Query 002997
Match_columns 859
No_of_seqs 304 out of 1526
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.1 1.6E-11 5.3E-16 104.8 3.4 55 800-859 13-67 (68)
2 2vje_B MDM4 protein; proto-onc 99.1 2.8E-11 9.6E-16 101.5 3.6 56 801-857 6-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.1 3.3E-11 1.1E-15 101.4 3.6 56 801-857 7-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.1 2E-11 7E-16 107.0 1.0 58 796-858 12-69 (79)
5 4ic3_A E3 ubiquitin-protein li 99.1 1.3E-11 4.4E-16 106.6 -0.5 56 796-856 18-73 (74)
6 2ecg_A Baculoviral IAP repeat- 99.0 1.7E-11 5.9E-16 105.9 -0.9 56 796-856 19-74 (75)
7 4ayc_A E3 ubiquitin-protein li 99.0 2.7E-10 9.3E-15 109.5 6.2 51 800-852 51-101 (138)
8 2djb_A Polycomb group ring fin 98.9 6.4E-10 2.2E-14 94.9 5.2 58 794-853 7-65 (72)
9 2ecy_A TNF receptor-associated 98.9 6.2E-10 2.1E-14 93.3 4.5 54 796-850 9-62 (66)
10 2ysl_A Tripartite motif-contai 98.9 1.3E-09 4.4E-14 92.7 5.7 54 796-850 14-69 (73)
11 2yur_A Retinoblastoma-binding 98.9 9.3E-10 3.2E-14 94.6 4.7 56 794-850 7-64 (74)
12 2csy_A Zinc finger protein 183 98.9 1.8E-09 6.2E-14 94.1 6.0 53 797-851 10-62 (81)
13 2ecn_A Ring finger protein 141 98.8 8.7E-10 3E-14 93.2 2.8 59 796-857 9-67 (70)
14 1t1h_A Gspef-atpub14, armadill 98.8 1.9E-09 6.3E-14 93.1 4.7 52 798-850 4-55 (78)
15 3ztg_A E3 ubiquitin-protein li 98.8 2.2E-09 7.7E-14 95.5 4.7 53 796-849 7-61 (92)
16 2d8t_A Dactylidin, ring finger 98.8 2.5E-09 8.4E-14 91.0 4.6 50 799-850 12-61 (71)
17 3fl2_A E3 ubiquitin-protein li 98.8 9.8E-10 3.3E-14 103.5 2.3 53 797-850 47-99 (124)
18 2ecw_A Tripartite motif-contai 98.8 3.4E-09 1.2E-13 92.1 5.5 54 796-850 13-71 (85)
19 2ct2_A Tripartite motif protei 98.8 3.5E-09 1.2E-13 93.0 5.4 54 796-850 9-68 (88)
20 2ea6_A Ring finger protein 4; 98.8 2.6E-09 8.9E-14 89.4 4.1 52 797-850 10-68 (69)
21 2egp_A Tripartite motif-contai 98.8 1.2E-09 4E-14 94.2 1.8 54 796-850 6-65 (79)
22 2ysj_A Tripartite motif-contai 98.8 6E-09 2.1E-13 86.3 5.3 48 796-844 14-63 (63)
23 3lrq_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 98.6 1.7 54 796-850 16-70 (100)
24 2ecj_A Tripartite motif-contai 98.8 5.9E-09 2E-13 84.5 4.8 49 795-844 8-58 (58)
25 2ecv_A Tripartite motif-contai 98.7 5.3E-09 1.8E-13 90.8 4.2 54 796-850 13-71 (85)
26 1e4u_A Transcriptional repress 98.7 4.4E-09 1.5E-13 92.1 3.4 57 797-854 6-66 (78)
27 2xeu_A Ring finger protein 4; 98.7 4.3E-09 1.5E-13 86.8 2.7 54 801-856 2-64 (64)
28 1g25_A CDK-activating kinase a 98.7 7E-09 2.4E-13 86.6 4.0 48 802-850 3-55 (65)
29 3ng2_A RNF4, snurf, ring finge 98.7 3.9E-09 1.3E-13 89.1 2.5 54 800-855 8-70 (71)
30 1z6u_A NP95-like ring finger p 98.7 3.5E-09 1.2E-13 103.6 2.3 54 797-851 73-126 (150)
31 2kiz_A E3 ubiquitin-protein li 98.7 1.3E-08 4.3E-13 85.8 5.1 54 797-852 9-65 (69)
32 3t6p_A Baculoviral IAP repeat- 98.7 1.7E-09 5.8E-14 119.2 -0.4 56 796-856 289-344 (345)
33 2kre_A Ubiquitin conjugation f 98.7 1.6E-08 5.5E-13 92.5 6.1 53 796-850 23-75 (100)
34 2ep4_A Ring finger protein 24; 98.7 1.1E-08 3.6E-13 87.5 4.1 57 796-854 9-68 (74)
35 2kr4_A Ubiquitin conjugation f 98.7 1.2E-08 4E-13 90.5 4.5 53 796-850 8-60 (85)
36 3l11_A E3 ubiquitin-protein li 98.7 3.6E-09 1.2E-13 98.2 1.0 52 798-850 11-62 (115)
37 1chc_A Equine herpes virus-1 r 98.7 8.9E-09 3.1E-13 86.4 3.1 53 801-855 4-57 (68)
38 2f42_A STIP1 homology and U-bo 98.7 4.6E-08 1.6E-12 98.5 8.7 53 798-851 102-154 (179)
39 1wgm_A Ubiquitin conjugation f 98.7 1.9E-08 6.4E-13 91.7 5.4 54 796-851 16-70 (98)
40 2y43_A E3 ubiquitin-protein li 98.6 7E-09 2.4E-13 93.7 2.5 53 796-850 16-69 (99)
41 2ckl_A Polycomb group ring fin 98.6 1.1E-08 3.7E-13 94.0 3.3 53 796-850 9-62 (108)
42 2ect_A Ring finger protein 126 98.6 1.8E-08 6.3E-13 86.8 4.5 53 797-851 10-65 (78)
43 2ckl_B Ubiquitin ligase protei 98.6 1.2E-08 4.1E-13 100.6 3.6 53 797-850 49-102 (165)
44 2ecm_A Ring finger and CHY zin 98.6 1.5E-08 5.2E-13 81.3 3.5 47 801-849 4-54 (55)
45 2l0b_A E3 ubiquitin-protein li 98.6 2E-08 6.9E-13 89.8 4.4 51 799-851 37-90 (91)
46 2y1n_A E3 ubiquitin-protein li 98.6 1.4E-08 4.7E-13 113.1 4.0 56 800-856 330-385 (389)
47 3hct_A TNF receptor-associated 98.6 1.7E-08 5.8E-13 94.3 4.0 54 796-850 12-65 (118)
48 1jm7_A BRCA1, breast cancer ty 98.6 9.2E-09 3.2E-13 94.4 1.2 53 797-850 16-70 (112)
49 1iym_A EL5; ring-H2 finger, ub 98.6 2.6E-08 8.9E-13 80.0 3.2 48 800-849 3-54 (55)
50 1rmd_A RAG1; V(D)J recombinati 98.6 1.7E-08 5.8E-13 93.8 2.3 53 797-850 18-70 (116)
51 3knv_A TNF receptor-associated 98.5 1.8E-08 6.3E-13 97.5 1.9 51 797-848 26-76 (141)
52 2c2l_A CHIP, carboxy terminus 98.5 3.1E-08 1.1E-12 104.2 3.6 51 799-850 205-255 (281)
53 1x4j_A Ring finger protein 38; 98.5 4E-08 1.4E-12 84.2 3.1 49 800-850 21-72 (75)
54 1bor_A Transcription factor PM 98.5 1.6E-08 5.4E-13 82.5 0.4 46 800-850 4-49 (56)
55 1v87_A Deltex protein 2; ring- 98.5 6.6E-08 2.2E-12 89.3 3.6 49 802-851 25-95 (114)
56 1jm7_B BARD1, BRCA1-associated 98.4 1.7E-08 5.8E-13 94.2 -1.2 50 796-849 16-66 (117)
57 3hcs_A TNF receptor-associated 98.3 1.9E-07 6.3E-12 92.4 3.8 54 796-850 12-65 (170)
58 2yu4_A E3 SUMO-protein ligase 98.3 2.6E-07 9E-12 83.2 3.9 47 800-847 5-59 (94)
59 4ap4_A E3 ubiquitin ligase RNF 98.3 2.1E-07 7.3E-12 87.1 3.2 50 800-851 5-61 (133)
60 3na7_A HP0958; flagellar bioge 98.3 0.00038 1.3E-08 73.5 27.0 9 803-811 199-207 (256)
61 1i84_S Smooth muscle myosin he 98.2 2.2E-06 7.4E-11 108.2 10.4 30 106-135 331-367 (1184)
62 2ecl_A Ring-box protein 2; RNF 98.2 7.1E-07 2.4E-11 78.1 3.8 46 802-849 15-75 (81)
63 3htk_C E3 SUMO-protein ligase 98.2 6.7E-07 2.3E-11 94.5 4.2 55 795-850 174-232 (267)
64 4ap4_A E3 ubiquitin ligase RNF 98.2 5.8E-07 2E-11 84.1 3.1 55 800-856 70-133 (133)
65 3dpl_R Ring-box protein 1; ubi 98.0 3.3E-06 1.1E-10 78.0 4.3 47 801-849 36-100 (106)
66 1wim_A KIAA0161 protein; ring 97.8 7.2E-06 2.5E-10 73.4 2.5 46 801-847 4-61 (94)
67 3na7_A HP0958; flagellar bioge 97.7 0.007 2.4E-07 63.8 25.0 68 549-623 12-79 (256)
68 3vkg_A Dynein heavy chain, cyt 97.7 0.0069 2.4E-07 82.6 29.6 163 574-744 1932-2104(3245)
69 4a0k_B E3 ubiquitin-protein li 97.7 5.5E-06 1.9E-10 77.9 0.2 46 802-849 48-111 (117)
70 2d8s_A Cellular modulator of i 97.6 3.6E-05 1.2E-09 67.5 3.8 53 800-853 13-73 (80)
71 2v71_A Nuclear distribution pr 97.6 0.02 6.7E-07 57.9 23.7 134 591-746 50-183 (189)
72 2bay_A PRE-mRNA splicing facto 97.4 5.6E-05 1.9E-09 62.9 2.8 52 802-855 3-57 (61)
73 2dfs_A Myosin-5A; myosin-V, in 97.4 0.0051 1.7E-07 77.0 21.2 27 646-672 984-1010(1080)
74 3vk6_A E3 ubiquitin-protein li 97.3 0.00016 5.5E-09 65.7 4.1 49 804-853 3-52 (101)
75 3vkg_A Dynein heavy chain, cyt 97.0 0.16 5.4E-06 69.8 29.5 9 485-493 1764-1772(3245)
76 3o0z_A RHO-associated protein 97.0 0.17 5.9E-06 50.1 22.3 74 581-654 67-140 (168)
77 2dfs_A Myosin-5A; myosin-V, in 96.9 0.032 1.1E-06 69.9 21.2 33 640-672 985-1017(1080)
78 2efr_A General control protein 96.9 0.39 1.3E-05 47.1 25.5 48 640-687 71-118 (155)
79 2v71_A Nuclear distribution pr 96.8 0.28 9.6E-06 49.5 23.1 29 718-747 149-177 (189)
80 2efr_A General control protein 96.4 0.77 2.6E-05 45.0 25.7 74 592-679 65-138 (155)
81 3oja_B Anopheles plasmodium-re 96.3 0.029 1E-06 65.0 14.2 21 727-747 561-581 (597)
82 3o0z_A RHO-associated protein 96.3 0.97 3.3E-05 44.8 22.8 61 553-617 22-82 (168)
83 4gkw_A Spindle assembly abnorm 96.2 0.4 1.4E-05 45.3 18.3 130 505-641 7-156 (167)
84 2ocy_A RAB guanine nucleotide 96.0 1.4 4.6E-05 43.2 21.7 39 641-679 53-91 (154)
85 2fxo_A Myosin heavy chain, car 95.5 1.7 5.7E-05 41.1 19.9 37 577-613 14-50 (129)
86 1vyx_A ORF K3, K3RING; zinc-bi 95.1 0.013 4.4E-07 48.5 3.3 49 801-850 5-59 (60)
87 3k1l_B Fancl; UBC, ring, RWD, 94.9 0.0042 1.4E-07 68.0 -0.3 52 800-852 306-375 (381)
88 2ct0_A Non-SMC element 1 homol 94.6 0.033 1.1E-06 48.1 4.6 52 800-852 13-66 (74)
89 2fxo_A Myosin heavy chain, car 94.5 3.3 0.00011 39.1 19.8 43 641-683 43-85 (129)
90 3u1c_A Tropomyosin alpha-1 cha 94.5 1.8 6.2E-05 39.3 16.2 39 641-679 32-70 (101)
91 1f5n_A Interferon-induced guan 94.5 10 0.00035 44.6 28.8 97 650-746 484-582 (592)
92 3u59_A Tropomyosin beta chain; 94.3 1.8 6.1E-05 39.2 15.7 39 641-679 32-70 (101)
93 2b9c_A Striated-muscle alpha t 94.0 0.38 1.3E-05 46.8 11.2 42 577-618 53-94 (147)
94 2i1j_A Moesin; FERM, coiled-co 93.5 0.095 3.3E-06 61.4 7.3 55 576-630 342-396 (575)
95 3oja_A Leucine-rich immune mol 93.2 1.8 6E-05 49.0 16.8 47 647-693 436-482 (487)
96 3u1c_A Tropomyosin alpha-1 cha 92.9 4.7 0.00016 36.6 15.9 12 725-736 87-98 (101)
97 2v4h_A NF-kappa-B essential mo 92.9 1.7 5.9E-05 40.0 12.8 33 637-669 29-61 (110)
98 1f5n_A Interferon-induced guan 92.9 15 0.0005 43.2 24.3 23 505-527 375-397 (592)
99 3ghg_A Fibrinogen alpha chain; 92.6 1.2 4.2E-05 50.8 13.9 108 505-627 53-161 (562)
100 2ocy_A RAB guanine nucleotide 91.5 11 0.00037 36.8 21.8 36 580-615 55-90 (154)
101 3ol1_A Vimentin; structural ge 91.5 7 0.00024 36.4 15.7 92 645-744 19-114 (119)
102 3u59_A Tropomyosin beta chain; 91.2 8.3 0.00028 34.8 15.9 11 725-735 87-97 (101)
103 3tnu_A Keratin, type I cytoske 90.4 3.9 0.00013 38.7 13.1 25 591-615 78-102 (131)
104 2i1j_A Moesin; FERM, coiled-co 90.4 0.3 1E-05 57.2 6.4 52 574-625 333-384 (575)
105 2v66_B Nuclear distribution pr 90.3 11 0.00038 34.9 15.6 80 509-588 3-89 (111)
106 3mq9_A Bone marrow stromal ant 90.3 5.2 0.00018 44.9 16.4 35 646-680 397-431 (471)
107 2v4h_A NF-kappa-B essential mo 90.2 4.8 0.00016 37.1 12.7 41 639-679 62-102 (110)
108 3tnu_B Keratin, type II cytosk 90.0 5.9 0.0002 37.3 14.0 25 591-615 76-100 (129)
109 2jun_A Midline-1; B-BOX, TRIM, 89.4 0.12 4.2E-06 46.2 1.7 31 802-833 3-36 (101)
110 1ic2_A Tropomyosin alpha chain 89.0 3.2 0.00011 36.1 10.5 42 641-682 29-70 (81)
111 3ghg_A Fibrinogen alpha chain; 89.0 5.8 0.0002 45.4 15.0 40 643-682 114-153 (562)
112 3hnw_A Uncharacterized protein 88.9 12 0.00041 35.8 15.2 45 640-684 76-120 (138)
113 3iox_A AGI/II, PA; alpha helix 88.7 10 0.00035 43.2 16.8 16 603-618 40-55 (497)
114 1otr_A Protein CUE2; protein-p 88.7 0.28 9.5E-06 39.2 3.1 35 178-212 6-40 (49)
115 1deq_A Fibrinogen (alpha chain 88.5 14 0.0005 40.7 17.3 51 633-683 107-157 (390)
116 2b9c_A Striated-muscle alpha t 88.4 17 0.00059 35.1 16.1 69 598-666 53-121 (147)
117 3i00_A HIP-I, huntingtin-inter 88.2 1.8 6E-05 40.7 8.7 25 503-527 9-33 (120)
118 3q8t_A Beclin-1; autophagy, AT 88.0 15 0.0005 33.1 15.5 40 628-667 14-53 (96)
119 3s84_A Apolipoprotein A-IV; fo 87.7 31 0.0011 36.5 27.6 38 507-544 13-50 (273)
120 3jsv_C NF-kappa-B essential mo 87.6 4.2 0.00014 36.5 10.2 30 638-667 8-37 (94)
121 2xzr_A Immunoglobulin-binding 86.9 17 0.00058 32.7 16.5 73 637-709 11-83 (114)
122 3mq7_A Bone marrow stromal ant 86.8 13 0.00044 34.6 13.2 72 664-746 29-100 (121)
123 2e7s_A RAB guanine nucleotide 86.5 3.6 0.00012 39.3 9.8 38 641-678 41-78 (135)
124 1ic2_A Tropomyosin alpha chain 86.0 12 0.00041 32.4 12.3 31 641-671 43-73 (81)
125 3ol1_A Vimentin; structural ge 86.0 22 0.00075 33.0 16.5 42 581-622 18-59 (119)
126 3q8t_A Beclin-1; autophagy, AT 85.9 19 0.00065 32.3 15.1 82 584-672 12-93 (96)
127 2eqb_B RAB guanine nucleotide 85.8 20 0.00068 32.4 13.8 53 646-698 12-64 (97)
128 1deq_A Fibrinogen (alpha chain 85.2 20 0.0007 39.5 16.1 41 578-618 115-155 (390)
129 3mq7_A Bone marrow stromal ant 84.8 25 0.00086 32.7 15.4 37 646-682 71-107 (121)
130 2jee_A YIIU; FTSZ, septum, coi 84.5 10 0.00035 33.2 10.9 56 640-695 14-69 (81)
131 3hnw_A Uncharacterized protein 84.5 8.3 0.00029 36.9 11.5 42 641-682 84-125 (138)
132 3tnu_A Keratin, type I cytoske 84.2 17 0.00056 34.3 13.4 19 585-603 47-65 (131)
133 3tnu_B Keratin, type II cytosk 83.9 21 0.00071 33.5 13.8 12 591-602 51-62 (129)
134 1x79_B RAB GTPase binding effe 83.7 22 0.00075 33.0 13.3 25 722-746 75-99 (112)
135 2cs3_A Protein C14ORF4, MY039 82.6 0.6 2.1E-05 40.8 2.3 35 800-835 13-51 (93)
136 2ko5_A Ring finger protein Z; 82.5 0.33 1.1E-05 43.6 0.7 54 798-854 24-77 (99)
137 3qh9_A Liprin-beta-2; coiled-c 81.9 13 0.00043 32.5 10.2 62 621-682 15-76 (81)
138 1m1j_B Fibrinogen beta chain; 81.6 40 0.0014 38.4 17.3 17 728-744 179-195 (464)
139 2no2_A HIP-I, huntingtin-inter 81.5 32 0.0011 31.5 16.6 41 642-682 50-90 (107)
140 3iox_A AGI/II, PA; alpha helix 81.4 27 0.00094 39.8 15.7 18 602-619 46-63 (497)
141 3jsv_C NF-kappa-B essential mo 81.3 13 0.00044 33.4 10.4 42 638-679 39-80 (94)
142 3ghg_B Fibrinogen beta chain; 80.5 23 0.00079 40.2 14.8 90 572-663 91-180 (461)
143 3k29_A Putative uncharacterize 80.5 47 0.0016 32.8 22.8 95 577-679 17-111 (169)
144 3haj_A Human pacsin2 F-BAR; pa 80.3 84 0.0029 35.6 24.2 34 515-548 28-64 (486)
145 3a7p_A Autophagy protein 16; c 80.3 43 0.0015 32.6 14.5 32 577-608 97-128 (152)
146 2jee_A YIIU; FTSZ, septum, coi 79.5 24 0.00082 30.9 11.3 31 585-615 8-38 (81)
147 2oto_A M protein; helical coil 79.3 46 0.0016 32.0 20.5 9 730-738 144-152 (155)
148 2lw1_A ABC transporter ATP-bin 78.4 13 0.00044 32.7 9.7 47 640-686 30-82 (89)
149 3s4r_A Vimentin; alpha-helix, 78.3 37 0.0013 30.3 13.4 31 585-615 11-41 (93)
150 3swk_A Vimentin; cytoskeleton, 78.1 24 0.00083 31.0 11.3 35 587-621 4-38 (86)
151 3swk_A Vimentin; cytoskeleton, 78.1 26 0.0009 30.8 11.5 55 649-703 3-57 (86)
152 3nw0_A Non-structural maintena 76.2 1.8 6.1E-05 45.2 4.0 50 801-851 179-230 (238)
153 3bas_A Myosin heavy chain, str 75.7 31 0.0011 30.4 11.4 26 578-603 16-41 (89)
154 2zuo_A MVP, major vault protei 75.1 1.6E+02 0.0054 35.9 23.2 15 451-465 527-541 (861)
155 2zqm_A Prefoldin beta subunit 74.6 34 0.0012 30.8 11.8 40 581-620 68-107 (117)
156 2eqb_B RAB guanine nucleotide 74.4 50 0.0017 29.9 15.2 42 639-680 19-60 (97)
157 2e7s_A RAB guanine nucleotide 72.9 18 0.00061 34.6 9.5 31 585-615 48-78 (135)
158 1fxk_A Prefoldin; archaeal pro 72.3 37 0.0013 30.1 11.3 38 582-619 64-101 (107)
159 1l8d_A DNA double-strand break 72.0 41 0.0014 30.2 11.6 23 591-613 18-40 (112)
160 2b5u_A Colicin E3; high resolu 71.7 1.5E+02 0.005 34.0 21.6 13 496-509 269-281 (551)
161 1m1j_A Fibrinogen alpha subuni 69.7 1E+02 0.0035 34.9 16.0 51 632-682 104-154 (491)
162 4gkw_A Spindle assembly abnorm 69.1 79 0.0027 29.9 21.7 22 644-665 58-79 (167)
163 3haj_A Human pacsin2 F-BAR; pa 68.2 1.6E+02 0.0056 33.2 28.5 12 516-527 22-33 (486)
164 4h22_A Leucine-rich repeat fli 67.8 48 0.0016 30.2 10.7 39 577-615 3-41 (103)
165 2b5u_A Colicin E3; high resolu 67.4 1.8E+02 0.0061 33.3 22.9 11 517-527 292-302 (551)
166 1x79_B RAB GTPase binding effe 66.6 82 0.0028 29.2 13.3 20 727-746 87-106 (112)
167 1gmj_A ATPase inhibitor; coile 65.9 43 0.0015 29.5 9.6 28 652-679 50-77 (84)
168 3i00_A HIP-I, huntingtin-inter 64.7 30 0.001 32.3 9.2 13 671-683 44-56 (120)
169 3ajw_A Flagellar FLIJ protein; 64.3 92 0.0032 28.9 18.6 35 659-693 80-114 (150)
170 3ni0_A Bone marrow stromal ant 63.6 77 0.0026 28.4 10.9 18 726-743 69-86 (99)
