Query 002999
Match_columns 859
No_of_seqs 513 out of 3422
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 15:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 8.6E-57 1.9E-61 550.0 60.9 624 152-845 14-765 (2102)
2 PLN03200 cellulose synthase-in 100.0 2.8E-52 6.1E-57 510.5 57.8 619 152-853 59-819 (2102)
3 KOG0166 Karyopherin (importin) 100.0 7.2E-37 1.6E-41 330.3 32.1 407 326-804 68-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 3.8E-36 8.3E-41 298.8 25.8 414 283-805 72-499 (526)
5 KOG4224 Armadillo repeat prote 100.0 2.7E-34 5.8E-39 288.0 24.2 366 195-585 85-456 (550)
6 KOG4224 Armadillo repeat prote 100.0 7E-34 1.5E-38 285.1 22.8 431 130-585 62-504 (550)
7 KOG0166 Karyopherin (importin) 100.0 4.6E-29 1E-33 269.9 35.7 411 284-756 68-487 (514)
8 COG5064 SRP1 Karyopherin (impo 100.0 2.4E-27 5.3E-32 236.2 29.1 412 196-672 72-497 (526)
9 PF05804 KAP: Kinesin-associat 99.9 6.7E-24 1.5E-28 243.1 39.4 474 197-756 125-650 (708)
10 PF05804 KAP: Kinesin-associat 99.9 2.9E-22 6.4E-27 229.7 43.5 514 241-844 124-649 (708)
11 KOG1048 Neural adherens juncti 99.9 8.9E-20 1.9E-24 203.8 27.7 353 241-598 234-665 (717)
12 KOG1048 Neural adherens juncti 99.8 6E-19 1.3E-23 197.2 26.4 398 152-575 234-684 (717)
13 PF04564 U-box: U-box domain; 99.8 6.9E-21 1.5E-25 155.9 4.6 71 74-149 2-72 (73)
14 KOG4199 Uncharacterized conser 99.7 1.2E-15 2.5E-20 153.3 27.3 311 162-489 116-448 (461)
15 KOG2122 Beta-catenin-binding p 99.7 2.7E-16 5.9E-21 181.7 23.8 346 173-529 214-600 (2195)
16 KOG4199 Uncharacterized conser 99.7 2.4E-15 5.1E-20 151.1 25.1 345 174-541 83-453 (461)
17 KOG2122 Beta-catenin-binding p 99.7 1.8E-15 3.9E-20 175.0 23.4 359 199-577 201-603 (2195)
18 KOG4500 Rho/Rac GTPase guanine 99.7 9.3E-14 2E-18 143.9 30.5 395 165-573 99-517 (604)
19 smart00504 Ubox Modified RING 99.6 1.3E-16 2.9E-21 127.9 4.8 63 76-144 1-63 (63)
20 PF10508 Proteasom_PSMB: Prote 99.6 2.3E-12 4.9E-17 147.5 35.6 394 172-591 20-437 (503)
21 KOG4500 Rho/Rac GTPase guanine 99.6 1.2E-12 2.6E-17 135.8 28.2 401 174-598 63-501 (604)
22 KOG1222 Kinesin associated pro 99.5 1.1E-12 2.3E-17 137.6 23.4 381 297-756 277-664 (791)
23 KOG1293 Proteins containing ar 99.5 1.6E-11 3.4E-16 134.7 32.2 495 294-852 20-541 (678)
24 PF10508 Proteasom_PSMB: Prote 99.5 2.3E-11 4.9E-16 139.3 34.4 376 156-554 43-443 (503)
25 PF04826 Arm_2: Armadillo-like 99.5 9.8E-13 2.1E-17 134.9 20.0 192 280-486 10-206 (254)
26 PF04826 Arm_2: Armadillo-like 99.5 2.3E-12 4.9E-17 132.2 20.8 198 192-438 9-208 (254)
27 KOG2171 Karyopherin (importin) 99.5 7.4E-10 1.6E-14 129.3 43.1 541 152-845 5-595 (1075)
28 KOG1222 Kinesin associated pro 99.5 1.9E-11 4.2E-16 128.3 26.7 361 155-542 308-674 (791)
29 PRK09687 putative lyase; Provi 99.4 1.2E-10 2.7E-15 122.4 25.0 252 196-526 24-278 (280)
30 PRK13800 putative oxidoreducta 99.4 1.1E-10 2.5E-15 143.1 27.6 278 401-841 619-896 (897)
31 KOG1293 Proteins containing ar 99.3 4.7E-10 1E-14 123.3 27.5 477 168-674 25-536 (678)
32 PF01602 Adaptin_N: Adaptin N 99.3 5.9E-09 1.3E-13 122.2 38.8 494 172-800 25-522 (526)
33 PRK09687 putative lyase; Provi 99.3 2.7E-10 5.8E-15 119.9 24.3 251 241-571 24-278 (280)
34 PRK13800 putative oxidoreducta 99.3 4.5E-10 9.7E-15 137.9 28.9 275 194-572 620-896 (897)
35 PF01602 Adaptin_N: Adaptin N 99.3 1.5E-08 3.4E-13 118.6 36.4 471 244-845 8-484 (526)
36 KOG2171 Karyopherin (importin) 99.2 3.6E-08 7.9E-13 115.5 35.2 485 284-853 6-515 (1075)
37 KOG2023 Nuclear transport rece 99.2 9.1E-08 2E-12 105.1 33.3 570 195-845 128-818 (885)
38 PTZ00429 beta-adaptin; Provisi 99.2 5.6E-07 1.2E-11 106.0 42.0 365 239-672 31-398 (746)
39 COG5113 UFD2 Ubiquitin fusion 99.1 5.9E-11 1.3E-15 128.0 7.3 122 15-148 799-921 (929)
40 KOG2042 Ubiquitin fusion degra 99.1 4.3E-11 9.4E-16 138.5 5.1 128 13-149 806-938 (943)
41 KOG0168 Putative ubiquitin fus 99.1 3.5E-08 7.5E-13 111.1 25.0 262 244-557 171-439 (1051)
42 cd00020 ARM Armadillo/beta-cat 99.1 2E-09 4.3E-14 98.7 13.0 118 190-312 2-120 (120)
43 PTZ00429 beta-adaptin; Provisi 99.0 7.3E-06 1.6E-10 96.8 43.5 506 153-802 34-545 (746)
44 KOG4642 Chaperone-dependent E3 99.0 1.7E-10 3.6E-15 111.8 4.0 74 69-149 206-279 (284)
45 cd00020 ARM Armadillo/beta-cat 99.0 5.4E-09 1.2E-13 95.8 13.1 116 235-352 2-119 (120)
46 KOG0168 Putative ubiquitin fus 99.0 1.6E-07 3.4E-12 106.0 26.6 394 152-557 168-656 (1051)
47 PLN03208 E3 ubiquitin-protein 99.0 4.7E-10 1E-14 106.9 5.2 68 70-137 12-89 (193)
48 KOG0946 ER-Golgi vesicle-tethe 98.9 6.4E-06 1.4E-10 92.7 36.0 327 152-487 23-401 (970)
49 cd00256 VATPase_H VATPase_H, r 98.9 3.9E-07 8.5E-12 99.8 26.4 326 195-529 53-424 (429)
50 cd00256 VATPase_H VATPase_H, r 98.9 1.1E-06 2.3E-11 96.4 27.8 347 366-802 55-425 (429)
51 PF15227 zf-C3HC4_4: zinc fing 98.9 8.8E-10 1.9E-14 79.0 2.4 42 79-122 1-42 (42)
52 KOG0946 ER-Golgi vesicle-tethe 98.8 5.5E-05 1.2E-09 85.4 39.4 327 240-580 22-404 (970)
53 PF11789 zf-Nse: Zinc-finger o 98.8 1.2E-09 2.7E-14 83.5 1.5 45 75-123 10-55 (57)
54 TIGR00599 rad18 DNA repair pro 98.8 5.4E-09 1.2E-13 112.4 5.5 68 75-148 25-92 (397)
55 PF03224 V-ATPase_H_N: V-ATPas 98.7 2.4E-07 5.2E-12 100.1 16.9 225 196-426 56-305 (312)
56 KOG2023 Nuclear transport rece 98.7 5.4E-06 1.2E-10 91.6 26.8 311 239-575 127-505 (885)
57 PF05536 Neurochondrin: Neuroc 98.7 5.1E-05 1.1E-09 87.4 34.4 413 197-628 7-494 (543)
58 PF03224 V-ATPase_H_N: V-ATPas 98.7 8.9E-07 1.9E-11 95.7 18.1 219 158-381 62-304 (312)
59 PF13445 zf-RING_UBOX: RING-ty 98.5 6.5E-08 1.4E-12 69.1 2.2 39 79-120 1-43 (43)
60 PF13923 zf-C3HC4_2: Zinc fing 98.5 9.6E-08 2.1E-12 67.8 2.6 38 79-122 1-39 (39)
61 KOG2759 Vacuolar H+-ATPase V1 98.5 7.4E-05 1.6E-09 79.2 24.8 326 196-529 66-437 (442)
62 KOG1241 Karyopherin (importin) 98.5 0.00094 2E-08 75.7 34.6 344 200-575 95-477 (859)
63 KOG4413 26S proteasome regulat 98.4 0.00017 3.7E-09 73.5 26.2 325 173-507 102-458 (524)
64 KOG2759 Vacuolar H+-ATPase V1 98.4 8.8E-05 1.9E-09 78.7 24.9 348 366-802 67-438 (442)
65 KOG2160 Armadillo/beta-catenin 98.4 8.6E-06 1.9E-10 85.2 16.8 184 294-486 94-283 (342)
66 KOG1789 Endocytosis protein RM 98.4 0.00031 6.8E-09 81.2 29.5 361 168-557 1740-2143(2235)
67 KOG1824 TATA-binding protein-i 98.4 0.004 8.8E-08 72.2 37.2 447 156-677 573-1042(1233)
68 KOG2160 Armadillo/beta-catenin 98.4 3.5E-05 7.6E-10 80.7 19.4 179 214-392 98-283 (342)
69 KOG0287 Postreplication repair 98.3 2.1E-07 4.6E-12 93.8 2.9 67 76-148 23-89 (442)
70 KOG1062 Vesicle coat complex A 98.3 0.00034 7.4E-09 79.7 27.5 281 202-535 114-419 (866)
71 TIGR02270 conserved hypothetic 98.3 0.00014 3.1E-09 80.4 24.5 239 195-529 54-295 (410)
72 KOG0213 Splicing factor 3b, su 98.3 0.0046 9.9E-08 69.8 35.2 257 370-672 805-1066(1172)
73 KOG1060 Vesicle coat complex A 98.3 0.001 2.2E-08 75.6 29.6 462 243-840 38-529 (968)
74 KOG3678 SARM protein (with ste 98.3 3.9E-05 8.3E-10 81.5 17.5 222 317-567 173-400 (832)
75 TIGR02270 conserved hypothetic 98.3 0.00019 4.2E-09 79.4 23.7 123 403-575 54-176 (410)
76 KOG1789 Endocytosis protein RM 98.3 0.00031 6.8E-09 81.2 25.3 341 256-653 1741-2142(2235)
77 KOG1824 TATA-binding protein-i 98.2 0.0019 4.1E-08 74.8 31.4 360 172-579 497-890 (1233)
78 KOG3678 SARM protein (with ste 98.2 6.2E-05 1.3E-09 79.9 18.1 268 233-530 173-452 (832)
79 PF13920 zf-C3HC4_3: Zinc fing 98.2 8.1E-07 1.8E-11 67.0 2.9 47 75-127 1-48 (50)
80 KOG1059 Vesicle coat complex A 98.2 0.0021 4.7E-08 72.4 30.3 325 198-575 147-490 (877)
81 PF05536 Neurochondrin: Neuroc 98.2 0.0013 2.8E-08 75.9 30.1 242 283-534 6-265 (543)
82 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00083 1.8E-08 73.6 27.1 255 177-485 7-269 (371)
83 KOG2973 Uncharacterized conser 98.2 0.00045 9.8E-09 70.4 22.6 283 199-528 7-313 (353)
84 KOG1241 Karyopherin (importin) 98.2 0.0017 3.7E-08 73.7 28.2 359 375-844 103-477 (859)
85 PF00097 zf-C3HC4: Zinc finger 98.2 1.7E-06 3.7E-11 62.3 3.2 40 79-122 1-41 (41)
86 KOG0213 Splicing factor 3b, su 98.1 0.012 2.5E-07 66.7 33.9 487 199-844 553-1065(1172)
87 KOG0823 Predicted E3 ubiquitin 98.1 1.3E-06 2.8E-11 85.0 2.9 59 75-136 46-104 (230)
88 COG5432 RAD18 RING-finger-cont 98.1 1.6E-06 3.5E-11 85.6 3.1 66 77-148 26-91 (391)
89 PF14835 zf-RING_6: zf-RING of 98.1 5.8E-07 1.3E-11 68.6 -0.0 57 77-141 8-65 (65)
90 PHA02929 N1R/p28-like protein; 98.1 2.1E-06 4.5E-11 86.2 3.7 47 75-127 173-227 (238)
91 KOG1062 Vesicle coat complex A 98.1 0.047 1E-06 62.9 39.9 443 244-801 111-579 (866)
92 PF13639 zf-RING_2: Ring finge 98.0 2.6E-06 5.7E-11 62.2 2.1 40 78-123 2-44 (44)
93 KOG0212 Uncharacterized conser 98.0 0.00054 1.2E-08 75.0 20.0 407 137-575 24-444 (675)
94 KOG2973 Uncharacterized conser 98.0 0.001 2.2E-08 67.9 20.7 265 242-558 5-298 (353)
95 KOG4646 Uncharacterized conser 97.9 4.9E-05 1.1E-09 67.6 8.5 124 403-542 16-139 (173)
96 KOG0320 Predicted E3 ubiquitin 97.9 1.1E-05 2.5E-10 74.7 3.7 52 76-133 131-184 (187)
97 PHA02926 zinc finger-like prot 97.9 1.3E-05 2.9E-10 77.2 4.1 53 75-127 169-230 (242)
98 PF00514 Arm: Armadillo/beta-c 97.8 2.9E-05 6.3E-10 55.8 4.9 40 630-670 1-40 (41)
99 PF10165 Ric8: Guanine nucleot 97.8 0.0021 4.5E-08 72.7 21.8 267 260-530 1-337 (446)
100 KOG1242 Protein containing ada 97.8 0.0089 1.9E-07 67.1 25.9 365 283-783 97-464 (569)
101 KOG1059 Vesicle coat complex A 97.8 0.02 4.3E-07 64.9 28.2 214 242-529 146-364 (877)
102 KOG4646 Uncharacterized conser 97.8 0.0002 4.2E-09 63.9 10.1 122 195-322 16-139 (173)
103 KOG0289 mRNA splicing factor [ 97.8 3.6E-05 7.8E-10 81.0 6.0 51 77-133 1-52 (506)
104 KOG0317 Predicted E3 ubiquitin 97.8 1.7E-05 3.7E-10 79.6 3.4 51 75-131 238-288 (293)
105 PF00514 Arm: Armadillo/beta-c 97.7 2.7E-05 5.8E-10 55.9 3.1 39 314-352 2-40 (41)
106 COG1413 FOG: HEAT repeat [Ener 97.7 0.0096 2.1E-07 65.3 24.7 247 195-529 43-303 (335)
107 KOG4413 26S proteasome regulat 97.7 0.017 3.6E-07 59.5 23.6 323 214-551 97-459 (524)
108 COG5215 KAP95 Karyopherin (imp 97.7 0.095 2.1E-06 58.0 30.3 298 214-533 149-482 (858)
109 KOG2177 Predicted E3 ubiquitin 97.7 2.8E-05 6.1E-10 85.5 3.7 67 75-149 12-78 (386)
110 COG1413 FOG: HEAT repeat [Ener 97.6 0.018 4E-07 63.1 25.6 247 240-575 43-304 (335)
111 KOG1061 Vesicle coat complex A 97.6 0.018 4E-07 66.1 25.0 280 239-558 12-294 (734)
112 PF13646 HEAT_2: HEAT repeats; 97.6 0.00019 4E-09 61.6 7.1 87 643-798 1-88 (88)
113 KOG2734 Uncharacterized conser 97.6 0.018 3.9E-07 61.7 22.8 260 216-486 101-401 (536)
114 cd00162 RING RING-finger (Real 97.6 8E-05 1.7E-09 54.5 3.9 43 78-125 1-44 (45)
115 KOG1242 Protein containing ada 97.5 0.031 6.8E-07 62.9 24.2 354 196-598 97-464 (569)
116 KOG0212 Uncharacterized conser 97.5 0.011 2.4E-07 65.2 19.7 289 173-485 144-444 (675)
117 smart00184 RING Ring finger. E 97.5 0.00015 3.3E-09 51.0 4.0 39 79-122 1-39 (39)
118 KOG2259 Uncharacterized conser 97.5 0.014 3.1E-07 65.4 20.6 295 242-580 200-516 (823)
119 KOG1060 Vesicle coat complex A 97.4 0.087 1.9E-06 60.6 27.0 291 458-844 110-458 (968)
120 PF13646 HEAT_2: HEAT repeats; 97.4 0.00035 7.6E-09 59.8 6.8 86 728-840 1-88 (88)
121 PF10165 Ric8: Guanine nucleot 97.4 0.0083 1.8E-07 67.9 19.2 284 175-487 3-339 (446)
122 COG5181 HSH155 U2 snRNP splice 97.4 0.043 9.3E-07 61.1 23.4 260 367-672 607-871 (975)
123 KOG1077 Vesicle coat complex A 97.3 0.064 1.4E-06 60.8 23.8 306 458-843 113-432 (938)
124 KOG2734 Uncharacterized conser 97.3 0.042 9E-07 59.1 21.3 257 173-435 104-400 (536)
125 PF14664 RICTOR_N: Rapamycin-i 97.3 0.037 8E-07 60.8 21.8 314 326-671 27-364 (371)
126 COG5215 KAP95 Karyopherin (imp 97.3 0.48 1E-05 52.7 40.5 342 199-578 98-482 (858)
127 TIGR00570 cdk7 CDK-activating 97.2 0.00039 8.4E-09 72.1 5.1 50 76-130 3-57 (309)
128 COG5222 Uncharacterized conser 97.2 0.00059 1.3E-08 68.1 6.0 68 76-148 274-343 (427)
129 COG5369 Uncharacterized conser 97.2 0.0041 9E-08 67.9 12.6 194 218-412 408-617 (743)
130 PF14634 zf-RING_5: zinc-RING 97.2 0.00032 6.9E-09 51.1 2.9 40 79-124 2-44 (44)
131 COG5240 SEC21 Vesicle coat com 97.2 0.35 7.6E-06 53.8 27.0 454 283-843 66-554 (898)
132 KOG1517 Guanine nucleotide bin 97.2 0.019 4.1E-07 67.6 18.2 250 139-396 455-737 (1387)
133 KOG0311 Predicted E3 ubiquitin 97.0 0.0002 4.4E-09 73.8 0.9 64 76-144 43-108 (381)
134 COG5574 PEX10 RING-finger-cont 97.0 0.00044 9.6E-09 68.8 2.9 48 74-126 213-261 (271)
135 KOG1517 Guanine nucleotide bin 97.0 0.027 5.9E-07 66.3 17.6 164 497-756 508-672 (1387)
136 COG5231 VMA13 Vacuolar H+-ATPa 96.9 0.029 6.2E-07 57.7 15.1 251 214-484 164-427 (432)
137 KOG1077 Vesicle coat complex A 96.9 0.18 3.9E-06 57.4 22.5 346 158-544 118-500 (938)
138 PF12678 zf-rbx1: RING-H2 zinc 96.9 0.00077 1.7E-08 55.1 2.9 39 79-123 22-73 (73)
139 KOG2164 Predicted E3 ubiquitin 96.9 0.00066 1.4E-08 73.9 3.2 58 76-134 186-243 (513)
140 COG5181 HSH155 U2 snRNP splice 96.8 0.068 1.5E-06 59.6 18.1 256 283-576 605-871 (975)
141 KOG0297 TNF receptor-associate 96.8 0.00075 1.6E-08 74.5 3.3 70 72-147 17-88 (391)
142 smart00185 ARM Armadillo/beta- 96.8 0.0022 4.9E-08 45.7 4.7 39 314-352 2-40 (41)
143 smart00185 ARM Armadillo/beta- 96.7 0.0029 6.3E-08 45.1 4.8 38 632-670 3-40 (41)
144 PF12348 CLASP_N: CLASP N term 96.7 0.018 3.9E-07 59.2 12.6 170 172-352 26-205 (228)
145 KOG2660 Locus-specific chromos 96.7 0.00077 1.7E-08 69.4 2.2 62 76-143 15-81 (331)
146 KOG1061 Vesicle coat complex A 96.7 0.049 1.1E-06 62.7 16.2 325 196-575 122-453 (734)
147 KOG0211 Protein phosphatase 2A 96.6 1.9 4.2E-05 51.4 29.6 543 196-849 122-669 (759)
148 KOG4159 Predicted E3 ubiquitin 96.6 0.0013 2.7E-08 71.6 3.0 68 75-148 83-155 (398)
149 KOG2979 Protein involved in DN 96.6 0.0012 2.6E-08 65.6 2.6 65 76-144 176-245 (262)
150 COG5369 Uncharacterized conser 96.6 0.032 7E-07 61.2 13.4 186 379-580 406-599 (743)
151 KOG1078 Vesicle coat complex C 96.6 2.3 5E-05 49.5 28.9 282 367-755 248-532 (865)
152 KOG1813 Predicted E3 ubiquitin 96.5 0.0013 2.9E-08 66.4 2.2 50 67-126 236-285 (313)
153 KOG1058 Vesicle coat complex C 96.5 0.19 4.2E-06 57.5 18.9 320 202-595 106-488 (948)
154 KOG0211 Protein phosphatase 2A 96.5 1.1 2.5E-05 53.3 26.2 481 214-801 174-663 (759)
155 KOG2259 Uncharacterized conser 96.5 0.14 3.1E-06 57.8 17.5 266 282-579 198-479 (823)
156 COG5240 SEC21 Vesicle coat com 96.5 0.71 1.5E-05 51.5 22.5 324 174-553 248-578 (898)
157 PF12348 CLASP_N: CLASP N term 96.4 0.059 1.3E-06 55.4 14.1 173 214-392 22-207 (228)
158 KOG3036 Protein involved in ce 96.4 0.29 6.2E-06 48.9 17.2 154 168-322 94-257 (293)
159 KOG4535 HEAT and armadillo rep 96.3 0.54 1.2E-05 51.3 20.2 115 738-853 496-612 (728)
160 KOG1002 Nucleotide excision re 96.3 0.0024 5.3E-08 68.9 2.6 58 75-133 535-592 (791)
161 KOG3039 Uncharacterized conser 96.2 0.0028 6.2E-08 61.9 2.6 53 75-133 220-276 (303)
162 KOG1240 Protein kinase contain 96.2 0.27 5.8E-06 59.4 19.0 263 242-530 424-725 (1431)
163 KOG0978 E3 ubiquitin ligase in 96.2 0.0026 5.7E-08 73.0 2.4 52 77-133 644-695 (698)
164 PF11841 DUF3361: Domain of un 96.2 0.2 4.3E-06 47.3 14.3 129 397-538 5-139 (160)
165 PRK14707 hypothetical protein; 96.2 6.9 0.00015 50.8 43.2 603 156-852 168-790 (2710)
166 PF12861 zf-Apc11: Anaphase-pr 96.1 0.0074 1.6E-07 49.8 3.9 48 77-127 33-82 (85)
167 PF04641 Rtf2: Rtf2 RING-finge 96.0 0.0045 9.8E-08 64.6 3.0 52 75-133 112-167 (260)
168 KOG3113 Uncharacterized conser 96.0 0.0073 1.6E-07 59.4 4.1 49 76-132 111-163 (293)
169 KOG1943 Beta-tubulin folding c 96.0 5.7 0.00012 48.2 42.5 431 190-672 230-706 (1133)
170 PF09759 Atx10homo_assoc: Spin 96.0 0.017 3.6E-07 50.2 5.8 64 173-238 6-70 (102)
171 PF13513 HEAT_EZ: HEAT-like re 95.9 0.0082 1.8E-07 46.1 3.5 55 515-573 1-55 (55)
172 PF09759 Atx10homo_assoc: Spin 95.9 0.036 7.9E-07 48.1 7.6 66 472-541 2-69 (102)
173 KOG0915 Uncharacterized conser 95.8 5.5 0.00012 50.0 27.8 431 215-675 973-1431(1702)
174 KOG0567 HEAT repeat-containing 95.8 1.5 3.3E-05 44.6 19.5 254 197-529 5-279 (289)
175 PF13513 HEAT_EZ: HEAT-like re 95.7 0.016 3.4E-07 44.5 4.1 55 297-351 1-55 (55)
176 KOG4692 Predicted E3 ubiquitin 95.6 0.014 3.1E-07 60.0 4.6 52 70-127 416-467 (489)
177 KOG1240 Protein kinase contain 95.5 0.53 1.1E-05 57.0 17.5 296 405-802 424-725 (1431)
178 PF12460 MMS19_C: RNAPII trans 95.5 4.7 0.0001 45.5 25.1 345 242-628 1-395 (415)
179 COG5152 Uncharacterized conser 95.4 0.0078 1.7E-07 56.8 1.9 44 77-126 197-240 (259)
180 KOG3039 Uncharacterized conser 95.4 0.0083 1.8E-07 58.7 1.9 33 77-109 44-76 (303)
181 KOG0802 E3 ubiquitin ligase [P 95.4 0.008 1.7E-07 69.9 2.2 44 76-125 291-339 (543)
182 KOG0567 HEAT repeat-containing 95.4 2.7 5.8E-05 42.8 19.3 87 326-434 38-128 (289)
183 KOG3036 Protein involved in ce 95.3 1.2 2.5E-05 44.7 16.3 146 255-401 94-257 (293)
184 PF07814 WAPL: Wings apart-lik 95.3 1.1 2.4E-05 49.3 18.5 286 140-438 6-358 (361)
185 KOG4628 Predicted E3 ubiquitin 95.3 0.011 2.5E-07 62.5 2.7 46 77-127 230-278 (348)
186 PF12755 Vac14_Fab1_bd: Vacuol 95.2 0.13 2.7E-06 44.7 8.7 68 502-574 28-95 (97)
187 PF11841 DUF3361: Domain of un 95.1 0.29 6.3E-06 46.2 11.2 120 190-311 6-130 (160)
188 PF13764 E3_UbLigase_R4: E3 ub 95.0 2.7 5.8E-05 50.6 21.6 184 364-557 117-332 (802)
189 KOG1943 Beta-tubulin folding c 94.9 12 0.00027 45.5 27.5 255 239-528 340-609 (1133)
190 KOG0824 Predicted E3 ubiquitin 94.9 0.018 4E-07 58.5 3.0 49 76-129 7-55 (324)
191 COG5231 VMA13 Vacuolar H+-ATPa 94.9 1.7 3.7E-05 45.2 16.6 231 295-529 161-427 (432)
192 KOG1058 Vesicle coat complex C 94.8 2.3 5E-05 49.2 19.2 232 294-575 110-346 (948)
193 PF02985 HEAT: HEAT repeat; I 94.7 0.041 9E-07 36.5 3.4 30 642-672 1-30 (31)
194 PF12755 Vac14_Fab1_bd: Vacuol 94.7 0.094 2E-06 45.5 6.4 70 726-802 27-96 (97)
195 COG5096 Vesicle coat complex, 94.6 13 0.00029 44.3 27.3 166 249-436 28-196 (757)
196 PF05004 IFRD: Interferon-rela 94.6 1.8 3.8E-05 46.6 17.2 207 458-673 45-259 (309)
197 PF08569 Mo25: Mo25-like; Int 94.5 5.6 0.00012 43.1 20.8 214 318-541 70-296 (335)
198 PF11698 V-ATPase_H_C: V-ATPas 94.5 0.1 2.2E-06 46.6 6.2 72 726-802 43-115 (119)
199 KOG4151 Myosin assembly protei 94.4 0.24 5.3E-06 57.5 10.6 224 312-553 492-721 (748)
200 KOG2817 Predicted E3 ubiquitin 94.4 0.026 5.6E-07 60.0 2.6 42 77-122 335-380 (394)
201 KOG4535 HEAT and armadillo rep 94.4 0.62 1.3E-05 50.8 12.8 301 166-486 269-604 (728)
202 PF04078 Rcd1: Cell differenti 94.4 1.7 3.8E-05 44.4 15.4 181 474-669 68-260 (262)
203 KOG0826 Predicted E3 ubiquitin 94.4 0.019 4.2E-07 59.0 1.6 47 75-127 299-346 (357)
204 KOG4367 Predicted Zn-finger pr 94.3 0.019 4E-07 60.7 1.5 34 75-108 3-36 (699)
205 KOG2879 Predicted E3 ubiquitin 94.3 0.029 6.3E-07 56.3 2.7 49 75-127 238-287 (298)
206 PF04063 DUF383: Domain of unk 94.3 0.23 5E-06 49.0 9.0 109 253-361 8-140 (192)
207 PRK14707 hypothetical protein; 94.2 26 0.00057 45.9 44.2 389 158-575 128-530 (2710)
208 PF04078 Rcd1: Cell differenti 94.0 0.92 2E-05 46.4 12.6 154 168-322 65-228 (262)
209 PF13764 E3_UbLigase_R4: E3 ub 93.9 8.4 0.00018 46.5 22.3 242 190-436 112-407 (802)
210 PF08045 CDC14: Cell division 93.8 0.41 8.8E-06 49.2 9.7 94 172-269 110-207 (257)
211 KOG1788 Uncharacterized conser 93.7 14 0.00031 44.4 22.7 470 294-853 478-991 (2799)
212 PF12460 MMS19_C: RNAPII trans 93.5 16 0.00035 41.2 31.3 352 198-579 2-398 (415)
213 PF05004 IFRD: Interferon-rela 93.2 4.1 8.9E-05 43.8 16.9 181 295-483 55-255 (309)
214 COG5540 RING-finger-containing 93.2 0.06 1.3E-06 54.7 2.6 46 77-127 324-372 (374)
215 COG5243 HRD1 HRD ubiquitin lig 93.1 0.081 1.8E-06 55.2 3.4 46 75-126 286-344 (491)
216 PF02985 HEAT: HEAT repeat; I 93.0 0.13 2.9E-06 34.0 3.2 28 728-755 2-29 (31)
217 PF02891 zf-MIZ: MIZ/SP-RING z 92.9 0.1 2.2E-06 39.0 2.9 45 77-125 3-50 (50)
218 COG5096 Vesicle coat complex, 92.9 3.4 7.3E-05 49.1 16.6 164 333-529 28-194 (757)
219 KOG0804 Cytoplasmic Zn-finger 92.9 0.035 7.7E-07 59.5 0.5 41 77-125 176-220 (493)
220 KOG1734 Predicted RING-contain 92.7 0.039 8.5E-07 55.0 0.6 58 73-134 221-288 (328)
221 KOG1248 Uncharacterized conser 92.5 34 0.00075 42.3 26.8 233 293-542 664-910 (1176)
222 KOG1832 HIV-1 Vpr-binding prot 92.4 3.8 8.2E-05 48.2 15.7 322 253-580 366-778 (1516)
223 PF08569 Mo25: Mo25-like; Int 92.3 10 0.00022 41.1 18.3 197 190-394 71-286 (335)
224 PF06025 DUF913: Domain of Unk 92.3 9.7 0.00021 42.1 18.6 100 236-335 101-207 (379)
225 KOG0883 Cyclophilin type, U bo 92.1 0.094 2E-06 55.0 2.5 51 77-133 41-91 (518)
226 KOG2611 Neurochondrin/leucine- 92.0 4.8 0.0001 44.3 15.0 127 200-333 16-161 (698)
227 PF12717 Cnd1: non-SMC mitotic 91.9 6.2 0.00014 38.6 15.0 106 214-334 3-111 (178)
228 KOG4151 Myosin assembly protei 91.8 2.1 4.6E-05 50.0 13.0 198 229-435 493-699 (748)
229 PF11698 V-ATPase_H_C: V-ATPas 91.7 0.26 5.7E-06 44.0 4.4 71 282-352 43-114 (119)
230 PF04063 DUF383: Domain of unk 91.6 0.89 1.9E-05 44.9 8.6 133 419-557 8-160 (192)
231 PF12717 Cnd1: non-SMC mitotic 91.1 1.1 2.4E-05 44.0 8.8 90 420-530 2-92 (178)
232 COG5109 Uncharacterized conser 90.7 0.13 2.9E-06 52.4 1.9 42 77-122 337-382 (396)
233 PF11701 UNC45-central: Myosin 90.6 1.1 2.4E-05 42.9 7.9 143 241-388 4-156 (157)
234 KOG2025 Chromosome condensatio 90.3 5.3 0.00011 46.2 13.9 114 197-322 87-200 (892)
235 PF12719 Cnd3: Nuclear condens 90.2 29 0.00062 37.2 19.6 167 240-414 26-208 (298)
236 PF07814 WAPL: Wings apart-lik 89.9 17 0.00037 40.1 17.7 237 242-487 23-301 (361)
237 COG5194 APC11 Component of SCF 89.7 0.4 8.8E-06 38.5 3.4 43 78-126 33-80 (88)
238 KOG1967 DNA repair/transcripti 88.8 7.3 0.00016 46.5 13.9 149 323-479 866-1018(1030)
239 KOG1832 HIV-1 Vpr-binding prot 88.6 12 0.00025 44.5 15.1 127 362-488 599-776 (1516)
240 smart00744 RINGv The RING-vari 88.5 0.71 1.5E-05 34.3 3.8 41 79-123 2-49 (49)
241 PF06025 DUF913: Domain of Unk 88.2 44 0.00095 37.1 19.3 123 475-599 79-208 (379)
242 KOG2274 Predicted importin 9 [ 87.9 67 0.0015 38.7 20.8 217 214-438 465-692 (1005)
243 PF08045 CDC14: Cell division 87.9 3.9 8.5E-05 42.1 10.1 96 256-351 107-205 (257)
244 KOG1248 Uncharacterized conser 87.5 18 0.00038 44.7 16.4 210 214-435 669-898 (1176)
245 PF11701 UNC45-central: Myosin 87.4 5.5 0.00012 38.1 10.3 95 214-310 58-157 (157)
246 KOG2062 26S proteasome regulat 87.3 19 0.00041 42.1 15.6 133 639-842 517-651 (929)
247 PF08506 Cse1: Cse1; InterPro 87.2 16 0.00036 40.2 15.2 169 348-525 194-370 (370)
248 KOG2611 Neurochondrin/leucine- 87.2 49 0.0011 36.9 17.9 151 287-441 16-188 (698)
249 KOG0915 Uncharacterized conser 87.1 1E+02 0.0022 39.6 29.8 320 214-557 1013-1368(1702)
250 COG5627 MMS21 DNA repair prote 86.8 0.57 1.2E-05 46.0 3.1 68 76-147 189-261 (275)
251 PF12031 DUF3518: Domain of un 86.8 1.4 3E-05 44.3 5.9 79 214-292 139-226 (257)
252 PF05918 API5: Apoptosis inhib 86.5 3.5 7.5E-05 47.4 9.6 128 654-846 34-165 (556)
253 KOG0414 Chromosome condensatio 86.4 7.1 0.00015 47.8 12.3 135 367-529 922-1063(1251)
254 KOG2999 Regulator of Rac1, req 86.2 12 0.00026 42.1 13.0 151 197-352 85-241 (713)
255 KOG2025 Chromosome condensatio 86.2 40 0.00086 39.4 17.3 180 281-483 84-292 (892)
256 PF12719 Cnd3: Nuclear condens 86.0 53 0.0011 35.1 20.1 168 324-514 26-210 (298)
257 KOG3665 ZYG-1-like serine/thre 85.4 95 0.002 37.5 22.1 176 385-594 494-674 (699)
258 KOG0396 Uncharacterized conser 85.4 0.35 7.7E-06 51.0 1.0 48 77-129 331-381 (389)
259 KOG1991 Nuclear transport rece 85.2 1E+02 0.0022 37.7 33.7 416 130-580 13-537 (1010)
260 KOG1991 Nuclear transport rece 85.2 1E+02 0.0022 37.7 28.1 138 195-335 410-558 (1010)
261 KOG2062 26S proteasome regulat 85.0 89 0.0019 36.9 19.6 124 324-472 554-681 (929)
262 KOG1992 Nuclear export recepto 84.9 95 0.0021 37.2 24.2 360 283-675 289-672 (960)
263 KOG2999 Regulator of Rac1, req 84.8 21 0.00045 40.4 13.9 155 375-542 96-254 (713)
264 KOG1078 Vesicle coat complex C 84.7 95 0.0021 36.9 29.4 54 785-843 478-531 (865)
265 COG5209 RCD1 Uncharacterized p 84.6 6.3 0.00014 39.0 9.0 108 471-584 115-227 (315)
266 KOG1785 Tyrosine kinase negati 84.6 0.55 1.2E-05 49.6 2.0 48 78-129 371-418 (563)
267 PF06371 Drf_GBD: Diaphanous G 84.6 15 0.00032 36.1 12.3 81 396-484 100-186 (187)
268 PF12031 DUF3518: Domain of un 83.9 2.5 5.5E-05 42.5 6.1 83 255-337 139-229 (257)
269 KOG2032 Uncharacterized conser 83.7 34 0.00073 38.3 14.9 143 193-340 252-403 (533)
270 KOG1645 RING-finger-containing 83.7 0.5 1.1E-05 50.4 1.2 58 77-138 5-67 (463)
271 smart00638 LPD_N Lipoprotein N 83.3 56 0.0012 38.7 18.5 204 197-431 313-541 (574)
272 PF08324 PUL: PUL domain; Int 82.0 12 0.00026 39.4 11.0 127 197-323 108-242 (268)
273 PF06371 Drf_GBD: Diaphanous G 81.9 6.1 0.00013 38.9 8.3 77 234-311 101-186 (187)
274 KOG1493 Anaphase-promoting com 81.2 0.72 1.6E-05 36.8 1.0 47 77-126 32-80 (84)
275 COG5209 RCD1 Uncharacterized p 81.1 9.2 0.0002 37.9 8.6 151 167-318 114-274 (315)
276 KOG1967 DNA repair/transcripti 80.8 14 0.00031 44.2 11.5 207 214-429 789-1018(1030)
277 PF06416 DUF1076: Protein of u 80.8 0.96 2.1E-05 39.2 1.7 51 75-131 39-95 (113)
278 KOG1571 Predicted E3 ubiquitin 80.2 1.8 3.9E-05 45.9 3.8 41 77-126 306-346 (355)
279 KOG1039 Predicted E3 ubiquitin 79.9 1.4 3.1E-05 47.3 3.0 54 74-127 159-221 (344)
280 KOG0301 Phospholipase A2-activ 79.3 27 0.00058 40.4 12.7 152 172-335 563-727 (745)
281 KOG1001 Helicase-like transcri 78.2 0.66 1.4E-05 54.9 -0.1 50 77-131 455-504 (674)
282 KOG2274 Predicted importin 9 [ 78.0 1.7E+02 0.0037 35.5 25.2 227 293-536 460-695 (1005)
283 PF08324 PUL: PUL domain; Int 76.8 40 0.00086 35.4 13.0 171 255-427 78-266 (268)
284 PF11793 FANCL_C: FANCL C-term 76.8 1.2 2.6E-05 36.1 1.0 52 76-127 2-66 (70)
285 KOG0828 Predicted E3 ubiquitin 76.2 1.7 3.7E-05 47.5 2.3 33 90-127 602-634 (636)
286 COG5116 RPN2 26S proteasome re 75.7 11 0.00024 42.5 8.2 97 726-842 551-648 (926)
287 PF10363 DUF2435: Protein of u 75.6 6.6 0.00014 33.7 5.3 83 458-555 5-88 (92)
288 COG5218 YCG1 Chromosome conden 75.1 58 0.0013 37.2 13.5 114 195-320 91-204 (885)
289 KOG0827 Predicted E3 ubiquitin 74.3 2.4 5.1E-05 45.1 2.7 48 77-127 5-56 (465)
290 PF14668 RICTOR_V: Rapamycin-i 74.0 15 0.00033 29.9 6.7 66 518-586 4-69 (73)
291 PF05918 API5: Apoptosis inhib 73.9 17 0.00037 41.9 9.6 114 173-308 42-158 (556)
292 KOG4653 Uncharacterized conser 73.7 95 0.0021 37.3 15.3 170 214-393 742-920 (982)
293 KOG2956 CLIP-associating prote 73.7 1E+02 0.0022 34.5 14.7 168 167-349 301-473 (516)
294 PF04641 Rtf2: Rtf2 RING-finge 72.4 2.7 6E-05 43.9 2.7 34 77-110 35-69 (260)
295 PF14668 RICTOR_V: Rapamycin-i 72.3 11 0.00024 30.7 5.5 64 300-363 4-68 (73)
296 KOG1992 Nuclear export recepto 72.1 2.3E+02 0.005 34.2 19.3 193 124-328 337-544 (960)
297 KOG2137 Protein kinase [Signal 71.4 1.7E+02 0.0038 34.6 16.7 131 322-468 387-520 (700)
298 KOG4653 Uncharacterized conser 70.8 1.4E+02 0.0029 36.1 15.7 227 407-669 728-962 (982)
299 KOG2956 CLIP-associating prote 70.1 1.9E+02 0.0041 32.4 17.6 141 367-529 332-476 (516)
300 KOG3161 Predicted E3 ubiquitin 70.0 2.5 5.3E-05 47.9 1.7 32 77-108 12-47 (861)
301 PF08167 RIX1: rRNA processing 69.9 25 0.00053 33.9 8.5 108 241-351 26-141 (165)
302 KOG1820 Microtubule-associated 69.2 96 0.0021 37.9 14.8 184 334-538 263-451 (815)
303 COG5098 Chromosome condensatio 68.8 78 0.0017 37.0 12.9 212 336-587 908-1125(1128)
304 KOG4172 Predicted E3 ubiquitin 68.4 1.6 3.5E-05 32.4 -0.0 44 78-126 9-53 (62)
305 KOG2930 SCF ubiquitin ligase, 67.6 5.1 0.00011 34.2 2.7 27 93-125 80-106 (114)
306 KOG0825 PHD Zn-finger protein 67.6 1.6 3.4E-05 50.4 -0.3 43 78-126 125-170 (1134)
307 PF14500 MMS19_N: Dos2-interac 67.4 1.7E+02 0.0036 30.7 16.4 215 244-486 3-238 (262)
308 KOG1820 Microtubule-associated 66.7 1.5E+02 0.0033 36.2 15.8 185 243-435 256-443 (815)
309 PF11791 Aconitase_B_N: Aconit 66.4 12 0.00026 34.9 5.1 98 727-843 23-122 (154)
310 KOG4464 Signaling protein RIC- 65.7 2.2E+02 0.0047 31.4 18.3 79 214-292 112-197 (532)
311 KOG4265 Predicted E3 ubiquitin 65.4 4.1 8.9E-05 43.3 2.2 46 77-128 291-337 (349)
312 KOG0414 Chromosome condensatio 65.2 3.7E+02 0.008 33.9 26.6 123 613-798 938-1060(1251)
313 PF01347 Vitellogenin_N: Lipop 65.1 83 0.0018 37.6 13.7 167 241-431 396-585 (618)
314 COG5219 Uncharacterized conser 65.0 3.4 7.3E-05 48.9 1.6 45 78-126 1471-1522(1525)
315 PF06685 DUF1186: Protein of u 64.6 1.1E+02 0.0023 31.8 12.1 82 453-552 70-161 (249)
316 PF14225 MOR2-PAG1_C: Cell mor 64.3 1.9E+02 0.0041 30.3 18.2 161 281-469 63-241 (262)
317 COG5218 YCG1 Chromosome conden 64.2 1.1E+02 0.0023 35.3 12.6 111 281-399 90-204 (885)
318 PF11865 DUF3385: Domain of un 62.8 58 0.0013 31.2 9.5 138 196-349 11-153 (160)
319 PF10363 DUF2435: Protein of u 62.4 24 0.00051 30.3 6.0 69 242-313 5-73 (92)
320 PF11865 DUF3385: Domain of un 62.4 92 0.002 29.8 10.7 145 281-434 9-156 (160)
321 PF08167 RIX1: rRNA processing 62.3 28 0.0006 33.6 7.2 107 326-437 27-145 (165)
322 PF05605 zf-Di19: Drought indu 62.3 4.4 9.5E-05 30.8 1.3 38 75-124 1-39 (54)
323 PF14631 FancD2: Fanconi anaem 61.7 1.9E+02 0.0041 38.1 16.3 49 283-333 228-286 (1426)
324 PF14726 RTTN_N: Rotatin, an a 61.7 62 0.0013 28.1 8.3 67 276-343 24-90 (98)
325 PF14447 Prok-RING_4: Prokaryo 61.4 4.2 9E-05 30.7 1.0 44 78-129 9-52 (55)
326 PF01347 Vitellogenin_N: Lipop 61.4 1.4E+02 0.003 35.7 14.6 178 367-573 398-587 (618)
327 KOG4185 Predicted E3 ubiquitin 61.3 6.5 0.00014 42.1 3.0 62 78-144 5-77 (296)
328 COG5098 Chromosome condensatio 61.1 47 0.001 38.7 9.4 120 728-852 301-423 (1128)
329 cd03561 VHS VHS domain family; 60.5 1E+02 0.0023 28.3 10.5 89 173-270 20-113 (133)
330 COG5175 MOT2 Transcriptional r 60.5 7.6 0.00016 40.5 3.0 46 79-129 17-66 (480)
331 KOG3800 Predicted E3 ubiquitin 60.4 7.3 0.00016 40.1 2.8 45 79-128 3-52 (300)
332 smart00288 VHS Domain present 59.0 30 0.00064 32.0 6.5 73 502-574 38-110 (133)
333 cd03568 VHS_STAM VHS domain fa 58.1 32 0.00069 32.3 6.6 72 502-574 38-109 (144)
334 KOG1788 Uncharacterized conser 58.1 4.6E+02 0.0099 32.7 24.7 361 172-554 486-960 (2799)
335 cd03569 VHS_Hrs_Vps27p VHS dom 58.0 31 0.00068 32.3 6.5 72 502-574 42-113 (142)
336 PF11791 Aconitase_B_N: Aconit 57.1 27 0.00058 32.7 5.6 29 283-312 95-123 (154)
337 KOG1566 Conserved protein Mo25 56.6 2.7E+02 0.0059 29.6 19.0 196 190-393 74-288 (342)
338 cd03568 VHS_STAM VHS domain fa 56.3 33 0.0007 32.3 6.3 71 196-270 38-111 (144)
339 PRK06266 transcription initiat 54.9 33 0.00071 33.5 6.3 23 2-27 41-63 (178)
340 PF11229 DUF3028: Protein of u 54.8 2.1E+02 0.0046 32.5 12.9 228 281-529 96-352 (589)
341 cd03561 VHS VHS domain family; 54.0 46 0.001 30.7 6.9 73 502-574 38-111 (133)
342 PF00790 VHS: VHS domain; Int 53.5 32 0.0007 32.1 5.9 72 502-573 43-116 (140)
343 KOG2933 Uncharacterized conser 53.4 56 0.0012 34.5 7.8 138 503-666 90-229 (334)
344 PF14570 zf-RING_4: RING/Ubox 53.2 12 0.00027 27.5 2.3 43 79-126 1-47 (48)
345 KOG4464 Signaling protein RIC- 51.6 3.7E+02 0.0081 29.7 16.2 150 243-393 48-233 (532)
346 PF11864 DUF3384: Domain of un 51.1 4.3E+02 0.0093 30.3 20.3 246 253-529 42-329 (464)
347 cd03569 VHS_Hrs_Vps27p VHS dom 50.7 1.9E+02 0.0042 27.0 10.6 70 196-269 42-114 (142)
348 cd03567 VHS_GGA VHS domain fam 50.6 42 0.0009 31.3 6.0 70 196-269 39-116 (139)
349 KOG2137 Protein kinase [Signal 50.5 2E+02 0.0043 34.1 12.4 39 375-413 480-518 (700)
350 KOG0298 DEAD box-containing he 50.3 6.2 0.00013 48.8 0.6 43 75-123 1152-1195(1394)
351 KOG0825 PHD Zn-finger protein 49.0 25 0.00054 41.2 5.0 50 75-124 95-151 (1134)
352 PF11707 Npa1: Ribosome 60S bi 48.0 4E+02 0.0086 28.9 15.4 160 153-316 58-241 (330)
353 cd03567 VHS_GGA VHS domain fam 47.9 61 0.0013 30.2 6.6 71 502-572 39-113 (139)
354 KOG3002 Zn finger protein [Gen 47.8 17 0.00036 38.7 3.2 60 73-144 45-105 (299)
355 PF08506 Cse1: Cse1; InterPro 47.4 3.3E+02 0.0072 30.1 13.4 162 129-307 191-370 (370)
356 PHA02825 LAP/PHD finger-like p 47.3 25 0.00054 33.0 3.9 48 75-127 7-59 (162)
357 PF04499 SAPS: SIT4 phosphatas 46.3 1.5E+02 0.0032 34.1 10.7 115 455-574 20-147 (475)
358 KOG1020 Sister chromatid cohes 45.7 4.9E+02 0.011 33.9 15.2 140 282-435 816-960 (1692)
359 KOG2114 Vacuolar assembly/sort 45.1 36 0.00078 40.5 5.5 41 75-124 839-880 (933)
360 PF05290 Baculo_IE-1: Baculovi 44.6 29 0.00063 31.5 3.7 50 77-129 81-134 (140)
361 PF00790 VHS: VHS domain; Int 44.0 1.5E+02 0.0032 27.6 8.7 88 173-269 25-118 (140)
362 PF08216 CTNNBL: Catenin-beta- 43.2 30 0.00065 30.5 3.5 42 300-341 63-104 (108)
363 KOG3665 ZYG-1-like serine/thre 42.9 6.9E+02 0.015 30.3 21.9 188 347-568 494-690 (699)
364 PF12530 DUF3730: Protein of u 42.4 3.9E+02 0.0085 27.3 19.3 137 284-435 2-151 (234)
365 smart00288 VHS Domain present 41.6 98 0.0021 28.6 7.0 74 726-802 37-111 (133)
366 COG5116 RPN2 26S proteasome re 41.3 62 0.0013 36.8 6.3 98 455-574 550-649 (926)
367 PF14726 RTTN_N: Rotatin, an a 40.6 2E+02 0.0043 25.0 8.1 92 214-307 2-95 (98)
368 PF13251 DUF4042: Domain of un 40.5 3.7E+02 0.0079 26.4 12.3 113 730-846 44-176 (182)
369 KOG2676 Uncharacterized conser 39.6 29 0.00062 37.0 3.4 64 173-238 376-440 (478)
370 PF05883 Baculo_RING: Baculovi 39.6 23 0.00051 32.3 2.4 52 76-133 26-86 (134)
371 KOG4362 Transcriptional regula 39.1 14 0.0003 43.2 1.1 64 77-143 22-85 (684)
372 PF13251 DUF4042: Domain of un 38.8 3.2E+02 0.0069 26.8 10.3 136 215-352 2-173 (182)
373 KOG1940 Zn-finger protein [Gen 38.3 21 0.00045 37.2 2.1 43 76-124 158-204 (276)
374 smart00638 LPD_N Lipoprotein N 38.3 7.3E+02 0.016 29.2 20.4 208 241-483 312-543 (574)
375 PF14446 Prok-RING_1: Prokaryo 37.8 30 0.00065 26.2 2.3 28 75-102 4-35 (54)
376 PF14225 MOR2-PAG1_C: Cell mor 37.1 5.1E+02 0.011 27.1 17.6 176 240-438 64-257 (262)
377 KOG1020 Sister chromatid cohes 35.8 1.2E+03 0.025 30.8 32.0 142 195-353 816-960 (1692)
378 PRK11088 rrmA 23S rRNA methylt 35.1 17 0.00036 38.4 0.9 26 77-102 3-31 (272)
379 PF08389 Xpo1: Exportin 1-like 33.0 2.7E+02 0.0057 25.6 8.8 129 420-570 2-148 (148)
380 KOG1086 Cytosolic sorting prot 31.9 6.5E+02 0.014 28.0 11.9 153 101-273 7-206 (594)
381 KOG2933 Uncharacterized conser 31.9 3.7E+02 0.008 28.7 9.8 136 329-483 93-232 (334)
382 PF12054 DUF3535: Domain of un 31.6 8.2E+02 0.018 27.8 16.2 232 214-466 102-364 (441)
383 PF10367 Vps39_2: Vacuolar sor 31.5 58 0.0013 28.5 3.7 29 76-104 78-108 (109)
384 PF13811 DUF4186: Domain of un 31.1 37 0.0008 29.7 2.2 20 88-108 64-86 (111)
385 PF12830 Nipped-B_C: Sister ch 30.7 1.6E+02 0.0034 29.0 6.9 64 775-844 11-74 (187)
386 KOG4739 Uncharacterized protei 30.4 24 0.00053 35.6 1.1 49 87-145 15-64 (233)
387 PF14663 RasGEF_N_2: Rapamycin 29.0 2.3E+02 0.0049 25.4 7.0 32 725-756 7-38 (115)
388 KOG1814 Predicted E3 ubiquitin 28.9 69 0.0015 35.0 4.1 47 76-122 184-235 (445)
389 KOG0883 Cyclophilin type, U bo 28.5 24 0.00053 37.8 0.7 33 74-106 99-135 (518)
390 PF03130 HEAT_PBS: PBS lyase H 28.3 78 0.0017 20.0 2.8 26 562-597 1-26 (27)
391 PF12530 DUF3730: Protein of u 28.1 6.6E+02 0.014 25.6 18.1 136 198-352 3-150 (234)
392 KOG4275 Predicted E3 ubiquitin 27.9 15 0.00032 37.8 -0.9 40 76-126 300-341 (350)
393 PF12830 Nipped-B_C: Sister ch 27.2 1.7E+02 0.0037 28.7 6.5 67 241-313 9-75 (187)
394 PF10521 DUF2454: Protein of u 26.7 3.3E+02 0.0071 28.8 9.0 142 404-557 120-278 (282)
395 PF08216 CTNNBL: Catenin-beta- 26.5 81 0.0018 27.9 3.5 43 215-257 62-104 (108)
396 PF12783 Sec7_N: Guanine nucle 26.5 5.7E+02 0.012 24.4 12.0 80 236-318 69-152 (168)
397 PLN02195 cellulose synthase A 25.8 55 0.0012 40.2 3.2 46 78-128 8-60 (977)
398 PF10272 Tmpp129: Putative tra 25.6 51 0.0011 35.9 2.6 42 89-130 301-354 (358)
399 KOG2032 Uncharacterized conser 25.5 1E+03 0.023 27.1 21.6 112 455-575 253-371 (533)
400 PF09162 Tap-RNA_bind: Tap, RN 25.4 50 0.0011 28.0 1.9 20 90-109 10-29 (88)
401 KOG2034 Vacuolar sorting prote 25.0 99 0.0021 37.4 4.9 33 77-109 818-852 (911)
402 COG5236 Uncharacterized conser 24.9 53 0.0012 34.6 2.4 75 75-153 60-135 (493)
403 KOG0301 Phospholipase A2-activ 24.1 1.3E+03 0.027 27.6 18.4 157 253-414 557-727 (745)
404 KOG1812 Predicted E3 ubiquitin 23.7 85 0.0018 34.9 3.9 48 76-123 146-197 (384)
405 PF06012 DUF908: Domain of Unk 23.6 2.3E+02 0.005 30.8 7.3 61 378-438 238-300 (329)
406 COG5656 SXM1 Importin, protein 23.3 1.4E+03 0.03 27.7 20.3 302 344-675 388-715 (970)
407 KOG4231 Intracellular membrane 23.1 1.4E+02 0.003 33.7 5.2 171 261-483 226-397 (763)
408 PF14663 RasGEF_N_2: Rapamycin 23.0 1.8E+02 0.004 26.0 5.3 39 239-277 7-45 (115)
409 COG1675 TFA1 Transcription ini 22.6 1.8E+02 0.0039 28.2 5.4 49 76-145 113-162 (176)
410 PF11707 Npa1: Ribosome 60S bi 22.4 1E+03 0.022 25.8 19.3 156 326-488 58-240 (330)
411 PF11864 DUF3384: Domain of un 22.1 1.2E+03 0.026 26.6 21.9 92 471-574 230-329 (464)
412 PLN02189 cellulose synthase 21.8 63 0.0014 40.0 2.6 47 76-127 34-87 (1040)
413 PF07923 N1221: N1221-like pro 21.7 1.4E+02 0.0031 31.7 5.1 60 724-783 58-127 (293)
414 PF10521 DUF2454: Protein of u 21.3 3.7E+02 0.0079 28.4 8.1 70 366-435 121-203 (282)
415 PF03854 zf-P11: P-11 zinc fin 21.0 37 0.00081 24.8 0.3 31 91-127 16-46 (50)
416 PF06012 DUF908: Domain of Unk 20.1 3.6E+02 0.0078 29.2 7.9 76 214-289 237-323 (329)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=8.6e-57 Score=549.99 Aligned_cols=624 Identities=18% Similarity=0.237 Sum_probs=516.6
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHh-cCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCc
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRN-AGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDE 230 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~ 230 (859)
.+..+++.|.+++...+..++|+..|+.+++.++++|..+.+ .|+||.|+.+|++++. .+|.+|+.+|.+|+.++
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~----~vk~nAaaaL~nLS~~e 89 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTL----GAKVNAAAVLGVLCKEE 89 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCH----HHHHHHHHHHHHHhcCH
Confidence 456677778865332233446999999999999999999986 8999999999999888 99999999999999999
Q ss_pred chHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC---hhhhhHhhhhhChHHHHHHhhcCCC---ChHHHHHHH
Q 002999 231 ESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID---EAYCKSVASEKGALVLLSSMTGNLE---LPALSNLAD 304 (859)
Q Consensus 231 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~a~ 304 (859)
++|..|+..|++|+|+.+|++++.+.++.|+.+|++|+.+ ++++..|+...|+||.|+.+++ ++ |..+++.++
T Consensus 90 ~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~-~gsk~d~~L~~~Av 168 (2102)
T PLN03200 90 DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQ-PGNKQDKVVEGLLT 168 (2102)
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHh-CCchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999987 4456677767999999999999 33 344667788
Q ss_pred HHHHHhcCCCcChH-HHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC-CccHHHHHH-hhHHHHHHHhC---ChhH
Q 002999 305 EVFKKMERIEEIVQ-PLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT-NSCKEHIAR-QCAKVLVELLS---KPAG 378 (859)
Q Consensus 305 ~aL~nL~~~~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~-~~~~~~i~~-~gi~~Lv~lL~---~~~~ 378 (859)
.+|.|||.+++++. .+++.|+||.|+.+|.++++..+.+++.+|.+++.+ .+.+..+.+ +++|.|+++|+ ++.+
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~V 248 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSV 248 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHH
Confidence 99999999988875 578999999999999999999999999999998876 446666654 55899999997 4589
Q ss_pred HHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccC------CCCHHHHHHHHHHHHHhhcCCCc-----------c
Q 002999 379 RAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSH------DASPELKELAAATIANVVSNPGC-----------W 440 (859)
Q Consensus 379 ~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~------~~~~~~~~~a~~~L~nL~~~~~~-----------~ 440 (859)
++.|+++|+||+.++ +++..+++.|++|+|++++.+.. ..+..++++|.|+|.|||.+... .
T Consensus 249 RE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~ 328 (2102)
T PLN03200 249 RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESP 328 (2102)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhccc
Confidence 999999999999976 78999999999999999997522 12356799999999999985211 0
Q ss_pred cc-------------------------cccc--------------cc---------------------cCcccccchHHH
Q 002999 441 EL-------------------------ASAD--------------KL---------------------GHSMQSESIVSS 460 (859)
Q Consensus 441 ~~-------------------------~~~~--------------~~---------------------~~~l~~~~~i~~ 460 (859)
+. ..++ .+ ...+.+.++++.
T Consensus 329 rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~ 408 (2102)
T PLN03200 329 RSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKV 408 (2102)
T ss_pred chHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhh
Confidence 00 0000 00 011234466777
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhc
Q 002999 461 LLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYAL 540 (859)
Q Consensus 461 Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l 540 (859)
|+.||..++.++|..++++|++||.++. +.++.|.+.||++.|+++|.+++..+|..|+++|++++ ..+++.+..+
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~---e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa-~~ndenr~aI 484 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKG---GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILT-DEVDESKWAI 484 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCH---HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 8888888889999999999999998864 44788999999999999999999999999999999998 4566777888
Q ss_pred CCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHH-HhccHHHHHHHHhhhcccccCCCCCCcchhHHhhh
Q 002999 541 KPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLL-EATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLL 619 (859)
Q Consensus 541 ~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~-~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~ 619 (859)
.+.|+||+|+++|++++. +++..|+|+|+||+.++.+.+.++ +.|++++|+++|.+.. ...++.++
T Consensus 485 ieaGaIP~LV~LL~s~~~--~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd-----------~~~q~~Aa 551 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQ--KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG-----------PKGQEIAA 551 (2102)
T ss_pred HHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC-----------HHHHHHHH
Confidence 899999999999998887 999999999999999887776655 6899999999998621 12467778
Q ss_pred hhhhhcccCCChhh-----------------------------------H-HHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 002999 620 GLLLHFTRSVNPQT-----------------------------------L-GMVREQRLMTIFRDQLSFPSKARVKQLAA 663 (859)
Q Consensus 620 ~~L~~~~~~~~~~~-----------------------------------~-~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa 663 (859)
.+|.+++...+.+. + ......|++|.|+++|+++ ++.+|+.|+
T Consensus 552 ~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa 630 (2102)
T PLN03200 552 KTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAA 630 (2102)
T ss_pred HHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHH
Confidence 88887764322221 1 1122468999999999995 999999999
Q ss_pred HHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHH
Q 002999 664 HGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVE 743 (859)
Q Consensus 664 ~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 743 (859)
|+|.+++.+..... -.++.+|+|+||+.+|.+++.+++
T Consensus 631 ~iLsnL~a~~~d~~------------------------------------------~avv~agaIpPLV~LLss~~~~v~ 668 (2102)
T PLN03200 631 SVLADIFSSRQDLC------------------------------------------ESLATDEIINPCIKLLTNNTEAVA 668 (2102)
T ss_pred HHHHHHhcCChHHH------------------------------------------HHHHHcCCHHHHHHHHhcCChHHH
Confidence 99999986543211 125689999999999999999999
Q ss_pred HHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHH
Q 002999 744 IAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEA 823 (859)
Q Consensus 744 ~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~l 823 (859)
..|+.||.+|+.. .. +.....+.+.|+|++|+++|. ..+.++.+.|+.+|.+++...+...++...+ ++.+||++
T Consensus 669 keAA~AL~nL~~~-~~--~~q~~~~v~~GaV~pL~~LL~-~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~-~I~~Lv~l 743 (2102)
T PLN03200 669 TQSARALAALSRS-IK--ENRKVSYAAEDAIKPLIKLAK-SSSIEVAEQAVCALANLLSDPEVAAEALAED-IILPLTRV 743 (2102)
T ss_pred HHHHHHHHHHHhC-CC--HHHHHHHHHcCCHHHHHHHHh-CCChHHHHHHHHHHHHHHcCchHHHHHHhcC-cHHHHHHH
Confidence 9999999999964 22 233456789999999999998 4899999999999999999988887777655 46999999
Q ss_pred hhcCChhhHHHHHHHHHHHhhh
Q 002999 824 FKHGNANAKRHAQEALTNLKQI 845 (859)
Q Consensus 824 l~~~~~~~~~~A~~~L~~L~~~ 845 (859)
+++|++..|+.|+++|.+|.+-
T Consensus 744 Lr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 744 LREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHhCChHHHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.8e-52 Score=510.45 Aligned_cols=619 Identities=18% Similarity=0.169 Sum_probs=498.7
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-- 229 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-- 229 (859)
.++.++..|.++++ .....|+..|.+++.. +.+|..+...|+||+|+.+|++++. +.|+.|+.+|.+|+.+
T Consensus 59 aIP~LV~lL~sg~~--~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sGs~----eaKe~AA~AL~sLS~~~~ 131 (2102)
T PLN03200 59 AMPLLVSLLRSGTL--GAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSGSA----EAQKAAAEAIYAVSSGGL 131 (2102)
T ss_pred cHHHHHHHHcCCCH--HHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCCCH----HHHHHHHHHHHHHHcCcc
Confidence 47889999986543 3333588889999874 7789899999999999999999987 9999999999999987
Q ss_pred -cchH-HHHHhhCchHHHHHHhcCCC---HHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHH
Q 002999 230 -EESK-KIMLEEGVTKSVIHSLIGNS---EKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLAD 304 (859)
Q Consensus 230 -~~~r-~~i~~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 304 (859)
+.++ ..++..|++|.|+.+|++++ ..+++.|+.+|.+|+..++++.....+.|++|.|+.+|+ ++++..+..|+
T Consensus 132 ~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs-S~d~~lQ~eAa 210 (2102)
T PLN03200 132 SDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS-SGNSDAQANAA 210 (2102)
T ss_pred hhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc-CCCHHHHHHHH
Confidence 4445 44568999999999999874 235677889999999998877554446899999999999 88999999999
Q ss_pred HHHHHhcCC-CcChHHHHhcCChHHHHHHhccC-ChHHHHHHHHHHHHhcCCC-ccHHHHHH-hhHHHHHHHhC--C---
Q 002999 305 EVFKKMERI-EEIVQPLAAAGRFEPLINRLCQG-SDNVQIEMAFLVGKLTLTN-SCKEHIAR-QCAKVLVELLS--K--- 375 (859)
Q Consensus 305 ~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~la~~~-~~~~~i~~-~gi~~Lv~lL~--~--- 375 (859)
.+|.+++.+ ++.+..+++.|+||+|+++|+++ +..++.+|+++|.+|+.++ +++..+.+ +|+++|++++. +
T Consensus 211 ~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~ 290 (2102)
T PLN03200 211 SLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEF 290 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhh
Confidence 999888865 66888999999999999999875 4589999999999999864 56777755 56899999987 3
Q ss_pred ------hhHHHHHHHHHHHhhCCCcc------------h--HHH-----------------------HHc-CcHHHHHHH
Q 002999 376 ------PAGRAASLKALYNLSGLDDN------------A--TIL-----------------------VDS-ALLPALTDI 411 (859)
Q Consensus 376 ------~~~~~~a~~aL~~Ls~~~~~------------~--~~i-----------------------~~~-G~i~~Lv~l 411 (859)
...++.|+|+|.|||.+... + ..+ ++. .+.+.|+.+
T Consensus 291 ~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~L 370 (2102)
T PLN03200 291 MQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKL 370 (2102)
T ss_pred hccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHH
Confidence 23589999999999884211 0 000 111 122344444
Q ss_pred HhccC---------------------------------------CCCHHHHHHHHHHHHHhhcCCCcccccccccccCcc
Q 002999 412 LFKSH---------------------------------------DASPELKELAAATIANVVSNPGCWELASADKLGHSM 452 (859)
Q Consensus 412 L~~~~---------------------------------------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l 452 (859)
+++.+ ..+.++++++++.|++|+.++.+... .+
T Consensus 371 lr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~--------aI 442 (2102)
T PLN03200 371 LKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWE--------AL 442 (2102)
T ss_pred hCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHH--------HH
Confidence 44211 12356888899999999877655432 58
Q ss_pred cccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 002999 453 QSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERI 532 (859)
Q Consensus 453 ~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~ 532 (859)
.+.|+++.|+++|+++++..|+.++++|.+++.... +.+..|.++||+|+|+.+|.+++.+++..|+|+|.|++ ..
T Consensus 443 i~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd---enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa-~~ 518 (2102)
T PLN03200 443 GGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD---ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC-CH 518 (2102)
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh-CC
Confidence 889999999999999999999999999999998653 33677899999999999999999999999999999998 34
Q ss_pred cHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHH----------------H-----H----------
Q 002999 533 GQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEE----------------V-----K---------- 581 (859)
Q Consensus 533 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~----------------~-----~---------- 581 (859)
+++.+..+.+.|++++|+++|++++. +.+..|+++|.+|..+.+. . +
T Consensus 519 ~~qir~iV~~aGAIppLV~LL~sgd~--~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 519 SEDIRACVESAGAVPALLWLLKNGGP--KGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred cHHHHHHHHHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence 55666667677999999999999876 8999999999999632110 0 0
Q ss_pred -------HHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCC
Q 002999 582 -------TLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPS 654 (859)
Q Consensus 582 -------~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~ 654 (859)
.....|+++.|+.+|.+-. ...++.++++|.+++.. +++....+...|+||+|+.+|++.
