859)
Q Consensus 586 ~ka~~Qlera~a~vr~LE~E~a~lraEmE-aAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~E---K~k 661 (859)
.....++..+.+.+..++.+++.+++... ....+..........+..+-..+..++....+++...+..+... -.+
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 171 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKR 171 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 662 VAVLQQEISKAE---NRHNQLETRW-REERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLE 737 (859)
Q Consensus 662 L~~lqqELEeaK---~~veqlE~r~-qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLE 737 (859)
...+.++.+..+ ......+..+ .+.+...+.+............+... ..+.++...+.++..++
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~-----------~~~~~~~~~~~~l~~~~ 240 (421)
T TIGR03794 172 DRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAG-----------VAEKELETVEARIKEAR 240 (421)
T ss_pred HHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh
Q 002997 738 SQLSLLKY 745 (859)
Q Consensus 738 eELeqLr~ 745 (859)
.++..++.
T Consensus 241 ~~l~~~~~ 248 (421)
T TIGR03794 241 YEIEELEN 248 (421)
T ss_pred HHHHHHHH
No 485
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=72.00 E-value=2e+02 Score=33.56 Aligned_cols=198 Identities=13% Similarity=-0.010 Sum_probs=0.0
Q ss_pred CCcccCCccccccccCCCCCccccccCCCCCccccccccccccCCCCcccccCCCCCCCCCCCCCCCCCCCCcCCCCCCc
Q 002997 379 GKLASMGGFVLEKRVRPASDLSAVHPKSGPSKISADTGAAAASRDRGHCASTRTPLAHPVSDSPSSLPTKGTTLALPVPN 458 (859)
Q Consensus 379 nr~~sl~s~v~~K~g~~~s~~~~v~ikn~~~~a~s~~~vk~~~~~~~~~~~stk~~~~~~i~~~~~lq~~np~~~Lsqd~ 458 (859)
+.+.+|+.+- .+||.+.+.... .|-++..+ -.+.+.+|..+-|.|.. ..+++.....+.
T Consensus 97 ~~~~~l~~v~-------------~~ik~g~sg~s~--~v~skPrE-fA~likNkFGSADNI~s-----l~~~~~~~~~~~ 155 (395)
T PF10267_consen 97 DMGQGLKDVG-------------GNIKGGLSGLSG--AVVSKPRE-FAHLIKNKFGSADNISS-----LKDSLDEPNPDS 155 (395)
T ss_pred cccccccccc-------------ccccCCCcchhH--HHHhCcHH-HHhcccCCCCCCCcccc-----ccccccccCCCC
Q ss_pred hhhhcccCCCCCCccccccCC---CCCCCCcc----------------cccccccccccccCCCCCchHHHHHhhcccHH
Q 002997 459 TELVASSSSKKNPDIKAVATT---SPSPKLPE----------------YYAGIPFDETLGRYIPQNGKDELILKLVPWVP 519 (859)
Q Consensus 459 ar~fLss~~~~~~~~~~~~~~---~~stp~~k----------------y~~~i~yde~l~~~v~~D~k~e~i~~l~~~v~ 519 (859)
+--.++.+.-..+.++.-.-+ |.|.++.+ -..+-.+...+ +...+.+.++.....
T Consensus 156 ~~~~l~~s~~~~~~~ky~S~d~SecSS~tS~S~~~~s~~~~~~~~~~~~~~~~~~~~~l------~~~~~el~eik~~~~ 229 (395)
T PF10267_consen 156 GPRSLSGSSTLTASPKYGSEDSSECSSVTSGSIDANSNSSNSGGSSQGSSVSSQQNLGL------QKILEELREIKESQS 229 (395)
T ss_pred CCcCCCCCcccccccccCcccccccccCCCCCCCCCCCCCCCCcccccccccccccchH------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 520 ELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQ-----CQKDKQILEENTVKRLSEMEFALTNATAQVER 594 (859)
Q Consensus 520 ~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~-----lkkekq~lee~t~KrLsemE~aL~ka~~Qler 594 (859)
.|+..++.+++=-+.-+--....|.++.-..+.|.+...++-. ....+++|..-..|---...+..+.+.+-+|.