171 2di0_A Activating signal coint 62.7 6.2 0.00021 33.8 3.7 38 175-212 12-49 (71)
172 2v66_B Nuclear distribution pr 62.3 98 0.0034 28.6 17.7 23 599-621 5-27 (111)
173 1ify_A HHR23A, UV excision rep 61.8 5.8 0.0002 31.2 3.2 27 105-131 7-33 (49)
174 1zbd_B Rabphilin-3A; G protein 60.9 14 0.00046 35.3 6.2 30 801-831 54-88 (134)
175 1wt6_A Myotonin-protein kinase 60.5 87 0.003 27.4 10.5 20 727-746 55-74 (81)
176 1fxk_A Prefoldin; archaeal pro 59.5 93 0.0032 27.4 11.5 35 580-614 69-103 (107)
177 1m1j_C Fibrinogen gamma chain; 59.5 1.2E+02 0.0042 33.9 14.5 32 571-602 33-64 (409)
178 3ibp_A Chromosome partition pr 59.4 93 0.0032 33.3 12.7 35 663-697 20-57 (302)
179 1jcd_A Major outer membrane li 58.6 41 0.0014 27.1 7.5 38 578-615 6-43 (52)
180 3ajw_A Flagellar FLIJ protein; 58.6 1.2E+02 0.004 28.2 17.3 35 644-678 72-106 (150)
181 1z96_A DNA-damage, UBA-domain 57.2 8.2 0.00028 28.4 3.2 25 106-130 4-28 (40)
182 3hhm_B NISH2 P85alpha; PI3KCA, 56.6 2.3E+02 0.008 31.1 16.8 54 626-679 199-252 (373)
183 1x8y_A Lamin A/C; structural p 56.1 71 0.0024 27.9 9.5 36 577-615 18-53 (86)
184 3k29_A Putative uncharacterize 55.7 1.6E+02 0.0055 29.0 21.7 35 528-562 17-51 (169)
185 4h22_A Leucine-rich repeat fli 55.6 1E+02 0.0035 28.1 10.5 45 632-676 9-53 (103)
186 3a7p_A Autophagy protein 16; c 55.4 1.5E+02 0.0053 28.7 14.0 11 666-676 102-112 (152)
187 3ghg_C Fibrinogen gamma chain; 55.0 44 0.0015 37.4 9.9 33 571-603 33-65 (411)
188 1dv0_A DNA repair protein HHR2 53.8 7.3 0.00025 30.4 2.5 25 107-131 5-29 (47)
189 2g3q_A Protein YBL047C; endocy 53.5 8.1 0.00028 29.2 2.6 24 107-130 5-28 (43)
190 1gk4_A Vimentin; intermediate 53.1 1.1E+02 0.0039 26.4 12.5 25 591-615 27-51 (84)
191 3m62_A Ubiquitin conjugation f 52.7 20 0.00068 44.3 7.2 54 797-851 886-939 (968)
192 2knz_A Ubiquilin-4; cytoplasm, 52.6 12 0.0004 29.9 3.6 40 104-153 9-49 (53)
193 3cvf_A Homer-3, homer protein 52.5 86 0.0029 27.3 9.2 17 599-615 15-31 (79)
194 2x3v_A Syndapin I, protein kin 51.9 2.4E+02 0.0081 29.8 25.8 34 515-548 26-62 (337)
195 3cve_A Homer protein homolog 1 51.4 1.2E+02 0.004 26.0 11.0 30 590-619 7-36 (72)
196 3plt_A Sphingolipid long chain 50.9 2.3E+02 0.0079 29.4 19.6 35 640-674 105-145 (234)
197 3aco_A Pacsin2, protein kinase 50.5 2.6E+02 0.0088 29.8 18.3 35 514-548 34-71 (350)
198 3iv1_A Tumor susceptibility ge 50.3 1.3E+02 0.0043 26.2 9.9 17 600-616 14-30 (78)
199 1jcd_A Major outer membrane li 50.3 67 0.0023 25.8 7.5 41 583-623 4-44 (52)
200 3efg_A Protein SLYX homolog; x 50.2 43 0.0015 29.0 7.0 50 635-684 10-59 (78)
201 2jy5_A Ubiquilin-1; UBA, alter 50.0 8.9 0.00031 30.5 2.5 37 105-151 11-48 (52)
202 1gmj_A ATPase inhibitor; coile 49.6 53 0.0018 28.9 7.4 29 718-746 45-73 (84)
203 4emc_A Monopolin complex subun 49.4 53 0.0018 33.0 8.4 51 632-682 6-56 (190)
204 3abh_A Pacsin2, protein kinase 49.3 2.5E+02 0.0085 29.3 20.6 23 514-536 34-56 (312)
205 1m1j_C Fibrinogen gamma chain; 49.1 2.3E+02 0.0078 31.7 14.5 37 640-676 85-121 (409)
206 4g3o_A E3 ubiquitin-protein li 48.3 15 0.00052 30.2 3.6 39 168-208 10-48 (58)
207 2fiy_A Protein FDHE homolog; F 48.0 3.2 0.00011 44.9 -0.6 46 800-847 180-231 (309)
208 1vg5_A RSGI RUH-014, rhomboid 48.0 8.8 0.0003 32.9 2.3 37 107-153 30-66 (73)
209 2zet_C Melanophilin; complex, 47.2 30 0.001 33.6 6.2 29 801-830 67-100 (153)
210 2p22_C Protein SRN2; endosome, 47.0 2.3E+02 0.008 28.3 15.4 59 516-585 62-120 (192)
211 3tul_A Cell invasion protein S 46.5 2.1E+02 0.0072 27.6 13.7 89 576-678 20-118 (158)
212 1weo_A Cellulose synthase, cat 46.3 14 0.00047 33.0 3.2 49 801-850 15-70 (93)
213 2ejs_A Autocrine motility fact 45.2 18 0.00061 29.8 3.6 32 176-208 13-44 (58)
214 2w83_C C-JUN-amino-terminal ki 44.6 1.5E+02 0.0053 25.5 9.5 42 572-613 33-74 (77)
215 2dhy_A CUE domain-containing p 44.5 18 0.0006 30.6 3.5 38 174-211 16-53 (67)
216 1z60_A TFIIH basal transcripti 44.3 11 0.00037 31.2 2.1 40 803-844 16-58 (59)
217 1wji_A Tudor domain containing 43.8 15 0.00053 30.4 3.1 36 107-152 10-45 (63)
218 3abh_A Pacsin2, protein kinase 43.7 3E+02 0.01 28.6 23.6 11 517-527 30-40 (312)
219 4dzn_A Coiled-coil peptide CC- 43.2 47 0.0016 23.5 4.8 21 649-669 5-25 (33)
220 2efl_A Formin-binding protein 43.1 2.9E+02 0.01 28.3 26.3 15 658-672 142-156 (305)
221 1wgl_A TOLL-interacting protei 43.0 14 0.00049 30.3 2.7 35 178-212 11-45 (59)
222 3d5a_X RF1, peptide chain rele 41.9 66 0.0023 35.4 8.5 54 509-562 3-60 (354)
223 2k48_A Nucleoprotein; viral pr 41.6 1.9E+02 0.0064 26.4 9.9 22 575-596 34-55 (107)
224 1m1j_A Fibrinogen alpha subuni 41.3 4.4E+02 0.015 29.9 16.0 21 638-658 138-158 (491)
225 3cvf_A Homer-3, homer protein 41.2 1.8E+02 0.0061 25.3 9.6 28 591-618 14-41 (79)
226 2ekf_A Ancient ubiquitous prot 40.6 21 0.00072 29.6 3.3 32 176-208 13-44 (61)
227 2dq0_A Seryl-tRNA synthetase; 40.4 81 0.0028 35.7 9.4 28 577-604 32-59 (455)
228 4fla_A Regulation of nuclear P 40.3 2.6E+02 0.009 27.0 12.7 36 663-698 71-106 (152)
229 1wt6_A Myotonin-protein kinase 40.2 1.9E+02 0.0064 25.3 10.4 47 652-698 16-62 (81)
230 2efl_A Formin-binding protein 40.2 3.2E+02 0.011 27.9 26.9 24 513-536 18-41 (305)
231 2yy0_A C-MYC-binding protein; 39.7 25 0.00084 28.3 3.5 30 647-676 20-49 (53)
232 2ekk_A UBA domain from E3 ubiq 39.7 9.7 0.00033 29.5 1.1 35 106-151 9-43 (47)
233 2oo9_A E3 ubiquitin-protein li 39.6 21 0.00071 28.0 2.9 25 107-131 5-29 (46)
234 3ni0_A Bone marrow stromal ant 39.5 2.1E+02 0.0072 25.7 11.7 18 646-663 67-84 (99)
235 3iyk_A VP5; icosahedral virus; 39.4 4.9E+02 0.017 29.8 19.2 145 503-678 84-229 (526)
236 1go4_E MAD1 (mitotic arrest de 39.1 1.2E+02 0.0042 27.4 8.4 31 590-620 12-42 (100)
237 3s4r_A Vimentin; alpha-helix, 38.8 2.1E+02 0.0071 25.3 13.0 38 581-618 54-91 (93)
238 2ooa_A E3 ubiquitin-protein li 38.0 21 0.00073 28.7 2.8 35 108-145 13-47 (52)
239 2wt7_B Transcription factor MA 37.5 2.2E+02 0.0075 25.3 10.3 37 640-676 49-85 (90)
240 3thf_A Protein shroom; coiled- 37.4 3.3E+02 0.011 27.3 25.8 23 725-747 163-185 (190)
241 3hhm_B NISH2 P85alpha; PI3KCA, 37.1 4.6E+02 0.016 28.8 17.7 10 434-443 78-87 (373)
242 3aco_A Pacsin2, protein kinase 36.6 4.1E+02 0.014 28.2 22.4 11 517-527 30-40 (350)
243 1sjj_A Actinin; 3-helix bundle 36.0 6.3E+02 0.021 30.1 26.7 8 146-153 71-78 (863)
244 1fxk_C Protein (prefoldin); ar 35.9 2.6E+02 0.0089 25.6 10.7 30 584-613 89-118 (133)
245 1wj7_A Hypothetical protein (R 35.7 41 0.0014 30.8 4.7 59 86-154 17-78 (104)
246 2lw1_A ABC transporter ATP-bin 35.6 1.3E+02 0.0044 26.2 8.0 16 598-613 30-45 (89)
247 3uux_B Mitochondrial division 35.2 2.6E+02 0.0089 29.1 11.2 42 624-665 183-224 (242)
248 3u06_A Protein claret segregat 35.0 83 0.0028 35.2 8.2 6 721-726 49-54 (412)
249 2juj_A E3 ubiquitin-protein li 34.5 27 0.00093 28.4 3.0 35 108-145 9-43 (56)
250 2crn_A Ubash3A protein; compac 34.5 16 0.00055 30.4 1.7 23 109-131 12-34 (64)
251 3l4q_C Phosphatidylinositol 3- 33.7 3.6E+02 0.012 26.6 17.4 44 636-679 100-143 (170)
252 1ci6_A Transcription factor AT 33.7 2E+02 0.0068 23.6 8.5 36 640-675 24-59 (63)
253 3i2w_A Syndapin, LD46328P; EFC 33.6 4.1E+02 0.014 27.2 17.7 188 514-701 13-225 (290)
254 2dak_A Ubiquitin carboxyl-term 33.4 18 0.00061 29.8 1.8 35 107-151 10-44 (63)
255 1uii_A Geminin; human, DNA rep 32.8 2.2E+02 0.0075 25.0 8.6 20 655-674 55-74 (83)
256 1vek_A UBP14, ubiquitin-specif 32.2 21 0.00073 31.2 2.3 26 106-131 29-54 (84)
257 3lay_A Zinc resistance-associa 32.0 2.3E+02 0.0077 28.1 9.9 22 597-618 113-134 (175)
258 2ke4_A CDC42-interacting prote 32.0 2.5E+02 0.0085 25.2 9.3 27 582-608 61-87 (98)
259 2p2u_A HOST-nuclease inhibitor 31.6 2.1E+02 0.0073 27.9 9.6 57 690-746 18-74 (171)
260 4dzn_A Coiled-coil peptide CC- 31.6 93 0.0032 22.0 4.8 21 645-665 8-28 (33)
261 4emc_A Monopolin complex subun 31.4 2.2E+02 0.0076 28.6 9.6 37 642-678 23-59 (190)
262 2dag_A Ubiquitin carboxyl-term 31.2 21 0.00073 30.4 2.0 25 107-131 10-34 (74)
263 3teq_A Stromal interaction mol 30.6 2.2E+02 0.0074 25.9 8.5 77 606-688 16-92 (101)
264 2xus_A Breast cancer metastasi 30.1 1.3E+02 0.0045 23.9 6.1 40 632-673 6-45 (49)
265 1vej_A Riken cDNA 4931431F19; 30.0 52 0.0018 28.2 4.2 40 105-154 28-68 (74)
266 2efk_A CDC42-interacting prote 29.9 4.6E+02 0.016 26.7 27.0 34 596-629 115-148 (301)
267 1gqe_A Release factor 2, RF2; 29.7 2.1E+02 0.007 31.6 10.0 24 512-535 28-51 (365)
268 1lwu_C Fibrinogen gamma chain; 29.6 1.1E+02 0.0037 33.3 7.7 20 651-670 17-36 (323)
269 1wr1_B Ubiquitin-like protein 28.9 57 0.0019 26.6 4.1 29 103-131 14-43 (58)
270 2bwb_A Ubiquitin-like protein 28.8 39 0.0013 26.1 3.0 28 104-131 5-33 (46)
271 2xzr_A Immunoglobulin-binding 28.2 3.3E+02 0.011 24.5 17.7 30 580-609 10-39 (114)
272 1whc_A RSGI RUH-027, UBA/UBX 3 28.0 32 0.0011 28.4 2.5 37 108-153 11-47 (64)
273 1zbt_A RF-1, peptide chain rel 27.8 1E+02 0.0036 34.0 7.2 54 509-562 17-74 (371)
274 1veg_A NEDD8 ultimate buster-1 27.6 24 0.00084 30.9 1.8 38 106-153 29-66 (83)
275 1wiv_A UBP14, ubiquitin-specif 27.1 30 0.001 29.4 2.3 38 107-154 30-67 (73)
276 1nlw_A MAD protein, MAX dimeri 26.9 1E+02 0.0035 26.6 5.6 33 637-669 45-77 (80)
277 2w83_C C-JUN-amino-terminal ki 26.8 3.1E+02 0.011 23.7 9.7 38 634-671 32-69 (77)
278 3thf_A Protein shroom; coiled- 26.8 5E+02 0.017 26.1 24.1 23 505-527 15-37 (190)
279 3m9b_A Proteasome-associated A 26.8 64 0.0022 33.8 5.1 38 641-678 56-93 (251)
280 1gd2_E Transcription factor PA 26.7 2.7E+02 0.0091 23.6 8.0 33 640-672 30-62 (70)
281 2v0o_A FCHO2, FCH domain only 26.6 5E+02 0.017 26.1 23.9 158 537-697 90-247 (276)
282 2cpw_A CBL-interacting protein 26.6 30 0.001 28.7 2.1 35 108-151 21-55 (64)
283 3m9b_A Proteasome-associated A 26.0 57 0.002 34.2 4.5 23 649-671 57-79 (251)
284 2d9s_A CBL E3 ubiquitin protei 25.9 35 0.0012 27.5 2.3 34 109-145 12-45 (53)
285 3ter_A Mammalian stromal inter 25.9 3.9E+02 0.013 25.4 9.8 35 655-689 92-126 (136)
286 3qh9_A Liprin-beta-2; coiled-c 25.2 3.4E+02 0.012 23.7 10.0 19 545-563 23-41 (81)
287 3htk_A Structural maintenance 25.1 2.6E+02 0.0088 22.2 8.8 21 651-671 24-44 (60)
288 1nkp_B MAX protein, MYC proto- 25.0 1.4E+02 0.0048 25.5 6.2 33 637-669 45-77 (83)
289 3qne_A Seryl-tRNA synthetase, 25.0 2E+02 0.0067 32.9 9.1 20 581-600 38-57 (485)
290 3mov_A Lamin-B1; LMNB1, B-type 25.0 3.2E+02 0.011 24.2 8.7 25 591-615 38-62 (95)
291 3d5a_X RF1, peptide chain rele 24.9 2E+02 0.0069 31.6 8.8 25 720-744 72-96 (354)
292 2ap3_A Conserved hypothetical 24.8 5.5E+02 0.019 25.9 15.9 21 582-602 86-106 (199)
293 4ae4_A Ubiquitin-associated pr 24.8 42 0.0014 31.2 2.9 91 107-212 9-110 (118)
294 3ghg_B Fibrinogen beta chain; 24.7 8E+02 0.027 27.8 14.4 18 660-677 163-180 (461)
295 4fla_A Regulation of nuclear P 24.7 4.7E+02 0.016 25.1 13.4 11 668-678 115-125 (152)
296 3mtu_E Head morphogenesis prot 24.7 2.3E+02 0.008 24.5 7.2 41 636-676 34-74 (77)
297 4f61_I Stathmin-like domain R4 24.1 6.2E+02 0.021 26.3 22.8 9 519-527 45-53 (240)
298 2nrj_A HBL B protein; enteroto 23.5 7.2E+02 0.025 26.8 22.1 48 505-552 57-104 (346)
299 1nkp_A C-MYC, MYC proto-oncoge 23.3 1.4E+02 0.0049 26.1 6.0 36 636-671 49-84 (88)
300 3i2d_A E3 SUMO-protein ligase 23.2 36 0.0012 37.6 2.5 51 798-849 245-299 (371)
301 3efg_A Protein SLYX homolog; x 23.2 2.2E+02 0.0075 24.5 7.0 36 644-679 12-47 (78)
302 3r2p_A Apolipoprotein A-I; amp 23.2 5.3E+02 0.018 25.1 12.3 10 542-551 15-24 (185)
303 2wvr_A Geminin; DNA replicatio 22.3 4.6E+02 0.016 26.6 10.0 18 514-531 37-54 (209)
304 2l5g_B Putative uncharacterize 22.2 1.9E+02 0.0066 22.2 5.5 25 638-662 8-32 (42)
305 1g8x_A Myosin II heavy chain f 22.1 3.7E+02 0.013 33.5 11.4 21 111-131 329-355 (1010)
306 1ixs_A Holliday junction DNA h 22.0 97 0.0033 25.4 4.3 45 106-151 17-61 (62)
307 2x3v_A Syndapin I, protein kin 22.0 7E+02 0.024 26.1 30.9 12 516-527 20-31 (337)
308 3cl3_D NF-kappa-B essential mo 21.9 2.1E+02 0.0072 27.0 7.0 15 647-661 63-77 (130)
309 1lwu_C Fibrinogen gamma chain; 21.8 2E+02 0.007 31.1 8.0 28 641-668 21-48 (323)
310 1joc_A EEA1, early endosomal a 21.5 4.6E+02 0.016 24.1 9.5 28 803-831 70-101 (125)
311 3lss_A Seryl-tRNA synthetase; 21.4 3.9E+02 0.013 30.5 10.7 82 577-658 38-137 (484)
312 2dai_A Ubadc1, ubiquitin assoc 21.3 45 0.0015 29.1 2.3 25 106-130 29-53 (83)
313 3r6n_A Desmoplakin; spectrin r 21.2 9E+02 0.031 27.1 28.0 13 732-744 250-262 (450)
314 1ses_A Seryl-tRNA synthetase; 20.9 2.9E+02 0.0098 30.8 9.3 31 577-607 29-59 (421)
315 1k1f_A Breakpoint cluster regi 20.5 1.4E+02 0.0049 25.1 4.9 40 587-637 30-69 (72)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=104.79 Aligned_cols=55 Identities=31% Similarity=0.783 Sum_probs=49.3
Q ss_pred CCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEecCC
Q 002997 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRFAQP 859 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~~~~ 859 (859)
.....|+||++.+++++++||||.+||..|+.. ...||+||.+|..++++|...|
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~i~~~~s 67 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESFALSGPSS 67 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEECCCSSCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhceEEeecCCC
Confidence 346789999999999999999999999999983 4799999999999999987654
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.11 E-value=2.8e-11 Score=101.52 Aligned_cols=56 Identities=27% Similarity=0.513 Sum_probs=49.8
Q ss_pred CccccccccccCcCcEEe--CCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEec
Q 002997 801 RERECVVCLAEEKSVVFL--PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRFA 857 (859)
Q Consensus 801 ~~~~C~ICle~~~~~Vll--pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~~ 857 (859)
....|+||++.+++++++ ||||.+||..|+..++.. ...||+||.+|..++++|++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhceEEEecC
Confidence 446899999999999888 999999999999988764 37899999999999999974
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.10 E-value=3.3e-11 Score=101.36 Aligned_cols=56 Identities=29% Similarity=0.633 Sum_probs=50.1
Q ss_pred CccccccccccCcCcEEe--CCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEec
Q 002997 801 RERECVVCLAEEKSVVFL--PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRFA 857 (859)
Q Consensus 801 ~~~~C~ICle~~~~~Vll--pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~~ 857 (859)
....|+||++.+++++++ ||||.+||..|+..++.. ...||+||.+|..++++|+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhceEeeecC
Confidence 456899999999999998 999998999999988763 46899999999999999973
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.06 E-value=2e-11 Score=107.00 Aligned_cols=58 Identities=34% Similarity=0.793 Sum_probs=51.3
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEecC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRFAQ 858 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~~~ 858 (859)
.+.++....|+||++.+.+++++||||.+||..|+.. ...||+||.+|..++++|+..