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sgs-----------~~ikk~Aa~iLsnL~a~-~~d~~~avv~agaIpPLV~LLss~- 663 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSSK-----------EETQEKAASVLADIFSS-RQDLCESLATDEIINPCIKLLTNN- 663 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCCC-----------HHHHHHHHHHHHHHhcC-ChHHHHHHHHcCCHHHHHHHHhcC-
Confidence 0113589999999988621 23578889999999874 777777789999999999999994
Q ss_pred hHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhh
Q 002999 655 KARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDL 734 (859)
Q Consensus 655 ~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~l 734 (859)
++++++.|||+|.+++.+... .+...++++|+|+||+++
T Consensus 664 ~~~v~keAA~AL~nL~~~~~~-----------------------------------------~q~~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 664 TEAVATQSARALAALSRSIKE-----------------------------------------NRKVSYAAEDAIKPLIKL 702 (2102)
T ss_pred ChHHHHHHHHHHHHHHhCCCH-----------------------------------------HHHHHHHHcCCHHHHHHH
Confidence 999999999999999864321 112335789999999999
Q ss_pred hccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcccc---ccccc
Q 002999 735 LAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGH---SHRYS 811 (859)
Q Consensus 735 L~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~---~~~~~ 811 (859)
|.+++.++++.|+.||.+|+.+ + .+...+.++|+|++|++++++ ++++.|+.|+|+|..+++.... ...+.
T Consensus 703 L~~~d~~v~e~Al~ALanLl~~-~----e~~~ei~~~~~I~~Lv~lLr~-G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~ 776 (2102)
T PLN03200 703 AKSSSIEVAEQAVCALANLLSD-P----EVAAEALAEDIILPLTRVLRE-GTLEGKRNAARALAQLLKHFPVDDVLKDSV 776 (2102)
T ss_pred HhCCChHHHHHHHHHHHHHHcC-c----hHHHHHHhcCcHHHHHHHHHh-CChHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 9999999999999999999988 3 356778889999999999995 9999999999999999975532 33566
Q ss_pred cchhhHHHHHHHhhcCChhhHHH--HHHHHHHHhhhcCCcCccc
Q 002999 812 LNQSLVRALVEAFKHGNANAKRH--AQEALTNLKQISGLSGKAS 853 (859)
Q Consensus 812 ~~~~~~~~Lv~ll~~~~~~~~~~--A~~~L~~L~~~~~~~~~~~ 853 (859)
...+.+.+|+++|+..|...... |..+|+.|++ ++.++.|+
T Consensus 777 ~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~-~~~~~~~~ 819 (2102)
T PLN03200 777 QCRGTVLALVDLLNSTDLDSSATSEALEALALLAR-TKGGANFS 819 (2102)
T ss_pred HHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh-hcccCCCC
Confidence 66777899999999999887776 9999999999 66666665
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-37 Score=330.26 Aligned_cols=407 Identities=17% Similarity=0.209 Sum_probs=345.9
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhcCCCcc---HHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCC-cchHH
Q 002999 326 FEPLINRLCQGSDNVQIEMAFLVGKLTLTNSC---KEHIARQCAKVLVELLS---KPAGRAASLKALYNLSGLD-DNATI 398 (859)
Q Consensus 326 i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~---~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~-~~~~~ 398 (859)
.+.++..+.+++...+..+...+..+...+.+ ...+..+.+|.+|+.|. ++.++..|+|+|.|+++.. +..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 67788888898998899999998888765544 44455555799999997 6899999999999999988 66788
Q ss_pred HHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCCh-HHHHHHH
Q 002999 399 LVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSP-QCQVSTL 477 (859)
Q Consensus 399 i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~-~~~~~a~ 477 (859)
++++|++|.++.++.+ ++..++++|.|+|.|++.+++..+. .+.+.|++++|+.++...++ .+..++.
T Consensus 148 vv~agavp~fi~Ll~s---~~~~v~eQavWALgNIagds~~~Rd--------~vl~~g~l~pLl~~l~~~~~~~~lRn~t 216 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSS---PSADVREQAVWALGNIAGDSPDCRD--------YVLSCGALDPLLRLLNKSDKLSMLRNAT 216 (514)
T ss_pred cccCCchHHHHHHhcC---CcHHHHHHHHHHHhccccCChHHHH--------HHHhhcchHHHHHHhccccchHHHHHHH
Confidence 9999999999999976 5679999999999999999988876 57889999999999988876 7899999
Q ss_pred HHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCC
Q 002999 478 RILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQ 557 (859)
Q Consensus 478 ~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 557 (859)
|+|.|||++....... ..+ ...+|.|..++.+.++++...|+|+|.+|+++ +.+....+.+.|.++.||.+|.+.+
T Consensus 217 W~LsNlcrgk~P~P~~-~~v--~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-~ne~iq~vi~~gvv~~LV~lL~~~~ 292 (514)
T KOG0166|consen 217 WTLSNLCRGKNPSPPF-DVV--APILPALLRLLHSTDEEVLTDACWALSYLTDG-SNEKIQMVIDAGVVPRLVDLLGHSS 292 (514)
T ss_pred HHHHHHHcCCCCCCcH-HHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHccchHHHHHHHcCCC
Confidence 9999999985321111 111 13689999999999999999999999999954 4555677788899999999999998
Q ss_pred CchhHHHHHHHHHHHhcCCcHHH-HHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHH
Q 002999 558 SANCERSDAACILANIQLSEEEV-KTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGM 636 (859)
Q Consensus 558 ~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~ 636 (859)
. .++.+|.++++|++.+++.. +.++..|++|.|..++.... ...+.+.+.+++.+++.. +++..+.
T Consensus 293 ~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~----------~~~ikkEAcW~iSNItAG-~~~qiqa 359 (514)
T KOG0166|consen 293 P--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP----------KESIKKEACWTISNITAG-NQEQIQA 359 (514)
T ss_pred c--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc----------chhHHHHHHHHHHHhhcC-CHHHHHH
Confidence 7 88999999999999988777 99999999999999987522 122567799999999984 7777778
Q ss_pred HHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCc
Q 002999 637 VREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCED 716 (859)
Q Consensus 637 i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (859)
+.+.|++|.|+.+|+++ +.++|++||||++|++.++. +
T Consensus 360 Vida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~-----------------------------------------~ 397 (514)
T KOG0166|consen 360 VIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGT-----------------------------------------P 397 (514)
T ss_pred HHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCC-----------------------------------------H
Confidence 88999999999999995 99999999999999876532 2
Q ss_pred CCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcch-----hhHHHHHHhcCChHHHHHHhhhcCchhHHH
Q 002999 717 DSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNF-----KRGVDELEREGALDAVVDLFTEVRPGLLQE 791 (859)
Q Consensus 717 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~-----~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 791 (859)
++..+|++.|+|+||+++|.-.|..+..+++.+|.++..- ++.. +.....|.++||++++-.+. +|.++++++
T Consensus 398 ~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~-~e~~~~~~~n~~~~~IEe~ggldkiE~LQ-~hen~~Iy~ 475 (514)
T KOG0166|consen 398 EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV-GEAEKNRGTNPLAIMIEEAGGLDKIENLQ-SHENEEIYK 475 (514)
T ss_pred HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH-HHHhccccccHHHHHHHHccChhHHHHhh-ccccHHHHH
Confidence 5667899999999999999999999999999999999975 3311 34567899999999996655 489999999
Q ss_pred HHHHHHHHHHhcc
Q 002999 792 RTVWMLERVLRVE 804 (859)
Q Consensus 792 ~A~~~l~~~~~~~ 804 (859)
+|..+++++|..+
T Consensus 476 ~A~~II~~yf~~e 488 (514)
T KOG0166|consen 476 KAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999765
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.8e-36 Score=298.78 Aligned_cols=414 Identities=17% Similarity=0.173 Sum_probs=339.6
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhcCC--CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHH
Q 002999 283 ALVLLSSMTGNLELPALSNLADEVFKKMERI--EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEH 360 (859)
Q Consensus 283 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~ 360 (859)
-+|.|..-|. ++|.+.+..|..-.+.+-+. ..-...++++|++|.+|++|.+...+
T Consensus 72 elp~lt~~l~-SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~--------------------- 129 (526)
T COG5064 72 ELPQLTQQLF-SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD--------------------- 129 (526)
T ss_pred hhHHHHHHHh-hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh---------------------
Confidence 3577777777 78888888887777776643 33467899999999999999543221
Q ss_pred HHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCCcc-hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCc
Q 002999 361 IARQCAKVLVELLSKPAGRAASLKALYNLSGLDDN-ATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGC 439 (859)
Q Consensus 361 i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~ 439 (859)
-.+..|+|+|.|+++...+ .+.++++|++|.++++|.+ ....+++++.|+|.|++++++.
T Consensus 130 ----------------mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s---~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 130 ----------------MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS---TEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ----------------HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC---chHHHHHHHHHHhccccCCchh
Confidence 2355788889999888754 4667899999999999965 5679999999999999999988
Q ss_pred ccccccccccCcccccchHHHHHHhhcCCCh--HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhH
Q 002999 440 WELASADKLGHSMQSESIVSSLLGLLSGVSP--QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEH 517 (859)
Q Consensus 440 ~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~--~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 517 (859)
.+. .+...|++.+++.++.+..+ .+.+++.|+|.|||++.....+ ...|. .++|.|..|+-+.++++
T Consensus 191 ~RD--------~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~-w~~is--qalpiL~KLiys~D~ev 259 (526)
T COG5064 191 CRD--------YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD-WSNIS--QALPILAKLIYSRDPEV 259 (526)
T ss_pred HHH--------HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc-hHHHH--HHHHHHHHHHhhcCHHH
Confidence 876 47789999999999987655 7889999999999997322111 12222 36899999999999999
Q ss_pred HHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHHhccHHHHHHHH
Q 002999 518 RTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLEATFIKWIVITL 596 (859)
Q Consensus 518 ~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~g~v~~L~~lL 596 (859)
...|+|++.+|+ ..+.+....+...|..+.||.+|.+++. .++..|.+.++|+..+++.. +.++..|+++.+..+|
T Consensus 260 lvDA~WAiSYls-Dg~~E~i~avld~g~~~RLvElLs~~sa--~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lL 336 (526)
T COG5064 260 LVDACWAISYLS-DGPNEKIQAVLDVGIPGRLVELLSHESA--KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLL 336 (526)
T ss_pred HHHHHHHHHHhc-cCcHHHHHHHHhcCCcHHHHHHhcCccc--cccCHHHHhhcCeeecCccceehheecccHHHHHHHh
Confidence 999999999999 5566677888888999999999999887 89999999999999887666 8999999999999998
Q ss_pred hhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccc
Q 002999 597 QTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSL 676 (859)
Q Consensus 597 ~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~ 676 (859)
.+-+. .+.+.+.+++.++|.. +.+..+.+.+.+++|+|+++|.+. +..+|+.|+||+.|.++++.+.
T Consensus 337 s~~ke-----------~irKEaCWTiSNITAG-nteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~ 403 (526)
T COG5064 337 SSPKE-----------NIRKEACWTISNITAG-NTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNR 403 (526)
T ss_pred cChhh-----------hhhhhhheeecccccC-CHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCC
Confidence 77432 2567788899999986 667777788999999999999996 9999999999999988764322
Q ss_pred cccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhc
Q 002999 677 CAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIID 756 (859)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d 756 (859)
|....+|++.|+|+||+++|+-.|..+.+.++.++.+++.-
T Consensus 404 ---------------------------------------PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 404 ---------------------------------------PDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred ---------------------------------------chHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 12345789999999999999999999999999999999865
Q ss_pred cCc--------chhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccc
Q 002999 757 TSK--------NFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEG 805 (859)
Q Consensus 757 ~~~--------~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~ 805 (859)
++ ++.....++.++||++.+..+.. +.+.+++++|..+++++|..++
T Consensus 445 -Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~-s~n~~iy~KAYsIIe~fFgeeD 499 (526)
T COG5064 445 -GEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQD-SVNRTIYDKAYSIIEKFFGEED 499 (526)
T ss_pred -hhHHHHhccCCccHHHHHHHhcccHHHHHHhhh-ccccHHHHHHHHHHHHHcccch
Confidence 33 23344567888999999999887 5999999999999999996543
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-34 Score=288.04 Aligned_cols=366 Identities=19% Similarity=0.177 Sum_probs=326.2
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhh
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYC 274 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~ 274 (859)
...+++..++.+.++ .++..|-.+++||+.+.+|+-.|++-+++..|+.-+..+..+++..++..+++|+.-++++
T Consensus 85 es~epvl~llqs~d~----~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDK----CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNK 160 (550)
T ss_pred hhhhHHHHHHhCcch----hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccch
Confidence 345677888899988 9999999999999999999999999999999999998888999999999999999999999
Q ss_pred hHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 002999 275 KSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT 354 (859)
Q Consensus 275 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~ 354 (859)
.+|+. .|++.+|+++-+ ++|..++.++..+|.|+....+||+.++.+|++|.||.++.+++.++|..+..+|+|++.+
T Consensus 161 ~kiA~-sGaL~pltrLak-skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIAR-SGALEPLTRLAK-SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhh-ccchhhhHhhcc-cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh
Confidence 99985 999999999666 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHhh---HHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 002999 355 NSCKEHIARQC---AKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAAT 429 (859)
Q Consensus 355 ~~~~~~i~~~g---i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~ 429 (859)
..+|..+.+.+ ++.||++++ ++.++..|..+|+||++..+.+..++++|++|.++++|++ +.....-.....
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs---~~~plilasVaC 315 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQS---PMGPLILASVAC 315 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhC---cchhHHHHHHHH
Confidence 99998888766 699999999 8999999999999999999999999999999999999976 333455677788
Q ss_pred HHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHH
Q 002999 430 IANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSP-QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQ 508 (859)
Q Consensus 430 L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~-~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~ 508 (859)
+.|++.++.+-. .+++.|++.+|+++|+.++. ++|.++..+|++|+.+.. .-+..|++.|+++.|+.
T Consensus 316 IrnisihplNe~---------lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse---~n~~~i~esgAi~kl~e 383 (550)
T KOG4224|consen 316 IRNISIHPLNEV---------LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSE---HNVSVIRESGAIPKLIE 383 (550)
T ss_pred HhhcccccCccc---------ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhh---hhhHHHhhcCchHHHHH
Confidence 999999887654 58899999999999998876 599999999999998543 22677999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHH
Q 002999 509 FLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLE 585 (859)
Q Consensus 509 lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~ 585 (859)
++.++.-.+|..-..++..|+ .++..++.+.++|.++.|+.++.+.+. +++-.|+.+|.||+.+-.....+++
T Consensus 384 L~lD~pvsvqseisac~a~La--l~d~~k~~lld~gi~~iLIp~t~s~s~--Ev~gNaAaAL~Nlss~v~~YarviE 456 (550)
T KOG4224|consen 384 LLLDGPVSVQSEISACIAQLA--LNDNDKEALLDSGIIPILIPWTGSESE--EVRGNAAAALINLSSDVEHYARVIE 456 (550)
T ss_pred HHhcCChhHHHHHHHHHHHHH--hccccHHHHhhcCCcceeecccCccch--hhcccHHHHHHhhhhhhHHHHHHHH
Confidence 999999999987777788886 345556788899999999999999887 9999999999999986555444443
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-34 Score=285.08 Aligned_cols=431 Identities=15% Similarity=0.116 Sum_probs=356.3
Q ss_pred CCcchhhh--HhHHHHHHHhcccccHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcC
Q 002999 130 ELKPNIGL--AGAIEEWVNRNVEVQVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSS 207 (859)
Q Consensus 130 ~l~pn~~l--~~~I~~w~~~~~~~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~ 207 (859)
++.|.-.+ ...+++...+-.....+.+...+.+. ++..+..|-..+.+++- +-+++-.+++.+++.+|+.-+.++
T Consensus 62 nlqrsaalafAeitek~vr~Vsres~epvl~llqs~--d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmmtd 138 (550)
T KOG4224|consen 62 NLQRSAALAFAEITEKGVRRVSRESNEPVLALLQSC--DKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMMTD 138 (550)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCc--chhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhcCC
Confidence 44454444 23344444444444455555556643 33444446777888876 566888899999999888777777
Q ss_pred CCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHH
Q 002999 208 SKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLL 287 (859)
Q Consensus 208 ~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~L 287 (859)
.. ++|..++.++.+|+..++||..|+..|++.+++++-++.+..++.++..+|.+|+...++++.+.. .|++|.|
T Consensus 139 ~v----evqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~-aG~lpvL 213 (550)
T KOG4224|consen 139 GV----EVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH-AGGLPVL 213 (550)
T ss_pred Cc----EEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc-cCCchhh
Confidence 66 899999999999999999999999999999999998999999999999999999999999999984 9999999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcC--ChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhh
Q 002999 288 SSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAG--RFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQC 365 (859)
Q Consensus 288 v~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G--~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~g 365 (859)
|.+++ ++|++++..++.++.|++....+|+.++++| .||.||.++.++++.++.+|+.+|+|++.+.+.+..|.+.|
T Consensus 214 Vsll~-s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag 292 (550)
T KOG4224|consen 214 VSLLK-SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAG 292 (550)
T ss_pred hhhhc-cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcC
Confidence 99999 9999999999999999999999999999998 99999999999999999999999999999999987777655
Q ss_pred -HHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccc
Q 002999 366 -AKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWEL 442 (859)
Q Consensus 366 -i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 442 (859)
+|.+|++|+ .-....+...|++|++.++-|...|.++|.+.+|+++|+. .++.+++-+|..+|+||+...+....
T Consensus 293 ~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~--~dnEeiqchAvstLrnLAasse~n~~ 370 (550)
T KOG4224|consen 293 SLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA--GDNEEIQCHAVSTLRNLAASSEHNVS 370 (550)
T ss_pred CchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhc--CCchhhhhhHHHHHHHHhhhhhhhhH
Confidence 799999999 4455667788999999999999999999999999999976 34567999999999999996654443
Q ss_pred cccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHH
Q 002999 443 ASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAF 522 (859)
Q Consensus 443 ~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 522 (859)
.+...|+|+.+..|+.++.-++|.....++..|+.+... +..+.+.|.++.|+.++.+.+.+++.+|+
T Consensus 371 --------~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~----k~~lld~gi~~iLIp~t~s~s~Ev~gNaA 438 (550)
T KOG4224|consen 371 --------VIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND----KEALLDSGIIPILIPWTGSESEEVRGNAA 438 (550)
T ss_pred --------HHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc----HHHHhhcCCcceeecccCccchhhcccHH
Confidence 578899999999999999889999999999999887644 56678999999999999999999999999
Q ss_pred HHHHHHhhhccH--HHHHhcCCC--CchHHHHHhhccCCCchhHHHHHHHHHHHhcCC-cHHHHHHHH
Q 002999 523 RLTRILSERIGQ--DLAYALKPF--DKLVLFKDKILDNQSANCERSDAACILANIQLS-EEEVKTLLE 585 (859)
Q Consensus 523 ~~L~~Ls~~~~~--~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~-~~~~~~l~~ 585 (859)
.+|.|++...++ .+++.+... |.-..|++++.+++. ..+..+.|.+-.|..+ +..+..+++
T Consensus 439 aAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~--tf~hia~wTI~qLle~h~~~~~~~i~ 504 (550)
T KOG4224|consen 439 AALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHEL--TFRHIARWTIQQLLEDHDLPLTAFIQ 504 (550)
T ss_pred HHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHhCCccHHHHHh
Confidence 999999843322 233333322 556789999999887 6777788887777653 344444444
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.6e-29 Score=269.87 Aligned_cols=411 Identities=17% Similarity=0.220 Sum_probs=341.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHhcCCCc--ChHHHHhcCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCCccH--
Q 002999 284 LVLLSSMTGNLELPALSNLADEVFKKMERIEE--IVQPLAAAGRFEPLINRLC-QGSDNVQIEMAFLVGKLTLTNSCK-- 358 (859)
Q Consensus 284 i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~--~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~la~~~~~~-- 358 (859)
.+.++..+. ++++..+..+...++.|.+.+. ....+...|.||.||..|. ..++.++.+|||+|.|+|.....+
T Consensus 68 ~~~~~~~~~-S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALY-SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHh-CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 566667777 8888888888888888876544 3456777799999999996 556999999999999999876553
Q ss_pred HHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 359 EHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 359 ~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
..+..+++|.++++|. +..+++.|+|||.|++.+. ..|..+++.|++++|+.++.. ........++.|+|.|||.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~--~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK--SDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc--ccchHHHHHHHHHHHHHHc
Confidence 3334556899999999 8899999999999999988 668999999999999999965 2335789999999999999
Q ss_pred CCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCCh
Q 002999 436 NPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEV 515 (859)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 515 (859)
+...... .-.-..+++.|..++.+.++++...++|+|++|+.++.. ..+.+.+.|.++.|+.+|.+.+.
T Consensus 225 gk~P~P~--------~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne---~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 225 GKNPSPP--------FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE---KIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred CCCCCCc--------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH---HHHHHHHccchHHHHHHHcCCCc
Confidence 8853332 123356899999999999999999999999999987642 34778899999999999999999
Q ss_pred hHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHHhccHHHHHH
Q 002999 516 EHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLEATFIKWIVI 594 (859)
Q Consensus 516 ~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~g~v~~L~~ 594 (859)
.++..|+++++|++ ..++.....+...|+++.|..++..+.. ...+..|+|+|+|++.++... ++++++|.+|.|++
T Consensus 294 ~v~~PaLRaiGNIv-tG~d~QTq~vi~~~~L~~l~~ll~~s~~-~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 294 KVVTPALRAIGNIV-TGSDEQTQVVINSGALPVLSNLLSSSPK-ESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred ccccHHHhhcccee-eccHHHHHHHHhcChHHHHHHHhccCcc-hhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH
Confidence 99999999999998 5556666777888999999999995554 268889999999999998765 99999999999999
Q ss_pred HHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcc
Q 002999 595 TLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGR 674 (859)
Q Consensus 595 lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 674 (859)
+|+... -.+++.+++++.+++.+.+++....+.+.|+|+.|..+|.-. +..+...+-.+|.++-.-++
T Consensus 372 ~l~~~e-----------f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 372 LLQTAE-----------FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHhccc-----------hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHHHHHH
Confidence 998732 235788999999999998899999999999999999999775 88888888889998876554
Q ss_pred cccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhh
Q 002999 675 SLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLI 754 (859)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 754 (859)
...... + ......+-++|++..+=.|-.+++.++...|...+.+..
T Consensus 440 ~~~~~~-------------------------------~---n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 440 AEKNRG-------------------------------T---NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred Hhcccc-------------------------------c---cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhc
Confidence 322110 0 012345668999999999999999999999999999998
Q ss_pred hc
Q 002999 755 ID 756 (859)
Q Consensus 755 ~d 756 (859)
.+
T Consensus 486 ~~ 487 (514)
T KOG0166|consen 486 SE 487 (514)
T ss_pred CC
Confidence 76
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=2.4e-27 Score=236.23 Aligned_cols=412 Identities=13% Similarity=0.076 Sum_probs=327.0
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc--hHHHHHhhCchHHHHHHhcC-CCHHHHHHHHHHHHHhccChh
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE--SKKIMLEEGVTKSVIHSLIG-NSEKEKEYAVKLLLEFCIDEA 272 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~--~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~ 272 (859)
-+|.|..-|-|.+- +.+..|+.-.+.+.+-+. --+.+.++|++|.+|.+|.. ...-.+-+|+++|.|++....
T Consensus 72 elp~lt~~l~SdDi----e~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDI----EQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHH----HHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 35889998988877 888999888888766533 35677889999999999954 444557799999999999887
Q ss_pred hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC-cChHHHHhcCChHHHHHHhccCCh--HHHHHHHHHHH
Q 002999 273 YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIE-EIVQPLAAAGRFEPLINRLCQGSD--NVQIEMAFLVG 349 (859)
Q Consensus 273 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~--~~~~~aa~~L~ 349 (859)
...++..+.|++|.++.+|. +.+.++++.+.++|.|++.+. ..|..+.+.|+++|++.+|.+... .+..++.|+|.
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~-s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLS-STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred cceEEEEeCCchHHHHHHHc-CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 77777778999999999999 888999999999999999764 567789999999999999977655 67789999999
Q ss_pred HhcCCC--ccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHH
Q 002999 350 KLTLTN--SCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKE 424 (859)
Q Consensus 350 ~la~~~--~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~ 424 (859)
||+.+. .-........+|.|.+++. ++++.-.|+|||..|+..+ +....+++.|..+.|+++|.+ ++..++.
T Consensus 227 NlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~---~sa~iqt 303 (526)
T COG5064 227 NLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH---ESAKIQT 303 (526)
T ss_pred HhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC---ccccccC
Confidence 999854 2233344567899999998 9999999999999999988 667899999999999999965 5567889
Q ss_pred HHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHH
Q 002999 425 LAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIK 504 (859)
Q Consensus 425 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~ 504 (859)
.|+..+.|++.++..... .++..|+++.|..+|++....++..++|++.|++.++. +..+.+.+.+.+|
T Consensus 304 PalR~vGNIVTG~D~QTq--------viI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnt---eqiqavid~nliP 372 (526)
T COG5064 304 PALRSVGNIVTGSDDQTQ--------VIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNT---EQIQAVIDANLIP 372 (526)
T ss_pred HHHHhhcCeeecCcccee--------hheecccHHHHHHHhcChhhhhhhhhheeecccccCCH---HHHHHHHhcccch
Confidence 999999999998876553 68899999999999999888999999999999988864 3357889999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhh--ccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHH
Q 002999 505 YIIQFLEHPEVEHRTYAFRLTRILSER--IGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKT 582 (859)
Q Consensus 505 ~Lv~lL~~~~~~v~~~A~~~L~~Ls~~--~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~ 582 (859)
+|+.+|.+.+-.++..|||++.|.+.+ .-++..+.+.+.|+|.+|..+|.-.+. .+...++-++.|+-.....
T Consensus 373 pLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN--kiiev~LD~~eniLk~Ge~--- 447 (526)
T COG5064 373 PLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN--KIIEVALDAIENILKVGEQ--- 447 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc--cchhhhHHHHHHHHhhhhH---
Confidence 999999999999999999999999832 224556778888999999999987776 4444455555544331111
Q ss_pred HHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhH-HHHHhcCchHHHHHhhcCCChHHHHHH
Q 002999 583 LLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTL-GMVREQRLMTIFRDQLSFPSKARVKQL 661 (859)
Q Consensus 583 l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~~vk~~ 661 (859)
. +.....++..- ..+.++|++..+-.+-.+ ++..+-..
T Consensus 448 -------d---------------------------------~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s-~n~~iy~K 486 (526)
T COG5064 448 -------D---------------------------------RLRYGKNINIYAVYVEKAGGMDAIHGLQDS-VNRTIYDK 486 (526)
T ss_pred -------H---------------------------------HHhccCCccHHHHHHHhcccHHHHHHhhhc-cccHHHHH
Confidence 0 00111233222 234458888877666666 47778777
Q ss_pred HHHHhhhhhhh
Q 002999 662 AAHGLKNLSEA 672 (859)
Q Consensus 662 Aa~aL~~ls~~ 672 (859)
|=.-+..+...
T Consensus 487 AYsIIe~fFge 497 (526)
T COG5064 487 AYSIIEKFFGE 497 (526)
T ss_pred HHHHHHHHccc
Confidence 77777766543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=6.7e-24 Score=243.11 Aligned_cols=474 Identities=16% Similarity=0.197 Sum_probs=359.6
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHh-hCchHHHHHHhcCC---CHHHHHHHHHHHHHhccChh
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLE-EGVTKSVIHSLIGN---SEKEKEYAVKLLLEFCIDEA 272 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~-~g~i~~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~~~ 272 (859)
+...+++|-.+ . ..+..+...+..|+.+++|-+.++. .-.+..|.+.|+.+ +.+...+-+.+...+|...+
T Consensus 125 ~d~yiE~lYe~-~----~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~ 199 (708)
T PF05804_consen 125 LDEYIELLYED-I----PEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQ 199 (708)
T ss_pred HHHHHHHHhcc-c----HHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Confidence 45567777654 3 4577888999999999999777766 45788899999653 34444555555556655432
Q ss_pred hhhHhhhhhC------------------------------------------hHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 002999 273 YCKSVASEKG------------------------------------------ALVLLSSMTGNLELPALSNLADEVFKKM 310 (859)
Q Consensus 273 ~~~~i~~~~g------------------------------------------~i~~Lv~lL~~~~~~~~~~~a~~aL~nL 310 (859)
.-..+.. .. ....+-.+++ ....+...+...|.||
T Consensus 200 fH~~l~~-~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~--kQeqLlrv~~~lLlNL 276 (708)
T PF05804_consen 200 FHPILAH-YKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIR--KQEQLLRVAFYLLLNL 276 (708)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 2111110 00 0111122222 1234455677889999
Q ss_pred cCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhh-HHHHHHHhC--ChhHHHHHHHHHH
Q 002999 311 ERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQC-AKVLVELLS--KPAGRAASLKALY 387 (859)
Q Consensus 311 ~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~g-i~~Lv~lL~--~~~~~~~a~~aL~ 387 (859)
+.+..+..+|.+.|+|+.|+.+|.+++.++...+...|.+|+...+||..|.+.| +++|++++. +..++..++++|.
T Consensus 277 Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~ 356 (708)
T PF05804_consen 277 AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLF 356 (708)
T ss_pred hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998766 699999999 7889999999999
Q ss_pred HhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcC
Q 002999 388 NLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSG 467 (859)
Q Consensus 388 ~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~ 467 (859)
|||.+++.|..|++.|++|.|+.+|.. +..+..+..+|.||+.....+. .+...++++.+++++-.
T Consensus 357 NLSfd~~~R~~mV~~GlIPkLv~LL~d-----~~~~~val~iLy~LS~dd~~r~---------~f~~TdcIp~L~~~Ll~ 422 (708)
T PF05804_consen 357 NLSFDPELRSQMVSLGLIPKLVELLKD-----PNFREVALKILYNLSMDDEARS---------MFAYTDCIPQLMQMLLE 422 (708)
T ss_pred HhCcCHHHHHHHHHCCCcHHHHHHhCC-----CchHHHHHHHHHHhccCHhhHH---------HHhhcchHHHHHHHHHh
Confidence 999999999999999999999999953 2456789999999999887665 46677899999997644
Q ss_pred -CChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCch
Q 002999 468 -VSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKL 546 (859)
Q Consensus 468 -~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i 546 (859)
+++.+...+++.+.|||.++.+ .+.+.+.||++.|+...-.....+ ..++++|+|.+. ......+. +.+
T Consensus 423 ~~~~~v~~eliaL~iNLa~~~rn----aqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~-~~~k~~f~--~~i 492 (708)
T PF05804_consen 423 NSEEEVQLELIALLINLALNKRN----AQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHD-GPLKELFV--DFI 492 (708)
T ss_pred CCCccccHHHHHHHHHHhcCHHH----HHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcC-chHHHHHH--HHH
Confidence 5567777889999999999765 356778899999998764433322 347999999554 33444443 699
Q ss_pred HHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHH-HhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhc
Q 002999 547 VLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLL-EATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHF 625 (859)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~-~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~ 625 (859)
..|+.++..+++ .+....+.|+|+||+..+.....++ +.+.+|++.+.|..... ..+++-.++-.+..+
T Consensus 493 ~~L~~~v~~~~~-ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~---------~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 493 GDLAKIVSSGDS-EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS---------EDDLLLEVVILLGTL 562 (708)
T ss_pred HHHHHHhhcCCc-HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC---------ChHHHHHHHHHHHHH
Confidence 999999998876 5888999999999998776664454 57999999999975211 112333334344433
Q ss_pred ccCCChhhHHHHHhcCchHHHHHhhcCC-ChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCC
Q 002999 626 TRSVNPQTLGMVREQRLMTIFRDQLSFP-SKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEP 704 (859)
Q Consensus 626 ~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (859)
+ .++.....+.+.|+++.|+++|+.. .+++...+...++.+|..+......
T Consensus 563 a--~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~-------------------------- 614 (708)
T PF05804_consen 563 A--SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREV-------------------------- 614 (708)
T ss_pred H--CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHH--------------------------
Confidence 3 4889999999999999999999885 2678888889998888766432111
Q ss_pred CCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhc
Q 002999 705 TTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIID 756 (859)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d 756 (859)
-+-+.+++.-|++++++.|.+|+..|-.+|-.++..
T Consensus 615 ----------------ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 615 ----------------LLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred ----------------HHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 122467889999999999999999999999998865
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=2.9e-22 Score=229.69 Aligned_cols=514 Identities=16% Similarity=0.159 Sum_probs=395.1
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc--CCCChHHHHHHHHHHHHhcCCCcChH
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG--NLELPALSNLADEVFKKMERIEEIVQ 318 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~~a~~aL~nL~~~~~~~~ 318 (859)
-+...+.+|-.+ ...+..++..+..|+.++++-+.+....-.+.+|.+.|+ ...+.++..+.+.+...+|...+...
T Consensus 124 ~~d~yiE~lYe~-~~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~ 202 (708)
T PF05804_consen 124 DLDEYIELLYED-IPEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHP 202 (708)
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 356667777654 455778889999999999999999887889999999997 34577888888888999998888777
Q ss_pred HHHhcCChHHHHHHhccCChHHHHHHHHH--HHH---hcCCC-ccHHHHHHhhHHHHHHHhC-ChhHHHHHHHHHHHhhC
Q 002999 319 PLAAAGRFEPLINRLCQGSDNVQIEMAFL--VGK---LTLTN-SCKEHIARQCAKVLVELLS-KPAGRAASLKALYNLSG 391 (859)
Q Consensus 319 ~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~--L~~---la~~~-~~~~~i~~~gi~~Lv~lL~-~~~~~~~a~~aL~~Ls~ 391 (859)
.+.....-...++++.. +++..-.|. +.. .+... ..+... +...+.+-.+++ -..+...|...|.||+.
T Consensus 203 ~l~~~kiG~l~m~iie~---Elkr~~~w~~~l~~~~~~~~~~~~~~~~~-~~~~kk~~~l~~kQeqLlrv~~~lLlNLAe 278 (708)
T PF05804_consen 203 ILAHYKIGSLCMEIIEH---ELKRHDLWQEELRKKKKAAEEKPEAKKDY-EKELKKLQTLIRKQEQLLRVAFYLLLNLAE 278 (708)
T ss_pred HHHhccHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhccchhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77776555556666633 233322221 111 11111 111111 122345555666 55566788999999999
Q ss_pred CCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChH
Q 002999 392 LDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQ 471 (859)
Q Consensus 392 ~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~ 471 (859)
+..+...+.+.|+++.|+++|.+ .+..+...++..|.+|+...+++. .+...|+|++|++++.+.+.+
T Consensus 279 d~~ve~kM~~~~iV~~Lv~~Ldr---~n~ellil~v~fLkkLSi~~ENK~---------~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 279 DPRVELKMVNKGIVSLLVKCLDR---ENEELLILAVTFLKKLSIFKENKD---------EMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred ChHHHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHH---------HHHHcCCHHHHHHHhcCCCHH
Confidence 99999999999999999999975 457899999999999999988876 478899999999999999999
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHH
Q 002999 472 CQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKD 551 (859)
Q Consensus 472 ~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~ 551 (859)
++..++++|+||+.++. ++..|.+.|.+|.|+.+|.++ ..+..++.+|.+|| .+++.+..+..+++++.+++
T Consensus 347 l~~~aLrlL~NLSfd~~----~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS--~dd~~r~~f~~TdcIp~L~~ 418 (708)
T PF05804_consen 347 LVNVALRLLFNLSFDPE----LRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLS--MDDEARSMFAYTDCIPQLMQ 418 (708)
T ss_pred HHHHHHHHHHHhCcCHH----HHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhc--cCHhhHHHHhhcchHHHHHH
Confidence 99999999999999964 578899999999999999764 45677899999997 46677788888899999999
Q ss_pred hhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCCh
Q 002999 552 KILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNP 631 (859)
Q Consensus 552 lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~ 631 (859)
++-+... ..+...++.++.||+.+....+.+.+.|+++.|+......+. .-++..+.+++.. ++
T Consensus 419 ~Ll~~~~-~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D--------------~lLlKlIRNiS~h-~~ 482 (708)
T PF05804_consen 419 MLLENSE-EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD--------------PLLLKLIRNISQH-DG 482 (708)
T ss_pred HHHhCCC-ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc--------------HHHHHHHHHHHhc-Cc
Confidence 8777654 366778899999999977777888998999988877654211 1234566777654 33
Q ss_pred hhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCC
Q 002999 632 QTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHN 711 (859)
Q Consensus 632 ~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (859)
..+..+. +.|..|+.++..+.+++....+...|+||+..+.+..
T Consensus 483 ~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~---------------------------------- 526 (708)
T PF05804_consen 483 PLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWA---------------------------------- 526 (708)
T ss_pred hHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHH----------------------------------
Confidence 4555554 4688888888875478899899999998875432111
Q ss_pred CCCCcCCcchhhhcCCchHHHhhhccC--ChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcC-chh
Q 002999 712 TPCEDDSQLCLLKSNCIKPLVDLLAEE--DTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVR-PGL 788 (859)
Q Consensus 712 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~ 788 (859)
..+-+.+.++-|.++|..+ +++++..++..+++++.| . .....+++.|-++.|+++|.+.. |++
T Consensus 527 --------~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d----~-~~A~lL~~sgli~~Li~LL~~kqeDdE 593 (708)
T PF05804_consen 527 --------QLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD----P-ECAPLLAKSGLIPTLIELLNAKQEDDE 593 (708)
T ss_pred --------HHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC----H-HHHHHHHhCChHHHHHHHHHhhCchHH
Confidence 1122467899999999754 557888888999999987 2 44678889999999999998533 577
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002999 789 LQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLKQ 844 (859)
Q Consensus 789 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 844 (859)
+--..+.+|.++..+++.+..+....+++.-|++++++.|+.+|+.+-.+|-=+..
T Consensus 594 ~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 594 IVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88888999999999998888877777788999999999999999999998876654
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.86 E-value=8.9e-20 Score=203.81 Aligned_cols=353 Identities=15% Similarity=0.101 Sum_probs=285.0
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccChh-hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC---CcC
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEA-YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI---EEI 316 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~---~~~ 316 (859)
-+|..+.+|.+.++..+.+|+..|..++..+. .+..+ ..-|+|+.||.+|. +.+.+++..|+++|+||... ++|
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~v-rqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRV-RQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHH-HHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhcccCCccc
Confidence 58889999999999999999999999998765 45554 56899999999999 89999999999999999843 468
Q ss_pred hHHHHhcCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---C-------------hhHH
Q 002999 317 VQPLAAAGRFEPLINRLCQ-GSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---K-------------PAGR 379 (859)
Q Consensus 317 ~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~-------------~~~~ 379 (859)
+..|.+.++|+.++++|+. .+.+++++.+.+|+||+.+|..|..+...+...|..-+- + ..+-
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 9999999999999999975 899999999999999999998899998888877766332 2 3455
Q ss_pred HHHHHHHHHhhCCC-cchHHHHH-cCcHHHHHHHHhc---cCCCCHHHHHHHHHHHHHhhcCCC----------------
Q 002999 380 AASLKALYNLSGLD-DNATILVD-SALLPALTDILFK---SHDASPELKELAAATIANVVSNPG---------------- 438 (859)
Q Consensus 380 ~~a~~aL~~Ls~~~-~~~~~i~~-~G~i~~Lv~lL~~---~~~~~~~~~~~a~~~L~nL~~~~~---------------- 438 (859)
.++++||+|+++.. +.|+.+.+ .|.|..|+..+++ ..+.+....|+|..+|.||+-.-+
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 77999999999955 88999988 5999999999885 245667889999999999964322
Q ss_pred -----c-------cc-----------------ccccccccCcccccchHHHHHHhhc-CCChHHHHHHHHHHHHhccCC-
Q 002999 439 -----C-------WE-----------------LASADKLGHSMQSESIVSSLLGLLS-GVSPQCQVSTLRILCGIASSP- 487 (859)
Q Consensus 439 -----~-------~~-----------------~~~~~~~~~~l~~~~~i~~Ll~LL~-~~~~~~~~~a~~aL~~La~~~- 487 (859)
. +. .....++-..+....+|..-+.||. +.++.+.+.++.+|-|++...
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0 00 0001122234666677777666664 456789999999999998752
Q ss_pred hhHHHHHHHH-hhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCC----chhH
Q 002999 488 QAAESVATHI-KSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQS----ANCE 562 (859)
Q Consensus 488 ~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~----~~~~ 562 (859)
.....++..+ .+..|++.|+.+|+.+++.+...++.+|+||+ .+..+++.|. .++++.||+.|..+.. ..++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls--~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS--RDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc--cCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHH
Confidence 2233455555 88999999999999999999999999999997 4556666676 4899999999987754 2356
Q ss_pred HHHHHHHHHHhcCCcHHH-HHHHHhccHHHHHHHHhh
Q 002999 563 RSDAACILANIQLSEEEV-KTLLEATFIKWIVITLQT 598 (859)
Q Consensus 563 ~~~A~~~L~~L~~~~~~~-~~l~~~g~v~~L~~lL~~ 598 (859)
...++.+|.|+...+... +.+.+.++++.|+.+..+
T Consensus 629 v~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence 678899999999777776 999999999999888766
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=6e-19 Score=197.24 Aligned_cols=398 Identities=14% Similarity=0.111 Sum_probs=298.6
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-- 229 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-- 229 (859)
.++..+++|.+..+ .++..|...|+.+|.++...|..+.+.|+|+.||.+|.+.+. +++..|+++|+||...
T Consensus 234 ~lpe~i~mL~~q~~--~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~----evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 234 TLPEVISMLMSQDP--SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND----EVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccHHHHHHHhccCh--hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH----HHHHHHHHHHHhhhcccC
Confidence 47788888885443 333458889999999999999999999999999999999998 9999999999999987
Q ss_pred -cchHHHHHhhCchHHHHHHhcC-CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc--CC-------C---
Q 002999 230 -EESKKIMLEEGVTKSVIHSLIG-NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG--NL-------E--- 295 (859)
Q Consensus 230 -~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~~-------~--- 295 (859)
++||-.|.+.++|+.++++|+. +|.++++..+.+||||+..+..+..|. ..+++.|..-+- ++ .
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii--~~al~tLt~~vI~P~Sgw~~~~~~~~~ 385 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLII--TSALSTLTDNVIIPHSGWEEEPAPRKA 385 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH--HHHHHHHHHhhcccccccCCCCccccc
Confidence 5699999999999999999996 788999999999999999988888886 347888877654 22 1
Q ss_pred -ChHHHHHHHHHHHHhcC-CCcChHHHHhc-CChHHHHHHhc------cCChHHHHHHHHHHHHhcCCCc--c----HHH
Q 002999 296 -LPALSNLADEVFKKMER-IEEIVQPLAAA-GRFEPLINRLC------QGSDNVQIEMAFLVGKLTLTNS--C----KEH 360 (859)
Q Consensus 296 -~~~~~~~a~~aL~nL~~-~~~~~~~i~~~-G~i~~Lv~lL~------~~~~~~~~~aa~~L~~la~~~~--~----~~~ 360 (859)
+.++..++..+|+|+++ ..+.|++|.+. |.|..|+..++ .-+....+++...|.|++..-+ . +..
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~ 465 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV 465 (717)
T ss_pred ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence 35678899999999997 67889999986 99999999885 3456778899999999986321 1 111
Q ss_pred HHHhhHHHHHHHhCChhHHHHHHHHHHHhhC----------------CCcchHHHHHcCcHHHHHHHHhccCCCCHHHHH
Q 002999 361 IARQCAKVLVELLSKPAGRAASLKALYNLSG----------------LDDNATILVDSALLPALTDILFKSHDASPELKE 424 (859)
Q Consensus 361 i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~----------------~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~ 424 (859)
+.+.+.-..+. .+ ....+|+..-.. .+..-..+...-+|.+-+.+|.. .....+.|
T Consensus 466 ~~~~~~~~~~~---~~---~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~--s~n~~TlE 537 (717)
T KOG1048|consen 466 LANIARLPGVG---PP---AESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL--SKNDNTLE 537 (717)
T ss_pred hhcccccccCC---Cc---ccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH--hcchHHHH
Confidence 11110000000 00 011111111111 11112234444566666666653 34578999
Q ss_pred HHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHH
Q 002999 425 LAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIK 504 (859)
Q Consensus 425 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~ 504 (859)
.++++|-||+.....+.... .+..+..+.+.+.|+.||..+++.+...++.+|.||+.+..+ +..|. .++++
T Consensus 538 asaGaLQNltA~~~~~~~~~---~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn----k~lig-k~a~~ 609 (717)
T KOG1048|consen 538 ASAGALQNLTAGLWTWSEYM---RGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN----KELIG-KYAIP 609 (717)
T ss_pred HhhhhHhhhhccCCcchhHH---HhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh----hhhhh-cchHH
Confidence 99999999999887766431 222346788899999999999999999999999999999765 34443 78999
Q ss_pred HHHHhhcCCC------hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 505 YIIQFLEHPE------VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 505 ~Lv~lL~~~~------~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
.|++.|.... .++...++..|.++. ..+-+.+..+.+.++++.|+.+..+..+ ..+..+|..+|..|=.
T Consensus 610 ~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv-~~~~~nAkdl~~~~g~~kL~~I~~s~~S-~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 610 DLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV-RKNVLNAKDLLEIKGIPKLRLISKSQHS-PKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHhCcCCCCCcCchHHHHHHHHHhHHHHH-HHhHHHHHHHHhccChHHHHHHhcccCC-HHHHHHHHHHHHHHHH
Confidence 9999986654 367788899999998 4566778889999999999999999665 4666666666666644
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.82 E-value=6.9e-21 Score=155.92 Aligned_cols=71 Identities=46% Similarity=0.805 Sum_probs=60.7
Q ss_pred CCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhcc
Q 002999 74 FKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 74 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
|++|+||||+++|+|||++++||||||++|++|+.. + +.+||+|+++++..+++||..||+.|++|+.+|.
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~----~-~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ----N-GGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT----T-SSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc----C-CCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 367999999999999999999999999999999987 2 5799999999999999999999999999999874
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.2e-15 Score=153.33 Aligned_cols=311 Identities=14% Similarity=0.180 Sum_probs=249.1
Q ss_pred cCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhccc-CcchHHHHHhhC
Q 002999 162 KENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAK-DEESKKIMLEEG 240 (859)
Q Consensus 162 ~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~g 240 (859)
..+++...+.++|..|..+....| .+.++.+...++++|.....+. ++-...+..+..-+. ++.||+.+++.+
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~--dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESE--EVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchH--HHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 345666667778888888876544 4667788889999996543322 677777777766654 499999999999
Q ss_pred chHHHHHHhcCC-CHHHHHHHHHHHHHhccChh----------hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHH
Q 002999 241 VTKSVIHSLIGN-SEKEKEYAVKLLLEFCIDEA----------YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKK 309 (859)
Q Consensus 241 ~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~----------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~n 309 (859)
+++.+...|... ...+.+.+.++++-|..+++ ..+.|+. .|++..|+..++..-||.+...++.+|..
T Consensus 190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~ 268 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKA 268 (461)
T ss_pred HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 999999777654 44578889999999988764 3466664 67899999999956678999999999999
Q ss_pred hcCCCcChHHHHhcCChHHHHHHhccCC-hH---HHHHHHHHHHHhcCCCccHHHHHHhh-HHHHHHHhC----ChhHHH
Q 002999 310 MERIEEIVQPLAAAGRFEPLINRLCQGS-DN---VQIEMAFLVGKLTLTNSCKEHIARQC-AKVLVELLS----KPAGRA 380 (859)
Q Consensus 310 L~~~~~~~~~i~~~G~i~~Lv~lL~~~~-~~---~~~~aa~~L~~la~~~~~~~~i~~~g-i~~Lv~lL~----~~~~~~ 380 (859)
|+-.++.+..+++.|++..|+.++.+.+ .. ....+...|..|+.++++|..|.+.| .+.++.++- +|.+.+
T Consensus 269 lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~ 348 (461)
T KOG4199|consen 269 LAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQ 348 (461)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHH
Confidence 9999999999999999999999997633 33 44567788999999999999998755 588888664 899999
Q ss_pred HHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHH
Q 002999 381 ASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVS 459 (859)
Q Consensus 381 ~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~ 459 (859)
.++.++.-|+... ++...+++.|+-...++.|+.++ ....++.+|++.++|++.++.+... +.-..+++
T Consensus 349 ~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP-~~a~vQrnac~~IRNiv~rs~~~~~---------~~l~~GiE 418 (461)
T KOG4199|consen 349 EVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP-VAAQVQRNACNMIRNIVVRSAENRT---------ILLANGIE 418 (461)
T ss_pred HHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHhhhhccc---------hHHhccHH
Confidence 9999999999865 78889999999999999999854 2358899999999999999877664 33356788
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChh
Q 002999 460 SLLGLLSGVSPQCQVSTLRILCGIASSPQA 489 (859)
Q Consensus 460 ~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~ 489 (859)
.|+..-+..++.....+-.+|..|-.+...
T Consensus 419 ~Li~~A~~~h~tce~~akaALRDLGc~v~l 448 (461)
T KOG4199|consen 419 KLIRTAKANHETCEAAAKAALRDLGCDVYL 448 (461)
T ss_pred HHHHHHHhcCccHHHHHHHHHHhcCcchhh
Confidence 899888888888887788888888776543
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=2.7e-16 Score=181.65 Aligned_cols=346 Identities=17% Similarity=0.181 Sum_probs=266.1
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCc---hHHHHHH
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGV---TKSVIHS 248 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~---i~~Lv~l 248 (859)
..+.+..+.. +++.-..++..|.+|.|+++|...+.+ +.+.+..|-.+|+|+... ++-+..=.+..+ +..+..+
T Consensus 214 ~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~-~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraY 291 (2195)
T KOG2122|consen 214 MARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDE-DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAY 291 (2195)
T ss_pred HHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchh-hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 5566665544 666777889999999999999765431 238899999999999887 333222222222 3322222
Q ss_pred h-------cCCC-------HHHH-HHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc-C-------CC---ChHHHHH
Q 002999 249 L-------IGNS-------EKEK-EYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG-N-------LE---LPALSNL 302 (859)
Q Consensus 249 L-------~~~~-------~~~~-~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~-------~~---~~~~~~~ 302 (859)
. ..+. .+-+ ..|+.+|..++.+++++..+. +-|++.++-.||. . .+ ...++..
T Consensus 292 C~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~-ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrY 370 (2195)
T KOG2122|consen 292 CETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMN-ELGGLQAIAELLQVDHEMHGPETNDGECNALRRY 370 (2195)
T ss_pred HHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 2 1111 1222 378889999999999999997 4898888888776 1 11 2367899
Q ss_pred HHHHHHHhcCCC-cChHHHH-hcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC--ccHHHHHHhh-HHHHHH-HhC--
Q 002999 303 ADEVFKKMERIE-EIVQPLA-AAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN--SCKEHIARQC-AKVLVE-LLS-- 374 (859)
Q Consensus 303 a~~aL~nL~~~~-~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~--~~~~~i~~~g-i~~Lv~-lL~-- 374 (859)
|..+|-||...+ .|+..+. ..|.|..+|..|.+.++++..-.|.+|.||+... ..|+.+.+-| +..|+. .|+
T Consensus 371 a~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~ 450 (2195)
T KOG2122|consen 371 AGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK 450 (2195)
T ss_pred HHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc
Confidence 999999999654 5666555 5699999999999999999999999999999754 3377777777 677776 445
Q ss_pred ChhHHHHHHHHHHHhhCCC-cchHHHHH-cCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCc
Q 002999 375 KPAGRAASLKALYNLSGLD-DNATILVD-SALLPALTDILFKS-HDASPELKELAAATIANVVSNPGCWELASADKLGHS 451 (859)
Q Consensus 375 ~~~~~~~a~~aL~~Ls~~~-~~~~~i~~-~G~i~~Lv~lL~~~-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 451 (859)
.+...++.+.|||||+.+. +|+..|.. -|++..||.+|... ......+.+.|-++|.|++..-..+.. .++.
T Consensus 451 kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~-----yRQI 525 (2195)
T KOG2122|consen 451 KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED-----YRQI 525 (2195)
T ss_pred ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch-----HHHH
Confidence 6678889999999999987 89999988 59999999999752 124568889999999998776544332 3346
Q ss_pred ccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 452 MQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 452 l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
+.+.+.+..|+.+|++.+-.+..+++++||||..... +-++.+++.|+++.|..|+.+.+..+-+.++.+|.||.
T Consensus 526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p---~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP---EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCH---HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 7788899999999999988899999999999976542 23688999999999999999999999999999999997
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.4e-15 Score=151.11 Aligned_cols=345 Identities=15% Similarity=0.149 Sum_probs=262.1
Q ss_pred HHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhc---CCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhc
Q 002999 174 LDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKS---SSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLI 250 (859)
Q Consensus 174 l~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~ 250 (859)
+..|..-|+.+..+|..-...|..+.++-++.. ++. .+...++.+|..+... ...+.++.++..++++|.
T Consensus 83 l~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~----~~l~ksL~al~~lt~~---qpdl~da~g~~vvv~lL~ 155 (461)
T KOG4199|consen 83 LEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNE----SVLKKSLEAINSLTHK---QPDLFDAEAMAVVLKLLA 155 (461)
T ss_pred HHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCch----hHHHHHHHHHHHhhcC---CcchhccccHHHHHHHHh
Confidence 444555555566667777778888888777654 344 7788888888887665 234556778899999986
Q ss_pred C--CCHHHHHHHHHHHHHhccChh-hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcC----------h
Q 002999 251 G--NSEKEKEYAVKLLLEFCIDEA-YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEI----------V 317 (859)
Q Consensus 251 ~--~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~----------~ 317 (859)
. ++.++.......+..-+...+ +++.+. +.++++.+...|...+...+...+.++++-|...++. -
T Consensus 156 ~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m-~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hA 234 (461)
T KOG4199|consen 156 LKVESEEVTLLTLQWLQKACIMHEVNRQLFM-ELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHA 234 (461)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHHHHHHH-HhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHH
Confidence 4 445666666667776666555 555554 6899999998887444447888899999999877653 2
Q ss_pred HHHHhcCChHHHHHHhccC-ChHHHHHHHHHHHHhcCCCccHHHHHH-hhHHHHHHHhC--C----hhHHHHHHHHHHHh
Q 002999 318 QPLAAAGRFEPLINRLCQG-SDNVQIEMAFLVGKLTLTNSCKEHIAR-QCAKVLVELLS--K----PAGRAASLKALYNL 389 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~la~~~~~~~~i~~-~gi~~Lv~lL~--~----~~~~~~a~~aL~~L 389 (859)
+.|+..|+...|++.|..+ ++++......+|..|+..++-+..|.+ +|+..|++++. + ....+.++..|+.|
T Consensus 235 r~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 235 RTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence 4677889999999999654 477888889999999999999888876 55799999998 2 23556789999999
Q ss_pred hCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCC-
Q 002999 390 SGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGV- 468 (859)
Q Consensus 390 s~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~- 468 (859)
+..+.++..|++.|+.+.++.++..+. .++.+.+.++.++.-||...+.... .+++.|+-...++-++..
T Consensus 315 AG~DsvKs~IV~~gg~~~ii~l~~~h~-~~p~Vi~~~~a~i~~l~LR~pdhsa--------~~ie~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 315 AGSDSVKSTIVEKGGLDKIITLALRHS-DDPLVIQEVMAIISILCLRSPDHSA--------KAIEAGAADLAVQAMKAHP 385 (461)
T ss_pred hCCCchHHHHHHhcChHHHHHHHHHcC-CChHHHHHHHHHHHHHHhcCcchHH--------HHHhcchHHHHHHHHHhCc
Confidence 999999999999999999999988754 4568889999999999988877664 456677767777766543
Q ss_pred -ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcC
Q 002999 469 -SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALK 541 (859)
Q Consensus 469 -~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~ 541 (859)
...+|.+++|.+.||....... ++ +.=..|+..|+......++..+..|..+|+-|- .+.++++...
T Consensus 386 ~~a~vQrnac~~IRNiv~rs~~~---~~-~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG--c~v~lre~wt 453 (461)
T KOG4199|consen 386 VAAQVQRNACNMIRNIVVRSAEN---RT-ILLANGIEKLIRTAKANHETCEAAAKAALRDLG--CDVYLREEWT 453 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc---cc-hHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC--cchhhHHHhc
Confidence 2389999999999998775432 22 334579999999999999999999999999994 4455555544
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=1.8e-15 Score=175.04 Aligned_cols=359 Identities=16% Similarity=0.116 Sum_probs=273.2
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCC---CHHHHHHHHHHHHHhccCh-hhh
Q 002999 199 LIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGN---SEKEKEYAVKLLLEFCIDE-AYC 274 (859)
Q Consensus 199 ~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~~-~~~ 274 (859)
.|+.+|...+ ++.-.+.+..++..++....++..|+++.|+.+|... +.+.+..|-.+|+|+..+. +.+
T Consensus 201 sllsml~t~D-------~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 201 SLLSMLGTDD-------EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred HHhhhcccCC-------HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 4555555544 3666778888899988899999999999999999754 4678899999999998763 211
Q ss_pred hHhhhhhChHHHHH----------Hhhc-CC------CChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhcc--
Q 002999 275 KSVASEKGALVLLS----------SMTG-NL------ELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQ-- 335 (859)
Q Consensus 275 ~~i~~~~g~i~~Lv----------~lL~-~~------~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~-- 335 (859)
..= ++..+++.|- .++. .. .+.--.-.|+.+|..++.+++.|..|.+.|++..+-+||..
T Consensus 274 r~R-RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh 352 (2195)
T KOG2122|consen 274 RGR-REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDH 352 (2195)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 100 1112333332 2333 00 11112236788899999999999999999999999998742
Q ss_pred ---C-------ChHHHHHHHHHHHHhcCCCc-cHHHH-HHhh-HHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cc-hHH
Q 002999 336 ---G-------SDNVQIEMAFLVGKLTLTNS-CKEHI-ARQC-AKVLVELLS--KPAGRAASLKALYNLSGLD-DN-ATI 398 (859)
Q Consensus 336 ---~-------~~~~~~~aa~~L~~la~~~~-~~~~i-~~~g-i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~-~~~ 398 (859)
+ ...++.+++.+|.||.+++. ||..+ ...| +..+|..|. ..++...-+.+|+||+=.. .| ++.
T Consensus 353 ~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkv 432 (2195)
T KOG2122|consen 353 EMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKV 432 (2195)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHH
Confidence 2 24688999999999999774 47666 4444 699999888 5589999999999999765 34 677
Q ss_pred HHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCC----ChHHHH
Q 002999 399 LVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGV----SPQCQV 474 (859)
Q Consensus 399 i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~----~~~~~~ 474 (859)
+.+.|-+..|+..-... .........+.+||||+.|...... ......|++..|+.+|.-. .-.+.+
T Consensus 433 LrE~GsVtaLa~~al~~--~kEsTLKavLSALWNLSAHcteNKA-------~iCaVDGALaFLVg~LSY~~qs~tLaIIE 503 (2195)
T KOG2122|consen 433 LRETGSVTALAACALRN--KKESTLKAVLSALWNLSAHCTENKA-------EICAVDGALAFLVGTLSYEGQSNTLAIIE 503 (2195)
T ss_pred HHhhhhHHHHHHHHHHh--cccchHHHHHHHHhhhhhcccccch-------hhhcccchHHHHHhhccccCCcchhhhhh
Confidence 78899999998875432 2235667899999999998754332 1345678999999999755 237888
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhc
Q 002999 475 STLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKIL 554 (859)
Q Consensus 475 ~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~ 554 (859)
.+-++|.|.++.-.+.+..++.+++.+.+..|++.|++.+-.+..++|.+|+||+ ..+.+-++.|.+.|+++.|..++.
T Consensus 504 saGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLS-AR~p~DQq~LwD~gAv~mLrnLIh 582 (2195)
T KOG2122|consen 504 SAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLS-ARSPEDQQMLWDDGAVPMLRNLIH 582 (2195)
T ss_pred cCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhh-cCCHHHHHHHHhcccHHHHHHHHh
Confidence 8999999998775555677899999999999999999999999999999999999 455666788999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHhcCCc
Q 002999 555 DNQSANCERSDAACILANIQLSE 577 (859)
Q Consensus 555 ~~~~~~~~~~~A~~~L~~L~~~~ 577 (859)
+.+. .+..-++.+|.||-.+.
T Consensus 583 SKhk--MIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 583 SKHK--MIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhh--hhhhhHHHHHHHHhcCC
Confidence 9887 67777888888886544
No 18
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.67 E-value=9.3e-14 Score=143.92 Aligned_cols=395 Identities=14% Similarity=0.123 Sum_probs=287.3
Q ss_pred CccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCC-C--cchHHHHHHHHHHHhcccC-cchHHHHHhhC
Q 002999 165 PEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSK-S--VGTILRSKALMALLSMAKD-EESKKIMLEEG 240 (859)
Q Consensus 165 ~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~-~--~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g 240 (859)
++.+...+..|.|.++|..+.++|..+.+.|+-..+++.|+.... + ...+.-..+...|.|...+ ++.+.++++.|
T Consensus 99 ~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~g 178 (604)
T KOG4500|consen 99 PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAG 178 (604)
T ss_pred CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcc
Confidence 455666679999999999999999999999998888888865311 1 1114455566788888777 78899999999
Q ss_pred chHHHHHHhcCC--CHHHHHHHHHHHHHhcc-ChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh
Q 002999 241 VTKSVIHSLIGN--SEKEKEYAVKLLLEFCI-DEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV 317 (859)
Q Consensus 241 ~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~ 317 (859)
.++.|...+.-+ +....+.......+|.. ..++......+......|++++...-+++..+-..++|...+.++..+
T Consensus 179 Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk 258 (604)
T KOG4500|consen 179 VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK 258 (604)
T ss_pred cHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee
Confidence 999999988644 33333444333333322 223233333456788889999886677888888999999999999999
Q ss_pred HHHHhcCChHHHHHHhcc-CCh----H---HHHHHHHHHHHhcCCCccHHHHHHhh--HHHHHHHhC--ChhHHHHHHHH
Q 002999 318 QPLAAAGRFEPLINRLCQ-GSD----N---VQIEMAFLVGKLTLTNSCKEHIARQC--AKVLVELLS--KPAGRAASLKA 385 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~-~~~----~---~~~~aa~~L~~la~~~~~~~~i~~~g--i~~Lv~lL~--~~~~~~~a~~a 385 (859)
-.+++.|.+..++++++. ... + .-..++....-+..+++.-..+..++ ...++..++ +......+.-+
T Consensus 259 l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~La 338 (604)
T KOG4500|consen 259 LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLA 338 (604)
T ss_pred eehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999964 221 1 22223333444444555544444333 477888887 77889999999
Q ss_pred HHHhhCCCcchHHHHHcCcHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHH
Q 002999 386 LYNLSGLDDNATILVDSALLPALTDILFKS--HDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLG 463 (859)
Q Consensus 386 L~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~ 463 (859)
|.|+++.+.++..+++.|.+..|+++|... .+++...+-.++.+|+|+..--+++. .+...|+++.++.
T Consensus 339 igNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka---------~~~~aGvteaIL~ 409 (604)
T KOG4500|consen 339 IGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKA---------HFAPAGVTEAILL 409 (604)
T ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchh---------hccccchHHHHHH
Confidence 999999999999999999999999998762 34567888899999999998777776 4788999999999
Q ss_pred hhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHHHhhCCCHHHHHHhhcCCChh-HHHHHHHHHHHHhhh-ccHHHHHhc
Q 002999 464 LLSGVSPQCQVSTLRILCGIASSPQ-AAESVATHIKSGDGIKYIIQFLEHPEVE-HRTYAFRLTRILSER-IGQDLAYAL 540 (859)
Q Consensus 464 LL~~~~~~~~~~a~~aL~~La~~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-v~~~A~~~L~~Ls~~-~~~~~~~~l 540 (859)
.++...|.++...+.+|.-+-...+ .. .+....-..+..|+..-++++.. +-..+.++|..+.++ ...++...+
T Consensus 410 ~lk~~~ppv~fkllgTlrM~~d~qe~~a---~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tv 486 (604)
T KOG4500|consen 410 QLKLASPPVTFKLLGTLRMIRDSQEYIA---CELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTV 486 (604)
T ss_pred HHHhcCCcchHHHHHHHHHHHhchHHHH---HHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhc
Confidence 9999999999998888876654422 11 11122223467788888888764 666777777777643 134566788
Q ss_pred CCCCchHHHHHhhccCCCchhHHHHHHHHHHHh
Q 002999 541 KPFDKLVLFKDKILDNQSANCERSDAACILANI 573 (859)
Q Consensus 541 ~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L 573 (859)
.++|+|+.+|.++....- ..+..|+-+|..+
T Consensus 487 pksg~ik~~Vsm~t~~hi--~mqnEalVal~~~ 517 (604)
T KOG4500|consen 487 PKSGGIKEKVSMFTKNHI--NMQNEALVALLST 517 (604)
T ss_pred cccccHHHHHHHHHHhhH--HHhHHHHHHHHHH
Confidence 889999999999988765 4444555555444
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.64 E-value=1.3e-16 Score=127.92 Aligned_cols=63 Identities=54% Similarity=0.959 Sum_probs=60.1
Q ss_pred cccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHH
Q 002999 76 NFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEW 144 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w 144 (859)
+|.||||+++|+|||+++|||+|||++|++|+.. +.+||+|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~------~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS------HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH------CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 4899999999999999999999999999999987 57999999999999999999999999998
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.60 E-value=2.3e-12 Score=147.46 Aligned_cols=394 Identities=15% Similarity=0.106 Sum_probs=285.8
Q ss_pred HHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcC
Q 002999 172 KALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIG 251 (859)
Q Consensus 172 ~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~ 251 (859)
++|..++......+ ..+....+.+...|.+.+. +....++.+|..+......... ..+..+.|...|.+
T Consensus 20 ~~L~~l~~~~~~~~-----~l~~~~~~~lf~~L~~~~~----e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h 88 (503)
T PF10508_consen 20 EALPELKTELSSSP-----FLERLPEPVLFDCLNTSNR----EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTH 88 (503)
T ss_pred HHHHHHHHHHhhhh-----HHHhchHHHHHHHHhhcCh----HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcC
Confidence 36666665443222 1112222447788887766 6667777788777665333322 45678999999999
Q ss_pred CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHH
Q 002999 252 NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLIN 331 (859)
Q Consensus 252 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~ 331 (859)
+++.++..++..|.++..+++....+..+.+.++.++.++. ++|..+.+.|+.+|.+|+..+.....++..+.++.|..
T Consensus 89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~ 167 (503)
T PF10508_consen 89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKS 167 (503)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHH
Confidence 99999999999999999887765566667999999999999 89999999999999999999888888999999999999
Q ss_pred HhccCChHHHHHHHHHHHHhcCCC-ccHHHHHHhh-HHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHH
Q 002999 332 RLCQGSDNVQIEMAFLVGKLTLTN-SCKEHIARQC-AKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPA 407 (859)
Q Consensus 332 lL~~~~~~~~~~aa~~L~~la~~~-~~~~~i~~~g-i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~ 407 (859)
++...++.++..+..++.+++... +....+...| ++.+++.|+ |.-++.+++..|..|+..+.+...+.+.|+++.
T Consensus 168 l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~ 247 (503)
T PF10508_consen 168 LMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDK 247 (503)
T ss_pred HHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHH
Confidence 998888899999999999998655 4456666666 599999888 667899999999999998889999999999999
Q ss_pred HHHHHhccCCCC--HHHH-HHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 002999 408 LTDILFKSHDAS--PELK-ELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIA 484 (859)
Q Consensus 408 Lv~lL~~~~~~~--~~~~-~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La 484 (859)
|..++.....++ ..+. -.......+++...+... .-.-..++..|.+++.+.++..+..|..+|..++
T Consensus 248 L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v---------~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 248 LSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV---------LELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH---------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 999998743222 2222 222355566666422111 0112456667778888899999999999999999
Q ss_pred cCChhHHHHHHHHhhCCC----HHHHHHhhcCCChhHHHHHHHHHHHHhhhcc----HH---HH----HhcCCCCchH-H
Q 002999 485 SSPQAAESVATHIKSGDG----IKYIIQFLEHPEVEHRTYAFRLTRILSERIG----QD---LA----YALKPFDKLV-L 548 (859)
Q Consensus 485 ~~~~~~~~~~~~i~~~g~----i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~----~~---~~----~~l~~~g~i~-~ 548 (859)
+..++...+ .....+. +..+-....++..++|..++.+|.++-.... ++ .. +.+.. +... .