T Consensus 230 ~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es 309 (395)
T PF10267_consen 230 RLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMES 309 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHH
Q 002997 595 SSSTVHTLE 603 (859)
Q Consensus 595 a~a~vr~LE 603 (859)
.+..|.++|
T Consensus 310 ~qtRisklE 318 (395)
T PF10267_consen 310 CQTRISKLE 318 (395)
T ss_pred HHHHHHHHH
No 486
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=71.91 E-value=1.2e+02 Score=30.78 Aligned_cols=132 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 002997 603 EMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELAT----EKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 603 E~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~----EK~kL~~lqqELEeaK~~veq 678 (859)
.....--+.-+-.-+.+..++.+.-.++.++-...+-++....++++.++++|+. .++++..++..++.+++++.-
T Consensus 23 ~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkp 102 (159)
T PF04949_consen 23 DEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKP 102 (159)
T ss_pred hhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHhhcCcc
Q 002997 679 LETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLE-SQLSLLKYKSDS 749 (859)
Q Consensus 679 lE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLE-eELeqLr~k~~s 749 (859)
+....+..++...+++....+..+++..... .+-.+-.+-.++. +.|++|....++
T Consensus 103 l~~~cqKKEkEykealea~nEknkeK~~Lv~---------------~L~eLv~eSE~~rmKKLEELsk~ies 159 (159)
T PF04949_consen 103 LGQSCQKKEKEYKEALEAFNEKNKEKAQLVT---------------RLMELVSESERLRMKKLEELSKEIES 159 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhhccC
No 487
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.77 E-value=1e+02 Score=33.26 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred cHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 517 WVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSS 596 (859)
Q Consensus 517 ~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~ 596 (859)
.+.-..++++. .+..|--+-..-+.++-.|+...++++....+.++-.+...+++.+++..+...+..+.+..
T Consensus 104 D~elvrkEl~n-------AlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 104 DVELVRKELKN-------ALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred CHHHHHHHHHH-------HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002997 597 STVHTLEMEHSVLKKEMEAANLRAAK 622 (859)
Q Consensus 597 a~vr~LE~E~a~lraEmEaAKl~~~e 622 (859)
-....|+.+...+--+....+.++++
T Consensus 177 ~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 177 VENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHH
No 488
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=71.68 E-value=47 Score=31.44 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Q 002997 511 ILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQ------------CQKDKQILEENTVKRL 578 (859)
Q Consensus 511 i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~------------lkkekq~lee~t~KrL 578 (859)
+-.++.+.+.++.+++. +.+....|..++.+++....+...+.. ....+.++.....+++
T Consensus 5 ~q~~~~~~q~~q~~~~~--------l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~ 76 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQA--------VATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKK 76 (110)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002997 579 SEMEFALTNATAQVERSSSTVHTLEMEHSVL 609 (859)
Q Consensus 579 semE~aL~ka~~Qlera~a~vr~LE~E~a~l 609 (859)
..++..+..++.+++.....+..++..+.++
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=71.60 E-value=1.5e+02 Score=33.07 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSS-----STVHTLEMEHSVLKKEMEAANLRAAKSAVSC----------QEAFEREQKALKNA 641 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~-----a~vr~LE~E~a~lraEmEaAKl~~~es~k~l----------qeI~ekErk~lerL 641 (859)
.+...+..+..+..++.++. ..+..++..+...+++++.++..+.....-+ .+....-..+..++
T Consensus 82 ~l~~~~a~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~ 161 (331)
T PRK03598 82 ALMQAKANVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATL 161 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 642 QSLEAQRVLLR-----EELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 642 ka~EkQ~a~LQ-----eEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
+.++.++..++ .++...+.++...+..++.++..+..