T Consensus 12 ~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~~~i~~p~ 69 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQ-----LQSCPVCRSRVEHVQHVYLPT 69 (79)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTT-----CSBCTTTCCBCCEEEECBCTT
T ss_pred HHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHh-----cCcCCCCCchhhCeEEEEeCc
Confidence 4556677899999999999999999999999999983 459999999999999999764
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.06 E-value=1.3e-11 Score=106.59 Aligned_cols=56 Identities=30% Similarity=0.838 Sum_probs=50.2
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEe
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRF 856 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~ 856 (859)
.+.+++...|+||++.+.+++++||||.+||..|+..+ ..||+||.+|..+++||+
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEEEECBC
T ss_pred HhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCcEEEee
Confidence 34556778999999999999999999999999998843 799999999999999986
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.7e-11 Score=105.91 Aligned_cols=56 Identities=30% Similarity=0.854 Sum_probs=49.7
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEe
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRF 856 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~ 856 (859)
.+.+.....|+||++.+.+++++||||.+||..|+.. ...||+||.+|..+++||+
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCCCBCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCcEEEec
Confidence 3455667899999999999999999999999999973 4799999999999999986
No 7
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.00 E-value=2.7e-10 Score=109.48 Aligned_cols=51 Identities=31% Similarity=0.684 Sum_probs=44.3
Q ss_pred CCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCce
Q 002997 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRI 852 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i 852 (859)
+++..|+||++.+.++|++||||. ||..|+..|+. ....||+||.+|....
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMK-RKIECPICRKDIKSKT 101 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTT-TCSBCTTTCCBCCCEE
T ss_pred cccCCCcccCcccCCceECCCCCC-ccHHHHHHHHH-cCCcCCCCCCcCCCCC
Confidence 345679999999999999999999 99999999886 4478999999997653
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=6.4e-10 Score=94.90 Aligned_cols=58 Identities=22% Similarity=0.462 Sum_probs=49.5
Q ss_pred cccccCCCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCccccccCceE
Q 002997 794 SLMGGLKRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQ 853 (859)
Q Consensus 794 e~~e~l~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~ 853 (859)
..++.++....|+||++.+.+++.+ +|||. ||..|+..|... ...||+||.+|...-.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYY-SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHH-CSSCTTTCCCCCSSCS
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHc-CCcCCCcCcccCcccc
Confidence 3456778889999999999999887 99999 999999998864 4799999999976543
No 9
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.2e-10 Score=93.32 Aligned_cols=54 Identities=19% Similarity=0.453 Sum_probs=47.3
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
.+.+.....|+||++.+.+++.++|||. ||..|+..|+......||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4556778899999999999999999999 99999999986556789999999864
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=92.71 Aligned_cols=54 Identities=28% Similarity=0.711 Sum_probs=46.8
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhc--CCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQ--GMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~--~~~~CP~CR~~i~~ 850 (859)
.+.+.....|+||++.+.++++++|||. ||..|+..|... ....||+||.+|..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4556778899999999999999999999 999999998862 45689999999864
No 11
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.89 E-value=9.3e-10 Score=94.57 Aligned_cols=56 Identities=20% Similarity=0.514 Sum_probs=47.9
Q ss_pred cccccCCCccccccccccCcCcEEeC-CCchhhhHHhHHHHhhcC-CCCCCCccccccC
Q 002997 794 SLMGGLKRERECVVCLAEEKSVVFLP-CAHQVLCQKCNELHEKQG-MNDCPSCRSPIQQ 850 (859)
Q Consensus 794 e~~e~l~~~~~C~ICle~~~~~Vllp-CgH~vfC~~Ci~~~~~~~-~~~CP~CR~~i~~ 850 (859)
...+.+.....|+||++.+.+++.++ |||. ||..|+..|+... ...||+||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34567788899999999999999999 9999 9999999988643 3689999998643
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.8e-09 Score=94.09 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=46.0
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
+.......|+||++.+.++++++|||. ||..|+..|... ...||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRA-TPRCYICDQPTGGI 62 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHH-CSBCSSSCCBCCSC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHC-CCcCCCcCcccccc
Confidence 445667899999999999999999999 999999998864 47899999998643
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=8.7e-10 Score=93.25 Aligned_cols=59 Identities=31% Similarity=0.720 Sum_probs=49.7
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEec
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRFA 857 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~~ 857 (859)
++.+.....|+||++.+.+ ++++|||. ||..|+..|.. ....||+||.+|.....+|..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~ 67 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSD-RHRNCPICRLQMTGANESSGP 67 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSC-CCSSCHHHHHCTTCCCCCCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHH-CcCcCCCcCCcccCCCccccC
Confidence 4556677899999999999 89999999 99999998776 457899999999877666543
No 14
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.84 E-value=1.9e-09 Score=93.13 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=46.6
Q ss_pred cCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 798 GLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
.+.....|+||++.+.++|+++|||. ||..|+..|+..+...||.||.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35677899999999999999999999 99999999997656789999999864
No 15
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.82 E-value=2.2e-09 Score=95.49 Aligned_cols=53 Identities=21% Similarity=0.555 Sum_probs=46.1
Q ss_pred cccCCCccccccccccCcCcEEeC-CCchhhhHHhHHHHhhc-CCCCCCCcccccc
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLP-CAHQVLCQKCNELHEKQ-GMNDCPSCRSPIQ 849 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~Vllp-CgH~vfC~~Ci~~~~~~-~~~~CP~CR~~i~ 849 (859)
.+.+.....|+||++.+.++++++ |||. ||..|+..|+.. +...||.||.++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 356678899999999999999999 9999 999999988854 3468999999973
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.5e-09 Score=91.02 Aligned_cols=50 Identities=30% Similarity=0.571 Sum_probs=43.6
Q ss_pred CCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 799 LKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 799 l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
......|+||++.+.++++++|||. ||..|+..|... ...||+||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3556789999999999999999999 999999987764 3789999999864
No 17
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.81 E-value=9.8e-10 Score=103.46 Aligned_cols=53 Identities=19% Similarity=0.562 Sum_probs=46.9
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
+.+.....|+||++.+.++++++|||. ||..|+..|+......||.||.+|..
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred HhCccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 445667899999999999999999999 99999999987555699999999976
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.81 E-value=3.4e-09 Score=92.07 Aligned_cols=54 Identities=31% Similarity=0.697 Sum_probs=47.0
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcC-----CCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQG-----MNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~-----~~~CP~CR~~i~~ 850 (859)
.+.+.....|+||++.+.++++++|||. ||..|+..|+... ...||.||.++..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4556778899999999999999999999 9999999888752 5789999999864
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=3.5e-09 Score=93.02 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=46.3
Q ss_pred cccCCCccccccccccCcC----cEEeCCCchhhhHHhHHHHhhcC--CCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKS----VVFLPCAHQVLCQKCNELHEKQG--MNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~----~VllpCgH~vfC~~Ci~~~~~~~--~~~CP~CR~~i~~ 850 (859)
.+.+.....|+||++.+.+ +++++|||. ||..|+..|.... ...||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4566778899999999988 999999999 9999999988753 4689999998753
No 20
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.6e-09 Score=89.43 Aligned_cols=52 Identities=27% Similarity=0.627 Sum_probs=44.5
Q ss_pred ccCCCccccccccccCcCc-------EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 797 GGLKRERECVVCLAEEKSV-------VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~-------VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
..+.....|+||++.+.++ ++++|||. ||..|+..|... ...||+||.+|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4456778999999998776 89999999 999999998875 4799999999864
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.79 E-value=1.2e-09 Score=94.22 Aligned_cols=54 Identities=28% Similarity=0.677 Sum_probs=46.4
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcC------CCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQG------MNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~------~~~CP~CR~~i~~ 850 (859)
.+.+.....|+||++.+.+++.++|||. ||..|+..|+... ...||.||.++..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4566778899999999999999999999 9999999877642 5689999999864
No 22
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=6e-09 Score=86.33 Aligned_cols=48 Identities=31% Similarity=0.725 Sum_probs=42.3
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhc--CCCCCCCc
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQ--GMNDCPSC 844 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~--~~~~CP~C 844 (859)
.+.++....|+||++.+.++++++|||. ||..|+..|+.. ....||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 4566788899999999999999999999 999999999864 45689998
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.76 E-value=1.6e-09 Score=98.62 Aligned_cols=54 Identities=20% Similarity=0.596 Sum_probs=47.5
Q ss_pred cccCCCccccccccccCcCcEE-eCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVF-LPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~Vl-lpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
...+.....|+||++.+.+++. ++|||. ||..|+..|+......||.||.+|..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cccCCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3456778899999999999999 999999 99999999987655689999999854
No 24
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=5.9e-09 Score=84.54 Aligned_cols=49 Identities=31% Similarity=0.671 Sum_probs=42.3
Q ss_pred ccccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhc--CCCCCCCc
Q 002997 795 LMGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQ--GMNDCPSC 844 (859)
Q Consensus 795 ~~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~--~~~~CP~C 844 (859)
..+.+.....|+||++.+.++++++|||. ||..|+..|+.. ....||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 34566778899999999999999999999 999999998653 45789998
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=5.3e-09 Score=90.82 Aligned_cols=54 Identities=33% Similarity=0.731 Sum_probs=46.6
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhc-----CCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQ-----GMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~-----~~~~CP~CR~~i~~ 850 (859)
.+.+.....|+||++.+.++++++|||. ||..|+..|+.. ....||.||.++..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3556778899999999999999999999 999999988764 25789999999864
No 26
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.73 E-value=4.4e-09 Score=92.07 Aligned_cols=57 Identities=26% Similarity=0.646 Sum_probs=46.2
Q ss_pred ccCCCccccccccccC--cCcEEeC--CCchhhhHHhHHHHhhcCCCCCCCccccccCceEE
Q 002997 797 GGLKRERECVVCLAEE--KSVVFLP--CAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQV 854 (859)
Q Consensus 797 e~l~~~~~C~ICle~~--~~~Vllp--CgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i 854 (859)
+.++++..|+||++.+ .+++++| |||. ||..|+..++......||.||.+|.....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 3456778999999986 4567776 9999 999999988865667899999999765443
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.71 E-value=4.3e-09 Score=86.80 Aligned_cols=54 Identities=26% Similarity=0.630 Sum_probs=44.6
Q ss_pred CccccccccccCcCc-------EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC--ceEEEe
Q 002997 801 RERECVVCLAEEKSV-------VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ--RIQVRF 856 (859)
Q Consensus 801 ~~~~C~ICle~~~~~-------VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~--~i~i~~ 856 (859)
+...|+||++.+.++ ++++|||. ||..|+..|... ...||.||.++.. .+++|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence 356899999987765 89999999 999999998875 4799999999974 455553
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=7e-09 Score=86.60 Aligned_cols=48 Identities=27% Similarity=0.811 Sum_probs=40.5
Q ss_pred ccccccccc-cCcCc----EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 802 ERECVVCLA-EEKSV----VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 802 ~~~C~ICle-~~~~~----VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
+..|+||++ .+.++ ++++|||. ||..|+..++......||.||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 467999999 66665 67899999 99999999876566789999999864
No 29
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.71 E-value=3.9e-09 Score=89.13 Aligned_cols=54 Identities=26% Similarity=0.641 Sum_probs=44.9
Q ss_pred CCccccccccccCcCc-------EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC--ceEEE
Q 002997 800 KRERECVVCLAEEKSV-------VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ--RIQVR 855 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~-------VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~--~i~i~ 855 (859)
.....|+||++.+.++ ++++|||. ||..|+..|.... ..||+||.++.. ..++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 4567899999998776 89999999 9999999988754 699999999864 34554
No 30
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.70 E-value=3.5e-09 Score=103.60 Aligned_cols=54 Identities=28% Similarity=0.567 Sum_probs=47.3
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
+.+.....|+||++.+.++++++|||. ||..|+..|+......||+||.+|...
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred HhCccCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 445667899999999999999999999 999999999876556899999998754
No 31
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.69 E-value=1.3e-08 Score=85.83 Aligned_cols=54 Identities=30% Similarity=0.636 Sum_probs=44.0
Q ss_pred ccCCCccccccccccC---cCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCce
Q 002997 797 GGLKRERECVVCLAEE---KSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRI 852 (859)
Q Consensus 797 e~l~~~~~C~ICle~~---~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i 852 (859)
+.......|+||++.+ ..++.++|||. ||..|+..|.... ..||+||.+|...+
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITN-KKCPICRVDIEAQL 65 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHC-SBCTTTCSBSCSCC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcC-CCCcCcCccccCcC
Confidence 3445667899998875 45788999999 9999999988754 67999999987654
No 32
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.69 E-value=1.7e-09 Score=119.20 Aligned_cols=56 Identities=41% Similarity=0.950 Sum_probs=49.7
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEe
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRF 856 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~ 856 (859)
.+.++....|+||++.+.+++++||||.+||..|+.. ...||+||.+|..++++|+
T Consensus 289 ~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~-----~~~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 289 LRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPS-----LRKCPICRGIIKGTVRTFL 344 (345)
T ss_dssp HHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGG-----CSBCTTTCCBCCEEEECC-
T ss_pred HHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhc-----CCcCCCCCCCccCeEEeec
Confidence 4556777899999999999999999999999999984 3789999999999999985
No 33
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.69 E-value=1.6e-08 Score=92.47 Aligned_cols=53 Identities=13% Similarity=-0.019 Sum_probs=47.4
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
...+.....|+||++.+.++|+++|||. ||..||..|+. ....||.||.++..
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~-~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLL-NSPTDPFNRQTLTE 75 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTT-SCSBCSSSCCBCCT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHH-cCCCCCCCCCCCCh
Confidence 3456788999999999999999999999 99999999997 45789999999864
No 34
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.1e-08 Score=87.45 Aligned_cols=57 Identities=30% Similarity=0.577 Sum_probs=45.6
Q ss_pred cccCCCccccccccccCcC---cEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEE
Q 002997 796 MGGLKRERECVVCLAEEKS---VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQV 854 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~---~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i 854 (859)
+..+.....|+||++.+.. ++.++|+|. ||..|+..|.... ..||+||.+|.....+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVR-KVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHC-SBCTTTCCBCSSCCSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcC-CcCCCcCccccccccc
Confidence 4455667899999998654 455699999 9999999998754 5899999999776554
No 35
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.67 E-value=1.2e-08 Score=90.54 Aligned_cols=53 Identities=13% Similarity=-0.031 Sum_probs=47.4
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
...+.....|+||++.+.++|+++|||. ||..||..|+.. ...||.||.++..
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hhcCchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 3456788999999999999999999999 999999999974 4789999999864
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.66 E-value=3.6e-09 Score=98.17 Aligned_cols=52 Identities=29% Similarity=0.620 Sum_probs=45.3
Q ss_pred cCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 798 GLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
.......|+||++.+.+++.++|||. ||..|+..|+..+...||.||.+|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34567899999999999999999999 99999998876556789999998853
No 37
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.66 E-value=8.9e-09 Score=86.37 Aligned_cols=53 Identities=26% Similarity=0.735 Sum_probs=44.7
Q ss_pred CccccccccccCcCc-EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEE
Q 002997 801 RERECVVCLAEEKSV-VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVR 855 (859)
Q Consensus 801 ~~~~C~ICle~~~~~-VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~ 855 (859)
....|+||++.+.++ ++++|||. ||..|+..|.... ..||.||.++...+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQN-PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHS-CSTTTTCCCCCCEECCC
T ss_pred CCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCc-CcCcCCChhhHhhhhcc
Confidence 456899999999884 88999999 9999999988644 79999999998765543
No 38
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.65 E-value=4.6e-08 Score=98.46 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=46.1
Q ss_pred cCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 798 GLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
.+.....|+||++.+.+||++||||. ||..||..|+......||.||.++...
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 34677899999999999999999999 999999999875444799999998653
No 39
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.65 E-value=1.9e-08 Score=91.69 Aligned_cols=54 Identities=17% Similarity=0.029 Sum_probs=47.6
Q ss_pred cccCCCccccccccccCcCcEEeCCC-chhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCA-HQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCg-H~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
...+.....|+||++.+.++|+++|| |. ||..||..|+.. ...||+||.++...
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~-~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLS-DQTDPFNRSPLTMD 70 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTT-SCBCTTTCSBCCTT
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHh-CCCCCCCCCCCChh
Confidence 34567889999999999999999999 99 999999999974 57899999998643
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.65 E-value=7e-09 Score=93.70 Aligned_cols=53 Identities=19% Similarity=0.555 Sum_probs=45.9
Q ss_pred cccCCCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
.+.+.....|+||++.+.+++.+ +|||. ||..|+..|... ...||.||.++..
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 44556778999999999999988 99999 999999998874 4789999999864
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.63 E-value=1.1e-08 Score=94.04 Aligned_cols=53 Identities=21% Similarity=0.510 Sum_probs=47.0
Q ss_pred cccCCCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
++.+.....|+||++.+.+++.+ +|||. ||..|+..|+... ..||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETS-KYCPICDVQVHK 62 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSC-SBCTTTCCBSCS
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhC-CcCcCCCccccc
Confidence 45667888999999999999998 99999 9999999998744 789999999875
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.63 E-value=1.8e-08 Score=86.81 Aligned_cols=53 Identities=28% Similarity=0.572 Sum_probs=43.0
Q ss_pred ccCCCccccccccccCcC---cEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 797 GGLKRERECVVCLAEEKS---VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~---~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
+.......|+||++.+.. ++.++|+|. ||..|+..|.... ..||+||.+|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQH-DSCPVCRKSLTGQ 65 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTT-CSCTTTCCCCCCS
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcC-CcCcCcCCccCCc
Confidence 445677899999887653 466799999 9999999998644 7899999998654
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.62 E-value=1.2e-08 Score=100.59 Aligned_cols=53 Identities=28% Similarity=0.688 Sum_probs=45.8
Q ss_pred ccCCCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 797 GGLKRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
+.+.....|+||++.+.+++.+ +|||. ||..|+..|+..+...||.||.++..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3456677999999999999988 99999 99999999988656789999999854
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.62 E-value=1.5e-08 Score=81.33 Aligned_cols=47 Identities=34% Similarity=0.783 Sum_probs=40.9
Q ss_pred CccccccccccCcC----cEEeCCCchhhhHHhHHHHhhcCCCCCCCcccccc
Q 002997 801 RERECVVCLAEEKS----VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 801 ~~~~C~ICle~~~~----~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~ 849 (859)
....|+||++.+.+ +++++|||. ||..|+..|.... ..||+||.+|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 34679999998755 889999999 9999999998755 79999999875
No 45
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.62 E-value=2e-08 Score=89.77 Aligned_cols=51 Identities=25% Similarity=0.596 Sum_probs=43.2
Q ss_pred CCCccccccccccCcC---cEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 799 LKRERECVVCLAEEKS---VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 799 l~~~~~C~ICle~~~~---~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
......|+||++.+.. ++.+||||. ||..|+..|... ...||+||.+|...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQK-SGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTT-TCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHc-CCcCcCcCccCCCC
Confidence 4566789999998776 888999999 999999999864 46899999988653
No 46
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.61 E-value=1.4e-08 Score=113.10 Aligned_cols=56 Identities=25% Similarity=0.615 Sum_probs=48.5
Q ss_pred CCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEEEe
Q 002997 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQVRF 856 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i~~ 856 (859)
.....|+||++.+.+++++||||. ||..|+..|.......||+||.+|.....+++
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 444799999999999999999999 99999998876456799999999988766654
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.61 E-value=1.7e-08 Score=94.34 Aligned_cols=54 Identities=24% Similarity=0.555 Sum_probs=47.6
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
++.+.....|+||++.+.+++.++|||. ||..|+..|.......||+||.++..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4566778899999999999999999999 99999999887555599999999865
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=9.2e-09 Score=94.43 Aligned_cols=53 Identities=28% Similarity=0.599 Sum_probs=45.0
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcC--CCCCCCccccccC
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQG--MNDCPSCRSPIQQ 850 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~--~~~CP~CR~~i~~ 850 (859)
+.+.....|+||++.+.+++.++|||. ||..|+..|.... ...||.||.++..
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred HhccCCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 344567799999999999999999999 9999999988743 2589999999864
No 49
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.56 E-value=2.6e-08 Score=80.03 Aligned_cols=48 Identities=35% Similarity=0.795 Sum_probs=40.6
Q ss_pred CCccccccccccCcC---cEEeC-CCchhhhHHhHHHHhhcCCCCCCCcccccc
Q 002997 800 KRERECVVCLAEEKS---VVFLP-CAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 800 ~~~~~C~ICle~~~~---~Vllp-CgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~ 849 (859)
++...|+||++.+.+ ++.++ |||. ||..|+..|... ...||+||.+|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 456789999999776 77787 9999 999999988864 478999999873
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.56 E-value=1.7e-08 Score=93.79 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=46.6
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
+.+.....|+||++.+.+++.++|||. ||..|+..|+......||.||.+|..
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 345667899999999999999999999 99999999987655789999999864
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.53 E-value=1.8e-08 Score=97.51 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=46.1
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccc
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPI 848 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i 848 (859)
+.++....|+||++.+.++|.++|||. ||..|+..|+......||.||.++
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 567888999999999999999999999 999999999876656899999975
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=3.1e-08 Score=104.20 Aligned_cols=51 Identities=18% Similarity=0.095 Sum_probs=45.1
Q ss_pred CCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 799 LKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 799 l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
......|+||++.+.+||++||||. ||..||..|+..+...||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3566789999999999999999999 99999999987655569999999864
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=4e-08 Score=84.23 Aligned_cols=49 Identities=33% Similarity=0.719 Sum_probs=41.2
Q ss_pred CCccccccccccCcCc---EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 800 KRERECVVCLAEEKSV---VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~---VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
.....|+||++.+... +.+||+|. ||..|+..|.... ..||+||.+|..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 4567899999886654 78899999 9999999988754 689999998854
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=1.6e-08 Score=82.53 Aligned_cols=46 Identities=37% Similarity=0.747 Sum_probs=39.8
Q ss_pred CCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 800 KRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
.+...|+||++.+.++++++|||. ||..|+.. ....||+||.++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEA----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSS----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCc-ccHHHHcc----CCCCCCcCCcEeec
Confidence 355789999999999999999999 99999875 34689999998864
No 55
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.46 E-value=6.6e-08 Score=89.31 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=39.5
Q ss_pred ccccccccccCcCcE------------------EeCCCchhhhHHhHHHHhh----cCCCCCCCccccccCc
Q 002997 802 ERECVVCLAEEKSVV------------------FLPCAHQVLCQKCNELHEK----QGMNDCPSCRSPIQQR 851 (859)
Q Consensus 802 ~~~C~ICle~~~~~V------------------llpCgH~vfC~~Ci~~~~~----~~~~~CP~CR~~i~~~ 851 (859)
+..|+||++.+..++ +++|+|. ||..|+..|.. .....||+||+.|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 458999999875533 7899999 99999999984 2346899999988643
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=1.7e-08 Score=94.17 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=44.4
Q ss_pred cccCCCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCcccccc
Q 002997 796 MGGLKRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~ 849 (859)
++.+.....|+||++.+.+++++ +|||. ||..|+..|+. ..||.||.++.
