BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002999
(859 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIG 136
F CP++ ++MK+PV++ + Q YER +I+ W D TCP + + L L PN
Sbjct: 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWL-----DAGHKTCPKSQETLLHAGLTPNYV 63
Query: 137 LAGAIEEWVNRN 148
L I W N
Sbjct: 64 LKSLIALWCESN 75
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 76 NFLC-PLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPN 134
++LC ++ ++M+EP + S Y+RK IE +R PVT L +L PN
Sbjct: 4 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFN-----PVTRSPLTQEQLIPN 58
Query: 135 IGLAGAIEEWVNRN 148
+ + I+ +++ N
Sbjct: 59 LAMKEVIDAFISEN 72
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 76 NFLC-PLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPN 134
++LC ++ ++M+EP + S Y+RK IE +R PVT L +L PN
Sbjct: 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFN-----PVTRSPLTQEQLIPN 261
Query: 135 IGLAGAIEEWVNRNVEVQ 152
+ + I+ +++ N V+
Sbjct: 262 LAMKEVIDAFISENGWVE 279
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 63 SELEEDCHILPFKNFLC-PLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPV 121
S+++E ++LC ++ ++M+EP + S Y+RK IE +R PV
Sbjct: 92 SQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFD-----PV 146
Query: 122 TGQVLKSLELKPNIGLAGAIEEWVNRN 148
T L +L PN+ + I+ ++ N
Sbjct: 147 TRSPLTQDQLIPNLAMKEVIDAFIQEN 173
>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|D Chain D, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|E Chain E, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|F Chain F, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 290
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 785 RPGL-LQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAK 832
RPG+ L +RT+W +E H H+ L Q VR L + F+ A K
Sbjct: 231 RPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARK 279
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 215 LRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY 273
L+ +A AL ++A E+ K++++ G + L +S+ +E AV L D
Sbjct: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 193
Query: 274 CKSVASEKGALV-LLSSMTGNLELPALSN----LADEVFKKMERIEEIVQPLAAAGRFEP 328
C+ + GAL+ LL+ + + +L L N L++ K + E +P P
Sbjct: 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPAL------P 247
Query: 329 LINRLCQGSD-NVQIEMAFLVGKLT-LTNSCKEHI--ARQCAKVLVELLSKPAGRA--AS 382
+ RL +D V + + + L+ TN + + A C + LVELL P+ +
Sbjct: 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR-LVELLLHPSPSVLIPA 306
Query: 383 LKALYNLSGLDDNAT-ILVDSALLPALTDILFKSHDASPELKELAAATIANVVSN 436
L+ + N+ DD T ++D LP L +L ++ S +K+ A TI+N+ +
Sbjct: 307 LRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKS--IKKEACWTISNITAG 359
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 215 LRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY 273
L+ +A AL ++A E+ K++++ G + L +S+ +E AV L D
Sbjct: 96 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 155
Query: 274 CKSVASEKGALV-LLSSMTGNLELPALSN----LADEVFKKMERIEEIVQPLAAAGRFEP 328
C+ + GAL+ LL+ + + +L L N L++ K + E +P P
Sbjct: 156 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPAL------P 209
Query: 329 LINRLCQGSD-NVQIEMAFLVGKLT-LTNSCKEHI--ARQCAKVLVELLSKPAGRA--AS 382
+ RL +D V + + + L+ TN + + A C + LVELL P+ +
Sbjct: 210 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR-LVELLLHPSPSVLIPA 268
Query: 383 LKALYNLSGLDDNAT-ILVDSALLPALTDILFKSHDASPELKELAAATIANVVSN 436
L+ + N+ DD T ++D LP L +L ++ S +K+ A TI+N+ +
Sbjct: 269 LRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKS--IKKEACWTISNITAG 321
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 721 CLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDL 780
++ + + LV LL+ + + A+ ALS + ++ + +D GAL A+V L
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 146
Query: 781 FTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFK-HGNANAKRHAQEAL 839