T Consensus 319 st~~G~~~L--~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~-~~~~~~ 395 (503)
T PF10508_consen 319 STVEGKQLL--LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSG-SPLSNL 395 (503)
T ss_pred CCHHHHHHH--HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcC-CchHHH
Confidence 887653222 1122233 3344445666777999999999999942111 11 11 12222 3444 7
Q ss_pred HHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHH-hccHHH
Q 002999 549 FKDKILDNQSANCERSDAACILANIQLSEEEVKTLLE-ATFIKW 591 (859)
Q Consensus 549 Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~-~g~v~~ 591 (859)
++.+++.+=. +++.++..+|..|+.+.-..+.+.. .|.++.
T Consensus 396 l~~~~~qPF~--elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~ 437 (503)
T PF10508_consen 396 LMSLLKQPFP--ELRCAAYRLLQALAAQPWGQREICSSPGFIEY 437 (503)
T ss_pred HHHHhcCCch--HHHHHHHHHHHHHhcCHHHHHHHHhCccHHhh
Confidence 8888877755 8999999999999997766666666 444443
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.59 E-value=1.2e-12 Score=135.79 Aligned_cols=401 Identities=14% Similarity=0.084 Sum_probs=293.3
Q ss_pred HHHHHHHHhcCCcchhHH----HhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHH
Q 002999 174 LDIVFKISEEHPSNRYRV----RNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHS 248 (859)
Q Consensus 174 l~~L~~l~~~~~~~r~~i----~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~l 248 (859)
...+.+.++ ++..|..+ +++|+++.|.+..+|++. ++.....++|+|+|.+ .++|..+.+.|+-..++++
T Consensus 63 ssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~----ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~ 137 (604)
T KOG4500|consen 63 SSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDT----EVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDV 137 (604)
T ss_pred HHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcc----cHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhh
Confidence 334444443 44444333 345777777777777766 9999999999999998 8999999999998888888
Q ss_pred hcC----CC---HHHHHHHHHHHHHhccCh-hhhhHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcCC-CcC-h
Q 002999 249 LIG----NS---EKEKEYAVKLLLEFCIDE-AYCKSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKMERI-EEI-V 317 (859)
Q Consensus 249 L~~----~~---~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~~-~~~-~ 317 (859)
|+. ++ .+....+...|.|.+.+. +.+.+.. +.|+++.|+.++. +-.+....+.......||.+. .++ .
T Consensus 138 L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~-~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~ 216 (604)
T KOG4500|consen 138 LKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVA-DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLY 216 (604)
T ss_pred hccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHH-hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhh
Confidence 764 22 245566778899988775 4555555 6999999999987 445666666666666666542 222 3
Q ss_pred HHHHhcCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCCccHHHHHHhhH-HHHHHHhC---Ch-------hHHHHHHHH
Q 002999 318 QPLAAAGRFEPLINRLCQ-GSDNVQIEMAFLVGKLTLTNSCKEHIARQCA-KVLVELLS---KP-------AGRAASLKA 385 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi-~~Lv~lL~---~~-------~~~~~a~~a 385 (859)
....+......++++|.+ -.++.....-..|+..+.++..|..+++.|. +.++.+++ +. ..-..++..
T Consensus 217 ~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el 296 (604)
T KOG4500|consen 217 PFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAEL 296 (604)
T ss_pred hhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhH
Confidence 344556667778888843 3455556666788888999999999988884 77777776 11 122234444
Q ss_pred HHHhhCCCcchHHHHHcC-cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHh
Q 002999 386 LYNLSGLDDNATILVDSA-LLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGL 464 (859)
Q Consensus 386 L~~Ls~~~~~~~~i~~~G-~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~L 464 (859)
..-|..+++.-..+...| .+..++..+.+ .+..+...+.-++.|++..+.... .+++.+.+..|+.+
T Consensus 297 ~vllltGDeSMq~L~~~p~~l~~~~sw~~S---~d~~l~t~g~LaigNfaR~D~~ci---------~~v~~~~~nkL~~~ 364 (604)
T KOG4500|consen 297 DVLLLTGDESMQKLHADPQFLDFLESWFRS---DDSNLITMGSLAIGNFARRDDICI---------QLVQKDFLNKLISC 364 (604)
T ss_pred hhhhhcCchHHHHHhcCcHHHHHHHHHhcC---CchhHHHHHHHHHHhhhccchHHH---------HHHHHHHHHHHHHH
Confidence 555566666666666665 77778888865 456788889999999999887665 47889999999999
Q ss_pred hcC-----CChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHh
Q 002999 465 LSG-----VSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYA 539 (859)
Q Consensus 465 L~~-----~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~ 539 (859)
|.. ++.+.|..++.+|.|+.-...+ +.++..+|..+.++.+++...|.+...-...++.+. ...+.....
T Consensus 365 l~~~~~vdgnV~~qhA~lsALRnl~IPv~n----ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~-d~qe~~a~e 439 (604)
T KOG4500|consen 365 LMQEKDVDGNVERQHACLSALRNLMIPVSN----KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR-DSQEYIACE 439 (604)
T ss_pred HHHhcCCCccchhHHHHHHHHHhccccCCc----hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH-hchHHHHHH
Confidence 843 4558888999999999876443 467889999999999999999998887777777775 333446666
Q ss_pred cCCC-CchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHH---HHHHHHhccHHHHHHHHhh
Q 002999 540 LKPF-DKLVLFKDKILDNQSANCERSDAACILANIQLSEEE---VKTLLEATFIKWIVITLQT 598 (859)
Q Consensus 540 l~~~-g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~---~~~l~~~g~v~~L~~lL~~ 598 (859)
+.+. ..++.||...++++- ..+....-+.+..|..+... +..+.+.|+++..+..+..
T Consensus 440 L~kn~~l~ekLv~Wsks~D~-aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~ 501 (604)
T KOG4500|consen 440 LAKNPELFEKLVDWSKSPDF-AGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTK 501 (604)
T ss_pred HhcCHHHHHHHHHhhhCCcc-chhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHH
Confidence 6665 678999999999887 35777788888888876433 2778889999999988865
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.1e-12 Score=137.55 Aligned_cols=381 Identities=13% Similarity=0.160 Sum_probs=276.0
Q ss_pred hHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhh-HHHHHHHhC-
Q 002999 297 PALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQC-AKVLVELLS- 374 (859)
Q Consensus 297 ~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~g-i~~Lv~lL~- 374 (859)
..+...|...|.||+.+-..-.+|.+.+.+..||+.|...+.++.......|..|+..++||..+.+.| +..|++++.
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 344566788899999877777789999999999999999999999999999999999999999999877 599999998
Q ss_pred -ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCccc
Q 002999 375 -KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQ 453 (859)
Q Consensus 375 -~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~ 453 (859)
.++++...+..|.|||.....+..++..|.+|.|..+|.+ ..-..-|..+|..++.++..+. .+.
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~-----d~~~~iA~~~lYh~S~dD~~K~---------Mfa 422 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS-----DTKHGIALNMLYHLSCDDDAKA---------MFA 422 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC-----cccchhhhhhhhhhccCcHHHH---------HHH
Confidence 9999999999999999999999999999999999999954 2334568889999987765544 466
Q ss_pred ccchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHh-hcCCChhHHHHHHHHHHHHhhh
Q 002999 454 SESIVSSLLGLLSGV-SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQF-LEHPEVEHRTYAFRLTRILSER 531 (859)
Q Consensus 454 ~~~~i~~Ll~LL~~~-~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~A~~~L~~Ls~~ 531 (859)
....|+.+...+-.+ +.++-...+..-.|+|-+..+ .+.+.+..|+..|... +++.++- -.+.+++++.+
T Consensus 423 yTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN----aQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqH 494 (791)
T KOG1222|consen 423 YTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN----AQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQH 494 (791)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc----ceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhc
Confidence 778899888765443 334444344444578777544 3567788898888764 4444432 23578899855
Q ss_pred ccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHHhccHHHHHHHHhhhcccccCCCCCC
Q 002999 532 IGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLEATFIKWIVITLQTHKSSFNTRSSRP 610 (859)
Q Consensus 532 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~ 610 (859)
.+. .+..+. +.++.|...++..++ .+....+.|+|+||...+..- ..+.+...+||+-..|+.....
T Consensus 495 eg~-tqn~Fi--dyvgdLa~i~~nd~~-E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~e-------- 562 (791)
T KOG1222|consen 495 EGA-TQNMFI--DYVGDLAGIAKNDNS-ESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADE-------- 562 (791)
T ss_pred cch-HHHHHH--HHHHHHHHHhhcCch-HHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccc--------
Confidence 443 333444 588899999988776 456678999999999866555 4555588999988888763211
Q ss_pred cchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCC-ChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccc
Q 002999 611 ISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFP-SKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRF 689 (859)
Q Consensus 611 ~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~ 689 (859)
.+++=..+-++...+ -+..+...+...++|+.|++||+.. -+++....-.....++-.+......+
T Consensus 563 -ddLvL~~vi~~GT~a--~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~m---------- 629 (791)
T KOG1222|consen 563 -DDLVLQIVIACGTMA--RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLM---------- 629 (791)
T ss_pred -hhhhhHHHHHhhhhh--hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 112222222222222 3667778888999999999999874 13444444444445554442111000
Q ss_pred cccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhc
Q 002999 690 CASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIID 756 (859)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d 756 (859)
+-+...-.-|++|+++.+.++++..=.+|-.++..
T Consensus 630 --------------------------------iket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 630 --------------------------------IKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred --------------------------------HhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 01112233699999999999999999999988865
No 23
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.53 E-value=1.6e-11 Score=134.65 Aligned_cols=495 Identities=14% Similarity=0.092 Sum_probs=309.3
Q ss_pred CCChHHHHHHHHHHHHhc-CCCcChHHHHhcCChHHHHHHhc--cCChHHHHHHHHHHHHhcCCCcc-HHHHHH-hhHHH
Q 002999 294 LELPALSNLADEVFKKME-RIEEIVQPLAAAGRFEPLINRLC--QGSDNVQIEMAFLVGKLTLTNSC-KEHIAR-QCAKV 368 (859)
Q Consensus 294 ~~~~~~~~~a~~aL~nL~-~~~~~~~~i~~~G~i~~Lv~lL~--~~~~~~~~~aa~~L~~la~~~~~-~~~i~~-~gi~~ 368 (859)
..+|+....|..-..|+. .+++++..+.+.|+++.|..++. .+..+.+...+.++..+...+++ ...+.+ .-.+.
T Consensus 20 ~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 20 HLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLK 99 (678)
T ss_pred cCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHH
Confidence 356666667777777877 56777888999999999999985 45677777777777777765544 444444 44699
Q ss_pred HHHHhC--C-hhHHHHHHHHHHHhhCCCcch---HHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccc
Q 002999 369 LVELLS--K-PAGRAASLKALYNLSGLDDNA---TILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWEL 442 (859)
Q Consensus 369 Lv~lL~--~-~~~~~~a~~aL~~Ls~~~~~~---~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 442 (859)
|.++|. + ..++...++++.++-.....+ .......+++.+..++.. +...+.+.-+....++++....+
T Consensus 100 Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~---~lk~~~~l~~~~~a~~s~~~~hq-- 174 (678)
T KOG1293|consen 100 LLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSI---ELKYISRLDVSRAAHLSSTKDHQ-- 174 (678)
T ss_pred HHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhh---hhhhhhhhhhhhhccccccchhh--
Confidence 999999 5 678899999999997765333 333344556665555531 12233333344444444444222
Q ss_pred cccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHH---HhccCC-hhHHHHHHHHhhCCCHH--HHHHhhcCCChh
Q 002999 443 ASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILC---GIASSP-QAAESVATHIKSGDGIK--YIIQFLEHPEVE 516 (859)
Q Consensus 443 ~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~---~La~~~-~~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~ 516 (859)
..+...++.+.+.-++...+..++..|+..+. ++..++ ...-.........|..+ .+-+++++++..
T Consensus 175 -------~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s 247 (678)
T KOG1293|consen 175 -------LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS 247 (678)
T ss_pred -------heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc
Confidence 25677788888877777777899999999998 665553 33334445555556655 566788888888
Q ss_pred HHHHHHHHHHHHhhhccHH---HHH-hcCCCC--ch--HHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHHhc
Q 002999 517 HRTYAFRLTRILSERIGQD---LAY-ALKPFD--KL--VLFKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLEAT 587 (859)
Q Consensus 517 v~~~A~~~L~~Ls~~~~~~---~~~-~l~~~g--~i--~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~g 587 (859)
.+..++.++-++.+..-++ ... .+.+.| .+ -..+.+...+-. ..-..++.+.+.++.--..+ ..-.+..
T Consensus 248 ~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~--s~l~~~~~l~c~~a~~~sklq~~~~e~~ 325 (678)
T KOG1293|consen 248 ERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGL--STLDHTNVLFCILARFASKLQLPQHEEA 325 (678)
T ss_pred HHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCce--eehhhhhhhHHHHHHHHHhhhhHHhhhh
Confidence 8887888777775222110 001 111111 01 011111112111 01112222222222111112 3344555
Q ss_pred cHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhh
Q 002999 588 FIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLK 667 (859)
Q Consensus 588 ~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~ 667 (859)
..+.++.+|....+-...+ ...--+.-+-..++.++.........+.+.+.-+...+..+.... +......|...+.
T Consensus 326 ~~~~~~ellf~~~sl~a~~--~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~ 402 (678)
T KOG1293|consen 326 TLKTTTELLFICASLAASD--EKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLK 402 (678)
T ss_pred hhhhHHHHHHHHHHHhhcc--hhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHH
Confidence 6666666666543211110 000001111112222333333345556666666666666666664 7788877888888
Q ss_pred hhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHH
Q 002999 668 NLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAV 747 (859)
Q Consensus 668 ~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~ 747 (859)
+++.+...+... +-...+..|||++|..++..|...++
T Consensus 403 s~srsV~aL~tg------------------------------------------~~~~dv~~plvqll~dp~~~i~~~~l 440 (678)
T KOG1293|consen 403 SFSRSVSALRTG------------------------------------------LKRNDVAQPLVQLLMDPEIMIMGITL 440 (678)
T ss_pred HHHHHHHHHHcC------------------------------------------CccchhHHHHHHHhhCcchhHHHHHH
Confidence 887765433221 11345799999999999999999999
Q ss_pred HHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhH-HHHHHHhhc
Q 002999 748 EALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLV-RALVEAFKH 826 (859)
Q Consensus 748 ~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~-~~Lv~ll~~ 826 (859)
+||+||+++ +.+-...+.+.|||+.+...+. ..++..+.++.|.|..+....+...+....++.. .-++.+..+
T Consensus 441 gai~NlVme----fs~~kskfl~~ngId~l~s~~~-~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd 515 (678)
T KOG1293|consen 441 GAICNLVME----FSNLKSKFLRNNGIDILESMLT-DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND 515 (678)
T ss_pred HHHHHHHhh----cccHHHHHHHcCcHHHHHHHhc-CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC
Confidence 999999998 4344677889999999999998 5999999999999999986665555555555554 567889999
Q ss_pred CChhhHHHHHHHHHHHhhhcCCcCcc
Q 002999 827 GNANAKRHAQEALTNLKQISGLSGKA 852 (859)
Q Consensus 827 ~~~~~~~~A~~~L~~L~~~~~~~~~~ 852 (859)
.|+.+++.+-..|++|-=-..-|..|
T Consensus 516 ~d~~Vqeq~fqllRNl~c~~~~svdf 541 (678)
T KOG1293|consen 516 PDWAVQEQCFQLLRNLTCNSRKSVDF 541 (678)
T ss_pred CCHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 99999999999999986544444444
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.52 E-value=2.3e-11 Score=139.29 Aligned_cols=376 Identities=17% Similarity=0.201 Sum_probs=270.1
Q ss_pred HHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc-hHH
Q 002999 156 VVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE-SKK 234 (859)
Q Consensus 156 l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~-~r~ 234 (859)
+...|.+.+ .+.+..+...|..+..... .... ..+..+.|...|.++++ .+|..++..|.+++.+.+ ..+
T Consensus 43 lf~~L~~~~--~e~v~~~~~iL~~~l~~~~-~~~l--~~~~~~~L~~gL~h~~~----~Vr~l~l~~l~~~~~~~~~~~~ 113 (503)
T PF10508_consen 43 LFDCLNTSN--REQVELICDILKRLLSALS-PDSL--LPQYQPFLQRGLTHPSP----KVRRLALKQLGRIARHSEGAAQ 113 (503)
T ss_pred HHHHHhhcC--hHHHHHHHHHHHHHHhccC-HHHH--HHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHhcCCHHHHH
Confidence 666677543 3445556777777765332 2222 45677889999999888 999999999999988844 466
Q ss_pred HHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-
Q 002999 235 IMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI- 313 (859)
Q Consensus 235 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~- 313 (859)
.+.+.+.++.++.+|.+++.++...|+.+|.+++..+...+.++. .+.+..|..++. ..+..++.++..++.+++..
T Consensus 114 ~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMS-QSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcC
Confidence 677899999999999999999999999999999998887777764 677999999998 66778899999999999865
Q ss_pred CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhh-HHHHHHHhC----Chh----HHHHHHH
Q 002999 314 EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQC-AKVLVELLS----KPA----GRAASLK 384 (859)
Q Consensus 314 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~g-i~~Lv~lL~----~~~----~~~~a~~ 384 (859)
++....+.+.|.++.++..|.+++.-++.++...|..|+..+.+...+.+.| ++.|+.++. ++. ..-....
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence 5566778889999999999999888899999999999999888888887766 599999997 441 1122336
Q ss_pred HHHHhhCCCcchHHHHHcCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCccccc----chHH
Q 002999 385 ALYNLSGLDDNATILVDSALLPALTDILFKS-HDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSE----SIVS 459 (859)
Q Consensus 385 aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~----~~i~ 459 (859)
...+++...+.. +. +..|.++..|... .+.+...+..|..+++.+++..++.... ..... .++.
T Consensus 272 f~g~la~~~~~~--v~--~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L-------~~~~~~~~~~~l~ 340 (503)
T PF10508_consen 272 FFGNLARVSPQE--VL--ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLL-------LQKQGPAMKHVLK 340 (503)
T ss_pred HHHHHHhcChHH--HH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHH-------HhhcchHHHHHHH
Confidence 667777652221 11 2335555444431 2355688899999999999888776531 01112 2445
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCCh--hHHHH---HHH---HhhCCCHH-HHHHhhcCCChhHHHHHHHHHHHHhh
Q 002999 460 SLLGLLSGVSPQCQVSTLRILCGIASSPQ--AAESV---ATH---IKSGDGIK-YIIQFLEHPEVEHRTYAFRLTRILSE 530 (859)
Q Consensus 460 ~Ll~LL~~~~~~~~~~a~~aL~~La~~~~--~~~~~---~~~---i~~~g~i~-~Lv~lL~~~~~~v~~~A~~~L~~Ls~ 530 (859)
.+.....++..+++..++.+|.++-..+. ...++ .+. ....+... .+..+++.+-+++|..+.+.|..|+.
T Consensus 341 ~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 341 AIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 55555677778999999999999943321 11122 111 11234444 67888888889999999999999983
Q ss_pred hccHHHHHhcCCCCchHHHHHhhc
Q 002999 531 RIGQDLAYALKPFDKLVLFKDKIL 554 (859)
Q Consensus 531 ~~~~~~~~~l~~~g~i~~Lv~lL~ 554 (859)
.+-..+.-....|.++.|+.--.
T Consensus 421 -~~Wg~~~i~~~~gfie~lldr~~ 443 (503)
T PF10508_consen 421 -QPWGQREICSSPGFIEYLLDRST 443 (503)
T ss_pred -CHHHHHHHHhCccHHhhhcCCCC
Confidence 33344443444476776665433
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=9.8e-13 Score=134.92 Aligned_cols=192 Identities=19% Similarity=0.203 Sum_probs=165.3
Q ss_pred hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHH
Q 002999 280 EKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKE 359 (859)
Q Consensus 280 ~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~ 359 (859)
+++-+..|+.+|+.+.||.+++.+..++.|.+..+.++..+.+.|+++.+..+|..+++.++..|..+|.|++.+.+++.
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 46788999999997789999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhHHHHHHH-hC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 360 HIARQCAKVLVEL-LS---KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 360 ~i~~~gi~~Lv~l-L~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
.|.. -++.+.+. +. +..++.+++++|.||+..++.+..+. +.++.++.+|.+ ++..++.+++.+|.||+.
T Consensus 90 ~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~---G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 90 QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSS---GSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHc---CChHHHHHHHHHHHHhcc
Confidence 8854 35555553 33 77899999999999998877777664 479999999976 456899999999999999
Q ss_pred CCCcccccccccccCcccccchHHHHHHhhcCC-ChHHHHHHHHHHHHhccC
Q 002999 436 NPGCWELASADKLGHSMQSESIVSSLLGLLSGV-SPQCQVSTLRILCGIASS 486 (859)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~-~~~~~~~a~~aL~~La~~ 486 (859)
++.... .+....+...|+.|+... +.++...++..+.|+..+
T Consensus 164 np~~~~---------~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 NPDMTR---------ELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred CHHHHH---------HHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 886644 366778899999999876 458889999999999654
No 26
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.49 E-value=2.3e-12 Score=132.24 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=167.8
Q ss_pred HhcCcHHHHHHHHhcC-CCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 002999 192 RNAGVVLLIVKLLKSS-SKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID 270 (859)
Q Consensus 192 ~~~g~i~~Lv~lL~~~-~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~ 270 (859)
.+.+-+..|+.+|++. ++ .+++.++.+|.+.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.+++.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp----~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDP----FIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred cCHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 4566778999999864 66 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHH
Q 002999 271 EAYCKSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVG 349 (859)
Q Consensus 271 ~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~ 349 (859)
.++...|- ..++.+.+.+. ..-|..++..++.+|.||+..++.+..+.. .++.|+.+|.+|+.
T Consensus 85 ~en~~~Ik---~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~----------- 148 (254)
T PF04826_consen 85 DENQEQIK---MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSE----------- 148 (254)
T ss_pred hhhHHHHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCCh-----------
Confidence 99988883 25777777554 334778889999999999988777766654 79999999988854
Q ss_pred HhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 002999 350 KLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAAT 429 (859)
Q Consensus 350 ~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~ 429 (859)
..+..++++|.|||.++.+...++.++++..++.++.. +.+.++...++..
T Consensus 149 ---------------------------~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~--~~~~~~l~~~l~~ 199 (254)
T PF04826_consen 149 ---------------------------KTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS--SESKENLLRVLTF 199 (254)
T ss_pred ---------------------------HHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc--CCccHHHHHHHHH
Confidence 46778888999999999888889999999999999865 3456888899999
Q ss_pred HHHhhcCCC
Q 002999 430 IANVVSNPG 438 (859)
Q Consensus 430 L~nL~~~~~ 438 (859)
..|+..+-.
T Consensus 200 ~~ni~~~~~ 208 (254)
T PF04826_consen 200 FENINENIK 208 (254)
T ss_pred HHHHHHhhC
Confidence 999966543
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=7.4e-10 Score=129.27 Aligned_cols=541 Identities=14% Similarity=0.136 Sum_probs=341.5
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcC-CCCcchHHHHHHHHHHHhcccC-
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSS-SKSVGTILRSKALMALLSMAKD- 229 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~~~~~al~~L~~L~~~- 229 (859)
+...++..|.+++ .++.++|=+.+..+....+ ..+.|..++... ++ .+|.-|+..++.++..
T Consensus 5 ~l~qLl~~l~spD--n~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p----~~Rq~aaVl~Rkl~~~~ 68 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPD--NEVRRQAEEALETLAKTEP----------LLPALAHILATSADP----QVRQLAAVLLRKLLTKH 68 (1075)
T ss_pred HHHHHHHHhcCCC--chHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCCh----HHHHHHHHHHHHHHHHH
Confidence 3556677777543 3455568888887765322 668888888764 55 8999999999888653
Q ss_pred -----cchHHHHHhhCchHHHHHHh-cCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHH
Q 002999 230 -----EESKKIMLEEGVTKSVIHSL-IGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLA 303 (859)
Q Consensus 230 -----~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 303 (859)
.+.|..|.. .|+..+ +...+.+|..-+.++..++.+.--. +- ++.++.|++.++ +.|+..++.|
T Consensus 69 w~~l~~e~~~siks-----~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~W---Pell~~L~q~~~-S~~~~~rE~a 138 (1075)
T KOG2171|consen 69 WSRLSAEVQQSIKS-----SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KW---PELLQFLFQSTK-SPNPSLRESA 138 (1075)
T ss_pred hhcCCHHHHHHHHH-----HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-ch---HHHHHHHHHHhc-CCCcchhHHH
Confidence 455555533 344433 3445778888889999998763211 22 568888888888 9999999999
Q ss_pred HHHHHHhcCCCcChHHHHhcCChHHHHH----HhccCChHHHHHHHHHHHHhcCCC-ccHHHHHHh--hHHHHHHHhC--
Q 002999 304 DEVFKKMERIEEIVQPLAAAGRFEPLIN----RLCQGSDNVQIEMAFLVGKLTLTN-SCKEHIARQ--CAKVLVELLS-- 374 (859)
Q Consensus 304 ~~aL~nL~~~~~~~~~i~~~G~i~~Lv~----lL~~~~~~~~~~aa~~L~~la~~~-~~~~~i~~~--gi~~Lv~lL~-- 374 (859)
..+|+++...-.+.. .+.++.+.. .+.+++..++..+++++..++... .++.....- -+|.++..+.
T Consensus 139 l~il~s~~~~~~~~~----~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~ 214 (1075)
T KOG2171|consen 139 LLILSSLPETFGNTL----QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEV 214 (1075)
T ss_pred HHHHHhhhhhhcccc----chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhh
Confidence 999999985433221 223334444 455666669999999999988765 455555443 3587887776
Q ss_pred ----ChhHHHHHHHHHHHhhCCCcc--hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccc
Q 002999 375 ----KPAGRAASLKALYNLSGLDDN--ATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKL 448 (859)
Q Consensus 375 ----~~~~~~~a~~aL~~Ls~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~ 448 (859)
+......+..+|..|.....- +..+. .++..-+.+..+ .+-+..+|..|+..|..++...+...+. .
T Consensus 215 i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k~----~ 287 (1075)
T KOG2171|consen 215 IQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCKK----L 287 (1075)
T ss_pred hhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhhh----c
Confidence 445567778888888765421 22222 244555555544 3456789999999999998874432221 0
Q ss_pred cCcccccchHHHHHHhhcCCCh----------------HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcC
Q 002999 449 GHSMQSESIVSSLLGLLSGVSP----------------QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEH 512 (859)
Q Consensus 449 ~~~l~~~~~i~~Ll~LL~~~~~----------------~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 512 (859)
...-...++.++.++..... .-...+..+|-.++.+-.+ +.+... .++.+-.++++
T Consensus 288 --~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g-~~v~p~-----~~~~l~~~l~S 359 (1075)
T KOG2171|consen 288 --ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG-KQVLPP-----LFEALEAMLQS 359 (1075)
T ss_pred --hhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh-hhehHH-----HHHHHHHHhcC
Confidence 11223455566665532110 1344577777777766322 122221 35667778999
Q ss_pred CChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHH
Q 002999 513 PEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWI 592 (859)
Q Consensus 513 ~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L 592 (859)
.+..-|..|+.+|..+++...+.....+- ..++..+..|.+++. .||.+|+.+++.++.+=
T Consensus 360 ~~w~~R~AaL~Als~i~EGc~~~m~~~l~--~Il~~Vl~~l~Dphp--rVr~AA~naigQ~stdl--------------- 420 (1075)
T KOG2171|consen 360 TEWKERHAALLALSVIAEGCSDVMIGNLP--KILPIVLNGLNDPHP--RVRYAALNAIGQMSTDL--------------- 420 (1075)
T ss_pred CCHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHhhcCCCCH--HHHHHHHHHHHhhhhhh---------------
Confidence 99999999999999998655555544443 588888999999887 89999999999887610
Q ss_pred HHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 593 VITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 593 ~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
-|++++.. ..-++|.|+..+.+.++++++.+||.||-|++..
T Consensus 421 -------------------------------------~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~ 462 (1075)
T KOG2171|consen 421 -------------------------------------QPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEE 462 (1075)
T ss_pred -------------------------------------cHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh
Confidence 12333333 2345778999998877999999999999999876
Q ss_pred cccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCch-HHHhhhccCChhHHHHHHHHHH
Q 002999 673 GRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIK-PLVDLLAEEDTNVEIAAVEALS 751 (859)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~-~Lv~lL~~~~~~v~~~A~~aL~ 751 (859)
...-.-. | + =.+.+. .|--|+.++.+.|++.++.||+
T Consensus 463 ~~~~~l~----------------------------p------------Y--Ld~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 463 CDKSILE----------------------------P------------Y--LDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred CcHHHHH----------------------------H------------H--HHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 4321100 0 0 012233 2333556788999999999999
Q ss_pred hhhhccCcchhhHHHHHHhcCC-hHHHHHHhhhcCchhHHHHHHHHHHHHHhcc--ccccccccchhhHHHHHHHhhcC-
Q 002999 752 TLIIDTSKNFKRGVDELEREGA-LDAVVDLFTEVRPGLLQERTVWMLERVLRVE--GHSHRYSLNQSLVRALVEAFKHG- 827 (859)
Q Consensus 752 ~L~~d~~~~~~~~~~~i~~~g~-i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~--~~~~~~~~~~~~~~~Lv~ll~~~- 827 (859)
..+.. . +...+.-... +|.|.+.|+..++.+.++-....++.+--.. -.++++...+ ..|++++-.+
T Consensus 501 svA~A-A-----~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a---~eliqll~~~~ 571 (1075)
T KOG2171|consen 501 SVADA-A-----QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA---EELIQLLLELQ 571 (1075)
T ss_pred HHHHH-H-----hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH---HHHHHHHHhhc
Confidence 99965 2 1222222333 4557777875333666665555555443211 1112222222 3444443333
Q ss_pred ------ChhhHHHHHHHHHHHhhh
Q 002999 828 ------NANAKRHAQEALTNLKQI 845 (859)
Q Consensus 828 ------~~~~~~~A~~~L~~L~~~ 845 (859)
|...+.+-...-+++.+.
T Consensus 572 ~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 572 GSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred ccchhhccccHHHHHHHHHHHHHH
Confidence 455666666666676664
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.9e-11 Score=128.29 Aligned_cols=361 Identities=16% Similarity=0.191 Sum_probs=263.6
Q ss_pred HHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHH
Q 002999 155 TVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKK 234 (859)
Q Consensus 155 ~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~ 234 (859)
.++..|...+.+ .+--....|..+.. -.+||..+.+.|.|+.|+++....++ +++...+..|.||+.+..+|.
T Consensus 308 mLVKaLdr~n~~--Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~----dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 308 MLVKALDRSNSS--LLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHP----DLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HHHHHHcccchH--HHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCH----HHHHHHHHHhhhccccccccH
Confidence 355555543332 22223445666655 46789999999999999999999988 999999999999999999999
Q ss_pred HHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC
Q 002999 235 IMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIE 314 (859)
Q Consensus 235 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~ 314 (859)
.++..|.+|.|+.+|.++. -..-|+..|+.+|.++..+..++. -.+|+.+.+.+-...+.++-......--|||.+.
T Consensus 381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 9999999999999998764 345688999999999999888875 6799999987662344445444445557999999
Q ss_pred cChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhC
Q 002999 315 EIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRAASLKALYNLSG 391 (859)
Q Consensus 315 ~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~ 391 (859)
.|.+.+++..++..|++.--...+.+ ....+.|++.++.--.-+.-.=+.-|...++ +....-.|+++|.||..
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchH---HHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 99999999999999998763332222 2356777777765322222222345555665 66788889999999988
Q ss_pred CC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCC--
Q 002999 392 LD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGV-- 468 (859)
Q Consensus 392 ~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~-- 468 (859)
.+ +-...+.+...||.+-..|....+ ...++-...-.+..++..... . ..+...+.|+.|++||+..
T Consensus 535 ~dldw~~ilq~~~LvPw~k~~L~pga~-eddLvL~~vi~~GT~a~d~~c-A--------~Lla~a~~i~tlieLL~a~Qe 604 (791)
T KOG1222|consen 535 TDLDWAKILQSENLVPWMKTQLQPGAD-EDDLVLQIVIACGTMARDLDC-A--------RLLAPAKLIDTLIELLQACQE 604 (791)
T ss_pred CCCCHHHHHhhccccHHHHHhhcCCcc-chhhhhHHHHHhhhhhhhhHH-H--------HHhCccccHHHHHHHHHhhcc
Confidence 77 455666678999999988876322 234444444444444443322 2 1467788999999999764
Q ss_pred ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCC
Q 002999 469 SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKP 542 (859)
Q Consensus 469 ~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~ 542 (859)
+.+...+.+.++..+-.+..++ +-.+.+...-..|+.++...+.++|..+-.+|--++ ..+.+.++.+..
T Consensus 605 DDEfV~QiiyVF~Q~l~He~tr---~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIia-e~d~EWAKrI~~ 674 (791)
T KOG1222|consen 605 DDEFVVQIIYVFLQFLKHELTR---RLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIA-EHDKEWAKRIAG 674 (791)
T ss_pred cchHHHHHHHHHHHHHHHHHHH---HHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHH-HhhHHHHHHHhh
Confidence 5588888888888888875442 234556677778999999999999998888888887 456777777664
No 29
>PRK09687 putative lyase; Provisional
Probab=99.38 E-value=1.2e-10 Score=122.35 Aligned_cols=252 Identities=14% Similarity=0.101 Sum_probs=196.3
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhh
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCK 275 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 275 (859)
.++.|+.+|.+.+. .+|..|+.+|..+.. ..+++.+..+++++++.+|..|+.+|..|...+..
T Consensus 24 ~~~~L~~~L~d~d~----~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 24 NDDELFRLLDDHNS----LKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred cHHHHHHHHhCCCH----HHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 35789999988888 999999999987743 35688889999999999999999999998653321
Q ss_pred HhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC
Q 002999 276 SVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN 355 (859)
Q Consensus 276 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~ 355 (859)
...+++.|..++.+..++.++..|+.+|.+++...... ...+++.+...+.+.+..++..++.+|+.+..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence 12367888888544788999999999999997543221 11245567788888899999999999986542
Q ss_pred ccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002999 356 SCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANV 433 (859)
Q Consensus 356 ~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL 433 (859)
..+++.|+.+|. ++.++..|+.+|..+....+ .+++.|+.+|. +.+..++..|+..|..+
T Consensus 158 -------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 -------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred -------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 346799999999 88999999999999833221 45788999994 46779999999999753
Q ss_pred hcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhc-C
Q 002999 434 VSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLE-H 512 (859)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~ 512 (859)
....+++.|+..|.++. ++..++.+|..+... .+++.|..+++ +
T Consensus 220 -------------------~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------~a~p~L~~l~~~~ 264 (280)
T PRK09687 220 -------------------KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------TLLPVLDTLLYKF 264 (280)
T ss_pred -------------------CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------hHHHHHHHHHhhC
Confidence 33567999999998865 667788888887543 25799999996 7
Q ss_pred CChhHHHHHHHHHH
Q 002999 513 PEVEHRTYAFRLTR 526 (859)
Q Consensus 513 ~~~~v~~~A~~~L~ 526 (859)
++.+++..|.++|.
T Consensus 265 ~d~~v~~~a~~a~~ 278 (280)
T PRK09687 265 DDNEIITKAIDKLK 278 (280)
T ss_pred CChhHHHHHHHHHh
Confidence 88899999888774
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=1.1e-10 Score=143.11 Aligned_cols=278 Identities=18% Similarity=0.159 Sum_probs=210.6
Q ss_pred HcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHH
Q 002999 401 DSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRIL 480 (859)
Q Consensus 401 ~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL 480 (859)
+.+.++.|+..|. ++++.++..|+.+|..+ ..+.+++.|+.+|++.++.++..++.+|
T Consensus 619 ~~~~~~~L~~~L~---D~d~~VR~~Av~~L~~~-------------------~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 619 DAPSVAELAPYLA---DPDPGVRRTAVAVLTET-------------------TPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHhhh-------------------cchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4467788999995 46789999999999854 2355788999999999999999999999
Q ss_pred HHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCch
Q 002999 481 CGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSAN 560 (859)
Q Consensus 481 ~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~ 560 (859)
..+..... ..+.|...|+++++.+|..|+.+|..+. . +....|+..|.+.+.
T Consensus 677 ~~l~~~~~-------------~~~~L~~~L~~~d~~VR~~A~~aL~~~~--~-----------~~~~~l~~~L~D~d~-- 728 (897)
T PRK13800 677 RELVEVLP-------------PAPALRDHLGSPDPVVRAAALDVLRALR--A-----------GDAALFAAALGDPDH-- 728 (897)
T ss_pred HHHHhccC-------------chHHHHHHhcCCCHHHHHHHHHHHHhhc--c-----------CCHHHHHHHhcCCCH--
Confidence 88753321 1256777888899999999999888773 1 223567888888886
Q ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhc
Q 002999 561 CERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQ 640 (859)
Q Consensus 561 ~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~ 640 (859)
.++..|+.+|+.+.. .+.|..++.+. ...+...++.+|..+... +.
T Consensus 729 ~VR~~Av~aL~~~~~-------------~~~l~~~l~D~-----------~~~VR~~aa~aL~~~~~~----------~~ 774 (897)
T PRK13800 729 RVRIEAVRALVSVDD-------------VESVAGAATDE-----------NREVRIAVAKGLATLGAG----------GA 774 (897)
T ss_pred HHHHHHHHHHhcccC-------------cHHHHHHhcCC-----------CHHHHHHHHHHHHHhccc----------cc
Confidence 899999999998643 23344444441 123455566666655321 12
Q ss_pred CchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcc
Q 002999 641 RLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQL 720 (859)
Q Consensus 641 ~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (859)
..++.|..+++++ ++.+|..|+.+|+.+...
T Consensus 775 ~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~------------------------------------------------ 805 (897)
T PRK13800 775 PAGDAVRALTGDP-DPLVRAAALAALAELGCP------------------------------------------------ 805 (897)
T ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCc------------------------------------------------
Confidence 2378899999996 999999999999875311
Q ss_pred hhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHH
Q 002999 721 CLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERV 800 (859)
Q Consensus 721 ~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~ 800 (859)
...+.+|+..|.++++.|+..|+.+|..+... .+++.|..+|. .++..+|..|+++|.++
T Consensus 806 ----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~---------------~a~~~L~~~L~-D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 806 ----PDDVAAATAALRASAWQVRQGAARALAGAAAD---------------VAVPALVEALT-DPHLDVRKAAVLALTRW 865 (897)
T ss_pred ----chhHHHHHHHhcCCChHHHHHHHHHHHhcccc---------------chHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence 11356799999999999999999999988633 35588999998 49999999999999996
Q ss_pred HhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHH
Q 002999 801 LRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTN 841 (859)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~ 841 (859)
- .+......|..++.+.|+.+|..|.++|.+
T Consensus 866 ~----------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 866 P----------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred C----------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 1 122335789999999999999999999976
No 31
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.35 E-value=4.7e-10 Score=123.32 Aligned_cols=477 Identities=15% Similarity=0.093 Sum_probs=305.1
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHH
Q 002999 168 DGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVI 246 (859)
Q Consensus 168 ~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv 246 (859)
..+ .|.....++..+++.++..+.+.|++|.|..++...+... +.+......+..+... ++....+.+.+.++.|.
T Consensus 25 ~lv-rai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~--~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll 101 (678)
T KOG1293|consen 25 QLV-RAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGST--ELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLL 101 (678)
T ss_pred HHH-HHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCch--hhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHH
Confidence 335 4888899999999999998999999999999998766532 6666666677777666 66778889999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHHhccChhhhhHhhh--hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhc
Q 002999 247 HSLIGNS-EKEKEYAVKLLLEFCIDEAYCKSVAS--EKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAA 323 (859)
Q Consensus 247 ~lL~~~~-~~~~~~A~~~L~~Ls~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~ 323 (859)
.+|...+ ..+++...+.++.+-.........-. ....++.+..++. .+.......-+....++|..+.++..+.++
T Consensus 102 ~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s-~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na 180 (678)
T KOG1293|consen 102 QLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS-IELKYISRLDVSRAAHLSSTKDHQLILCNA 180 (678)
T ss_pred HHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh-hhhhhhhhhhhhhhccccccchhhheeccc
Confidence 9999888 77888888899888765433222211 1223444433333 244445555566667888888888889999
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHH---HhcCCCcc--HHHH---HHhhH-H--HHHHHhC--ChhHHHHHHHHHHHhh
Q 002999 324 GRFEPLINRLCQGSDNVQIEMAFLVG---KLTLTNSC--KEHI---ARQCA-K--VLVELLS--KPAGRAASLKALYNLS 390 (859)
Q Consensus 324 G~i~~Lv~lL~~~~~~~~~~aa~~L~---~la~~~~~--~~~i---~~~gi-~--~Lv~lL~--~~~~~~~a~~aL~~Ls 390 (859)
|+.+.+.-++...+...+..+...++ ++..+++- ...+ ...|+ + .+.++++ +...+..++.+|.++.
T Consensus 181 ~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~ 260 (678)
T KOG1293|consen 181 GILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYL 260 (678)
T ss_pred cchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHH
Confidence 99988888887778888888888888 77766644 2222 23454 3 3445555 5566677888888887
Q ss_pred CCCcchHH------HHHcCcHHHHH--HHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHH
Q 002999 391 GLDDNATI------LVDSALLPALT--DILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLL 462 (859)
Q Consensus 391 ~~~~~~~~------i~~~G~i~~Lv--~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll 462 (859)
...-+... ..+.|- ..++ ..+.-.+++-......++.+-+-++.-.+... ..-.++..++.+.
T Consensus 261 ~~s~~~d~l~~~~~~~dmgd-~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq--------~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 261 RKSFNYDPLPWWFIFFDMGD-SLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQ--------LPQHEEATLKTTT 331 (678)
T ss_pred hccccccccccceeeccCch-HHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhh--------hHHhhhhhhhhHH
Confidence 65422211 122230 1111 11111122322333333333333332111111 1123344555555
Q ss_pred Hhhc------CCChHHHHHHHH---HHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc
Q 002999 463 GLLS------GVSPQCQVSTLR---ILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIG 533 (859)
Q Consensus 463 ~LL~------~~~~~~~~~a~~---aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~ 533 (859)
+++. .+.++.+.-++. .+..++.... ...++.+.+.-....+..+....+...+..|+.++.++++ .-
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~--i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~sr-sV 408 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLE--ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSR-SV 408 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc--hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHH-HH
Confidence 5553 233333333222 2223333321 1223334443344455555556677888888888888874 33
Q ss_pred HHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHHhccHHHHHHHHhhhcccccCCCCCCcc
Q 002999 534 QDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLEATFIKWIVITLQTHKSSFNTRSSRPIS 612 (859)
Q Consensus 534 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~ 612 (859)
...+..+....++.+||+++..++. .++..+.|+|.||...-... ..+++.|+|..+.+.+.+.. .
T Consensus 409 ~aL~tg~~~~dv~~plvqll~dp~~--~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~-----------~ 475 (678)
T KOG1293|consen 409 SALRTGLKRNDVAQPLVQLLMDPEI--MIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPD-----------F 475 (678)
T ss_pred HHHHcCCccchhHHHHHHHhhCcch--hHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCC-----------c
Confidence 4455566666899999999988887 89999999999999854444 88999999999888877632 1
Q ss_pred hhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcc
Q 002999 613 NIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGR 674 (859)
Q Consensus 613 ~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 674 (859)
......+++|.++....+...+.....-=....++.+..++ ++.||+.+-..|.||.-++.
T Consensus 476 n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 476 NSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred hHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcH
Confidence 24677899999988765555544433222345677888887 99999999999999987744
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.34 E-value=5.9e-09 Score=122.17 Aligned_cols=494 Identities=15% Similarity=0.154 Sum_probs=321.3
Q ss_pred HHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcC
Q 002999 172 KALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIG 251 (859)
Q Consensus 172 ~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~ 251 (859)
+++..|-.+...+.... -+.+.+++++.+.+. ..++-+--.+..+...+.. ..+. ++..+.+-|.+
T Consensus 25 ~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~----~~Krl~yl~l~~~~~~~~~-~~~l---~~n~l~kdl~~ 90 (526)
T PF01602_consen 25 EALKKLIYLMMLGYDIS------FLFMEVIKLISSKDL----ELKRLGYLYLSLYLHEDPE-LLIL---IINSLQKDLNS 90 (526)
T ss_dssp HHHHHHHHHHHTT---G------STHHHHHCTCSSSSH----HHHHHHHHHHHHHTTTSHH-HHHH---HHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhcchh-HHHH---HHHHHHHhhcC
Confidence 47766655544333222 456778888887776 7777777777777665322 1222 46777888899
Q ss_pred CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHH
Q 002999 252 NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLIN 331 (859)
Q Consensus 252 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~ 331 (859)
+++..+..|+.+|.++.. ++.. +-.++.+.+++. ++++.+++.|+.++..+...... .+... .++.+..
T Consensus 91 ~n~~~~~lAL~~l~~i~~-~~~~------~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~ 159 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIRT-PEMA------EPLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQ 159 (526)
T ss_dssp SSHHHHHHHHHHHHHH-S-HHHH------HHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHH
T ss_pred CCHHHHHHHHhhhhhhcc-cchh------hHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhh
Confidence 999999999999999873 3322 236788889999 88999999999999999854322 12222 5889999
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHH
Q 002999 332 RLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALT 409 (859)
Q Consensus 332 lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv 409 (859)
+|.+.++.++..|..++..+-.+++.-..+...-+..|.+++. ++-.+...++.|..++....... .....++.+.
T Consensus 160 lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~--~~~~~i~~l~ 237 (526)
T PF01602_consen 160 LLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA--DKNRIIEPLL 237 (526)
T ss_dssp HTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH--HHHHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh--hHHHHHHHHH
Confidence 9999999999999999998811111111233444566666766 88889999999998876653222 0045678888
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChh
Q 002999 410 DILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQA 489 (859)
Q Consensus 410 ~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~ 489 (859)
.++.+ .+..+.-.|..++..+..... .-..+++.|.+++.+.+++++..++..|..++....
T Consensus 238 ~~l~s---~~~~V~~e~~~~i~~l~~~~~--------------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~- 299 (526)
T PF01602_consen 238 NLLQS---SSPSVVYEAIRLIIKLSPSPE--------------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP- 299 (526)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHSSSHH--------------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH-
T ss_pred HHhhc---cccHHHHHHHHHHHHhhcchH--------------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc-
Confidence 88875 456888889888887755432 235679999999999999999999999999988752
Q ss_pred HHHHHHHHhhCCCHHHHHHhhc-CCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHH
Q 002999 490 AESVATHIKSGDGIKYIIQFLE-HPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAAC 568 (859)
Q Consensus 490 ~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~ 568 (859)
..+. .....+..+. +++..+|..++.+|..++. +.+... .++.|...+.+..+ .+.+..++.
T Consensus 300 -----~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d-~~~~~~~i~ 362 (526)
T PF01602_consen 300 -----PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLAN---ESNVKE-----ILDELLKYLSELSD-PDFRRELIK 362 (526)
T ss_dssp -----HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHC---HHHHHHHHH
T ss_pred -----hhhh---hhhhhhheecCCCChhHHHHHHHHHhhccc---ccchhh-----HHHHHHHHHHhccc-hhhhhhHHH
Confidence 1122 2333344455 7888999999999999962 222222 56778888854433 268888888
Q ss_pred HHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHH
Q 002999 569 ILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRD 648 (859)
Q Consensus 569 ~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~ 648 (859)
.++.++...... ..-.++.+++++..... .+...++..+..+... +++.+..+ +..|++
T Consensus 363 ~I~~la~~~~~~----~~~~v~~l~~ll~~~~~-----------~~~~~~~~~i~~ll~~-~~~~~~~~-----l~~L~~ 421 (526)
T PF01602_consen 363 AIGDLAEKFPPD----AEWYVDTLLKLLEISGD-----------YVSNEIINVIRDLLSN-NPELREKI-----LKKLIE 421 (526)
T ss_dssp HHHHHHHHHGSS----HHHHHHHHHHHHHCTGG-----------GCHCHHHHHHHHHHHH-STTTHHHH-----HHHHHH
T ss_pred HHHHHHhccCch----HHHHHHHHHHhhhhccc-----------cccchHHHHHHHHhhc-ChhhhHHH-----HHHHHH
Confidence 888887522110 01123445555553111 1133344444444432 44444433 677888
Q ss_pred hhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCc
Q 002999 649 QLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCI 728 (859)
Q Consensus 649 lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i 728 (859)
.+.+-.++.++..++|.+|..+....... .....+
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~~~---------------------------------------------~~~~~~ 456 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIENTE---------------------------------------------SAPDIL 456 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTTTT---------------------------------------------HHHHHH
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccccc---------------------------------------------cHHHHH
Confidence 88875588999999999998876543200 011235
Q ss_pred hHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhh-hcCchhHHHHHHHHHHHH
Q 002999 729 KPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFT-EVRPGLLQERTVWMLERV 800 (859)
Q Consensus 729 ~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~A~~~l~~~ 800 (859)
..+++.....+..++...+.++..+... ..+-+. .. ..++.+.++.. .+.+.++|++|...+.-+
T Consensus 457 ~~l~~~~~~~~~~vk~~ilt~~~Kl~~~-~~~~~~-~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 457 RSLIENFIEESPEVKLQILTALAKLFKR-NPENEV-QN-----EILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHHH-SCSTTH-HH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHhh-CCchhh-HH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 5666666677889999999999999975 211010 01 12233444444 137999999998766543
No 33
>PRK09687 putative lyase; Provisional
Probab=99.34 E-value=2.7e-10 Score=119.85 Aligned_cols=251 Identities=13% Similarity=0.088 Sum_probs=191.2
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHH
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPL 320 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i 320 (859)
.++.|+.+|.+.+..++..|+.+|..+. ...+++.+..++. ++|+.++..|+.+|..|...+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCS-SKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCccc----
Confidence 5889999999999999999999998773 2447788888888 88999999999999998653322
Q ss_pred HhcCChHHHHHH-hccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchH
Q 002999 321 AAAGRFEPLINR-LCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNAT 397 (859)
Q Consensus 321 ~~~G~i~~Lv~l-L~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~ 397 (859)
..-.++.|..+ +.+.++.++..++.+|+++....... ....+..+...+. +..++..++.+|..+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------- 156 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------- 156 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------
Confidence 22356778877 57788999999999999986533211 1123345656665 8889999999997653
Q ss_pred HHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHH
Q 002999 398 ILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTL 477 (859)
Q Consensus 398 ~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~ 477 (859)
...+++.|+.+|.. .+..++..|+.+|..+.. ..+.+++.|+.+|.+.+++++..++
T Consensus 157 ---~~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~-----------------~~~~~~~~L~~~L~D~~~~VR~~A~ 213 (280)
T PRK09687 157 ---DEAAIPLLINLLKD---PNGDVRNWAAFALNSNKY-----------------DNPDIREAFVAMLQDKNEEIRIEAI 213 (280)
T ss_pred ---CHHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCC-----------------CCHHHHHHHHHHhcCCChHHHHHHH
Confidence 22368999999964 566899999999987721 1245788999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhc-cC
Q 002999 478 RILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKIL-DN 556 (859)
Q Consensus 478 ~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~-~~ 556 (859)
++|..+-.. .+++.|+..|++++ ++..++.+|..+. . ..+++.|.+++. ++
T Consensus 214 ~aLg~~~~~--------------~av~~Li~~L~~~~--~~~~a~~ALg~ig--~----------~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 214 IGLALRKDK--------------RVLSVLIKELKKGT--VGDLIIEAAGELG--D----------KTLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHccCCh--------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC--C----------HhHHHHHHHHHhhCC
Confidence 999886321 25899999998866 6777888888773 1 157899999997 55
Q ss_pred CCchhHHHHHHHHHH
Q 002999 557 QSANCERSDAACILA 571 (859)
Q Consensus 557 ~~~~~~~~~A~~~L~ 571 (859)
+. .++..|..+|.
T Consensus 266 d~--~v~~~a~~a~~ 278 (280)
T PRK09687 266 DN--EIITKAIDKLK 278 (280)
T ss_pred Ch--hHHHHHHHHHh
Confidence 44 78777777665
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.32 E-value=4.5e-10 Score=137.92 Aligned_cols=275 Identities=17% Similarity=0.130 Sum_probs=216.2
Q ss_pred cCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhh
Q 002999 194 AGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY 273 (859)
Q Consensus 194 ~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 273 (859)
.+.++.|+..|.+.++ .+|..|+..|..+. ..++++.|+.+|++++..++..|+.+|..+...
T Consensus 620 ~~~~~~L~~~L~D~d~----~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~--- 682 (897)
T PRK13800 620 APSVAELAPYLADPDP----GVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEV--- 682 (897)
T ss_pred chhHHHHHHHhcCCCH----HHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---
Confidence 4567889999998888 99999999998764 245789999999999999999999999887421
Q ss_pred hhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 002999 274 CKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTL 353 (859)
Q Consensus 274 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~ 353 (859)
....+.|..+|. +.|+.++..|+.+|..+.. +-...|+..|.+.++.++..++.+|+.+-
T Consensus 683 -------~~~~~~L~~~L~-~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~- 742 (897)
T PRK13800 683 -------LPPAPALRDHLG-SPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD- 742 (897)
T ss_pred -------cCchHHHHHHhc-CCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc-
Confidence 122357778888 7899999999999888752 22456888999999999999999998652
Q ss_pred CCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002999 354 TNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIA 431 (859)
Q Consensus 354 ~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~ 431 (859)
..+.|..++. ++.++..++.+|..+.... .+.++.|..++.. ++..++..|+.+|.
T Consensus 743 -----------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D---~d~~VR~aA~~aLg 800 (897)
T PRK13800 743 -----------DVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGD---PDPLVRAAALAALA 800 (897)
T ss_pred -----------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcC---CCHHHHHHHHHHHH
Confidence 1245667777 8899999999999986532 2347888888854 56899999999998
Q ss_pred HhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhc
Q 002999 432 NVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLE 511 (859)
Q Consensus 432 nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 511 (859)
++... ...+..++..|.+.++.++..++++|..+... ..++.|+.+|+
T Consensus 801 ~~g~~------------------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--------------~a~~~L~~~L~ 848 (897)
T PRK13800 801 ELGCP------------------PDDVAAATAALRASAWQVRQGAARALAGAAAD--------------VAVPALVEALT 848 (897)
T ss_pred hcCCc------------------chhHHHHHHHhcCCChHHHHHHHHHHHhcccc--------------chHHHHHHHhc
Confidence 76221 12345688889999999999999999887532 14689999999
Q ss_pred CCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHH
Q 002999 512 HPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILAN 572 (859)
Q Consensus 512 ~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~ 572 (859)
+++..||..|+++|..+. .+. ...+.|...+++.+. .++..|+.+|..
T Consensus 849 D~~~~VR~~A~~aL~~~~--~~~---------~a~~~L~~al~D~d~--~Vr~~A~~aL~~ 896 (897)
T PRK13800 849 DPHLDVRKAAVLALTRWP--GDP---------AARDALTTALTDSDA--DVRAYARRALAH 896 (897)
T ss_pred CCCHHHHHHHHHHHhccC--CCH---------HHHHHHHHHHhCCCH--HHHHHHHHHHhh
Confidence 999999999999998762 111 356778899998876 899999888863
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.26 E-value=1.5e-08 Score=118.62 Aligned_cols=471 Identities=16% Similarity=0.161 Sum_probs=325.6
Q ss_pred HHHHHhcCC--CHHHHHHHHH-HHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHH
Q 002999 244 SVIHSLIGN--SEKEKEYAVK-LLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPL 320 (859)
Q Consensus 244 ~Lv~lL~~~--~~~~~~~A~~-~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i 320 (859)
.+.+.+.+. +...+..++. ++.....+.+. .-+.+.+++++. +.|...+.-+--++..+...+.....+
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455556555 5555555544 44444444432 347788999999 899999999988888888665543333
Q ss_pred HhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHH
Q 002999 321 AAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATI 398 (859)
Q Consensus 321 ~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~ 398 (859)
++..+.+-|.++++.++..|.++|+++.. ..+.+...+.+.++|. ++.+|+.|+.++..+....+. .
T Consensus 80 ----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~ 148 (526)
T PF01602_consen 80 ----IINSLQKDLNSPNPYIRGLALRTLSNIRT-----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--L 148 (526)
T ss_dssp ----HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--C
T ss_pred ----HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--H
Confidence 56778888899999999999999999883 2233445677888887 889999999999999865432 1
Q ss_pred HHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHH
Q 002999 399 LVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLR 478 (859)
Q Consensus 399 i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~ 478 (859)
+... .++.+..+|.+ .++.++..|+.++..+ ..++... .-.-...+..|.+++...+|-.+..+++
T Consensus 149 ~~~~-~~~~l~~lL~d---~~~~V~~~a~~~l~~i-~~~~~~~---------~~~~~~~~~~L~~~l~~~~~~~q~~il~ 214 (526)
T PF01602_consen 149 VEDE-LIPKLKQLLSD---KDPSVVSAALSLLSEI-KCNDDSY---------KSLIPKLIRILCQLLSDPDPWLQIKILR 214 (526)
T ss_dssp HHGG-HHHHHHHHTTH---SSHHHHHHHHHHHHHH-HCTHHHH---------TTHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHH-HHHHHhhhccC---CcchhHHHHHHHHHHH-ccCcchh---------hhhHHHHHHHhhhcccccchHHHHHHHH
Confidence 2223 68899999954 5588999999999988 2222110 0112445666677778889999999999
Q ss_pred HHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCC
Q 002999 479 ILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQS 558 (859)
Q Consensus 479 aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 558 (859)
.|..++........ . ...++.+..++++.++.+...++.++..+.. ... +. ..++++|++++.+++.
T Consensus 215 ~l~~~~~~~~~~~~--~----~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~--~~~----~~-~~~~~~L~~lL~s~~~ 281 (526)
T PF01602_consen 215 LLRRYAPMEPEDAD--K----NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP--SPE----LL-QKAINPLIKLLSSSDP 281 (526)
T ss_dssp HHTTSTSSSHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--SHH----HH-HHHHHHHHHHHTSSSH
T ss_pred HHHhcccCChhhhh--H----HHHHHHHHHHhhccccHHHHHHHHHHHHhhc--chH----HH-HhhHHHHHHHhhcccc
Confidence 99999887543210 0 2357888899998899999999999998862 222 11 1578999999997775
Q ss_pred chhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHH
Q 002999 559 ANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVR 638 (859)
Q Consensus 559 ~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~ 638 (859)
.++..++..|..++..+... +. .....+..+... ....+...++.+|..++ ++.....
T Consensus 282 --nvr~~~L~~L~~l~~~~~~~---v~--~~~~~~~~l~~~----------~d~~Ir~~~l~lL~~l~---~~~n~~~-- 339 (526)
T PF01602_consen 282 --NVRYIALDSLSQLAQSNPPA---VF--NQSLILFFLLYD----------DDPSIRKKALDLLYKLA---NESNVKE-- 339 (526)
T ss_dssp --HHHHHHHHHHHHHCCHCHHH---HG--THHHHHHHHHCS----------SSHHHHHHHHHHHHHH-----HHHHHH--
T ss_pred --hhehhHHHHHHHhhcccchh---hh--hhhhhhheecCC----------CChhHHHHHHHHHhhcc---cccchhh--
Confidence 89999999999998866221 11 111112233310 12335677788888887 3444443
Q ss_pred hcCchHHHHHhh-cCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcC
Q 002999 639 EQRLMTIFRDQL-SFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDD 717 (859)
Q Consensus 639 ~~~~i~~Lv~lL-~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (859)
+++.|.+.+ ..+ ++.++..++.+++.++......
T Consensus 340 ---Il~eL~~~l~~~~-d~~~~~~~i~~I~~la~~~~~~----------------------------------------- 374 (526)
T PF01602_consen 340 ---ILDELLKYLSELS-DPDFRRELIKAIGDLAEKFPPD----------------------------------------- 374 (526)
T ss_dssp ---HHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHGSS-----------------------------------------
T ss_pred ---HHHHHHHHHHhcc-chhhhhhHHHHHHHHHhccCch-----------------------------------------
Confidence 467788888 443 7889999999999988653110
Q ss_pred CcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHH
Q 002999 718 SQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWML 797 (859)
Q Consensus 718 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l 797 (859)
..-.+..+++++...+..+...+...+.++..+ . ++. .. ..+..|++.+.+-.++.++..++|++
T Consensus 375 ------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~-~--~~~-~~-----~~l~~L~~~l~~~~~~~~~~~~~wil 439 (526)
T PF01602_consen 375 ------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSN-N--PEL-RE-----KILKKLIELLEDISSPEALAAAIWIL 439 (526)
T ss_dssp ------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHH-S--TTT-HH-----HHHHHHHHHHTSSSSHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhhhhccccccchHHHHHHHHhhc-C--hhh-hH-----HHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 123588999999998899999999999999865 2 111 11 24778888887667788999999999
Q ss_pred HHHHhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHhhh
Q 002999 798 ERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLKQI 845 (859)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 845 (859)
+.+....+.. . ........+++.+...++.+|.....++.++..-
T Consensus 440 GEy~~~~~~~-~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 440 GEYGELIENT-E--SAPDILRSLIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp HHHCHHHTTT-T--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccccc-c--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 9987533220 1 1223346788888888888999999999988865
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=3.6e-08 Score=115.45 Aligned_cols=485 Identities=14% Similarity=0.150 Sum_probs=295.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCCccHHHH-
Q 002999 284 LVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLC-QGSDNVQIEMAFLVGKLTLTNSCKEHI- 361 (859)
Q Consensus 284 i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~la~~~~~~~~i- 361 (859)
+..|+.-|. +.|.+++..|-++|.++...+. ..+.|..++. +.+++++..||-.++++....-.+..-
T Consensus 6 l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 6 LEQLLQQLL-SPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHhc-CCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 344444444 6777889999999999876544 6777888885 557778888887788876542111100
Q ss_pred HHhhH-HHHHHHh-C--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhhcC
Q 002999 362 ARQCA-KVLVELL-S--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFK-SHDASPELKELAAATIANVVSN 436 (859)
Q Consensus 362 ~~~gi-~~Lv~lL-~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~~~~a~~~L~nL~~~ 436 (859)
.+.-+ ..|+..+ + .+.++..-+.++..++++. ... .-|-|+.+|.. .+++++..++.|..+|.++...
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~------l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~ 148 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND------LPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPET 148 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc------ccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh
Confidence 11122 3444443 3 7788888999999998764 111 34556665554 2456778999999999998765
Q ss_pred CCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHh----hcC
Q 002999 437 PGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQF----LEH 512 (859)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~l----L~~ 512 (859)
-++...- .-....+.|.+-+.+++..++..+++++..++....+....+..++ ..+|.++.. ++.
T Consensus 149 ~~~~~~~---------~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~ 217 (1075)
T KOG2171|consen 149 FGNTLQP---------HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQD 217 (1075)
T ss_pred hccccch---------hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhc
Confidence 5443210 0012233344445555556999999999888765422123334443 245555554 455
Q ss_pred CChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHH--hccH
Q 002999 513 PEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLE--ATFI 589 (859)
Q Consensus 513 ~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~--~g~v 589 (859)
++.+.-..+..+|.-|....+.-++..+. ..|+.-..+..+.+--..+|..|...|..+...-+.. +..-. ...+
T Consensus 218 ~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv 295 (1075)
T KOG2171|consen 218 GDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLV 295 (1075)
T ss_pred cchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHH
Confidence 56666677778888877555555544554 3667777777766554578889999999888764443 22222 2223
Q ss_pred HHHHHHHhhhcccc---c---CCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 002999 590 KWIVITLQTHKSSF---N---TRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAA 663 (859)
Q Consensus 590 ~~L~~lL~~~~~~~---~---~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa 663 (859)
+.++....+..... + .-.+-+.. --.-+..++-+++..-.+... -.=+.+.+-.+|.+. ++.-|..|-
T Consensus 296 ~~~l~~mte~~~D~ew~~~d~~ded~~~~-~~~~A~~~lDrlA~~L~g~~v----~p~~~~~l~~~l~S~-~w~~R~AaL 369 (1075)
T KOG2171|consen 296 PVLLAMMTEEEDDDEWSNEDDLDEDDEET-PYRAAEQALDRLALHLGGKQV----LPPLFEALEAMLQST-EWKERHAAL 369 (1075)
T ss_pred HHHHHhcCCcccchhhccccccccccccC-cHHHHHHHHHHHHhcCChhhe----hHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 33333333221110 0 00000000 011122333333322111110 011245566778886 999999999
Q ss_pred HHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHH
Q 002999 664 HGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVE 743 (859)
Q Consensus 664 ~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 743 (859)
.||+.++.++.+..... =...++..+..|.++++.|+
T Consensus 370 ~Als~i~EGc~~~m~~~-------------------------------------------l~~Il~~Vl~~l~DphprVr 406 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGN-------------------------------------------LPKILPIVLNGLNDPHPRVR 406 (1075)
T ss_pred HHHHHHHcccHHHHHHH-------------------------------------------HHHHHHHHHhhcCCCCHHHH
Confidence 99999988765543210 01346778888999999999
Q ss_pred HHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhc--cccccccccchhhHH-HH
Q 002999 744 IAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRV--EGHSHRYSLNQSLVR-AL 820 (859)
Q Consensus 744 ~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~-~L 820 (859)
.+|+.|++.++.| +......-...--++.|+..+.+..++.++..|+.++-+++.. .+....|-. ++.. -|
T Consensus 407 ~AA~naigQ~std----l~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l 480 (1075)
T KOG2171|consen 407 YAALNAIGQMSTD----LQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKL 480 (1075)
T ss_pred HHHHHHHHhhhhh----hcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHH
Confidence 9999999999977 3233333334445567888888777889999999999988842 222223321 1222 55
Q ss_pred HHHhhcCChhhHHHHHHHHHHHhhh--cCCcCccc
Q 002999 821 VEAFKHGNANAKRHAQEALTNLKQI--SGLSGKAS 853 (859)
Q Consensus 821 v~ll~~~~~~~~~~A~~~L~~L~~~--~~~~~~~~ 853 (859)
-.+++++.+.+++.++.+++..+.. ..+..||.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d 515 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD 515 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 5688888999999999999998876 45556665
No 37
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=9.1e-08 Score=105.07 Aligned_cols=570 Identities=16% Similarity=0.110 Sum_probs=336.1
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc--hHHHHHh---hCchHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE--SKKIMLE---EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~--~r~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~ 269 (859)
.++|.|..+|.+.+. ..++.|..+|.+++.+.. ....... .-.+|.++.+.+++++..|..|+..+-....
T Consensus 128 elLp~L~~~L~s~d~----n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDY----NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII 203 (885)
T ss_pred hHHHHHHHHhcCCcc----cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence 467899999999887 789999999999998721 1111111 2258999999999999999999998887655
Q ss_pred ChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHH
Q 002999 270 DEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVG 349 (859)
Q Consensus 270 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~ 349 (859)
.....-.. .-...++.|..+-. .++++++++.+.+|.-|......+..=-=.|.|+.++..-++.++.+..+|+....
T Consensus 204 ~~~qal~~-~iD~Fle~lFalan-D~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 204 IQTQALYV-HIDKFLEILFALAN-DEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred cCcHHHHH-HHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 43222111 12346777777776 89999999999999999753222211111256667777778888999999999988
Q ss_pred HhcCCCccHHHHHH---hhHHHHHHHhC----Ch----------------------------------------------
Q 002999 350 KLTLTNSCKEHIAR---QCAKVLVELLS----KP---------------------------------------------- 376 (859)
Q Consensus 350 ~la~~~~~~~~i~~---~gi~~Lv~lL~----~~---------------------------------------------- 376 (859)
.+|..+-.+..+.. .-+|.|++-+. +.
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 89988866666643 34577776443 11
Q ss_pred --------hHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCCccccccccc
Q 002999 377 --------AGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKS-HDASPELKELAAATIANVVSNPGCWELASADK 447 (859)
Q Consensus 377 --------~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 447 (859)
.+++..+.+|--|+ .+.....++.++.+|+.+ .+....++|.+.-+|..++.+.-..-.