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT---TBCSSSCCBCS
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc---CCCcCCCCcCc
Confidence 45567788999999999999999 99999 99999998775 68999999985
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.34 E-value=1.9e-07 Score=92.43 Aligned_cols=54 Identities=24% Similarity=0.555 Sum_probs=47.7
Q ss_pred cccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 796 MGGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 796 ~e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
++.+.....|+||++.+.+++.++|||. ||..|+..|+......||.||.++..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4566788999999999999999999999 99999999887555699999999865
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=2.6e-07 Score=83.16 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=41.0
Q ss_pred CCccccccccccCcCcEEeC-CCchhhhHHhHHHHhhcC-----CCCCCC--cccc
Q 002997 800 KRERECVVCLAEEKSVVFLP-CAHQVLCQKCNELHEKQG-----MNDCPS--CRSP 847 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~Vllp-CgH~vfC~~Ci~~~~~~~-----~~~CP~--CR~~ 847 (859)
.....|+||++.+.++|.++ |||. ||..||..|+... ...||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46688999999999999996 9999 9999999998643 358999 9866
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.31 E-value=2.1e-07 Score=87.10 Aligned_cols=50 Identities=28% Similarity=0.721 Sum_probs=43.3
Q ss_pred CCccccccccccCcCc-------EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 800 KRERECVVCLAEEKSV-------VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~-------VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
.+...|+||++.+.++ +.++|||. ||..|+..|+.. ...||.||.++...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTT-CSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHh-CCCCCCCCCcCccc
Confidence 3567899999998887 99999999 999999999874 36999999999754
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.26 E-value=0.00038 Score=73.51 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=6.4
Q ss_pred ccccccccc
Q 002997 803 RECVVCLAE 811 (859)
Q Consensus 803 ~~C~ICle~ 811 (859)
..|..|+-.
T Consensus 199 ~~C~GC~~~ 207 (256)
T 3na7_A 199 QACGGCFIR 207 (256)
T ss_dssp TBCTTTCCB
T ss_pred CccCCCCee
Confidence 578888765
No 61
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.22 E-value=2.2e-06 Score=108.25 Aligned_cols=30 Identities=13% Similarity=0.410 Sum_probs=17.2
Q ss_pred HHHHHHhhhhCCCChH------HHHHHhhhcc-cccC
Q 002997 106 FRNVIKQISECGYSED------DATKNIARHS-IYCG 135 (859)
Q Consensus 106 y~~Ai~~l~~~g~~~~------~~~~all~ag-~cyG 135 (859)
|......|-..||+.+ .++.|||+-| ..|.
T Consensus 331 f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~ 367 (1184)
T 1i84_S 331 FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFK 367 (1184)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceee
Confidence 4444444555677754 3567788877 4343
No 62
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=7.1e-07 Score=78.08 Aligned_cols=46 Identities=30% Similarity=0.639 Sum_probs=36.0
Q ss_pred ccccccccccCcC--------------cEEe-CCCchhhhHHhHHHHhhcCCCCCCCcccccc
Q 002997 802 ERECVVCLAEEKS--------------VVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 802 ~~~C~ICle~~~~--------------~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~ 849 (859)
...|.||++.+.+ ++.+ +|+|. ||..|+..|.... ..||+||+++.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~-~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQN-NRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTC-CBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhC-CCCCCcCCCcc
Confidence 4558888877654 4444 59999 9999999998754 69999999874
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.20 E-value=6.7e-07 Score=94.53 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=46.4
Q ss_pred ccccCCCccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcC-CCCCCC--ccccccC
Q 002997 795 LMGGLKRERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQG-MNDCPS--CRSPIQQ 850 (859)
Q Consensus 795 ~~e~l~~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~-~~~CP~--CR~~i~~ 850 (859)
.+........|+||++.+.+||.. .|||. ||..||..++... ...||+ |+.++..
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eecCCceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 344567888999999999999985 99999 9999999998743 357999 9998754
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.19 E-value=5.8e-07 Score=84.14 Aligned_cols=55 Identities=25% Similarity=0.635 Sum_probs=45.5
Q ss_pred CCccccccccccCcCc-------EEeCCCchhhhHHhHHHHhhcCCCCCCCccccccC--ceEEEe
Q 002997 800 KRERECVVCLAEEKSV-------VFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ--RIQVRF 856 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~-------VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~--~i~i~~ 856 (859)
.....|+||++.+.++ +.++|||. ||..|+..|.... ..||.||.+|.. .+++|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcC-CCCCCCCCcCChhcceeeeC
Confidence 4567899999987775 89999999 9999999998754 799999999864 356653
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.01 E-value=3.3e-06 Score=78.03 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=38.4
Q ss_pred CccccccccccCcC------------------cEEeCCCchhhhHHhHHHHhhcCCCCCCCcccccc
Q 002997 801 RERECVVCLAEEKS------------------VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 801 ~~~~C~ICle~~~~------------------~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~ 849 (859)
....|.||++.+.. +++++|+|. |+..|+..|... ...||+||++|.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHc-CCcCcCCCCcce
Confidence 34579999887654 466899999 999999999874 478999999863
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.79 E-value=7.2e-06 Score=73.38 Aligned_cols=46 Identities=24% Similarity=0.570 Sum_probs=36.5
Q ss_pred CccccccccccCcCcEEe---CCCchhhhHHhHHHHhhc----C---CCCCCC--cccc
Q 002997 801 RERECVVCLAEEKSVVFL---PCAHQVLCQKCNELHEKQ----G---MNDCPS--CRSP 847 (859)
Q Consensus 801 ~~~~C~ICle~~~~~Vll---pCgH~vfC~~Ci~~~~~~----~---~~~CP~--CR~~ 847 (859)
....|+||++.+..++++ +|||. ||..|+..++.. + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356899999987765443 79999 999999988752 2 247999 9988
No 67
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.75 E-value=0.007 Score=63.80 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002997 549 ELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKS 623 (859)
Q Consensus 549 eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es 623 (859)
+|+.+-.++..++....... ..+..++..+..+..++..++..+..++.++..++.+++..+.+....
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp-------~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKR-------KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555554433322 234444444444444444444444444444444444444433333333
No 68
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.70 E-value=0.0069 Score=82.57 Aligned_cols=163 Identities=12% Similarity=0.126 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----
Q 002997 574 TVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSA----VSCQEAFEREQKALKNAQSL----- 644 (859)
Q Consensus 574 t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~----k~lqeI~ekErk~lerLka~----- 644 (859)
+...+.+|...|....-+|+.++.+..++-.++...+.+.|+.|....+.+ ++-.++..+..++.+.|..+
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~P 2011 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGP 2011 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 445666677777777666666666655554444444444333332222222 22233444444444444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 645 -EAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAE 723 (859)
Q Consensus 645 -EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE 723 (859)
+.+++.++++++..+++|.+++++|.+.+..++.+++++.+..++++.+..+++..+....+++. +-....
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~--------Li~gL~ 2083 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA--------LLDNLN 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh
Confidence 35566667777777777777777777777777777777777777777777776655555554443 222333
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q 002997 724 KEMSKLTEDIGKLESQLSLLK 744 (859)
Q Consensus 724 ~elqrlkdeIkrLEeELeqLr 744 (859)
.|..|..+.+..++.++..|-
T Consensus 2084 ~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2084 SERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHhcc
Confidence 344455555555555555543
No 69
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.70 E-value=5.5e-06 Score=77.93 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=0.4
Q ss_pred ccccccccccCcC------------------cEEeCCCchhhhHHhHHHHhhcCCCCCCCcccccc
Q 002997 802 ERECVVCLAEEKS------------------VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 802 ~~~C~ICle~~~~------------------~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~ 849 (859)
...|.||++.+.+ ++.++|+|. ||..|+..|... ...||+||++|.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHc-CCcCCCCCCeee
Confidence 3579999988654 234699999 999999998874 478999999863
No 70
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=3.6e-05 Score=67.55 Aligned_cols=53 Identities=23% Similarity=0.486 Sum_probs=41.8
Q ss_pred CCccccccccccC--cCcEEeCCC-----chhhhHHhHHHHhhcC-CCCCCCccccccCceE
Q 002997 800 KRERECVVCLAEE--KSVVFLPCA-----HQVLCQKCNELHEKQG-MNDCPSCRSPIQQRIQ 853 (859)
Q Consensus 800 ~~~~~C~ICle~~--~~~VllpCg-----H~vfC~~Ci~~~~~~~-~~~CP~CR~~i~~~i~ 853 (859)
.....|.||++.+ .+.+++||. |. |...|+..|.... ...||+||.+|.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 3456899999864 456789996 99 9999999998754 3589999999865443
No 71
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.57 E-value=0.02 Score=57.87 Aligned_cols=134 Identities=15% Similarity=0.153 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEIS 670 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELE 670 (859)
+|++++..++.|...+..++.+++..+.++..+... ....+..+++++..++......+..|..+.+.-+
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e----------~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND 119 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ----------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555555555556666655555444332 2223455566666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 671 KAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 671 eaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
...+........+.........++....-...+... +.......+|++++++.|..++..+.++
T Consensus 120 dlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E------------Ke~l~~~~QRLkdE~rDLk~El~v~~~~ 183 (189)
T 2v71_A 120 DLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE------------KESLLVSVQRLKDEARDLRQELAVRERQ 183 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHCCC--------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666665555555554444444444333222222111 2233446788888888888888777665
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.43 E-value=5.6e-05 Score=62.92 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=43.5
Q ss_pred ccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcCCCCCCCccccccCc--eEEE
Q 002997 802 ERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR--IQVR 855 (859)
Q Consensus 802 ~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~--i~i~ 855 (859)
...|+||++.+.++|++ +|||. ||+.||..|.... ..||+++.++... +.+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 35799999999999999 99999 9999999998744 5699999998543 4443
No 73
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.42 E-value=0.0051 Score=76.98 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVAVLQQEISKA 672 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~~lqqELEea 672 (859)
.++..|+++++.+++++.++.++.+.+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333333
No 74
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.28 E-value=0.00016 Score=65.75 Aligned_cols=49 Identities=39% Similarity=0.779 Sum_probs=39.0
Q ss_pred ccccccccCcC-cEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceE
Q 002997 804 ECVVCLAEEKS-VVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQ 853 (859)
Q Consensus 804 ~C~ICle~~~~-~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~ 853 (859)
-|.+|.-.... .-++||.|. ||..|+..+..++...||.|+.+|..+-.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 47788766433 457899998 99999999887777899999999876543
No 75
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.97 E-value=0.16 Score=69.76 Aligned_cols=9 Identities=11% Similarity=-0.293 Sum_probs=4.4
Q ss_pred Ccccccccc
Q 002997 485 LPEYYAGIP 493 (859)
Q Consensus 485 ~~ky~~~i~ 493 (859)
..-|.||+.
T Consensus 1764 ~~l~~~Fi~ 1772 (3245)
T 3vkg_A 1764 EELYKYFTS 1772 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555554
No 76
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.96 E-value=0.17 Score=50.05 Aligned_cols=74 Identities=8% Similarity=-0.037 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREE 654 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeE 654 (859)
++..+..+..+++.=..........+.+++..+.............+..+...-+.+.+++..+|++.+.++=+
T Consensus 67 Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid 140 (168)
T 3o0z_A 67 TDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEID 140 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33333444444433333333333333333333333333334444455556666777777788888877776644
No 77
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.93 E-value=0.032 Score=69.91 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKA 672 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEea 672 (859)
+++.++++++.+++++....++...+++..++.
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333
No 78
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.87 E-value=0.39 Score=47.08 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREER 687 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeek 687 (859)
+-...+.++..|...+.....+.....+.+..+...+..++..+...+
T Consensus 71 rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433333
No 79
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.83 E-value=0.28 Score=49.53 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=8.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q 002997 718 IKLEAEKEMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 718 ~r~eaE~elqrlkdeIkrLEeELeqLr~k~ 747 (859)
+..+.+. ...++..++||..++..|+...
T Consensus 149 LE~El~E-Ke~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 149 LESELDE-KESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHH-HHHHHCCC--------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445543 5667777788888888877663
No 80
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.45 E-value=0.77 Score=45.00 Aligned_cols=74 Identities=27% Similarity=0.316 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 592 VERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISK 671 (859)
Q Consensus 592 lera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEe 671 (859)
-+.+......++.+|..+...+..|..++..+.++ +..+++.+..++.+|...+.+...+.++|++
T Consensus 65 eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERs--------------v~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS--------------VTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555444 5555666666666666666666666666665
Q ss_pred HHHHHHHH
Q 002997 672 AENRHNQL 679 (859)
Q Consensus 672 aK~~veql 679 (859)
.-..+..+
T Consensus 131 tl~el~~~ 138 (155)
T 2efr_A 131 LEDKVEEL 138 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555443
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.34 E-value=0.029 Score=65.03 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcC
Q 002997 727 SKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 727 qrlkdeIkrLEeELeqLr~k~ 747 (859)
+++++++..+.+++.+|..+.
T Consensus 561 ~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334445556666666666653
No 82
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.32 E-value=0.97 Score=44.75 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002997 553 LRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAAN 617 (859)
Q Consensus 553 LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAK 617 (859)
||.+-+...+++|-..++ .+.+...+..+..+...+.........|+.+...+++.++..+
T Consensus 22 Lk~EsE~~~rlkK~~tEl----~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 22 LRTESDTAVRLRKSHTEM----SKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554333222 2234444445555555555555556666666666666666533
No 83
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=96.24 E-value=0.4 Score=45.32 Aligned_cols=130 Identities=25% Similarity=0.319 Sum_probs=76.5
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEW----------ANQKVMQAARRLSKDQAELKALRHEKQEVEQ-CQKDKQILEEN 573 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~w----------a~~k~~qaA~rL~ke~~eLk~LR~ekeelq~-lkkekq~lee~ 573 (859)
+.|+-+|.+|...+..|++++++-.+- -+.||=|.-+|=.--..++-.||.+...+++ +.+....+..+
T Consensus 7 E~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 7 EDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 567788999999999999999884331 2445555544444444455567777666665 22222222222
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 574 ---------TVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNA 641 (859)
Q Consensus 574 ---------t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerL 641 (859)
.+++|.+++.-|...+. .|..|..-+..++.++|..+++..+...++..+.-.--.+.+++
T Consensus 87 ~~qQnQQSlDiRKLrELEADLKEKDs-------MVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 87 SQQQNQQSLDMRKLGELEADLKEKDS-------MVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKI 156 (167)
T ss_dssp HHHHHHHHHHHHHTHHHHHTHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHhhhhHHHHHHHHhHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 22345555555544444 45555556666678888888877777777655544433333333
No 84
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.96 E-value=1.4 Score=43.19 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
+..+..++..|+.++..++..-.....+......+++.+
T Consensus 53 ~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 53 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665555444444444444444444
No 85
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.53 E-value=1.7 Score=41.14 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEM 613 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEm 613 (859)
.+..++..|.++...+.+.......|+..+..+..++
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek 50 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEK 50 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433333
No 86
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.10 E-value=0.013 Score=48.50 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=37.5
Q ss_pred CccccccccccCcCcEEeCCCc-----hhhhHHhHHHHhhc-CCCCCCCccccccC
Q 002997 801 RERECVVCLAEEKSVVFLPCAH-----QVLCQKCNELHEKQ-GMNDCPSCRSPIQQ 850 (859)
Q Consensus 801 ~~~~C~ICle~~~~~VllpCgH-----~vfC~~Ci~~~~~~-~~~~CP~CR~~i~~ 850 (859)
....|.||++...+..++||.+ . |=..|+..|... +...||+|+.+|..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~-~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhh-hHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4568999998866667789753 3 556899999863 45789999998853
No 87
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.88 E-value=0.0042 Score=68.01 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=38.8
Q ss_pred CCccccccccccCcC-c-------EEeCCCchhhhHHhHHHHhhcC----------CCCCCCccccccCce
Q 002997 800 KRERECVVCLAEEKS-V-------VFLPCAHQVLCQKCNELHEKQG----------MNDCPSCRSPIQQRI 852 (859)
Q Consensus 800 ~~~~~C~ICle~~~~-~-------VllpCgH~vfC~~Ci~~~~~~~----------~~~CP~CR~~i~~~i 852 (859)
.....|.||++...+ . ...+|+|. |-..|+..|.... ...||.||.+|...+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 456789999997655 1 12479999 9999999987531 146999999986543
No 88
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.56 E-value=0.033 Score=48.09 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=39.9
Q ss_pred CCccccccccccCcCcEE-eCCCchhhhHHhHHHHhhcC-CCCCCCccccccCce
Q 002997 800 KRERECVVCLAEEKSVVF-LPCAHQVLCQKCNELHEKQG-MNDCPSCRSPIQQRI 852 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~Vl-lpCgH~vfC~~Ci~~~~~~~-~~~CP~CR~~i~~~i 852 (859)
.....|.||++....-.. ..|+|. |=..|+..|+..+ ...||+||.++...+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 344689999998664433 279999 9999999998754 268999999886543
No 89
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.50 E-value=3.3 Score=39.10 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRW 683 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~ 683 (859)
...+..++..|+..|..++..+......++.+...-.+++.++
T Consensus 43 ~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l 85 (129)
T 2fxo_A 43 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666665555554444444444444444333
No 90
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.48 E-value=1.8 Score=39.33 Aligned_cols=39 Identities=8% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
++..+.....+.++|....+++..+..+++.++..+...
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555555554444443
No 91
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.46 E-value=10 Score=44.57 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 002997 650 LLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAA-IRNQREQLEAAAKA-EEEMIKLEAEKEMS 727 (859)
Q Consensus 650 ~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~-ekkE~e~~ee~~k~-e~e~~r~eaE~elq 727 (859)
..+.+|+.++.+-..++++.+.++....+.+..+++.++..++-+.|+.+ ...+++.......+ -...++.+.+.-.+
T Consensus 484 ~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~ 563 (592)
T 1f5n_A 484 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 563 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666543 22222222221111 12223333333445
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 002997 728 KLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 728 rlkdeIkrLEeELeqLr~k 746 (859)
..+.++..++++|..|++.
T Consensus 564 g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 564 GFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5677788888888888876
No 92
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.26 E-value=1.8 Score=39.24 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
++..+.....+.++|...++++..++.+++.+...+..+
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555566666666666666665555554443
No 93
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.97 E-value=0.38 Score=46.79 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl 618 (859)
++..++.+|..+....+-+.-......-.+..+..+++.+..
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraee 94 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 94 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333333333333333333333333
No 94
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=93.53 E-value=0.095 Score=61.41 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 576 KRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEA 630 (859)
Q Consensus 576 KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI 630 (859)
.+|..+++....+...+.++...+..|+.+....+.+.+....+..+.....+++
T Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l 396 (575)
T 2i1j_A 342 DRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRL 396 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666655555555554444444444443333
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.17 E-value=1.8 Score=49.02 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 647 QRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENL 693 (859)
Q Consensus 647 Q~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeL 693 (859)
.....++++...+++-++++.++++....++.+.++++....+...+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence 33444555555555555555666666666655555555544444433
No 96
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.88 E-value=4.7 Score=36.55 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=4.7
Q ss_pred HHhHHHHHHHHH
Q 002997 725 EMSKLTEDIGKL 736 (859)
Q Consensus 725 elqrlkdeIkrL 736 (859)
++..+...|+-+
T Consensus 87 ev~~L~Rriqll 98 (101)
T 3u1c_A 87 EVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333334433
No 97
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.86 E-value=1.7 Score=40.02 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 637 ALKNAQSLEAQRVLLREELATEKQKVAVLQQEI 669 (859)
Q Consensus 637 ~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqEL 669 (859)
+..++...|+.+...+.++...++++.+++..+
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666665544433
No 98
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.86 E-value=15 Score=43.19 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=11.2
Q ss_pred CchHHHHHhhcccHHHHHHHHhH
Q 002997 505 NGKDELILKLVPWVPELQNELNS 527 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e 527 (859)
|.......+|..++.....++..
T Consensus 375 d~~~~~~~~L~~~i~~~~~~~~~ 397 (592)
T 1f5n_A 375 DVDHLFQKELAAQLEKKRDDFCK 397 (592)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555444444
No 99
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.59 E-value=1.2 Score=50.83 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=66.4
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLS-EMEF 583 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLs-emE~ 583 (859)
+-.++.=.++..+|.+|+++|++ .++..++.... .+..++.++...+...+.+ ++..+++ +|+.
T Consensus 53 glLdkqErDltkrINELKnqLEd------------lsKnsKdseqy--~k~~~E~Lr~rq~q~~dNd-NtynE~S~ELRR 117 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFE------------YQKNNKDSHSL--TTNIMEILRGDFSSANNRD-NTYNRVSEDLRS 117 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH------------HHHHHHHHHHH--HHHHHHTTSSHHHHHHHHH-HHHHHTTHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHH------------HHhhchhHHHH--HHHHHHHHHHHHHhhhccc-hhHHHHHHHHHH
Confidence 44456667778888888888888 44444444333 3444444444333333222 2334454 7777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002997 584 ALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSC 627 (859)
Q Consensus 584 aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~l 627 (859)
.|..+...|+..-..|+.|+.-++.++.+|.+.+...+-..+.|
T Consensus 118 rIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 118 RIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777776667777777777777777777766666666666
No 100
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.54 E-value=11 Score=36.83 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 580 EMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 580 emE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
..+..+.++..++..-.......|.+...+..|+|.
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEe 90 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 90 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444
No 101
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.49 E-value=7 Score=36.42 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 645 EAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEK 724 (859)
Q Consensus 645 EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~ 724 (859)
+..+..|+..|......-.++.-+++.++..++.+..+++.+......+...+...++... .+-+.+.+.|.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD--------~~~l~r~dLE~ 90 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD--------NASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc--------HHHHHHHHHHH
Confidence 5666677777766666667777777777777777777777776666655555443333322 22334556666
Q ss_pred HHhHHHHHHHHHH----HHHHHHh
Q 002997 725 EMSKLTEDIGKLE----SQLSLLK 744 (859)
Q Consensus 725 elqrlkdeIkrLE----eELeqLr 744 (859)
.++.++++|.-+. +++..|+
T Consensus 91 ~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 91 KVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666665543 3455544
No 102
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.19 E-value=8.3 Score=34.80 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=4.1
Q ss_pred HHhHHHHHHHH
Q 002997 725 EMSKLTEDIGK 735 (859)
Q Consensus 725 elqrlkdeIkr 735 (859)
++..+...|+-
T Consensus 87 evasLnRriql 97 (101)
T 3u59_A 87 EVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333433
No 103
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.41 E-value=3.9 Score=38.66 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
++..++..+..+|.++..++.+|+.