+ +LQE +W L + G+ + ++ ++ +E + H N ++ AQEAL
Sbjct: 147 LSSPNEQILQE-ALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Query: 840 TNLK 843
L+
Sbjct: 205 EKLQ 208
>pdb|3A24|A Chain A, Crystal Structure Of Bt1871 Retaining Glycosidase
pdb|3A24|B Chain B, Crystal Structure Of Bt1871 Retaining Glycosidase
Length = 641
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 73 PFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELK 132
PF N LC M+EP + A+ + W E + DG+ G+ + + K
Sbjct: 518 PF-NMLCDTPSNYMREP----ESTAFIAEIPTVWDESIVLDGK------MGEYIVTARRK 566
Query: 133 PNIGLAGAIEEWVNRNVEVQVS 154
++ G I +W R++EV S
Sbjct: 567 GDVWYVGGITDWSARDIEVDCS 588
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 76 NFLC-PLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPN 134
++LC ++ ++M EP + S Y+RK IE +R PVT L +L PN
Sbjct: 12 DYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFD-----PVTRSPLTQDQLIPN 66
Query: 135 IGLAGAIEEWVNRN 148
+ + I+ ++ N
Sbjct: 67 LAMKEVIDAFIQEN 80
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 741 NVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERV 800
V++ AV+A + + S +F R + E +G + D T P L+ + + ++
Sbjct: 21 QVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEK 80
Query: 801 LRVEGHSHRYSLNQSLVRALVEAFK-HGNANAKRHAQEALTNL 842
++ G + S V AL A + HG+ K AQ+ALT+L
Sbjct: 81 MKASG------FDFSQVLALSGAGQQHGSIYWKAGAQQALTSL 117
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 721 CLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDL 780
++ + + LV LL+ + + A+ ALS + ++ + +D GAL A+V L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 188
Query: 781 FTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFK-HGNANAKRHAQEAL 839
+ +LQE +W L + G+ + ++ ++ +E + H N ++ AQEAL
Sbjct: 189 LSSPNEQILQE-ALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Query: 840 TNLK 843
L+
Sbjct: 247 EKLQ 250
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 721 CLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDL 780
++ + + LV LL+ + + A+ ALS + ++ + +D GAL A+V L
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 146
Query: 781 FTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFK-HGNANAKRHAQEAL 839
+ +LQE +W L + G+ + ++ ++ +E + H N ++ AQEAL
Sbjct: 147 LSSPNEQILQE-ALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Query: 840 TNLK 843
L+
Sbjct: 205 EKLQ 208
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 79 CPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLA 138
CP+ +++KEPV + ++ R I +E CPV LKPN+ +A
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81
Query: 139 GAIE 142
+E
Sbjct: 82 NIVE 85
>pdb|3I04|A Chain A, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|B Chain B, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|C Chain C, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|D Chain D, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 673
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 20/183 (10%)
Query: 245 VIHSLIGNSE-KEKEYAVK---LLLEFCID---EAYCKSV---ASEKG--ALVLLSSMTG 292
+ H+L+ +E K +Y+VK L E C E KSV A E G AL + G
Sbjct: 119 IAHALVEMAEGKAPDYSVKDEAKLKEVCRRVGIEVEGKSVLELAQEVGEKALEDFRRLKG 178
Query: 293 NLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLT 352
E L +E K+ R +V P L+N+ G DN + + F ++
Sbjct: 179 EGEATWLMTTINEGRKEKFRTHNVV-PFGIHASISELVNQAHMGMDNDPVNLVFSAIRVA 237
Query: 353 LTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILVDSALLPALTDIL 412
L + EHIA + +L G + + N+ LD + V P L++I+
Sbjct: 238 LADYTGEHIATDFSDILF-------GTPQPVVSEANMGVLDPDQVNFVLHGHNPLLSEII 290
Query: 413 FKS 415
++
Sbjct: 291 VQA 293