T Consensus 162 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l~~ 203 (331)
T PRK03598 162 KSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQD 203 (331)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 490
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=71.47 E-value=1.4e+02 Score=31.54 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 630 AFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEA 709 (859)
Q Consensus 630 I~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee 709 (859)
+.+++..+...+...++.....++.+...+++|...+.+..+..... ..+........+...+.+.++..+
T Consensus 82 Le~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~A---------r~ea~~~~e~~~~~a~~ea~~~l~ 152 (204)
T PRK09174 82 IETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAA---------REAAKAKAEAERAAIEASLEKKLK 152 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 002997 710 AAKAEEEMIKLEAEKEMSKLTEDI 733 (859)
Q Consensus 710 ~~k~e~e~~r~eaE~elqrlkdeI 733 (859)
.++.+++..+.++..+++..-.++
T Consensus 153 ~Ae~~I~~ek~~A~~el~~~a~e~ 176 (204)
T PRK09174 153 EAEARIAAIKAKAMADVGSIAEET 176 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.43 E-value=72 Score=28.98 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 583 FALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLL 651 (859)
Q Consensus 583 ~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~L 651 (859)
+-|+++..+|..|-.+|.-|..|+++++.+-.............-..+..+-.++......|...+..|
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=71.39 E-value=1.3e+02 Score=36.34 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002997 541 RRLSKDQAELKA-LRHEKQEVEQ----------CQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVL 609 (859)
Q Consensus 541 ~rL~ke~~eLk~-LR~ekeelq~----------lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~l 609 (859)
+++.+++-||+. |+++..++.+ +...-..+...+.+.+..|-.+++.+ +..|......-
T Consensus 354 ~~fldeL~EL~aFL~qRl~El~~~~~~~l~~~~~~~ap~~lq~~t~~~i~~ml~~V~~i----------i~~Lt~~~~~~ 423 (507)
T PF05600_consen 354 NQFLDELLELEAFLKQRLYELSNEESSSLSFSQFQNAPSILQQQTAESIEEMLSAVEEI----------ISQLTNPRTQH 423 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHhhhccHHHHhcCHHHHHHHHHHHHHH----------HHHhcCHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 610 KKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 610 raEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
=-.+-....=.+.....+++......++......++.+...+++++....-+|..+.++--+++..++.
T Consensus 424 L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 424 LFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 493
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=71.26 E-value=22 Score=37.39 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 002997 571 EENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQ----EAFEREQKALKNAQSLEA 646 (859)
Q Consensus 571 ee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lq----eI~ekErk~lerLka~Ek 646 (859)
+....++|.+++..|.+++.+.+.. ...-....+.++.|+|..-.=-.+....+. ..-..-+.+.+.|..++.
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~ 174 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEE 174 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 647 QRVLLREELATEKQKVAVLQQ 667 (859)
Q Consensus 647 Q~a~LQeEL~~EK~kL~~lqq 667 (859)
|+..|+.-|..-+.+|..|+|
T Consensus 175 QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 175 QVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
No 494
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.21 E-value=65 Score=34.50 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 637 ALKNAQSLEAQRVLLRE------ELATEKQKVAV---LQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQL 707 (859)
Q Consensus 637 ~lerLka~EkQ~a~LQe------EL~~EK~kL~~---lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ 707 (859)
++.++..+-.++..++. +....+..+.. +..+.+..++....++.+++......+.++.+....++..+..
T Consensus 112 vI~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 112 VIRRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002997 708 EAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLS 741 (859)
Q Consensus 708 ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELe 741 (859)
.. +..++.++-.+|+++++
T Consensus 192 ~~---------------EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 192 QD---------------EYDRLLEEYSKLQEQIE 210 (216)
T ss_pred cc---------------HHHHHHHHHHHHHHHHh
No 495
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=71.11 E-value=1.3e+02 Score=31.09 Aligned_cols=139 Identities=15% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCCCchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 502 IPQNGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEM 581 (859)
Q Consensus 502 v~~D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsem 581 (859)
+| .....+...++...+..+.....|.|=.+-+++..+.....--......-...-++- ..+....+
T Consensus 42 i~-~~~~~l~~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~i------------d~~~~~~~ 108 (184)
T PF05791_consen 42 IP-SKLSDLQKDLVQHQKTAKEHAKEWLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAI------------DQKDKEDL 108 (184)
T ss_dssp ---TT-TTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHT-HHHH
T ss_pred Cc-ccchhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------CcccHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 582 EFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQK 661 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~k 661 (859)
...|..+..++..-...+..+-.++...+..|.. ...++......++.-|......