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777765
No 104
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=90.37 E-value=0.3 Score=57.25 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002997 574 TVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAV 625 (859)
Q Consensus 574 t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k 625 (859)
..+...+|+..|.....+..+++.++.+-+.....+..+...++..+....+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~ 384 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQ 384 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777777777777666666666665555555444443333
No 105
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.33 E-value=11 Score=34.86 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=44.6
Q ss_pred HHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHH
Q 002997 509 ELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQ----CQKDKQILEENTVK---RLSEM 581 (859)
Q Consensus 509 e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~----lkkekq~lee~t~K---rLsem 581 (859)
....+|..++..|..+++.|++=..+---.+.........++..||...+.+.. +...+..++...+. .|.++
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 356788999999999999999865554433333333444444455555554444 33333333333322 44444
Q ss_pred HHHHHHH
Q 002997 582 EFALTNA 588 (859)
Q Consensus 582 E~aL~ka 588 (859)
+.++..+
T Consensus 83 E~k~n~a 89 (111)
T 2v66_B 83 EQRLNQA 89 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 106
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=90.30 E-value=5.2 Score=44.90 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVAVLQQEISKAENRHNQLE 680 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE 680 (859)
.--..||++|.+.++.+.+++.+....+..+-.+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM 431 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH
Confidence 33445566666666666555555555555554443
No 107
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.17 E-value=4.8 Score=37.10 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 639 KNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 639 erLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
+++.-++.|+..++.....++..-.++..+.+++..++..+
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 44666777777777777777766666666655555555444
No 108
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.00 E-value=5.9 Score=37.26 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
++..++..+..+|.++..++.+|+.
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556666677777777777777765
No 109
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.45 E-value=0.12 Score=46.16 Aligned_cols=31 Identities=19% Similarity=0.561 Sum_probs=26.5
Q ss_pred cccccccccc-CcCcEE--eCCCchhhhHHhHHHH
Q 002997 802 ERECVVCLAE-EKSVVF--LPCAHQVLCQKCNELH 833 (859)
Q Consensus 802 ~~~C~ICle~-~~~~Vl--lpCgH~vfC~~Ci~~~ 833 (859)
+..|.||.+. +..++. +.|+|. ||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHH
Confidence 4689999975 677777 899999 999999973
No 110
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.04 E-value=3.2 Score=36.05 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
++..+.......++|....+++..++.+++.+...+.....+
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555555555555554444333
No 111
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.99 E-value=5.8 Score=45.39 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 643 SLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 643 a~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
.+++++.-|+++|......|+.||..|++...+++.||.-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666655555444
No 112
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.86 E-value=12 Score=35.83 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWR 684 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~q 684 (859)
.+..++.++..+..++...+.++..++.++++++++++.+..++.
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555544444333
No 113
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=88.75 E-value=10 Score=43.23 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=7.1
Q ss_pred HHhHHHHHHHHHHHHH
Q 002997 603 EMEHSVLKKEMEAANL 618 (859)
Q Consensus 603 E~E~a~lraEmEaAKl 618 (859)
.++++++++|.|+++.
T Consensus 40 ~a~n~~i~aeNeaikk 55 (497)
T 3iox_A 40 NAANAALTAENTAIKK 55 (497)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3344444444444443
No 114
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=88.74 E-value=0.28 Score=39.15 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhhcCCccccccc
Q 002997 178 EMINVLRDVKTSLSIAEAMWWLLMCDLNISQACTV 212 (859)
Q Consensus 178 glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~A~~~ 212 (859)
.=|.+|.+.||+++..++=|||..|+.|+..||.+
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~ 40 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGL 40 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45789999999999999999999999999999875
No 115
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.53 E-value=14 Score=40.69 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 633 REQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRW 683 (859)
Q Consensus 633 kErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~ 683 (859)
-|...-+-...+|+++..|++.+...-..|..|+.-|+....+++.+|..+
T Consensus 107 ndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 107 NDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666777777777777766677777777777777776666655
No 116
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=88.37 E-value=17 Score=35.10 Aligned_cols=69 Identities=20% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 598 TVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQ 666 (859)
Q Consensus 598 ~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lq 666 (859)
.+..|+.++.+.+.-.+.|..++.+....+.-+...--.+-++....+..+..|+++|...-..+..+.
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444444444444444444444444444444444334444444445555555555544444444333
No 117
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=88.15 E-value=1.8 Score=40.74 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=19.8
Q ss_pred CCCchHHHHHhhcccHHHHHHHHhH
Q 002997 503 PQNGKDELILKLVPWVPELQNELNS 527 (859)
Q Consensus 503 ~~D~k~e~i~~l~~~v~~L~~~~~e 527 (859)
.+|.+|.+|..|...|..|+.+++.
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5688998988888888888777776
No 118
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=88.01 E-value=15 Score=33.09 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 628 QEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQ 667 (859)
Q Consensus 628 qeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqq 667 (859)
..+...+..++..|..++++.+.+..+|...+.+..++.+
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444555555555555555444444443333
No 119
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=87.72 E-value=31 Score=36.52 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=28.7
Q ss_pred hHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 002997 507 KDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLS 544 (859)
Q Consensus 507 k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ 544 (859)
.+.+--.+.+.+.+|+.++.--+++.++++.+....+.
T Consensus 13 ~e~lr~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr 50 (273)
T 3s84_A 13 SEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQ 50 (273)
T ss_dssp TTHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 44566777888899999999999999988865544433
No 120
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=87.62 E-value=4.2 Score=36.51 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 638 LKNAQSLEAQRVLLREELATEKQKVAVLQQ 667 (859)
Q Consensus 638 lerLka~EkQ~a~LQeEL~~EK~kL~~lqq 667 (859)
..++...++-+...+..|...++++.+++.
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~ 37 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKI 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544443
No 121
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=86.90 E-value=17 Score=32.66 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 637 ALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEA 709 (859)
Q Consensus 637 ~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee 709 (859)
++..+-+++.........+-+.-.++..-.+.++..-..+...-..|++...+....+.|+.+..++..++++
T Consensus 11 ~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aa 83 (114)
T 2xzr_A 11 ILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIED 83 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555555555555556666666665556665555555555566677777777777777766666666555
No 122
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.76 E-value=13 Score=34.59 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002997 664 VLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLL 743 (859)
Q Consensus 664 ~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqL 743 (859)
-|+++|.+++.-+.++++++--..+....|.+.++.++...... -.+.+.+++.+...++.+..++++|
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~-----------vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKK-----------VEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555554322221110 1133345555556666666666666
Q ss_pred hhc
Q 002997 744 KYK 746 (859)
Q Consensus 744 r~k 746 (859)
++.
T Consensus 98 r~~ 100 (121)
T 3mq7_A 98 RRE 100 (121)
T ss_dssp HHH
T ss_pred Hhh
Confidence 665
No 123
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.47 E-value=3.6 Score=39.35 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
+..+..++..|+.++..++..-.....+...+..+++.
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~ 78 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 78 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444333333333333333
No 124
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.01 E-value=12 Score=32.42 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISK 671 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEe 671 (859)
+.++.+.+..+++++.....++...+..|++
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 125
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.00 E-value=22 Score=33.05 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAK 622 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~e 622 (859)
.+..|..+..||+.+.....+++.++..++..++..+.++.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344566666666666666667776666666666666665554
No 126
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.95 E-value=19 Score=32.32 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 584 ALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVA 663 (859)
Q Consensus 584 aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~ 663 (859)
.|..+...-.++-..+..++.+.+.+..++++.+. ...++...+......+.....++..+++++.....++.
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~-------E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQA-------EAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444443222 22233334444444455555555555555555555554
Q ss_pred HHHHHHHHH
Q 002997 664 VLQQEISKA 672 (859)
Q Consensus 664 ~lqqELEea 672 (859)
-.+.+|+.+
T Consensus 85 ~~~~qLdkL 93 (96)
T 3q8t_A 85 YAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444433
No 127
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.79 E-value=20 Score=32.41 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
.++..++.++.....++..+..++.+.+..-..++....+....+++|-+.+=
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444455555554443
No 128
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.18 E-value=20 Score=39.55 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl 618 (859)
.++|+..|.-+...|+..-..++.|..-+..++.+|.+.+.
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333444454444444444444333
No 129
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.79 E-value=25 Score=32.68 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
+++.+|+.||.+..++|.....+++++++....+..+
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 3466666777776666666666666665555444333
No 130
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.54 E-value=10 Score=33.24 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLA 695 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLla 695 (859)
+++.+-..+..||.+|+++|.+...+.++.++++...+.+.....+.++....|..
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777888888777777777777666655555444444444444433
No 131
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.51 E-value=8.3 Score=36.93 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
+...++++..|+.++...+.++..+.+++++++.++..++.+
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444
No 132
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.24 E-value=17 Score=34.30 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002997 585 LTNATAQVERSSSTVHTLE 603 (859)
Q Consensus 585 L~ka~~Qlera~a~vr~LE 603 (859)
|+.+..+|+........|+
T Consensus 47 iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 3333333333333333333
No 133
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.87 E-value=21 Score=33.50 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 002997 591 QVERSSSTVHTL 602 (859)
Q Consensus 591 Qlera~a~vr~L 602 (859)
+++........|
T Consensus 51 el~~l~~~~~~L 62 (129)
T 3tnu_B 51 EIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhHHHHH
Confidence 333333333333
No 134
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=83.65 E-value=22 Score=32.97 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=8.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 722 AEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 722 aE~elqrlkdeIkrLEeELeqLr~k 746 (859)
...++.++...-.+...++.+|+..
T Consensus 75 vq~qL~~Lt~~Re~V~~eL~rLQ~e 99 (112)
T 1x79_B 75 VQEQMAVLMQSREQVSEELVRLQKD 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444455555444
No 135
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.60 E-value=0.6 Score=40.77 Aligned_cols=35 Identities=23% Similarity=0.612 Sum_probs=29.0
Q ss_pred CCccccccccccCcCcEEeCC----CchhhhHHhHHHHhh
Q 002997 800 KRERECVVCLAEEKSVVFLPC----AHQVLCQKCNELHEK 835 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~VllpC----gH~vfC~~Ci~~~~~ 835 (859)
...+.|.+|.++.-+.-|+.| .|. ||..|.+...+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCe-eeccccHHHHH
Confidence 445789999999999888888 588 99999886654
No 136
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=82.50 E-value=0.33 Score=43.64 Aligned_cols=54 Identities=26% Similarity=0.612 Sum_probs=40.1
Q ss_pred cCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCceEE
Q 002997 798 GLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQRIQV 854 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~i~i 854 (859)
.+-....|..|--..+. ++.|.-..+|..|+..... ....||+|..++...|++
T Consensus 24 s~~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCSCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCS-SSSEETTTTEECCCCSCT
T ss_pred cccCcccChhhccccCC--eeeecchhhHHHHHHHHHh-hccCCcccCCcCCcceec
Confidence 34555689999887775 4466544499999997765 346899999998777665
No 137
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.86 E-value=13 Score=32.55 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 621 AKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 621 ~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
++.......+...=+++.-++..++.+.-..+..|..-+.++..++++|+.....++.+..+
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444566666777778888888888888888888888888888888877777666444
No 138
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=81.58 E-value=40 Score=38.44 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002997 728 KLTEDIGKLESQLSLLK 744 (859)
Q Consensus 728 rlkdeIkrLEeELeqLr 744 (859)
.++..|+.|+..+..+.
T Consensus 179 ~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 179 SLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445666666555443
No 139
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=81.46 E-value=32 Score=31.49 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 642 QSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 642 ka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
+.--.++..++.+|+.-..++..++..++.....-.+|..+
T Consensus 50 ~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 50 QEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555554444443333333
No 140
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=81.39 E-value=27 Score=39.82 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=7.5
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 002997 602 LEMEHSVLKKEMEAANLR 619 (859)
Q Consensus 602 LE~E~a~lraEmEaAKl~ 619 (859)
+++|++.++..-+++|..
T Consensus 46 i~aeNeaikkrNa~aka~ 63 (497)
T 3iox_A 46 LTAENTAIKKRNADAKAD 63 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 141
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=81.29 E-value=13 Score=33.45 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 638 LKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 638 lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
++++.-++.|+..+++....++..-.++..+.+++..++..+
T Consensus 39 ~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 39 METVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344666677777777777777666655555555555555444
No 142
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=80.51 E-value=23 Score=40.15 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 572 ENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLL 651 (859)
Q Consensus 572 e~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~L 651 (859)
..+.+.|.+|+..|+.+++.-..+..-|..+.......+........-..++.+.+.+++..+++.+ +...+..|..|
T Consensus 91 ~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~--~~~~~~~i~~l 168 (461)
T 3ghg_B 91 RPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETV--NSNIPTNLRVL 168 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHH--HTHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhh--hccchhHHHHH
Confidence 3444566666766777666666666666666544444443333322223333344444444433222 12234444444
Q ss_pred HHHHHHHHHHHH
Q 002997 652 REELATEKQKVA 663 (859)
Q Consensus 652 QeEL~~EK~kL~ 663 (859)
+.-+.....++.
T Consensus 169 ~~~~~~~~~~i~ 180 (461)
T 3ghg_B 169 RSILENLRSKIQ 180 (461)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 143
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=80.50 E-value=47 Score=32.75 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELA 656 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~ 656 (859)
++.+.+..+.....-++.-++.+++++++++.. +.....-...|.+.+.+.. ....+..+..-|+.+.+.+.
T Consensus 17 r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~-------~~h~~~k~~qlre~~d~gt-t~~~i~~m~~yI~llrErea 88 (169)
T 3k29_A 17 RVDRAEKVVKEKRRLLELEQEKLRERESERDKV-------KNHYMQKIRQLREQLDDGT-TSDAILKMKAYIKVVAIQLS 88 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333332 2222222333444433322 22234444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002997 657 TEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 657 ~EK~kL~~lqqELEeaK~~veql 679 (859)
.+.++++.....++.+...++..
T Consensus 89 ~lEqkVaeq~e~Ve~e~q~Le~a 111 (169)
T 3k29_A 89 EEEEKVNKQKENVLAASKELERA 111 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 144
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=80.27 E-value=84 Score=35.55 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=17.3
Q ss_pred cccHHHHHHHHhHhHHHHHHHH---HHHHHHHHHHHH
Q 002997 515 VPWVPELQNELNSWTEWANQKV---MQAARRLSKDQA 548 (859)
Q Consensus 515 ~~~v~~L~~~~~e~~~wa~~k~---~qaA~rL~ke~~ 548 (859)
..+++.--.-+++-.+|-.+|+ ..=|+.|.+...
T Consensus 28 ~~r~~~g~~~~~el~~f~keRa~iE~eYAk~L~kLak 64 (486)
T 3haj_A 28 VKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWAR 64 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555556666666 233555444443
No 145
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.27 E-value=43 Score=32.59 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSV 608 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~ 608 (859)
.+..+...+..++-|+..++..+++++.|+..
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444544555555555555544433
No 146
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.54 E-value=24 Score=30.91 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 585 LTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 585 L~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
|++++.+|..|-.+|.-|..|+++++.+-..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555554444444433
No 147
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=79.30 E-value=46 Score=31.99 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 002997 730 TEDIGKLES 738 (859)
Q Consensus 730 kdeIkrLEe 738 (859)
.+.|+.++.
T Consensus 144 ~~k~~~~e~ 152 (155)
T 2oto_A 144 YNRANVLEK 152 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 333444443
No 148
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=78.40 E-value=13 Score=32.72 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELAT------EKQKVAVLQQEISKAENRHNQLETRWREE 686 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~------EK~kL~~lqqELEeaK~~veqlE~r~qee 686 (859)
+|..++.++..++..|.. -..++..+..++++++..+..+..+|.+.
T Consensus 30 ~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666643 23556778888888888888888888643
No 149
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.30 E-value=37 Score=30.27 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 585 LTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 585 L~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
|..++..+...=..|+.||.++..+..+++.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667788888888888777654
No 150
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=78.14 E-value=24 Score=31.01 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002997 587 NATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAA 621 (859)
Q Consensus 587 ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~ 621 (859)
.+..||+.+.....+++.++..++..++.-+.++.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444
No 151
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=78.09 E-value=26 Score=30.78 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 649 VLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIRNQ 703 (859)
Q Consensus 649 a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ekkE 703 (859)
..|+.+|......-.++.-+++.++..++.+..+++.+......+...+...++.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555566666677777777777777777766666665555543433
No 152
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=76.18 E-value=1.8 Score=45.15 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=38.1
Q ss_pred CccccccccccCcCcEEe-CCCchhhhHHhHHHHhhcC-CCCCCCccccccCc
Q 002997 801 RERECVVCLAEEKSVVFL-PCAHQVLCQKCNELHEKQG-MNDCPSCRSPIQQR 851 (859)
Q Consensus 801 ~~~~C~ICle~~~~~Vll-pCgH~vfC~~Ci~~~~~~~-~~~CP~CR~~i~~~ 851 (859)
....|.||.+.....+.- .|+|. |=..|+..|+..+ ...||.|+.+...-
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 356899999985554443 38888 8899999988644 35899999987654
No 153
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.67 E-value=31 Score=30.38 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTLE 603 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~LE 603 (859)
+..++..+.++...+++.......|+
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele 41 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELE 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 154
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=75.08 E-value=1.6e+02 Score=35.90 Aligned_cols=15 Identities=7% Similarity=-0.095 Sum_probs=10.9
Q ss_pred cCCCCCCchhhhccc
Q 002997 451 TLALPVPNTELVASS 465 (859)
Q Consensus 451 ~~~Lsqd~ar~fLss 465 (859)
++|=|.|.||+.|..
T Consensus 527 i~vET~DhArL~L~L 541 (861)
T 2zuo_A 527 ITIETADHARLQLQL 541 (861)
T ss_dssp EEEECTTCCEEEEEE
T ss_pred EEEEEcCceEEEEEE
Confidence 456677888877765
No 155
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=74.60 E-value=34 Score=30.84 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRA 620 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~ 620 (859)
.+.++..++..++.....+..++..+..++.+++..+...
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555556666655555555555544433
No 156
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.43 E-value=50 Score=29.85 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 639 KNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLE 680 (859)
Q Consensus 639 erLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE 680 (859)
.++..++.++..|+.++..++..-.....+...+..+++.+-
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666655555555555555555553
No 157
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.89 E-value=18 Score=34.59 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 585 LTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 585 L~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
+.++..++..-.......|.+...+..|+|.
T Consensus 48 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~ 78 (135)
T 2e7s_A 48 VKRLREDIAKENELRTKAEEEADKLNKEVED 78 (135)
T ss_dssp HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444
No 158
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=72.27 E-value=37 Score=30.09 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002997 582 EFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLR 619 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~ 619 (859)
+.++..++..++.....+..++..+..++.+++..+..
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555556666666666555555554433
No 159
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.03 E-value=41 Score=30.24 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEM 613 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEm 613 (859)
++......+..++.++..++..+
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344443333333333
No 160
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=71.70 E-value=1.5e+02 Score=34.03 Aligned_cols=13 Identities=8% Similarity=0.355 Sum_probs=8.3
Q ss_pred cccccCCCCCchHH
Q 002997 496 ETLGRYIPQNGKDE 509 (859)
Q Consensus 496 e~l~~~v~~D~k~e 509 (859)
+.+ .|.|++.--+
T Consensus 269 DAI-I~FPe~Sg~e 281 (551)
T 2b5u_A 269 DAV-IRFPKDSGHN 281 (551)
T ss_dssp EEE-EECCGGGCCC
T ss_pred ceE-EECCCCCCCC
Confidence 555 6888765555
No 161
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=69.70 E-value=1e+02 Score=34.87 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 632 EREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 632 ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
.-+...-+-...+|+++.-+++.+...-+.|..|+.-|+....++..||.-
T Consensus 104 dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 104 QLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666677777777777766666777776666666666555444
No 162
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=69.06 E-value=79 Score=29.94 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002997 644 LEAQRVLLREELATEKQKVAVL 665 (859)
Q Consensus 644 ~EkQ~a~LQeEL~~EK~kL~~l 665 (859)
-.+++..|..++....+.+...
T Consensus 58 HQKEi~~Lrae~~~~QRn~~K~ 79 (167)
T 4gkw_A 58 HQKEIGKLRAELGTAQRNLEKA 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444444444333
No 163
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=68.19 E-value=1.6e+02 Score=33.18 Aligned_cols=12 Identities=0% Similarity=-0.069 Sum_probs=6.8
Q ss_pred ccHHHHHHHHhH
Q 002997 516 PWVPELQNELNS 527 (859)
Q Consensus 516 ~~v~~L~~~~~e 527 (859)
..+.-|-..++.
T Consensus 22 ~G~~~L~~r~~~ 33 (486)
T 3haj_A 22 GNYKRTVKRIDD 33 (486)
T ss_dssp TTTHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 345566666665
No 164
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=67.77 E-value=48 Score=30.23 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
.|.++++++.+|.-...+....-..|-=+++.++..+|.
T Consensus 3 sL~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe 41 (103)
T 4h22_A 3 SLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLE 41 (103)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 455666666666433333333333333344444544444
No 165
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=67.41 E-value=1.8e+02 Score=33.34 Aligned_cols=11 Identities=0% Similarity=0.036 Sum_probs=6.9
Q ss_pred cHHHHHHHHhH
Q 002997 517 WVPELQNELNS 527 (859)
Q Consensus 517 ~v~~L~~~~~e 527 (859)
-..+|+.+.++
T Consensus 292 t~~elkqrqee 302 (551)
T 2b5u_A 292 SPDQVKQRQDE 302 (551)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 35667666666
No 166
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=66.56 E-value=82 Score=29.15 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=2.8
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 002997 727 SKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 727 qrlkdeIkrLEeELeqLr~k 746 (859)
++...++.+|+++-+.|..+
T Consensus 87 e~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 87 EQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHTC--------------
T ss_pred HHHHHHHHHHHhhccchhhh
Confidence 34445566777776666544
No 167
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=65.89 E-value=43 Score=29.51 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 652 REELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 652 QeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
.++|...+.+|..++.+++..+..+..+
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444544444444444444443
No 168
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=64.68 E-value=30 Score=32.35 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 002997 671 KAENRHNQLETRW 683 (859)
Q Consensus 671 eaK~~veqlE~r~ 683 (859)
+++.++.+++..+
T Consensus 44 ql~~~i~~Le~eL 56 (120)
T 3i00_A 44 QLKGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 169
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=64.26 E-value=92 Score=28.93 Aligned_cols=35 Identities=9% Similarity=0.258 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 659 KQKVAVLQQEISKAENRHNQLETRWREERMARENL 693 (859)
Q Consensus 659 K~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeL 693 (859)
...|...++.+..++..++.....|.+.......+
T Consensus 80 ~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~ 114 (150)
T 3ajw_A 80 EKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAW 114 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444433
No 170
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=63.65 E-value=77 Score=28.45 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 002997 726 MSKLTEDIGKLESQLSLL 743 (859)
Q Consensus 726 lqrlkdeIkrLEeELeqL 743 (859)
.+.++.+|..|.+.|...