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~----- 429 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFV----- 429 (885)
T ss_pred cccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcc-----
Confidence 12222233332222 223445667777776652 346789999999999988765422110
Q ss_pred ccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCC--hhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHH
Q 002999 448 LGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSP--QAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLT 525 (859)
Q Consensus 448 ~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~--~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L 525 (859)
=.-...|+-|+.+|++..|-++...+|+|+..+..- ....+.... .+..|++-+-+++.+||+.||.++
T Consensus 430 ----p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p-----vL~~ll~~llD~NK~VQEAAcsAf 500 (885)
T KOG2023|consen 430 ----PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP-----VLEGLLRRLLDSNKKVQEAACSAF 500 (885)
T ss_pred ----cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH-----HHHHHHHHHhcccHHHHHHHHHHH
Confidence 011346889999999999999999999999887641 111111111 345566666778999999999999
Q ss_pred HHHhhhccHHHHHhcCCCCchHHHHHhhccCCC-chhHHHHHHHHHHHhcC---CcHH-HHHH----H-------H-hcc
Q 002999 526 RILSERIGQDLAYALKPFDKLVLFKDKILDNQS-ANCERSDAACILANIQL---SEEE-VKTL----L-------E-ATF 588 (859)
Q Consensus 526 ~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~-~~~~~~~A~~~L~~L~~---~~~~-~~~l----~-------~-~g~ 588 (859)
..+-+..+++....+. ..+..|+..+..-.. ---+...|.+.|+.=.. +.+. ++.+ + + ..-
T Consensus 501 AtleE~A~~eLVp~l~--~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd 578 (885)
T KOG2023|consen 501 ATLEEEAGEELVPYLE--YILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD 578 (885)
T ss_pred HHHHHhccchhHHHHH--HHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch
Confidence 9997555555544333 245556655543221 01344678888776442 2222 1111 1 1 111
Q ss_pred HHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhh-------------------------------cccCCChhhHHHH
Q 002999 589 IKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLH-------------------------------FTRSVNPQTLGMV 637 (859)
Q Consensus 589 v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~-------------------------------~~~~~~~~~~~~i 637 (859)
+=+|+.+|.+..+.-..+-.....++-..+..++.+ ++.+-...+...+
T Consensus 579 LfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lv 658 (885)
T KOG2023|consen 579 LFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLV 658 (885)
T ss_pred HHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHh
Confidence 223444444432100000011111122222222221 1111012234446
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcC
Q 002999 638 REQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDD 717 (859)
Q Consensus 638 ~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (859)
...|+...+.+.+++. -|+||..|=.-|+.++.....+-. + |
T Consensus 659 a~snl~~lll~C~~D~-~peVRQS~FALLGDltk~c~~~v~--------------------------------p--~--- 700 (885)
T KOG2023|consen 659 AQSNLLDLLLQCLQDE-VPEVRQSAFALLGDLTKACFEHVI--------------------------------P--N--- 700 (885)
T ss_pred hhccHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHhcc--------------------------------c--h---
Confidence 7788888888999996 899999888888888754321111 0 0
Q ss_pred CcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhh-cCchhHHHHHHHH
Q 002999 718 SQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTE-VRPGLLQERTVWM 796 (859)
Q Consensus 718 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~ 796 (859)
-+..++.|-.-|...+..++-.|..|++.++..-+.+. . ..-...+..|+..+.. ..+..+-|+.+-.
T Consensus 701 ------~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~----~-~~v~~vl~~L~~iin~~~~~~tllENtAIT 769 (885)
T KOG2023|consen 701 ------LADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM----K-QYVSPVLEDLITIINRQNTPKTLLENTAIT 769 (885)
T ss_pred ------HHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh----h-hHHHHHHHHHHHHhcccCchHHHHHhhhhh
Confidence 12345555566677888999999999999997511111 1 1111344455555442 2235677777777
Q ss_pred HHHHHh--ccccccccccchhhHHHHHH-HhhcCChhhHHHHHHHHHHHhhh
Q 002999 797 LERVLR--VEGHSHRYSLNQSLVRALVE-AFKHGNANAKRHAQEALTNLKQI 845 (859)
Q Consensus 797 l~~~~~--~~~~~~~~~~~~~~~~~Lv~-ll~~~~~~~~~~A~~~L~~L~~~ 845 (859)
+.++-. .++...... . ...|-.. +-.-+|...|..|=+-+.++=..
T Consensus 770 IGrLg~~~Pe~vAp~l~--~-f~~pWc~sl~~i~DneEK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 770 IGRLGYICPEEVAPHLD--S-FMRPWCTSLRNIDDNEEKESAFRGLCNMINV 818 (885)
T ss_pred hhhhhccCHHhcchhHH--H-HHHHHHHHhcccccchhHHHHHHHHHHheee
Confidence 777763 222222111 1 1233333 33334566777777766665444
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.16 E-value=5.6e-07 Score=106.05 Aligned_cols=365 Identities=14% Similarity=0.081 Sum_probs=242.0
Q ss_pred hCchHHHHHHhcCCCHHHHHHHHH-HHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYAVK-LLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV 317 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A~~-~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~ 317 (859)
.|-+..|-..|.+.+...+..|+. ++..++...+. ....+..++++. +.|.++++-.-..|.+.+......
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~-S~d~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAP-STDLELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccChHH
Confidence 345666777787777666666654 66777776542 235677788888 889999999999999988644332
Q ss_pred HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcc
Q 002999 318 QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDN 395 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~ 395 (859)
..+ ++..|.+=+.+.++.++..|.++|+.+-. ..+.+..++++.+.|. ++-+++.|+.|+.++-...+
T Consensus 103 alL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p- 172 (746)
T PTZ00429 103 ALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM- 172 (746)
T ss_pred HHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence 222 46678888889999999999999887654 2234445567777777 99999999999999965443
Q ss_pred hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHH
Q 002999 396 ATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVS 475 (859)
Q Consensus 396 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~ 475 (859)
..+.+.|.++.|.++|. +.+..+..+|+.+|..+....+..- -.....+..|+..|...++-.|..
T Consensus 173 -elv~~~~~~~~L~~LL~---D~dp~Vv~nAl~aL~eI~~~~~~~l----------~l~~~~~~~Ll~~L~e~~EW~Qi~ 238 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLN---DNNPVVASNAAAIVCEVNDYGSEKI----------ESSNEWVNRLVYHLPECNEWGQLY 238 (746)
T ss_pred -ccccccchHHHHHHHhc---CCCccHHHHHHHHHHHHHHhCchhh----------HHHHHHHHHHHHHhhcCChHHHHH
Confidence 34456788999999884 4667899999999999976543211 123456777888787777777888
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhcc
Q 002999 476 TLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILD 555 (859)
Q Consensus 476 a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~ 555 (859)
.+.+|....-. ...+.. ..+..+...|++.++.|...|++++.+++...+.+..+.+.. ..-.+|+.++.
T Consensus 239 IL~lL~~y~P~--~~~e~~------~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~s- 308 (746)
T PTZ00429 239 ILELLAAQRPS--DKESAE------TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLSR- 308 (746)
T ss_pred HHHHHHhcCCC--CcHHHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhhC-
Confidence 88888664322 212221 246778888999999999999999999974333343333322 23467787754
Q ss_pred CCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHH
Q 002999 556 NQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLG 635 (859)
Q Consensus 556 ~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~ 635 (859)
++. +++..+...|.-+....+.+ +... +..+.-... +. . -+....+.+|..++.. ++..
T Consensus 309 s~~--eiqyvaLr~I~~i~~~~P~l---f~~~-~~~Ff~~~~----------Dp-~-yIK~~KLeIL~~Lane---~Nv~ 367 (746)
T PTZ00429 309 RDA--ETQYIVCKNIHALLVIFPNL---LRTN-LDSFYVRYS----------DP-P-FVKLEKLRLLLKLVTP---SVAP 367 (746)
T ss_pred CCc--cHHHHHHHHHHHHHHHCHHH---HHHH-HHhhhcccC----------Cc-H-HHHHHHHHHHHHHcCc---ccHH
Confidence 343 78888887776666544332 1110 111101101 11 1 1455567777777643 2222
Q ss_pred HHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 636 MVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 636 ~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
.+ +.-|.+...+. +.+.++.+..+++.++..
T Consensus 368 ~I-----L~EL~eYa~d~-D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 368 EI-----LKELAEYASGV-DMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HH-----HHHHHHHhhcC-CHHHHHHHHHHHHHHHHh
Confidence 22 34455556664 889999999999998864
No 39
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.9e-11 Score=128.04 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHhcccCcchhccCcccccccccCCCCCCcccCcccccccCCCeec-C
Q 002999 15 NELTEQIKQLKSDLSQSSSVSERRILTSLQRILDTWSVVPDVAALNWDSELEEDCHILPFKNFLCPLTKQVMKEPVVL-E 93 (859)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpi~~~~m~dPv~~-~ 93 (859)
.++.++++....++-...-.+.+..+..+..+++.++...-..+. |++|++++| ++|.+|++..+|+|||++ .
T Consensus 799 rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~----EeED~GDvP--DeFlDPLmftimkdPV~Lp~ 872 (929)
T COG5113 799 RSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAV----EEEDMGDVP--DEFLDPLMFTIMKDPVKLPT 872 (929)
T ss_pred ccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhh----hhhhccCCc--hhhhCchhhhcccCCeeccc
Confidence 344555555555554444444444444455555554432221111 234688888 559999999999999988 5
Q ss_pred CCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhc
Q 002999 94 SAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRN 148 (859)
Q Consensus 94 ~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 148 (859)
||.|.||++|..|+.+ +.++|++|.||+.++..||.+||+.|-.|....
T Consensus 873 S~i~IDRSTikahlls------d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 873 SRITIDRSTIKAHLLS------DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred ccccccHHHHHHHHhc------CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 7899999999999998 679999999999999999999999999887654
No 40
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.3e-11 Score=138.45 Aligned_cols=128 Identities=23% Similarity=0.291 Sum_probs=96.2
Q ss_pred ChhHHHHHHHHHhhhhhcccchhhHH----HHHHHHHHHHhcccCcchhccCcccccccccCCCCCCcccCcccccccCC
Q 002999 13 NHNELTEQIKQLKSDLSQSSSVSERR----ILTSLQRILDTWSVVPDVAALNWDSELEEDCHILPFKNFLCPLTKQVMKE 88 (859)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpi~~~~m~d 88 (859)
-..++.++-++|..+.+.......++ .-..++.+...++++.+......+ ++++.+++| ++|.+||+..+|.|
T Consensus 806 F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~~Ie~~s~la~~~~~~~~~~~~-eee~l~dvp--def~DPlm~Tlm~d 882 (943)
T KOG2042|consen 806 FVEAVAKDGRSYSEELFNHAISILRKRILKSSRQIEEFSELAERVEATASIDAE-EEEELGDVP--DEFLDPLMSTLMSD 882 (943)
T ss_pred HHHHHhccccccCHHHHhhhHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCc--hhhhCccccccCCC
Confidence 44455555555555555555444421 123566776666665555444333 334556667 67999999999999
Q ss_pred CeecC-CCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhcc
Q 002999 89 PVVLE-SAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 89 Pv~~~-~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
||++| +|+|.||+.|++|+.+ +.++|+||++|+.++++||.+||+.|+.|..+..
T Consensus 883 PV~LP~Srv~vDRsti~rhlLs------~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 883 PVVLPSSRVTVDRSTIERHLLS------DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred CccCCcccccccHHHHHHHHhc------CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 99998 9999999999999998 7899999999999999999999999999987653
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.5e-08 Score=111.05 Aligned_cols=262 Identities=18% Similarity=0.078 Sum_probs=186.1
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHH-hccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcChHHH
Q 002999 244 SVIHSLIGN-SEKEKEYAVKLLLE-FCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER-IEEIVQPL 320 (859)
Q Consensus 244 ~Lv~lL~~~-~~~~~~~A~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i 320 (859)
.|+.=|... ++..+..|+.-|++ |+...+..-..+-..-.+|.||.+|+...+.++...|+++|.+||. .|.....+
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 333334333 44445555555544 3333332222222356899999999977889999999999999995 68889999
Q ss_pred HhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCCcchHHHH
Q 002999 321 AAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILV 400 (859)
Q Consensus 321 ~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~~~~i~ 400 (859)
++.++||.|++-|..-. -.++.+.++.||..|+..+ .+++.
T Consensus 251 V~~~aIPvl~~kL~~Ie-------------------------------------yiDvAEQ~LqALE~iSR~H--~~AiL 291 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIE-------------------------------------YIDVAEQSLQALEKISRRH--PKAIL 291 (1051)
T ss_pred ecccchHHHHHhhhhhh-------------------------------------hhHHHHHHHHHHHHHHhhc--cHHHH
Confidence 99999999998774311 2356788888999987643 46788
Q ss_pred HcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHH
Q 002999 401 DSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRIL 480 (859)
Q Consensus 401 ~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL 480 (859)
++|++-..+.+|.- ....+++.|+.+.+|+|..-..-.. =.-..++|.|-.+|+..+....+.++-++
T Consensus 292 ~AG~l~a~LsylDF---FSi~aQR~AlaiaaN~Cksi~sd~f---------~~v~ealPlL~~lLs~~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 292 QAGALSAVLSYLDF---FSIHAQRVALAIAANCCKSIRSDEF---------HFVMEALPLLTPLLSYQDKKPIESVCICL 359 (1051)
T ss_pred hcccHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCccc---------hHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 99999998888865 3468899999999999986533221 11246789999999999999999999999
Q ss_pred HHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCCh----hHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC
Q 002999 481 CGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEV----EHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN 556 (859)
Q Consensus 481 ~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 556 (859)
+.++.......+..+.+...|.+....+|+.-... .+.....+.|..++ .........+.+.++...|.++|...
T Consensus 360 ~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~ms-S~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMS-SGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHc-cCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 88876532223445678888999999998876643 23344566777776 34455666666667888888887765
Q ss_pred C
Q 002999 557 Q 557 (859)
Q Consensus 557 ~ 557 (859)
+
T Consensus 439 s 439 (1051)
T KOG0168|consen 439 S 439 (1051)
T ss_pred C
Confidence 4
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.06 E-value=2e-09 Score=98.70 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=106.1
Q ss_pred HHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 002999 190 RVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFC 268 (859)
Q Consensus 190 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls 268 (859)
.+.+.|+++.|+++|.+++. .++..++.+|.+++.+ ++++..+.+.|+++.++.+|.++++.++..|+++|.+++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~----~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDE----NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred hHHHcCChHHHHHHHHcCCH----HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 46788999999999998887 9999999999999998 888999999999999999999999999999999999999
Q ss_pred cChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC
Q 002999 269 IDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER 312 (859)
Q Consensus 269 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~ 312 (859)
.+...........|+++.|++++. ..+..+++.++.+|.||+.
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~-~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLD-SSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHh-cCCHHHHHHHHHHHHHhhC
Confidence 987544444446899999999999 7789999999999999873
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.02 E-value=7.3e-06 Score=96.81 Aligned_cols=506 Identities=14% Similarity=0.096 Sum_probs=304.7
Q ss_pred HHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cc
Q 002999 153 VSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EE 231 (859)
Q Consensus 153 i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~ 231 (859)
+..+...|.+.+. ..+ .++++.+-.....+...- .+.+-+++++.+.+. ++++-..-.|.+++.. ++
T Consensus 34 ~~ELr~~L~s~~~-~~k-k~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~----elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 34 GAELQNDLNGTDS-YRK-KAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDL----ELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred HHHHHHHHHCCCH-HHH-HHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCH----HHHHHHHHHHHHHcccChH
Confidence 3444555654332 223 357777554443332221 134567788888877 8888888888777764 22
Q ss_pred hHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhc
Q 002999 232 SKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKME 311 (859)
Q Consensus 232 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~ 311 (859)
. .+ -++..|.+-+.+.++.+|..|+++|.++-... +. .-.++.+.+.|. +.++-+++.|+.++.++-
T Consensus 102 l--al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~--e~l~~~lkk~L~-D~~pYVRKtAalai~Kly 168 (746)
T PTZ00429 102 K--AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VL--EYTLEPLRRAVA-DPDPYVRKTAAMGLGKLF 168 (746)
T ss_pred H--HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HH--HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 1 11 24677888888999999999999998874421 11 225667777787 889999999999999997
Q ss_pred CCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHh
Q 002999 312 RIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNL 389 (859)
Q Consensus 312 ~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~L 389 (859)
..+. ..+.+.|.++.|.++|.+.++.++.+|..+|..+...+.....+....+..|+..|. ++-.+...+.+|...
T Consensus 169 ~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 169 HDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred hhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 5433 234567888999999999999999999999999976554443344444566777666 777777777777442
Q ss_pred hCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCC
Q 002999 390 SGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVS 469 (859)
Q Consensus 390 s~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~ 469 (859)
.+...... ...+..+...|++ .+..+.-.|+.++.++...... ... ...-.....+|+.| .+++
T Consensus 247 --~P~~~~e~--~~il~~l~~~Lq~---~N~AVVl~Aik~il~l~~~~~~-~~~-------~~~~~rl~~pLv~L-~ss~ 310 (746)
T PTZ00429 247 --RPSDKESA--ETLLTRVLPRMSH---QNPAVVMGAIKVVANLASRCSQ-ELI-------ERCTVRVNTALLTL-SRRD 310 (746)
T ss_pred --CCCCcHHH--HHHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCcCCH-HHH-------HHHHHHHHHHHHHh-hCCC
Confidence 22222211 2456666777754 4568999999999988654210 100 01112234667776 4567
Q ss_pred hHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHH
Q 002999 470 PQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLF 549 (859)
Q Consensus 470 ~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~L 549 (859)
+++|-.+++.|.-+...... + +.. -+..+.-. -++...++...+.+|..|+. +.+... .+..|
T Consensus 311 ~eiqyvaLr~I~~i~~~~P~---l---f~~--~~~~Ff~~-~~Dp~yIK~~KLeIL~~Lan---e~Nv~~-----IL~EL 373 (746)
T PTZ00429 311 AETQYIVCKNIHALLVIFPN---L---LRT--NLDSFYVR-YSDPPFVKLEKLRLLLKLVT---PSVAPE-----ILKEL 373 (746)
T ss_pred ccHHHHHHHHHHHHHHHCHH---H---HHH--HHHhhhcc-cCCcHHHHHHHHHHHHHHcC---cccHHH-----HHHHH
Confidence 89999999888777664321 1 111 12222222 23344689999999999962 222222 33556
Q ss_pred HHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCC
Q 002999 550 KDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSV 629 (859)
Q Consensus 550 v~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~ 629 (859)
.....+.+. +.+..+..+++.++..-+.. ....+..|+.++... . .+...++-++..+.+.
T Consensus 374 ~eYa~d~D~--ef~r~aIrAIg~lA~k~~~~----a~~cV~~Ll~ll~~~---~---------~~v~e~i~vik~Ilrk- 434 (746)
T PTZ00429 374 AEYASGVDM--VFVVEVVRAIASLAIKVDSV----APDCANLLLQIVDRR---P---------ELLPQVVTAAKDIVRK- 434 (746)
T ss_pred HHHhhcCCH--HHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHhcCC---c---------hhHHHHHHHHHHHHHH-
Confidence 666666665 78888999999998643321 122334455555430 0 1122234444444332
Q ss_pred ChhhHHHHHhcCchHHHHHhh--cCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCC
Q 002999 630 NPQTLGMVREQRLMTIFRDQL--SFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTC 707 (859)
Q Consensus 630 ~~~~~~~i~~~~~i~~Lv~lL--~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (859)
.|+. .+++.|+.-+ ..-.+++.|....|.|+.++...++.
T Consensus 435 yP~~-------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a------------------------------- 476 (746)
T PTZ00429 435 YPEL-------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENG------------------------------- 476 (746)
T ss_pred CccH-------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhH-------------------------------
Confidence 2221 1345555433 11137889999999999876432110
Q ss_pred ccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHh-hhcCc
Q 002999 708 PIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLF-TEVRP 786 (859)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~ 786 (859)
...+..+++-...++.+|+...+.+...|... . +..... -+..+++.+ ....+
T Consensus 477 -----------------~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~-~--p~~~~~------~l~~vL~~~t~~~~d 530 (746)
T PTZ00429 477 -----------------KDIIQRFIDTIMEHEQRVQLAILSAAVKMFLR-D--PQGMEP------QLNRVLETVTTHSDD 530 (746)
T ss_pred -----------------HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhc-C--cHHHHH------HHHHHHHHHHhcCCC
Confidence 01243444444567889999999999988865 2 211111 223444333 33467
Q ss_pred hhHHHHHHHHHHHHHh
Q 002999 787 GLLQERTVWMLERVLR 802 (859)
Q Consensus 787 ~~~~~~A~~~l~~~~~ 802 (859)
+++|.+|. ...+++.
T Consensus 531 ~DVRDRA~-~Y~rLLs 545 (746)
T PTZ00429 531 PDVRDRAF-AYWRLLS 545 (746)
T ss_pred hhHHHHHH-HHHHHHc
Confidence 89999996 3344443
No 44
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.7e-10 Score=111.81 Aligned_cols=74 Identities=30% Similarity=0.463 Sum_probs=68.1
Q ss_pred cCCCCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhc
Q 002999 69 CHILPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRN 148 (859)
Q Consensus 69 ~~~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 148 (859)
.++|.+ ++|.|+.++|+|||+.|+|.||+|..|++|+.+ .| .++|+|+.+|....++||++|+..|..|...|
T Consensus 206 rEvpd~--lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~r---vg--hfdpvtr~~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 206 REVPDY--LCGKITLELMREPVITPSGITYDRADIEEHLQR---VG--HFDPVTRWPLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred ccccch--hhhhhhHHhhcCCccCccccchhHHHHHHHHHH---hc--cCCchhcccCCHHhhccchHHHHHHHHHHHhc
Confidence 466755 999999999999999999999999999999998 34 59999999999999999999999999999887
Q ss_pred c
Q 002999 149 V 149 (859)
Q Consensus 149 ~ 149 (859)
.
T Consensus 279 ~ 279 (284)
T KOG4642|consen 279 E 279 (284)
T ss_pred c
Confidence 5
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.00 E-value=5.4e-09 Score=95.77 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=103.3
Q ss_pred HHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC-hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC
Q 002999 235 IMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID-EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI 313 (859)
Q Consensus 235 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~ 313 (859)
.+++.|+++.|+.+|.+++...+..++.+|.+++.. ++....+. ..|+++.|+.+|. ++++.++..++.+|+||+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLK-SEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHh-CCCHHHHHHHHHHHHHHccC
Confidence 356789999999999999999999999999999998 66676665 4799999999999 78999999999999999987
Q ss_pred C-cChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 002999 314 E-EIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLT 352 (859)
Q Consensus 314 ~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la 352 (859)
. .....+.+.|+++.|+++|.+++.+++..++++|.+++
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 6 45667888999999999999999999999999888876
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.6e-07 Score=105.96 Aligned_cols=394 Identities=14% Similarity=0.142 Sum_probs=264.5
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHh-cCCcchhHHHhcCcHHHHHHHHhcC-CCCcchHHHHHHHHHHHhcccC
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISE-EHPSNRYRVRNAGVVLLIVKLLKSS-SKSVGTILRSKALMALLSMAKD 229 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~-~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~~~~~al~~L~~L~~~ 229 (859)
++..+++.|...+++..++ +|+..|..... .+++.-..+.-.-+||.|+.+|+.. +. +++..|+++|.+|+.-
T Consensus 168 k~kkLL~gL~~~~Des~Ql-eal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~----DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQL-EALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNF----DIMLLACRALTYLCEV 242 (1051)
T ss_pred HHHHHHHhccccCChHHHH-HHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccH----HHHHHHHHHHHHHHhh
Confidence 4666777777665544444 36666555432 3333222233345789999999875 44 9999999999999987
Q ss_pred -cchHHHHHhhCchHHHHHHh-cCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHH
Q 002999 230 -EESKKIMLEEGVTKSVIHSL-IGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVF 307 (859)
Q Consensus 230 -~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 307 (859)
+..-..+++.++||.|+.-| .-.-.++.++++.+|..++.... +.|- ..|+|-..+..|. --.-.++..|+.+.
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL-~AG~l~a~LsylD-FFSi~aQR~Alaia 318 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAIL-QAGALSAVLSYLD-FFSIHAQRVALAIA 318 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHH-hcccHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 88888999999999999655 44567889999999999998643 2343 4889999999888 34556889999999
Q ss_pred HHhcCC--CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC---ccH-HHHHHhh-HHHHHHHhC------
Q 002999 308 KKMERI--EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN---SCK-EHIARQC-AKVLVELLS------ 374 (859)
Q Consensus 308 ~nL~~~--~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~---~~~-~~i~~~g-i~~Lv~lL~------ 374 (859)
.|+|.. ++.-..+++ ++|.|-.+|+..+....+.++-++.+++..- .++ ..+...+ +....+||.
T Consensus 319 aN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~L 396 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTIL 396 (1051)
T ss_pred HHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccc
Confidence 999964 444455555 7999999998888888888888888886532 222 3333334 566777776
Q ss_pred ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCC------------CCHHHHHHHHHHHHHh-hcCCC--
Q 002999 375 KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHD------------ASPELKELAAATIANV-VSNPG-- 438 (859)
Q Consensus 375 ~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~------------~~~~~~~~a~~~L~nL-~~~~~-- 438 (859)
+........+.|..+|++. -....+.+.++...|-.+|..... .+.++-+--..++.-| +...+
T Consensus 397 s~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i 476 (1051)
T KOG0168|consen 397 SNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGI 476 (1051)
T ss_pred cccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccce
Confidence 4456666788888888875 567788888999988888875211 1222222221111111 00000
Q ss_pred ---------------------------cccccc------------------------c-ccccCccccc---------ch
Q 002999 439 ---------------------------CWELAS------------------------A-DKLGHSMQSE---------SI 457 (859)
Q Consensus 439 ---------------------------~~~~~~------------------------~-~~~~~~l~~~---------~~ 457 (859)
.|.... . +.....+.+. ..
T Consensus 477 ~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~l 556 (1051)
T KOG0168|consen 477 FAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDL 556 (1051)
T ss_pred eehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHH
Confidence 000000 0 0001111111 24
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHH
Q 002999 458 VSSLLGLLSG-VSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDL 536 (859)
Q Consensus 458 i~~Ll~LL~~-~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~ 536 (859)
++.|+++..+ .++.++.+|+.+|..|...... +.++..+.....-..+..+|.+.+..+...|+...-.|.+..++..
T Consensus 557 lpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~s-eli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F 635 (1051)
T KOG0168|consen 557 LPVLVEVYSSSANPDVRYKCLSAILRLVYFSNS-ELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTF 635 (1051)
T ss_pred HHHHHHHHhccCCchhhHHHHHHHHHHHhhCCH-HHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHh
Confidence 4555665544 5789999999999998766543 5677777777777788889999999998888888877776666777
Q ss_pred HHhcCCCCchHHHHHhhccCC
Q 002999 537 AYALKPFDKLVLFKDKILDNQ 557 (859)
Q Consensus 537 ~~~l~~~g~i~~Lv~lL~~~~ 557 (859)
-..+...|.+-..-+|....+
T Consensus 636 ~~~F~REGV~~~v~~L~~~~~ 656 (1051)
T KOG0168|consen 636 SPSFRREGVFHAVKQLSVDSN 656 (1051)
T ss_pred hhhHhhhhHHHHHHHHhccCC
Confidence 777777777766666666344
No 47
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.98 E-value=4.7e-10 Score=106.87 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=55.0
Q ss_pred CCCCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhccc----------CCCCCCCCCCCcccCCCCCcchhhh
Q 002999 70 HILPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLE----------DGRDPTCPVTGQVLKSLELKPNIGL 137 (859)
Q Consensus 70 ~~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~----------~~~~~~cP~t~~~l~~~~l~pn~~l 137 (859)
.+...++|.||||.+.++|||+++|||.||+.||.+|+..... .+....||+|+.+++..+++|.+.-
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 4444467999999999999999999999999999999864210 1224689999999998899987643
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=6.4e-06 Score=92.68 Aligned_cols=327 Identities=18% Similarity=0.169 Sum_probs=229.9
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE 231 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~ 231 (859)
+|+.+++++.++.--.|+- .|++.|+.+++ ..|..+.. -++++|+..|..+..+. ++...++.++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR-~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~--E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRR-DAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDP--EIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHHHHHHHHhhccchhhHH-HHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCH--HHHHHHHHHHHHHHhcCc
Confidence 4555555565544444665 49999999876 35555544 56789999998764433 999999999999987642
Q ss_pred -------hH------HH-----HHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC--hhhhhHhhhhhChHHHHHHhh
Q 002999 232 -------SK------KI-----MLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID--EAYCKSVASEKGALVLLSSMT 291 (859)
Q Consensus 232 -------~r------~~-----i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL 291 (859)
.+ .+ |...+-|..|+..+...+-.+|..++.+|..+-.. .+.+..+...+-+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 22 12 33367889999999988889999999999987654 467777777788999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcChHHHHh-cCChHHHHHHhccC----ChHHHHHHHHHHHHhcCCC-ccHHHHHHhh
Q 002999 292 GNLELPALSNLADEVFKKMERIEEIVQPLAA-AGRFEPLINRLCQG----SDNVQIEMAFLVGKLTLTN-SCKEHIARQC 365 (859)
Q Consensus 292 ~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~-~G~i~~Lv~lL~~~----~~~~~~~aa~~L~~la~~~-~~~~~i~~~g 365 (859)
. ...+.++..+.-.|..|..+..+.++++. .+++..|+.++... ..-+...|...|-||-.++ .|+.++.+++
T Consensus 176 ~-DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 176 R-DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred h-hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 9 66777889999999999988777766554 68999999999532 2346777888888988755 6788888877
Q ss_pred -HHHHHHHhC-----Ch----------hHHHHHHHHHHHhhCCC-------cchHHHHHcCcHHHHHHHHhccCCCCHHH
Q 002999 366 -AKVLVELLS-----KP----------AGRAASLKALYNLSGLD-------DNATILVDSALLPALTDILFKSHDASPEL 422 (859)
Q Consensus 366 -i~~Lv~lL~-----~~----------~~~~~a~~aL~~Ls~~~-------~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 422 (859)
+|.|.++|. +. .....++.+++.|..-. .+++.+...+++..|..++.+ ++-+.++
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~-~~vp~dI 333 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMH-PGVPADI 333 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcC-CCCcHhH
Confidence 799999888 31 11233566666665421 245678889999999999986 3467889
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccCccc--ccchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCC
Q 002999 423 KELAAATIANVVSNPGCWELASADKLGHSMQ--SESIVSSLLGLLSGVSP-QCQVSTLRILCGIASSP 487 (859)
Q Consensus 423 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~--~~~~i~~Ll~LL~~~~~-~~~~~a~~aL~~La~~~ 487 (859)
+..+.-++++...++...+....+-..-..- ...++-.++.+..+..| .++..++.++..+-.++
T Consensus 334 ltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 334 LTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 9999999999988765433211100000000 12233344555555444 78888888887666554
No 49
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.93 E-value=3.9e-07 Score=99.80 Aligned_cols=326 Identities=15% Similarity=0.138 Sum_probs=217.9
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchH-HHHHhh-----CchHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESK-KIMLEE-----GVTKSVIHSLIGNSEKEKEYAVKLLLEFC 268 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r-~~i~~~-----g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls 268 (859)
..+..++.+|+..+.+ ++....+..+..+..+...+ ..+.+. ....+++.+|.+++.-+...|+.+|..+.
T Consensus 53 ~y~~~~l~ll~~~~~~---d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 53 QYVKTFVNLLSQIDKD---DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHhccCcH---HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 4577888888765431 78888888888887774333 334432 46788888999988889999999999886
Q ss_pred cChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccC--ChHHHHHHHH
Q 002999 269 IDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQG--SDNVQIEMAF 346 (859)
Q Consensus 269 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~aa~ 346 (859)
........-....-...-|...|++..+...+.-++.+|.+|...++.|..+.+.+++++|+.+|+.. +...+.++.-
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 54221100000011233444555533456777888899999999999999999999999999999653 4678889999
Q ss_pred HHHHhcCCCccHHHHHHhh-HHHHHHHhC---ChhHHHHHHHHHHHhhCCCc-------chHHHHHcCcHHHHHHHHhcc
Q 002999 347 LVGKLTLTNSCKEHIARQC-AKVLVELLS---KPAGRAASLKALYNLSGLDD-------NATILVDSALLPALTDILFKS 415 (859)
Q Consensus 347 ~L~~la~~~~~~~~i~~~g-i~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~-------~~~~i~~~G~i~~Lv~lL~~~ 415 (859)
+++-|+.+++....+...+ ++.|+++++ .+.+.+.++.+|.||...+. ....|++.|+++ ++..|...
T Consensus 210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~r 288 (429)
T cd00256 210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQR 288 (429)
T ss_pred HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcC
Confidence 9999999887655555544 699999999 66788999999999988541 235667777755 45555542
Q ss_pred CCCCHHHHHHHHHHHHHh-------hc----------CCCccccccccc-------ccCccccc--chHHHHHHhhc-CC
Q 002999 416 HDASPELKELAAATIANV-------VS----------NPGCWELASADK-------LGHSMQSE--SIVSSLLGLLS-GV 468 (859)
Q Consensus 416 ~~~~~~~~~~a~~~L~nL-------~~----------~~~~~~~~~~~~-------~~~~l~~~--~~i~~Ll~LL~-~~ 468 (859)
.=.++++.+.--.+-..| ++ +.-.| .|++. +...+.+. ..+..|+.+|. +.
T Consensus 289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W--Sp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~ 366 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW--SPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV 366 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC--CCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 223344444332222222 11 01111 12221 11122222 35678899984 45
Q ss_pred ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 469 SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 469 ~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
+|.+..-|+.=+..++++-... +..+.+-||=..+..+|.+++++||..|+.++..|.
T Consensus 367 d~~~laVAc~Dige~vr~~P~g---r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 367 DPIILAVACHDIGEYVRHYPRG---KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CcceeehhhhhHHHHHHHCccH---HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 6666666776677777663221 455667899999999999999999999999988774
No 50
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.89 E-value=1.1e-06 Score=96.42 Aligned_cols=347 Identities=14% Similarity=0.166 Sum_probs=219.5
Q ss_pred HHHHHHHhC---ChhHHHHHHHHHHHhhCCCcch-HHHHHc-----CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 002999 366 AKVLVELLS---KPAGRAASLKALYNLSGLDDNA-TILVDS-----ALLPALTDILFKSHDASPELKELAAATIANVVSN 436 (859)
Q Consensus 366 i~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~-~~i~~~-----G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~ 436 (859)
+..++.+|+ .+++.++.+..+.-|....+.+ ..+.+. ....+++.+|.. .+.-+...|+.+|..+...
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~---~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR---QDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC---CchhHHHHHHHHHHHHHhc
Confidence 466677776 6677777777777777666544 344443 456778888854 4568999999999999876
Q ss_pred CCcccccccccccCcccccchHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC-
Q 002999 437 PGCWELASADKLGHSMQSESIVSSLLGLLSGVS-PQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE- 514 (859)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~-~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~- 514 (859)
...... .......+.-|...+++.+ .+.+..++.+|..|...+. .|..+.+.+|++.|+.+|+...
T Consensus 132 ~~~~~~--------~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~----~R~~f~~~~~v~~L~~~L~~~~~ 199 (429)
T cd00256 132 GLAKME--------GSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE----YRFAFVLADGVPTLVKLLSNATL 199 (429)
T ss_pred Cccccc--------hhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch----HHHHHHHccCHHHHHHHHhhccc
Confidence 543221 0111123345556666543 5788888999999988864 4666778889999999997644
Q ss_pred -hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcH-------HHHHHHHh
Q 002999 515 -VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEE-------EVKTLLEA 586 (859)
Q Consensus 515 -~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~-------~~~~l~~~ 586 (859)
..++.+++-+++.|+ ..++..+.+...+.|+.|+++++.... .++...+..+|.||...+. ....+++.
T Consensus 200 ~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~l~~i~k~s~K-EKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~ 276 (429)
T cd00256 200 GFQLQYQSIFCIWLLT--FNPHAAEVLKRLSLIQDLSDILKESTK-EKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC 276 (429)
T ss_pred cHHHHHHHHHHHHHHh--ccHHHHHhhccccHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc
Confidence 478899999999998 233355666667999999999998876 4666788899999876331 11444544
Q ss_pred ccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHh
Q 002999 587 TFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGL 666 (859)
Q Consensus 587 g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL 666 (859)
|. +.++..|..-+ + +|+++.+.+. .|-+.|... ++. +
T Consensus 277 ~l-~~~l~~L~~rk------------------------~---~DedL~edl~------~L~e~L~~~----~k~-----l 313 (429)
T cd00256 277 KV-LKTLQSLEQRK------------------------Y---DDEDLTDDLK------FLTEELKNS----VQD-----L 313 (429)
T ss_pred Ch-HHHHHHHhcCC------------------------C---CcHHHHHHHH------HHHHHHHHH----HHH-----c
Confidence 43 33444443310 0 2455444332 122222211 110 1
Q ss_pred hhhhhhcccc-cccCCCCCCCccccccccceecCCCCCCCCCccCCCCCC-cCC--cchhhhcCCchHHHhhhc-cCChh
Q 002999 667 KNLSEAGRSL-CAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCE-DDS--QLCLLKSNCIKPLVDLLA-EEDTN 741 (859)
Q Consensus 667 ~~ls~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~~~g~i~~Lv~lL~-~~~~~ 741 (859)
.++-.....+ +....|.+ +|....- .++ .|---+-..+..|+++|+ +.|+.
T Consensus 314 tsfD~Y~~El~sg~L~WSp------------------------~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 314 SSFDEYKSELRSGRLHWSP------------------------VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCHHHHHHHHhcCCccCCC------------------------CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 1111110000 01112222 2211000 000 010002236789999995 67889
Q ss_pred HHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHh
Q 002999 742 VEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLR 802 (859)
Q Consensus 742 v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~ 802 (859)
+...|+.=|+.++.. . | .|...+.+.||=..+.+++. |+|++++..|.-+++++.-
T Consensus 370 ~laVAc~Dige~vr~-~--P-~gr~i~~~lg~K~~vM~Lm~-h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRH-Y--P-RGKDVVEQLGGKQRVMRLLN-HEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHH-C--c-cHHHHHHHcCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 999999999999976 2 3 68888999999888999998 7999999999999999863
No 51
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.88 E-value=8.8e-10 Score=78.98 Aligned_cols=42 Identities=26% Similarity=0.620 Sum_probs=31.6
Q ss_pred CcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCC
Q 002999 79 CPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVT 122 (859)
Q Consensus 79 cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t 122 (859)
|||+.++|+|||+++|||+|++++|.+||.... +....||.+
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~--~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS--GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS--SST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC--CcCCCCcCC
Confidence 899999999999999999999999999998731 112579874
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=5.5e-05 Score=85.42 Aligned_cols=327 Identities=14% Similarity=0.112 Sum_probs=231.4
Q ss_pred CchHHHHHHhcCCC-HHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcCCCc--
Q 002999 240 GVTKSVIHSLIGNS-EKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKMERIEE-- 315 (859)
Q Consensus 240 g~i~~Lv~lL~~~~-~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~~~~-- 315 (859)
..|+.|+.-+.+.. .+-|+.|+..|..+|. .+|..++ .-++++|+..|. +..|++....++.++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg--a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG--AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH--HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 35788887776544 6779999999999987 4566665 447899999998 66799999999999999987653
Q ss_pred ----C-h----------HHHH-hcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC--ccHHHHH--HhhHHHHHHHhC-
Q 002999 316 ----I-V----------QPLA-AAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN--SCKEHIA--RQCAKVLVELLS- 374 (859)
Q Consensus 316 ----~-~----------~~i~-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~--~~~~~i~--~~gi~~Lv~lL~- 374 (859)
+ + ..++ ..+-|..|+..+...+-.++..+...|.++..+. +.+..+. -.|+..|+.+|+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 1 1222 3588999999999999999999999999987655 3355553 468999999999
Q ss_pred -ChhHHHHHHHHHHHhhCCCcchHHHHH-cCcHHHHHHHHhccC-CCCHHHHHHHHHHHHHhhcCCCcccccccccccCc
Q 002999 375 -KPAGRAASLKALYNLSGLDDNATILVD-SALLPALTDILFKSH-DASPELKELAAATIANVVSNPGCWELASADKLGHS 451 (859)
Q Consensus 375 -~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~G~i~~Lv~lL~~~~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 451 (859)
-..++..++-.|..|+.+..+.+.++. .++...|..++.... .+..-+.+.|+..|-||-.++...+. .
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~--------~ 249 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQN--------F 249 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhh--------H
Confidence 556788899999999998876655555 689999999998733 22346889999999999998876664 3
Q ss_pred ccccchHHHHHHhhcCC---C------hHHHH----HHHHHHHHhccC---ChhHHHHHHHHhhCCCHHHHHHhhcCCC-
Q 002999 452 MQSESIVSSLLGLLSGV---S------PQCQV----STLRILCGIASS---PQAAESVATHIKSGDGIKYIIQFLEHPE- 514 (859)
Q Consensus 452 l~~~~~i~~Ll~LL~~~---~------~~~~~----~a~~aL~~La~~---~~~~~~~~~~i~~~g~i~~Lv~lL~~~~- 514 (859)
..+.+.|+.|.++|... + ...+. .++.++..+..- +......++.+.+.+++..|..++-++.
T Consensus 250 FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v 329 (970)
T KOG0946|consen 250 FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV 329 (970)
T ss_pred HhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Confidence 56677999999888532 1 11222 244455555432 1222233467889999999999988874
Q ss_pred -hhHHHHHHHHHHHHhhhccHHHHHhcCCC----Cc--hH----HHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH
Q 002999 515 -VEHRTYAFRLTRILSERIGQDLAYALKPF----DK--LV----LFKDKILDNQSANCERSDAACILANIQLSEEEV 580 (859)
Q Consensus 515 -~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~----g~--i~----~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 580 (859)
.+++..+..++.+.. +++...++.+... +- .+ .|..+..+... ...|.+++.++..+..+|...
T Consensus 330 p~dIltesiitvAevV-Rgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~-~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 330 PADILTESIITVAEVV-RGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQP-FSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred cHhHHHHHHHHHHHHH-HhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCC-chHHHHHHHHHHHHHhcchhh
Confidence 378888888888887 4445555554432 11 12 22333333333 466777777777776666553
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.82 E-value=1.2e-09 Score=83.53 Aligned_cols=45 Identities=31% Similarity=0.689 Sum_probs=32.1
Q ss_pred CcccCcccccccCCCee-cCCCchhcHHHHHHHHHhcccCCCCCCCCCCC
Q 002999 75 KNFLCPLTKQVMKEPVV-LESAQAYERKAIEYWFERCLEDGRDPTCPVTG 123 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~-~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~ 123 (859)
..|.||||+..|+|||. ..|||+|||++|.+|+.. ++...||+++
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~----~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR----NGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT----TS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh----cCCCCCCCCC
Confidence 35999999999999996 599999999999999954 3367899964
No 54
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=5.4e-09 Score=112.41 Aligned_cols=68 Identities=18% Similarity=0.376 Sum_probs=62.3
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhc
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRN 148 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 148 (859)
..|.||||.+.|.+||+++|||+||+.||.+|+.. ...||.|+.++....+.+|..|.+.|+.|....
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~------~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN------QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC------CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 45999999999999999999999999999999976 568999999998789999999999999998654
No 55
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.75 E-value=2.4e-07 Score=100.09 Aligned_cols=225 Identities=18% Similarity=0.154 Sum_probs=160.4
Q ss_pred cHHHHHHHHhcC--CCCcchHHHHHHHHHHHhcccCcc-hHHHHHh------hCchHHHHHHhcCCCHHHHHHHHHHHHH
Q 002999 196 VVLLIVKLLKSS--SKSVGTILRSKALMALLSMAKDEE-SKKIMLE------EGVTKSVIHSLIGNSEKEKEYAVKLLLE 266 (859)
Q Consensus 196 ~i~~Lv~lL~~~--~~~~~~~~~~~al~~L~~L~~~~~-~r~~i~~------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~ 266 (859)
.+..++.+|+.- +. ++....+..+..+..++. ..+.+.. .....++++++.+++.-++..|+.+|..
T Consensus 56 ~~~~~l~lL~~~~~~~----d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 56 YASLFLNLLNKLSSND----DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp ------HHHHHH---H----HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcH----HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 466777887654 44 889999999999888743 3444443 1257889999999999999999999999
Q ss_pred hccChhhhhHhhhhhChHHHHHHhhcC---CCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh-----c--cC
Q 002999 267 FCIDEAYCKSVASEKGALVLLSSMTGN---LELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL-----C--QG 336 (859)
Q Consensus 267 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL-----~--~~ 336 (859)
+.........-.. .+.++.++.+|.+ +++.+.+..++.+|.+|...++.|..+.+.|+++.|+.+| . ..
T Consensus 132 Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 132 LLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp HHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred HHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCC
Confidence 9876544333221 4678888888872 2345567889999999999999999999999999999999 2 33
Q ss_pred ChHHHHHHHHHHHHhcCCCccHHHHHHhh-HHHHHHHhC---ChhHHHHHHHHHHHhhCCCc--chHHHHHcCcHHHHHH
Q 002999 337 SDNVQIEMAFLVGKLTLTNSCKEHIARQC-AKVLVELLS---KPAGRAASLKALYNLSGLDD--NATILVDSALLPALTD 410 (859)
Q Consensus 337 ~~~~~~~aa~~L~~la~~~~~~~~i~~~g-i~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~--~~~~i~~~G~i~~Lv~ 410 (859)
+..++.++.-+++-|+.+++....+...+ ++.|+++++ .+++.+.++.+|.||..... +...|+..|+++.+-.
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~ 290 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQN 290 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHH
Confidence 46778889999999999998877776555 699999998 78899999999999999886 7888888888776665
Q ss_pred HHhccCCCCHHHHHHH
Q 002999 411 ILFKSHDASPELKELA 426 (859)
Q Consensus 411 lL~~~~~~~~~~~~~a 426 (859)
+... .=.++++.+.-
T Consensus 291 L~~r-k~~Dedl~edl 305 (312)
T PF03224_consen 291 LSER-KWSDEDLTEDL 305 (312)
T ss_dssp HHSS---SSHHHHHHH
T ss_pred HhcC-CCCCHHHHHHH
Confidence 5543 22345655543
No 56
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=5.4e-06 Score=91.56 Aligned_cols=311 Identities=15% Similarity=0.088 Sum_probs=198.3
Q ss_pred hCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhh-H-hh-h-hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCK-S-VA-S-EKGALVLLSSMTGNLELPALSNLADEVFKKMERIE 314 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-~-i~-~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~ 314 (859)
...+|.|..+|.+.+....+-|..+|..++.+....- . .. + -.-.+|.++.+.+ +.+|.++..|..++...-...
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~-h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK-HPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh-CCChhHHHHHHhhhhheeecC
Confidence 3468999999999998899999999999998752211 0 00 0 0236888999998 789999999988866554321
Q ss_pred cChHHHHh-cCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHH-HhhHHHHHHHhC--ChhHHHHHHHHHHHhh
Q 002999 315 EIVQPLAA-AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIA-RQCAKVLVELLS--KPAGRAASLKALYNLS 390 (859)
Q Consensus 315 ~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~-~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls 390 (859)
+...+.. ...+..|..+-.+.+++++.+.+.+|..|......|..-. .+.++.+++.-+ +..+.-.|+.-...++
T Consensus 206 -~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 206 -TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred -cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 1222221 1345566667788999999999999988766544443322 223466666666 7888889999999999
Q ss_pred CCCcchHHHHH--cCcHHHHHHHHhccCCCC-------------------------------------------------
Q 002999 391 GLDDNATILVD--SALLPALTDILFKSHDAS------------------------------------------------- 419 (859)
Q Consensus 391 ~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~------------------------------------------------- 419 (859)
..+-.+..+.. ...||.|+.-|... +.+
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ys-d~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYS-DDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccc-cccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 88754544443 36777777655431 111
Q ss_pred -----HHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhc----CCChHHHHHHHHHHHHhccCChhH
Q 002999 420 -----PELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLS----GVSPQCQVSTLRILCGIASSPQAA 490 (859)
Q Consensus 420 -----~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~----~~~~~~~~~a~~aL~~La~~~~~~ 490 (859)
..+|..++.+|--|+. +.....++.++.+|+ +..=.+++.++-+|..+|.+-..
T Consensus 364 D~~~dWNLRkCSAAaLDVLan----------------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~- 426 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLAN----------------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ- 426 (885)
T ss_pred cccccccHhhccHHHHHHHHH----------------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh-
Confidence 1122222222222211 223344555555554 33337888888888888876311
Q ss_pred HHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHH
Q 002999 491 ESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACIL 570 (859)
Q Consensus 491 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L 570 (859)
-+...+- ..+|.|+++|.+..+-||.-+||+|...+.+...+-...... ..+..|++.+-+++. .||.+|+.++
T Consensus 427 -g~~p~Lp--eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~ll~~llD~NK--~VQEAAcsAf 500 (885)
T KOG2023|consen 427 -GFVPHLP--ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGLLRRLLDSNK--KVQEAACSAF 500 (885)
T ss_pred -hcccchH--HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHHHHHHhcccH--HHHHHHHHHH
Confidence 1111111 247888999999999999999999998874332222222222 356667776767776 8999999999
Q ss_pred HHhcC
Q 002999 571 ANIQL 575 (859)
Q Consensus 571 ~~L~~ 575 (859)
+.+-.
T Consensus 501 AtleE 505 (885)
T KOG2023|consen 501 ATLEE 505 (885)
T ss_pred HHHHH
Confidence 88754
No 57
>PF05536 Neurochondrin: Neurochondrin
Probab=98.69 E-value=5.1e-05 Score=87.42 Aligned_cols=413 Identities=15% Similarity=0.083 Sum_probs=244.2
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc----hHHHHHhhCchHHHHHHhcC-------CCHHHHHHHHHHHH
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE----SKKIMLEEGVTKSVIHSLIG-------NSEKEKEYAVKLLL 265 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~----~r~~i~~~g~i~~Lv~lL~~-------~~~~~~~~A~~~L~ 265 (859)
+...+++|++.+. .-|..++-.+.++..+.+ .++.|.++=+.+-|-++|++ +....+.-|+.+|.
T Consensus 7 l~~c~~lL~~~~D----~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 7 LEKCLSLLKSADD----TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHhccCCc----HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 4567788888875 788889999999888732 35567787778999999987 33567888999999
Q ss_pred HhccChhhh--hHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHH
Q 002999 266 EFCIDEAYC--KSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIE 343 (859)
Q Consensus 266 ~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 343 (859)
.++.+++.. .++ -+-||.|++++..+.+......+..+|..++..++.+..+++.|+|+.|++.+.+ .+.....
T Consensus 83 ~f~~~~~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~ 158 (543)
T PF05536_consen 83 AFCRDPELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEI 158 (543)
T ss_pred HHcCChhhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence 999987654 333 3479999999984444588999999999999999999999999999999999977 5566778
Q ss_pred HHHHHHHhcCCCccHHHHH-HhhH----HHHHHHhC--ChhHHHHHHHHHHHhhCCCcc--hHHHHHc----CcHHHHHH
Q 002999 344 MAFLVGKLTLTNSCKEHIA-RQCA----KVLVELLS--KPAGRAASLKALYNLSGLDDN--ATILVDS----ALLPALTD 410 (859)
Q Consensus 344 aa~~L~~la~~~~~~~~i~-~~gi----~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~--~~~i~~~----G~i~~Lv~ 410 (859)
+..+|.++....+.+..-. ..++ +.+-..+. ....+-..+..|.++-...+. ....... .+...|..
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 8888888766443221111 1122 33333333 334455566667666544421 1111122 23334455
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhcCCCc-ccccccccccCcccccchHHHHHHhh---------------cCCCh-H--
Q 002999 411 ILFKSHDASPELKELAAATIANVVSNPGC-WELASADKLGHSMQSESIVSSLLGLL---------------SGVSP-Q-- 471 (859)
Q Consensus 411 lL~~~~~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~~~~~~l~~~~~i~~Ll~LL---------------~~~~~-~-- 471 (859)
+|.+ ......+..++.+.+.|...... |.-. +.. .-...+...++++. +.+.. .
T Consensus 239 iL~s--r~~~~~R~~al~Laa~Ll~~~G~~wl~~--~~~---~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~ 311 (543)
T PF05536_consen 239 ILQS--RLTPSQRDPALNLAASLLDLLGPEWLFA--DDK---KSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQ 311 (543)
T ss_pred HHhc--CCCHHHHHHHHHHHHHHHHHhChHhhcC--CCC---CCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHH
Confidence 5544 45567787887777777654321 2110 000 01112333333322 11111 1
Q ss_pred --------HHHHHHHHHHHhccC------ChhHHHHHHHHhhCCCHHHHHHhhcCCCh------hHHHHHHHHHHHHhhh
Q 002999 472 --------CQVSTLRILCGIASS------PQAAESVATHIKSGDGIKYIIQFLEHPEV------EHRTYAFRLTRILSER 531 (859)
Q Consensus 472 --------~~~~a~~aL~~La~~------~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~------~v~~~A~~~L~~Ls~~ 531 (859)
+.+..+..+++-+.. ++....++..+. +.+...+.+|+.-.+ ..-..+.++|+.--..
T Consensus 312 ~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~--e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaE 389 (543)
T PF05536_consen 312 RLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLS--ETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAE 389 (543)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHh
Confidence 112222333332221 111222233332 345556666654332 2334456666543323
Q ss_pred ccHHHHHhcCCCCchHHHHHhhccCCCc--------hhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccc
Q 002999 532 IGQDLAYALKPFDKLVLFKDKILDNQSA--------NCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSF 603 (859)
Q Consensus 532 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~--------~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~ 603 (859)
.+...++.+. |.++.++.+.+.+... .+....-.-+|..++..+...+.++..|+...+.+.+...-+..
T Consensus 390 e~~~lr~~v~--~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~~l~~~~~~~ 467 (543)
T PF05536_consen 390 ETSALRKEVY--GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCDDLLKILQSP 467 (543)
T ss_pred ChHHHHHHHH--HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHHHHHHHHHhc
Confidence 4444666665 7899999999877651 12345566777888887777799999999888777665433211
Q ss_pred cCCCCC-Ccc-hhHHhhhhhhhhcccC
Q 002999 604 NTRSSR-PIS-NIAEGLLGLLLHFTRS 628 (859)
Q Consensus 604 ~~r~~~-~~~-~~~e~~~~~L~~~~~~ 628 (859)
.+.... ... .-+..+.+++.|++-.
T Consensus 468 ~~~~~~~~~~~~~l~~~c~illNl~~~ 494 (543)
T PF05536_consen 468 SGDDDAEDSAEMALVTACGILLNLVVT 494 (543)
T ss_pred ccCcchhhhhHHHHHHHHHHHHHHHhc
Confidence 110000 000 0234456777777653
No 58
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.66 E-value=8.9e-07 Score=95.67 Aligned_cols=219 Identities=15% Similarity=0.064 Sum_probs=159.8
Q ss_pred hhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHh------cCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc
Q 002999 158 ETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRN------AGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE 231 (859)
Q Consensus 158 ~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~------~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~ 231 (859)
..|...+++.+.++..+..+.++..+++.....+.. .....++++++.++|. .++..|+..|..|.....
T Consensus 62 ~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~----~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 62 NLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS----FIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH----HHHHHHHHHHHHHHTSTT
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH----HHHHHHHHHHHHHHHcCC
Confidence 334333234456666788899998888866655554 2357788888888877 999999999999988744
Q ss_pred hHHHHHhhCchHHHHHHhcC----CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhh------cCCCChHHHH
Q 002999 232 SKKIMLEEGVTKSVIHSLIG----NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMT------GNLELPALSN 301 (859)
Q Consensus 232 ~r~~i~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL------~~~~~~~~~~ 301 (859)
.+..-...+.++.++..|++ ++.+.+..|+.+|.+|...++++..+.. .|+++.|+.+| .+..+..++.
T Consensus 138 ~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 138 KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 43333335667888888775 3445678899999999999999999885 89999999999 3456678889
Q ss_pred HHHHHHHHhcCCCcChHHHHhcCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCCc--cHHHHHHhhHHHHHHHhC----
Q 002999 302 LADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQ-GSDNVQIEMAFLVGKLTLTNS--CKEHIARQCAKVLVELLS---- 374 (859)
Q Consensus 302 ~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~la~~~~--~~~~i~~~gi~~Lv~lL~---- 374 (859)
.++-+++-|+.+++....+.+.+.|+.|+++++. ..+.+..-+..+|.|+...+. +...|...+++++++.|.
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~ 296 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW 296 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999964 456777778889999998776 677788888877777776
Q ss_pred -ChhHHHH
Q 002999 375 -KPAGRAA 381 (859)
Q Consensus 375 -~~~~~~~ 381 (859)
|+++.+.
T Consensus 297 ~Dedl~ed 304 (312)
T PF03224_consen 297 SDEDLTED 304 (312)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 6666554
No 59
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.49 E-value=6.5e-08 Score=69.14 Aligned_cols=39 Identities=21% Similarity=0.556 Sum_probs=24.1
Q ss_pred CcccccccCC----CeecCCCchhcHHHHHHHHHhcccCCCCCCCC
Q 002999 79 CPLTKQVMKE----PVVLESAQAYERKAIEYWFERCLEDGRDPTCP 120 (859)
Q Consensus 79 cpi~~~~m~d----Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP 120 (859)
||||.+ |.+ |++++|||+|+++||++++..+. +....||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~--~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSD--RNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S---S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCC--CCeeeCc
Confidence 999999 999 99999999999999999999721 1256777
No 60
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.46 E-value=9.6e-08 Score=67.76 Aligned_cols=38 Identities=32% Similarity=0.862 Sum_probs=32.7
Q ss_pred CcccccccCCC-eecCCCchhcHHHHHHHHHhcccCCCCCCCCCC
Q 002999 79 CPLTKQVMKEP-VVLESAQAYERKAIEYWFERCLEDGRDPTCPVT 122 (859)
Q Consensus 79 cpi~~~~m~dP-v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t 122 (859)
|||+.+.+.|| |+++|||+|++++|++|++. +..||++
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~------~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK------NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC------TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC------cCCCcCC
Confidence 89999999999 47899999999999999987 5789974
No 61
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.46 E-value=7.4e-05 Score=79.22 Aligned_cols=326 Identities=15% Similarity=0.125 Sum_probs=215.3
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhh-------CchHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEE-------GVTKSVIHSLIGNSEKEKEYAVKLLLEFC 268 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-------g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls 268 (859)
.+.+++.+++..+.+ +.....+..+-.+-..+..|..+... -.-+..+.+|..++.-..+.+.+++..++
T Consensus 66 ~v~~fi~LlS~~~kd---d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKD---DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHhchhhhH---HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 456778888765442 56666777666666655555544431 23678889999999888887889998887
Q ss_pred cChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh--ccCChHHHHHHHH
Q 002999 269 IDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL--CQGSDNVQIEMAF 346 (859)
Q Consensus 269 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL--~~~~~~~~~~aa~ 346 (859)
.....+-......=....|...++++.++.....++.+|..+...++.|-.++.+.++..|+..+ ...+..++.+..-
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 65433221111111234455556655778888889999999999999999999999999999999 3456788899999
Q ss_pred HHHHhcCCCccHHHHHHhh-HHHHHHHhC---ChhHHHHHHHHHHHhhCCCcc-------hHHHHHcCcHHHHHHHHhcc
Q 002999 347 LVGKLTLTNSCKEHIARQC-AKVLVELLS---KPAGRAASLKALYNLSGLDDN-------ATILVDSALLPALTDILFKS 415 (859)
Q Consensus 347 ~L~~la~~~~~~~~i~~~g-i~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~-------~~~i~~~G~i~~Lv~lL~~~ 415 (859)
+++-|..++.-.+.+.... ++.|.++++ .+.+.+.++.+++|+....+. ...++..++.+ -++.|...
T Consensus 223 ciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k-~l~~L~~r 301 (442)
T KOG2759|consen 223 CIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLK-TLQSLEER 301 (442)
T ss_pred HHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchH-HHHHHHhc
Confidence 9999999988877775555 699999999 678889999999999887632 23455555544 45555542
Q ss_pred CCCCHHHHHHHHHHHHHh-------hcCCC--------ccccccccc-------ccCccccc--chHHHHHHhhcCCC-h
Q 002999 416 HDASPELKELAAATIANV-------VSNPG--------CWELASADK-------LGHSMQSE--SIVSSLLGLLSGVS-P 470 (859)
Q Consensus 416 ~~~~~~~~~~a~~~L~nL-------~~~~~--------~~~~~~~~~-------~~~~l~~~--~~i~~Ll~LL~~~~-~ 470 (859)
.=.+.++.+..-.+-..| ++-++ .....|.+. +...+-+. ..+..|+++|...+ |
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 222334443332222222 11100 000111111 11112211 35677888886654 6
Q ss_pred HHHHHHHHHHHHhccC-ChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 471 QCQVSTLRILCGIASS-PQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 471 ~~~~~a~~aL~~La~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
.+..-|+.=+....++ |.. +..+.+.||=+.+.++|.+++++||.+|+.++-.|.
T Consensus 382 ~iL~VAc~DIge~Vr~yP~g----k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEG----KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred ceeehhhhhHHHHHHhCchH----hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5555555555555444 433 456778899999999999999999999999887764
No 62
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00094 Score=75.69 Aligned_cols=344 Identities=13% Similarity=0.084 Sum_probs=198.5
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHh----cCCCH-HHHHHHHHHHHHhccChhhh
Q 002999 200 IVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSL----IGNSE-KEKEYAVKLLLEFCIDEAYC 274 (859)
Q Consensus 200 Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL----~~~~~-~~~~~A~~~L~~Ls~~~~~~ 274 (859)
+++.|++..+ .....|..++..++.-+ .-.+..|.|+..| ..+.+ -+++.++.+|..++.+-+..
T Consensus 95 il~tL~~~ep----~~~s~Aaq~va~IA~~E------lP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe 164 (859)
T KOG1241|consen 95 ILRTLGSPEP----RRPSSAAQCVAAIACIE------LPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE 164 (859)
T ss_pred HHHHcCCCCC----CccchHHHHHHHHHHhh------CchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH
Confidence 4455665555 55555666666555431 0023344444444 33333 47888999999999873322
Q ss_pred hHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcCCCc-Ch-HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 002999 275 KSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKMERIEE-IV-QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKL 351 (859)
Q Consensus 275 ~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~~~~-~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~l 351 (859)
......+.++.+++.-.+ ..++..++-.|..+|.|--.... |- ..+-+.=.+....+.-++++.+++..+..+|.++
T Consensus 165 vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkI 244 (859)
T KOG1241|consen 165 VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKI 244 (859)
T ss_pred HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHH
Confidence 333333456677776555 45677888899999988743211 11 1111111223334444567778888888888877
Q ss_pred cCCC--ccHHHHHHhhHH-HHHHHhC-ChhHHHHHHHHHHHhhCCC-c---------------chHHHHH---cCcHHHH
Q 002999 352 TLTN--SCKEHIARQCAK-VLVELLS-KPAGRAASLKALYNLSGLD-D---------------NATILVD---SALLPAL 408 (859)
Q Consensus 352 a~~~--~~~~~i~~~gi~-~Lv~lL~-~~~~~~~a~~aL~~Ls~~~-~---------------~~~~i~~---~G~i~~L 408 (859)
..-. -....|.+.-.. .+-.+-+ ++++.-.+..-=.++|... + ....+.+ .+++|.|
T Consensus 245 m~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~L 324 (859)
T KOG1241|consen 245 MSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVL 324 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHH
Confidence 5422 223344443332 2333333 6777766666555555321 1 0011111 2678899
Q ss_pred HHHHhccC----CCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHH----hhcCCChHHHHHHHHHH
Q 002999 409 TDILFKSH----DASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLG----LLSGVSPQCQVSTLRIL 480 (859)
Q Consensus 409 v~lL~~~~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~----LL~~~~~~~~~~a~~aL 480 (859)
+++|..+. ++++.....|...|.-++.+.++ .++++.+. -+++++=.-++.++.++
T Consensus 325 l~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D----------------~Iv~~Vl~Fiee~i~~pdwr~reaavmAF 388 (859)
T KOG1241|consen 325 LELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD----------------DIVPHVLPFIEENIQNPDWRNREAAVMAF 388 (859)
T ss_pred HHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc----------------cchhhhHHHHHHhcCCcchhhhhHHHHHH
Confidence 99998732 23445555555555555443322 22333333 44555557777888888
Q ss_pred HHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCch
Q 002999 481 CGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSAN 560 (859)
Q Consensus 481 ~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~ 560 (859)
..+-..+... .. ..+ -.++++.++.++.+++--++..+.|.|..+++...............+..|+.-|.+..
T Consensus 389 GSIl~gp~~~-~L-t~i-V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP--- 462 (859)
T KOG1241|consen 389 GSILEGPEPD-KL-TPI-VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP--- 462 (859)
T ss_pred HhhhcCCchh-hh-hHH-HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc---
Confidence 8877766532 22 222 34799999999998888899999999999985444322222222355666777666553
Q ss_pred hHHHHHHHHHHHhcC
Q 002999 561 CERSDAACILANIQL 575 (859)
Q Consensus 561 ~~~~~A~~~L~~L~~ 575 (859)
.+...++|++-+|+.
T Consensus 463 rva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 463 RVASNVCWAFISLAE 477 (859)
T ss_pred hHHHHHHHHHHHHHH
Confidence 678899999999984
No 63
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=0.00017 Score=73.53 Aligned_cols=325 Identities=16% Similarity=0.169 Sum_probs=209.2
Q ss_pred HHHHHHHHHhcCCcch----hHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHH-
Q 002999 173 ALDIVFKISEEHPSNR----YRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIH- 247 (859)
Q Consensus 173 al~~L~~l~~~~~~~r----~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~- 247 (859)
+++.+..+..+.+.|- ..++++|..+.++..+...+. ++-..|...+..++..++.-+.|.+......+-.
T Consensus 102 ackqigcilEdcDtnaVseillvvNaeilklildcIggedd----eVAkAAiesikrialfpaaleaiFeSellDdlhlr 177 (524)
T KOG4413|consen 102 ACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD----EVAKAAIESIKRIALFPAALEAIFESELLDDLHLR 177 (524)
T ss_pred hHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH----HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHh
Confidence 4555555555555432 235678899999999988877 8999999999999988887778877766554432
Q ss_pred -HhcCCCHHHHHHHHHHHHHhcc-ChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCC
Q 002999 248 -SLIGNSEKEKEYAVKLLLEFCI-DEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGR 325 (859)
Q Consensus 248 -lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~ 325 (859)
+-...+.-.|.....++.++.. +++..... ...|.+..|..=|...+|.-+..++.+....|+.....+..+.+.|.
T Consensus 178 nlaakcndiaRvRVleLIieifSiSpesanec-kkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQegl 256 (524)
T KOG4413|consen 178 NLAAKCNDIARVRVLELIIEIFSISPESANEC-KKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGL 256 (524)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHh-hhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhH
Confidence 2223344566677777777654 44444333 35888888888888568888889999999999988888999999999
Q ss_pred hHHHHHHhcc--CChHHHHHHH----HHHHHhcCCCccHHHHHHh---hHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc
Q 002999 326 FEPLINRLCQ--GSDNVQIEMA----FLVGKLTLTNSCKEHIARQ---CAKVLVELLS--KPAGRAASLKALYNLSGLDD 394 (859)
Q Consensus 326 i~~Lv~lL~~--~~~~~~~~aa----~~L~~la~~~~~~~~i~~~---gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~ 394 (859)
|+.+..++.- .++-.+..+. ..+++.+.-+-.-+.+.+. .+.....++. ++..++.|..++..|.++.+
T Consensus 257 IdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 257 IDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence 9999888842 2222222222 3344444433233333222 2334445555 89999999999999999889
Q ss_pred chHHHHHcCc--HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccC------------cccccchHHH
Q 002999 395 NATILVDSAL--LPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGH------------SMQSESIVSS 460 (859)
Q Consensus 395 ~~~~i~~~G~--i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~------------~l~~~~~i~~ 460 (859)
..+.+...|- ...++.-...++ ...-++.+..+|.++++.-.-......+.... .-..-.....