T Consensus 109 ~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~------------------------D~~~l~~~~~~l~~~l~~~~g~ 164 (184)
T PF05791_consen 109 KEIIEDLQDQIQKNQDKVQALINELNDFKDKLQK------------------------DSRNLKTDVDELQSILAGENGD 164 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHhHHHHHHHHhcccCC
Q ss_pred HHHHHHHHHHHHHHHH
Q 002997 662 VAVLQQEISKAENRHN 677 (859)
Q Consensus 662 L~~lqqELEeaK~~ve 677 (859)
+..++.+++..+..++
T Consensus 165 I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 165 IPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHH
No 496
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=70.97 E-value=2.2e+02 Score=33.61 Aligned_cols=324 Identities=13% Similarity=0.040 Sum_probs=0.0
Q ss_pred ccccCCCCCccccccccccccCCCCcccccCCCCC-------CCCCCCCCCCCCCCCcCCCCCCchh-hhcccCCCCCCc
Q 002997 401 AVHPKSGPSKISADTGAAAASRDRGHCASTRTPLA-------HPVSDSPSSLPTKGTTLALPVPNTE-LVASSSSKKNPD 472 (859)
Q Consensus 401 ~v~ikn~~~~a~s~~~vk~~~~~~~~~~~stk~~~-------~~~i~~~~~lq~~np~~~Lsqd~ar-~fLss~~~~~~~ 472 (859)
+|++-.+.+.....|=+...-|+-...++|-++++ .|.|..--..--.....|=.+-..+ -+++|....+..
T Consensus 40 tvkv~srtv~s~~~~V~~~d~~rp~~hfvsr~~s~D~~s~~w~ptir~e~GS~S~~~p~vt~~~~s~ensf~Seaa~n~~ 119 (554)
T KOG4677|consen 40 TVKVSSRTVNSLRDFVDDDDDDRPERHFVSRSGSPDVGSISWSPTIREEAGSNSGSTPEVTEQLKSRENSFSSEAAYNQL 119 (554)
T ss_pred chhhhcccccccccccccccCCCcchhhcccccCCCcCccccCCccccccCCccCcCCcchhhhhhhhhccccHhhhccC
Q ss_pred cccccCCCCCCCCcccccccc---------------------cccccccCCCCCchHHHHHhhcccHHHHHHHHhHhHHH
Q 002997 473 IKAVATTSPSPKLPEYYAGIP---------------------FDETLGRYIPQNGKDELILKLVPWVPELQNELNSWTEW 531 (859)
Q Consensus 473 ~~~~~~~~~stp~~ky~~~i~---------------------yde~l~~~v~~D~k~e~i~~l~~~v~~L~~~~~e~~~w 531 (859)
|...+...-+.+. ||.. |-..++.-+.. +++...-+-.+.=-.|+.+|++
T Consensus 120 Pd~t~t~~~s~ks----~~~~~~r~~se~~~~d~~~~~~~~~~a~d~~~s~~~-q~~d~~e~~~~kdSQlkvrlqe---- 190 (554)
T KOG4677|consen 120 PDPTSTYSLSSKS----FFRGRTRPGSEQSLSDALSDTPAKSYAPDLGRSKGE-QYRDYSEDWSPKDSQLKVRLQE---- 190 (554)
T ss_pred CCCCCCccccccc----hhhhhcccchhhhccccccccchhhcccccccchhh-hHhhHhhhcccchhhHHHHHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002997 532 ANQKVMQAARRLSKDQAELKA----LRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHS 607 (859)
Q Consensus 532 a~~k~~qaA~rL~ke~~eLk~----LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a 607 (859)
+++|.+-.-+... |+.-.+.|+-.....+.-.+.....+...-..+...+..+...-++++-.+--+.