T Consensus 69 v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 69 IKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 171
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=62.71 E-value=6.2 Score=33.79 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHhhcCCccccccc
Q 002997 175 TMLEMINVLRDVKTSLSIAEAMWWLLMCDLNISQACTV 212 (859)
Q Consensus 175 sL~glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~A~~~ 212 (859)
-|..+|..++..||+|..|-+.-||.-.|-|+..+++.
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~ 49 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINN 49 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHH
Confidence 36689999999999999999999999999999888763
No 172
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.31 E-value=98 Score=28.58 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEAANLRAA 621 (859)
Q Consensus 599 vr~LE~E~a~lraEmEaAKl~~~ 621 (859)
.+.|...++.++-+.|.-+.++.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~ 27 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLE 27 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 173
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.80 E-value=5.8 Score=31.19 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhCCCChHHHHHHhhhcc
Q 002997 105 LFRNVIKQISECGYSEDDATKNIARHS 131 (859)
Q Consensus 105 ~y~~Ai~~l~~~g~~~~~~~~all~ag 131 (859)
.|..+|.+|..+||+++.+.+||..++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~ 33 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASY 33 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 477899999999999998999988753
No 174
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=60.89 E-value=14 Score=35.27 Aligned_cols=30 Identities=30% Similarity=0.697 Sum_probs=18.8
Q ss_pred CccccccccccCc-----CcEEeCCCchhhhHHhHH
Q 002997 801 RERECVVCLAEEK-----SVVFLPCAHQVLCQKCNE 831 (859)
Q Consensus 801 ~~~~C~ICle~~~-----~~VllpCgH~vfC~~Ci~ 831 (859)
....|.+|...+. ..+-..|.|. +|..|..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcc-cccccCC
Confidence 3467999998763 2233456666 6666644
No 175
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=60.46 E-value=87 Score=27.36 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 002997 727 SKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 727 qrlkdeIkrLEeELeqLr~k 746 (859)
+.+..+|++++++++.|+..
T Consensus 55 ~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 55 RDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 33344455666666666544
No 176
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.51 E-value=93 Score=27.43 Aligned_cols=35 Identities=6% Similarity=0.065 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002997 580 EMEFALTNATAQVERSSSTVHTLEMEHSVLKKEME 614 (859)
Q Consensus 580 emE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmE 614 (859)
.++..+..++..++..+..+.+++.++..++..+.
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555543
No 177
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=59.45 E-value=1.2e+02 Score=33.87 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 571 EENTVKRLSEMEFALTNATAQVERSSSTVHTL 602 (859)
Q Consensus 571 ee~t~KrLsemE~aL~ka~~Qlera~a~vr~L 602 (859)
+....++|.+||..|.++++....++.-++.+
T Consensus 33 e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 33 RLTTDGELLEIEGLLQQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666665555444444333333
No 178
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=59.41 E-value=93 Score=33.34 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 002997 663 AVLQQEISKAENRHNQLET---RWREERMARENLLAQA 697 (859)
Q Consensus 663 ~~lqqELEeaK~~veqlE~---r~qeekk~kEeLlaqa 697 (859)
..+++++++++.++.+++. .|......++.|..+.
T Consensus 20 ~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~ 57 (302)
T 3ibp_A 20 MALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQC 57 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh
Confidence 3344444444444444433 3555566666665543
No 179
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.61 E-value=41 Score=27.06 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 578 LSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 578 LsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
+..+...++.++.+|++....|..+..++...+.|-.+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554444444433333333
No 180
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=58.56 E-value=1.2e+02 Score=28.22 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 644 LEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 644 ~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
+..-+..|...|...+..+...+.+++.++..+.+
T Consensus 72 ~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~ 106 (150)
T 3ajw_A 72 YQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWRE 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 181
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=57.20 E-value=8.2 Score=28.38 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=21.2
Q ss_pred HHHHHHhhhhCCCChHHHHHHhhhc
Q 002997 106 FRNVIKQISECGYSEDDATKNIARH 130 (859)
Q Consensus 106 y~~Ai~~l~~~g~~~~~~~~all~a 130 (859)
|..+|.+|..+||+++.+.+||...
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 5678999999999998888887764
No 182
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=56.65 E-value=2.3e+02 Score=31.14 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 626 SCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 626 ~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
+++.|+.--..+..+++.+......|+++|.........+.+++..++-.+-++
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql 252 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQL 252 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 344555555566667777777777777777777777777777776666665443
No 183
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=56.09 E-value=71 Score=27.90 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
.+.+++..+ ..+++..+..+..++.++..++.+|+.
T Consensus 18 ~l~e~E~~~---~~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 18 KLRDLEDSL---ARERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 346667777788888888888888766
No 184
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=55.67 E-value=1.6e+02 Score=28.99 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 528 WTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQ 562 (859)
Q Consensus 528 ~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~ 562 (859)
+.|=|-+-|-+.-+.|..+..+|..+..+++...+
T Consensus 17 r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~ 51 (169)
T 3k29_A 17 RVDRAEKVVKEKRRLLELEQEKLRERESERDKVKN 51 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666677777777777666666555
No 185
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=55.59 E-value=1e+02 Score=28.08 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 632 EREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 632 ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
++=|+++-....+-.++..+.=++...|.++..+.+.+.+.+++.
T Consensus 9 EKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~ 53 (103)
T 4h22_A 9 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQY 53 (103)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444443
No 186
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=55.42 E-value=1.5e+02 Score=28.70 Aligned_cols=11 Identities=0% Similarity=0.027 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 002997 666 QQEISKAENRH 676 (859)
Q Consensus 666 qqELEeaK~~v 676 (859)
+.|+..++.+.
T Consensus 102 ~DEl~aLqlq~ 112 (152)
T 3a7p_A 102 NAALISGTIEN 112 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 187
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=54.99 E-value=44 Score=37.44 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 571 EENTVKRLSEMEFALTNATAQVERSSSTVHTLE 603 (859)
Q Consensus 571 ee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE 603 (859)
+..+.+.|.+|+..|+.+++.-..+..-|..+.
T Consensus 33 e~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik 65 (411)
T 3ghg_C 33 QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQ 65 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345555777777777777666655555555554
No 188
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=53.76 E-value=7.3 Score=30.44 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=21.4
Q ss_pred HHHHHhhhhCCCChHHHHHHhhhcc
Q 002997 107 RNVIKQISECGYSEDDATKNIARHS 131 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~all~ag 131 (859)
.+||.+|..+||++..+.+|+...|
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~~ 29 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFACE 29 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4689999999999988888887664
No 189
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=53.50 E-value=8.1 Score=29.24 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=20.8
Q ss_pred HHHHHhhhhCCCChHHHHHHhhhc
Q 002997 107 RNVIKQISECGYSEDDATKNIARH 130 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~all~a 130 (859)
.++|.+|..+||+++.+.+||...
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 467999999999999898988874
No 190
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=53.07 E-value=1.1e+02 Score=26.42 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
++..++..+..++.++..++.+|+.
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777788777777777766
No 191
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=52.70 E-value=20 Score=44.32 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=45.7
Q ss_pred ccCCCccccccccccCcCcEEeCCCchhhhHHhHHHHhhcCCCCCCCccccccCc
Q 002997 797 GGLKRERECVVCLAEEKSVVFLPCAHQVLCQKCNELHEKQGMNDCPSCRSPIQQR 851 (859)
Q Consensus 797 e~l~~~~~C~ICle~~~~~VllpCgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~~ 851 (859)
........|||-.+...+||++|.||..+=+.+|..|... ...||.=|.++...
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLE 939 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGG
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcc
Confidence 4567788999999999999999998633999999999875 47899999988643
No 192
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=52.56 E-value=12 Score=29.92 Aligned_cols=40 Identities=18% Similarity=0.440 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhhCCC-ChHHHHHHhhhcccccCCCCchhhHHHHHHHHhhh
Q 002997 104 TLFRNVIKQISECGY-SEDDATKNIARHSIYCGGKDLVSNIVNDTLSALEK 153 (859)
Q Consensus 104 ~~y~~Ai~~l~~~g~-~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~~ 153 (859)
.-|...|.+|..+|| +++.+.+||...+ | | |.-+|.||-.
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~---g--n-----ve~Ave~L~~ 49 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATG---G--D-----INAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHT---S--C-----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhC---C--C-----HHHHHHHHHH
Confidence 568889999999999 8888888888664 3 2 5567777643
No 193
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=52.47 E-value=86 Score=27.28 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=6.4
Q ss_pred HHHHHHhHHHHHHHHHH
Q 002997 599 VHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 599 vr~LE~E~a~lraEmEa 615 (859)
++.+|.++..++..+..
T Consensus 15 lq~~E~rN~~Le~~v~~ 31 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRA 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 33333333333333333
No 194
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=51.86 E-value=2.4e+02 Score=29.79 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=17.3
Q ss_pred cccHHHHHHHHhHhHHHHHHHH---HHHHHHHHHHHH
Q 002997 515 VPWVPELQNELNSWTEWANQKV---MQAARRLSKDQA 548 (859)
Q Consensus 515 ~~~v~~L~~~~~e~~~wa~~k~---~qaA~rL~ke~~ 548 (859)
..+++.-..-+++-.+|-.+|+ ..=|+.|.+...
T Consensus 26 ~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLak 62 (337)
T 2x3v_A 26 VKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAK 62 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566666666 233444444433
No 195
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=51.39 E-value=1.2e+02 Score=26.04 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002997 590 AQVERSSSTVHTLEMEHSVLKKEMEAANLR 619 (859)
Q Consensus 590 ~Qlera~a~vr~LE~E~a~lraEmEaAKl~ 619 (859)
.++..++.....|+..+..++..++.++-+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555544433
No 196
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=50.89 E-value=2.3e+02 Score=29.36 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEK------QKVAVLQQEISKAEN 674 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK------~kL~~lqqELEeaK~ 674 (859)
.+......+..+..+|...+ .+|..+++||..+..
T Consensus 105 svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEa 145 (234)
T 3plt_A 105 SVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEA 145 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 34444444445555554444 344445554444333
No 197
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=50.54 E-value=2.6e+02 Score=29.81 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=17.9
Q ss_pred hcccHHHHHHHHhHhHHHHHHHH---HHHHHHHHHHHH
Q 002997 514 LVPWVPELQNELNSWTEWANQKV---MQAARRLSKDQA 548 (859)
Q Consensus 514 l~~~v~~L~~~~~e~~~wa~~k~---~qaA~rL~ke~~ 548 (859)
|..+++.=..-+++-.+|-.+|+ .+=|++|.+...
T Consensus 34 L~~r~~~g~~~~~el~~f~keRa~IE~eYak~L~kLak 71 (350)
T 3aco_A 34 TVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWAR 71 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556566666666 233444444443
No 198
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=50.34 E-value=1.3e+02 Score=26.19 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHHHHHH
Q 002997 600 HTLEMEHSVLKKEMEAA 616 (859)
Q Consensus 600 r~LE~E~a~lraEmEaA 616 (859)
+++...+...++|++..
T Consensus 14 rrl~E~~~q~qaEl~sL 30 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNAL 30 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 34444455555555553
No 199
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.30 E-value=67 Score=25.81 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002997 583 FALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKS 623 (859)
Q Consensus 583 ~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es 623 (859)
.+++.++.+|+..+..|..|..++..++.+..+|+.++...
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999998888888888877766544
No 200
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=50.24 E-value=43 Score=28.97 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 635 QKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWR 684 (859)
Q Consensus 635 rk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~q 684 (859)
..+-.|+..+|.+++-.+..|+.....+.+.+++++.+++++..+..+++
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888888878888777777777655544
No 201
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=50.03 E-value=8.9 Score=30.52 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhCCC-ChHHHHHHhhhcccccCCCCchhhHHHHHHHHh
Q 002997 105 LFRNVIKQISECGY-SEDDATKNIARHSIYCGGKDLVSNIVNDTLSAL 151 (859)
Q Consensus 105 ~y~~Ai~~l~~~g~-~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l 151 (859)
-|...|.+|..+|| +++.+.+||...| | | |.-+|.||
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~---g--n-----~e~A~e~L 48 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATG---G--D-----INAAIERL 48 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHT---T--C-----HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC---C--C-----HHHHHHHH
Confidence 46778999999999 8888888888763 2 2 55567666
No 202
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=49.57 E-value=53 Score=28.90 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 718 IKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 718 ~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
++...+.++..++++|.+++++|.+.+..
T Consensus 45 LKkkl~~el~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 45 LKKHKENEISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777777777776655
No 203
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=49.42 E-value=53 Score=33.01 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 632 EREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETR 682 (859)
Q Consensus 632 ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r 682 (859)
+..+.+.+++.+...-+..|+.|+....+++....++++.++.++..++.+
T Consensus 6 ~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 6 VYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666666677777777777777777777776666666665444
No 204
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=49.33 E-value=2.5e+02 Score=29.28 Aligned_cols=23 Identities=4% Similarity=0.036 Sum_probs=12.8
Q ss_pred hcccHHHHHHHHhHhHHHHHHHH
Q 002997 514 LVPWVPELQNELNSWTEWANQKV 536 (859)
Q Consensus 514 l~~~v~~L~~~~~e~~~wa~~k~ 536 (859)
|..+++.=..-+++-.+|-.+|+
T Consensus 34 l~~r~~~g~~~~~el~~f~keRa 56 (312)
T 3abh_A 34 TVKRIDDGHRLCSDLMNCLHERA 56 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555566666666
No 205
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=49.10 E-value=2.3e+02 Score=31.70 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
..+.+..++..++..+......+..|+..+...+..+
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i 121 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKI 121 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHH
Confidence 3444444444444444444444444444444433333
No 206
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=48.25 E-value=15 Score=30.21 Aligned_cols=39 Identities=5% Similarity=0.004 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHhhcCCccc
Q 002997 168 LQQMVDYTMLEMINVLRDVKTSLSIAEAMWWLLMCDLNISQ 208 (859)
Q Consensus 168 l~~l~~~sL~glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~ 208 (859)
+.++.. -|..||-.++++||.++....+|-|..+ .+|..
T Consensus 10 ~~~~~s-ql~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~ 48 (58)
T 4g3o_A 10 NLYFQG-QLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEI 48 (58)
T ss_dssp HHHHHH-HHHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHH
T ss_pred HHhhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHH
Confidence 445555 5788999999999999999999999876 56643
No 207
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=47.99 E-value=3.2 Score=44.91 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCccccccccccCcCcEEeC----CC--chhhhHHhHHHHhhcCCCCCCCcccc
Q 002997 800 KRERECVVCLAEEKSVVFLP----CA--HQVLCQKCNELHEKQGMNDCPSCRSP 847 (859)
Q Consensus 800 ~~~~~C~ICle~~~~~Vllp----Cg--H~vfC~~Ci~~~~~~~~~~CP~CR~~ 847 (859)
.....||||-..+.-.++.. =| |. +|..|...|...+ ..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l-~Cs~C~t~W~~~R-~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYL-SCSLCACEWHYVR-IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEE-EETTTCCEEECCT-TSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEE-EeCCCCCEEeecC-cCCcCCCCC
Confidence 45679999999987666642 34 44 8999988776544 689999986
No 208
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.97 E-value=8.8 Score=32.93 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHhhh
Q 002997 107 RNVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSALEK 153 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~~ 153 (859)
.++|.+|..+||+++.+.+||..++ |- +.-++.||-.
T Consensus 30 ee~I~~L~eMGF~r~~a~~AL~~~~---~n-------ve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKLVAMGFDRTQVEVALAAAD---DD-------LTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT---SC-------HHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC---CC-------HHHHHHHHHH
Confidence 3568999999999999999998753 21 5567777743
No 209
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.17 E-value=30 Score=33.63 Aligned_cols=29 Identities=28% Similarity=0.693 Sum_probs=20.7
Q ss_pred CccccccccccC-----cCcEEeCCCchhhhHHhH
Q 002997 801 RERECVVCLAEE-----KSVVFLPCAHQVLCQKCN 830 (859)
Q Consensus 801 ~~~~C~ICle~~-----~~~VllpCgH~vfC~~Ci 830 (859)
....|.+|...+ ...+-..|.|. +|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCch-hhcccc
Confidence 467899999874 33344567887 788886
No 210
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=46.98 E-value=2.3e+02 Score=28.32 Aligned_cols=59 Identities=14% Similarity=0.290 Sum_probs=34.9
Q ss_pred ccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 516 PWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFAL 585 (859)
Q Consensus 516 ~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL 585 (859)
+.+++++.+++.+ +..|..+.... ..|...+..++.+....+.++....++..+|+.+|
T Consensus 62 ~~~q~~~~~~e~l--------~s~ae~ll~l~---~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~l 120 (192)
T 2p22_C 62 NPLTDFAGKIHAF--------RDQFKQLEENF---EDLHEQKDKVQALLENARILESKYVASWQDYHSEF 120 (192)
T ss_dssp SCCHHHHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH--------HHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777773 33333332222 33555566666666666677777777777776666
No 211
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=46.48 E-value=2.1e+02 Score=27.63 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 576 KRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREEL 655 (859)
Q Consensus 576 KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL 655 (859)
+.|..+.+.|..+...++...+.-..|..|....= .+-++..+-=.+.+.++.+....+..++..|
T Consensus 20 ~Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal--------------~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl 85 (158)
T 3tul_A 20 VSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTAL--------------GEAQEATDLYEASIKKTDTAKSVYDAATKKL 85 (158)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 35666677777776666665555555543333211 1112222222334455666666666666666
Q ss_pred HHHHHHH----------HHHHHHHHHHHHHHHH
Q 002997 656 ATEKQKV----------AVLQQEISKAENRHNQ 678 (859)
Q Consensus 656 ~~EK~kL----------~~lqqELEeaK~~veq 678 (859)
.+...+| .++++..+++...+.+
T Consensus 86 ~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~ 118 (158)
T 3tul_A 86 TQAQNKLQSLDPADPGYAQAEAAVEQAGKEATE 118 (158)
T ss_dssp HHHHHHHTTC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 6666666 3444444454444433
No 212
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.28 E-value=14 Score=33.01 Aligned_cols=49 Identities=22% Similarity=0.765 Sum_probs=34.1
Q ss_pred Ccccccccccc----CcCcEEeC---CCchhhhHHhHHHHhhcCCCCCCCccccccC
Q 002997 801 RERECVVCLAE----EKSVVFLP---CAHQVLCQKCNELHEKQGMNDCPSCRSPIQQ 850 (859)
Q Consensus 801 ~~~~C~ICle~----~~~~Vllp---CgH~vfC~~Ci~~~~~~~~~~CP~CR~~i~~ 850 (859)
....|.||-+. ...-+|+. |+-- +|+.|.+--.+.+...||.|.+++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCcccc
Confidence 33589999986 11224554 5545 89999994445566789999999863
No 213
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.16 E-value=18 Score=29.76 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHhhcCCccc
Q 002997 176 MLEMINVLRDVKTSLSIAEAMWWLLMCDLNISQ 208 (859)
Q Consensus 176 L~glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~ 208 (859)
|..||--++++||+++....+|-|.... +|..
T Consensus 13 ~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~ 44 (58)
T 2ejs_A 13 LNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEI 44 (58)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHH
Confidence 5568888999999999999999998876 6643
No 214
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=44.62 E-value=1.5e+02 Score=25.54 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002997 572 ENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEM 613 (859)
Q Consensus 572 e~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEm 613 (859)
++...++.++...-.....++.+......+++..+.+++.++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666666666666666666666655555544
No 215
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.45 E-value=18 Score=30.59 Aligned_cols=38 Identities=3% Similarity=-0.028 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHhhcCCcccccc
Q 002997 174 YTMLEMINVLRDVKTSLSIAEAMWWLLMCDLNISQACT 211 (859)
Q Consensus 174 ~sL~glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~A~~ 211 (859)
......|..|++.||.+......|-|..++.|+..||.
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId 53 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATID 53 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 34456677899999999999999999999999988865
No 216
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.35 E-value=11 Score=31.16 Aligned_cols=40 Identities=28% Similarity=0.726 Sum_probs=29.5
Q ss_pred cccccccccCcCcEE---eCCCchhhhHHhHHHHhhcCCCCCCCc
Q 002997 803 RECVVCLAEEKSVVF---LPCAHQVLCQKCNELHEKQGMNDCPSC 844 (859)
Q Consensus 803 ~~C~ICle~~~~~Vl---lpCgH~vfC~~Ci~~~~~~~~~~CP~C 844 (859)
..|..|...+.+... ..|.+. ||..|-. +.......||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhH-HHHhhccCCcCC
Confidence 569999998765442 368898 9999965 333356789999
No 217
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.80 E-value=15 Score=30.40 Aligned_cols=36 Identities=19% Similarity=0.478 Sum_probs=27.0
Q ss_pred HHHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHhh
Q 002997 107 RNVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSALE 152 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~ 152 (859)
.++|.+|..+||+++.+.+||...+ | | +.-++.||-
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~---~--n-----ve~A~e~L~ 45 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG---N--N-----LEAALNVLL 45 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT---S--C-----HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC---C--C-----HHHHHHHHH
Confidence 4679999999999998988887653 3 1 555666663
No 218
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=43.70 E-value=3e+02 Score=28.62 Aligned_cols=11 Identities=0% Similarity=-0.028 Sum_probs=7.5
Q ss_pred cHHHHHHHHhH
Q 002997 517 WVPELQNELNS 527 (859)
Q Consensus 517 ~v~~L~~~~~e 527 (859)
....|-..++.
T Consensus 30 g~~~l~~r~~~ 40 (312)
T 3abh_A 30 NYKRTVKRIDD 40 (312)
T ss_dssp TTHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 56777766666
No 219
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=43.19 E-value=47 Score=23.45 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 649 VLLREELATEKQKVAVLQQEI 669 (859)
Q Consensus 649 a~LQeEL~~EK~kL~~lqqEL 669 (859)
+.|+++|+..+++++.++=++
T Consensus 5 aalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 220
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=43.05 E-value=2.9e+02 Score=28.28 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002997 658 EKQKVAVLQQEISKA 672 (859)
Q Consensus 658 EK~kL~~lqqELEea 672 (859)
.+.+....-++++.+
T Consensus 142 aK~~Y~~~~~e~e~a 156 (305)
T 2efl_A 142 SKRRFERDCKEADRA 156 (305)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 221
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=42.98 E-value=14 Score=30.30 Aligned_cols=35 Identities=14% Similarity=0.002 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhhcCCccccccc
Q 002997 178 EMINVLRDVKTSLSIAEAMWWLLMCDLNISQACTV 212 (859)
Q Consensus 178 glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~A~~~ 212 (859)
.-|..|++.||.++....=.-|..++.|+..||.+
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~ 45 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINS 45 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45778999999999999999999999999998764
No 222
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=41.91 E-value=66 Score=35.36 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=30.5
Q ss_pred HHHHhhcccHHHHHHHHhHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 509 ELILKLVPWVPELQNELNSWTEWANQK----VMQAARRLSKDQAELKALRHEKQEVEQ 562 (859)
Q Consensus 509 e~i~~l~~~v~~L~~~~~e~~~wa~~k----~~qaA~rL~ke~~eLk~LR~ekeelq~ 562 (859)
+.+..+..++.+|+.++.+=.=|.+++ +++....|...+...+.++...++++.