T Consensus 337 GadlllkTgppaaehllarafdqn--ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleL 414 (524)
T KOG4413|consen 337 GADLLLKTGPPAAEHLLARAFDQN--AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLEL 414 (524)
T ss_pred hhHHHhccCChHHHHHHHHHhccc--ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHH
Confidence 8888887764 333333332222 22346677778888776543322211111000 0011133445
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHH
Q 002999 461 LLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYII 507 (859)
Q Consensus 461 Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv 507 (859)
++.+++.+.|++...+++++..++..|-.. +..+...+.+....
T Consensus 415 FlgilqQpfpEihcAalktfTAiaaqPWal---keifakeefieiVt 458 (524)
T KOG4413|consen 415 FLGILQQPFPEIHCAALKTFTAIAAQPWAL---KEIFAKEEFIEIVT 458 (524)
T ss_pred HHHHHcCCChhhHHHHHHHHHHHHcCcHHH---HHHhcCccceeeec
Confidence 667778889999999999999999887542 33344444444443
No 64
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.44 E-value=8.8e-05 Score=78.68 Aligned_cols=348 Identities=14% Similarity=0.144 Sum_probs=214.2
Q ss_pred HHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHH-------cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 366 AKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVD-------SALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 366 i~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~-------~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
+.+++.+++ .++.....+..+.-+-..+..+..+.. .-.-++.+.+|.. .+.-+.+.+.++++.++.
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r---~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR---QDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc---CChHHHHHHHHHHHHHHH
Confidence 456666666 556666666666666555544433332 1235667788854 456777779999998887
Q ss_pred CCCcccccccccccCcccccchH-HHHHHhhcC-CChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcC-
Q 002999 436 NPGCWELASADKLGHSMQSESIV-SSLLGLLSG-VSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEH- 512 (859)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~~~~i-~~Ll~LL~~-~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~- 512 (859)
....... ....... ..|-..+++ .+++....++++|..|...+. .|-.+..++|+..++..+-+
T Consensus 144 ~g~~~~~---------~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e----yR~~~v~adg~~~l~~~l~s~ 210 (442)
T KOG2759|consen 144 FGNCKME---------LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE----YRYAFVIADGVSLLIRILAST 210 (442)
T ss_pred hcccccc---------chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc----hhheeeecCcchhhHHHHhcc
Confidence 6644331 1111222 223334444 455778888999999988764 46677788999999998843
Q ss_pred C-ChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-------HHHH
Q 002999 513 P-EVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV-------KTLL 584 (859)
Q Consensus 513 ~-~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-------~~l~ 584 (859)
. +-.++...+.+++.|+ .++..++.+...+.|+.|..++++... ..|-...++++.|+....+.. ..++
T Consensus 211 ~~~~QlQYqsifciWlLt--Fn~~~ae~~~~~~li~~L~~Ivk~~~K-EKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv 287 (442)
T KOG2759|consen 211 KCGFQLQYQSIFCIWLLT--FNPHAAEKLKRFDLIQDLSDIVKESTK-EKVTRIVLAIFRNLLDKGPDRETKKDIASQMV 287 (442)
T ss_pred CcchhHHHHHHHHHHHhh--cCHHHHHHHhhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 2 3478899999999996 556677788777899999999998876 466677888899987655321 3344
Q ss_pred HhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 002999 585 EATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAH 664 (859)
Q Consensus 585 ~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~ 664 (859)
..++. ..++.|..-+ ..|+++...+ .-|.+-|..+ +|.
T Consensus 288 ~~~v~-k~l~~L~~rk---------------------------ysDEDL~~di------~~L~e~L~~s----vq~---- 325 (442)
T KOG2759|consen 288 LCKVL-KTLQSLEERK---------------------------YSDEDLVDDI------EFLTEKLKNS----VQD---- 325 (442)
T ss_pred hcCch-HHHHHHHhcC---------------------------CCcHHHHHHH------HHHHHHHHHH----HHh----
Confidence 44433 3333333200 0244443322 1222222221 111
Q ss_pred Hhhhhhhh-cccccccCCCCCCC-ccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccC-Chh
Q 002999 665 GLKNLSEA-GRSLCAEDTGSPTP-RRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEE-DTN 741 (859)
Q Consensus 665 aL~~ls~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~ 741 (859)
|..+=.. ++-.+....|.+++ ...+|+--..+|. ++.| ..+..|+.+|+.. |+-
T Consensus 326 -LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rln-----------------enny-----ellkiL~~lLe~s~Dp~ 382 (442)
T KOG2759|consen 326 -LSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLN-----------------ENNY-----ELLKILIKLLETSNDPI 382 (442)
T ss_pred -hccHHHHHHHHHhCCcCCCccccccchHHHhHHHHh-----------------hccH-----HHHHHHHHHHhcCCCCc
Confidence 1111000 00011122332221 1111110011111 1222 3678899999965 589
Q ss_pred HHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHh
Q 002999 742 VEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLR 802 (859)
Q Consensus 742 v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~ 802 (859)
+...|+.=++.+... - | +|...+.+.||=..+.+++. |+|++++-+|.-+++++..
T Consensus 383 iL~VAc~DIge~Vr~-y--P-~gk~vv~k~ggKe~vM~Lln-h~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRH-Y--P-EGKAVVEKYGGKERVMNLLN-HEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eeehhhhhHHHHHHh-C--c-hHhHHHHHhchHHHHHHHhc-CCCchHHHHHHHHHHHHHh
Confidence 999999999999976 2 3 68999999999999999998 7999999999999999874
No 65
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=8.6e-06 Score=85.17 Aligned_cols=184 Identities=17% Similarity=0.134 Sum_probs=151.5
Q ss_pred CCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCcc-HHHHHHh-hHHHHHH
Q 002999 294 LELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSC-KEHIARQ-CAKVLVE 371 (859)
Q Consensus 294 ~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~-~~~i~~~-gi~~Lv~ 371 (859)
+-+.+-++.|..-|..++.+=+|-..+...|+..+++..+.+.+..++..||++|+.++.++.- +..+.+. |.+.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 5567778888888888888888889999999999999999999999999999999999987754 6666554 5699999
Q ss_pred HhC---ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCccccccccc
Q 002999 372 LLS---KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADK 447 (859)
Q Consensus 372 lL~---~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 447 (859)
+|. +..++..|+.|+.+|-.+. .....+...++...|...|.+ ++.+...+.+++..+..|.........
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~-~~~~~~lkrK~~~Ll~~Ll~~~~s~~d----- 247 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS-NNTSVKLKRKALFLLSLLLQEDKSDED----- 247 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhhhhh-----
Confidence 998 5567889999999999987 678888999999999999987 345678999999999999876644332
Q ss_pred ccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 002999 448 LGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASS 486 (859)
Q Consensus 448 ~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~ 486 (859)
.+...++...+..+....+.++++.++.++..+...
T Consensus 248 ---~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 248 ---IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred ---HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 344556666777777777889999998888776554
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00031 Score=81.21 Aligned_cols=361 Identities=12% Similarity=0.118 Sum_probs=229.3
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHHh----cCcHHHHHHHHhc-CCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCch
Q 002999 168 DGLDKALDIVFKISEEHPSNRYRVRN----AGVVLLIVKLLKS-SSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVT 242 (859)
Q Consensus 168 ~~~~~al~~L~~l~~~~~~~r~~i~~----~g~i~~Lv~lL~~-~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i 242 (859)
+.+.-+|..|+++...++.--..+.. .|-.+.+..+|.+ +++ .++..|+..+..+..+.+.-..|+..|.+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~----~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL 1815 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHP----KLQILALQVILLATANKECVTDLATCNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCc----hHHHHHHHHHHHHhcccHHHHHHHhhhHH
Confidence 35556899999999888854333222 3677888888876 455 89999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC----cChH
Q 002999 243 KSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIE----EIVQ 318 (859)
Q Consensus 243 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~----~~~~ 318 (859)
..|+.+|.+. +..++.++.+|+.|+.+.+..+.-. .+|++..+..++..+..+..+..++..|..|...+ .-+.
T Consensus 1816 ~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~-~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~I 1893 (2235)
T KOG1789|consen 1816 TTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEAL-EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTI 1893 (2235)
T ss_pred HHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHH-hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceee
Confidence 9999999775 6889999999999999988766655 48999999999887788889999999999997543 2222
Q ss_pred HHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHH-----H---HhhHHHHHH-HhC----ChhHH------
Q 002999 319 PLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHI-----A---RQCAKVLVE-LLS----KPAGR------ 379 (859)
Q Consensus 319 ~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i-----~---~~gi~~Lv~-lL~----~~~~~------ 379 (859)
.+++- .-..++..++++++ .+..++ -...++-+.| . .+-+..++. +.+ ++.+.
T Consensus 1894 TL~kF-LP~~f~d~~RD~PE----AaVH~f---E~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEq 1965 (2235)
T KOG1789|consen 1894 TLIKF-LPEIFADSLRDSPE----AAVHMF---ESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQ 1965 (2235)
T ss_pred ehHHh-chHHHHHHHhcCHH----HHHHHH---hccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchh
Confidence 22220 11224444544432 111222 1222222222 0 011111111 111 11110
Q ss_pred ---------HHHHH--HHHHhhCCC----cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccc
Q 002999 380 ---------AASLK--ALYNLSGLD----DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELAS 444 (859)
Q Consensus 380 ---------~~a~~--aL~~Ls~~~----~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 444 (859)
+.+.+ .++..-..+ .+.+ ..-.|.++.++++|... .+.....+--..++-.|....+....
T Consensus 1966 sAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk-~FL~~LLek~lelm~~~-~peqh~l~lLt~A~V~L~r~hP~LAD-- 2041 (2235)
T KOG1789|consen 1966 SAGTSEADKECAVGGSINREFVVGPGFNLRHPK-LFLTELLEKVLELMSRP-TPEQHELDLLTKAFVELVRHHPNLAD-- 2041 (2235)
T ss_pred hcchhhhccCcccchhhhHHHhhCCCCcccCHH-HHHHHHHHHHHHHhcCC-CcccchhHHHHHHHHHHHHhCcchhh--
Confidence 00111 111111111 1112 22236677777887652 23333344444444455555555443
Q ss_pred cccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHH
Q 002999 445 ADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRL 524 (859)
Q Consensus 445 ~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~ 524 (859)
.+-.-|.+|+++.-+...+..+-..|+++|..|+.+.. ..+++.....+..++..|...-.-+ --|+.+
T Consensus 2042 ------qip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~----C~~AMA~l~~i~~~m~~mkK~~~~~-GLA~Ea 2110 (2235)
T KOG1789|consen 2042 ------QLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF----CCDAMAQLPCIDGIMKSMKKQPSLM-GLAAEA 2110 (2235)
T ss_pred ------hCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH----HHHHHhccccchhhHHHHHhcchHH-HHHHHH
Confidence 46678999999998866655566889999999988853 3566777777777888776544433 367888
Q ss_pred HHHHhhhccHHHHHhcCCCCchHHHHHhhccCC
Q 002999 525 TRILSERIGQDLAYALKPFDKLVLFKDKILDNQ 557 (859)
Q Consensus 525 L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 557 (859)
|..+.....++......+.|.++.|+++|....
T Consensus 2111 lkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2111 LKRLMKRNTGELVAQMLKCGLVPYLLQLLDSST 2143 (2235)
T ss_pred HHHHHHHhHHHHHHHHhccCcHHHHHHHhcccc
Confidence 888774445556566667799999999997653
No 67
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.36 E-value=0.004 Score=72.21 Aligned_cols=447 Identities=14% Similarity=0.105 Sum_probs=246.3
Q ss_pred HHhhhhcCCCccchHHHHHHHHHHHHhc-CCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCc--ch
Q 002999 156 VVETLRKENPEVDGLDKALDIVFKISEE-HPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDE--ES 232 (859)
Q Consensus 156 l~~~L~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~--~~ 232 (859)
.+++|.....|+++.+.|...+..+... .+..+..+ ...+|.+++-|++ . -.|..|+++|..++..+ -+
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~n--E----iTRl~AvkAlt~Ia~S~l~i~ 644 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGN--E----ITRLTAVKALTLIAMSPLDID 644 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhc--h----hHHHHHHHHHHHHHhccceee
Confidence 4556776667776665566655544321 11111111 1234555555554 3 67899999999998762 22
Q ss_pred HHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChh--hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 002999 233 KKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEA--YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKM 310 (859)
Q Consensus 233 r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL 310 (859)
...+. ..+++.|...++......+.....++-.|..+.. ...... .-++..+-.++. ..|..+.+.|...|..+
T Consensus 645 l~~~l-~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~--e~vL~el~~Lis-esdlhvt~~a~~~L~tl 720 (1233)
T KOG1824|consen 645 LSPVL-TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL--EAVLVELPPLIS-ESDLHVTQLAVAFLTTL 720 (1233)
T ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH--HHHHHHhhhhhh-HHHHHHHHHHHHHHHHH
Confidence 23333 2358888888887766666666666666654421 111111 224445555555 56777888999999999
Q ss_pred cCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHH--hcCCC-ccHHHHHHhhHHHHHHHhC----Ch-------
Q 002999 311 ERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGK--LTLTN-SCKEHIARQCAKVLVELLS----KP------- 376 (859)
Q Consensus 311 ~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~--la~~~-~~~~~i~~~gi~~Lv~lL~----~~------- 376 (859)
.........-+..-.++.++.+++++-.......+....- +.... .+. +...|+.++. +.
T Consensus 721 ~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l------~y~~l~s~lt~PV~~~~~~~l~k 794 (1233)
T KOG1824|consen 721 AIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL------DYISLLSLLTAPVYEQVTDGLHK 794 (1233)
T ss_pred HhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc------cHHHHHHHHcCCcccccccchhH
Confidence 8877766666667789999999987654433333322111 11111 111 1344555554 11
Q ss_pred hHHHHHHHHHHHhhCCCc--chHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccc
Q 002999 377 AGRAASLKALYNLSGLDD--NATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQS 454 (859)
Q Consensus 377 ~~~~~a~~aL~~Ls~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 454 (859)
..-..-+.|.+.|+...+ ++. ....|+.-+++. ..+..++.-|.-+|..+-.+.. ....
T Consensus 795 qa~~siA~cvA~Lt~~~~~~s~s------~a~kl~~~~~s~-~s~~~ikvfa~LslGElgr~~~------------~s~~ 855 (1233)
T KOG1824|consen 795 QAYYSIAKCVAALTCACPQKSKS------LATKLIQDLQSP-KSSDSIKVFALLSLGELGRRKD------------LSPQ 855 (1233)
T ss_pred HHHHHHHHHHHHHHHhccccchh------HHHHHHHHHhCC-CCchhHHHHHHhhhhhhccCCC------------CCcc
Confidence 111123333444433222 221 233455544442 2344666666666665533322 1223
Q ss_pred cchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCCh--hHHHHHHHHHHHHhhhc
Q 002999 455 ESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEV--EHRTYAFRLTRILSERI 532 (859)
Q Consensus 455 ~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~A~~~L~~Ls~~~ 532 (859)
.+.-..++.-+++++.+++..|..+|.+++.++-. .-+|.++....+... .+-..+.+-. +....
T Consensus 856 ~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~-----------~yLpfil~qi~sqpk~QyLLLhSlkev--i~~~s 922 (1233)
T KOG1824|consen 856 NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP-----------KYLPFILEQIESQPKRQYLLLHSLKEV--IVSAS 922 (1233)
T ss_pred hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH-----------hHHHHHHHHHhcchHhHHHHHHHHHHH--HHHhc
Confidence 44555778888999999999999999999986532 135666666655433 2222222211 11111
Q ss_pred cHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcc
Q 002999 533 GQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPIS 612 (859)
Q Consensus 533 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~ 612 (859)
.+.....+. +.+..|.+-+....+ ..+...+-+|+.|+..+++- .+|.|-..+.+...
T Consensus 923 vd~~~~~v~--~IW~lL~k~cE~~ee--gtR~vvAECLGkL~l~epes-------LlpkL~~~~~S~a~----------- 980 (1233)
T KOG1824|consen 923 VDGLKPYVE--KIWALLFKHCECAEE--GTRNVVAECLGKLVLIEPES-------LLPKLKLLLRSEAS----------- 980 (1233)
T ss_pred cchhhhhHH--HHHHHHHHhcccchh--hhHHHHHHHhhhHHhCChHH-------HHHHHHHHhcCCCc-----------
Confidence 111111111 344555555555554 67888899999999877661 23333333332110
Q ss_pred hhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhccccc
Q 002999 613 NIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLC 677 (859)
Q Consensus 613 ~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~ 677 (859)
.....+-.-++|+-..+++....+.. ..|.-+..+++++ +.+|++.|-.++...+.+.+.+.
T Consensus 981 -~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslI 1042 (1233)
T KOG1824|consen 981 -NTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLI 1042 (1233)
T ss_pred -chhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHH
Confidence 01111222344555455655554433 3467788999996 99999999999999888876654
No 68
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.5e-05 Score=80.69 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcC
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGN 293 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~ 293 (859)
+-++.|+.-|..++.+=+|-..+...|++..++.+|.+.+.++|+.|+++|...+.++...+..+.+.|+++.|+.+|..
T Consensus 98 e~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~ 177 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS 177 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc
Confidence 88999999999999998999999999999999999999999999999999999988765444333468999999999995
Q ss_pred CCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccC--ChHHHHHHHHHHHHhcCCCcc-HHHHHHhhH-HH
Q 002999 294 LELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQG--SDNVQIEMAFLVGKLTLTNSC-KEHIARQCA-KV 368 (859)
Q Consensus 294 ~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~la~~~~~-~~~i~~~gi-~~ 368 (859)
+++..++..|+.+++.|-.+ +.....+...++...|...|+++ +...+..++..|..+...+.. +..+..-+. ..
T Consensus 178 ~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~ 257 (342)
T KOG2160|consen 178 DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRV 257 (342)
T ss_pred CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Confidence 56667789999999999965 56778899999999999999984 556677778888888775544 444444555 44
Q ss_pred HHHHhC--ChhHHHHHHHHHHHhhCC
Q 002999 369 LVELLS--KPAGRAASLKALYNLSGL 392 (859)
Q Consensus 369 Lv~lL~--~~~~~~~a~~aL~~Ls~~ 392 (859)
++.+.. +.++.+.+..++..+...
T Consensus 258 ~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 258 LENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHH
Confidence 455555 777888877776666543
No 69
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.35 E-value=2.1e-07 Score=93.80 Aligned_cols=67 Identities=13% Similarity=0.275 Sum_probs=62.4
Q ss_pred cccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhc
Q 002999 76 NFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRN 148 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 148 (859)
-+.|-||.+.|+-||++|||||||--||..|+.. ++.||.|..+.++.+|..|..|.+.|+.+....
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~------~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY------KPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhcc------CCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999988 799999999999999999999999999887643
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00034 Score=79.65 Aligned_cols=281 Identities=15% Similarity=0.125 Sum_probs=173.3
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhh
Q 002999 202 KLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEK 281 (859)
Q Consensus 202 ~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~ 281 (859)
.=|++++. .++..|+.+|++++..+-.| ...|.+.++|+..++-++..|+-+...+........ +
T Consensus 114 nDL~s~nq----~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~-----e 178 (866)
T KOG1062|consen 114 NDLNSSNQ----YVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV-----E 178 (866)
T ss_pred hhccCCCe----eehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH-----H
Confidence 33455566 78899999999998764333 346778888899999999999888887765533222 2
Q ss_pred ChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhcc---------------CChHHHHHHH
Q 002999 282 GALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQ---------------GSDNVQIEMA 345 (859)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~---------------~~~~~~~~aa 345 (859)
-.++.-.++|. +.++.+....+..+..+|.. +++...+.+ .++-||..|+. .+|=+|....
T Consensus 179 ~f~~~~~~lL~-ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 179 HFVIAFRKLLC-EKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred HhhHHHHHHHh-hcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 24566777777 67778877777788888753 444444444 56666666632 1123333333
Q ss_pred HHHHHhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCCcchHHHHH---cCcHHHHHHHHhccCCCCHHH
Q 002999 346 FLVGKLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILVD---SALLPALTDILFKSHDASPEL 422 (859)
Q Consensus 346 ~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~~~~i~~---~G~i~~Lv~lL~~~~~~~~~~ 422 (859)
+.|+-|..+ +++..+.-...|..++...+..+-+.. ...|..+..+. ++..+
T Consensus 256 rlLriLGq~--------------------d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~-----~~~~L 310 (866)
T KOG1062|consen 256 RLLRILGQN--------------------DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR-----SNSGL 310 (866)
T ss_pred HHHHHhcCC--------------------CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc-----CCchH
Confidence 333333222 556666666777777776532211111 12333333333 34578
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccC-cc-cccchH----HHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 002999 423 KELAAATIANVVSNPGCWELASADKLGH-SM-QSESIV----SSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATH 496 (859)
Q Consensus 423 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~-~l-~~~~~i----~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~ 496 (859)
++.|+.+|..+..+..+.-++.--..-. .+ .+..++ ..++++|++.++.++..++..++.|..... ++.
T Consensus 311 rvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N----v~~- 385 (866)
T KOG1062|consen 311 RVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN----VRV- 385 (866)
T ss_pred HHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc----HHH-
Confidence 8888888888777766544321000000 00 011222 257788899999999999999999977643 222
Q ss_pred HhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHH
Q 002999 497 IKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQD 535 (859)
Q Consensus 497 i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~ 535 (859)
-+..|+.+|.+.+++.+...+.-+..+++...++
T Consensus 386 -----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 386 -----MVKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred -----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 2578889999999999988777777777433333
No 71
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.32 E-value=0.00014 Score=80.37 Aligned_cols=239 Identities=15% Similarity=0.072 Sum_probs=169.1
Q ss_pred CcHHHHHHHHhc-CCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhh
Q 002999 195 GVVLLIVKLLKS-SSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY 273 (859)
Q Consensus 195 g~i~~Lv~lL~~-~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 273 (859)
.+++.++..|.. .+. +++..++.+|... ++ ..++..|+..|.+.+..++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~----ev~~~aa~al~~~--~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i------ 113 (410)
T TIGR02270 54 AATELLVSALAEADEP----GRVACAALALLAQ--ED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL------ 113 (410)
T ss_pred hHHHHHHHHHhhCCCh----hHHHHHHHHHhcc--CC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC------
Confidence 457888888854 444 6666555555322 21 12389999999999988999999999866
Q ss_pred hhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 002999 274 CKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTL 353 (859)
Q Consensus 274 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~ 353 (859)
...++.+.|+.+|. +.++.++..++.++..- .....++|+.+|++.++.++..++.+|+.+..
T Consensus 114 -----~~~~a~~~L~~~L~-~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 114 -----GGRQAEPWLEPLLA-ASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred -----CchHHHHHHHHHhc-CCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 24668899999998 88999888887776551 12346789999999999999999999997653
Q ss_pred CCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002999 354 TNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIA 431 (859)
Q Consensus 354 ~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~ 431 (859)
....+.|...+. ++.++..|+.+|..+.. ..+++.++.+... ........+..++.
T Consensus 177 ---------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~---~g~~~~~~l~~~la 234 (410)
T TIGR02270 177 ---------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVL---EGGPHRQRLLVLLA 234 (410)
T ss_pred ---------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhc---cCccHHHHHHHHHH
Confidence 234567777777 99999999999976632 2335566664432 22233333444443
Q ss_pred HhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhc
Q 002999 432 NVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLE 511 (859)
Q Consensus 432 nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 511 (859)
.. ....++..|..+++.. .++..++++|..+-.. ..++.|+..+.
T Consensus 235 l~-------------------~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p--------------~av~~L~~~l~ 279 (410)
T TIGR02270 235 VA-------------------GGPDAQAWLRELLQAA--ATRREALRAVGLVGDV--------------EAAPWCLEAMR 279 (410)
T ss_pred hC-------------------CchhHHHHHHHHhcCh--hhHHHHHHHHHHcCCc--------------chHHHHHHHhc
Confidence 22 1235688888988764 4888899888876433 35788888886
Q ss_pred CCChhHHHHHHHHHHHHh
Q 002999 512 HPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 512 ~~~~~v~~~A~~~L~~Ls 529 (859)
.+. ++..|..++..|+
T Consensus 280 d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 280 EPP--WARLAGEAFSLIT 295 (410)
T ss_pred CcH--HHHHHHHHHHHhh
Confidence 554 8999999999997
No 72
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.31 E-value=0.0046 Score=69.84 Aligned_cols=257 Identities=14% Similarity=0.149 Sum_probs=154.6
Q ss_pred HHHhC--ChhHHHHHHHHHHHhhCCCcch---HHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccc
Q 002999 370 VELLS--KPAGRAASLKALYNLSGLDDNA---TILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELAS 444 (859)
Q Consensus 370 v~lL~--~~~~~~~a~~aL~~Ls~~~~~~---~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 444 (859)
+..|+ ++.++..|+..+..|+.--.++ +.+...|+ .|.+.|. +..+++.--.+.+|..++..-.-...+
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylg---eeypEvLgsILgAikaI~nvigm~km~- 878 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLG---EEYPEVLGSILGAIKAIVNVIGMTKMT- 878 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcC---cccHHHHHHHHHHHHHHHHhccccccC-
Confidence 34555 8889999999988887543333 23333454 3556663 244567666666666665433211111
Q ss_pred cccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHH
Q 002999 445 ADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRL 524 (859)
Q Consensus 445 ~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~ 524 (859)
---.+.+|.|..+|++.+..++++++..+..+|......-..++.++ .---|+.+|.+.+.++|++|...
T Consensus 879 -------pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 879 -------PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred -------CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 11257889999999999999999999999999876432222344443 23468899999999999999999
Q ss_pred HHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhccccc
Q 002999 525 TRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFN 604 (859)
Q Consensus 525 L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~ 604 (859)
+.++++.. ...+.+..|++-|+..+- .-+....-+++-.+.. .|-+..|-.++.+.+..
T Consensus 949 fG~IakaI--------GPqdVLatLlnnLkvqeR--q~RvcTtvaIaIVaE~---------c~pFtVLPalmneYrtP-- 1007 (1172)
T KOG0213|consen 949 FGYIAKAI--------GPQDVLATLLNNLKVQER--QNRVCTTVAIAIVAET---------CGPFTVLPALMNEYRTP-- 1007 (1172)
T ss_pred hhHHHHhc--------CHHHHHHHHHhcchHHHH--Hhchhhhhhhhhhhhh---------cCchhhhHHHHhhccCc--
Confidence 99998433 222444555555543322 1112211122211110 12222222345554332
Q ss_pred CCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 605 TRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 605 ~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
...++-|++.++..+-..........+ +.+.|.|-+.|.+. ++.-|..|+.++.+++.+
T Consensus 1008 ------e~nVQnGVLkalsf~FeyigemskdYi--yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1008 ------EANVQNGVLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred ------hhHHHHhHHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence 234677777777766532111122222 35689999999986 999999999999998754
No 73
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.001 Score=75.62 Aligned_cols=462 Identities=13% Similarity=0.130 Sum_probs=253.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH-HhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHH
Q 002999 243 KSVIHSLIGNSEKEKEYAVKLLL-EFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLA 321 (859)
Q Consensus 243 ~~Lv~lL~~~~~~~~~~A~~~L~-~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~ 321 (859)
.-|..+|.+.....+..|..-+. -++.+.+ . ....|..|+... +.|.++++..---|..-+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-v------S~~Fp~VVKNVa-skn~EVKkLVyvYLlrYAEeqpdLALL- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-V------SLLFPAVVKNVA-SKNIEVKKLVYVYLLRYAEEQPDLALL- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-H------HHHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcCCCceee-
Confidence 46778888877666666665444 4555444 1 335678888888 889999888777766666554443221
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhH-HHHHHHhC--ChhHHHHHHHHHHHhhCCCcc-hH
Q 002999 322 AAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCA-KVLVELLS--KPAGRAASLKALYNLSGLDDN-AT 397 (859)
Q Consensus 322 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi-~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~-~~ 397 (859)
-|..+=+-|.++++.++..|.++|.-+= .-+....+ -++-+... ++-+++.|+.||-.|-+.+.+ ..
T Consensus 109 ---SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 ---SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred ---eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 3556667788888888888877776321 11111111 12222333 788999999999999776644 33
Q ss_pred HHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHH
Q 002999 398 ILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTL 477 (859)
Q Consensus 398 ~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~ 477 (859)
.+ ++.+=.||. +.++.+.-.|+.+...+|-+.- .++ .+-...|.++|..-+.=-|...+
T Consensus 180 qL-----~e~I~~LLa---D~splVvgsAv~AF~evCPerl------------dLI-HknyrklC~ll~dvdeWgQvvlI 238 (968)
T KOG1060|consen 180 QL-----EEVIKKLLA---DRSPLVVGSAVMAFEEVCPERL------------DLI-HKNYRKLCRLLPDVDEWGQVVLI 238 (968)
T ss_pred HH-----HHHHHHHhc---CCCCcchhHHHHHHHHhchhHH------------HHh-hHHHHHHHhhccchhhhhHHHHH
Confidence 33 334444553 3445677777777776654321 122 34456677776554444455566
Q ss_pred HHHHHhccCChhHHHHHHHHhhCCC-------------------------HHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 002999 478 RILCGIASSPQAAESVATHIKSGDG-------------------------IKYIIQFLEHPEVEHRTYAFRLTRILSERI 532 (859)
Q Consensus 478 ~aL~~La~~~~~~~~~~~~i~~~g~-------------------------i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~ 532 (859)
..|..-|+..-..........+.+| ++..-.++.+.++.+...++.+++.++...
T Consensus 239 ~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~ 318 (968)
T KOG1060|consen 239 NMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN 318 (968)
T ss_pred HHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence 6666665541100000000111111 222334778888899999999999997321
Q ss_pred cHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcc
Q 002999 533 GQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPIS 612 (859)
Q Consensus 533 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~ 612 (859)
+ + .+.+++||++|+++. ++|...+..++.++...+.+ +. ..++++---. ++...
T Consensus 319 --~----~--~~i~kaLvrLLrs~~---~vqyvvL~nIa~~s~~~~~l--------F~---P~lKsFfv~s---sDp~~- 372 (968)
T KOG1060|consen 319 --Q----V--TKIAKALVRLLRSNR---EVQYVVLQNIATISIKRPTL--------FE---PHLKSFFVRS---SDPTQ- 372 (968)
T ss_pred --H----H--HHHHHHHHHHHhcCC---cchhhhHHHHHHHHhcchhh--------hh---hhhhceEeec---CCHHH-
Confidence 1 1 256899999999887 46666666666665533332 11 1222210000 01110
Q ss_pred hhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCcccccc
Q 002999 613 NIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCAS 692 (859)
Q Consensus 613 ~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 692 (859)
+...=+.+|.+++.. ..... +++-|-...+++ +..+-..|..||+..+.....
T Consensus 373 -vk~lKleiLs~La~e---sni~~-----ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~s----------------- 425 (968)
T KOG1060|consen 373 -VKILKLEILSNLANE---SNISE-----ILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGS----------------- 425 (968)
T ss_pred -HHHHHHHHHHHHhhh---ccHHH-----HHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCc-----------------
Confidence 111123344444421 11111 133444555554 545555555555554433110
Q ss_pred ccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcC
Q 002999 693 LVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREG 772 (859)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g 772 (859)
+...++..||++|.+.|..|+..|+..|-.|++. + +....+
T Consensus 426 ------------------------------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~-~--p~~h~~------ 466 (968)
T KOG1060|consen 426 ------------------------------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK-D--PAEHLE------ 466 (968)
T ss_pred ------------------------------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh-C--hHHHHH------
Confidence 1223588999999999999999999999999976 2 311111
Q ss_pred ChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHH
Q 002999 773 ALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALT 840 (859)
Q Consensus 773 ~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~ 840 (859)
-|..|.+++.+..=+..|.--+|++..++... -.+. ..+.+.++.-|.+.++.+|-.....-+
T Consensus 467 ii~~La~lldti~vp~ARA~IiWLige~~e~v---pri~--PDVLR~laksFs~E~~evKlQILnL~a 529 (968)
T KOG1060|consen 467 ILFQLARLLDTILVPAARAGIIWLIGEYCEIV---PRIA--PDVLRKLAKSFSDEGDEVKLQILNLSA 529 (968)
T ss_pred HHHHHHHHhhhhhhhhhhceeeeeehhhhhhc---chhc--hHHHHHHHHhhccccchhhHHHHHhhh
Confidence 23446666653222334444478777766421 1111 112245555566666666655544433
No 74
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.27 E-value=3.9e-05 Score=81.46 Aligned_cols=222 Identities=13% Similarity=0.109 Sum_probs=153.1
Q ss_pred hHHHHhcCChHHHHHHhccCChHH--HHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhC
Q 002999 317 VQPLAAAGRFEPLINRLCQGSDNV--QIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRAASLKALYNLSG 391 (859)
Q Consensus 317 ~~~i~~~G~i~~Lv~lL~~~~~~~--~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~ 391 (859)
+..+...|+++.|+.++..++.+. +.++++.|-.+. ..+|+..+..-|...++.+-+ .++.+...++.|.++-.
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 456777899999999998877655 888888887654 345677776666544444444 77889999999999998
Q ss_pred CC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCCh
Q 002999 392 LD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSP 470 (859)
Q Consensus 392 ~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~ 470 (859)
+. +.+..++++|++..++-..+. .++.+..+|+-+|.|++.+...-.. ..+++..+-+=|+.|-.+.+.
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rR---t~P~lLRH~ALAL~N~~L~~~~a~q-------rrmveKr~~EWLF~LA~skDe 321 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRR---TDPALLRHCALALGNCALHGGQAVQ-------RRMVEKRAAEWLFPLAFSKDE 321 (832)
T ss_pred hhHHHHHHHHhhcccchheeeccc---CCHHHHHHHHHHhhhhhhhchhHHH-------HHHHHhhhhhhhhhhhcchHH
Confidence 87 678999999999998877765 4578999999999999887642111 135666666667777667777
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHH
Q 002999 471 QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFK 550 (859)
Q Consensus 471 ~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv 550 (859)
-++-+++.+.+-|+.+.+ +...++..|-+...-.++.+-++.- +++...+.. .. ...+.++.|+
T Consensus 322 l~R~~AClAV~vlat~KE----~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~a-QG-~~~d~LqRLv 385 (832)
T KOG3678|consen 322 LLRLHACLAVAVLATNKE----VEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYA-QG-RGPDDLQRLV 385 (832)
T ss_pred HHHHHHHHHHhhhhhhhh----hhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhh-cc-CChHHHHHhh
Confidence 788899999999988753 3445666777766666666666521 111111111 00 1114678888
Q ss_pred HhhccCCCchhHHHHHH
Q 002999 551 DKILDNQSANCERSDAA 567 (859)
Q Consensus 551 ~lL~~~~~~~~~~~~A~ 567 (859)
-+|.+..- +.+..++
T Consensus 386 PlLdS~R~--EAq~i~A 400 (832)
T KOG3678|consen 386 PLLDSNRL--EAQCIGA 400 (832)
T ss_pred hhhhcchh--hhhhhHH
Confidence 89886554 4444333
No 75
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.26 E-value=0.00019 Score=79.38 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=82.8
Q ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHH
Q 002999 403 ALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCG 482 (859)
Q Consensus 403 G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~ 482 (859)
.+++.|+..|.. +.+..+...++.++. .. ....++..|+..|.+.++.++..++.+|..
T Consensus 54 ~a~~~L~~aL~~--d~~~ev~~~aa~al~---~~----------------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~ 112 (410)
T TIGR02270 54 AATELLVSALAE--ADEPGRVACAALALL---AQ----------------EDALDLRSVLAVLQAGPEGLCAGIQAALGW 112 (410)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh---cc----------------CChHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 356777778743 233455544444432 11 112247889999988888898888888875
Q ss_pred hccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhH
Q 002999 483 IASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCE 562 (859)
Q Consensus 483 La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~ 562 (859)
+-.. +..+.|+.++++.++.+|..++.++.... ....+.|+.+|++.+. .+
T Consensus 113 i~~~--------------~a~~~L~~~L~~~~p~vR~aal~al~~r~-------------~~~~~~L~~~L~d~d~--~V 163 (410)
T TIGR02270 113 LGGR--------------QAEPWLEPLLAASEPPGRAIGLAALGAHR-------------HDPGPALEAALTHEDA--LV 163 (410)
T ss_pred CCch--------------HHHHHHHHHhcCCChHHHHHHHHHHHhhc-------------cChHHHHHHHhcCCCH--HH
Confidence 5221 24578888899889998887776665421 1345678888887776 88
Q ss_pred HHHHHHHHHHhcC
Q 002999 563 RSDAACILANIQL 575 (859)
Q Consensus 563 ~~~A~~~L~~L~~ 575 (859)
+..|+.+|+.+..
T Consensus 164 ra~A~raLG~l~~ 176 (410)
T TIGR02270 164 RAAALRALGELPR 176 (410)
T ss_pred HHHHHHHHHhhcc
Confidence 8889888888765
No 76
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.00031 Score=81.21 Aligned_cols=341 Identities=16% Similarity=0.139 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHhccC-hhhhhHhhhh---hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHH
Q 002999 256 EKEYAVKLLLEFCID-EAYCKSVASE---KGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLIN 331 (859)
Q Consensus 256 ~~~~A~~~L~~Ls~~-~~~~~~i~~~---~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~ 331 (859)
-...++.+|.|+... ++....++.+ -|..+.++.+|...+++.++..|+.++.-+..+.+....|++.|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 456678888887654 4444444332 245667777777567888999999999888888888888888888888888
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHH
Q 002999 332 RLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILVDSALLPALTDI 411 (859)
Q Consensus 332 lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~l 411 (859)
+|.+ -|..++.++.+|+.|++.++......+.|++..+..+
T Consensus 1821 lLHS---------------------------------------~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~ 1861 (2235)
T KOG1789|consen 1821 LLHS---------------------------------------QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSI 1861 (2235)
T ss_pred HHhc---------------------------------------ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHH
Confidence 8865 3567888999999999999888888899999998888
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCCCccccc--ccc----cccCcccccchHHHHHHhhcC--CCh------HHHHHHH
Q 002999 412 LFKSHDASPELKELAAATIANVVSNPGCWELA--SAD----KLGHSMQSESIVSSLLGLLSG--VSP------QCQVSTL 477 (859)
Q Consensus 412 L~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~--~~~----~~~~~l~~~~~i~~Ll~LL~~--~~~------~~~~~a~ 477 (859)
+-.. .....+.+++..|+.|....-.-.+. ..- ..-....+.+- +..++.+.. .+| ..+.+..
T Consensus 1862 ~c~~--~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS 1938 (2235)
T KOG1789|consen 1862 LCLT--NSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVS 1938 (2235)
T ss_pred Hhcc--CcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHH
Confidence 8553 44688899999999997765322211 000 00000111111 333444422 122 2333333
Q ss_pred HHHHHhccC--------Chh----------H-----------HHHHHHHhh------------CCCHHHHHHhhcCCChh
Q 002999 478 RILCGIASS--------PQA----------A-----------ESVATHIKS------------GDGIKYIIQFLEHPEVE 516 (859)
Q Consensus 478 ~aL~~La~~--------~~~----------~-----------~~~~~~i~~------------~g~i~~Lv~lL~~~~~~ 516 (859)
..+..|..+ +.. . .-++..+.+ .+.+..+..+|..++++
T Consensus 1939 ~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~pe 2018 (2235)
T KOG1789|consen 1939 GIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPE 2018 (2235)
T ss_pred HHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcc
Confidence 334333221 000 0 001111111 13455566666655542
Q ss_pred --HHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHH
Q 002999 517 --HRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVI 594 (859)
Q Consensus 517 --v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~ 594 (859)
.-..-..++..|- ...+..++.+..-|.+|.++.-+...++ ..-..|..+|-.|+.+....+++.....+..++.
T Consensus 2019 qh~l~lLt~A~V~L~-r~hP~LADqip~LGylPK~~~Am~~~n~--s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~ 2095 (2235)
T KOG1789|consen 2019 QHELDLLTKAFVELV-RHHPNLADQLPSLGYLPKFCTAMCLQNT--SAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMK 2095 (2235)
T ss_pred cchhHHHHHHHHHHH-HhCcchhhhCCCccchHHHHHHHHhcCC--cCcHHHHHHHHHHhhccHHHHHHhccccchhhHH
Confidence 2222233444444 3445678888888999999998877665 4557789999999987666688877766676666
Q ss_pred HHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCC
Q 002999 595 TLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFP 653 (859)
Q Consensus 595 lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~ 653 (859)
.+...- . ...-++.+|-++......+........|.+|.|.+||...
T Consensus 2096 ~mkK~~-----------~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2096 SMKKQP-----------S-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhcc-----------h-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 665411 1 1233455555555444455666677899999999999863
No 77
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.25 E-value=0.0019 Score=74.77 Aligned_cols=360 Identities=14% Similarity=0.101 Sum_probs=194.7
Q ss_pred HHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHh-----hCchHH
Q 002999 172 KALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLE-----EGVTKS 244 (859)
Q Consensus 172 ~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~-----~g~i~~ 244 (859)
.+|..|...-..++...-.=...-..|+++.....+-. .+-..|+.+...++.- +-..-...+ ...+..
T Consensus 497 ~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fy----KisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~ 572 (1233)
T KOG1824|consen 497 DALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFY----KISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDC 572 (1233)
T ss_pred HHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchH----hhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHH
Confidence 47777776554433222111111233444444444444 5666666666665432 000000000 011233
Q ss_pred HHHHhcC--CCHHHHHHHHHHHHHhccC--hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHH
Q 002999 245 VIHSLIG--NSEKEKEYAVKLLLEFCID--EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPL 320 (859)
Q Consensus 245 Lv~lL~~--~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i 320 (859)
..+.|.. .|.++++.|..++..+... +..+..+ +.+++.|+.-|. ++-.+..|..++..++..+-.....
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL---~~~L~il~eRl~---nEiTRl~AvkAlt~Ia~S~l~i~l~ 646 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL---PRTLPILLERLG---NEITRLTAVKALTLIAMSPLDIDLS 646 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHh---chhHHHHHHHHHHHHHhccceeehh
Confidence 3444443 4578999998887765432 2222211 346666666665 5567788899998888664332211
Q ss_pred H-hcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC--ccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcc
Q 002999 321 A-AAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN--SCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDN 395 (859)
Q Consensus 321 ~-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~--~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~ 395 (859)
. =..+++.|...++......+.....++-.|..+- .......+.....+-.++. +..+.+.|...|..+......
T Consensus 647 ~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps 726 (1233)
T KOG1824|consen 647 PVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPS 726 (1233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccH
Confidence 1 1236778888887777777776666666554322 1122223333344444555 666778888889988888776
Q ss_pred hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh----hcCCCcccccccccccCcccccchHHHHHHhhcCCChH
Q 002999 396 ATILVDSALLPALTDILFKSHDASPELKELAAATIANV----VSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQ 471 (859)
Q Consensus 396 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL----~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~ 471 (859)
...-...-+++.++.++++ +-++-.|+.++.++ +.+... +-+ +..|+.++..+-++
T Consensus 727 ~l~~~~~~iL~~ii~ll~S-----pllqg~al~~~l~~f~alV~t~~~--------------~l~-y~~l~s~lt~PV~~ 786 (1233)
T KOG1824|consen 727 SLLKISNPILDEIIRLLRS-----PLLQGGALSALLLFFQALVITKEP--------------DLD-YISLLSLLTAPVYE 786 (1233)
T ss_pred HHHHHhhhhHHHHHHHhhC-----ccccchHHHHHHHHHHHHHhcCCC--------------Ccc-HHHHHHHHcCCccc
Confidence 6666667789999999976 23344444444433 222111 112 55677776554221
Q ss_pred -----H-------HHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC--hhHHHHHHHHHHHHhhhccHHHH
Q 002999 472 -----C-------QVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE--VEHRTYAFRLTRILSERIGQDLA 537 (859)
Q Consensus 472 -----~-------~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~~L~~Ls~~~~~~~~ 537 (859)
+ ...|+.+|+..|... +. . ....|+.-++++. ..++.-|.-.|+.+-++.+.
T Consensus 787 ~~~~~l~kqa~~siA~cvA~Lt~~~~~~-s~-s---------~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--- 852 (1233)
T KOG1824|consen 787 QVTDGLHKQAYYSIAKCVAALTCACPQK-SK-S---------LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--- 852 (1233)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcccc-ch-h---------HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC---
Confidence 1 122344444444421 11 1 1233444344333 35666666666666422211
Q ss_pred HhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHH
Q 002999 538 YALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEE 579 (859)
Q Consensus 538 ~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~ 579 (859)
....+.-..++.-+.+++. +++.+|+.+|++++.++-.
T Consensus 853 --s~~~e~~~~iieaf~sp~e--dvksAAs~ALGsl~vgnl~ 890 (1233)
T KOG1824|consen 853 --SPQNELKDTIIEAFNSPSE--DVKSAASYALGSLAVGNLP 890 (1233)
T ss_pred --CcchhhHHHHHHHcCCChH--HHHHHHHHHhhhhhcCchH
Confidence 1122445577888888887 9999999999999987644
No 78
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.23 E-value=6.2e-05 Score=79.93 Aligned_cols=268 Identities=15% Similarity=0.149 Sum_probs=177.8
Q ss_pred HHHHHhhCchHHHHHHhcCCCHHH--HHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 002999 233 KKIMLEEGVTKSVIHSLIGNSEKE--KEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKM 310 (859)
Q Consensus 233 r~~i~~~g~i~~Lv~lL~~~~~~~--~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL 310 (859)
...|...|++..|++++.+++.+. +.+|+.+|-.+... ++++.++. -| +..+..+.+..+.++.+...+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~-~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVAR-IG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhh-cc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 346677899999999999987655 88888888876543 45566653 22 344444444356778889999999999
Q ss_pred cCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC--ccHHHHHHhh-HHHHHHHhC--ChhHHHHHHH
Q 002999 311 ERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN--SCKEHIARQC-AKVLVELLS--KPAGRAASLK 384 (859)
Q Consensus 311 ~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~--~~~~~i~~~g-i~~Lv~lL~--~~~~~~~a~~ 384 (859)
-.+ ++.+..++++|+++.++-..+..++.+...+|-+|+|++... ..+..|.+.- .+-|.-+-. +.-.+..|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 975 566789999999999999999889999999999999998754 4455555443 344444443 7778888999
Q ss_pred HHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHh
Q 002999 385 ALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGL 464 (859)
Q Consensus 385 aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~L 464 (859)
+..-|+...+--..+...|.+...-.++.++ ++.. ++.+..... .--..+-++.|+.+
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~~-DP~~------------FARD~hd~a---------QG~~~d~LqRLvPl 387 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVASL-DPGR------------FARDAHDYA---------QGRGPDDLQRLVPL 387 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhcc-Ccch------------hhhhhhhhh---------ccCChHHHHHhhhh
Confidence 9999998877666666777654433344331 2211 111111111 11124567889999
Q ss_pred hcCCChHHHHHHHHHHHHhccC----ChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 002999 465 LSGVSPQCQVSTLRILCGIASS----PQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSE 530 (859)
Q Consensus 465 L~~~~~~~~~~a~~aL~~La~~----~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~ 530 (859)
|.+..-+.+ ++.+++-.+.. ..+. .+.+.+-|+|+.|-++..+++...-.-|-++|..+-+
T Consensus 388 LdS~R~EAq--~i~AF~l~~EAaIKs~Q~K---~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 388 LDSNRLEAQ--CIGAFYLCAEAAIKSLQGK---TKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhcchhhhh--hhHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 885543444 44443332221 1111 1334566899999999887776655667778877753
No 79
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.22 E-value=8.1e-07 Score=66.96 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=41.1
Q ss_pred CcccCcccccccCCCeecCCCch-hcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQA-YERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t-~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+++.|+|+++-+.++++.||||. |+..++.+|+.. ...||++|++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR------KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT------TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc------CCCCCcCChhhc
Confidence 35789999999999999999999 999999999986 689999998874
No 80
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0021 Score=72.39 Aligned_cols=325 Identities=13% Similarity=0.069 Sum_probs=198.9
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-c-chHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC-hhhh
Q 002999 198 LLIVKLLKSSSKSVGTILRSKALMALLSMAKD-E-ESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID-EAYC 274 (859)
Q Consensus 198 ~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~-~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~ 274 (859)
+-++.+|++..+ .+|..|+..|..+..- + ..| .++|.|+.-|..+++.++..|+.++++|+.. +.+.
T Consensus 147 ~Dv~tLL~sskp----YvRKkAIl~lykvFLkYPeAlr------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 147 DDVFTLLNSSKP----YVRKKAILLLYKVFLKYPEALR------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHhcCch----HHHHHHHHHHHHHHHhhhHhHh------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 457889999888 9999999999887654 2 222 3589999999999999999999999999976 4444
Q ss_pred hHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCC-hHHHHHHHHHHH--Hh
Q 002999 275 KSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGS-DNVQIEMAFLVG--KL 351 (859)
Q Consensus 275 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~--~l 351 (859)
-. .-|.+.++|-.+.|.=+.........+|+..+.-- ....++||.+++.+.. ..+..++..++. ++
T Consensus 217 L~------LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 217 LQ------LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL----GKKLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred cc------ccHHHHHHHhccCCCeehHHHHHHHhhccccCchh----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 33 34788888875666666677777888887653321 1236789999996543 344555555433 23
Q ss_pred cCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcc-hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHH
Q 002999 352 TLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDN-ATILVDSALLPALTDILFKSHDASPELKELAAA 428 (859)
Q Consensus 352 a~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~ 428 (859)
..+..+...-.+-.+..|-.++. ++.++-.++-|++.+...+.- ..+- -+.++++|. +.+..++-.|+.
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~---DkD~SIRlrALd 358 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLD---DKDESIRLRALD 358 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhc---cCCchhHHHHHH
Confidence 33333444444555666666666 889999999999999876532 1111 245678884 466789999999
Q ss_pred HHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHH
Q 002999 429 TIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVS-PQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYII 507 (859)
Q Consensus 429 ~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~-~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv 507 (859)
.|..++....- ..++..|+..+...+ ...+...+.-+..+|+.+.- ..+ .-+. --+..|+
T Consensus 359 Ll~gmVskkNl---------------~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY-~~I-tdFE--WYlsVlv 419 (877)
T KOG1059|consen 359 LLYGMVSKKNL---------------MEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY-QYI-TDFE--WYLSVLV 419 (877)
T ss_pred HHHHHhhhhhH---------------HHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh-hhh-hhHH--HHHHHHH
Confidence 99977654311 124666666554433 36777777777777765321 111 1111 1345566
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhc---------cCCCchhHHHHHHHHHHHhcC
Q 002999 508 QFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKIL---------DNQSANCERSDAACILANIQL 575 (859)
Q Consensus 508 ~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~---------~~~~~~~~~~~A~~~L~~L~~ 575 (859)
.+.+-...+.-.....-+..++=.. ..++. -.+.....++. ....+.++..+|+|+++..+.
T Consensus 420 eLa~l~~~~~G~~I~eQi~Dv~iRV-~~iR~-----fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse 490 (877)
T KOG1059|consen 420 ELARLEGTRHGSLIAEQIIDVAIRV-PSIRP-----FSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSE 490 (877)
T ss_pred HHHhccccchhhHHHHHHHHHheec-hhhhH-----hHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHH
Confidence 6655544333333333333443000 00111 11122222222 122245778899999998765
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=98.21 E-value=0.0013 Score=75.90 Aligned_cols=242 Identities=17% Similarity=0.109 Sum_probs=158.8
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCc----ChHHHHhcCChHHHHHHhcc-------CChHHHHHHHHHHHHh
Q 002999 283 ALVLLSSMTGNLELPALSNLADEVFKKMERIEE----IVQPLAAAGRFEPLINRLCQ-------GSDNVQIEMAFLVGKL 351 (859)
Q Consensus 283 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~----~~~~i~~~G~i~~Lv~lL~~-------~~~~~~~~aa~~L~~l 351 (859)
.+...+++|+ +.+.+-+-.++..+.+++..++ .++.+.++=+.+.|-++|++ +....+..+...|+.+
T Consensus 6 ~l~~c~~lL~-~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLK-SADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhc-cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5677888888 5665666777788888886543 24467888777888888876 3356677778889988
Q ss_pred cCCCccHHHH-HHhhHHHHHHHhC--Ch-hHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHH
Q 002999 352 TLTNSCKEHI-ARQCAKVLVELLS--KP-AGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAA 427 (859)
Q Consensus 352 a~~~~~~~~i-~~~gi~~Lv~lL~--~~-~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~ 427 (859)
+..++....- .-+-+|.|++.+. +. .+...|..+|..++.+++.++.+++.|+++.|.+.+.+ .....+.|+
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E~Al 160 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QSFQMEIAL 160 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----CcchHHHHH
Confidence 8866543221 1234799999987 55 88999999999999989999999999999999999965 246789999
Q ss_pred HHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChh--HHHHHHHHhhCCCHHH
Q 002999 428 ATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQA--AESVATHIKSGDGIKY 505 (859)
Q Consensus 428 ~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~--~~~~~~~i~~~g~i~~ 505 (859)
.+|.+++........ . ... -.-..+++.+-..+.......+...+..|..+-..... .......-.-......
T Consensus 161 ~lL~~Lls~~~~~~~-~--~~~--~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSW-A--EDS--QLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHhcchhhh-h--hhH--HHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 999999876542110 0 000 00123455565666555556677777777766443210 0000000000112234
Q ss_pred HHHhhcCCC-hhHHHHHHHHHHHHhhhccH
Q 002999 506 IIQFLEHPE-VEHRTYAFRLTRILSERIGQ 534 (859)
Q Consensus 506 Lv~lL~~~~-~~v~~~A~~~L~~Ls~~~~~ 534 (859)
|..+|++.- +..|..++.+..+|.+..+.
T Consensus 236 l~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 236 LRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 455666654 56777888888888754443
No 82
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.21 E-value=0.00083 Score=73.58 Aligned_cols=255 Identities=20% Similarity=0.180 Sum_probs=162.1
Q ss_pred HHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCC--CH
Q 002999 177 VFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGN--SE 254 (859)
Q Consensus 177 L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~ 254 (859)
|-.+.+.++.-|..+.-.-..+.+..++-+++. ++|..+.++++.+..+++.-+.+.+-+.--.++..|..+ +.
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~----~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~ 82 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSK----EVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKND 82 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCCh
Confidence 444445556555554444445555555555556 999999999999999988888888878666666777654 45
Q ss_pred HHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhc
Q 002999 255 KEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLC 334 (859)
Q Consensus 255 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~ 334 (859)
..|++|...++.+..-+...+.+ ..|.+..+|.+.. ..+...+..|.++|+.++-.+ -..++++||+..|++.+.
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~--~~~vvralvaiae-~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAE-HEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALI 157 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHH
Confidence 67899999999987665444444 3678999999999 677789999999999998543 356789999999999998
Q ss_pred cCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhc
Q 002999 335 QGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFK 414 (859)
Q Consensus 335 ~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~ 414 (859)
+++.+.....+.++- .+-..+..|+.+...--++.++.-...
T Consensus 158 d~~~~~~~~l~~~lL--------------------------------------~lLd~p~tR~yl~~~~dL~~l~apftd 199 (371)
T PF14664_consen 158 DGSFSISESLLDTLL--------------------------------------YLLDSPRTRKYLRPGFDLESLLAPFTD 199 (371)
T ss_pred hccHhHHHHHHHHHH--------------------------------------HHhCCcchhhhhcCCccHHHHHHhhhh
Confidence 766544333333333 333333333332221122222222211
Q ss_pred c----CCCCH--HHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 002999 415 S----HDASP--ELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIAS 485 (859)
Q Consensus 415 ~----~~~~~--~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~ 485 (859)
. ...+. .....+..++..+-.+=.+.-.+ ..-...++..|+..|..+.++++...+..|+.+-.
T Consensus 200 ~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l-------~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 200 FHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL-------SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred hhccccccchHHHHHHHHHHHHHHHHhcCCceeee-------ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 1 01111 12333444444333332222211 11223578999999999999999999999988754
No 83
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00045 Score=70.41 Aligned_cols=283 Identities=17% Similarity=0.164 Sum_probs=177.7
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHH-hhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHh
Q 002999 199 LIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIML-EEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSV 277 (859)
Q Consensus 199 ~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 277 (859)
.++++|.+.++ .++..|+..+..|... ..+.... +.-.++.+..+++...+ .+.|+.+|.|++.++..++.+
T Consensus 7 elv~ll~~~sP----~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 7 ELVELLHSLSP----PVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHhccCCh----HHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 57899999988 9999999999988776 3333322 23467888888887655 678999999999999998888
Q ss_pred hhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHh--c----CChHHHHHHh-ccCCh--HHHHHHHHHH
Q 002999 278 ASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAA--A----GRFEPLINRL-CQGSD--NVQIEMAFLV 348 (859)
Q Consensus 278 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~--~----G~i~~Lv~lL-~~~~~--~~~~~aa~~L 348 (859)
... .+..++.++- ..........+.+|.||++.+.....+.. . .++..++... +.+-. .--...|..+
T Consensus 80 l~~--~~k~l~~~~~-~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 80 LQD--LLKVLMDMLT-DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHH--HHHHHHHHhc-CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 754 7888888887 44445677889999999988776544321 1 2344444443 33222 2233456778
Q ss_pred HHhcCCCccHHHHHHhhH---HHHHHHhC-ChhHHH-HHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHH
Q 002999 349 GKLTLTNSCKEHIARQCA---KVLVELLS-KPAGRA-ASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELK 423 (859)
Q Consensus 349 ~~la~~~~~~~~i~~~gi---~~Lv~lL~-~~~~~~-~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~ 423 (859)
.||+.....|..+.+.-. ..|+.+=. +..+++ ..++.|.|.|....+...+.+ -.+..|-.+|..
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlP--------- 226 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLP--------- 226 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhh---------
Confidence 889888888877753322 22222222 344443 478899999988888888777 444444444432
Q ss_pred HHHHHHHHHhhcCCCcccccccccccCcccccc--hHHHHHHhhc-----CCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 002999 424 ELAAATIANVVSNPGCWELASADKLGHSMQSES--IVSSLLGLLS-----GVSPQCQVSTLRILCGIASSPQAAESVATH 496 (859)
Q Consensus 424 ~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~--~i~~Ll~LL~-----~~~~~~~~~a~~aL~~La~~~~~~~~~~~~ 496 (859)
|++.. + +.++. .+|.=+++|. .++|.++...+.+|.-||....+ |+.
T Consensus 227 ---------lagpe-e------------~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G----Re~ 280 (353)
T KOG2973|consen 227 ---------LAGPE-E------------LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG----REV 280 (353)
T ss_pred ---------cCCcc-c------------cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh----HHH
Confidence 11111 1 11111 1111124453 46789999999999999987655 455
Q ss_pred HhhCCCHHHHHHhhcC--CChhHHHHHHHHHHHH
Q 002999 497 IKSGDGIKYIIQFLEH--PEVEHRTYAFRLTRIL 528 (859)
Q Consensus 497 i~~~g~i~~Lv~lL~~--~~~~v~~~A~~~L~~L 528 (859)
++..|+ .++++.+.. ++++++..+-...-.+
T Consensus 281 lR~kgv-YpilRElhk~e~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 281 LRSKGV-YPILRELHKWEEDEDIREACEQVVQML 313 (353)
T ss_pred HHhcCc-hHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 555555 555555543 3445655444333333
No 84
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0017 Score=73.65 Aligned_cols=359 Identities=14% Similarity=0.129 Sum_probs=206.2
Q ss_pred ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhc--cCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCc
Q 002999 375 KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFK--SHDASPELKELAAATIANVVSNPGCWELASADKLGHS 451 (859)
Q Consensus 375 ~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~--~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 451 (859)
.|.....|..++..++.-. ++ +.-|-|+..|.+ +...+..+++.++.+|.-+|.+-....- .
T Consensus 103 ep~~~s~Aaq~va~IA~~ElP~-------n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl--------~ 167 (859)
T KOG1241|consen 103 EPRRPSSAAQCVAAIACIELPQ-------NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVL--------E 167 (859)
T ss_pred CCCccchHHHHHHHHHHhhCch-------hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHH--------H
Confidence 3445556777777776543 21 334555555544 2223346899999999999887543210 0
Q ss_pred ccccchHHHHHHhhcC--CChHHHHHHHHHHHHhccC---ChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHH
Q 002999 452 MQSESIVSSLLGLLSG--VSPQCQVSTLRILCGIASS---PQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTR 526 (859)
Q Consensus 452 l~~~~~i~~Ll~LL~~--~~~~~~~~a~~aL~~La~~---~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~ 526 (859)
-....++..+++-.+. ++..++-.++.+|.+--.- +.+.+ ..+.=.++..+..-++++.+++..|..+|.
T Consensus 168 ~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-----~ern~iMqvvcEatq~~d~~i~~aa~~Clv 242 (859)
T KOG1241|consen 168 QQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-----MERNYIMQVVCEATQSPDEEIQVAAFQCLV 242 (859)
T ss_pred HHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-----hhhceeeeeeeecccCCcHHHHHHHHHHHH
Confidence 1122344455544433 3458898999999765321 11111 112224566677778889999999999988
Q ss_pred HHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCC
Q 002999 527 ILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTR 606 (859)
Q Consensus 527 ~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r 606 (859)
.+..-.-+.....+.+ ..+..=+.-.++.++ ++...+.-.=++++. ++++..++.|.... .++
T Consensus 243 kIm~LyY~~m~~yM~~-alfaitl~amks~~d--eValQaiEFWstice--EEiD~~~e~~e~~d------------~~~ 305 (859)
T KOG1241|consen 243 KIMSLYYEFMEPYMEQ-ALFAITLAAMKSDND--EVALQAIEFWSTICE--EEIDLAIEYGEAVD------------QGL 305 (859)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHcCCcH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHhh------------cCC
Confidence 8762111222222222 122333444455554 777777777777764 33333333221110 000
Q ss_pred CCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCC------ChHHHHHHHHHHhhhhhhhcccccccC
Q 002999 607 SSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFP------SKARVKQLAAHGLKNLSEAGRSLCAED 680 (859)
Q Consensus 607 ~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~------~~~~vk~~Aa~aL~~ls~~~~~~~~~~ 680 (859)
+ + .-.+|+. -+-.+++|.|+++|... .+...-..|..+|.-++....+...
T Consensus 306 ~--p----------~~~~fa~---------~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-- 362 (859)
T KOG1241|consen 306 P--P----------SSKYFAR---------QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-- 362 (859)
T ss_pred C--c----------hhhHHHH---------HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch--
Confidence 0 0 0111221 11347899999999762 1235667777777776654332211
Q ss_pred CCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHh-hhccCChhHHHHHHHHHHhhhhccCc
Q 002999 681 TGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVD-LLAEEDTNVEIAAVEALSTLIIDTSK 759 (859)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~~L~~d~~~ 759 (859)
.-|-|.++ -+.++|+.-+++|+-|++-+...
T Consensus 363 ---------------------------------------------~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g--- 394 (859)
T KOG1241|consen 363 ---------------------------------------------PHVLPFIEENIQNPDWRNREAAVMAFGSILEG--- 394 (859)
T ss_pred ---------------------------------------------hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcC---
Confidence 01334444 77899999999999999999954
Q ss_pred chhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhc-cccccccccchhhHHHHHHHhhcCChhhHHHHHHH
Q 002999 760 NFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRV-EGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEA 838 (859)
Q Consensus 760 ~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~ 838 (859)
++.....=.-.++++.++.++. .++--.++.++|.|.+++.. .+...........+..|+.=++ ..|.+-..+.++
T Consensus 395 -p~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWA 471 (859)
T KOG1241|consen 395 -PEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWA 471 (859)
T ss_pred -CchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHH
Confidence 2223333334489999999998 48888999999999999963 2222222222223334444333 358899999999
Q ss_pred HHHHhh
Q 002999 839 LTNLKQ 844 (859)
Q Consensus 839 L~~L~~ 844 (859)
+.+|+.
T Consensus 472 f~~Lae 477 (859)
T KOG1241|consen 472 FISLAE 477 (859)
T ss_pred HHHHHH
Confidence 999983
No 85
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.15 E-value=1.7e-06 Score=62.26 Aligned_cols=40 Identities=25% Similarity=0.762 Sum_probs=35.8
Q ss_pred CcccccccCCCe-ecCCCchhcHHHHHHHHHhcccCCCCCCCCCC
Q 002999 79 CPLTKQVMKEPV-VLESAQAYERKAIEYWFERCLEDGRDPTCPVT 122 (859)
Q Consensus 79 cpi~~~~m~dPv-~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t 122 (859)
|||+.+.+.+|+ +++|||+|++.+|.+|+.. .....||.+
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh----cCCccCCcC
Confidence 899999999999 8899999999999999996 226789975
No 86
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.14 E-value=0.012 Score=66.72 Aligned_cols=487 Identities=13% Similarity=0.123 Sum_probs=252.5
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhcCC----CHHHHHHHHHHHHHhccC--h
Q 002999 199 LIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGN----SEKEKEYAVKLLLEFCID--E 271 (859)
Q Consensus 199 ~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~~~----~~~~~~~A~~~L~~Ls~~--~ 271 (859)
.|++.++++-.|....+|..++.+|..|+.. ...+ .+....+++.|..+ .......-+.++..|+.. +
T Consensus 553 ~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pyg-----ie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~ 627 (1172)
T KOG0213|consen 553 PLVKIIEHGLKDEQQKVRTITALALSALAEAATPYG-----IEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDA 627 (1172)
T ss_pred HHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccH
Confidence 4455554432222227888888888887764 1111 12233344444322 222222223333344332 2
Q ss_pred hhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 002999 272 AYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKL 351 (859)
Q Consensus 272 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~l 351 (859)
+...-.. ..+...+++=.. ++|.+.++-.+.++..+|..+..-........+|.++...-. ..+
T Consensus 628 eya~yyT--revmlil~rEf~-sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~-------------rrm 691 (1172)
T KOG0213|consen 628 EYASYYT--REVMLILIREFG-SPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWG-------------RRM 691 (1172)
T ss_pred HHHHHhH--HHHHHHHHHhhC-CChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhh-------------hhh
Confidence 2222221 223333444344 889999999999999999877766677777777777765521 112
Q ss_pred cCCCcc-HHHH------H-Hhh----HHHHHHHhC--ChhHHHHHHHHHHHhhCCC--cchHHHHHcCcHHHHHHHHhcc
Q 002999 352 TLTNSC-KEHI------A-RQC----AKVLVELLS--KPAGRAASLKALYNLSGLD--DNATILVDSALLPALTDILFKS 415 (859)
Q Consensus 352 a~~~~~-~~~i------~-~~g----i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~G~i~~Lv~lL~~~ 415 (859)
|.+..| |..+ . .-| +..++.=++ ++..++..+.+..++-..- ..-..-.+.-.+..++..++.+
T Consensus 692 A~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeq 771 (1172)
T KOG0213|consen 692 ALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQ 771 (1172)
T ss_pred hccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhc
Confidence 222222 1111 1 112 223333334 5555555555444443221 1111112333445555555543
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 002999 416 HDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVAT 495 (859)
Q Consensus 416 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~ 495 (859)
+. ...+--....++.|--.. +.+ -.-..++..++..|++.++.++.+++..+..++.--.+..+ -+
T Consensus 772 tt-~d~vml~gfg~V~~~lg~---r~k---------pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~e-e~ 837 (1172)
T KOG0213|consen 772 TT-EDSVMLLGFGTVVNALGG---RVK---------PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGE-EK 837 (1172)
T ss_pred cc-chhhhhhhHHHHHHHHhh---ccc---------cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH-HH
Confidence 22 223444445544432211 110 11134577788899999999999999988888642111000 12
Q ss_pred HHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCC--CCchHHHHHhhccCCCchhHHHHHHHHHHHh
Q 002999 496 HIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKP--FDKLVLFKDKILDNQSANCERSDAACILANI 573 (859)
Q Consensus 496 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~--~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L 573 (859)
.+...| -.|...|....+++.-..+.+++.+....+ . ..+.. .+.+|.|.-+|++... .++..+...++.+
T Consensus 838 ~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvig--m-~km~pPi~dllPrltPILknrhe--KVqen~IdLvg~I 910 (1172)
T KOG0213|consen 838 LMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIG--M-TKMTPPIKDLLPRLTPILKNRHE--KVQENCIDLVGTI 910 (1172)
T ss_pred HHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcc--c-cccCCChhhhcccchHhhhhhHH--HHHHHHHHHHHHH
Confidence 232223 246677888889988777777777742111 1 11121 1788999999998886 8888888888877
Q ss_pred cCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCC
Q 002999 574 QLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFP 653 (859)
Q Consensus 574 ~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~ 653 (859)
+...++. .. -.++.+.. --|+++|++.