>pdb|1MJG|A Chain A, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|B Chain B, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|C Chain C, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|D Chain D, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1OAO|A Chain A, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|B Chain B, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|A Chain A, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|B Chain B, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|C Chain C, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|D Chain D, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|A Chain A, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|B Chain B, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|C Chain C, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|D Chain D, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 674
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 20/183 (10%)
Query: 245 VIHSLIGNSE-KEKEYAVK---LLLEFCID---EAYCKSV---ASEKG--ALVLLSSMTG 292
+ H+L+ +E K +Y+VK L E C E KSV A E G AL + G
Sbjct: 120 IAHALVEMAEGKAPDYSVKDEAKLKEVCRRVGIEVEGKSVLELAQEVGEKALEDFRRLKG 179
Query: 293 NLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLT 352
E L +E K+ R +V P L+N+ G DN + + F ++
Sbjct: 180 EGEATWLMTTINEGRKEKFRTHNVV-PFGIHASISELVNQAHMGMDNDPVNLVFSAIRVA 238
Query: 353 LTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILVDSALLPALTDIL 412
L + EHIA + +L G + + N+ LD + V P L++I+
Sbjct: 239 LADYTGEHIATDFSDILF-------GTPQPVVSEANMGVLDPDQVNFVLHGHNPLLSEII 291
Query: 413 FKS 415
++
Sbjct: 292 VQA 294
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 95 AQAYERKAIEYWFERCLEDGRD-PTCPVTGQVLKSLEL 131
AQA+E K + YWF+ + D P +GQ L EL
Sbjct: 458 AQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYREL 495
>pdb|2CZL|A Chain A, Crystal Structure Of Mqnd (Ttha1568), A Menaquinone
Biosynthetic Enzyme From Thermus Thermophilus Hb8 (Cys11
Modified With Beta- Mercaptoethanol)
Length = 272
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 781 FTEVRPGLLQ--ERTVWMLERV---LRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHA 835
FT R GL+Q + W ER L + R L + L+RAL EA + A A H
Sbjct: 149 FTYPRYGLVQVVDLGAWWEERTGLPLPLGAILARRDLGEGLIRALDEAVRRSVAYALAHP 208
Query: 836 QEALTNLK 843
+EAL ++
Sbjct: 209 EEALDYMR 216
>pdb|3A3U|A Chain A, Crystal Structure Of Mqnd (Ttha1568), A Menaquinone
Biosynthetic Enzyme From Thermus Thermophilus Hb8
Length = 272
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 781 FTEVRPGLLQ--ERTVWMLERV---LRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHA 835
FT R GL+Q + W ER L + R L + L+RAL EA + A A H
Sbjct: 149 FTYPRYGLVQVVDLGAWWEERTGLPLPLGAILARRDLGEGLIRALDEAVRRSVAYALAHP 208
Query: 836 QEALTNLK 843
+EAL ++
Sbjct: 209 EEALDYMR 216
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 741 NVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERV 800
V++ AV+A + + S +F R + E +G + D T P L + + ++
Sbjct: 21 QVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLXWVQALDIILEK 80
Query: 801 LRVEGHSHRYSLNQSLVRALVEAFK-HGNANAKRHAQEALTNL 842
+ G + S V AL A + HG+ K AQ+ALT+L
Sbjct: 81 XKASG------FDFSQVLALSGAGQQHGSIYWKAGAQQALTSL 117
>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc
Element 2 Homolog (Mms21, S. Cerevisiae)
Length = 94
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 77 FLCPLTKQVMKEPVVLE-SAQAYERKAIEYWFERCLEDGRDPTCPVTG 123
F CP+TK+ MK+PV + YE AI E + + CP G
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIG 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,872,947
Number of Sequences: 62578
Number of extensions: 818637
Number of successful extensions: 2251
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2223
Number of HSP's gapped (non-prelim): 50
length of query: 859
length of database: 14,973,337
effective HSP length: 107
effective length of query: 752
effective length of database: 8,277,491
effective search space: 6224673232
effective search space used: 6224673232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)