T Consensus 3 ~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~ 60 (354)
T 3d5a_X 3 DKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQ 60 (354)
T ss_dssp HHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999998755566533 333333333334333444444333333
No 223
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=41.59 E-value=1.9e+02 Score=26.45 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002997 575 VKRLSEMEFALTNATAQVERSS 596 (859)
Q Consensus 575 ~KrLsemE~aL~ka~~Qlera~ 596 (859)
+..+.+++..|...+.||..|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iAr 55 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTAR 55 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 224
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.28 E-value=4.4e+02 Score=29.88 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 638 LKNAQSLEAQRVLLREELATE 658 (859)
Q Consensus 638 lerLka~EkQ~a~LQeEL~~E 658 (859)
+..|..+..+|..|+..|...
T Consensus 138 q~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 138 QNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555554443
No 225
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.19 E-value=1.8e+02 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEaAKl 618 (859)
++..++.....|+..+..++..++.++.
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445544443
No 226
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.65 E-value=21 Score=29.65 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHhhcCCccc
Q 002997 176 MLEMINVLRDVKTSLSIAEAMWWLLMCDLNISQ 208 (859)
Q Consensus 176 L~glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~ 208 (859)
|..||--++++||+++....+|-|.... +|..
T Consensus 13 l~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~ 44 (61)
T 2ekf_A 13 LATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDL 44 (61)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHH
Confidence 4557788999999999999999998876 6644
No 227
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.44 E-value=81 Score=35.68 Aligned_cols=28 Identities=4% Similarity=0.176 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEM 604 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~ 604 (859)
++-+++++.+.+..+++..++....+..
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk 59 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAV 59 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 228
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=40.31 E-value=2.6e+02 Score=26.96 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 663 AVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 663 ~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
..+.++++++-..+.+.-.++..+.+....+...++
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~ 106 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLV 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444
No 229
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.23 E-value=1.9e+02 Score=25.28 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 652 REELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAA 698 (859)
Q Consensus 652 QeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE 698 (859)
|.-|.++-+.-..++++|...+......+.++++.+...++|..+++
T Consensus 16 QSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 16 QEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444455555555555544443
No 230
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=40.19 E-value=3.2e+02 Score=27.95 Aligned_cols=24 Identities=8% Similarity=0.125 Sum_probs=12.3
Q ss_pred hhcccHHHHHHHHhHhHHHHHHHH
Q 002997 513 KLVPWVPELQNELNSWTEWANQKV 536 (859)
Q Consensus 513 ~l~~~v~~L~~~~~e~~~wa~~k~ 536 (859)
.|..+++.=-.-+++-.+|-.+|+
T Consensus 18 ~l~~r~~~g~~~~~el~~f~~eRa 41 (305)
T 2efl_A 18 NLEKHTQWGIDILEKYIKFVKERT 41 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444555555666665
No 231
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.72 E-value=25 Score=28.32 Aligned_cols=30 Identities=33% Similarity=0.334 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 647 QRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 647 Q~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
+...|+.|+...+.++..+.+++++.++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544
No 232
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.65 E-value=9.7 Score=29.45 Aligned_cols=35 Identities=11% Similarity=0.324 Sum_probs=27.2
Q ss_pred HHHHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHh
Q 002997 106 FRNVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSAL 151 (859)
Q Consensus 106 y~~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l 151 (859)
+.++|.+|..+||+++.+.+||... | | +.-++.|+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~----~--n-----~e~A~~~L 43 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNT----S--T-----MEQATEYL 43 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHS----C--S-----HHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc----C--C-----HHHHHHHH
Confidence 3567999999999999999998875 2 2 55667666
No 233
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=39.62 E-value=21 Score=28.00 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.4
Q ss_pred HHHHHhhhhCCCChHHHHHHhhhcc
Q 002997 107 RNVIKQISECGYSEDDATKNIARHS 131 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~all~ag 131 (859)
..+|.+|+.+||+.+.+.+||..+.
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~ 29 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQ 29 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 5689999999999999999998874
No 234
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=39.51 E-value=2.1e+02 Score=25.67 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002997 646 AQRVLLREELATEKQKVA 663 (859)
Q Consensus 646 kQ~a~LQeEL~~EK~kL~ 663 (859)
+++.+|+.||...+++|.
T Consensus 67 ~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 67 ARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666655553
No 235
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=39.43 E-value=4.9e+02 Score=29.83 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCCchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 503 PQNGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEME 582 (859)
Q Consensus 503 ~~D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE 582 (859)
|+|.-.--=..+..+|++|+.+.++ ..-++.-...-.+.+-++.+++...-+.....+....+++.-++
T Consensus 84 ~pDPLsPgE~~~~~Kl~eLE~e~k~-----------d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~Le 152 (526)
T 3iyk_A 84 IPDPLSPGERGIQAKLKELEDEQRN-----------ELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILN 152 (526)
T ss_pred CCCCCCHhHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 583 FALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKV 662 (859)
Q Consensus 583 ~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL 662 (859)
.+++....-+..-+..+.+|.. .-..|...+=.+-..-+..+...+..|++-|+.|+.-+
T Consensus 153 kAl~s~~~i~~~e~~~l~~L~~--------------------AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~ 212 (526)
T 3iyk_A 153 KAVTSYNKILTEEDLQMRRLAT--------------------ALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGM 212 (526)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH--------------------HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q ss_pred -HHHHHHHHHHHHHHHH
Q 002997 663 -AVLQQEISKAENRHNQ 678 (859)
Q Consensus 663 -~~lqqELEeaK~~veq 678 (859)
++.=+|....-.++.+
T Consensus 213 ~EEAIqe~~dmsaeI~E 229 (526)
T 3iyk_A 213 QEEAIQEIAGMTADVLE 229 (526)
T ss_pred HHHHHHHHhcchHHHHH
No 236
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.09 E-value=1.2e+02 Score=27.42 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002997 590 AQVERSSSTVHTLEMEHSVLKKEMEAANLRA 620 (859)
Q Consensus 590 ~Qlera~a~vr~LE~E~a~lraEmEaAKl~~ 620 (859)
.+++.....|..|+.|+..++.+.+..+.+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666666666665544443
No 237
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.78 E-value=2.1e+02 Score=25.35 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl 618 (859)
.+..|..+..+|+.+.....+++.++..++++++..+.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777777777777777777766543
No 238
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=38.02 E-value=21 Score=28.69 Aligned_cols=35 Identities=11% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHH
Q 002997 108 NVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVN 145 (859)
Q Consensus 108 ~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~ 145 (859)
..|++|+.+||+.+.+.+||..+. |--|--+||++
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~---nnve~AaniLl 47 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQ---NNVEVARSILR 47 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTT---TCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 489999999999999999998763 33334455543
No 239
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.54 E-value=2.2e+02 Score=25.30 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
....+|.++..|+.+++..+.++.++.++++..+...
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665555544
No 240
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=37.43 E-value=3.3e+02 Score=27.31 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=16.6
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcC
Q 002997 725 EMSKLTEDIGKLESQLSLLKYKS 747 (859)
Q Consensus 725 elqrlkdeIkrLEeELeqLr~k~ 747 (859)
+-+.+.+.|+-.++++..|+.+.
T Consensus 163 eqReLddkIklgeEQL~~L~~sL 185 (190)
T 3thf_A 163 DARDLAVRIKGSEEQLSSLSDAL 185 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHhHHHHHHhhHHHHHHHHHhh
Confidence 44556667889999999887763
No 241
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=37.10 E-value=4.6e+02 Score=28.82 Aligned_cols=10 Identities=0% Similarity=-0.486 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q 002997 434 LAHPVSDSPS 443 (859)
Q Consensus 434 ~~~~~i~~~~ 443 (859)
.+++++++||
T Consensus 78 ~SL~eLV~~Y 87 (373)
T 3hhm_B 78 SSVVELINHY 87 (373)
T ss_dssp SSSHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3444445544
No 242
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=36.59 E-value=4.1e+02 Score=28.17 Aligned_cols=11 Identities=0% Similarity=-0.028 Sum_probs=7.6
Q ss_pred cHHHHHHHHhH
Q 002997 517 WVPELQNELNS 527 (859)
Q Consensus 517 ~v~~L~~~~~e 527 (859)
.+..|-..++.
T Consensus 30 g~~~L~~r~~~ 40 (350)
T 3aco_A 30 NYKRTVKRIDD 40 (350)
T ss_dssp TTHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 56777777666
No 243
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=35.99 E-value=6.3e+02 Score=30.11 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=4.0
Q ss_pred HHHHHhhh
Q 002997 146 DTLSALEK 153 (859)
Q Consensus 146 nt~~~l~~ 153 (859)
.+|.|++.
T Consensus 71 ~~l~~~~~ 78 (863)
T 1sjj_A 71 KALDFIAS 78 (863)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
No 244
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=35.89 E-value=2.6e+02 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002997 584 ALTNATAQVERSSSTVHTLEMEHSVLKKEM 613 (859)
Q Consensus 584 aL~ka~~Qlera~a~vr~LE~E~a~lraEm 613 (859)
|+.-++..++.++..+..++..+..+++++
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 245
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.73 E-value=41 Score=30.80 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=45.5
Q ss_pred CCchhHHHHH--HHHHHhHHHHHHHHHHhhhhC-CCChHHHHHHhhhcccccCCCCchhhHHHHHHHHhhhc
Q 002997 86 WDDPIVCALG--ELLSSGLNTLFRNVIKQISEC-GYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSALEKV 154 (859)
Q Consensus 86 w~~~~~~~L~--~~Ll~~i~~~y~~Ai~~l~~~-g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~~~ 154 (859)
-..+|++||| ++|++.=..-|.+-|.+|..+ |++++.+..||..++.+ |.-+|.||-.+
T Consensus 17 ~~~aTaeQ~rLAq~i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ngD----------l~~AI~~Lleg 78 (104)
T 1wj7_A 17 RPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGD----------VNRAINVLLEG 78 (104)
T ss_dssp SSSSSHHHHHHHHHHHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSC----------HHHHHHHHHTC
T ss_pred ccccCHHHHHHHHHHhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCCC----------HHHHHHHHHhC
Confidence 3478999987 455565556688899999998 99999999999987655 56677777443
No 246
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.63 E-value=1.3e+02 Score=26.18 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=6.4
Q ss_pred HHHHHHHhHHHHHHHH
Q 002997 598 TVHTLEMEHSVLKKEM 613 (859)
Q Consensus 598 ~vr~LE~E~a~lraEm 613 (859)
.|..||.+++.+.++|
T Consensus 30 ~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 247
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=35.24 E-value=2.6e+02 Score=29.07 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 624 AVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVL 665 (859)
Q Consensus 624 ~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~l 665 (859)
...++.+....+.+.++|..+|..-..|+.+|...+.++.-+
T Consensus 183 D~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 183 EVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344555666777888889999999888888888887777543
No 248
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.98 E-value=83 Score=35.17 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.3
Q ss_pred HHHHHH
Q 002997 721 EAEKEM 726 (859)
Q Consensus 721 eaE~el 726 (859)
+..+++
T Consensus 49 ~l~n~~ 54 (412)
T 3u06_A 49 ELHNTV 54 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333443
No 249
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=34.53 E-value=27 Score=28.35 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=26.2
Q ss_pred HHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHH
Q 002997 108 NVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVN 145 (859)
Q Consensus 108 ~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~ 145 (859)
..|++|+.+||+.+.+.+||..+. .--+.-+||.+
T Consensus 9 ~~Ia~L~smGfsr~da~~AL~ia~---Ndv~~AtNiLl 43 (56)
T 2juj_A 9 SEIENLMSQGYSYQDIQKALVIAQ---NNIEMAKNILR 43 (56)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTT---TCSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhc---ccHHHHHHHHH
Confidence 489999999999999999998764 12233566654
No 250
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.49 E-value=16 Score=30.38 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.3
Q ss_pred HHHhhhhCCCChHHHHHHhhhcc
Q 002997 109 VIKQISECGYSEDDATKNIARHS 131 (859)
Q Consensus 109 Ai~~l~~~g~~~~~~~~all~ag 131 (859)
+|.+|..+||++.++.+||...|
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~ 34 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATG 34 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 67889999999999999999764
No 251
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=33.73 E-value=3.6e+02 Score=26.61 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 636 KALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 636 k~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
.+..+|..+......|+++|.........+.+++..++-.+-++
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL 143 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQL 143 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45556666666666666666666666666666665555555443
No 252
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.68 E-value=2e+02 Score=23.60 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKAENR 675 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~ 675 (859)
+...++.+...|+.+....+.++..++.|+..++.-
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554443
No 253
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=33.63 E-value=4.1e+02 Score=27.25 Aligned_cols=188 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred hcccHHHHHHHHhHhHHHHHHHH---HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 002997 514 LVPWVPELQNELNSWTEWANQKV---MQAARRLSKDQAELK----------ALRHEKQEVEQCQKDKQILEENTVKRL-S 579 (859)
Q Consensus 514 l~~~v~~L~~~~~e~~~wa~~k~---~qaA~rL~ke~~eLk----------~LR~ekeelq~lkkekq~lee~t~KrL-s 579 (859)
|..+++.=-.-+++-.+|-.+|+ ..=|++|.+...... +++.--..+..........-......| .
T Consensus 13 l~~r~~~g~~~~~el~~f~keRa~iE~~Yak~L~kL~~~~~~~~~~~~~~gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~ 92 (290)
T 3i2w_A 13 TTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCN 92 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 580 EMEFALTNATAQV-----------ERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQR 648 (859)
Q Consensus 580 emE~aL~ka~~Ql-----------era~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~ 648 (859)
++...|....... -.......++...+.....+++.+|..+...-+.......+...+........+++
T Consensus 93 ~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~ 172 (290)
T 3i2w_A 93 DVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQV 172 (290)
T ss_dssp THHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-----------------
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 649 VLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQAAAIR 701 (859)
Q Consensus 649 a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaqaE~ek 701 (859)
.+++..+.....++.....+-...-.........|.+..-..=+.+..++.++
T Consensus 173 ~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~lee~R 225 (290)
T 3i2w_A 173 KKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTR 225 (290)
T ss_dssp ---CTTSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
No 254
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.36 E-value=18 Score=29.80 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=26.9
Q ss_pred HHHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHh
Q 002997 107 RNVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSAL 151 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l 151 (859)
...|.+|..+||+++.+.+||...+ | | |.-++.||
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~---~------n-ve~A~e~L 44 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATN---N------S-LERAVDWI 44 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT---S------C-SHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC---C------C-HHHHHHHH
Confidence 4678999999999999999998763 2 2 45566666
No 255
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.80 E-value=2.2e+02 Score=25.00 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002997 655 LATEKQKVAVLQQEISKAEN 674 (859)
Q Consensus 655 L~~EK~kL~~lqqELEeaK~ 674 (859)
|...+.++..++.++++++.
T Consensus 55 ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 55 IEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444333
No 256
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.20 E-value=21 Score=31.21 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.2
Q ss_pred HHHHHHhhhhCCCChHHHHHHhhhcc
Q 002997 106 FRNVIKQISECGYSEDDATKNIARHS 131 (859)
Q Consensus 106 y~~Ai~~l~~~g~~~~~~~~all~ag 131 (859)
+..+|.+|..+||++..+.+||..+|
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~ 54 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTS 54 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHc
Confidence 34588899999999999999999774
No 257
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.99 E-value=2.3e+02 Score=28.06 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 002997 597 STVHTLEMEHSVLKKEMEAANL 618 (859)
Q Consensus 597 a~vr~LE~E~a~lraEmEaAKl 618 (859)
+.|+.+..|+.+++.++.....
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666655443
No 258
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.95 E-value=2.5e+02 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002997 582 EFALTNATAQVERSSSTVHTLEMEHSV 608 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~LE~E~a~ 608 (859)
+..|..+...|+.....+.+++.-+++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444333
No 259
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=31.57 E-value=2.1e+02 Score=27.94 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 002997 690 RENLLAQAAAIRNQREQLEAAAKAEEEMIKLEAEKEMSKLTEDIGKLESQLSLLKYK 746 (859)
Q Consensus 690 kEeLlaqaE~ekkE~e~~ee~~k~e~e~~r~eaE~elqrlkdeIkrLEeELeqLr~k 746 (859)
.+..++++...+++..+++.....+...+++....+...+++.+..++..|...-..
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666677777777777777777777777665443
No 260
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=31.56 E-value=93 Score=21.97 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 645 EAQRVLLREELATEKQKVAVL 665 (859)
Q Consensus 645 EkQ~a~LQeEL~~EK~kL~~l 665 (859)
..+++.|+.+|+..+-+++.+
T Consensus 8 kqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 261
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.45 E-value=2.2e+02 Score=28.56 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 642 QSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 642 ka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
..+..+...|-+++.+...++..++++++.++.+...
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334444444444444444444444555544444444
No 262
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.15 E-value=21 Score=30.44 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.3
Q ss_pred HHHHHhhhhCCCChHHHHHHhhhcc
Q 002997 107 RNVIKQISECGYSEDDATKNIARHS 131 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~all~ag 131 (859)
..+|.+|..+||++..+.+||...|
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~ 34 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTG 34 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3578999999999999999998664
No 263
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=30.64 E-value=2.2e+02 Score=25.90 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 606 HSVLKKEMEAANLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWRE 685 (859)
Q Consensus 606 ~a~lraEmEaAKl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qe 685 (859)
......+...|..+..++...+..|.++..-+.-.+.-.-. ..|...-.+|..+++.|++..+.+++-..||++
T Consensus 16 ~q~~~~kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs------~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~q 89 (101)
T 3teq_A 16 VQYYNIKKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHS------SSLDDVDHKILTAKQALSEATAALRERLHRWQQ 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTC------GGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHhhhchheeeehhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555566666665555554444411 112233345555566666666666677777776
Q ss_pred HHH
Q 002997 686 ERM 688 (859)
Q Consensus 686 ekk 688 (859)
.+.
T Consensus 90 IE~ 92 (101)
T 3teq_A 90 IEI 92 (101)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 264
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=30.09 E-value=1.3e+02 Score=23.90 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 632 EREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAE 673 (859)
Q Consensus 632 ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK 673 (859)
.+...+++.+..+|+|-..|++.|-.+ +|.++.++|++.+
T Consensus 6 rrr~e~ld~l~~LEkqF~~LkEqlY~E--Rl~ql~~~Leel~ 45 (49)
T 2xus_A 6 RRRSECVSEMLDLEKQFSELKEKLFRE--RLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 455667788888888888888887554 3566666666543
No 265
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.96 E-value=52 Score=28.22 Aligned_cols=40 Identities=10% Similarity=0.366 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhCCCC-hHHHHHHhhhcccccCCCCchhhHHHHHHHHhhhc
Q 002997 105 LFRNVIKQISECGYS-EDDATKNIARHSIYCGGKDLVSNIVNDTLSALEKV 154 (859)
Q Consensus 105 ~y~~Ai~~l~~~g~~-~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~~~ 154 (859)
.|...|.+|..+||. ++...+||..++ |- |.-+|.||-.+
T Consensus 28 ~ye~qi~qL~eMGF~dr~~~~~AL~~t~---Gn-------ve~Ave~L~~~ 68 (74)
T 1vej_A 28 RYQQELEELKALGFANRDANLQALVATD---GD-------IHAAIEMLLGA 68 (74)
T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHHHTT---SC-------HHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhC---CC-------HHHHHHHHHhC
Confidence 456678999999994 566678887653 32 55678777443
No 266
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=29.94 E-value=4.6e+02 Score=26.74 Aligned_cols=34 Identities=6% Similarity=0.006 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 596 SSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQE 629 (859)
Q Consensus 596 ~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqe 629 (859)
.....++..++.....+++.+|..+....+....
T Consensus 115 ~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~ 148 (301)
T 2efk_A 115 FQEGRRAQQQLENGFKQLENSKRKFERDCREAEK 148 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666665555444433
No 267
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=29.71 E-value=2.1e+02 Score=31.63 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=13.4
Q ss_pred HhhcccHHHHHHHHhHhHHHHHHH
Q 002997 512 LKLVPWVPELQNELNSWTEWANQK 535 (859)
Q Consensus 512 ~~l~~~v~~L~~~~~e~~~wa~~k 535 (859)
..+..++.+|+.++.+=.=|.+++
T Consensus 28 ~~~~~r~~el~~~~~~p~~w~d~~ 51 (365)
T 1gqe_A 28 DAKKERLEEVNAELEQPDVWNEPE 51 (365)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGSHH
T ss_pred HHHHHHHHHHHHHhcCCccccCHH
Confidence 344566666666666544455433
No 268
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.59 E-value=1.1e+02 Score=33.26 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002997 651 LREELATEKQKVAVLQQEIS 670 (859)
Q Consensus 651 LQeEL~~EK~kL~~lqqELE 670 (859)
++..|.....++..|+..++
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHH
Confidence 33333333333333333333
No 269
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=28.92 E-value=57 Score=26.59 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhCCCC-hHHHHHHhhhcc
Q 002997 103 NTLFRNVIKQISECGYS-EDDATKNIARHS 131 (859)
Q Consensus 103 ~~~y~~Ai~~l~~~g~~-~~~~~~all~ag 131 (859)
+..|...|.+|..+||. ++...+||..++
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~~ 43 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRSG 43 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHhC
Confidence 35677889999999995 556678887654
No 270
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=28.77 E-value=39 Score=26.14 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhhCCCC-hHHHHHHhhhcc
Q 002997 104 TLFRNVIKQISECGYS-EDDATKNIARHS 131 (859)
Q Consensus 104 ~~y~~Ai~~l~~~g~~-~~~~~~all~ag 131 (859)
.-|...|.+|..+||. +....+||..++
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~ 33 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSG 33 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhC
Confidence 4678899999999995 445677877654
No 271
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=28.16 E-value=3.3e+02 Score=24.47 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002997 580 EMEFALTNATAQVERSSSTVHTLEMEHSVL 609 (859)
Q Consensus 580 emE~aL~ka~~Qlera~a~vr~LE~E~a~l 609 (859)
++-..|-.+++.++|.+..|-.+...+...