T Consensus 911 adrgpE~-------------------------------v~----------------aREWMRIc------feLlelLkah 937 (1172)
T KOG0213|consen 911 ADRGPEY-------------------------------VS----------------AREWMRIC------FELLELLKAH 937 (1172)
T ss_pred HhcCccc-------------------------------CC----------------HHHHHHHH------HHHHHHHHHH
Confidence 7633320 00 11122211 1256777775
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHh
Q 002999 654 SKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVD 733 (859)
Q Consensus 654 ~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ 733 (859)
+..+|+.|...++.++.-.. -...+..|.+
T Consensus 938 -kK~iRRaa~nTfG~IakaIG-------------------------------------------------PqdVLatLln 967 (1172)
T KOG0213|consen 938 -KKEIRRAAVNTFGYIAKAIG-------------------------------------------------PQDVLATLLN 967 (1172)
T ss_pred -HHHHHHHHHhhhhHHHHhcC-------------------------------------------------HHHHHHHHHh
Confidence 77788777777776654210 0112333444
Q ss_pred hhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHh-cccccccccc
Q 002999 734 LLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLR-VEGHSHRYSL 812 (859)
Q Consensus 734 lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~-~~~~~~~~~~ 812 (859)
-|+.++-..+.-..-|++..+.. +.+ ...+|.|+.--. .++..+|.--+.++.-+|. ..+....|.-
T Consensus 968 nLkvqeRq~RvcTtvaIaIVaE~--c~p---------FtVLPalmneYr-tPe~nVQnGVLkalsf~FeyigemskdYiy 1035 (1172)
T KOG0213|consen 968 NLKVQERQNRVCTTVAIAIVAET--CGP---------FTVLPALMNEYR-TPEANVQNGVLKALSFMFEYIGEMSKDYIY 1035 (1172)
T ss_pred cchHHHHHhchhhhhhhhhhhhh--cCc---------hhhhHHHHhhcc-CchhHHHHhHHHHHHHHHHHHHHHhhhHHH
Confidence 44444333333233333333311 111 134455555444 3555666656666666663 2333333321
Q ss_pred chhhHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002999 813 NQSLVRALVEAFKHGNANAKRHAQEALTNLKQ 844 (859)
Q Consensus 813 ~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 844 (859)
.+.+-|-++|.+.|..-|+.|+.+++||+-
T Consensus 1036 --av~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1036 --AVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred --HhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 122466789999999999999999999986
No 87
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.3e-06 Score=85.01 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=52.7
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhh
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIG 136 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~ 136 (859)
..|.|-||.+.=+|||++.|||-||=-||-+|+.. ..+...||+|+..++.+.++|=+.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~---~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQT---RPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhh---cCCCeeCCccccccccceEEeeec
Confidence 46999999999999999999999999999999997 244568999999999999998654
No 88
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.11 E-value=1.6e-06 Score=85.64 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=56.9
Q ss_pred ccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhc
Q 002999 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRN 148 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 148 (859)
+.|-||.+-++-|++++||||||.-||.+|+.. .+.||+|+.+....-+.-+..++..++.+..-+
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~------qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT------QPFCPVCREDPCESRLRGSSGSREINESHARNR 91 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC------CCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence 789999999999999999999999999999976 899999999887777777766676666665443
No 89
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.11 E-value=5.8e-07 Score=68.56 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=32.7
Q ss_pred ccCcccccccCCCee-cCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHH
Q 002999 77 FLCPLTKQVMKEPVV-LESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAI 141 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~-~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I 141 (859)
+.|++|.++|++||. -.|.|.||+.||...+. .-||+|+.|-...|+.-|..|.++|
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--------~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--------SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTT--------TB-SSS--B-S-SS----HHHHHHH
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--------CCCCCcCChHHHHHHHhhhhhhccC
Confidence 789999999999995 49999999999987663 3599999998888999999888776
No 90
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.10 E-value=2.1e-06 Score=86.22 Aligned_cols=47 Identities=17% Similarity=0.423 Sum_probs=40.1
Q ss_pred CcccCcccccccCCC--------eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 75 KNFLCPLTKQVMKEP--------VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 75 ~~~~cpi~~~~m~dP--------v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
++..||||++.+.+| ++.+|||+||+.||.+|+.. +.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~------~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE------KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc------CCCCCCCCCEee
Confidence 347899999987764 56689999999999999986 689999998764
No 91
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.047 Score=62.89 Aligned_cols=443 Identities=15% Similarity=0.149 Sum_probs=233.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhc
Q 002999 244 SVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAA 323 (859)
Q Consensus 244 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~ 323 (859)
.|..=|++++.-++-.|+.+|.+++..+-. ....|.+.++|+ ..++-+++.|+.++..+-....+...
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~Ema-------rdlapeVe~Ll~-~~~~~irKKA~Lca~r~irK~P~l~e---- 178 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPEMA-------RDLAPEVERLLQ-HRDPYIRKKAALCAVRFIRKVPDLVE---- 178 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHHHh-------HHhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCchHHH----
Confidence 344445667777788889999998764332 235678888999 78999999998888777644333222
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhcCCCc-cHHHHHHhhHHHHHHHhC-----------------ChhHHHHHHHH
Q 002999 324 GRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNS-CKEHIARQCAKVLVELLS-----------------KPAGRAASLKA 385 (859)
Q Consensus 324 G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~-~~~~i~~~gi~~Lv~lL~-----------------~~~~~~~a~~a 385 (859)
-.+++...+|.+.+.-+.......+..++..+. .-... +.-++.||..|+ +|-++...++.
T Consensus 179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f-r~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF-RDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 235566677777666666666666666655332 21111 123344544444 34566666666
Q ss_pred HHHhhCCCcc-hHHHHHcCcHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHH
Q 002999 386 LYNLSGLDDN-ATILVDSALLPALTDILFKS---HDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSL 461 (859)
Q Consensus 386 L~~Ls~~~~~-~~~i~~~G~i~~Lv~lL~~~---~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~L 461 (859)
|+-|..++.. .+.|- ..|-+..... ......+.-.+..++..+-.+++ ...-++..|
T Consensus 258 LriLGq~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~--------------LrvlainiL 318 (866)
T KOG1062|consen 258 LRILGQNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSG--------------LRVLAINIL 318 (866)
T ss_pred HHHhcCCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccCCch--------------HHHHHHHHH
Confidence 6666665533 33332 2333343321 11223455555555554432221 112345555
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhc
Q 002999 462 LGLLSGVSPQCQVSTLRILCGIASSPQ-AAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYAL 540 (859)
Q Consensus 462 l~LL~~~~~~~~~~a~~aL~~La~~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l 540 (859)
-+.|.+.+..++--++..|........ .....| ..++..|++++..+|+.|.+++..|.. +.+.+.
T Consensus 319 gkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr---------~tIleCL~DpD~SIkrralELs~~lvn---~~Nv~~- 385 (866)
T KOG1062|consen 319 GKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR---------STILECLKDPDVSIKRRALELSYALVN---ESNVRV- 385 (866)
T ss_pred HHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH---------HHHHHHhcCCcHHHHHHHHHHHHHHhc---cccHHH-
Confidence 666666666777777777666655432 222221 456778899999999999999998862 222222
Q ss_pred CCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCC-cHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhh
Q 002999 541 KPFDKLVLFKDKILDNQSANCERSDAACILANIQLS-EEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLL 619 (859)
Q Consensus 541 ~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~ 619 (859)
.+..|+.+|.+.+. +.+...+.-+..++.. .+..+|.++ .+.+.|.... +. ...++..+.+
T Consensus 386 ----mv~eLl~fL~~~d~--~~k~~~as~I~~laEkfaP~k~W~id-----tml~Vl~~aG--~~-----V~~dv~~nll 447 (866)
T KOG1062|consen 386 ----MVKELLEFLESSDE--DFKADIASKIAELAEKFAPDKRWHID-----TMLKVLKTAG--DF-----VNDDVVNNLL 447 (866)
T ss_pred ----HHHHHHHHHHhccH--HHHHHHHHHHHHHHHhcCCcchhHHH-----HHHHHHHhcc--cc-----cchhhHHHHH
Confidence 34568888888865 7777766666665531 222233332 2223333211 10 0011112222
Q ss_pred hhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecC
Q 002999 620 GLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGK 699 (859)
Q Consensus 620 ~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (859)
..+.+-....+......+. ..+.... ++..+ .+....-|+|+|+..+.---+
T Consensus 448 ~LIa~~~~e~~~y~~~rLy--~a~~~~~-~~~is-~e~l~qVa~W~IGEYGdlll~------------------------ 499 (866)
T KOG1062|consen 448 RLIANAFQELHEYAVLRLY--LALSEDT-LLDIS-QEPLLQVASWCIGEYGDLLLD------------------------ 499 (866)
T ss_pred HHHhcCCcchhhHHHHHHH--HHHhhhh-hhhhh-hhhHHHHHHHHhhhhhHHhhc------------------------
Confidence 2221110001111111110 1111111 22222 556677788888755421000
Q ss_pred CCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhcc--CChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHH
Q 002999 700 PPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAE--EDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAV 777 (859)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L 777 (859)
+.|. ..-...-+..++..|.+++.+ .+..++-.|+.||..|... + .+. ..-|+.|
T Consensus 500 -----~~~~--------~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr----~-~s~-----~~ri~~l 556 (866)
T KOG1062|consen 500 -----GANE--------EEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR----F-HSS-----SERIKQL 556 (866)
T ss_pred -----Cccc--------cCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh----c-ccc-----HHHHHHH
Confidence 0000 000001145567788888874 5688999999999999964 1 010 2234444
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHH
Q 002999 778 VDLFTEVRPGLLQERTVWMLERVL 801 (859)
Q Consensus 778 ~~ll~~~~~~~~~~~A~~~l~~~~ 801 (859)
+.-..++-+.++|.+|+. ++.+|
T Consensus 557 I~~~~~s~~~elQQRa~E-~~~l~ 579 (866)
T KOG1062|consen 557 ISSYKSSLDTELQQRAVE-YNALF 579 (866)
T ss_pred HHHhcccccHHHHHHHHH-HHHHH
Confidence 444444578899999863 44444
No 92
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.02 E-value=2.6e-06 Score=62.24 Aligned_cols=40 Identities=28% Similarity=0.707 Sum_probs=33.7
Q ss_pred cCcccccccC---CCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCC
Q 002999 78 LCPLTKQVMK---EPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTG 123 (859)
Q Consensus 78 ~cpi~~~~m~---dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~ 123 (859)
.|||+++-|. .++.++|||+|.+++|.+|+.. +.+||++|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH------SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh------CCcCCccC
Confidence 3999999994 3557799999999999999998 57999985
No 93
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00054 Score=75.00 Aligned_cols=407 Identities=15% Similarity=0.138 Sum_probs=230.8
Q ss_pred hHhHHHHHHHhcccccHHHHHhhhhc---CCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcch
Q 002999 137 LAGAIEEWVNRNVEVQVSTVVETLRK---ENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGT 213 (859)
Q Consensus 137 l~~~I~~w~~~~~~~~i~~l~~~L~~---~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~ 213 (859)
+.+.+..+...+....++.+++.|.. .++....-.-+|-.+...+.. -..+....-.+.+|+++.-+...+.
T Consensus 24 lEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~ia-Lg~~~~~Y~~~iv~Pv~~cf~D~d~---- 98 (675)
T KOG0212|consen 24 LEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIA-LGIKDAGYLEKIVPPVLNCFSDQDS---- 98 (675)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHH-hccccHHHHHHhhHHHHHhccCccc----
Confidence 34445555555544455555554421 111111111245554443221 1112222445788888888887777
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChh--hhhHhhhhhChHHHHHHhh
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEA--YCKSVASEKGALVLLSSMT 291 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL 291 (859)
.+|..|+..|.|++.-...............|.++....+.. ...++..|-.+.++-- ....+ .-++.||.|-.-+
T Consensus 99 ~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~-V~~~aeLLdRLikdIVte~~~tF-sL~~~ipLL~eri 176 (675)
T KOG0212|consen 99 QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQN-VRGGAELLDRLIKDIVTESASTF-SLPEFIPLLRERI 176 (675)
T ss_pred eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccc-cccHHHHHHHHHHHhcccccccc-CHHHHHHHHHHHH
Confidence 999999999999976532222222233344455554444433 4466666666655421 11122 2355666666666
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcChHHHHh--cCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHH-H-HhhHH
Q 002999 292 GNLELPALSNLADEVFKKMERIEEIVQPLAA--AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHI-A-RQCAK 367 (859)
Q Consensus 292 ~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i-~-~~gi~ 367 (859)
. ..++..+.....-|..|-..+.- .|+. ....+-|..+|.+.+++++..+-.+|.++-..-.++... . ...++
T Consensus 177 y-~~n~~tR~flv~Wl~~Lds~P~~--~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~ 253 (675)
T KOG0212|consen 177 Y-VINPMTRQFLVSWLYVLDSVPDL--EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMIN 253 (675)
T ss_pred h-cCCchHHHHHHHHHHHHhcCCcH--HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchh
Confidence 6 67888888888888877655442 1221 235666888899999999977766655543211111111 1 12346
Q ss_pred HHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHH---HHHhhcCCCcccc
Q 002999 368 VLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAAT---IANVVSNPGCWEL 442 (859)
Q Consensus 368 ~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~---L~nL~~~~~~~~~ 442 (859)
.++.-+. .+.++..|+.-|.....-....-...-.|++..++.++.. .+.+.+++.+..+ |..+++......
T Consensus 254 vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~--~e~~~i~~~a~~~n~~l~~l~s~~~~~~- 330 (675)
T KOG0212|consen 254 VLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSD--TEEMSIKEYAQMVNGLLLKLVSSERLKE- 330 (675)
T ss_pred hccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCC--CccccHHHHHHHHHHHHHHHHhhhhhcc-
Confidence 6666666 6677877877777766555544445557777888888854 2334566655544 334444332222
Q ss_pred cccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHH
Q 002999 443 ASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAF 522 (859)
Q Consensus 443 ~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 522 (859)
.+--...+..|.+.+++...+.+..++.-+..|-....+ ++ ...-....+.|+.-|.+++.++...++
T Consensus 331 --------~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~--ql--~~h~~~if~tLL~tLsd~sd~vvl~~L 398 (675)
T KOG0212|consen 331 --------EIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG--QL--LVHNDSIFLTLLKTLSDRSDEVVLLAL 398 (675)
T ss_pred --------ccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc--hh--hhhccHHHHHHHHhhcCchhHHHHHHH
Confidence 222234677788888888888888888666555443222 11 122334567888889999999999999
Q ss_pred HHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 523 RLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 523 ~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
.++.+++...+.. ... .++..|+.+...... -....+.-++..|+.
T Consensus 399 ~lla~i~~s~~~~---~~~--~fl~sLL~~f~e~~~--~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 399 SLLASICSSSNSP---NLR--KFLLSLLEMFKEDTK--LLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHhcCcccc---cHH--HHHHHHHHHHhhhhH--HHHhhhhHHHHHHHH
Confidence 9999997322111 111 345556666655443 344455555555543
No 94
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.001 Score=67.88 Aligned_cols=265 Identities=15% Similarity=0.106 Sum_probs=152.3
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHH
Q 002999 242 TKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLA 321 (859)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~ 321 (859)
...++.+|.+.++.++..|+..|..++.. ..+.-.....-.++.|.+++. ..++ .+.|+.+|.|++....-+..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~-~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLK-DLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHcc-Cccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45688999999999999999999999877 222222223446888888888 3343 6789999999999988888877
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCCcchHHHHH
Q 002999 322 AAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILVD 401 (859)
Q Consensus 322 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 401 (859)
.. .+..++.++.......-..++..|.|++..++.... .+.++. +++.
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~------------------------ll~~~~---~~~~---- 128 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAA------------------------LLTNLT---EKKD---- 128 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHH------------------------HHHhcc---cccc----
Confidence 76 677777777665455555566666666654432111 111111 1111
Q ss_pred cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccc--hHHHHHHhhcCCChHHHH-HHHH
Q 002999 402 SALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSES--IVSSLLGLLSGVSPQCQV-STLR 478 (859)
Q Consensus 402 ~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~--~i~~Ll~LL~~~~~~~~~-~a~~ 478 (859)
.|.......+..... ....--.+-+-++.||+....++.-+ .... .++.|+.+ .+.+..++. ..++
T Consensus 129 ~~lm~l~~~~~d~~~-n~~a~f~ylA~vf~nls~~~~gR~l~---------~~~k~~p~~kll~f-t~~~s~vRr~Gvag 197 (353)
T KOG2973|consen 129 SGLMRLARAFCDKSY-NAYAEFHYLAPVFANLSQFEAGRKLL---------LEPKRFPDQKLLPF-TSEDSQVRRGGVAG 197 (353)
T ss_pred cchHHHHHHHhCccc-ccccchhHHHHHHHHHhhhhhhhhHh---------cchhhhhHhhhhcc-cccchhhhccchHH
Confidence 333333333333211 11233456677777887776665532 2222 12233332 233334443 3566
Q ss_pred HHHHhccCChhHHHHHHHHhhCC---------------------CHHHHHHhhc-----CCChhHHHHHHHHHHHHhhhc
Q 002999 479 ILCGIASSPQAAESVATHIKSGD---------------------GIKYIIQFLE-----HPEVEHRTYAFRLTRILSERI 532 (859)
Q Consensus 479 aL~~La~~~~~~~~~~~~i~~~g---------------------~i~~Lv~lL~-----~~~~~v~~~A~~~L~~Ls~~~ 532 (859)
+|.|+|.+...+..+.. .+.. .+|.=+++|. .+++.+|..-+.+|..|+ .
T Consensus 198 tlkN~cFd~~~h~~lL~--e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLc--a 273 (353)
T KOG2973|consen 198 TLKNCCFDAKLHEVLLD--ESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLC--A 273 (353)
T ss_pred HHHhhhccchhHHHHhc--chHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHH--h
Confidence 77777766443221111 0111 1222123332 346678888888888885 3
Q ss_pred cHHHHHhcCCCCchHHHHHhhccCCC
Q 002999 533 GQDLAYALKPFDKLVLFKDKILDNQS 558 (859)
Q Consensus 533 ~~~~~~~l~~~g~i~~Lv~lL~~~~~ 558 (859)
...-++.+.. .++.++++-+.....
T Consensus 274 T~~GRe~lR~-kgvYpilRElhk~e~ 298 (353)
T KOG2973|consen 274 TRAGREVLRS-KGVYPILRELHKWEE 298 (353)
T ss_pred hhHhHHHHHh-cCchHHHHHHhcCCC
Confidence 4455666666 667778887776654
No 95
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.92 E-value=4.9e-05 Score=67.61 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=102.3
Q ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHH
Q 002999 403 ALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCG 482 (859)
Q Consensus 403 G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~ 482 (859)
|.+..|+.-... ..+.+.+++...=|+|.+-++.+|. .+.+.+++..++..|...+..+.+.++..|||
T Consensus 16 ~Ylq~LV~efq~--tt~~eakeqv~ANLANFAYDP~Nys---------~Lrql~vLdlFvdsl~e~ne~LvefgIgglCN 84 (173)
T KOG4646|consen 16 EYLQHLVDEFQT--TTNIEAKEQVTANLANFAYDPINYS---------HLRQLDVLDLFVDSLEEQNELLVEFGIGGLCN 84 (173)
T ss_pred HHHHHHHHHHHH--hccHHHHHHHHHHHHhhccCcchHH---------HHHHhhHHHHHHHHhhcccHHHHHHhHHHHHh
Confidence 445666666654 3457899999999999999999987 46778899999999999999999999999999
Q ss_pred hccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCC
Q 002999 483 IASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKP 542 (859)
Q Consensus 483 La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~ 542 (859)
+|-++.+ .+.|++++|++.++..+.++...+...|+..+..|+. .+...++.+..
T Consensus 85 lC~d~~n----~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~-~~Rt~r~ell~ 139 (173)
T KOG4646|consen 85 LCLDKTN----AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF-GERTERDELLS 139 (173)
T ss_pred hccChHH----HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC-cccchhHHhcc
Confidence 9999765 4778899999999999999999888889999999973 33444555554
No 96
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.1e-05 Score=74.75 Aligned_cols=52 Identities=15% Similarity=0.428 Sum_probs=44.3
Q ss_pred cccCcccccccCC--CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc
Q 002999 76 NFLCPLTKQVMKE--PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP 133 (859)
Q Consensus 76 ~~~cpi~~~~m~d--Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p 133 (859)
-|.||||++-+.. ||-+.|||.||+.||+..+.. ...||+|+..+.+.++.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~------~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN------TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh------CCCCCCcccccchhhhee
Confidence 3899999998876 666899999999999999987 679999998887766543
No 97
>PHA02926 zinc finger-like protein; Provisional
Probab=97.85 E-value=1.3e-05 Score=77.19 Aligned_cols=53 Identities=17% Similarity=0.372 Sum_probs=42.7
Q ss_pred CcccCcccccccCC---------CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 75 KNFLCPLTKQVMKE---------PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 75 ~~~~cpi~~~~m~d---------Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
++..|+||.+...+ +++.+|+|+||..||.+|.....+.|....||+||+.+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 56889999998644 467799999999999999986433444578999998764
No 98
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.85 E-value=2.9e-05 Score=55.76 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=36.5
Q ss_pred ChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhh
Q 002999 630 NPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLS 670 (859)
Q Consensus 630 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 670 (859)
+++....+.+.|++|.|+++|+++ ++.+++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 356778899999999999999995 9999999999999997
No 99
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.82 E-value=0.0021 Score=72.66 Aligned_cols=267 Identities=16% Similarity=0.099 Sum_probs=174.5
Q ss_pred HHHHHHHhccChhhhhHhhhhhChHHHHHHhh---------cCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcCChHHH
Q 002999 260 AVKLLLEFCIDEAYCKSVASEKGALVLLSSMT---------GNLELPALSNLADEVFKKMER-IEEIVQPLAAAGRFEPL 329 (859)
Q Consensus 260 A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL---------~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i~~L 329 (859)
|+.+|+-++.++.....+.. ..++..|.++- ....+..+...|+.+|+|+.. ++..|..+++.|+.+.+
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 35678888888888888875 55677888877 345678899999999999985 56778889999999999
Q ss_pred HHHhccC-----ChHHHHHHHHHHHHhcCC-CccHH-HHHH-hhHHHHHHHhC---------C----------hhHHHHH
Q 002999 330 INRLCQG-----SDNVQIEMAFLVGKLTLT-NSCKE-HIAR-QCAKVLVELLS---------K----------PAGRAAS 382 (859)
Q Consensus 330 v~lL~~~-----~~~~~~~aa~~L~~la~~-~~~~~-~i~~-~gi~~Lv~lL~---------~----------~~~~~~a 382 (859)
++.|... +.++.....+.|.-+... .+.+. .+.+ +|+..++..|. . ......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999766 788888888988877653 34444 4444 45565655443 1 1234558
Q ss_pred HHHHHHhhCCCcchHHHHHcCcHHHHHHHHhcc------CCCCHHHHHHHHHHHHHhhcCCCcc-cccccccc--cCccc
Q 002999 383 LKALYNLSGLDDNATILVDSALLPALTDILFKS------HDASPELKELAAATIANVVSNPGCW-ELASADKL--GHSMQ 453 (859)
Q Consensus 383 ~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~------~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~~~~~--~~~l~ 453 (859)
++.|.|+..+......-.+.+.++.|+.++... ..+......++..+|.|+-...... .......+ ...-.
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 899999987664432223456677777766542 2334567778888888873211110 00000000 00123
Q ss_pred ccchHHHHHHhhcCC----C----hHHHHHHHHHHHHhccCChhHHHHHHHHhh---------------C-CCHHHHHHh
Q 002999 454 SESIVSSLLGLLSGV----S----PQCQVSTLRILCGIASSPQAAESVATHIKS---------------G-DGIKYIIQF 509 (859)
Q Consensus 454 ~~~~i~~Ll~LL~~~----~----~~~~~~a~~aL~~La~~~~~~~~~~~~i~~---------------~-g~i~~Lv~l 509 (859)
....+..|+.+|... . .+...-.+.+|.+++.... .+|+.++. . ..-..|+++
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~---~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR---EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL 316 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH---HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence 345677888877421 1 1344456777778877642 33444443 2 334479999
Q ss_pred hcCCChhHHHHHHHHHHHHhh
Q 002999 510 LEHPEVEHRTYAFRLTRILSE 530 (859)
Q Consensus 510 L~~~~~~v~~~A~~~L~~Ls~ 530 (859)
+.+..+.++..+...|+.|++
T Consensus 317 mt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999973
No 100
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.0089 Score=67.10 Aligned_cols=365 Identities=15% Similarity=0.143 Sum_probs=208.4
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHH
Q 002999 283 ALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIA 362 (859)
Q Consensus 283 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~ 362 (859)
.++.|..-+. ...+.+++....+|..+....+... ..-..+-+.+++......-+.-++..++.+..+......-.
T Consensus 97 ~~~~~~~~~~-tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~ 172 (569)
T KOG1242|consen 97 IIEILLEELD-TPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE 172 (569)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh
Confidence 4556666666 6677777777777766653322211 01134457777777777777778887877766553333333
Q ss_pred HhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCc
Q 002999 363 RQCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGC 439 (859)
Q Consensus 363 ~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~ 439 (859)
...+..|-..+. +..-++.+.-+....+.+-. ...+.+.++.+-.++.+..+....+++.|..+...+..+-..
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 333456666665 22233323333222222111 235667788888888776667778888888888777554332
Q ss_pred ccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHH
Q 002999 440 WELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRT 519 (859)
Q Consensus 440 ~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 519 (859)
.. ..-.+++++.-+....=..+..++..|..|+..... +-.......+|.|...|.+..+++|.
T Consensus 250 ~a------------VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~----qLs~~lp~iiP~lsevl~DT~~evr~ 313 (569)
T KOG1242|consen 250 YA------------VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK----QLSLCLPDLIPVLSEVLWDTKPEVRK 313 (569)
T ss_pred ch------------hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH----HHHHHHhHhhHHHHHHHccCCHHHHH
Confidence 21 123344444333222114456677777777766432 11233446789999999999999999
Q ss_pred HHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhh
Q 002999 520 YAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTH 599 (859)
Q Consensus 520 ~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~ 599 (859)
.+..+|..+....+.. .|. ..+|.|++.+.++.. .+.. ++.+.
T Consensus 314 a~~~~l~~~~svidN~---dI~--~~ip~Lld~l~dp~~--~~~e------------------------------~~~~L 356 (569)
T KOG1242|consen 314 AGIETLLKFGSVIDNP---DIQ--KIIPTLLDALADPSC--YTPE------------------------------CLDSL 356 (569)
T ss_pred HHHHHHHHHHHhhccH---HHH--HHHHHHHHHhcCccc--chHH------------------------------HHHhh
Confidence 9999998886322111 122 467888888877763 1200 11110
Q ss_pred cccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhccccccc
Q 002999 600 KSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAE 679 (859)
Q Consensus 600 ~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~ 679 (859)
... . |...-++..... ++|.|-+-|... +..+++.++...+|++.-.++-...
T Consensus 357 ~~t------------------t---FV~~V~~psLal-----mvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~l 409 (569)
T KOG1242|consen 357 GAT------------------T---FVAEVDAPSLAL-----MVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDL 409 (569)
T ss_pred cce------------------e---eeeeecchhHHH-----HHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHH
Confidence 000 0 111112222222 267787778875 8889999999999998764321111
Q ss_pred CCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCc
Q 002999 680 DTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSK 759 (859)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~ 759 (859)
..+ -...++.|=..+.+..++++..|..||+.+..+
T Consensus 410 apf-----------------------------------------l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~--- 445 (569)
T KOG1242|consen 410 APF-----------------------------------------LPSLLPGLKENLDDAVPEVRAVAARALGALLER--- 445 (569)
T ss_pred hhh-----------------------------------------HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH---
Confidence 000 011244444555567899999999999999865
Q ss_pred chhhHHHHHHhcCChHHHHHHhhh
Q 002999 760 NFKRGVDELEREGALDAVVDLFTE 783 (859)
Q Consensus 760 ~~~~~~~~i~~~g~i~~L~~ll~~ 783 (859)
.|.... .+-+|.+.+.+.+
T Consensus 446 ---~g~~~f--~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 446 ---LGEVSF--DDLIPELSETLTS 464 (569)
T ss_pred ---HHhhcc--cccccHHHHhhcc
Confidence 111111 4556666666643
No 101
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.02 Score=64.95 Aligned_cols=214 Identities=16% Similarity=0.131 Sum_probs=135.5
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcChHHH
Q 002999 242 TKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER-IEEIVQPL 320 (859)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i 320 (859)
-+-++.+|++.-+-+|..|+.+|+.+..... +++ ..++|.|+.=|. .+||.++..|..+++.|+. +|.|.-.+
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYP--eAl---r~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYP--EAL---RPCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhh--HhH---hhhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 3467778888888888888888888765432 122 336788888888 7888888888888888884 67776443
Q ss_pred HhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCC-cchHHH
Q 002999 321 AAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLD-DNATIL 399 (859)
Q Consensus 321 ~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~-~~~~~i 399 (859)
-|.+..+|.+.+- .-+...-++...+|+-.. .-.+
T Consensus 220 -----AP~ffkllttSsN-------------------------------------NWmLIKiiKLF~aLtplEPRLgK-- 255 (877)
T KOG1059|consen 220 -----APLFYKLLVTSSN-------------------------------------NWVLIKLLKLFAALTPLEPRLGK-- 255 (877)
T ss_pred -----cHHHHHHHhccCC-------------------------------------CeehHHHHHHHhhccccCchhhh--
Confidence 3556666644321 111222334444444332 1222
Q ss_pred HHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh--hcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHH
Q 002999 400 VDSALLPALTDILFKSHDASPELKELAAATIANV--VSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTL 477 (859)
Q Consensus 400 ~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL--~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~ 477 (859)
-.+++|..++.+. ..+.+.-.|..++-.. ..+.++.. -.-.-+++.|-.++.+.++.++--++
T Consensus 256 ---KLieplt~li~sT--~AmSLlYECvNTVVa~s~s~g~~d~~----------asiqLCvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 256 ---KLIEPITELMEST--VAMSLLYECVNTVVAVSMSSGMSDHS----------ASIQLCVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred ---hhhhHHHHHHHhh--HHHHHHHHHHHHheeehhccCCCCcH----------HHHHHHHHHHhhhhhcCCccHHHHHH
Confidence 2467888888652 2244444444443321 11111111 11133577787888899999999999
Q ss_pred HHHHHhccC-ChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 478 RILCGIASS-PQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 478 ~aL~~La~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
-++..+..- +.. ++. --+.+++.|.+.++.+|..|+.+|..+.
T Consensus 321 lam~KI~ktHp~~---Vqa------~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 321 LAMSKILKTHPKA---VQA------HKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHHHhhhCHHH---HHH------hHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 999998764 332 111 2366788999999999999999999885
No 102
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.80 E-value=0.0002 Score=63.88 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=104.1
Q ss_pred CcHHHHHHHHhc-CCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhh
Q 002999 195 GVVLLIVKLLKS-SSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY 273 (859)
Q Consensus 195 g~i~~Lv~lL~~-~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 273 (859)
+.+..||.-... .+. +.++..+.-|.|++.|+-|...+.+..+++.++..|...+....+.+...|+|++.++.+
T Consensus 16 ~Ylq~LV~efq~tt~~----eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNI----EAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred HHHHHHHHHHHHhccH----HHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 445556655543 455 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC-cChHHHHh
Q 002999 274 CKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIE-EIVQPLAA 322 (859)
Q Consensus 274 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~-~~~~~i~~ 322 (859)
.+.|. +.+++|.++..++ ++...+...|+.+|..|+... ..+..+..
T Consensus 92 ~~~I~-ea~g~plii~~ls-sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 92 AKFIR-EALGLPLIIFVLS-SPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHH-HhcCCceEEeecC-CChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99997 5899999999999 888888999999999999643 44555544
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.77 E-value=3.6e-05 Score=81.01 Aligned_cols=51 Identities=29% Similarity=0.513 Sum_probs=45.7
Q ss_pred ccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc
Q 002999 77 FLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP 133 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p 133 (859)
+.|.|++++-++||+- .|||.|||+-||+++.+ +.+||+|+++|+.++++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e------~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE------TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH------cCCCCCCCCcCCHHHeee
Confidence 5799999999999987 68999999999999998 669999999998766653
No 104
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.7e-05 Score=79.63 Aligned_cols=51 Identities=14% Similarity=0.337 Sum_probs=45.7
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLEL 131 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l 131 (859)
..+.|-||.+-+.||--+||||.||=+||.+|..+ +.-||+||++++...+
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e------k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE------KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc------ccCCCcccccCCCcce
Confidence 45999999999999999999999999999999988 5679999998866544
No 105
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.73 E-value=2.7e-05 Score=55.94 Aligned_cols=39 Identities=33% Similarity=0.442 Sum_probs=35.7
Q ss_pred CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 002999 314 EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLT 352 (859)
Q Consensus 314 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la 352 (859)
++++..+++.|+||+|+++|.+++++++.+++++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999999999886
No 106
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.72 E-value=0.0096 Score=65.28 Aligned_cols=247 Identities=19% Similarity=0.186 Sum_probs=164.6
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhh
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYC 274 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~ 274 (859)
-.++.+++++.+.+. .++..|...|..+.. .-+++.+..+|.+.+..++..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~----~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~------- 101 (335)
T COG1413 43 EAADELLKLLEDEDL----LVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGEL------- 101 (335)
T ss_pred hhHHHHHHHHcCCCH----HHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------
Confidence 467888999988876 889999888665532 35799999999999999999999977777
Q ss_pred hHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChH------------HHH
Q 002999 275 KSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDN------------VQI 342 (859)
Q Consensus 275 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~------------~~~ 342 (859)
....+++.|+.++..+++..++..+..+|..+-. ..++.+|+..+.+.... ++.
T Consensus 102 ----~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 102 ----GDPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ----CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 2356889999999955888899999999887753 23488899999776532 233
Q ss_pred HHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCH
Q 002999 343 EMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASP 420 (859)
Q Consensus 343 ~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~ 420 (859)
.++..|+.+.. ...++.+..+++ +..++..|..+|..+.... ..+.+.+...+. +...
T Consensus 168 ~a~~~l~~~~~---------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~---~~~~ 227 (335)
T COG1413 168 AAAEALGELGD---------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALS---DESL 227 (335)
T ss_pred HHHHHHHHcCC---------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhc---CCCH
Confidence 33333332211 223567777777 6678888888888886544 234456666663 3566
Q ss_pred HHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhC
Q 002999 421 ELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSG 500 (859)
Q Consensus 421 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~ 500 (859)
.++..++.+|.. +..+..+..+...+...+..+.......+... .. .
T Consensus 228 ~vr~~~~~~l~~-------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~------------~ 274 (335)
T COG1413 228 EVRKAALLALGE-------------------IGDEEAVDALAKALEDEDVILALLAAAALGAL--DL------------A 274 (335)
T ss_pred HHHHHHHHHhcc-------------------cCcchhHHHHHHHHhccchHHHHHHHHHhccc--Cc------------h
Confidence 777777777653 22344567777777777665555444444311 10 1
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 501 DGIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 501 g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
.....+...+.+....++..+..++....
T Consensus 275 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 275 EAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred hhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 12345555666666667766666665553
No 107
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.017 Score=59.49 Aligned_cols=323 Identities=14% Similarity=0.141 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHhcccC-cch----HHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHH--H
Q 002999 214 ILRSKALMALLSMAKD-EES----KKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALV--L 286 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~-~~~----r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~--~ 286 (859)
.++..++..+..+..+ +.| -..++.+|.++.++..+...+.++...|...+..++..+..-+.|+. ..... .
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFe-SellDdlh 175 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFE-SELLDDLH 175 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcc-cccCChHH
Confidence 7788888888877777 433 23456789999999999999999999999999999998887777764 22221 2
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCCccHHHHHHh
Q 002999 287 LSSMTGNLELPALSNLADEVFKKMER-IEEIVQPLAAAGRFEPLINRLCQ-GSDNVQIEMAFLVGKLTLTNSCKEHIARQ 364 (859)
Q Consensus 287 Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~la~~~~~~~~i~~~ 364 (859)
++.+.. ..+.-++......+..+.+ +++.....-..|.+..|..-|.- .+.-+..++......|+..+..++++.+.
T Consensus 176 lrnlaa-kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQe 254 (524)
T KOG4413|consen 176 LRNLAA-KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQE 254 (524)
T ss_pred HhHHHh-hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchh
Confidence 233322 3344556666777777765 45555566778888888777753 44556677777888888888899999887
Q ss_pred hH-HHHHHHhC----ChhHHHHHHHHHHHh----hCCCcchHHHHHc--CcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002999 365 CA-KVLVELLS----KPAGRAASLKALYNL----SGLDDNATILVDS--ALLPALTDILFKSHDASPELKELAAATIANV 433 (859)
Q Consensus 365 gi-~~Lv~lL~----~~~~~~~a~~aL~~L----s~~~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL 433 (859)
|+ ..+-.++. +|--+-.++.....+ +..+-..++++++ -+|+.-.+.+.. .++...+.|..++.-+
T Consensus 255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEm---nDpdaieaAiDalGil 331 (524)
T KOG4413|consen 255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEM---NDPDAIEAAIDALGIL 331 (524)
T ss_pred hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhc---CCchHHHHHHHHHHhc
Confidence 75 66667776 443444344333333 3222222333332 123333344433 3467889999999888
Q ss_pred hcCCCcccccccccccCcccccc--hHHHHH-HhhcCCChHHHHHHHHHHHHhccC---Ch-------hHHHHHHHHhhC
Q 002999 434 VSNPGCWELASADKLGHSMQSES--IVSSLL-GLLSGVSPQCQVSTLRILCGIASS---PQ-------AAESVATHIKSG 500 (859)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~~--~i~~Ll-~LL~~~~~~~~~~a~~aL~~La~~---~~-------~~~~~~~~i~~~ 500 (859)
-++.++.. .+...| ....++ +........-++.++.+|.+++.. +. ..+.++..+.++
T Consensus 332 GSnteGad---------lllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifda 402 (524)
T KOG4413|consen 332 GSNTEGAD---------LLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDA 402 (524)
T ss_pred cCCcchhH---------HHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHH
Confidence 66665543 233222 222222 222222223445566666666543 11 112222222221
Q ss_pred -------CCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHH
Q 002999 501 -------DGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKD 551 (859)
Q Consensus 501 -------g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~ 551 (859)
.-...+...++.+.++++..+.+.+..++ ..+-...+.+.+.+.|+..+.
T Consensus 403 aaqstkldPleLFlgilqQpfpEihcAalktfTAia-aqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 403 AAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA-AQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH-cCcHHHHHHhcCccceeeecc
Confidence 34455677888889999999999999887 334444444555566555443
No 108
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.095 Score=58.04 Aligned_cols=298 Identities=12% Similarity=0.028 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhC-ch-HHHHHHhcCC-CHHHHHHHHHHHHH-hccChhhhhHhhhhhChHHHHHH
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEG-VT-KSVIHSLIGN-SEKEKEYAVKLLLE-FCIDEAYCKSVASEKGALVLLSS 289 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g-~i-~~Lv~lL~~~-~~~~~~~A~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~ 289 (859)
..+.+++.++++.+..+.-...+...+ .+ ......++.+ +..+|..|+.+|.+ +-.-..+-..-...+-.......
T Consensus 149 ~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvce 228 (858)
T COG5215 149 SGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCE 228 (858)
T ss_pred HhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeeh
Confidence 788999999999998744433333333 22 2333344443 35567777777776 32211100000000112333344
Q ss_pred hhcCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC-cc----H-----
Q 002999 290 MTGNLELPALSNLADEVFKKMER-IEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN-SC----K----- 358 (859)
Q Consensus 290 lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~-~~----~----- 358 (859)
.-+ ++|.+++..|..+|..+.. .-....-..+.-......+.+.+.++++...+...=..++..+ +. +
T Consensus 229 atq-~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~ 307 (858)
T COG5215 229 ATQ-GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEV 307 (858)
T ss_pred hcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccC
Confidence 444 7899999999999988864 3333344445444455566778899999999887665555422 11 1
Q ss_pred -----HHH---HHhhHHHHHHHhC--Ch-------hHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhc-cCCCCH
Q 002999 359 -----EHI---ARQCAKVLVELLS--KP-------AGRAASLKALYNLSGLDDNATILVDSALLPALTDILFK-SHDASP 420 (859)
Q Consensus 359 -----~~i---~~~gi~~Lv~lL~--~~-------~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~ 420 (859)
.+. ....+|.|+.+|. ++ ..-.+|..||--.+.... .. ++.+.+.+... -..++.
T Consensus 308 p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~-----i~~pVl~FvEqni~~~~w 380 (858)
T COG5215 308 PAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DK-----IMRPVLGFVEQNIRSESW 380 (858)
T ss_pred chhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hH-----hHHHHHHHHHHhccCchh
Confidence 111 1223588888886 22 244455555554432211 12 23344444432 124668
Q ss_pred HHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhC
Q 002999 421 ELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSG 500 (859)
Q Consensus 421 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~ 500 (859)
.-++.|+.++..+-..+..-.. .-.-..++|.+..+.++..--++...+|++..++.+- -..|-.+
T Consensus 381 ~nreaavmAfGSvm~gp~~~~l--------T~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v------a~~i~p~ 446 (858)
T COG5215 381 ANREAAVMAFGSVMHGPCEDCL--------TKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV------AMIISPC 446 (858)
T ss_pred hhHHHHHHHhhhhhcCccHHHH--------HhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH------HHhcCcc
Confidence 8899999999987554432211 1223556677777766555578899999999998762 1223344
Q ss_pred CCHHHHHHhhc---CCChhHHHHHHHHHHHHhhhcc
Q 002999 501 DGIKYIIQFLE---HPEVEHRTYAFRLTRILSERIG 533 (859)
Q Consensus 501 g~i~~Lv~lL~---~~~~~v~~~A~~~L~~Ls~~~~ 533 (859)
|-++..++-+- .+++.+-.+++|...||..+..
T Consensus 447 ~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 447 GHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred ccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 44554444221 2456778889999999985443
No 109
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.8e-05 Score=85.50 Aligned_cols=67 Identities=25% Similarity=0.510 Sum_probs=55.2
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhcc
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
+++.||||.+.|++|++++|||+||+.||..++.. ...||.|+. .. ..+.+|..+...++.....+.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~------~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWEG------PLSCPVCRP-PS-RNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcCC------CcCCcccCC-ch-hccCccHHHHHHHHHHHhcCC
Confidence 56999999999999999999999999999999982 579999985 22 266688777777777766553
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.65 E-value=0.018 Score=63.06 Aligned_cols=247 Identities=21% Similarity=0.216 Sum_probs=157.8
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHH
Q 002999 240 GVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQP 319 (859)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~ 319 (859)
..++.+++++.+.+..++..|+..+..+- ..-+++.|..++. +.++.++..|+.+|.++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~-d~~~~vr~~a~~aLg~~~-------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLS-DEDPRVRDAAADALGELG-------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhc-CCCHHHHHHHHHHHHccC--------
Confidence 46889999999988889988888866552 2458899999999 888899999988766663
Q ss_pred HHhcCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhCC-h-------------hHHHHHHH
Q 002999 320 LAAAGRFEPLINRLC-QGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLSK-P-------------AGRAASLK 384 (859)
Q Consensus 320 i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~-~-------------~~~~~a~~ 384 (859)
....+++|+.+|. +.+..++..++.+|+.+-. ..++.+|+.++.+ . .++..+..
T Consensus 103 --~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~---------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 --DPEAVPPLVELLENDENEGVRAAAARALGKLGD---------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred --ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc---------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2236889999998 6889999999999986653 2346677777772 2 12333333
Q ss_pred HHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHh
Q 002999 385 ALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGL 464 (859)
Q Consensus 385 aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~L 464 (859)
+|..+ .+.-.++.+..++.. ....++..|+.+|..+.... ..+...+...
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~---~~~~vr~~Aa~aL~~~~~~~-----------------~~~~~~l~~~ 221 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLED---EDADVRRAAASALGQLGSEN-----------------VEAADLLVKA 221 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhC---chHHHHHHHHHHHHHhhcch-----------------hhHHHHHHHH
Confidence 33333 223456677777754 34467777777777554432 2345667777
Q ss_pred hcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCC
Q 002999 465 LSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFD 544 (859)
Q Consensus 465 L~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g 544 (859)
+...+..++..++.+|..+-... .++.++..+...+..++..+..++... ....
T Consensus 222 ~~~~~~~vr~~~~~~l~~~~~~~--------------~~~~l~~~l~~~~~~~~~~~~~~~~~~------------~~~~ 275 (335)
T COG1413 222 LSDESLEVRKAALLALGEIGDEE--------------AVDALAKALEDEDVILALLAAAALGAL------------DLAE 275 (335)
T ss_pred hcCCCHHHHHHHHHHhcccCcch--------------hHHHHHHHHhccchHHHHHHHHHhccc------------Cchh
Confidence 77777777777777776653331 346666777776666554443333211 1112
Q ss_pred chHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 545 KLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 545 ~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
....+...+.+... .++..++..+..+..
T Consensus 276 ~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~ 304 (335)
T COG1413 276 AALPLLLLLIDEAN--AVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHhhcchh--hHHHHHHHHHHhhcc
Confidence 33444444444443 555666666665554
No 111
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.018 Score=66.11 Aligned_cols=280 Identities=15% Similarity=0.130 Sum_probs=181.0
Q ss_pred hCchHHHHHHhcCCCHHHHHHHH-HHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYAV-KLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV 317 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A~-~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~ 317 (859)
.|.++.+-.-|.+.....+..|+ .++..++...+ -.+..+.+++... ..|.+.++-+-.-|.|-+......
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~D-------vSslF~dvvk~~~-T~dlelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKD-------VSSLFPDVVKCMQ-TRDLELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcc-------hHhhhHHHHhhcc-cCCchHHHHHHHHHHHhhccCchH
Confidence 34556666656555555555554 46666766643 2456778888888 788888888877788877543332
Q ss_pred HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcc
Q 002999 318 QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDN 395 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~ 395 (859)
. .+++..++.=..+.++..+..|.+.++-+-. ..+.+....+|.+.++ ++.++..++-+..++ ++.+
T Consensus 84 a----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-----~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~ 152 (734)
T KOG1061|consen 84 A----ILAVNTFLKDCEDPNPLIRALALRTMGCLRV-----DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDID 152 (734)
T ss_pred H----HhhhhhhhccCCCCCHHHHHHHhhceeeEee-----hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCC
Confidence 1 2355566665667777777666665543221 1233444578888888 888888888888877 4556
Q ss_pred hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHH
Q 002999 396 ATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVS 475 (859)
Q Consensus 396 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~ 475 (859)
.+...+.|.++.|-.++. +.++.+..+|+.+|..+.....+... .......+..++..+..-+.--|..
T Consensus 153 ~~~~~~~gl~~~L~~ll~---D~~p~VVAnAlaaL~eI~e~~~~~~~--------~~l~~~~~~~lL~al~ec~EW~qi~ 221 (734)
T KOG1061|consen 153 PDLVEDSGLVDALKDLLS---DSNPMVVANALAALSEIHESHPSVNL--------LELNPQLINKLLEALNECTEWGQIF 221 (734)
T ss_pred hhhccccchhHHHHHHhc---CCCchHHHHHHHHHHHHHHhCCCCCc--------ccccHHHHHHHHHHHHHhhhhhHHH
Confidence 667778999999999995 35668999999999999876654221 2333445566666554444334444
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhcc
Q 002999 476 TLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILD 555 (859)
Q Consensus 476 a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~ 555 (859)
.+.++.+-.-.+. .+... .+..+...+++.++.+...+.+.+..+...... ..+.+.+ ..-++|+.++.+
T Consensus 222 IL~~l~~y~p~d~--~ea~~------i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~-K~~~pl~tlls~ 291 (734)
T KOG1061|consen 222 ILDCLAEYVPKDS--REAED------ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFK-KVAPPLVTLLSS 291 (734)
T ss_pred HHHHHHhcCCCCc--hhHHH------HHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHH-Hhcccceeeecc
Confidence 4555544433322 12222 356777888999999999999999888755544 3333333 566888888877
Q ss_pred CCC
Q 002999 556 NQS 558 (859)
Q Consensus 556 ~~~ 558 (859)
...
T Consensus 292 ~~e 294 (734)
T KOG1061|consen 292 ESE 294 (734)
T ss_pred cch
Confidence 663
No 112
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.60 E-value=0.00019 Score=61.55 Aligned_cols=87 Identities=26% Similarity=0.347 Sum_probs=69.6
Q ss_pred hHHHHHhh-cCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcch
Q 002999 643 MTIFRDQL-SFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLC 721 (859)
Q Consensus 643 i~~Lv~lL-~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (859)
||.|++.| +++ ++.+|..|+.+|+++.
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~--------------------------------------------------- 28 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALGELG--------------------------------------------------- 28 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHHCCT---------------------------------------------------
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHcC---------------------------------------------------
Confidence 58899999 664 9999999999998542
Q ss_pred hhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHH
Q 002999 722 LLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLE 798 (859)
Q Consensus 722 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~ 798 (859)
...+++.|+++++++++.|+..|+.+|+.+..+ .+++.|.+++.+..+..++..|..+|.
T Consensus 29 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~---------------~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 29 --DPEAIPALIELLKDEDPMVRRAAARALGRIGDP---------------EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH---------------HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 124699999999999999999999999988632 377888898875445566888888763
No 113
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.018 Score=61.71 Aligned_cols=260 Identities=14% Similarity=0.115 Sum_probs=181.9
Q ss_pred HHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccCh------h----hhhHhhhhhChHH
Q 002999 216 RSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE------A----YCKSVASEKGALV 285 (859)
Q Consensus 216 ~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~------~----~~~~i~~~~g~i~ 285 (859)
....++-+..++.-|+.--.+++-++++.|+.+|.+.+.++....+.+|.+|+..+ + .-..+. +.+.++
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv-dg~vla 179 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV-DGQVLA 179 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH-hccHHH
Confidence 34566777888888888888999999999999999999999999999999998753 1 233444 477899
Q ss_pred HHHHhhc--C---CCChHHHHHHHHHHHHhcC-CCcChHHHHhcCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCCc-
Q 002999 286 LLSSMTG--N---LELPALSNLADEVFKKMER-IEEIVQPLAAAGRFEPLINRLCQ--GSDNVQIEMAFLVGKLTLTNS- 356 (859)
Q Consensus 286 ~Lv~lL~--~---~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i~~Lv~lL~~--~~~~~~~~aa~~L~~la~~~~- 356 (859)
.||.-+. + .++.....+....+.|+.. .++....+++.|.+.-|+..+.. .-+.-+..+...|+-+..+.+
T Consensus 180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e 259 (536)
T KOG2734|consen 180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE 259 (536)
T ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch
Confidence 9998887 1 1222345667788889885 46667888999999888886643 335567778888887766554
Q ss_pred cHHHHHH-hhHHHHHHHhC-----Ch------hHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHH
Q 002999 357 CKEHIAR-QCAKVLVELLS-----KP------AGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKE 424 (859)
Q Consensus 357 ~~~~i~~-~gi~~Lv~lL~-----~~------~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~ 424 (859)
++..... .|+..|++-+. +| +..++-..+|..+-..++|+..+....++....-+++. ....+.
T Consensus 260 ~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~----Kk~sr~ 335 (536)
T KOG2734|consen 260 NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE----KKVSRG 335 (536)
T ss_pred hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH----HHHhhh
Confidence 6777754 67877777555 32 35566777888887888999999999888877766654 234566
Q ss_pred HHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhc-C--------CCh-HHHHHHHHHHHHhccC
Q 002999 425 LAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLS-G--------VSP-QCQVSTLRILCGIASS 486 (859)
Q Consensus 425 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~-~--------~~~-~~~~~a~~aL~~La~~ 486 (859)
-+..+|-....++++... +...++..+...++.+.- . .++ +.-++.+..|+++-.+
T Consensus 336 SalkvLd~am~g~~gt~~------C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 336 SALKVLDHAMFGPEGTPN------CNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred hHHHHHHHHHhCCCchHH------HHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 788899888887765432 112344444555544432 1 122 4556666666666443
No 114
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.57 E-value=8e-05 Score=54.52 Aligned_cols=43 Identities=33% Similarity=0.753 Sum_probs=37.1
Q ss_pred cCcccccccCCCeecC-CCchhcHHHHHHHHHhcccCCCCCCCCCCCcc
Q 002999 78 LCPLTKQVMKEPVVLE-SAQAYERKAIEYWFERCLEDGRDPTCPVTGQV 125 (859)
Q Consensus 78 ~cpi~~~~m~dPv~~~-~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~ 125 (859)
.|||+.+.+.+|+.+. |||.|++.++.+|+.. + ...||.++..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~----~-~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS----G-KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh----C-cCCCCCCCCc
Confidence 4999999999998765 9999999999999986 3 5789999764
No 115
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.031 Score=62.87 Aligned_cols=354 Identities=16% Similarity=0.089 Sum_probs=208.6
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhh
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCK 275 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 275 (859)
.+..+..-+..+++ .+|+....+|..+....+... ..-..+.+.++|+......+..|+..++.+..+.-..
T Consensus 97 ~~~~~~~~~~tps~----~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~- 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSK----SVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE- 168 (569)
T ss_pred HHHHHHHhcCCCcH----HHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh-
Confidence 34566666666666 889988888877654422111 1235778888999888888999999999887764322
Q ss_pred HhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh---ccCChHHHHHHHHHHHHhc
Q 002999 276 SVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL---CQGSDNVQIEMAFLVGKLT 352 (859)
Q Consensus 276 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL---~~~~~~~~~~aa~~L~~la 352 (859)
.+ .+.+.+..|...+.+..+..-++.+.-+.-.++.+- ....+.+.++.+-.+| .+....++..+..+...+.
T Consensus 169 ~~-~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 169 SL-KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIM 244 (569)
T ss_pred hh-hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 12 246677778888773222222332332222222111 1223444555555555 4556667766655544322
Q ss_pred CCCccHHHHHHhhH----HHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHH
Q 002999 353 LTNSCKEHIARQCA----KVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELA 426 (859)
Q Consensus 353 ~~~~~~~~i~~~gi----~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a 426 (859)
. .+...|+ |+++.-+. .=..+.+++..|..++.+.+.+-......++|.|.+.|-. ..+.+++.+
T Consensus 245 ~------~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D---T~~evr~a~ 315 (569)
T KOG1242|consen 245 R------CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD---TKPEVRKAG 315 (569)
T ss_pred H------hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc---CCHHHHHHH
Confidence 1 1112233 33333222 2356788999999998888888888888999999999943 568999999
Q ss_pred HHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccC----ChhHHHHHHHHhhCCC
Q 002999 427 AATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASS----PQAAESVATHIKSGDG 502 (859)
Q Consensus 427 ~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~----~~~~~~~~~~i~~~g~ 502 (859)
-.+|..++.--++.. | ...++.|+..+.+++..+. .++..|..=+.- +.+ ... .
T Consensus 316 ~~~l~~~~svidN~d----------I--~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~ps----Lal-----m 373 (569)
T KOG1242|consen 316 IETLLKFGSVIDNPD----------I--QKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPS----LAL-----M 373 (569)
T ss_pred HHHHHHHHHhhccHH----------H--HHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchh----HHH-----H
Confidence 999999877554432 1 3457777777766552222 233333221110 111 111 2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhc-cHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHH
Q 002999 503 IKYIIQFLEHPEVEHRTYAFRLTRILSERI-GQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVK 581 (859)
Q Consensus 503 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~ 581 (859)
+|.|.+-+...+..+++.++..+.|++.-. ++.....+.. ..+|.|-..+.+.. +++|..++.+|+.+-.+-.. .
T Consensus 374 vpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~--PEvR~vaarAL~~l~e~~g~-~ 449 (569)
T KOG1242|consen 374 VPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAV--PEVRAVAARALGALLERLGE-V 449 (569)
T ss_pred HHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHh-h
Confidence 455555566667788899999999998433 2222122221 35566666666663 59999999999877652221 1
Q ss_pred HHHHhccHHHHHHHHhh
Q 002999 582 TLLEATFIKWIVITLQT 598 (859)
Q Consensus 582 ~l~~~g~v~~L~~lL~~ 598 (859)
. ..+.+|++...+.+
T Consensus 450 ~--f~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 450 S--FDDLIPELSETLTS 464 (569)
T ss_pred c--ccccccHHHHhhcc
Confidence 1 15556666666544
No 116
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.011 Score=65.19 Aligned_cols=289 Identities=16% Similarity=0.139 Sum_probs=183.5
Q ss_pred HHHHHHHHHhcCCcchh-HHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcC
Q 002999 173 ALDIVFKISEEHPSNRY-RVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIG 251 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~-~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~ 251 (859)
+..-|-++.++-...+. .+.-.+.||.|-.-+...++ ..|.--+.-|..|-.-++....=.-...++-|..+|+.
T Consensus 144 ~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~----~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 144 GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP----MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD 219 (675)
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC
Confidence 55555555443322232 34444566777666666666 78888888777775555443332335567788889999
Q ss_pred CCHHHHHHHHHHH----HHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChH
Q 002999 252 NSEKEKEYAVKLL----LEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFE 327 (859)
Q Consensus 252 ~~~~~~~~A~~~L----~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~ 327 (859)
++.+++..+-.+| .++..++..- .....++.++.-+. +.++.++..|..-+.....-........-.|.+.
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~-ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~ 294 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSPSSM----DYDDMINVLVPHLQ-SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILT 294 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCcccc----Ccccchhhcccccc-CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhh
Confidence 8888886655544 4444444321 23457888898888 8899999999888888776665555555567777
Q ss_pred HHHHHhccCChH-HHHHHHH---HHHHhcCCCccHHHHHHhh-HHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHH
Q 002999 328 PLINRLCQGSDN-VQIEMAF---LVGKLTLTNSCKEHIARQC-AKVLVELLS--KPAGRAASLKALYNLSGLDDNATILV 400 (859)
Q Consensus 328 ~Lv~lL~~~~~~-~~~~aa~---~L~~la~~~~~~~~i~~~g-i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~ 400 (859)
.++..+.+..+. .+..+.. .|..+......+..+.-+. +..|.+.+. ..+.+.+++.-+..|-...+++-...
T Consensus 295 ~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h 374 (675)
T KOG0212|consen 295 AILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVH 374 (675)
T ss_pred hcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhh
Confidence 777777655443 3322222 2333333333333343232 477777777 67788888888888877777776666
Q ss_pred HcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHH
Q 002999 401 DSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRIL 480 (859)
Q Consensus 401 ~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL 480 (859)
.....+.|+.-|. +.+..+...++.+|+++|.++..... -.++..|+.+......-+...+.-++
T Consensus 375 ~~~if~tLL~tLs---d~sd~vvl~~L~lla~i~~s~~~~~~------------~~fl~sLL~~f~e~~~~l~~Rg~lII 439 (675)
T KOG0212|consen 375 NDSIFLTLLKTLS---DRSDEVVLLALSLLASICSSSNSPNL------------RKFLLSLLEMFKEDTKLLEVRGNLII 439 (675)
T ss_pred ccHHHHHHHHhhc---CchhHHHHHHHHHHHHHhcCcccccH------------HHHHHHHHHHHhhhhHHHHhhhhHHH
Confidence 6677888888884 46678999999999999998755321 23455566665554444555555555
Q ss_pred HHhcc
Q 002999 481 CGIAS 485 (859)
Q Consensus 481 ~~La~ 485 (859)
..||.
T Consensus 440 RqlC~ 444 (675)
T KOG0212|consen 440 RQLCL 444 (675)
T ss_pred HHHHH
Confidence 55554
No 117
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.46 E-value=0.00015 Score=51.02 Aligned_cols=39 Identities=36% Similarity=0.915 Sum_probs=34.6
Q ss_pred CcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCC
Q 002999 79 CPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVT 122 (859)
Q Consensus 79 cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t 122 (859)
|||+.+..++|++++|||.|+..++.+|+.. + ...||++
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~----~-~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS----G-NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh----C-cCCCCCC
Confidence 8999999999999999999999999999983 2 5679974
No 118
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.014 Score=65.40 Aligned_cols=295 Identities=14% Similarity=0.109 Sum_probs=184.4
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC---C----
Q 002999 242 TKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI---E---- 314 (859)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~---~---- 314 (859)
...|+.+....+..++..|+..|..|+..-..-+. +....+++++ .++..++..|..+++-.+.. +
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 33388888889999999999999999874333222 4566788888 77788888886665544421 1
Q ss_pred cChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC-ChhHHHHHHHHHHHh--hC
Q 002999 315 EIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS-KPAGRAASLKALYNL--SG 391 (859)
Q Consensus 315 ~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~-~~~~~~~a~~aL~~L--s~ 391 (859)
.+...+.+ .++..+...+++.+-.++.+|+.+|+.+-.-. .++|.+.--..++.-++ ..-..+....-..+- |+
T Consensus 273 ~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS--ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 273 SEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS--EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhH--HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 12233333 35667778888889999999999988553211 11111111122222222 111111122222222 00
Q ss_pred ------------CCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHH
Q 002999 392 ------------LDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVS 459 (859)
Q Consensus 392 ------------~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~ 459 (859)
.++.-..|+..|+-..+|.-|.. .-.++++.|...++.|+.+.+... ...+.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~FA-------------~~ald 413 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSSPGFA-------------VRALD 413 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCCCCcH-------------HHHHH
Confidence 11223457888998999988854 457999999999999999887655 44678
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHh
Q 002999 460 SLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYA 539 (859)
Q Consensus 460 ~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~ 539 (859)
-|+.++++...+++..|+.+|..++.+-.-.+ .-++.+..-|.+.+.++|+..-.+|.+.- ..+.+....
T Consensus 414 fLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~e---------eql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~~i~m 483 (823)
T KOG2259|consen 414 FLVDMFNDEIEVVRLKAIFALTMISVHLAIRE---------EQLRQILESLEDRSVDVREALRELLKNAR-VSDLECIDM 483 (823)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHheecH---------HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 89999998888999999999999987632222 23577788889999999998888887763 333332222
Q ss_pred cCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH
Q 002999 540 LKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV 580 (859)
Q Consensus 540 l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 580 (859)
.+..|...|..-.+ -+-...++++.+..++...
T Consensus 484 -----~v~~lL~~L~kyPq---Drd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 484 -----CVAHLLKNLGKYPQ---DRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred -----HHHHHHHHhhhCCC---CcHHHHHHHHHHhccChhh
Confidence 23334443332221 1334566677777765543
No 119
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.087 Score=60.56 Aligned_cols=291 Identities=15% Similarity=0.165 Sum_probs=162.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHH
Q 002999 458 VSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLA 537 (859)
Q Consensus 458 i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~ 537 (859)
|..+-+-|+++++.++..|+++|..+--.- +.. | .+-.+-+...+..+.||..|+.++-.|-. .+.+..
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRvp~-----IaP-I----~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k 178 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRVPM-----IAP-I----MLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQK 178 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcchhh-----HHH-H----HHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhH
Confidence 566667788999999999999998873321 111 1 12233345567788999999999998852 222222
Q ss_pred HhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHh
Q 002999 538 YALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEG 617 (859)
Q Consensus 538 ~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~ 617 (859)
.. .++.+-.||.+.+. -|...|+.+.-.++-+.-++ +. +-...++++|.+.. .|-+--
T Consensus 179 ~q-----L~e~I~~LLaD~sp--lVvgsAv~AF~evCPerldL---IH-knyrklC~ll~dvd-----------eWgQvv 236 (968)
T KOG1060|consen 179 DQ-----LEEVIKKLLADRSP--LVVGSAVMAFEEVCPERLDL---IH-KNYRKLCRLLPDVD-----------EWGQVV 236 (968)
T ss_pred HH-----HHHHHHHHhcCCCC--cchhHHHHHHHHhchhHHHH---hh-HHHHHHHhhccchh-----------hhhHHH
Confidence 22 33445556666665 78788888888777544332 11 22344555554421 233444
Q ss_pred hhhhhhhcccC---------------------------------CChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 002999 618 LLGLLLHFTRS---------------------------------VNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAH 664 (859)
Q Consensus 618 ~~~~L~~~~~~---------------------------------~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~ 664 (859)
++..|.++++. .|++..-.+. ..--||.+. ++.|-..+|.
T Consensus 237 lI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~------stkpLl~S~-n~sVVmA~aq 309 (968)
T KOG1060|consen 237 LINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQ------STKPLLQSR-NPSVVMAVAQ 309 (968)
T ss_pred HHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHH------hccHHHhcC-CcHHHHHHHh
Confidence 55555555432 1222222221 122345564 7777777777
Q ss_pred HhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHH
Q 002999 665 GLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEI 744 (859)
Q Consensus 665 aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 744 (859)
+..+++-..+ ..+.+++||++|.+. .++++
T Consensus 310 l~y~lAP~~~-------------------------------------------------~~~i~kaLvrLLrs~-~~vqy 339 (968)
T KOG1060|consen 310 LFYHLAPKNQ-------------------------------------------------VTKIAKALVRLLRSN-REVQY 339 (968)
T ss_pred HHHhhCCHHH-------------------------------------------------HHHHHHHHHHHHhcC-Ccchh
Confidence 7777653321 123467777766643 55666
Q ss_pred HHHHHHHhhhhccCcchhhH---------------------HHHHHhcCChHHHHHHhhh---cCchhHHHHHHHHHHHH
Q 002999 745 AAVEALSTLIIDTSKNFKRG---------------------VDELEREGALDAVVDLFTE---VRPGLLQERTVWMLERV 800 (859)
Q Consensus 745 ~A~~aL~~L~~d~~~~~~~~---------------------~~~i~~~g~i~~L~~ll~~---~~~~~~~~~A~~~l~~~ 800 (859)
..+..+++++.....-+++. ...++..+-|..+++-++. +.+.+.-..|+.++.++
T Consensus 340 vvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrC 419 (968)
T KOG1060|consen 340 VVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRC 419 (968)
T ss_pred hhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 66666666654300000000 1124445555555444432 23444556667777777
Q ss_pred Hh-ccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002999 801 LR-VEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLKQ 844 (859)
Q Consensus 801 ~~-~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 844 (859)
.. ..... +.. ..-||.++.+.|..+-..|+-+++.|=+
T Consensus 420 A~~~~sv~-----~tC-L~gLv~Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 420 ASRIGSVT-----DTC-LNGLVQLLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHhhCchh-----hHH-HHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 63 11111 122 2789999999999988888877776644
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.44 E-value=0.00035 Score=59.81 Aligned_cols=86 Identities=24% Similarity=0.348 Sum_probs=70.2
Q ss_pred chHHHhhh-ccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcccc
Q 002999 728 IKPLVDLL-AEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGH 806 (859)
Q Consensus 728 i~~Lv~lL-~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~ 806 (859)
|+.|++.| +++++.++..|+.+|+++-.. .+++.|.+++. ++++.++..|+++|.++-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~---------------~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP---------------EAIPALIELLK-DEDPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH---------------HHHHHHHHHHT-SSSHHHHHHHHHHHHCCH-----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH---------------hHHHHHHHHHc-CCCHHHHHHHHHHHHHhC-----
Confidence 57899999 899999999999999976522 34788999997 599999999999999872
Q ss_pred ccccccchhhHHHHHHHhhcCC-hhhHHHHHHHHH
Q 002999 807 SHRYSLNQSLVRALVEAFKHGN-ANAKRHAQEALT 840 (859)
Q Consensus 807 ~~~~~~~~~~~~~Lv~ll~~~~-~~~~~~A~~~L~ 840 (859)
+...+..|++++++.+ ..+|..|..+|.
T Consensus 60 ------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3445689999998876 556999998874
No 121
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.42 E-value=0.0083 Score=67.88 Aligned_cols=284 Identities=13% Similarity=0.101 Sum_probs=162.0
Q ss_pred HHHHHHHhcCCcchhHHHhcCcHHHHHHHHh--c----CCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHH
Q 002999 175 DIVFKISEEHPSNRYRVRNAGVVLLIVKLLK--S----SSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIH 247 (859)
Q Consensus 175 ~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~--~----~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~ 247 (859)
..|+-+.. ++.+-..+....++..|+++-. . .....+..+...|+++|+|+... +..|+..++.|..+.++.