T Consensus 191 --------~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~ 262 (554)
T KOG4677|consen 191 --------VRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLI 262 (554)
T ss_pred --------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 608 VLKKEMEAANLRAAK--SAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWRE 685 (859)
Q Consensus 608 ~lraEmEaAKl~~~e--s~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qe 685 (859)
..+.++...|...+- ....-+++...-+..+--++.=++ ...++.|+++.+-++.--..+++.++-++..++..+++
T Consensus 263 ~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~k-stas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d 341 (554)
T KOG4677|consen 263 HFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDK-STASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIID 341 (554)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCc-chhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 686 ERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 686 ekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
.++....+..+...+........+ -+.......+....+.+-+-.-.+++..+....
T Consensus 342 ~EAq~r~l~s~~~~q~~~~h~~ka----~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~ 398 (554)
T KOG4677|consen 342 IEAQDRHLESAGQTQIFRKHPRKA----SILNMPLVLTLFYECFYHETEAEGTFSSRVNLK 398 (554)
T ss_pred HHHHHHhHHHHhHHHHHHhhhHhh----hhhhchHHHHHHHHHHHHHHHHhhhhhhhccch
No 497
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=70.90 E-value=1.4e+02 Score=31.29 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 531 WANQKVMQAARRLSKDQAELKALRHE----------KQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVH 600 (859)
Q Consensus 531 wa~~k~~qaA~rL~ke~~eLk~LR~e----------keelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr 600 (859)
|-+.+-.+.|....+.+-+.-.-..+ ++++.+++.+.+.-.......+...+..|..-..+|++-...+.
T Consensus 23 ~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~ 102 (201)
T PF12072_consen 23 KINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLE 102 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 601 TLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSL---EAQRVLLREELATEKQKVAVLQQEISKAENRHN 677 (859)
Q Consensus 601 ~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~---EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~ve 677 (859)
+.+.++...+.++..-+....+....+..+.......++++..+ +.....+..--...+.....+-++.++--....
T Consensus 103 ~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk~~Ll~~le~e~~~e~a~~ir~~eeeak~~A 182 (201)
T PF12072_consen 103 KREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAEEAKEILLEKLEEEARREAAALIRRIEEEAKEEA 182 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 002997 678 QLETRW 683 (859)
Q Consensus 678 qlE~r~ 683 (859)
.-+++.
T Consensus 183 ~~~Ar~ 188 (201)
T PF12072_consen 183 DKKARR 188 (201)
T ss_pred HHHHHH
No 498
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=70.70 E-value=1.3e+02 Score=30.75 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 648 RVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAA-IRNQREQLEAAAKAEEEMIKLEAEKEM 726 (859)
Q Consensus 648 ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~-ekkE~e~~ee~~k~e~e~~r~eaE~el 726 (859)
...+.+--......+....+..+++.....+++.++.+.+....+...++.. ....++.+...++.+.+.+..+++.++
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I 123 (173)
T PRK13453 44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEI 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -hHHHHHHHHHHHHHHHH
Q 002997 727 -SKLTEDIGKLESQLSLL 743 (859)
Q Consensus 727 -qrlkdeIkrLEeELeqL 743 (859)
+..+.-+..++.++..+
T Consensus 124 ~~ek~~a~~~l~~ei~~l 141 (173)
T PRK13453 124 NSQKERAIADINNQVSEL 141 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
No 499
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.46 E-value=70 Score=27.69 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 650 LLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEA 709 (859)
Q Consensus 650 ~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee 709 (859)
.||..|..+-+.-..++.+|...+......+.++++......+|..+++..+.+.+....
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 500
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=70.31 E-value=47 Score=38.96 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 623 SAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKV----AVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 623 s~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL----~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
...-+..|+---+.++......|+|+..-+.||..+.-+. ..+.++|...++--..++.|++.+++.+..++.+++
T Consensus 501 ~eTll~niq~llkva~dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L~ 580 (641)
T KOG3915|consen 501 IETLLTNIQGLLKVAIDNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEALE 580 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHH
Q 002997 699 AIRNQREQLEA 709 (859)
Q Consensus 699 ~ekkE~e~~ee 709 (859)
.+-+.+++++.
T Consensus 581 ~~sk~reqaeq 591 (641)
T KOG3915|consen 581 FESKRREQAEQ 591 (641)
T ss_pred hccccchhhhh
Done!