T Consensus 10 ~~~~~~~~~~~~~~ri~~aig~~d~ri~~N 39 (114)
T 2xzr_A 10 EILSKIYHIENEIARIKKLIGAIDGRVTRN 39 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhHHHHhh
Confidence 333334444555555555555554433333
No 272
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.00 E-value=32 Score=28.45 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHhhh
Q 002997 108 NVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSALEK 153 (859)
Q Consensus 108 ~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~~ 153 (859)
.+|.+|..+||++..+.+||...|. . | |.-++.|+-.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~---~-----n-ve~A~ewLl~ 47 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGN---Q-----G-IEAAMDWLME 47 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTS---C-----C-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcC---C-----C-HHHHHHHHHh
Confidence 4688999999999999999986531 1 1 5566766633
No 273
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=27.84 E-value=1e+02 Score=34.03 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=19.6
Q ss_pred HHHHhhcccHHHHHHHHhHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 509 ELILKLVPWVPELQNELNSWTEWANQKV----MQAARRLSKDQAELKALRHEKQEVEQ 562 (859)
Q Consensus 509 e~i~~l~~~v~~L~~~~~e~~~wa~~k~----~qaA~rL~ke~~eLk~LR~ekeelq~ 562 (859)
..+..+..++.+|+.++.+=.=|.+++- ++....|...+...+.++...++++.
T Consensus 17 ~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~ 74 (371)
T 1zbt_A 17 DQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIAD 74 (371)
T ss_dssp HHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888899988888666776433 22233344444444444444433333
No 274
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.64 E-value=24 Score=30.95 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=28.4
Q ss_pred HHHHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHhhh
Q 002997 106 FRNVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSALEK 153 (859)
Q Consensus 106 y~~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~~ 153 (859)
+...|.+|+.+||+++.+.+||...+- | |.-++.||=.
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~g---------d-ve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGG---------N-VQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTT---------C-HHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCC---------C-HHHHHHHHHh
Confidence 345788999999999999999887642 1 6667777744
No 275
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.09 E-value=30 Score=29.42 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=28.3
Q ss_pred HHHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHhhhc
Q 002997 107 RNVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSALEKV 154 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~~~ 154 (859)
.++|.+|..+||++..+.+||...| | | |.-++.||-.+
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~---~--n-----ve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG---G--D-----IEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT---S--C-----HHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC---C--C-----HHHHHHHHHhC
Confidence 3468889999999999999988754 3 1 56677777443
No 276
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.87 E-value=1e+02 Score=26.58 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 637 ALKNAQSLEAQRVLLREELATEKQKVAVLQQEI 669 (859)
Q Consensus 637 ~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqEL 669 (859)
+.+.++.++.+...++.+++..+.+...++++|
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544444444444444
No 277
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.81 E-value=3.1e+02 Score=23.68 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 634 EQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISK 671 (859)
Q Consensus 634 Erk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEe 671 (859)
..+++.++..+-.+...++.|+...++...+++..+.+
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776666555554444433
No 278
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=26.81 E-value=5e+02 Score=26.06 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=14.7
Q ss_pred CchHHHHHhhcccHHHHHHHHhH
Q 002997 505 NGKDELILKLVPWVPELQNELNS 527 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e 527 (859)
-+|+|+|.-|...+..|+.+.+.
T Consensus 15 ~Kk~ELi~~L~~kL~~L~~eqe~ 37 (190)
T 3thf_A 15 QKMDELIKHLNQKIVSLKREQQT 37 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766655443
No 279
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.78 E-value=64 Score=33.81 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQ 678 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veq 678 (859)
++.++.++..++...+..+..+..+++++..++.+++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 280
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.71 E-value=2.7e+02 Score=23.56 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 640 NAQSLEAQRVLLREELATEKQKVAVLQQEISKA 672 (859)
Q Consensus 640 rLka~EkQ~a~LQeEL~~EK~kL~~lqqELEea 672 (859)
.++.+|.++..++........+...|+.++..+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444333333333433333
No 281
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=26.63 E-value=5e+02 Score=26.08 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002997 537 MQAARRLSKDQAELKALRHEKQEVEQCQKDKQILEENTVKRLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKKEMEAA 616 (859)
Q Consensus 537 ~qaA~rL~ke~~eLk~LR~ekeelq~lkkekq~lee~t~KrLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lraEmEaA 616 (859)
.+.|..|.+....+..++.+.+..++..++...--....+++......+.++....+..-..+.++..+ .....+++.+
T Consensus 90 ~~~a~~l~~~~~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~~-~~s~k~~eK~ 168 (276)
T 2v0o_A 90 LDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKE-GATQREIEKA 168 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 617 NLRAAKSAVSCQEAFEREQKALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRHNQLETRWREERMARENLLAQ 696 (859)
Q Consensus 617 Kl~~~es~k~lqeI~ekErk~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~kEeLlaq 696 (859)
+.+...+..........=......+ .+.-...++.=-..+..++..++.-|-..-..+...-..+.+.-.........
T Consensus 169 ~~k~~ka~~~Y~~~v~~~n~~~~~~--~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (276)
T 2v0o_A 169 AVKSKKATDTYKLYVEKYALAKADF--EQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMAN 246 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Q ss_pred H
Q 002997 697 A 697 (859)
Q Consensus 697 a 697 (859)
+
T Consensus 247 i 247 (276)
T 2v0o_A 247 T 247 (276)
T ss_dssp S
T ss_pred C
No 282
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.59 E-value=30 Score=28.67 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.4
Q ss_pred HHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHh
Q 002997 108 NVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSAL 151 (859)
Q Consensus 108 ~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l 151 (859)
.+|.+|..+||++..+.+||...| | .| |.-++.||
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~---~-----~n-ve~A~ewL 55 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTG---G-----RS-VQTACDWL 55 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTT---T-----SC-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC---C-----CC-HHHHHHHH
Confidence 478999999999999999998753 2 12 55667666
No 283
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.96 E-value=57 Score=34.20 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002997 649 VLLREELATEKQKVAVLQQEISK 671 (859)
Q Consensus 649 a~LQeEL~~EK~kL~~lqqELEe 671 (859)
..++.++.....+...+..++.+
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ 79 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKE 79 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 284
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.95 E-value=35 Score=27.55 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=25.2
Q ss_pred HHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHH
Q 002997 109 VIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVN 145 (859)
Q Consensus 109 Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~ 145 (859)
.|++|+.+||+.+.+.+||..+. |--|--.||+.
T Consensus 12 ~I~~L~~lGF~r~~ai~AL~~a~---nnve~Aa~iL~ 45 (53)
T 2d9s_A 12 EIERLMSQGYSYQDIQKALVIAH---NNIEMAKNILR 45 (53)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTT---TCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhc---CCHHHHHHHHH
Confidence 39999999999999999998764 33333455543
No 285
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=25.87 E-value=3.9e+02 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 655 LATEKQKVAVLQQEISKAENRHNQLETRWREERMA 689 (859)
Q Consensus 655 L~~EK~kL~~lqqELEeaK~~veqlE~r~qeekk~ 689 (859)
|...-.+|..+++.|.+..+.+++-..||++.+..
T Consensus 92 lD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~L 126 (136)
T 3ter_A 92 SDQVDSKIFALKSRMEKIHTLTRETQERWLQIESL 126 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666667777777776543
No 286
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=25.24 E-value=3.4e+02 Score=23.65 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002997 545 KDQAELKALRHEKQEVEQC 563 (859)
Q Consensus 545 ke~~eLk~LR~ekeelq~l 563 (859)
.-++|++.||-+..++++-
T Consensus 23 ~L~qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666663
No 287
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.10 E-value=2.6e+02 Score=22.17 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 651 LREELATEKQKVAVLQQEISK 671 (859)
Q Consensus 651 LQeEL~~EK~kL~~lqqELEe 671 (859)
...++...+.++.++...+..
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~ 44 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNT 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 288
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.03 E-value=1.4e+02 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 637 ALKNAQSLEAQRVLLREELATEKQKVAVLQQEI 669 (859)
Q Consensus 637 ~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqEL 669 (859)
+.+.++.+..+...++.++...+.+...+++++
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444444444
No 289
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.02 E-value=2e+02 Score=32.95 Aligned_cols=20 Identities=0% Similarity=-0.029 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002997 581 MEFALTNATAQVERSSSTVH 600 (859)
Q Consensus 581 mE~aL~ka~~Qlera~a~vr 600 (859)
++++.+.+..+++..++...
T Consensus 38 ld~~~r~~~~~~~~l~~~rn 57 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLN 57 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 290
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.02 E-value=3.2e+02 Score=24.24 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 002997 591 QVERSSSTVHTLEMEHSVLKKEMEA 615 (859)
Q Consensus 591 Qlera~a~vr~LE~E~a~lraEmEa 615 (859)
+++..+..+..+|.++..++.+|+.
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777766655
No 291
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=24.88 E-value=2e+02 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh
Q 002997 720 LEAEKEMSKLTEDIGKLESQLSLLK 744 (859)
Q Consensus 720 ~eaE~elqrlkdeIkrLEeELeqLr 744 (859)
..++.+++.++..+..++.++..|=
T Consensus 72 ~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 72 EMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666777776666543
No 292
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=24.78 E-value=5.5e+02 Score=25.88 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002997 582 EFALTNATAQVERSSSTVHTL 602 (859)
Q Consensus 582 E~aL~ka~~Qlera~a~vr~L 602 (859)
..+|.++..++..+...+..+
T Consensus 86 k~si~~s~kef~~~k~~i~kI 106 (199)
T 2ap3_A 86 EDAIKKSEQDFKKAKSHVDNI 106 (199)
T ss_dssp HHHHHHHHHHHTTC-----CC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444444
No 293
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=24.77 E-value=42 Score=31.21 Aligned_cols=91 Identities=14% Similarity=0.264 Sum_probs=55.4
Q ss_pred HHHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHhhhc-----CCCCCCchhhhhhHHHH------HHHH
Q 002997 107 RNVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSALEKV-----KGTNSSRDEMFDNLQQM------VDYT 175 (859)
Q Consensus 107 ~~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l~~~-----~~~~~~~~~~~~~l~~l------~~~s 175 (859)
.++|..|..+||++.++.+||...|. + +.-++.||-.. ++.++. -.+....+ ....
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~--~--------~e~amewL~~h~~L~d~~~d~~---~~e~~l~~~~~~~~~~~~ 75 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGA--N--------IEQILDYLFAHGQLCEKGFDPL---LVEEALEMHQCSEEKMME 75 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCS--C--------HHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCc--C--------HHHHHHHHHHhchhcccCCChh---hhHHHHHhccCCcccccc
Confidence 46889999999999999999999874 2 22334444211 111110 00111111 0111
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHhhcCCccccccc
Q 002997 176 MLEMINVLRDVKTSLSIAEAMWWLLMCDLNISQACTV 212 (859)
Q Consensus 176 L~glv~~l~~~~p~ls~~dAmw~Ll~~d~~~~~A~~~ 212 (859)
...+|+-|.+. .|+...|---|+.++-|+.+|++.
T Consensus 76 ~~~~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlew 110 (118)
T 4ae4_A 76 FLQLMSKFKEM--GFELKDIKEVLLLHNNDQDNALED 110 (118)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22345555554 589999999999999999998763
No 294
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.73 E-value=8e+02 Score=27.79 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002997 660 QKVAVLQQEISKAENRHN 677 (859)
Q Consensus 660 ~kL~~lqqELEeaK~~ve 677 (859)
..|..|+..++.....+.
T Consensus 163 ~~i~~l~~~~~~~~~~i~ 180 (461)
T 3ghg_B 163 TNLRVLRSILENLRSKIQ 180 (461)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333444444444333333
No 295
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.70 E-value=4.7e+02 Score=25.12 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 002997 668 EISKAENRHNQ 678 (859)
Q Consensus 668 ELEeaK~~veq 678 (859)
++.+++..+++
T Consensus 115 ~l~e~e~~lee 125 (152)
T 4fla_A 115 VLSEKEKKLEE 125 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 296
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=24.69 E-value=2.3e+02 Score=24.48 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 636 KALKNAQSLEAQRVLLREELATEKQKVAVLQQEISKAENRH 676 (859)
Q Consensus 636 k~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~v 676 (859)
.++..+...++.|..|+++|..+|.+...+.++|++.-..+
T Consensus 34 ~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~EL 74 (77)
T 3mtu_E 34 QLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 34556888899999999999999999988888887654443
No 297
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=24.08 E-value=6.2e+02 Score=26.25 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=3.8
Q ss_pred HHHHHHHhH
Q 002997 519 PELQNELNS 527 (859)
Q Consensus 519 ~~L~~~~~e 527 (859)
.++++.|+.
T Consensus 45 eEIqkKLeA 53 (240)
T 4f61_I 45 EEIQKKLEA 53 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 298
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=23.49 E-value=7.2e+02 Score=26.80 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=37.5
Q ss_pred CchHHHHHhhcccHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 505 NGKDELILKLVPWVPELQNELNSWTEWANQKVMQAARRLSKDQAELKA 552 (859)
Q Consensus 505 D~k~e~i~~l~~~v~~L~~~~~e~~~wa~~k~~qaA~rL~ke~~eLk~ 552 (859)
+....+..+++.-.+..+.+...|.+=..-++++.+..+..-.+..+.
T Consensus 57 ~~~~~l~~~i~~~~~~ak~hA~~W~d~~~p~Iv~~~~~I~~Y~~~f~s 104 (346)
T 2nrj_A 57 NGYVDLPGRIVQDQKNARAHAVTWDTKVKKQLLDTLNGIVEYDTTFDN 104 (346)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444578888888999999999999998988888888876655554433
No 299
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.27 E-value=1.4e+02 Score=26.06 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 636 KALKNAQSLEAQRVLLREELATEKQKVAVLQQEISK 671 (859)
Q Consensus 636 k~lerLka~EkQ~a~LQeEL~~EK~kL~~lqqELEe 671 (859)
++.+.++.++.+...++.++...+.+...|++++++
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444444443
No 300
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=23.25 E-value=36 Score=37.64 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=34.1
Q ss_pred cCCCccccccccccCcCcE-EeCCCchhhhHHhHH--HH-hhcCCCCCCCcccccc
Q 002997 798 GLKRERECVVCLAEEKSVV-FLPCAHQVLCQKCNE--LH-EKQGMNDCPSCRSPIQ 849 (859)
Q Consensus 798 ~l~~~~~C~ICle~~~~~V-llpCgH~vfC~~Ci~--~~-~~~~~~~CP~CR~~i~ 849 (859)
...-.+.||+-..+...++ ...|.|. -|..-.. .. .....-.||+|...+.
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eeEEeecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 3455688999999877776 4579998 5554432 11 1234468999998763
No 301
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.21 E-value=2.2e+02 Score=24.46 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 644 LEAQRVLLREELATEKQKVAVLQQEISKAENRHNQL 679 (859)
Q Consensus 644 ~EkQ~a~LQeEL~~EK~kL~~lqqELEeaK~~veql 679 (859)
++..+..|+..|+-...-|..|.+.+.+..+++..+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L 47 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARN 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 302
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=23.18 E-value=5.3e+02 Score=25.09 Aligned_cols=10 Identities=20% Similarity=-0.094 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 002997 542 RLSKDQAELK 551 (859)
Q Consensus 542 rL~ke~~eLk 551 (859)
.++.-.++++
T Consensus 15 ~~w~Y~~~l~ 24 (185)
T 3r2p_A 15 LATVYVDVLK 24 (185)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 303
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.27 E-value=4.6e+02 Score=26.58 Aligned_cols=18 Identities=28% Similarity=0.195 Sum_probs=0.0
Q ss_pred hcccHHHHHHHHhHhHHH
Q 002997 514 LVPWVPELQNELNSWTEW 531 (859)
Q Consensus 514 l~~~v~~L~~~~~e~~~w 531 (859)
|+.|...+.+....+|-|
T Consensus 37 LVGr~~~~~K~s~KrK~~ 54 (209)
T 2wvr_A 37 LVGRENELSAGLSKRKHR 54 (209)
T ss_dssp ------------------
T ss_pred ccCCcccccccccccccc
Confidence 566666665555555555
No 304
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.24 E-value=1.9e+02 Score=22.22 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 638 LKNAQSLEAQRVLLREELATEKQKV 662 (859)
Q Consensus 638 lerLka~EkQ~a~LQeEL~~EK~kL 662 (859)
++.+..+-++++..+++|...+.++
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 305
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=22.09 E-value=3.7e+02 Score=33.54 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=11.1
Q ss_pred HhhhhCCCChH------HHHHHhhhcc
Q 002997 111 KQISECGYSED------DATKNIARHS 131 (859)
Q Consensus 111 ~~l~~~g~~~~------~~~~all~ag 131 (859)
..|-..|++++ .++.|||+-|
T Consensus 329 ~A~~~lg~~~~e~~~i~~ilaaILhLG 355 (1010)
T 1g8x_A 329 QAMDIVGFSQEEQMSIFKIIAGILHLG 355 (1010)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 33344466653 2456666666
No 306
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=21.99 E-value=97 Score=25.45 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=31.3
Q ss_pred HHHHHHhhhhCCCChHHHHHHhhhcccccCCCCchhhHHHHHHHHh
Q 002997 106 FRNVIKQISECGYSEDDATKNIARHSIYCGGKDLVSNIVNDTLSAL 151 (859)
Q Consensus 106 y~~Ai~~l~~~g~~~~~~~~all~ag~cyG~~dpvsNIv~nt~~~l 151 (859)
..+|+.-|..+||++..+.++|-...- -++...+..+|-.+|.++
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v~~-~~~~~~~e~lIr~ALk~L 61 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDLLA-QNPKARAQDLIKEALKRL 61 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH-HCTTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHc
Confidence 357999999999999888887765410 033456788877776543
No 307
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=21.99 E-value=7e+02 Score=26.07 Aligned_cols=12 Identities=0% Similarity=-0.069 Sum_probs=7.3
Q ss_pred ccHHHHHHHHhH
Q 002997 516 PWVPELQNELNS 527 (859)
Q Consensus 516 ~~v~~L~~~~~e 527 (859)
..+.-|-..++.
T Consensus 20 ~g~~~l~~r~~~ 31 (337)
T 2x3v_A 20 GNYKRTVKRIDD 31 (337)
T ss_dssp TTTHHHHHHHHH
T ss_pred CChHHHHHHHHH
Confidence 456666666666
No 308
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=21.89 E-value=2.1e+02 Score=27.00 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002997 647 QRVLLREELATEKQK 661 (859)
Q Consensus 647 Q~a~LQeEL~~EK~k 661 (859)
|...++.+|..++++
T Consensus 63 Q~esmeaalkmEr~~ 77 (130)
T 3cl3_D 63 QGQSVEAALRMERQA 77 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 309
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.82 E-value=2e+02 Score=31.10 Aligned_cols=28 Identities=36% Similarity=0.233 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 641 AQSLEAQRVLLREELATEKQKVAVLQQE 668 (859)
Q Consensus 641 Lka~EkQ~a~LQeEL~~EK~kL~~lqqE 668 (859)
+...+.++..|+..|...+.+|.+++++
T Consensus 21 i~~~~~~i~~L~~~l~~~~~~i~~l~~~ 48 (323)
T 1lwu_C 21 GVSHDAQIQELSEMWRVNQQFVTRLQQQ 48 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444444444333
No 310
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.51 E-value=4.6e+02 Score=24.11 Aligned_cols=28 Identities=18% Similarity=0.592 Sum_probs=19.9
Q ss_pred cccccccccCcCc----EEeCCCchhhhHHhHH
Q 002997 803 RECVVCLAEEKSV----VFLPCAHQVLCQKCNE 831 (859)
Q Consensus 803 ~~C~ICle~~~~~----VllpCgH~vfC~~Ci~ 831 (859)
..|.+|...|.-. -=-.||+. ||..|..
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~v-fC~~Cs~ 101 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNI-FCAECSA 101 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCE-ECGGGSC
T ss_pred CCCcCcCCccccccccccCCCCCeE-EChHHhC
Confidence 4788998876521 11269998 9999965
No 311
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.44 E-value=3.9e+02 Score=30.47 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------------HHHHHHHHHHHHHHHHHHH----HHH-HHHHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHSVLKK-------------EMEAANLRAAKSAVSCQEA----FER-EQKAL 638 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a~lra-------------EmEaAKl~~~es~k~lqeI----~ek-Erk~l 638 (859)
++-+++++-+.+..+++..++....+..++..++. .+...............++ .++ -+.+.
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 117 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLS 117 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002997 639 KNAQSLEAQRVLLREELATE 658 (859)
Q Consensus 639 erLka~EkQ~a~LQeEL~~E 658 (859)
++++.++.++..+++++...
T Consensus 118 ~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 118 DQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 312
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.33 E-value=45 Score=29.14 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=20.7
Q ss_pred HHHHHHhhhhCCCChHHHHHHhhhc
Q 002997 106 FRNVIKQISECGYSEDDATKNIARH 130 (859)
Q Consensus 106 y~~Ai~~l~~~g~~~~~~~~all~a 130 (859)
...+|.+|..+||++..+.+||...
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t 53 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLN 53 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3457889999999999999998764
No 313
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=21.16 E-value=9e+02 Score=27.07 Aligned_cols=13 Identities=23% Similarity=0.163 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q 002997 732 DIGKLESQLSLLK 744 (859)
Q Consensus 732 eIkrLEeELeqLr 744 (859)
+|...+..|..|.
T Consensus 250 ~l~~~~~~I~~L~ 262 (450)
T 3r6n_A 250 KILEYKRQVQNLV 262 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 314
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.87 E-value=2.9e+02 Score=30.79 Aligned_cols=31 Identities=3% Similarity=0.101 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002997 577 RLSEMEFALTNATAQVERSSSTVHTLEMEHS 607 (859)
Q Consensus 577 rLsemE~aL~ka~~Qlera~a~vr~LE~E~a 607 (859)
++-++++..+.+..+++..++....+..++.
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444444443
No 315
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=20.48 E-value=1.4e+02 Score=25.07 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002997 587 NATAQVERSSSTVHTLEMEHSVLKKEMEAANLRAAKSAVSCQEAFEREQKA 637 (859)
Q Consensus 587 ka~~Qlera~a~vr~LE~E~a~lraEmEaAKl~~~es~k~lqeI~ekErk~ 637 (859)
..+.++++.++.|++||.|....+=.| -.|+.+..++|+.
T Consensus 30 diEqeLe~Ck~sIrrLE~evn~ErFrm-----------IYLQTlLAkerks 69 (72)
T 1k1f_A 30 DIEQELERAKASIRRLEQEVNQERFRM-----------IYLQTLLAKEKKS 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHhc
Confidence 344566677778899987777665555 2355555555544
Done!