T Consensus 3 ~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 3 ETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 34444443 3334444555455555555540 0 01112338999999999999887 888999999999999999
Q ss_pred HhcCC-----CHHHHHHHHHHHHHhcc-ChhhhhHhhhhhChHHHHHHhhcC--------C--------CChHHHHHHHH
Q 002999 248 SLIGN-----SEKEKEYAVKLLLEFCI-DEAYCKSVASEKGALVLLSSMTGN--------L--------ELPALSNLADE 305 (859)
Q Consensus 248 lL~~~-----~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~--------~--------~~~~~~~~a~~ 305 (859)
.|+.. +.+..-...++|.-++. ..+.+..+..+.+++..|+..|.. . .+......++.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 99986 67788888899888775 456777777777888888776640 1 13445677888
Q ss_pred HHHHhcCCCcChHHHHhcCChHHHHHHhcc---------CChHHHHHHHHHHHHhcCCCccH--------HHHH-----H
Q 002999 306 VFKKMERIEEIVQPLAAAGRFEPLINRLCQ---------GSDNVQIEMAFLVGKLTLTNSCK--------EHIA-----R 363 (859)
Q Consensus 306 aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~---------~~~~~~~~aa~~L~~la~~~~~~--------~~i~-----~ 363 (859)
++.|+..+......=...+.++.|+.+|.. ........+..+|.|+-...... ..+. .
T Consensus 162 llFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 162 LLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 889997543322211234566666666532 23556677777777773221110 0010 0
Q ss_pred hhHHHHHHHhCChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC-Ccccc
Q 002999 364 QCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNP-GCWEL 442 (859)
Q Consensus 364 ~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~-~~~~~ 442 (859)
..+..|+.+|. ..+. ...... . ...+.+++.+|.........++ ..|....--+ ..+..
T Consensus 242 ~~v~~Ll~~Ld-~~l~-----------~~~~~~---l-~~~l~PlL~lL~~~~~~~~~~R----k~lr~~lLP~~~Dr~~ 301 (446)
T PF10165_consen 242 DVVERLLDFLD-KRLD-----------KYEALK---L-DELLTPLLTLLTRLARAAREVR----KYLRARLLPPDKDRKK 301 (446)
T ss_pred HHHHHHHHHHH-HHHH-----------hcCccc---c-hhhHhhHHHHHHHHHHhcHHHH----HHHHHHhCCChhhccc
Confidence 12344555544 0000 000000 1 2234455555543111111222 2222211111 11111
Q ss_pred cccccccCccc-ccchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 002999 443 ASADKLGHSMQ-SESIVSSLLGLLSGVSPQCQVSTLRILCGIASSP 487 (859)
Q Consensus 443 ~~~~~~~~~l~-~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~ 487 (859)
.+. ....-..|++++.+..+.++..+...|+.||..+
T Consensus 302 --------~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 302 --------PPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred --------CCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 111 2345678999999988999999999999999764
No 122
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.41 E-value=0.043 Score=61.11 Aligned_cols=260 Identities=16% Similarity=0.163 Sum_probs=152.1
Q ss_pred HHHHHHhC--ChhHHHHHHHHHHHhhCCCcc---hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCccc
Q 002999 367 KVLVELLS--KPAGRAASLKALYNLSGLDDN---ATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWE 441 (859)
Q Consensus 367 ~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~---~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 441 (859)
...+.+|+ .+.++..|+.....|+.--.+ -+.+...|. .|.+-|. +..+++.--.+.+++.+.+...-..
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lg---e~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLG---EDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcC---cccHHHHHHHHHHHHHHhhhhcccc
Confidence 44555666 677777777766666532111 122333343 2344442 3445666666666666654432221
Q ss_pred ccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHH
Q 002999 442 LASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYA 521 (859)
Q Consensus 442 ~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 521 (859)
-. ---.+++|.|..+|++.+..++.+.+..+..+|......-..++.++ .---|+++|.+.+.++|++|
T Consensus 682 mq--------pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A 750 (975)
T COG5181 682 MQ--------PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNA 750 (975)
T ss_pred cC--------CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhh
Confidence 10 11257889999999999999999988888888776433222344443 23468899999999999999
Q ss_pred HHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcc
Q 002999 522 FRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKS 601 (859)
Q Consensus 522 ~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~ 601 (859)
...+.++++..+ ..+.+..|++-|+..+- ..+....-+++-.+. -.|-+..+-.++.+..+
T Consensus 751 ~~tfG~Is~aiG--------PqdvL~~LlnnLkvqeR--q~RvctsvaI~iVae---------~cgpfsVlP~lm~dY~T 811 (975)
T COG5181 751 TETFGCISRAIG--------PQDVLDILLNNLKVQER--QQRVCTSVAISIVAE---------YCGPFSVLPTLMSDYET 811 (975)
T ss_pred hhhhhhHHhhcC--------HHHHHHHHHhcchHHHH--HhhhhhhhhhhhhHh---------hcCchhhHHHHHhcccC
Confidence 999999984332 22344455554443322 222222222222221 02222222235555433
Q ss_pred cccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 602 SFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 602 ~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
+...++-|++.+++.+-..........+ +-+.|.|-+.|.+. ++.-|..|+..+.+|+.+
T Consensus 812 --------Pe~nVQnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 812 --------PEANVQNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred --------chhHHHHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence 2234677777777765432222222222 35678888999986 999999999999998765
No 123
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.064 Score=60.79 Aligned_cols=306 Identities=17% Similarity=0.190 Sum_probs=187.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC--hhHHHHHHHHHHHHhhhccHH
Q 002999 458 VSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE--VEHRTYAFRLTRILSERIGQD 535 (859)
Q Consensus 458 i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~~L~~Ls~~~~~~ 535 (859)
+..+-.=|.+.+|....-|+.++.|+..... ++.+. .-++ .+|.+++ +-+|..|+-+|..|-+.. ++
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re~-----~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~s-pD 181 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSREM-----AEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKS-PD 181 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHhH-----HHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcC-cc
Confidence 3444444556677788888899999866532 22221 2233 4555554 367777766666664332 22
Q ss_pred HHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcc--ccc----CCCCC
Q 002999 536 LAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKS--SFN----TRSSR 609 (859)
Q Consensus 536 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~--~~~----~r~~~ 609 (859)
.+...+...+++.+|.+.+- .+..++...+-.|++.++.- ..+.++.-+..|...-. +.. .....
T Consensus 182 ---l~~~~~W~~riv~LL~D~~~--gv~ta~~sLi~~lvk~~p~~----yk~~~~~avs~L~riv~~~~t~~qdYTyy~v 252 (938)
T KOG1077|consen 182 ---LVNPGEWAQRIVHLLDDQHM--GVVTAATSLIEALVKKNPES----YKTCLPLAVSRLSRIVVVVGTSLQDYTYYFV 252 (938)
T ss_pred ---ccChhhHHHHHHHHhCcccc--ceeeehHHHHHHHHHcCCHH----HhhhHHHHHHHHHHHHhhcccchhhceeecC
Confidence 34444789999999988775 77788888888888876653 12333333333332211 110 01445
Q ss_pred CcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCC-ChHHHHH-HHHHHh----hhhhhhcccccccCCCC
Q 002999 610 PISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFP-SKARVKQ-LAAHGL----KNLSEAGRSLCAEDTGS 683 (859)
Q Consensus 610 ~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~vk~-~Aa~aL----~~ls~~~~~~~~~~~~~ 683 (859)
+..|++-+++.+|..+..+.|+..+.... .+...+....+.. .+..++. .|.-|+ -+|+.+-
T Consensus 253 P~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~---------- 320 (938)
T KOG1077|consen 253 PAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL---------- 320 (938)
T ss_pred CChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc----------
Confidence 67899999999999997777777665542 2233333333321 0122222 222221 1222110
Q ss_pred CCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhh
Q 002999 684 PTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKR 763 (859)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~ 763 (859)
.+.+ -.-..++..|.++|.+.+..++.-|++.++.|+.. . .
T Consensus 321 ---------------D~e~-------------------~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~----~ 361 (938)
T KOG1077|consen 321 ---------------DSEP-------------------ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-E----F 361 (938)
T ss_pred ---------------CCcH-------------------HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-c----c
Confidence 0000 01134688999999999999999999999999964 1 2
Q ss_pred HHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002999 764 GVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLK 843 (859)
Q Consensus 764 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~ 843 (859)
....+..+ .+.++..|...+|..++++|+++|-.++..+. ....+..|..++.+.|+.+|+.-+-=.+=|+
T Consensus 362 s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~N-------ak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 362 SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-------AKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 34455554 77788888855899999999999999985431 2223478999999999999876554444443
No 124
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.042 Score=59.07 Aligned_cols=257 Identities=14% Similarity=0.164 Sum_probs=178.9
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC------c----chHHHHHhhCch
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD------E----ESKKIMLEEGVT 242 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~------~----~~r~~i~~~g~i 242 (859)
.++.+.-++. -|.---.+.+.++|+.|+.+|.+.+. ++-...+..|..|... + ..-..+++.+.+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNt----DI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENT----DIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCc----hhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 4445554443 34444578899999999999999998 8888888888888753 1 234567788899
Q ss_pred HHHHHHhcCCCHHH------HHHHHHHHHHhcc-ChhhhhHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcCC-
Q 002999 243 KSVIHSLIGNSEKE------KEYAVKLLLEFCI-DEAYCKSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKMERI- 313 (859)
Q Consensus 243 ~~Lv~lL~~~~~~~------~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~~- 313 (859)
+.|+.-+.+=+..+ ...+..++-|+.. .++.+..++. +|.+.-|..-+. ...-..-...|.++|.-+-.+
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s 257 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNS 257 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccC
Confidence 99998887543332 4455666777654 4677777764 687777666444 233445577889999988865
Q ss_pred CcChHHHHhcCChHHHHHHhc----cC-----ChHHHHHHHHHHHHhcCCCccHHHHH-HhhHHHHHHHhC-ChhHHHHH
Q 002999 314 EEIVQPLAAAGRFEPLINRLC----QG-----SDNVQIEMAFLVGKLTLTNSCKEHIA-RQCAKVLVELLS-KPAGRAAS 382 (859)
Q Consensus 314 ~~~~~~i~~~G~i~~Lv~lL~----~~-----~~~~~~~aa~~L~~la~~~~~~~~i~-~~gi~~Lv~lL~-~~~~~~~a 382 (859)
++|+..+....+|..+++-+. .+ ..+...+.-.+|+.+.....|+.... ..|+....-+++ ....+..+
T Consensus 258 ~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~Sa 337 (536)
T KOG2734|consen 258 DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSA 337 (536)
T ss_pred chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhH
Confidence 558888999999999999873 22 23455566667887778888887665 456666666666 66778889
Q ss_pred HHHHHHhhCCC---cchHHHHHcCcHHHHHHHHhccCC-------CCHHHHHHHHHHHHHhhc
Q 002999 383 LKALYNLSGLD---DNATILVDSALLPALTDILFKSHD-------ASPELKELAAATIANVVS 435 (859)
Q Consensus 383 ~~aL~~Ls~~~---~~~~~i~~~G~i~~Lv~lL~~~~~-------~~~~~~~~a~~~L~nL~~ 435 (859)
+++|-....++ +++..+++.+++..+..+....+. .....-++.+.+|+.+-.
T Consensus 338 lkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 338 LKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 99999988876 478889999998888776552111 123445555556555543
No 125
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.29 E-value=0.037 Score=60.81 Aligned_cols=314 Identities=14% Similarity=0.085 Sum_probs=186.9
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhH-HHHHHHhC----ChhHHHHHHHHHHHhhCCCcchHHHH
Q 002999 326 FEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCA-KVLVELLS----KPAGRAASLKALYNLSGLDDNATILV 400 (859)
Q Consensus 326 i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi-~~Lv~lL~----~~~~~~~a~~aL~~Ls~~~~~~~~i~ 400 (859)
++.+..++-+++.+++..+-+++..+..+.+.-..+.+-.+ ..++.-|. +..-+++|++.++.+...+.+.+. +
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~ 105 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I 105 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C
Confidence 33444444455588888888999988888877666666555 44455555 445677899999888766443322 2
Q ss_pred HcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHH
Q 002999 401 DSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRIL 480 (859)
Q Consensus 401 ~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL 480 (859)
-.|++..++.+... .+...+..|.++|+.++-.++. .+...|++..|++.+.++..++.+.++.++
T Consensus 106 ~~~vvralvaiae~---~~D~lr~~cletL~El~l~~P~-----------lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l 171 (371)
T PF14664_consen 106 PRGVVRALVAIAEH---EDDRLRRICLETLCELALLNPE-----------LVAECGGIRVLLRALIDGSFSISESLLDTL 171 (371)
T ss_pred CHHHHHHHHHHHhC---CchHHHHHHHHHHHHHHhhCHH-----------HHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence 55788889988865 4568999999999999987754 456789999999998887777999999999
Q ss_pred HHhccCChhHHHHHHHHhhCCCHHHHHHhhcCC-------Chh--HHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHH
Q 002999 481 CGIASSPQAAESVATHIKSGDGIKYIIQFLEHP-------EVE--HRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKD 551 (859)
Q Consensus 481 ~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~--v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~ 551 (859)
..+-.+|.. |+.++..--+..++.-..+. +.+ .-..+..++..+-+..+.-..-......++..||.
T Consensus 172 L~lLd~p~t----R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~ 247 (371)
T PF14664_consen 172 LYLLDSPRT----RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVD 247 (371)
T ss_pred HHHhCCcch----hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHH
Confidence 999888865 34444434455555433222 222 22445556655544333322111112258999999
Q ss_pred hhccCCCchhHHHHHHHHHHHhcC------CcHHH--HHHHHhccHHHHHHHHhhhcccccCCCCC--CcchhHHhhhhh
Q 002999 552 KILDNQSANCERSDAACILANIQL------SEEEV--KTLLEATFIKWIVITLQTHKSSFNTRSSR--PISNIAEGLLGL 621 (859)
Q Consensus 552 lL~~~~~~~~~~~~A~~~L~~L~~------~~~~~--~~l~~~g~v~~L~~lL~~~~~~~~~r~~~--~~~~~~e~~~~~ 621 (859)
.|..+.. +++....-++..+-. .+... +.+...|-+..--++-.....+....+.. ....+...-.
T Consensus 248 ~L~~p~~--~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~-- 323 (371)
T PF14664_consen 248 SLRLPNP--EIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYL-- 323 (371)
T ss_pred HHcCCCH--HHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHH--
Confidence 9998876 677666666655421 00000 11111111100000000000000000000 0000111100
Q ss_pred hhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhh
Q 002999 622 LLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSE 671 (859)
Q Consensus 622 L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 671 (859)
.-....+.+.|+++.|+++..+..++.+...|..-|+.+-.
T Consensus 324 ---------aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 324 ---------ALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred ---------HHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 11233467899999999999985478899999988886644
No 126
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.48 Score=52.74 Aligned_cols=342 Identities=12% Similarity=0.070 Sum_probs=196.1
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHh----cCCC-HHHHHHHHHHHHHhccChhh
Q 002999 199 LIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSL----IGNS-EKEKEYAVKLLLEFCIDEAY 273 (859)
Q Consensus 199 ~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL----~~~~-~~~~~~A~~~L~~Ls~~~~~ 273 (859)
..+..|++..+ .....|...+..++.-+ .-.+..|-|..-+ ..+. ...+.+++.++.+.+.+..-
T Consensus 98 ~al~aL~s~ep----r~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P 167 (858)
T COG5215 98 MALRALKSPEP----RFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP 167 (858)
T ss_pred HHHHHhcCCcc----HHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH
Confidence 45567777777 77788888887776431 1123344444433 3333 35677889999998877544
Q ss_pred hhHhhhhhChHHHHHH-hhcCCCChHHHHHHHHHHHHhc-CCCcChHHHHhcCCh----HHHHHHhccCChHHHHHHHHH
Q 002999 274 CKSVASEKGALVLLSS-MTGNLELPALSNLADEVFKKME-RIEEIVQPLAAAGRF----EPLINRLCQGSDNVQIEMAFL 347 (859)
Q Consensus 274 ~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~aL~nL~-~~~~~~~~i~~~G~i----~~Lv~lL~~~~~~~~~~aa~~ 347 (859)
...+...+.++-.++. -+++..+..++-.|+.+|.+-+ ... ..+...+-. ...++.-+..+.+++..+-.+
T Consensus 168 e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~---~nf~~E~erNy~mqvvceatq~~d~e~q~aafgC 244 (858)
T COG5215 168 EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQ---GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGC 244 (858)
T ss_pred HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH---HhhcchhhhchhheeeehhccCCcHHHHHHHHHH
Confidence 3333322334444443 3445566777888888888832 111 112222222 223344456677888888888
Q ss_pred HHHhcCCC--ccHHHHHHhhH-HHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHH----------------HHcCcH
Q 002999 348 VGKLTLTN--SCKEHIARQCA-KVLVELLS--KPAGRAASLKALYNLSGLD-DNATIL----------------VDSALL 405 (859)
Q Consensus 348 L~~la~~~--~~~~~i~~~gi-~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i----------------~~~G~i 405 (859)
|.++..-. -.+ ..-+... ....+.++ +.++...|..--..++... +....+ .-+.++
T Consensus 245 l~kim~LyY~fm~-~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvl 323 (858)
T COG5215 245 LNKIMMLYYKFMQ-SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVL 323 (858)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHH
Confidence 88765422 223 2223333 44455666 6667666665444444322 111111 123589
Q ss_pred HHHHHHHhccC----CCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhh----cCCChHHHHHHH
Q 002999 406 PALTDILFKSH----DASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLL----SGVSPQCQVSTL 477 (859)
Q Consensus 406 ~~Lv~lL~~~~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL----~~~~~~~~~~a~ 477 (859)
|.|+.+|..++ ++++.....|...|.-.+.... ..++.+.+..+ ++.+-.-++.++
T Consensus 324 P~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g----------------d~i~~pVl~FvEqni~~~~w~nreaav 387 (858)
T COG5215 324 PELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG----------------DKIMRPVLGFVEQNIRSESWANREAAV 387 (858)
T ss_pred HHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh----------------hHhHHHHHHHHHHhccCchhhhHHHHH
Confidence 99999998732 3345566666666655544322 22334444433 344446677888
Q ss_pred HHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC-
Q 002999 478 RILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN- 556 (859)
Q Consensus 478 ~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~- 556 (859)
.++..+-.++.. .....+. ..++|.+..++.++.--++..++|++..+++ .+...+...|.++.-+.-+.-+
T Consensus 388 mAfGSvm~gp~~--~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad----~va~~i~p~~Hl~~~vsa~liGl 460 (858)
T COG5215 388 MAFGSVMHGPCE--DCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIAD----HVAMIISPCGHLVLEVSASLIGL 460 (858)
T ss_pred HHhhhhhcCccH--HHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHH----HHHHhcCccccccHHHHHHHhhh
Confidence 888888776642 2333332 3578888888887778899999999999973 3445566666666555433222
Q ss_pred -CCchhHHHHHHHHHHHhcCCcH
Q 002999 557 -QSANCERSDAACILANIQLSEE 578 (859)
Q Consensus 557 -~~~~~~~~~A~~~L~~L~~~~~ 578 (859)
+. +.+..++.|..-||..+-.
T Consensus 461 ~D~-p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 461 MDC-PFRSINCSWRKENLVDHIA 482 (858)
T ss_pred hcc-chHHhhhHHHHHhHHHhhh
Confidence 22 3566788888888877543
No 127
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.00039 Score=72.13 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=38.9
Q ss_pred cccCcccccc-cCCCe----ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCC
Q 002999 76 NFLCPLTKQV-MKEPV----VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLE 130 (859)
Q Consensus 76 ~~~cpi~~~~-m~dPv----~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~ 130 (859)
+-.||+|+.- ...|- +-+|||+||++||.++|.. | ...||.|+.++....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~----~-~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G-SGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC----C-CCCCCCCCCccchhh
Confidence 4579999983 33442 2379999999999999876 4 578999999887655
No 128
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.20 E-value=0.00059 Score=68.11 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=56.8
Q ss_pred cccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCC-cccCCCCCcchhhhHhHHHHHHHhc
Q 002999 76 NFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTG-QVLKSLELKPNIGLAGAIEEWVNRN 148 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~-~~l~~~~l~pn~~l~~~I~~w~~~~ 148 (859)
.+.||+|+-+++.|+-+ +|||+||.+||+..+.. . ++.||.|. ..+--+.|.|++..+..|+.+...+
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d----s-Df~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD----S-DFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhh----c-cccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 38999999999999966 88999999999988876 2 78999984 3344578999999988899887744
No 129
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.0041 Score=67.86 Aligned_cols=194 Identities=15% Similarity=0.089 Sum_probs=140.0
Q ss_pred HHHHHHHhcccC-cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCC
Q 002999 218 KALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLEL 296 (859)
Q Consensus 218 ~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 296 (859)
.++.+|..++.. .-.|..+.+....+.|+++|+.++..+.--+...++++...-.+-+.-.-+.|.|..|+.++. +.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~-sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM-SKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh-cch
Confidence 344555556555 556778888889999999999876655666777788876654443333346899999999999 888
Q ss_pred hHHHHHHHHHHHHhcCCCcC--hHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC-c---cHHHH-----HHhh
Q 002999 297 PALSNLADEVFKKMERIEEI--VQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN-S---CKEHI-----ARQC 365 (859)
Q Consensus 297 ~~~~~~a~~aL~nL~~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~-~---~~~~i-----~~~g 365 (859)
..++.+..++|+++..+.++ +-+....-++..++.+.+++.-.++.++...|.|+..+. . .+... .+.-
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 89999999999999866443 335667778999999999999999999999999997732 2 22222 1223
Q ss_pred HHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHH--cCcHHHHHHHH
Q 002999 366 AKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVD--SALLPALTDIL 412 (859)
Q Consensus 366 i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~G~i~~Lv~lL 412 (859)
...|++.+. +|-.....+-.|.+++..+++.+.++. ...+..+-+.|
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 467777777 776677778999999988877654443 34444444444
No 130
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.18 E-value=0.00032 Score=51.13 Aligned_cols=40 Identities=13% Similarity=0.391 Sum_probs=33.7
Q ss_pred Cccccccc---CCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCc
Q 002999 79 CPLTKQVM---KEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQ 124 (859)
Q Consensus 79 cpi~~~~m---~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~ 124 (859)
||++.+.+ ..|++++|||+|+..+|.++... ...||++++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~------~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK------SVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC------CCCCcCCCC
Confidence 88999888 24778999999999999999932 679999864
No 131
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.18 E-value=0.35 Score=53.78 Aligned_cols=454 Identities=16% Similarity=0.134 Sum_probs=221.2
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCCh-HHHHHHHHHHHHhcCCCccHHHH
Q 002999 283 ALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSD-NVQIEMAFLVGKLTLTNSCKEHI 361 (859)
Q Consensus 283 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~-~~~~~aa~~L~~la~~~~~~~~i 361 (859)
..-.+.++.+ +.|+.++...-.++..|+...+.... +...+++=++.|.+ .++-.|.+.|..+.-.+
T Consensus 66 lff~i~KlFQ-hkd~~Lrq~VY~aIkelS~~tedvlm-----~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~------ 133 (898)
T COG5240 66 LFFAILKLFQ-HKDLYLRQCVYSAIKELSKLTEDVLM-----GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE------ 133 (898)
T ss_pred HHHHHHHHHh-cCChHHHHHHHHHHHHHhhcchhhhH-----HHHHHHHhhccCCccccccHHHHHHHHhcCcc------
Confidence 3445556666 78888888888888888865443221 23345555555544 55555666555433211
Q ss_pred HHhhHHHHHHHhC------ChhHHHHHHHHHHHhhCCCcch--HHHHHcCcHHHHHHHHhc---------cCCCCHHHHH
Q 002999 362 ARQCAKVLVELLS------KPAGRAASLKALYNLSGLDDNA--TILVDSALLPALTDILFK---------SHDASPELKE 424 (859)
Q Consensus 362 ~~~gi~~Lv~lL~------~~~~~~~a~~aL~~Ls~~~~~~--~~i~~~G~i~~Lv~lL~~---------~~~~~~~~~~ 424 (859)
-++..-++|. ++..+.+|+-.-+.|-....+. +..-+ .-+..+.+-+. .+..+.-.+-
T Consensus 134 ---tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne--~qeav~~l~q~p~~~~n~gy~Pn~~~isqY 208 (898)
T COG5240 134 ---TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNE--TQEAVLDLKQFPNQHGNEGYEPNGNPISQY 208 (898)
T ss_pred ---hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHH--HHHHHhhHhhCcCccCCcccCCCCChHHHH
Confidence 1222222222 4445555555555554444332 22211 11111222211 1123445677
Q ss_pred HHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHH-----HHHHHHHhccCChhHHHHHHHHhh
Q 002999 425 LAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVS-----TLRILCGIASSPQAAESVATHIKS 499 (859)
Q Consensus 425 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~-----a~~aL~~La~~~~~~~~~~~~i~~ 499 (859)
+|++.|..+-.++ .-+.-.|++++.... .++.+ ..++...+-..+. +.+..
T Consensus 209 HalGlLyq~kr~d-----------------kma~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~---q~~~q--- 264 (898)
T COG5240 209 HALGLLYQSKRTD-----------------KMAQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENS---QALLQ--- 264 (898)
T ss_pred HHHHHHHHHhccc-----------------HHHHHHHHHHhhccc-ccccchhheehHHHHHHHHHhCh---HHHHH---
Confidence 7888887654432 113345566554433 22222 2333333332221 11221
Q ss_pred CCCHHHHHHhhcCCChhHHHHHHHHHHHHhh-hccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcH
Q 002999 500 GDGIKYIIQFLEHPEVEHRTYAFRLTRILSE-RIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEE 578 (859)
Q Consensus 500 ~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~ 578 (859)
..|.|-..+.+.-+-+...++++++.++. ..+++. .+ ..+..|-.+|++... ..+-.|.++|..|+...+
T Consensus 265 --~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~----~~-~~vs~L~~fL~s~rv--~~rFsA~Riln~lam~~P 335 (898)
T COG5240 265 --LRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF----VD-QTVSSLRTFLKSTRV--VLRFSAMRILNQLAMKYP 335 (898)
T ss_pred --HHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH----HH-HHHHHHHHHHhcchH--HHHHHHHHHHHHHHhhCC
Confidence 23556667777778889999999999872 222222 21 356678888888886 788899999999987544
Q ss_pred HHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHH
Q 002999 579 EVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARV 658 (859)
Q Consensus 579 ~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~v 658 (859)
+.-.+.. +.+-.++.+.+ |.. -.-++..|.. .++.+....+. +.||.++.=+++ ..
T Consensus 336 ~kv~vcN----~evEsLIsd~N--------r~I---styAITtLLK---TGt~e~idrLv--~~I~sfvhD~SD----~F 391 (898)
T COG5240 336 QKVSVCN----KEVESLISDEN--------RTI---STYAITTLLK---TGTEETIDRLV--NLIPSFVHDMSD----GF 391 (898)
T ss_pred ceeeecC----hhHHHHhhccc--------ccc---hHHHHHHHHH---cCchhhHHHHH--HHHHHHHHhhcc----Cc
Confidence 3211111 11112333311 111 1122333322 22333332221 345555544443 34
Q ss_pred HHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccC
Q 002999 659 KQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEE 738 (859)
Q Consensus 659 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 738 (859)
|.-+.-|+..|+..-+.-.. .+.-|-.+ .+|. .||. .| +.-.|..+.+.. +-
T Consensus 392 KiI~ida~rsLsl~Fp~k~~---------------s~l~FL~~---~L~~-eGg~-----eF---K~~~Vdaisd~~-~~ 443 (898)
T COG5240 392 KIIAIDALRSLSLLFPSKKL---------------SYLDFLGS---SLLQ-EGGL-----EF---KKYMVDAISDAM-EN 443 (898)
T ss_pred eEEeHHHHHHHHhhCcHHHH---------------HHHHHHHH---HHHh-cccc-----hH---HHHHHHHHHHHH-hh
Confidence 44444455544433211100 00001000 0011 0000 00 011223333322 34
Q ss_pred ChhHHHHHHHHHHhhhhccCcchhhHHHHHH---hcCC--------hHHHHHHhhhcCchhHHHHHHHHHHHHHhccccc
Q 002999 739 DTNVEIAAVEALSTLIIDTSKNFKRGVDELE---REGA--------LDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHS 807 (859)
Q Consensus 739 ~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~---~~g~--------i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~ 807 (859)
+|+.++.|++-||++..| -+..+-.+..+. +.|- |..+.+-+- ..+.-+|..|+.+|.++.-..+..
T Consensus 444 ~p~skEraLe~LC~fIED-cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i-LEN~ivRsaAv~aLskf~ln~~d~ 521 (898)
T COG5240 444 DPDSKERALEVLCTFIED-CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI-LENNIVRSAAVQALSKFALNISDV 521 (898)
T ss_pred CchHHHHHHHHHHHHHhh-cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH-HhhhHHHHHHHHHHHHhccCcccc
Confidence 677888888888888866 332221111111 1110 222222222 257788888999998887543211
Q ss_pred cccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002999 808 HRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLK 843 (859)
Q Consensus 808 ~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~ 843 (859)
. .-..+...|-.-+.+.|..+|..|.-+|+.+.
T Consensus 522 ~---~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 V---SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred c---cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 1 11234468888999999999999999999886
No 132
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.019 Score=67.60 Aligned_cols=250 Identities=18% Similarity=0.162 Sum_probs=172.8
Q ss_pred hHHHHHHHhccc-----ccHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcch
Q 002999 139 GAIEEWVNRNVE-----VQVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGT 213 (859)
Q Consensus 139 ~~I~~w~~~~~~-----~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~ 213 (859)
.+.|-|...+.. .+++..++-|-+ ...+++ ||.-|.++..-.+-.-.....-|..|-++++|.+...
T Consensus 455 TAFevWLd~gse~r~PPeQLPiVLQVLLS---QvHRlR-AL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~---- 526 (1387)
T KOG1517|consen 455 TAFEVWLDYGSESRTPPEQLPIVLQVLLS---QVHRLR-ALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR---- 526 (1387)
T ss_pred HHHHHHHHhccccCCChHhcchHHHHHHH---HHHHHH-HHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH----
Confidence 356777766543 234555555543 223554 8888877766555444445567999999999999876
Q ss_pred HHHHHHHHHHH-hcccCcchHHHHHhhCchHHHHHHhcCC---CHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHH
Q 002999 214 ILRSKALMALL-SMAKDEESKKIMLEEGVTKSVIHSLIGN---SEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSS 289 (859)
Q Consensus 214 ~~~~~al~~L~-~L~~~~~~r~~i~~~g~i~~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 289 (859)
+++---+-+=. -|+.|+..+..+++.++-...+..|..+ +++-+..|+-+|..+..+-...++-.-..+.|.....
T Consensus 527 ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle 606 (1387)
T KOG1517|consen 527 ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLE 606 (1387)
T ss_pred hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHH
Confidence 55544333322 3566788888899888888888888762 2466777888888888875544444445678888888
Q ss_pred hhcCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC-----CccHHHH--
Q 002999 290 MTGNLELPALSNLADEVFKKMER-IEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT-----NSCKEHI-- 361 (859)
Q Consensus 290 lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~-----~~~~~~i-- 361 (859)
.|.....+-.+..++-+|..|=. .+++|-.=++.++.+.|+.+|.+..++|+..|.-+|+.+..+ ++....+
T Consensus 607 ~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~ 686 (1387)
T KOG1517|consen 607 HLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEE 686 (1387)
T ss_pred HhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhh
Confidence 88832467788999999999975 577777788899999999999999999999999999998763 2221111
Q ss_pred ----------HHhhH----HHHHHHhC--ChhHHHHHHHHHHHhhCCCcch
Q 002999 362 ----------ARQCA----KVLVELLS--KPAGRAASLKALYNLSGLDDNA 396 (859)
Q Consensus 362 ----------~~~gi----~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~ 396 (859)
.+..+ ..++.+++ ++-++...+-+|..+.....+.
T Consensus 687 ~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 687 EIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred hhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 12222 25555666 7777777777777776655443
No 133
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0002 Score=73.78 Aligned_cols=64 Identities=19% Similarity=0.356 Sum_probs=52.2
Q ss_pred cccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC-CCCcchhhhHhHHHHH
Q 002999 76 NFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS-LELKPNIGLAGAIEEW 144 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~-~~l~pn~~l~~~I~~w 144 (859)
+|.||||+.+++--.++ .|+|.||+.||-.-+.+ | +..||.||+.+.. ..|.++......|.+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~----g-n~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS----G-NNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh----c-CCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 48999999999999866 89999999999999988 5 6899999999854 4676666555555443
No 134
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00044 Score=68.78 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=41.9
Q ss_pred CCcccCcccccccCCCeecCCCchhcHHHHHH-HHHhcccCCCCCCCCCCCccc
Q 002999 74 FKNFLCPLTKQVMKEPVVLESAQAYERKAIEY-WFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 74 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~-~~~~~~~~~~~~~cP~t~~~l 126 (859)
..+|.|+||.+.|.+|+-++|||.||-.||.. |-.+ . ..+||+||+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~----k-~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK----K-YEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhh----c-cccCchhhhhc
Confidence 35899999999999999999999999999999 7765 2 45799999765
No 135
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.027 Score=66.30 Aligned_cols=164 Identities=20% Similarity=0.137 Sum_probs=116.3
Q ss_pred HhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCch-hHHHHHHHHHHHhcC
Q 002999 497 IKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSAN-CERSDAACILANIQL 575 (859)
Q Consensus 497 i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~-~~~~~A~~~L~~L~~ 575 (859)
-..-|..|..+.||+++..++|.--+..-..+- ..++..+-.+.+.++-..+++.|..+..++ +-++-|+.+|+.+..
T Consensus 508 aLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKIL-AvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~ 586 (1387)
T KOG1517|consen 508 ALSVGIFPYVLKLLQSSARELRPILVFIWAKIL-AVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR 586 (1387)
T ss_pred hhccchHHHHHHHhccchHhhhhhHHHHHHHHH-hcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc
Confidence 345588999999999999999865555554444 344555566777778888888888755444 667788888888776
Q ss_pred CcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCCh
Q 002999 576 SEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSK 655 (859)
Q Consensus 576 ~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~ 655 (859)
+-. .-|+...+.+.|..-.+.|.++..
T Consensus 587 nf~-----------------------------------------------------lGQ~acl~~~li~iCle~lnd~~~ 613 (1387)
T KOG1517|consen 587 NFK-----------------------------------------------------LGQKACLNGNLIGICLEHLNDDPE 613 (1387)
T ss_pred ccc-----------------------------------------------------hhHHHhccccHHHHHHHHhcCCcc
Confidence 211 112223344556666677777325
Q ss_pred HHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhh
Q 002999 656 ARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLL 735 (859)
Q Consensus 656 ~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL 735 (859)
+..|...+.+|+.|=.+-.. ..++=+..+|.+.|+.+|
T Consensus 614 pLLrQW~~icLG~LW~d~~~------------------------------------------Arw~G~r~~AhekL~~~L 651 (1387)
T KOG1517|consen 614 PLLRQWLCICLGRLWEDYDE------------------------------------------ARWSGRRDNAHEKLILLL 651 (1387)
T ss_pred HHHHHHHHHHHHHHhhhcch------------------------------------------hhhccccccHHHHHHHHh
Confidence 89999999999987544211 111223568899999999
Q ss_pred ccCChhHHHHHHHHHHhhhhc
Q 002999 736 AEEDTNVEIAAVEALSTLIID 756 (859)
Q Consensus 736 ~~~~~~v~~~A~~aL~~L~~d 756 (859)
.++-++|+.+|+-||++++.+
T Consensus 652 sD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 652 SDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cCccHHHHHHHHHHHHHHhcc
Confidence 999999999999999999975
No 136
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.94 E-value=0.029 Score=57.72 Aligned_cols=251 Identities=11% Similarity=0.131 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHhcccCcchHHHHH-hhCchHHHHHHhcC--CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHh
Q 002999 214 ILRSKALMALLSMAKDEESKKIML-EEGVTKSVIHSLIG--NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSM 290 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~-~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l 290 (859)
-.+.-|+.+|.++...++.|..+- +...-..++..++. +....+.+.+-++|-|+.+++..+.|-.--..|..|+++
T Consensus 164 lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i 243 (432)
T COG5231 164 LTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI 243 (432)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999988877654 44456677888875 456788999999999999998886665545678888888
Q ss_pred hcCCCChHHHHHHHHHHHHhcC-CC-cChHHHHhcCChHHHHHHhccC---ChHHHHHHHHHHHHhcCCCccHHHH-HHh
Q 002999 291 TGNLELPALSNLADEVFKKMER-IE-EIVQPLAAAGRFEPLINRLCQG---SDNVQIEMAFLVGKLTLTNSCKEHI-ARQ 364 (859)
Q Consensus 291 L~~~~~~~~~~~a~~aL~nL~~-~~-~~~~~i~~~G~i~~Lv~lL~~~---~~~~~~~aa~~L~~la~~~~~~~~i-~~~ 364 (859)
.+......+...++.++.|++. .+ .....+.-.|-+.+-++.|.++ +++++...-..=..|. +..|..- ...
T Consensus 244 Vk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~--~~~k~l~~fD~ 321 (432)
T COG5231 244 VKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV--QNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH--hhhhhhhHHHH
Confidence 8833455677888999999996 32 3445667777788888888543 3443322221111111 1111111 100
Q ss_pred hH-HHHHHHhC-ChhHHHHHHHHHHHhhCCCcchHHHHHc--CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcc
Q 002999 365 CA-KVLVELLS-KPAGRAASLKALYNLSGLDDNATILVDS--ALLPALTDILFKSHDASPELKELAAATIANVVSNPGCW 440 (859)
Q Consensus 365 gi-~~Lv~lL~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~ 440 (859)
=. +.--+.|. +|.-+....| +.|.+.+.+. .++..|.++|++ +.++..+ .-|+.=+..+....++-
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFW--------s~N~d~l~kdny~i~k~L~~~lq~-n~~nt~i-~vAc~Di~~~Vr~~PE~ 391 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFW--------STNLDMLIKDNYEIVKVLKKYLQS-NNPNTWI-CVACSDIFQLVRASPEI 391 (432)
T ss_pred HHHHHhhCcccCCCcccccCch--------hhhHHHHhhhhHHHHHHHHHHHhc-CCCCceE-eeeHhhHHHHHHhCchH
Confidence 01 11112333 3332222211 2344444443 567889999986 3333233 33444445554444332
Q ss_pred cccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 002999 441 ELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIA 484 (859)
Q Consensus 441 ~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La 484 (859)
.. .+...|+=..++.|+++++++++-.|+.++..+-
T Consensus 392 ~~--------vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 392 NA--------VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HH--------HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 22 3556677788999999999999999999887653
No 137
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.18 Score=57.38 Aligned_cols=346 Identities=14% Similarity=0.115 Sum_probs=187.1
Q ss_pred hhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHH
Q 002999 158 ETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIM 236 (859)
Q Consensus 158 ~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i 236 (859)
.-|.+.++.. +.-||..+.++. +.+.++.+.. -+-++|-+++... .++..|+-+|..|-.. ++. +
T Consensus 118 nDL~srn~~f--v~LAL~~I~niG--~re~~ea~~~-----DI~KlLvS~~~~~--~vkqkaALclL~L~r~spDl---~ 183 (938)
T KOG1077|consen 118 NDLSSRNPTF--VCLALHCIANIG--SREMAEAFAD-----DIPKLLVSGSSMD--YVKQKAALCLLRLFRKSPDL---V 183 (938)
T ss_pred hhhhcCCcHH--HHHHHHHHHhhc--cHhHHHHhhh-----hhHHHHhCCcchH--HHHHHHHHHHHHHHhcCccc---c
Confidence 3355544432 223777777663 2333443332 2347777765422 5666666666666544 331 2
Q ss_pred HhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccCh--hhhhHhhhhhChHHHHHHhhcC------------CCChHHHHH
Q 002999 237 LEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE--AYCKSVASEKGALVLLSSMTGN------------LELPALSNL 302 (859)
Q Consensus 237 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~------------~~~~~~~~~ 302 (859)
--.+-...++.+|...+-.+...+...+-.|+... +.+..+. -++..|-++... -+.|=++..
T Consensus 184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~---~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP---LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH---HHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 22345788899998887777777777777777653 3332221 123333333220 123455666
Q ss_pred HHHHHHHhcC--CCcChHHHHhcCChHHHHHHhccCC--hHH-HHHHHHH----HHHhcCCCccHHHHHHhhHHHHHHHh
Q 002999 303 ADEVFKKMER--IEEIVQPLAAAGRFEPLINRLCQGS--DNV-QIEMAFL----VGKLTLTNSCKEHIARQCAKVLVELL 373 (859)
Q Consensus 303 a~~aL~nL~~--~~~~~~~i~~~G~i~~Lv~lL~~~~--~~~-~~~aa~~----L~~la~~~~~~~~i~~~gi~~Lv~lL 373 (859)
.+++|.++-. ++.++..+.+ +.+.++...++.+ ..+ +.+|-.+ .-+++..-+....+-...+..|-++|
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl 338 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL 338 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 7777776642 2333444433 3344444443211 112 2222222 22333332332223334556677777
Q ss_pred C--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCc
Q 002999 374 S--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHS 451 (859)
Q Consensus 374 ~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 451 (859)
. ...++-.|+..+..|++.....+.+... .+.++..|+. +.+..+++.|+..|..+|..+..
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkt--erDvSirrravDLLY~mcD~~Na------------ 402 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKT--ERDVSIRRRAVDLLYAMCDVSNA------------ 402 (938)
T ss_pred hcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhcc--ccchHHHHHHHHHHHHHhchhhH------------
Confidence 7 6778888888899998887666666555 6778888864 46789999999999988765422
Q ss_pred ccccchHHHHHHhhcCCChHHHHHHHHHHHHhccC----Chh-HHHHHHHHhh------CCCHHHHHHhhcCCChhHHHH
Q 002999 452 MQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASS----PQA-AESVATHIKS------GDGIKYIIQFLEHPEVEHRTY 520 (859)
Q Consensus 452 l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~----~~~-~~~~~~~i~~------~g~i~~Lv~lL~~~~~~v~~~ 520 (859)
..+|..|++-|.+.++.+++..+--.+-|+.. =.- ..-+.+.|+- .+....++++. ..+++++..
T Consensus 403 ---k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiV-vNnedlq~y 478 (938)
T KOG1077|consen 403 ---KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGY 478 (938)
T ss_pred ---HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeE-ecchhhhHH
Confidence 33577888888888888887765544444432 000 0011111111 12233444443 245677777
Q ss_pred HHHHHHHHhhhccHHHHHhcCCCC
Q 002999 521 AFRLTRILSERIGQDLAYALKPFD 544 (859)
Q Consensus 521 A~~~L~~Ls~~~~~~~~~~l~~~g 544 (859)
|++.+...- ......+.+++.|
T Consensus 479 aak~~fe~L--q~~a~hE~mVKvg 500 (938)
T KOG1077|consen 479 AAKRLFEYL--QKPACHENMVKVG 500 (938)
T ss_pred HHHHHHHHH--hhhHHHHHHHHhh
Confidence 766555442 2234445555543
No 138
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.87 E-value=0.00077 Score=55.14 Aligned_cols=39 Identities=18% Similarity=0.646 Sum_probs=32.1
Q ss_pred CcccccccCCC------------e-ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCC
Q 002999 79 CPLTKQVMKEP------------V-VLESAQAYERKAIEYWFERCLEDGRDPTCPVTG 123 (859)
Q Consensus 79 cpi~~~~m~dP------------v-~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~ 123 (859)
|+||++-|.|| + ..+|||.|-..||++|+.. +.+||++|
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~------~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ------NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT------SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc------CCcCCCCC
Confidence 99999999443 3 4489999999999999987 56999986
No 139
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00066 Score=73.90 Aligned_cols=58 Identities=17% Similarity=0.373 Sum_probs=48.6
Q ss_pred cccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcch
Q 002999 76 NFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPN 134 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn 134 (859)
+..||||.+--.=|+.+.|||.||=.||.++|......+ ...||+|+..+...++.|-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~-~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKG-PCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccC-CccCCchhhhccccceeee
Confidence 588999999999999889999999999999999842223 5689999988877677664
No 140
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.84 E-value=0.068 Score=59.61 Aligned_cols=256 Identities=14% Similarity=0.128 Sum_probs=161.0
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcC---hHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHH
Q 002999 283 ALVLLSSMTGNLELPALSNLADEVFKKMERIEEI---VQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKE 359 (859)
Q Consensus 283 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~---~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~ 359 (859)
.+..+..+|+ +..+.++..|+.....|+..-.+ -..+...|.| |.+-|....+++.-....++..+.....-+.
T Consensus 605 ivStiL~~L~-~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLR-SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 4556666777 88899999999888888754332 2345666665 7888888888888777777666554333321
Q ss_pred HH--HHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc----chHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002999 360 HI--ARQCAKVLVELLS--KPAGRAASLKALYNLSGLDD----NATILVDSALLPALTDILFKSHDASPELKELAAATIA 431 (859)
Q Consensus 360 ~i--~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~----~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~ 431 (859)
.- ..+.+|.|.-+|+ ...++.+....+..++...+ .++.+. +-=-|++.|.+ .+.+++..|..++.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks---~nKeiRR~A~~tfG 755 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKS---WNKEIRRNATETFG 755 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHH---hhHHHHHhhhhhhh
Confidence 11 2334588999998 67788888888888887653 245543 22346777876 34689999999988
Q ss_pred HhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhc
Q 002999 432 NVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLE 511 (859)
Q Consensus 432 nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 511 (859)
.++.. +.-.+++..|+.-|+..+-..+....-++.-.+.-... -..+|.|..=-.
T Consensus 756 ~Is~a---------------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp----------fsVlP~lm~dY~ 810 (975)
T COG5181 756 CISRA---------------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP----------FSVLPTLMSDYE 810 (975)
T ss_pred hHHhh---------------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc----------hhhHHHHHhccc
Confidence 77552 33334455555544443323332222222222221100 013455555445
Q ss_pred CCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCC
Q 002999 512 HPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLS 576 (859)
Q Consensus 512 ~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~ 576 (859)
.++..+|...+++++.+-++.++...+.+- -..|.|-..|.+.+. .-+..|+.++..|+.+
T Consensus 811 TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~--vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 811 TPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDP--VHRQTAMNVIRHLVLN 871 (975)
T ss_pred CchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccch--HHHHHHHHHHHHHhcC
Confidence 566688998999998887666665555554 245666677777776 5667788888888765
No 141
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.83 E-value=0.00075 Score=74.53 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=56.7
Q ss_pred CCCCcccCcccccccCCCee-cCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc-hhhhHhHHHHHHHh
Q 002999 72 LPFKNFLCPLTKQVMKEPVV-LESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP-NIGLAGAIEEWVNR 147 (859)
Q Consensus 72 ~~~~~~~cpi~~~~m~dPv~-~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p-n~~l~~~I~~w~~~ 147 (859)
|..+++.||+|..++.||+. +.|||.||+.||..|+.. +..||.++..+......| ...++..|..|...
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~------~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 88 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN------HQKCPVCRQELTQAEELPVPRALRRELLKLPIR 88 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc------CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence 34467999999999999998 599999999999999987 789999988886665555 34557777766543
No 142
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.81 E-value=0.0022 Score=45.71 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=34.3
Q ss_pred CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 002999 314 EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLT 352 (859)
Q Consensus 314 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la 352 (859)
++++..+.+.|++++|+++|.+++++++..++++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346788999999999999999888999999999888876
No 143
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.74 E-value=0.0029 Score=45.10 Aligned_cols=38 Identities=24% Similarity=0.180 Sum_probs=34.0
Q ss_pred hhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhh
Q 002999 632 QTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLS 670 (859)
Q Consensus 632 ~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 670 (859)
+....+.+.|++|.|+++|.++ ++.+++.|+++|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 3556788999999999999985 9999999999999986
No 144
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.74 E-value=0.018 Score=59.23 Aligned_cols=170 Identities=14% Similarity=0.043 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcC--CcchhHHHh--cCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHH
Q 002999 172 KALDIVFKISEEH--PSNRYRVRN--AGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIH 247 (859)
Q Consensus 172 ~al~~L~~l~~~~--~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~ 247 (859)
+|+..|+.++.++ ......+.+ ...++.++..+++... .+...|+.++..++..-...-.-.-...+|.|++
T Consensus 26 ~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs----~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~ 101 (228)
T PF12348_consen 26 EALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS----KVSKTACQLLSDLARQLGSHFEPYADILLPPLLK 101 (228)
T ss_dssp HHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 5888999988877 223333322 1344566666666665 7889999999999876222222223457899999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhCh-HHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHh---
Q 002999 248 SLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGA-LVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAA--- 322 (859)
Q Consensus 248 lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~--- 322 (859)
.+.++...++..|..+|..+...-... ... ++.+...+. +.++.++..++..|..+... +.+...+-.
T Consensus 102 ~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~-~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 102 KLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLK-SKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp GGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 999988889999999999997753311 112 455555566 88999999999998888743 312222221
Q ss_pred -cCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 002999 323 -AGRFEPLINRLCQGSDNVQIEMAFLVGKLT 352 (859)
Q Consensus 323 -~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la 352 (859)
...++.+...+.+++++++..+-.++..+.
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 336677778888888888888877777653
No 145
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.73 E-value=0.00077 Score=69.39 Aligned_cols=62 Identities=15% Similarity=0.371 Sum_probs=49.3
Q ss_pred cccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC----CCcchhhhHhHHHH
Q 002999 76 NFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL----ELKPNIGLAGAIEE 143 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~----~l~pn~~l~~~I~~ 143 (859)
...|++|+..|.|+-++ .|=|||||+||-+||.. ..+||.|+..+-.+ .+.++.+|+..+.+
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~------~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE------SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH------hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 37899999999999955 89999999999999998 68999998766443 34555555555443
No 146
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.049 Score=62.73 Aligned_cols=325 Identities=13% Similarity=0.126 Sum_probs=190.0
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhh
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCK 275 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 275 (859)
...++.+.+++.++ .+|..++-+..++- ..+.+.....|.++.|..++.+.++.+..+|+.+|.++...+....
T Consensus 122 ~~~Pl~~~l~d~~~----yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDP----YVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHhccCCCh----hHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 35678888888888 89999888887763 4456777789999999999998899999999999999976543211
Q ss_pred HhhhhhChHHHHHHhhcCCCChHHHHHH-HHHHHHhcC---CCc-ChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHH
Q 002999 276 SVASEKGALVLLSSMTGNLELPALSNLA-DEVFKKMER---IEE-IVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGK 350 (859)
Q Consensus 276 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~a-~~aL~nL~~---~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~ 350 (859)
......-.+..++..+. +..+++ +.+|-+|+. .+. .... .+..+...|.+.+..+...+...+..
T Consensus 196 ~~~l~~~~~~~lL~al~-----ec~EW~qi~IL~~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALN-----ECTEWGQIFILDCLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred cccccHHHHHHHHHHHH-----HhhhhhHHHHHHHHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHH
Confidence 11001122333333333 122222 333444442 222 1122 23445566677777777777776665
Q ss_pred hcCCCcc-HHHHHHhhHHHHHHHhC-ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHH
Q 002999 351 LTLTNSC-KEHIARQCAKVLVELLS-KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAA 428 (859)
Q Consensus 351 la~~~~~-~~~i~~~gi~~Lv~lL~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~ 428 (859)
+...... ...+...-.++|+.++. .++.+- -+|.|+..--..+. +....-+..+.-...++..++..=+.
T Consensus 266 ~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qy---vaLrNi~lil~~~p-----~~~~~~~~~Ff~kynDPiYvK~eKle 337 (734)
T KOG1061|consen 266 LVKYLKQVNELLFKKVAPPLVTLLSSESEIQY---VALRNINLILQKRP-----EILKVEIKVFFCKYNDPIYVKLEKLE 337 (734)
T ss_pred HHHHHHHHHHHHHHHhcccceeeecccchhhH---HHHhhHHHHHHhCh-----HHHHhHhHeeeeecCCchhhHHHHHH
Confidence 5543322 22333344578888887 333333 33444422111111 11222222222223355678888888
Q ss_pred HHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHH
Q 002999 429 TIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQ 508 (859)
Q Consensus 429 ~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~ 508 (859)
++..++.... +. + .+..|..--..-+++....+++++.+++..-.. +.+.++.|+.
T Consensus 338 il~~la~~~n-------------l~-q-vl~El~eYatevD~~fvrkaIraig~~aik~e~---------~~~cv~~lLe 393 (734)
T KOG1061|consen 338 ILIELANDAN-------------LA-Q-VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ---------SNDCVSILLE 393 (734)
T ss_pred HHHHHhhHhH-------------HH-H-HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh---------hhhhHHHHHH
Confidence 8877755321 11 1 333444444455778899999999999876321 1568999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 509 FLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 509 lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
+++..-..+.+.+...++.+-+..+... +. .+..|..-+.+=+. ++.+.+-.|+|+.-+.
T Consensus 394 ll~~~~~yvvqE~~vvi~dilRkyP~~~-~~-----vv~~l~~~~~sl~e-peak~amiWilg~y~~ 453 (734)
T KOG1061|consen 394 LLETKVDYVVQEAIVVIRDILRKYPNKY-ES-----VVAILCENLDSLQE-PEAKAALIWILGEYAE 453 (734)
T ss_pred HHhhcccceeeehhHHHHhhhhcCCCch-hh-----hhhhhcccccccCC-hHHHHHHHHHHhhhhh
Confidence 9998877777777778887764443321 12 33444444444444 4666667778886654
No 147
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.64 E-value=1.9 Score=51.40 Aligned_cols=543 Identities=15% Similarity=0.105 Sum_probs=276.5
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhh
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCK 275 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 275 (859)
++|.+-+.+ .... ++...++.-++++......++.. .-..+.+-.+.......+++.++..|...+..-....
T Consensus 122 lipf~~e~~-~~~d----ev~~~~a~~~~~~~~~v~~~~~~--~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~ 194 (759)
T KOG0211|consen 122 LIPFLTEAE-DDED----EVLLDLAEQLGTFLPDVGGPEYA--HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEK 194 (759)
T ss_pred hhhHHHHhc-cchh----HHHHHHHHHhcccchhccchhHH--HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 456666666 3333 67777777777766552222211 1123333333334445567777777776654321111
Q ss_pred HhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh-ccCChHHHHHHHHHHHHhcCC
Q 002999 276 SVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL-CQGSDNVQIEMAFLVGKLTLT 354 (859)
Q Consensus 276 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL-~~~~~~~~~~aa~~L~~la~~ 354 (859)
.. .-.++.+.++.. .+--..+..++.+...+...-.. ..++.. +.++..-+ ++..+.++..++.-+++++..
T Consensus 195 ~~---~~lv~l~~~l~~-~d~~~sr~sacglf~~~~~~~~~--~~vk~e-lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~ 267 (759)
T KOG0211|consen 195 LR---EHLVPLLKRLAT-GDWFQSRLSACGLFGKLYVSLPD--DAVKRE-LRPIVQSLCQDDTPMVRRAVASNLGNIAKV 267 (759)
T ss_pred HH---HHHHHHHHHccc-hhhhhcchhhhhhhHHhccCCCh--HHHHHH-HHHHHHhhccccchhhHHHHHhhhHHHHHH
Confidence 10 112333333332 21112234455555555432111 112222 22333333 566777888888777777653
Q ss_pred CccHHHHHHhh-HHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002999 355 NSCKEHIARQC-AKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIA 431 (859)
Q Consensus 355 ~~~~~~i~~~g-i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~ 431 (859)
-.. .....+ .+.++++.. ...++..|...+.++...-..... ...-..+.++.... +....++........
T Consensus 268 ~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d-~~~~~~~~l~~~~~---d~~~~v~~~~~~~~~ 341 (759)
T KOG0211|consen 268 LES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD-VVKSLTESLVQAVE---DGSWRVSYMVADKFS 341 (759)
T ss_pred HHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHhc---ChhHHHHHHHhhhhh
Confidence 333 233334 477778887 667888888888777654322211 11234566666663 355666666666655
Q ss_pred HhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhc
Q 002999 432 NVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLE 511 (859)
Q Consensus 432 nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 511 (859)
-|...-+. ......-+++...+++....+.+...+.-...++..-.. .....+.....++.+-.+..
T Consensus 342 ~L~~~~~~-----------~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~--~~~~~i~~~~ilp~~~~lv~ 408 (759)
T KOG0211|consen 342 ELSSAVGP-----------SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA--SCYPNIPDSSILPEVQVLVL 408 (759)
T ss_pred hHHHHhcc-----------ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc--ccccccchhhhhHHHHHHHh
Confidence 55443222 122334466777777665555555554444444332110 00122334445788888888
Q ss_pred CCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHHhccHH
Q 002999 512 HPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLEATFIK 590 (859)
Q Consensus 512 ~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~g~v~ 590 (859)
+.+..++...+.-...++.-.+.+ .-.. -..+.+...+++... .++..-...++.+-..+... ........+|
T Consensus 409 d~~~~vr~a~a~~~~~~~p~~~k~---~ti~-~llp~~~~~l~de~~--~V~lnli~~ls~~~~v~~v~g~~~~s~slLp 482 (759)
T KOG0211|consen 409 DNALHVRSALASVITGLSPILPKE---RTIS-ELLPLLIGNLKDEDP--IVRLNLIDKLSLLEEVNDVIGISTVSNSLLP 482 (759)
T ss_pred cccchHHHHHhccccccCccCCcC---cCcc-ccChhhhhhcchhhH--HHHHhhHHHHHHHHhccCcccchhhhhhhhh
Confidence 888888877666665554222210 0111 345666666666665 66666555554443322221 2222333333
Q ss_pred HHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhh
Q 002999 591 WIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLS 670 (859)
Q Consensus 591 ~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 670 (859)
.+..+-.... ..+...+...+-.++.. .-. .+.+...-+.+..-|.+. ...+++.|+..+.-++
T Consensus 483 ~i~el~~d~~-----------wRvr~ail~~ip~la~q---~~~-~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~ 546 (759)
T KOG0211|consen 483 AIVELAEDLL-----------WRVRLAILEYIPQLALQ---LGV-EFFDEKLAELLRTWLPDH-VYSIREAAARNLPALV 546 (759)
T ss_pred hhhhhccchh-----------HHHHHHHHHHHHHHHHh---hhh-HHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHH
Confidence 3333322110 00111111111111100 000 011111122222223332 4578888887777665
Q ss_pred hhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHH
Q 002999 671 EAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEAL 750 (859)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 750 (859)
..-.. .|. ...-|+.+......++.-.+...+.++
T Consensus 547 ~~~G~-----~w~----------------------------------------~~~~i~k~L~~~~q~~y~~R~t~l~si 581 (759)
T KOG0211|consen 547 ETFGS-----EWA----------------------------------------RLEEIPKLLAMDLQDNYLVRMTTLFSI 581 (759)
T ss_pred HHhCc-----chh----------------------------------------HHHhhHHHHHHhcCcccchhhHHHHHH
Confidence 43110 000 112355566665566788888888888
Q ss_pred HhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcCChh
Q 002999 751 STLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNAN 830 (859)
Q Consensus 751 ~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~ 830 (859)
..|+.- .-..|....=++.+.++.. ++.+++|-+++..|.++...-.. -..+..+.+.+..+.++.|..
T Consensus 582 ~~la~v-------~g~ei~~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~~~L~~---~~~~~~v~pll~~L~~d~~~d 650 (759)
T KOG0211|consen 582 HELAEV-------LGQEITCEDLLPVFLDLVK-DPVANVRINVAKHLPKILKLLDE---SVRDEEVLPLLETLSSDQELD 650 (759)
T ss_pred HHHHHH-------hccHHHHHHHhHHHHHhcc-CCchhhhhhHHHHHHHHHhhcch---HHHHHHHHHHHHHhccCcccc
Confidence 877743 1233455567788888877 58899999999999999863211 112334446778888888899
Q ss_pred hHHHHHHHHHHHhhhcCCc
Q 002999 831 AKRHAQEALTNLKQISGLS 849 (859)
Q Consensus 831 ~~~~A~~~L~~L~~~~~~~ 849 (859)
+|..|..++..+....-++
T Consensus 651 vr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 651 VRYRAILAFGSIELSRLES 669 (759)
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 9999988888766554333
No 148
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0013 Score=71.60 Aligned_cols=68 Identities=19% Similarity=0.395 Sum_probs=53.9
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC-----CCcchhhhHhHHHHHHHhc
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL-----ELKPNIGLAGAIEEWVNRN 148 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~-----~l~pn~~l~~~I~~w~~~~ 148 (859)
.+|.|-||...+.+||++||||+||+.||.+.+.. ...||.|+.++.+. ...+|..+...|..|+..-
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~------~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ------ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhcc------CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 56999999999999999999999999999997775 78999998887641 2234555566666666543
No 149
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.61 E-value=0.0012 Score=65.57 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=48.1
Q ss_pred cccCcccccccCCCee-cCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcc----cCCCCCcchhhhHhHHHHH
Q 002999 76 NFLCPLTKQVMKEPVV-LESAQAYERKAIEYWFERCLEDGRDPTCPVTGQV----LKSLELKPNIGLAGAIEEW 144 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~-~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~----l~~~~l~pn~~l~~~I~~w 144 (859)
+++|||+......||+ ..|||.|+|..|+..+.- .....||+.+-. +....+.+...++..|++-
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~----~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~~ 245 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCD----EITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQS 245 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhcc----CceeecccccCCccccccccccCchHHHHHHHHHh
Confidence 4899999999999996 499999999999999965 224679997643 2334555555566555543
No 150
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.032 Score=61.17 Aligned_cols=186 Identities=16% Similarity=0.113 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccch
Q 002999 379 RAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESI 457 (859)
Q Consensus 379 ~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~ 457 (859)
-.+++.+|..++.+- --|.-+.+..++++|+++|.. ++.-+.-.+...++|+...-++... -+.+.++
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~---Peimi~~~~t~~icn~vv~fsnL~~--------~fL~~~i 474 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN---PEIMIEFPDTIDICNKVVPFSNLGA--------GFLEKSI 474 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC---ccceeeccchhhhhheeeeccchHH--------HHHHhhH
Confidence 344566666666654 456777888999999999954 4555666677888888776655443 4778899
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc---H
Q 002999 458 VSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIG---Q 534 (859)
Q Consensus 458 i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~---~ 534 (859)
|..|+.++.+.+..+|.+..|+|.++-.+....+. -......|+..++++.++++-.++......|+|++ +.. +
T Consensus 475 Idvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek--f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft-c~~~knE 551 (743)
T COG5369 475 IDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK--FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT-CDTSKNE 551 (743)
T ss_pred HHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh--hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc-ccccccc
Confidence 99999999998999999999999999776543222 22334568999999999999999999999999998 322 1
Q ss_pred HHHHhcCCC---C-chHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH
Q 002999 535 DLAYALKPF---D-KLVLFKDKILDNQSANCERSDAACILANIQLSEEEV 580 (859)
Q Consensus 535 ~~~~~l~~~---g-~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 580 (859)
...+.+.+. . ..+.|+..++..++ -.....+.+|-+++..+...
T Consensus 552 kskdv~~K~~p~~ylfk~l~~k~e~~np--~~i~~~~yilv~~aa~d~~l 599 (743)
T COG5369 552 KSKDVFIKATPRRYLFKRLIDKYEENNP--MEILEGCYILVRNAACDDTL 599 (743)
T ss_pred ccceeEEecChHHHHHHHHHHHHHhcCc--hhhhhhHHHHHHHHhccchH
Confidence 122222222 2 45678888888887 34455688888887766665
No 151
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=2.3 Score=49.53 Aligned_cols=282 Identities=14% Similarity=0.086 Sum_probs=147.2
Q ss_pred HHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccc
Q 002999 367 KVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELAS 444 (859)
Q Consensus 367 ~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 444 (859)
+.+=.+|+ +..+...|++++.+|.... ...+.. ++..|--++.+ +...+|-.|..+|..++...+.....
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l~p--avs~Lq~flss---p~~~lRfaAvRtLnkvAm~~P~~v~~- 319 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTN--SRELAP--AVSVLQLFLSS---PKVALRFAAVRTLNKVAMKHPQAVTV- 319 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhcch--HHHHHHHHhcC---cHHHHHHHHHHHHHHHHHhCCccccc-
Confidence 33444555 6667778888888886543 111111 55666666644 55788999999999988765543321
Q ss_pred cccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHH
Q 002999 445 ADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRL 524 (859)
Q Consensus 445 ~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~ 524 (859)
.. ..|-.++++.+-.+-..|..+|..=... .+ +...+ .-+..++.=+.++..-+...|.++
T Consensus 320 ---------cN---~elE~lItd~NrsIat~AITtLLKTG~e-~s---v~rLm---~qI~~fv~disDeFKivvvdai~s 380 (865)
T KOG1078|consen 320 ---------CN---LDLESLITDSNRSIATLAITTLLKTGTE-SS---VDRLM---KQISSFVSDISDEFKIVVVDAIRS 380 (865)
T ss_pred ---------cc---hhHHhhhcccccchhHHHHHHHHHhcch-hH---HHHHH---HHHHHHHHhccccceEEeHHHHHH
Confidence 01 1122333333323333333333332221 11 11111 123334443444444455666666
Q ss_pred HHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhccccc
Q 002999 525 TRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFN 604 (859)
Q Consensus 525 L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~ 604 (859)
|+.... . ...+.+..|-++|+++.. -+.+.+..-++..+...++.. ...++..|+..+.++....
T Consensus 381 Lc~~fp---~------k~~~~m~FL~~~Lr~eGg-~e~K~aivd~Ii~iie~~pds----Ke~~L~~LCefIEDce~~~- 445 (865)
T KOG1078|consen 381 LCLKFP---R------KHTVMMNFLSNMLREEGG-FEFKRAIVDAIIDIIEENPDS----KERGLEHLCEFIEDCEFTQ- 445 (865)
T ss_pred HHhhcc---H------HHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHhCcch----hhHHHHHHHHHHHhccchH-
Confidence 665531 1 112456667777777544 356666666666655544332 2344566666666643211
Q ss_pred CCCCCCcchhHHhhhhhhhh-cccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCC
Q 002999 605 TRSSRPISNIAEGLLGLLLH-FTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGS 683 (859)
Q Consensus 605 ~r~~~~~~~~~e~~~~~L~~-~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~ 683 (859)
+.-..+..|.. .....+|. ..|.-....+.-. +..+|..|..+|.+++.+.+.+.
T Consensus 446 ---------i~~rILhlLG~EgP~a~~Ps--------kyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~------ 501 (865)
T KOG1078|consen 446 ---------IAVRILHLLGKEGPKAPNPS--------KYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL------ 501 (865)
T ss_pred ---------HHHHHHHHHhccCCCCCCcc--------hhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc------
Confidence 11111222211 01112222 1122222333334 78999999999999874322110
Q ss_pred CCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhh
Q 002999 684 PTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLII 755 (859)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 755 (859)
....-.|..++.+.|.+|++.|..+|..+..
T Consensus 502 -----------------------------------------~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 502 -----------------------------------------PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred -----------------------------------------ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 1135578889999999999999999999883
No 152
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0013 Score=66.36 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=43.6
Q ss_pred cccCCCCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 67 EDCHILPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 67 ~~~~~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
|.+.+| |.|-||.+-+.+||++.|||+||..|-.+.+.. ...|++|.++.
T Consensus 236 D~~~~P----f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk------~~~c~vC~~~t 285 (313)
T KOG1813|consen 236 DIELLP----FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK------GEKCYVCSQQT 285 (313)
T ss_pred CcccCC----ccccccccccccchhhcCCceeehhhhcccccc------CCcceeccccc
Confidence 445555 999999999999999999999999998888876 58999998765
No 153
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.19 Score=57.54 Aligned_cols=320 Identities=15% Similarity=0.159 Sum_probs=172.8
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhh
Q 002999 202 KLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEK 281 (859)
Q Consensus 202 ~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~ 281 (859)
+=|++++. .+|-..++.|+.|-.. + +. ...+|.+...|.+.+.-+|++|.-++..+-...+ .+. +
T Consensus 106 kDLQHPNE----yiRG~TLRFLckLkE~-E----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--p 170 (948)
T KOG1058|consen 106 KDLQHPNE----YIRGSTLRFLCKLKEP-E----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--P 170 (948)
T ss_pred hhccCchH----hhcchhhhhhhhcCcH-H----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--C
Confidence 33455666 8888888888887332 1 11 2457888888889999999999988887755411 111 2
Q ss_pred ChHHHHHHhhcCCCChHHHHHHHHHHHHh---------c----CCC----cChHHHH-------------hcCChHHHHH
Q 002999 282 GALVLLSSMTGNLELPALSNLADEVFKKM---------E----RIE----EIVQPLA-------------AAGRFEPLIN 331 (859)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL---------~----~~~----~~~~~i~-------------~~G~i~~Lv~ 331 (859)
.+-+.+-+.|....|+..+.+|...|... . +.+ .-+..++ +.-.|.-+..
T Consensus 171 DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~ 250 (948)
T KOG1058|consen 171 DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYN 250 (948)
T ss_pred ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHH
Confidence 33344444454356666666665444332 1 111 0011111 1224455555
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCC-cch-HHHH-----H---
Q 002999 332 RLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLD-DNA-TILV-----D--- 401 (859)
Q Consensus 332 lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~-~~~-~~i~-----~--- 401 (859)
+|.+.++.+..++|.+|.+|+. +|...+.|+.++..|.... +|. +.|+ +
T Consensus 251 lL~stssaV~fEaa~tlv~lS~---------------------~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~ 309 (948)
T KOG1058|consen 251 LLSSTSSAVIFEAAGTLVTLSN---------------------DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA 309 (948)
T ss_pred HHhcCCchhhhhhcceEEEccC---------------------CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence 6666666666666666555554 4444455555555544332 222 1111 0
Q ss_pred ------cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhc-----C---
Q 002999 402 ------SALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLS-----G--- 467 (859)
Q Consensus 402 ------~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~-----~--- 467 (859)
.|.+--++++|. .++.+++.+++.+..-|+.+-. +..++.+|+ .
T Consensus 310 ~~~~il~~l~mDvLrvLs---s~dldvr~Ktldi~ldLvssrN-------------------vediv~~Lkke~~kT~~~ 367 (948)
T KOG1058|consen 310 LHEKILQGLIMDVLRVLS---SPDLDVRSKTLDIALDLVSSRN-------------------VEDIVQFLKKEVMKTHNE 367 (948)
T ss_pred hhHHHHHHHHHHHHHHcC---cccccHHHHHHHHHHhhhhhcc-------------------HHHHHHHHHHHHHhcccc
Confidence 122333344443 3667888888888777765431 222333331 1
Q ss_pred ---CChHHHHHHHHHHHHhccC-ChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCC
Q 002999 468 ---VSPQCQVSTLRILCGIASS-PQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPF 543 (859)
Q Consensus 468 ---~~~~~~~~a~~aL~~La~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~ 543 (859)
.+...+.-.+.++..++.. +.... ..++.|+.++.+.++..-...+..++...... +..+ .
T Consensus 368 e~d~~~~yRqlLiktih~cav~Fp~~aa---------tvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~Lr-----~ 432 (948)
T KOG1058|consen 368 ESDDNGKYRQLLIKTIHACAVKFPEVAA---------TVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNLR-----A 432 (948)
T ss_pred ccccchHHHHHHHHHHHHHhhcChHHHH---------HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chHH-----H
Confidence 1225677788888888776 32211 24789999999888865444444443333111 1121 1
Q ss_pred CchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH---HHHHH--hccHHHHHHH
Q 002999 544 DKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV---KTLLE--ATFIKWIVIT 595 (859)
Q Consensus 544 g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~---~~l~~--~g~v~~L~~l 595 (859)
..++.|+.-+..-.+ .+.-..|+|+++.-+....++ -.+++ .|-+|.+..=
T Consensus 433 ~ii~~l~~~~~~irS-~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~se 488 (948)
T KOG1058|consen 433 SIIEKLLETFPQIRS-SKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVCSE 488 (948)
T ss_pred HHHHHHHHhhhhhcc-cccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccceehHH
Confidence 345666665544433 255678999999887766544 12222 4656654433
No 154
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.47 E-value=1.1 Score=53.29 Aligned_cols=481 Identities=12% Similarity=0.131 Sum_probs=253.5
Q ss_pred HHHHHHHHHHHhcccC-cc--hHHHHHhhCchHHHHHHhcCC-CHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHH
Q 002999 214 ILRSKALMALLSMAKD-EE--SKKIMLEEGVTKSVIHSLIGN-SEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSS 289 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~-~~--~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 289 (859)
.++.+++..|...+.. +. ++..+ + +++..|..+ -...+..++.+...+...-.. ..+- .. +..+++
T Consensus 174 ~vr~k~ve~l~~v~~~~~~~~~~~~l-----v-~l~~~l~~~d~~~sr~sacglf~~~~~~~~~-~~vk--~e-lr~~~~ 243 (759)
T KOG0211|consen 174 GVREKAVESLLKVAVGLPKEKLREHL-----V-PLLKRLATGDWFQSRLSACGLFGKLYVSLPD-DAVK--RE-LRPIVQ 243 (759)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHH-----H-HHHHHccchhhhhcchhhhhhhHHhccCCCh-HHHH--HH-HHHHHH
Confidence 6788888888777654 21 22221 2 233333332 223455666666666554221 1111 11 223333
Q ss_pred hhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHH
Q 002999 290 MTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVL 369 (859)
Q Consensus 290 lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~L 369 (859)
-+....++.++..++.-+.+++..-.. .....+.++.++.+..+..+.++..|...+.++...-+...-......+.+
T Consensus 244 ~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l 321 (759)
T KOG0211|consen 244 SLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESL 321 (759)
T ss_pred hhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHH
Confidence 333267778888888888888754332 677788999999999998899999888887776542222113444555777
Q ss_pred HHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCC--ccccccc
Q 002999 370 VELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPG--CWELASA 445 (859)
Q Consensus 370 v~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~~ 445 (859)
++... +..++.......+.|+..-.. ....---+++...++.. .....+...+.-..-++.... .+.
T Consensus 322 ~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~---~~~e~r~a~a~~~~~l~~~l~~~~~~---- 392 (759)
T KOG0211|consen 322 VQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKD---EEWEVRYAIAKKVQKLACYLNASCYP---- 392 (759)
T ss_pred HHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcc---hhhhhhHHhhcchHHHhhhcCccccc----
Confidence 77777 445555555555555432111 11112335566666643 223334333333333332221 111
Q ss_pred ccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHH
Q 002999 446 DKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASS-PQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRL 524 (859)
Q Consensus 446 ~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~ 524 (859)
.+.....++.+-.++.+.++.++...+....++.-- +.. .. + .--.+.++..++...+.++.+-.+.
T Consensus 393 -----~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~t----i--~~llp~~~~~l~de~~~V~lnli~~ 460 (759)
T KOG0211|consen 393 -----NIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE-RT----I--SELLPLLIGNLKDEDPIVRLNLIDK 460 (759)
T ss_pred -----ccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC-cC----c--cccChhhhhhcchhhHHHHHhhHHH
Confidence 233344566666666677777777666665555322 110 00 0 1235666667788888898877765
Q ss_pred HHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhccccc
Q 002999 525 TRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFN 604 (859)
Q Consensus 525 L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~ 604 (859)
+..+- ..++...-.......++.++.+-....- .++.+....+-.++.... ..+.... +..++....
T Consensus 461 ls~~~-~v~~v~g~~~~s~slLp~i~el~~d~~w--Rvr~ail~~ip~la~q~~--~~~~~~~----~~~l~~~~l---- 527 (759)
T KOG0211|consen 461 LSLLE-EVNDVIGISTVSNSLLPAIVELAEDLLW--RVRLAILEYIPQLALQLG--VEFFDEK----LAELLRTWL---- 527 (759)
T ss_pred HHHHH-hccCcccchhhhhhhhhhhhhhccchhH--HHHHHHHHHHHHHHHhhh--hHHhhHH----HHHHHHhhh----
Confidence 54442 1111111112222456666666555432 455544444444443211 0111100 111111100
Q ss_pred CCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCC
Q 002999 605 TRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSP 684 (859)
Q Consensus 605 ~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~ 684 (859)
++ +...+.++++..+..++.....++. .+..+|.+......+ +...|...+.++.-|+.--
T Consensus 528 --~d-~v~~Ir~~aa~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~----------- 588 (759)
T KOG0211|consen 528 --PD-HVYSIREAAARNLPALVETFGSEWA----RLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVL----------- 588 (759)
T ss_pred --hh-hHHHHHHHHHHHhHHHHHHhCcchh----HHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHh-----------
Confidence 00 1112445555555555433112222 233467666666553 6777777777777554310
Q ss_pred CCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhH
Q 002999 685 TPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRG 764 (859)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~ 764 (859)
+ .. +.....++++.++..++.++|+..++..|..+..- ..
T Consensus 589 --------------------------g-----~e---i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~----L~-- 628 (759)
T KOG0211|consen 589 --------------------------G-----QE---ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL----LD-- 628 (759)
T ss_pred --------------------------c-----cH---HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh----cc--
Confidence 0 00 12345688888999999999999999999988853 10
Q ss_pred HHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHH
Q 002999 765 VDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVL 801 (859)
Q Consensus 765 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~ 801 (859)
....+ +-|.++.+.|.+..+.+.+-.|..+++.+-
T Consensus 629 -~~~~~-~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 629 -ESVRD-EEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred -hHHHH-HHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 11122 455565566655577888888887777665
No 155
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.14 Score=57.81 Aligned_cols=266 Identities=14% Similarity=0.130 Sum_probs=164.8
Q ss_pred ChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC---C---
Q 002999 282 GALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT---N--- 355 (859)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~---~--- 355 (859)
++..-|+.+.. +.|..++..|++.|..|+..-+--+. .....+++|.+..++++..|...++-.+.- +
T Consensus 198 ~~~~~l~~~~~-~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEH-DQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhc-CCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34444677766 88999999999999888763222222 244578899999999999987765444321 1
Q ss_pred -ccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHH-HHHHHHHH
Q 002999 356 -SCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELK-ELAAATIA 431 (859)
Q Consensus 356 -~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~-~~a~~~L~ 431 (859)
.+...+...+...+-..++ +-.++-.|+++|..+-... ..++..-.=..++.-++. .... +.......
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS---ee~i~QTLdKKlms~lRR-----kr~ahkrpk~l~s 343 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS---EEIIQQTLDKKLMSRLRR-----KRTAHKRPKALYS 343 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH---HHHHHHHHHHHHhhhhhh-----hhhcccchHHHHh
Confidence 2233445556677777777 6677777888777664322 112211111222222221 1111 11112222
Q ss_pred HhhcCCCc--c-ccc---ccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHH
Q 002999 432 NVVSNPGC--W-ELA---SADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKY 505 (859)
Q Consensus 432 nL~~~~~~--~-~~~---~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~ 505 (859)
+. ..+.+ | ... ..+.+...++..|+-..+++-|.+.--+++..|...++.|+.+.... . . ..+..
T Consensus 344 ~G-ewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F-A-~------~aldf 414 (823)
T KOG2259|consen 344 SG-EWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF-A-V------RALDF 414 (823)
T ss_pred cC-CcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc-H-H------HHHHH
Confidence 11 11111 1 111 12233345677787788888777766799999999999999864321 1 1 25789
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHH
Q 002999 506 IIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEE 579 (859)
Q Consensus 506 Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~ 579 (859)
|++++++....+|..|..+|..++.+ -.|.+ ..++.+...|.+.+. +++.+.--+|++.-..+..
T Consensus 415 LvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~e-eql~~il~~L~D~s~--dvRe~l~elL~~~~~~d~~ 479 (823)
T KOG2259|consen 415 LVDMFNDEIEVVRLKAIFALTMISVH------LAIRE-EQLRQILESLEDRSV--DVREALRELLKNARVSDLE 479 (823)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHH------heecH-HHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999999999732 12333 677888888888776 7888777777776554444
No 156
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.46 E-value=0.71 Score=51.47 Aligned_cols=324 Identities=14% Similarity=0.083 Sum_probs=165.8
Q ss_pred HHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCC
Q 002999 174 LDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNS 253 (859)
Q Consensus 174 l~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~ 253 (859)
.+..-.+.++++..+.+++ |.|-.-|++... -+...+++.++.++...- -...+ ..++..|-.+|++..
T Consensus 248 vr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~e----mV~lE~Ar~v~~~~~~nv-~~~~~-~~~vs~L~~fL~s~r 316 (898)
T COG5240 248 VRATVELLKENSQALLQLR-----PFLNSWLSDKFE----MVFLEAARAVCALSEENV-GSQFV-DQTVSSLRTFLKSTR 316 (898)
T ss_pred HHHHHHHHHhChHHHHHHH-----HHHHHHhcCcch----hhhHHHHHHHHHHHHhcc-CHHHH-HHHHHHHHHHHhcch
Confidence 3444455555554444433 455555555444 788888888888765421 11111 234777888888988
Q ss_pred HHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh
Q 002999 254 EKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL 333 (859)
Q Consensus 254 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL 333 (859)
...|-.|.++|..|+.....+-..+ =+.+-.++. +.+..+...|...|..- ..+++...++. .|+.+ +
T Consensus 317 v~~rFsA~Riln~lam~~P~kv~vc-----N~evEsLIs-d~Nr~IstyAITtLLKT-Gt~e~idrLv~--~I~sf---v 384 (898)
T COG5240 317 VVLRFSAMRILNQLAMKYPQKVSVC-----NKEVESLIS-DENRTISTYAITTLLKT-GTEETIDRLVN--LIPSF---V 384 (898)
T ss_pred HHHHHHHHHHHHHHHhhCCceeeec-----ChhHHHHhh-cccccchHHHHHHHHHc-CchhhHHHHHH--HHHHH---H
Confidence 8899999999999998754432222 123333444 45555555555544332 23444444332 23333 3
Q ss_pred ccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHH
Q 002999 334 CQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRAASLKALYNLSGLD-DNATILVDSALLPALT 409 (859)
Q Consensus 334 ~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv 409 (859)
.+-++.-+.-+..++..|+..-+.+..- -+..|...|. ..+.+..+..+|...-... +.++.+ +..|.
T Consensus 385 hD~SD~FKiI~ida~rsLsl~Fp~k~~s---~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC 456 (898)
T COG5240 385 HDMSDGFKIIAIDALRSLSLLFPSKKLS---YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLC 456 (898)
T ss_pred HhhccCceEEeHHHHHHHHhhCcHHHHH---HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHH
Confidence 3333444444555555555544332211 0122222222 4455566665555554443 334332 34455
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChh
Q 002999 410 DILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQA 489 (859)
Q Consensus 410 ~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~ 489 (859)
.++.. + +.-+-+..+|.-|-...+ +... -...|..+..-+--.+.-++..|+.+|..++-+...
T Consensus 457 ~fIED---c--ey~~I~vrIL~iLG~EgP-~a~~----------P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d 520 (898)
T COG5240 457 TFIED---C--EYHQITVRILGILGREGP-RAKT----------PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD 520 (898)
T ss_pred HHHhh---c--chhHHHHHHHHHhcccCC-CCCC----------cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc
Confidence 55532 1 122334444443322221 1110 011233333322234556788889999887765322
Q ss_pred HHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCC---CchHHHHHhh
Q 002999 490 AESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPF---DKLVLFKDKI 553 (859)
Q Consensus 490 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~---g~i~~Lv~lL 553 (859)
.. ..+ .....|-+.+++.+.++|..|..+|.++- ..+. ...+.++ |-||.|..-+
T Consensus 521 ~~-~~~-----sv~~~lkRclnD~DdeVRdrAsf~l~~~~--~~da-~~pl~~sd~~~dipsle~~l 578 (898)
T COG5240 521 VV-SPQ-----SVENALKRCLNDQDDEVRDRASFLLRNMR--LSDA-CEPLFSSDELGDIPSLELEL 578 (898)
T ss_pred cc-cHH-----HHHHHHHHHhhcccHHHHHHHHHHHHhhh--hhhh-hhccccccccCCcchhHHhh
Confidence 10 011 12456667889999999999999999994 2222 2334433 4555555433
No 157
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.44 E-value=0.059 Score=55.36 Aligned_cols=173 Identities=20% Similarity=0.138 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcccCc---chHHHHHh--hCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHH
Q 002999 214 ILRSKALMALLSMAKDE---ESKKIMLE--EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLS 288 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~---~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv 288 (859)
+.|..|+..|..+.... +....+.+ ...+..++..+.+....+...|+.++..++..-...-.-. ....+|.|+
T Consensus 22 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll 100 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHH
Confidence 67777887777776542 22333322 1455677777777667788899999999886532221111 144889999
Q ss_pred HhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCc-cHHHH-----H
Q 002999 289 SMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNS-CKEHI-----A 362 (859)
Q Consensus 289 ~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~-~~~~i-----~ 362 (859)
+.+. +....++..|..+|..++..-.....+ .++.+...+.+.++.++..++..|..+..... ....+ .
T Consensus 101 ~~~~-~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 101 KKLG-DSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HGGG----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHc-cccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 9998 677888999999999998654311111 14556667788999999999999988866444 11111 2
Q ss_pred HhhHHHHHHHhC--ChhHHHHHHHHHHHhhCC
Q 002999 363 RQCAKVLVELLS--KPAGRAASLKALYNLSGL 392 (859)
Q Consensus 363 ~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~ 392 (859)
..-.+.+..++. ++++++.|-.+++.+...
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 334577778887 899999999999999654
No 158
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.38 E-value=0.29 Score=48.92 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=111.1
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCc-chHHHHHHHHHHHhcccC--cchHHHHHhhCchHH
Q 002999 168 DGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSV-GTILRSKALMALLSMAKD--EESKKIMLEEGVTKS 244 (859)
Q Consensus 168 ~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~-~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~ 244 (859)
.++..|+..|+..+. +++-|..+.++..--.|-.+|...+.+. -...|..++++++.|..+ .+.-..+...+.||.
T Consensus 94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 455568998988876 6777888888776555667775543321 227899999999999987 344566778999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccChhhh-------hHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh
Q 002999 245 VIHSLIGNSEKEKEYAVKLLLEFCIDEAYC-------KSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV 317 (859)
Q Consensus 245 Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-------~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~ 317 (859)
.++.+..|+...+..|+.++..+-.++.-- +++....-.+..++.-|.+.+++.+.+.+.++..+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999887776322 2222112233344443334788889999999999999888766
Q ss_pred HHHHh
Q 002999 318 QPLAA 322 (859)
Q Consensus 318 ~~i~~ 322 (859)
..+..
T Consensus 253 ~aL~~ 257 (293)
T KOG3036|consen 253 AALRS 257 (293)
T ss_pred HHHHh
Confidence 65543
No 159
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.31 E-value=0.54 Score=51.29 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=74.0
Q ss_pred CChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcccccccccc-chhh
Q 002999 738 EDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSL-NQSL 816 (859)
Q Consensus 738 ~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~-~~~~ 816 (859)
.+..|+..|..||.|+++--+.-.+-+...+.+ |.+..+...........+|=+|..++.++|+++...-+-.. ...+
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~ 574 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQA 574 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHH
Confidence 567999999999999997401000122233333 44444333322246788899999999999988754222111 1223
Q ss_pred HHHHHHHh-hcCChhhHHHHHHHHHHHhhhcCCcCccc
Q 002999 817 VRALVEAF-KHGNANAKRHAQEALTNLKQISGLSGKAS 853 (859)
Q Consensus 817 ~~~Lv~ll-~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 853 (859)
.+.|..++ ++.|..+|..|+.+|..-..-.+++..|+
T Consensus 575 F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~ 612 (728)
T KOG4535|consen 575 FNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYA 612 (728)
T ss_pred HHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHh
Confidence 34555544 56779999999999998888777777665
No 160
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.26 E-value=0.0024 Score=68.87 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=49.2
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP 133 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p 133 (859)
.+..|-+|.+.-+||+...|.|+|||-||.++...+.++. +.+||+|..+|+-+.-.|
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~-nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENN-NVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhccc-CCCCccccccccccccch
Confidence 4578999999999999999999999999999999876555 589999988886554333
No 161
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.0028 Score=61.88 Aligned_cols=53 Identities=23% Similarity=0.481 Sum_probs=46.4
Q ss_pred CcccCcccccccCCCe----ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc
Q 002999 75 KNFLCPLTKQVMKEPV----VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP 133 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv----~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p 133 (859)
..|.||+|.+.+.+.+ +-+|||.++..|.|+.+.. +..||+|..+|++.++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~------D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK------DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc------cccccCCCCcCcccceEe
Confidence 4588999999999843 4499999999999999975 789999999999999886
No 162
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.22 E-value=0.27 Score=59.40 Aligned_cols=263 Identities=17% Similarity=0.132 Sum_probs=160.7
Q ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC----CcC
Q 002999 242 TKSVIHSLIG-NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI----EEI 316 (859)
Q Consensus 242 i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~----~~~ 316 (859)
++.+...++. .....+..|+.+|..|+..-..-.++ ..++|.++.++. .....++..|+.+|..+-.. +.+
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L---DRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL---DRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH---hhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3444444443 24567889999999998753322233 348999999999 77889999999888877532 222
Q ss_pred hHHHHhcCChHHHHHHhcc-CChHHHHHHHHHHHHhcCC------------------CccH-HHH----------HHhhH
Q 002999 317 VQPLAAAGRFEPLINRLCQ-GSDNVQIEMAFLVGKLTLT------------------NSCK-EHI----------ARQCA 366 (859)
Q Consensus 317 ~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~la~~------------------~~~~-~~i----------~~~gi 366 (859)
-..+.-.=.+|.|-.++.+ ....++..-|..|+.||.. +.+- ... -..++
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 2334444456666666666 5566777777777766541 1111 000 01223
Q ss_pred -HHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccc
Q 002999 367 -KVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWEL 442 (859)
Q Consensus 367 -~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 442 (859)
...+.+|. ++-++++-+..|.-||..- ..+ -..=+++.|+.+|. +.++.++-.=...|.-++..- +|
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLN---DkDw~LR~aFfdsI~gvsi~V-G~-- 650 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLN---DKDWRLRGAFFDSIVGVSIFV-GW-- 650 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhc---CccHHHHHHHHhhccceEEEE-ee--
Confidence 23334555 4456666666777776432 111 00124677888884 345666644333333222221 11
Q ss_pred cccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHH
Q 002999 443 ASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAF 522 (859)
Q Consensus 443 ~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 522 (859)
.-.+++.+|.|.+-|.++.+-+..+++++|..|+....-.+.... ..++....+|-+++.=+|..++
T Consensus 651 --------rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-----~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 651 --------RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-----DILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred --------eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-----HHHHhhhhheeCchHHHHHHHH
Confidence 124677888888889999999999999999999886432111112 1345666788899999999999
Q ss_pred HHHHHHhh
Q 002999 523 RLTRILSE 530 (859)
Q Consensus 523 ~~L~~Ls~ 530 (859)
..+...+.
T Consensus 718 ~iI~~~~~ 725 (1431)
T KOG1240|consen 718 GIIAAIAR 725 (1431)
T ss_pred HHHHHHHh
Confidence 98888764
No 163
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0026 Score=73.04 Aligned_cols=52 Identities=12% Similarity=0.379 Sum_probs=46.4
Q ss_pred ccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc
Q 002999 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP 133 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p 133 (859)
++||.|.+=.+|-|++.|||.||-.||+.-... . ...||.|+..+...|+.|
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et----R-qRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYET----R-QRKCPKCNAAFGANDVHR 695 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHH----h-cCCCCCCCCCCCcccccc
Confidence 789999999999999999999999999999987 2 679999999987766654
No 164
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.16 E-value=0.2 Score=47.28 Aligned_cols=129 Identities=14% Similarity=0.194 Sum_probs=99.8
Q ss_pred HHHHHcCcHHHHHHHHhccCC---CCHHHHHHHHHHHHHhhcCCC-cccccccccccCcccccchHHHHHHhhcCC--Ch
Q 002999 397 TILVDSALLPALTDILFKSHD---ASPELKELAAATIANVVSNPG-CWELASADKLGHSMQSESIVSSLLGLLSGV--SP 470 (859)
Q Consensus 397 ~~i~~~G~i~~Lv~lL~~~~~---~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~--~~ 470 (859)
..++..||+..|++++.+... ....+...++.++..|-.++. +|. ..+..+|.+++..++.. ++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd----------~l~~~FI~Kia~~Vn~~~~d~ 74 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD----------TLSDSFIKKIASYVNSSAMDA 74 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh----------hccHHHHHHHHHHHccccccc
Confidence 456788999999999987432 134677888999999988875 665 45788999999988755 46
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHH
Q 002999 471 QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAY 538 (859)
Q Consensus 471 ~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~ 538 (859)
.+...++..|-++..++.. ....+.+.--++.|+..|+.++++++.+|..++-.|-...++.-++
T Consensus 75 ~i~q~sLaILEs~Vl~S~~---ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~ 139 (160)
T PF11841_consen 75 SILQRSLAILESIVLNSPK---LYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRK 139 (160)
T ss_pred hHHHHHHHHHHHHHhCCHH---HHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHH
Confidence 8999999999999887643 2455667778999999999999999999998888776344444333
No 165
>PRK14707 hypothetical protein; Provisional
Probab=96.16 E-value=6.9 Score=50.77 Aligned_cols=603 Identities=13% Similarity=0.064 Sum_probs=280.8
Q ss_pred HHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhc-CCCCcchHHHHHHHHHHHhc-ccCcchH
Q 002999 156 VVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKS-SSKSVGTILRSKALMALLSM-AKDEESK 233 (859)
Q Consensus 156 l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~~~~~al~~L~~L-~~~~~~r 233 (859)
++...++-..+ ..++.+...|..+....+..+..+ ...+|..++.-++. ++. .-...|+..|... +.++..+
T Consensus 168 llNafSKw~~~-~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~----~~c~~aa~~la~~l~~~~~l~ 241 (2710)
T PRK14707 168 ALNAFSKWSDN-PDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDT----PDCGNAVSALAERLADESRLR 241 (2710)
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHcCcHHHH
Confidence 44444543333 345557777776665455555444 33445555555543 443 4455666666554 4444444
Q ss_pred HHHHhhCchHHHHHHh-cCCCHHHHHHHHHHHH-HhccChhhhhHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHh
Q 002999 234 KIMLEEGVTKSVIHSL-IGNSEKEKEYAVKLLL-EFCIDEAYCKSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKM 310 (859)
Q Consensus 234 ~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~-~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL 310 (859)
..+ +...+-..+..| +-.+..+...|+..|. .++.+...++.+. .--+...+.-|+ ..+.......|..+-..|
T Consensus 242 ~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~--~q~vanalNalSKwpd~~vc~~Aa~~la~rl 318 (2710)
T PRK14707 242 NEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD--PINVTQALNALSKWADLPVCAEAAIALAERL 318 (2710)
T ss_pred HhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC--HHHHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 444 334444444444 4566666677777666 4666666666664 333444444454 334444455555555666
Q ss_pred cCCCcChHHHHhcCChHHHHHHhccC-ChHHHHHHHHHHHH-hcCCCccHHHHHHhhHHHHHHHhC----ChhHHHHHHH
Q 002999 311 ERIEEIVQPLAAAGRFEPLINRLCQG-SDNVQIEMAFLVGK-LTLTNSCKEHIARQCAKVLVELLS----KPAGRAASLK 384 (859)
Q Consensus 311 ~~~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~-la~~~~~~~~i~~~gi~~Lv~lL~----~~~~~~~a~~ 384 (859)
..+++-+.. .+.-.+...++-|+.- +..+...++.+|.. ++.+++-+..+...|+...+.-|+ ++.++..|..
T Consensus 319 ~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 319 ADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred hccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 665443332 3333455556666543 33344455555554 566666688888788877777776 4445544444
Q ss_pred HHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHh
Q 002999 385 ALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGL 464 (859)
Q Consensus 385 aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~L 464 (859)
.-..|..+.+-++.+-..| |..++..|..- ++..+...++..|+.-..++..... -.+..-|...+.-
T Consensus 398 LA~~l~~d~~l~~~~~~Q~-van~lnalsKW--Pd~~~C~~aa~~lA~~la~d~~l~~---------~~~p~~va~~Lna 465 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQG-VSNALNALAKW--PDLPICGQAVSALAGRLAHDTELCK---------ALDPINVTQALDA 465 (2710)
T ss_pred HHHHhccChhhhhhcchhh-HHHHHHHhhcC--CcchhHHHHHHHHHHHHhccHHHHh---------hcChHHHHHHHHH
Confidence 4444554445666554444 45556666543 3456677777777755555433321 1223334444554
Q ss_pred hcC-CChHHHHHHHHHH-HHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhh--ccHHHHHhc
Q 002999 465 LSG-VSPQCQVSTLRIL-CGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSER--IGQDLAYAL 540 (859)
Q Consensus 465 L~~-~~~~~~~~a~~aL-~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~--~~~~~~~~l 540 (859)
|+. ++..+-..++..| ..|+.++ .+++.+.-.+....|-.+-+.++.. .+..++..|+.. ......+.+
T Consensus 466 lSKWPd~p~c~~aa~~La~~l~~~~----~l~~a~~~q~~~~~L~aLSK~Pd~~---~c~~A~~~lA~rl~~~~~l~~~~ 538 (2710)
T PRK14707 466 LSKWPDTPICGQTASALAARLAHER----RLRKALKPQEVVIALHSLSKWPDTP---ICAEAASALAERVVDELQLRKAF 538 (2710)
T ss_pred hhcCCCChhHHHHHHHHHHHhcccH----HHHhhcCHHHHHHHHHHhhcCCCcH---HHHHHHHHHHHHhccchhhhhhh
Confidence 443 2334444444444 3444442 1233332222222333333334432 222233333211 112222222
Q ss_pred CCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhh
Q 002999 541 KPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLG 620 (859)
Q Consensus 541 ~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~ 620 (859)
.. ..+..+++-|+.... ...-..++..|..+..++.....-+..-.|..+++.|..--. . ....+++..
T Consensus 539 ~~-~~~~~~lnalSKwp~-s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~-------~--~aC~~Aa~~ 607 (2710)
T PRK14707 539 DA-HQVVNTLKALSKWPD-KQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPD-------T--AVCAEAVNA 607 (2710)
T ss_pred hh-HHHHHHHHhhhcCCc-hhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCC-------c--HHHHHHHHH
Confidence 22 233344444433332 133344444555544445454444444555555555543211 1 111222222
Q ss_pred hhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhh-hhhhcccccccCCCCCCCccccccccceecC
Q 002999 621 LLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKN-LSEAGRSLCAEDTGSPTPRRFCASLVFICGK 699 (859)
Q Consensus 621 ~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~-ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (859)
+-..+.. +++.+..+-..++-..|-.+-+-+ ....-+.|+..|+. +..... +
T Consensus 608 LA~~l~~--~~~lr~~l~~q~lan~lNALSKWP-~s~~C~~Aa~rLA~rl~~~~~-------------------l----- 660 (2710)
T PRK14707 608 LAERLVD--EPDLRKELDPVDVTNVLNALSKWP-GTEVCAEVARLLAGRLVGDRL-------------------L----- 660 (2710)
T ss_pred HHHHhcc--ChhhhhhccHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHhhhchh-------------------h-----
Confidence 2222221 333333332233222232332333 33333444444432 111100 0
Q ss_pred CCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhc-cCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHH
Q 002999 700 PPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLA-EEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVV 778 (859)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~ 778 (859)
...| .+..|.-+++-|. -++.+++..|+.+|..-+.+ + + +...-...-+|.-++
T Consensus 661 -----------------~~~f---naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~-~--~--~Lr~al~pQ~vAN~L 715 (2710)
T PRK14707 661 -----------------RKTF---NSLDVANALNALSKWPDTPVCAAAAGGMAERLAA-D--P--GLRKELNPVDVANAL 715 (2710)
T ss_pred -----------------Hhhc---chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhc-C--h--hhHhhcCHHHHHHHH
Confidence 0000 1223444444443 46778888888888765544 1 1 222223445666677
Q ss_pred HHhhhcCchhHHHHHHHHHHHHH-hccccccccccchhhHHHHHHHhh-cCC-hhhHHHHHHHHHHHhhhcCCcCcc
Q 002999 779 DLFTEVRPGLLQERTVWMLERVL-RVEGHSHRYSLNQSLVRALVEAFK-HGN-ANAKRHAQEALTNLKQISGLSGKA 852 (859)
Q Consensus 779 ~ll~~~~~~~~~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~~Lv~ll~-~~~-~~~~~~A~~~L~~L~~~~~~~~~~ 852 (859)
+.|+-.++...-+.|+..|..-+ ...+....+...+ +.-.++.|. =.+ +..+..|...-..|.+.++....|
T Consensus 716 NALSKWP~~~~Cr~AA~~LA~rL~~~p~l~~a~~aQe--vANaLNALSKWPd~~~C~~AA~aLA~rLa~~~~Lr~aL 790 (2710)
T PRK14707 716 NALSKWPRTPVCAAVASALAARVVAEPRLRKAFDAQQ--VATALNALSKWPDNQACAAAANTLAERQLREPDVRDVL 790 (2710)
T ss_pred hhhhcCCCcHHHHHHHHHHHHHHhcChhhhhhcCHHH--HHHHHHHhhcCCCchHHHHHHHHHHHHHhhCcchhhhc
Confidence 77766677666666665554443 3333333333222 334444443 333 334444444444677666655444
No 166
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.08 E-value=0.0074 Score=49.81 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=37.0
Q ss_pred ccCcccccccCC-Ceec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 77 FLCPLTKQVMKE-PVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 77 ~~cpi~~~~m~d-Pv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
-.||.+..-=.| |++. .|||.|-..||.+|+... ..+..||.+|++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~---~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ---SSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccc---cCCCCCCCcCCeee
Confidence 447776665555 7665 899999999999999972 22579999998764
No 167
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.99 E-value=0.0045 Score=64.63 Aligned_cols=52 Identities=21% Similarity=0.510 Sum_probs=42.5
Q ss_pred CcccCcccccccCC--Ce--ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc
Q 002999 75 KNFLCPLTKQVMKE--PV--VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP 133 (859)
Q Consensus 75 ~~~~cpi~~~~m~d--Pv--~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p 133 (859)
..|.||||+..|.. +. +.+|||+|...+|.+.- . ...||+|++++...|++|
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~------~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K------SKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c------cccccccCCccccCCEEE
Confidence 45999999999965 33 44999999999999884 2 457999999998877664
No 168
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.0073 Score=59.42 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=42.0
Q ss_pred cccCcccccccCCCe----ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCc
Q 002999 76 NFLCPLTKQVMKEPV----VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELK 132 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv----~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~ 132 (859)
.|+|||++-.|.+-. +-+|||.|.-.++.+.-. .+||+|++.++.++.+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika--------s~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA--------SVCHVCGAAYQEDDVI 163 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhhh--------ccccccCCcccccCeE
Confidence 499999999999853 559999999999988764 4999999999887754
No 169
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=5.7 Score=48.17 Aligned_cols=431 Identities=13% Similarity=0.111 Sum_probs=213.0
Q ss_pred HHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC---cchHHHHHhhCchHHHHHH-----hcCCC--HHHHHH
Q 002999 190 RVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD---EESKKIMLEEGVTKSVIHS-----LIGNS--EKEKEY 259 (859)
Q Consensus 190 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~---~~~r~~i~~~g~i~~Lv~l-----L~~~~--~~~~~~ 259 (859)
.+...|....+.++++..+.. +.-..+...+..|... ++++..+.+ ....++.- |+..+ ....+.
T Consensus 230 ~~~~~g~L~al~ai~k~~~r~---d~l~~~~~~~r~L~~~~~~~d~~~llrK--llvKl~QRiGlv~l~prs~sWrY~rg 304 (1133)
T KOG1943|consen 230 IFYKLGFLIALLAIFKHGSRK---DLLPYSDTGLRMLSVCRESNDGQSLLRK--LLVKLVQRIGLVSLKPRSPSWRYSRG 304 (1133)
T ss_pred hHHHHHHHHHHHHHHHhcchh---hhHHHhhhhhHhhcccccccccHhHHHH--HHHHHHHHhhheecCCCCcchhhhcc
Confidence 667778888888998887552 4455555566665543 333312211 12223321 12222 222222
Q ss_pred HHHHHHHhccC--------------hh--hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhc
Q 002999 260 AVKLLLEFCID--------------EA--YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAA 323 (859)
Q Consensus 260 A~~~L~~Ls~~--------------~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~ 323 (859)
....-.||..+ ++ ....+. ++++..|...|+ +.|..++-.|+.-+..+..... ..+++
T Consensus 305 ~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eiv--E~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp--~~Lad- 378 (1133)
T KOG1943|consen 305 TRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIV--EFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLP--PELAD- 378 (1133)
T ss_pred cchhhhccCccccccCcccccccccccccccHHHH--HHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCc--HHHHH-
Confidence 22223333221 11 112332 467788888888 7888999999999999987544 22222
Q ss_pred CChHHHHHHhccCC-hHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC----------ChhHHHHHHHHHHHhhCC
Q 002999 324 GRFEPLINRLCQGS-DNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS----------KPAGRAASLKALYNLSGL 392 (859)
Q Consensus 324 G~i~~Lv~lL~~~~-~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~----------~~~~~~~a~~aL~~Ls~~ 392 (859)
.+|...++++.... +..=-.++.+|+.|+.-.=-........+|.+++-|. ...++.+|+-+.|.++..
T Consensus 379 ~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra 458 (1133)
T KOG1943|consen 379 QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA 458 (1133)
T ss_pred HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc
Confidence 25666677665444 3333355567887775332222222333455555444 457899999999999876
Q ss_pred Ccch--HHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCCh
Q 002999 393 DDNA--TILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSP 470 (859)
Q Consensus 393 ~~~~--~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~ 470 (859)
.+.. +.++..=+-..|+..++ |+....+..|.+++....+...+... +++ |+...+--+-
T Consensus 459 ys~~~l~p~l~~L~s~LL~~AlF---DrevncRRAAsAAlqE~VGR~~n~p~--------------Gi~-Lis~~dy~sV 520 (1133)
T KOG1943|consen 459 YSPSDLKPVLQSLASALLIVALF---DREVNCRRAASAALQENVGRQGNFPH--------------GIS-LISTIDYFSV 520 (1133)
T ss_pred CChhhhhHHHHHHHHHHHHHHhc---CchhhHhHHHHHHHHHHhccCCCCCC--------------chh-hhhhcchhhh
Confidence 5322 22222212222333443 46778999999999877776544321 111 1221222222
Q ss_pred HHHHHHHHHHHH-hccCChhHHHHHHHHhhCCCHHHHHHh-hcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHH
Q 002999 471 QCQVSTLRILCG-IASSPQAAESVATHIKSGDGIKYIIQF-LEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVL 548 (859)
Q Consensus 471 ~~~~~a~~aL~~-La~~~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~ 548 (859)
..+.+|-..++. ++..+. .+.. .+.+|+.- +.+=+..+|+.++++|..|+...++. ...+.+++
T Consensus 521 ~~rsNcy~~l~~~ia~~~~----y~~~-----~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~-----~a~~~L~~ 586 (1133)
T KOG1943|consen 521 TNRSNCYLDLCVSIAEFSG----YREP-----VFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY-----LADYVLPP 586 (1133)
T ss_pred hhhhhHHHHHhHHHHhhhh----HHHH-----HHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh-----hcccchhh
Confidence 333444333332 222221 1111 12333333 44557789999999999997443332 23467888
Q ss_pred HHHhhccCCCchhHHH----HHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHh-hhhhhh
Q 002999 549 FKDKILDNQSANCERS----DAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEG-LLGLLL 623 (859)
Q Consensus 549 Lv~lL~~~~~~~~~~~----~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~-~~~~L~ 623 (859)
|+....+.+. ..+. ++..+++++-.-.+....+- ...|..+.+.+..+-.... .+-...+... ..+.+-
T Consensus 587 lld~~ls~~~--~~r~g~~la~~ev~~~~~~l~~~~~~l~-e~~i~~l~~ii~~~~~~~~---~rg~~~lmr~~~~~~Ie 660 (1133)
T KOG1943|consen 587 LLDSTLSKDA--SMRHGVFLAAGEVIGALRKLEPVIKGLD-ENRIAGLLSIIPPICDRYF---YRGQGTLMRQATLKFIE 660 (1133)
T ss_pred hhhhhcCCCh--HHhhhhHHHHHHHHHHhhhhhhhhhhhH-HHHhhhhhhhccHHHHHHh---ccchHHHHHHHHHHHHH
Confidence 8887777765 4443 33333333322111111111 1111221111111100000 0111112222 222222
Q ss_pred hcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 624 HFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 624 ~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
.+.. .++.......-.+.--.+.+.+..+ + .+|..|.++++.+...
T Consensus 661 ~~s~-s~~~~~~~~v~e~~~~ll~~~l~~~-n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 661 QLSL-SKDRLFQDFVIENWQMLLAQNLTLP-N-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred Hhhh-ccchhHHHHHHHHHHHHHHHhhcch-H-HHHHHHHHHHHHHHHH
Confidence 2322 2333333344445555666666554 5 8999999999988653
No 170
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.97 E-value=0.017 Score=50.18 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHh
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLE 238 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~ 238 (859)
.++.|.++|..++.++..+.+.|++|.++....-++.++ .++++|+.++++|+.+ ++|++.|.+
T Consensus 6 lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP--~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 6 LVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNP--FIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccH--HHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 678899999999999999999999999999876543322 9999999999999998 889888876
No 171
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.94 E-value=0.0082 Score=46.13 Aligned_cols=55 Identities=24% Similarity=0.136 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHh
Q 002999 515 VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANI 573 (859)
Q Consensus 515 ~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L 573 (859)
+.+|..|+++|.+++...+......+. ..++.|+.+|.++++ .|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~--~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP--ELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH--HHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH--HHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 468999999999988555444444333 689999999988776 9999999999976
No 172
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.89 E-value=0.036 Score=48.11 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhc--CCChhHHHHHHHHHHHHhhhccHHHHHhcC
Q 002999 472 CQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLE--HPEVEHRTYAFRLTRILSERIGQDLAYALK 541 (859)
Q Consensus 472 ~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~ 541 (859)
++..++++|.+||.... .++..+++.||++.+++... ..+|.+|+.|.+++++|. ..+.++++.+.
T Consensus 2 ~K~~lvrlianl~~~~~---~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~-e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNK---EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLC-EGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCH---HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence 46678899999998764 55788999999999999754 456899999999999999 55666665554
No 173
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=5.5 Score=50.01 Aligned_cols=431 Identities=12% Similarity=0.064 Sum_probs=212.5
Q ss_pred HHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhh-hhHhhhhhChHHHHHHhhcC
Q 002999 215 LRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY-CKSVASEKGALVLLSSMTGN 293 (859)
Q Consensus 215 ~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~ 293 (859)
-+..|+--+..++....-+..=.-...||.|.++=-.++..++.....+=..|..++.. ...-. ...+..|+.-|.
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~--neIl~eLL~~lt- 1049 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL--NEILDELLVNLT- 1049 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH--HHHHHHHHHhcc-
Confidence 35666666666665421111111234688888877778877765444444445555322 11111 223344444444
Q ss_pred CCChHHHHHHHHHHHHhcCCCcChH---HHHhcCChHHHHHHhccCChHHHHH---HHHHHHHhcC---CCcc--H-HHH
Q 002999 294 LELPALSNLADEVFKKMERIEEIVQ---PLAAAGRFEPLINRLCQGSDNVQIE---MAFLVGKLTL---TNSC--K-EHI 361 (859)
Q Consensus 294 ~~~~~~~~~a~~aL~nL~~~~~~~~---~i~~~G~i~~Lv~lL~~~~~~~~~~---aa~~L~~la~---~~~~--~-~~i 361 (859)
+..=.+++.++.+|..|-...++-. .+- ..-..+.+.+.+-.+.++.. ++.+|+.++. +..+ + ..+
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 4566889999999999997654422 222 12222333333333334433 4566777653 2211 1 122
Q ss_pred HHhhHHHHHH--HhC-ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCC---------CHHHHHHHHHH
Q 002999 362 ARQCAKVLVE--LLS-KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDA---------SPELKELAAAT 429 (859)
Q Consensus 362 ~~~gi~~Lv~--lL~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~---------~~~~~~~a~~~ 429 (859)
.....|.|+. +|+ -++++..+..++..|+.+....-.-.-...||.|+..... .++ .......|...
T Consensus 1128 l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~-lE~~vLnYls~r~~~~e~ealDt 1206 (1702)
T KOG0915|consen 1128 LDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE-LEPQVLNYLSLRLINIETEALDT 1206 (1702)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc-cchHHHHHHHHhhhhhHHHHHHH
Confidence 2334477765 556 7789999999999998766332111112345555555432 000 01222233333
Q ss_pred HH-HhhcCCCcccccccc-cccCcccccchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHH
Q 002999 430 IA-NVVSNPGCWELASAD-KLGHSMQSESIVSSLLGLLSGV-SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYI 506 (859)
Q Consensus 430 L~-nL~~~~~~~~~~~~~-~~~~~l~~~~~i~~Ll~LL~~~-~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~L 506 (859)
++ +.+.+++-+.++-.- .....-+-+..+|.+.++++.+ .-..+..|+..++-|+..-. .++... ....+..+
T Consensus 1207 ~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~--~emtP~--sgKll~al 1282 (1702)
T KOG0915|consen 1207 LRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG--SEMTPY--SGKLLRAL 1282 (1702)
T ss_pred HHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc--cccCcc--hhHHHHHH
Confidence 32 233344333321000 0000011245677888887654 23566667776666654300 000000 01235667
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHh
Q 002999 507 IQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEA 586 (859)
Q Consensus 507 v~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~ 586 (859)
+..+++.++.++..-+.+...|.....++.... .++.++..+..+++ .....+++++.+++.+..+.-.=...
T Consensus 1283 ~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qK-----Lie~~l~~~l~k~e--s~~siscatis~Ian~s~e~Lkn~as 1355 (1702)
T KOG0915|consen 1283 FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQK-----LIETLLADLLGKDE--SLKSISCATISNIANYSQEMLKNYAS 1355 (1702)
T ss_pred hhccccccHHHHHHHHHHHHHHHhcCChHHHHH-----HHHHHHHHHhccCC--CccchhHHHHHHHHHhhHHHHHhhHH
Confidence 777888889999888888888886555544333 33445554444443 33366777888776644442110111
Q ss_pred ccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHh
Q 002999 587 TFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGL 666 (859)
Q Consensus 587 g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL 666 (859)
-.+|. +-+-.. .. .+....+- -.++..++.. .....+.....-+++.....+++. +..++..+|.++
T Consensus 1356 aILPL-iFLa~~-ee------~Ka~q~Lw---~dvW~e~vsg-gagtvrl~~~eiLn~iceni~nn~-~w~lr~q~Akai 1422 (1702)
T KOG0915|consen 1356 AILPL-IFLAMH-EE------EKANQELW---NDVWAELVSG-GAGTVRLYLLEILNLICENITNNE-SWKLRKQAAKAI 1422 (1702)
T ss_pred HHHHH-HHHHHh-HH------HHHHHHHH---HHHHHHhCCC-CcchhhhhHHHHHHHHHHHhccch-HHHHHHHHHHHH
Confidence 12232 221111 00 00000111 1122223222 122222222222345555666664 799999999999
Q ss_pred hhhhhhccc
Q 002999 667 KNLSEAGRS 675 (859)
Q Consensus 667 ~~ls~~~~~ 675 (859)
..++.+...
T Consensus 1423 ~~~a~~~ss 1431 (1702)
T KOG0915|consen 1423 RVIAEGLSS 1431 (1702)
T ss_pred HHHcccccc
Confidence 887766443
No 174
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.84 E-value=1.5 Score=44.59 Aligned_cols=254 Identities=20% Similarity=0.213 Sum_probs=144.3
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhH
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKS 276 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 276 (859)
+..+.+.|...+. ...-+..|+-.|+++... +.+..+.+....++...+...+..|..+
T Consensus 5 i~~i~~~L~~~s~--~l~~r~rALf~Lr~l~~~----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~--------- 63 (289)
T KOG0567|consen 5 IETIGNILVNKSQ--PLQNRFRALFNLRNLLGP----------AAIKAITKAFIDDSALLKHELAYVLGQM--------- 63 (289)
T ss_pred HHHHHHHHcCccH--HHHHHHHHHHhhhccCCh----------HHHHHHHHhcccchhhhccchhhhhhhh---------
Confidence 3445555554322 114566677777766543 3355666655555444445555555555
Q ss_pred hhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC
Q 002999 277 VASEKGALVLLSSMTG-NLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN 355 (859)
Q Consensus 277 i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~ 355 (859)
....+++.|+..|. .+..|-++..|..+|.++. .+. ..+.|-+..++...+++..+-.+|..+-..+
T Consensus 64 --~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 64 --QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred --ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 23558889998887 4456777788888888776 322 3344445555555666666555665553211
Q ss_pred cc-H-----HHHH--------HhhHHHHHH-HhC--Chh-HHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCC
Q 002999 356 SC-K-----EHIA--------RQCAKVLVE-LLS--KPA-GRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHD 417 (859)
Q Consensus 356 ~~-~-----~~i~--------~~gi~~Lv~-lL~--~~~-~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~ 417 (859)
.. + ..+. ..-+..|-. +++ -+. -+..|...|+|+-. ..+|..|++-+. .
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~---~ 198 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLA---D 198 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcc---c
Confidence 11 0 0110 011222222 233 122 23335555555421 112334444442 2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcC--CChHHHHHHHHHHHHhccCChhHHHHHH
Q 002999 418 ASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSG--VSPQCQVSTLRILCGIASSPQAAESVAT 495 (859)
Q Consensus 418 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~--~~~~~~~~a~~aL~~La~~~~~~~~~~~ 495 (859)
++.-.+-.++.++. .+.+.-.|+.|.+.|.. .+|-++..|+.+|..++...
T Consensus 199 ~SalfrhEvAfVfG-------------------Ql~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-------- 251 (289)
T KOG0567|consen 199 DSALFRHEVAFVFG-------------------QLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-------- 251 (289)
T ss_pred chHHHHHHHHHHHh-------------------hccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH--------
Confidence 34455666777765 35556678888887754 46788889999999987652
Q ss_pred HHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 496 HIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 496 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
.++.|..++.++.+-+++.+.-+|-.+-
T Consensus 252 ------~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 252 ------CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3577888888888888888877776654
No 175
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.66 E-value=0.016 Score=44.50 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 002999 297 PALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKL 351 (859)
Q Consensus 297 ~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~l 351 (859)
+.++..|+.+|.+++........-....+++.|+.+|.+++++++..++++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678899999999886655444445567899999999999999999999999875
No 176
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.014 Score=60.00 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=44.4
Q ss_pred CCCCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 70 HILPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 70 ~~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
..|..|+=+||||..---..|..||||.-|..||.+|+.. ...|-+|+....
T Consensus 416 ~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN------~k~CFfCktTv~ 467 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN------CKRCFFCKTTVI 467 (489)
T ss_pred CCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhc------CCeeeEecceee
Confidence 5576788999999988788889999999999999999998 568888876544
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.52 E-value=0.53 Score=57.00 Aligned_cols=296 Identities=14% Similarity=0.088 Sum_probs=157.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 002999 405 LPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIA 484 (859)
Q Consensus 405 i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La 484 (859)
++.+...+++- .....+.+|+..|..|+..-..-. .-..++|-+++|+.+..+++|..|+.+|+.+-
T Consensus 424 vs~lts~IR~l--k~~~tK~~ALeLl~~lS~~i~de~-----------~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L 490 (1431)
T KOG1240|consen 424 VSVLTSCIRAL--KTIQTKLAALELLQELSTYIDDEV-----------KLDRVLPYFVHLLMDSEADVRATALETLTELL 490 (1431)
T ss_pred HHHHHHHHHhh--hcchhHHHHHHHHHHHhhhcchHH-----------HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 44555555542 235788899999998887543322 12567899999999999999999999988774
Q ss_pred cC----ChhHHHHHHHHhhCCCHHHHHHhhcC-CChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCc
Q 002999 485 SS----PQAAESVATHIKSGDGIKYIIQFLEH-PEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSA 559 (859)
Q Consensus 485 ~~----~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~ 559 (859)
.. +... ..|...=.+|.|-.++.+ ....+|..-+..|..|+... -.+.+.+.-.....++.+.++
T Consensus 491 ~~Vr~~~~~d----aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA-----~rFle~~q~~~~~g~~n~~ns- 560 (1431)
T KOG1240|consen 491 ALVRDIPPSD----ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA-----YRFLELTQELRQAGMLNDPNS- 560 (1431)
T ss_pred hhccCCCccc----chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH-----HHHHHHHHHHHhcccccCccc-
Confidence 32 2111 112333457888888888 44567776677777776211 111111111222233444433
Q ss_pred hhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhc-ccCCChhhHHHHH
Q 002999 560 NCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHF-TRSVNPQTLGMVR 638 (859)
Q Consensus 560 ~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~-~~~~~~~~~~~i~ 638 (859)
+. ..+ ...+....++.+ ++=...+.+|.+... .....+++. ++-|+.| ......+
T Consensus 561 -et-------~~~-~~~~~~~~~L~~-~V~~~v~sLlsd~~~-------~Vkr~Lle~-i~~LC~FFGk~ksND------ 616 (1431)
T KOG1240|consen 561 -ET-------APE-QNYNTELQALHH-TVEQMVSSLLSDSPP-------IVKRALLES-IIPLCVFFGKEKSND------ 616 (1431)
T ss_pred -cc-------ccc-cccchHHHHHHH-HHHHHHHHHHcCCch-------HHHHHHHHH-HHHHHHHhhhccccc------
Confidence 10 000 011222222221 111112223322110 011223344 2222222 2211111
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCC
Q 002999 639 EQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDS 718 (859)
Q Consensus 639 ~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (859)
-+++.|+..|++. ++..|-. |..+-...+ .+....
T Consensus 617 --~iLshLiTfLNDk-Dw~LR~a-------FfdsI~gvs------------------i~VG~r----------------- 651 (1431)
T KOG1240|consen 617 --VILSHLITFLNDK-DWRLRGA-------FFDSIVGVS------------------IFVGWR----------------- 651 (1431)
T ss_pred --chHHHHHHHhcCc-cHHHHHH-------HHhhccceE------------------EEEeee-----------------
Confidence 2367788889986 7766632 111110000 011100
Q ss_pred cchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHH
Q 002999 719 QLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLE 798 (859)
Q Consensus 719 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~ 798 (859)
-++.+.+|.|.+-|.++++.|...|+++|..|... +---+..+..|.+ -..-+|. |++.=+|..++..+.
T Consensus 652 ---s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~-----~v~PlL~-hPN~WIR~~~~~iI~ 721 (1431)
T KOG1240|consen 652 ---SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQ-----DVLPLLC-HPNLWIRRAVLGIIA 721 (1431)
T ss_pred ---eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHH-----hhhhhee-CchHHHHHHHHHHHH
Confidence 13567788899999999999999999999999965 3211111222222 2233455 799999999988887
Q ss_pred HHHh
Q 002999 799 RVLR 802 (859)
Q Consensus 799 ~~~~ 802 (859)
.+.+
T Consensus 722 ~~~~ 725 (1431)
T KOG1240|consen 722 AIAR 725 (1431)
T ss_pred HHHh
Confidence 7775
No 178
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.51 E-value=4.7 Score=45.50 Aligned_cols=345 Identities=13% Similarity=0.069 Sum_probs=179.5
Q ss_pred hHHHHHHhcCCCH---HHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-Cc--
Q 002999 242 TKSVIHSLIGNSE---KEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EE-- 315 (859)
Q Consensus 242 i~~Lv~lL~~~~~---~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~-- 315 (859)
+|.+...|...+. ...+....+|..+|.+++.-+.+. ...+..|-.......+.+.....+.+|.++... .+
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~--~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLS--IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 3667777766543 567889999999999988765553 234445555444333555666677777777532 11
Q ss_pred ---ChHHHHhcCChHHHHHHhccC-------ChHHHHHHHHHHHHhcC--CCccHHHHHHhhHHHHHH-----HhC---C
Q 002999 316 ---IVQPLAAAGRFEPLINRLCQG-------SDNVQIEMAFLVGKLTL--TNSCKEHIARQCAKVLVE-----LLS---K 375 (859)
Q Consensus 316 ---~~~~i~~~G~i~~Lv~lL~~~-------~~~~~~~aa~~L~~la~--~~~~~~~i~~~gi~~Lv~-----lL~---~ 375 (859)
......+...+|.++++.... ++.+...++..+..+.. +.+.+..+.+........ -+. +
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~ 158 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSS 158 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccc
Confidence 123344455888888876321 13444555555555443 223333333333222220 000 1
Q ss_pred ------hhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCccccccccccc
Q 002999 376 ------PAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLG 449 (859)
Q Consensus 376 ------~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~ 449 (859)
.....-...+|..+-...... .. ...+..++.+..+. .+...+..++..++.|+..-..-.
T Consensus 159 ~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~--~~~~~~~~~~~~la~LvNK~~~~~-------- 225 (415)
T PF12460_consen 159 TISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSS--EDEFSRLAALQLLASLVNKWPDDD-------- 225 (415)
T ss_pred ccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCChh--------
Confidence 111122333444443322111 11 12667777777553 336788888888888766421111
Q ss_pred CcccccchHHHHHHhh-cCCChHHHHH----HHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHH
Q 002999 450 HSMQSESIVSSLLGLL-SGVSPQCQVS----TLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRL 524 (859)
Q Consensus 450 ~~l~~~~~i~~Ll~LL-~~~~~~~~~~----a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~ 524 (859)
.-...+..+..-+ ....+..+.. ..|+...+....... . . ..+..|+.++.+ +++...++++
T Consensus 226 ---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~--~-~-----~~~~~L~~lL~~--~~~g~~aA~~ 292 (415)
T PF12460_consen 226 ---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL--A-T-----ELLDKLLELLSS--PELGQQAAKA 292 (415)
T ss_pred ---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch--H-H-----HHHHHHHHHhCC--hhhHHHHHHH
Confidence 0123344444433 2233333333 445554443332211 0 0 135778888866 7778888999
Q ss_pred HHHHhhhccHHH--------HHhcCCC----CchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHH-hccHHH
Q 002999 525 TRILSERIGQDL--------AYALKPF----DKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLE-ATFIKW 591 (859)
Q Consensus 525 L~~Ls~~~~~~~--------~~~l~~~----g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~-~g~v~~ 591 (859)
+..|.... ++. .+-+-+. ..+|.|++..+..+. +.+..-..+|+.+-.+-+..-.+-+ ...+|.
T Consensus 293 f~il~~d~-~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~--~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPL 369 (415)
T PF12460_consen 293 FGILLSDS-DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD--EIKSNYLTALSHLLKNVPKSVLLPELPTLLPL 369 (415)
T ss_pred HhhHhcCc-HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh--hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 98887321 221 1111111 457888888888776 5666777777777664333222222 335566
Q ss_pred HHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccC
Q 002999 592 IVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRS 628 (859)
Q Consensus 592 L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~ 628 (859)
+++.|.. ....+...++.+|..+...
T Consensus 370 LlqsL~~-----------~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 370 LLQSLSL-----------PDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHhCC-----------CCHHHHHHHHHHHHHHHHc
Confidence 5555532 1122456667777666653
No 179
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.44 E-value=0.0078 Score=56.77 Aligned_cols=44 Identities=25% Similarity=0.499 Sum_probs=37.7
Q ss_pred ccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
|.|-||..-++.||++.|||.||-.|-.+-... .+.|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k------g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK------GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc------CCcceecchhh
Confidence 999999999999999999999999986655544 57899997654
No 180
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.0083 Score=58.74 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=31.6
Q ss_pred ccCcccccccCCCeecCCCchhcHHHHHHHHHh
Q 002999 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFER 109 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~ 109 (859)
=+|.+|.+-..|||+.+.||.|||+||.+++..
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 589999999999999999999999999999986
No 181
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.008 Score=69.93 Aligned_cols=44 Identities=27% Similarity=0.637 Sum_probs=40.0
Q ss_pred cccCcccccccCC-----CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcc
Q 002999 76 NFLCPLTKQVMKE-----PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQV 125 (859)
Q Consensus 76 ~~~cpi~~~~m~d-----Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~ 125 (859)
+-.|+||.+.|.. |-.++|||.|...|+.+|+++ ..+||+||..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er------~qtCP~CR~~ 339 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER------QQTCPTCRTV 339 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH------hCcCCcchhh
Confidence 3569999999999 678899999999999999998 6899999873
No 182
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.35 E-value=2.7 Score=42.84 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=55.5
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC----ChhHHHHHHHHHHHhhCCCcchHHHHH
Q 002999 326 FEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS----KPAGRAASLKALYNLSGLDDNATILVD 401 (859)
Q Consensus 326 i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~----~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 401 (859)
|..+.+...+++...+-+.+-+|+.+.. +..++.|+..|. .+-++..|..||.++. .
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~---------~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~ 98 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD---------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------D 98 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc---------chhhHHHHHHhcccccchHHHHHHHHHHHhhc----------c
Confidence 5555555555555556666666664432 346788888777 5567788999988874 2
Q ss_pred cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002999 402 SALLPALTDILFKSHDASPELKELAAATIANVV 434 (859)
Q Consensus 402 ~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~ 434 (859)
.+.++.|-++.+ ++-..+++.+..++..+-
T Consensus 99 ~~~~~~l~k~~~---dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 99 PESLEILTKYIK---DPCKEVRETCELAIKRLE 128 (289)
T ss_pred hhhHHHHHHHhc---CCccccchHHHHHHHHHH
Confidence 234455555552 355677777777777663
No 183
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.29 E-value=1.2 Score=44.75 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc----CCCChHHHHHHHHHHHHhcCCCc--ChHHHHhcCChHH
Q 002999 255 KEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG----NLELPALSNLADEVFKKMERIEE--IVQPLAAAGRFEP 328 (859)
Q Consensus 255 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~a~~aL~nL~~~~~--~~~~i~~~G~i~~ 328 (859)
.-..+|..+|..++.+++.+..+.. ...--.|-.+|. +...+-.+-.+++++..|.+.++ -...+...++||.
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3456888889999999988877764 333333333443 44566778899999999997543 3456788999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHH-----hhH-----HHHHHHhC--ChhHHHHHHHHHHHhhCCCcch
Q 002999 329 LINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIAR-----QCA-----KVLVELLS--KPAGRAASLKALYNLSGLDDNA 396 (859)
Q Consensus 329 Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~-----~gi-----~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~ 396 (859)
.++.+..|++..|.-|+..+..+-.+|.+-..+-+ ..+ .-+.++.+ ++.+.+...++..+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999977555421 112 22233444 8888999999999999888777
Q ss_pred HHHHH
Q 002999 397 TILVD 401 (859)
Q Consensus 397 ~~i~~ 401 (859)
.++..
T Consensus 253 ~aL~~ 257 (293)
T KOG3036|consen 253 AALRS 257 (293)
T ss_pred HHHHh
Confidence 66643
No 184
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.27 E-value=1.1 Score=49.32 Aligned_cols=286 Identities=15% Similarity=0.123 Sum_probs=145.5
Q ss_pred HHHHHHHhcccc----cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHH
Q 002999 140 AIEEWVNRNVEV----QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTIL 215 (859)
Q Consensus 140 ~I~~w~~~~~~~----~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 215 (859)
.|.+.++.+... .++.+++.|.++++...+. .++-.|..-|. ++..|..+...|.+..+++.+.....+. ..
T Consensus 6 sihElr~~Gen~rf~Dev~ylld~l~~~~~~s~Rr-~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~--~~ 81 (361)
T PF07814_consen 6 SIHELREAGENQRFADEVEYLLDGLESSSSSSVRR-SSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDD--IL 81 (361)
T ss_pred cHHHHHHhhhhhhHHHHHHHHHhhcccCCCccHHH-HHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchH--HH
Confidence 355555555543 3777888888655554444 46777777776 6778899999999999999995543311 23
Q ss_pred HHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCH-HHHHHH-HHHHHHhccChhhhhHhhhhhChHHHHHHhhc-
Q 002999 216 RSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSE-KEKEYA-VKLLLEFCIDEAYCKSVASEKGALVLLSSMTG- 292 (859)
Q Consensus 216 ~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~-~~~~~A-~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~- 292 (859)
-..++.++..++.+..+-..+.+.+....+++++..... +..... ..-=.++++ +. .+.+..+..++.
T Consensus 82 ~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~--~~~~~~~~~~~~~ 152 (361)
T PF07814_consen 82 ALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQ--QKSRSLCKELLSS 152 (361)
T ss_pred HHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhH-------HH--HHHHHHHHHHHhc
Confidence 333444555555554444444455666666777771100 000000 000000110 00 111111222221
Q ss_pred -------CCCChHHHHHHHHHHHHhc---------------CCCcChHHHHhcCChHHHHHHhcc----CC---------
Q 002999 293 -------NLELPALSNLADEVFKKME---------------RIEEIVQPLAAAGRFEPLINRLCQ----GS--------- 337 (859)
Q Consensus 293 -------~~~~~~~~~~a~~aL~nL~---------------~~~~~~~~i~~~G~i~~Lv~lL~~----~~--------- 337 (859)
.......+..|..+|..++ ..+..+..+.+.|++..++..+.+ .+
T Consensus 153 ~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~ 232 (361)
T PF07814_consen 153 GSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPS 232 (361)
T ss_pred cccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccc
Confidence 0111122333444444442 113346778889999999999851 11
Q ss_pred ---hHHHHHHHHHHHHhcC-CCccHHHHHH--hh-H-HHHHHHhC-----ChhHHHHHHHHHHHhhCCC-cchHHHHHcC
Q 002999 338 ---DNVQIEMAFLVGKLTL-TNSCKEHIAR--QC-A-KVLVELLS-----KPAGRAASLKALYNLSGLD-DNATILVDSA 403 (859)
Q Consensus 338 ---~~~~~~aa~~L~~la~-~~~~~~~i~~--~g-i-~~Lv~lL~-----~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G 403 (859)
...-..+.++|-+.+. +.+|+..+.. .+ . ..+..++. .......+++.|.||+.++ ..+..+...+
T Consensus 233 ~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 233 LQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred hHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 1122334455555554 4456555432 22 2 22233333 3444678999999999877 4455555443
Q ss_pred cHHHHHHHHh---c--------cCCCCHHHHHHHHHHHHHhhcCCC
Q 002999 404 LLPALTDILF---K--------SHDASPELKELAAATIANVVSNPG 438 (859)
Q Consensus 404 ~i~~Lv~lL~---~--------~~~~~~~~~~~a~~~L~nL~~~~~ 438 (859)
....+..+.. . ..+...+...-++++|-||+.+++
T Consensus 313 l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 313 LGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred hccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence 3222211111 1 112234566667778888877654
No 185
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.011 Score=62.52 Aligned_cols=46 Identities=15% Similarity=0.483 Sum_probs=39.8
Q ss_pred ccCcccccccC--CCe-ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 77 FLCPLTKQVMK--EPV-VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 77 ~~cpi~~~~m~--dPv-~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+.|-||++-++ |-+ ++||+|.|=..||-.|+..+ +.+||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-----r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-----RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-----CccCCCCCCcCC
Confidence 78999999998 556 78999999999999999982 467999988653
No 186
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.25 E-value=0.13 Score=44.72 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=52.8
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhc
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQ 574 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 574 (859)
.+++++..+.+++.+||..|+.+|.+++....++....+. ..+..|.+++.+.+. .|+..| ..|-++-
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~D~d~--~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSADPDE--NVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCch--hHHHHH-HHHHHHh
Confidence 4789999999999999999999999999665555545444 578889999988886 666544 5665543
No 187
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.11 E-value=0.29 Score=46.16 Aligned_cols=120 Identities=10% Similarity=0.101 Sum_probs=90.2
Q ss_pred HHHhcCcHHHHHHHHhcCCC--CcchHHHHHHHHHHHhcccCcc-hHHHHHhhCchHHHHHHhcCC--CHHHHHHHHHHH
Q 002999 190 RVRNAGVVLLIVKLLKSSSK--SVGTILRSKALMALLSMAKDEE-SKKIMLEEGVTKSVIHSLIGN--SEKEKEYAVKLL 264 (859)
Q Consensus 190 ~i~~~g~i~~Lv~lL~~~~~--~~~~~~~~~al~~L~~L~~~~~-~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L 264 (859)
.+.+.||++.|++++.++.. ....+....++.++..|-.+.. .+ ...+...|..++.+.... +..+...|+.+|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45667899999999988763 0112677889999999887744 34 356667888888888764 467888999999
Q ss_pred HHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhc
Q 002999 265 LEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKME 311 (859)
Q Consensus 265 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~ 311 (859)
-++..++...-......=-++.|+..|+ ..+++++.+|...+-.|-
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq-~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQ-VSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence 9998876653333334557899999999 788999999887766665
No 188
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.02 E-value=2.7 Score=50.64 Aligned_cols=184 Identities=18% Similarity=0.168 Sum_probs=108.8
Q ss_pred hhHHHHHHHhC-------ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhc---c--CCCCHHHHHHHHHHHH
Q 002999 364 QCAKVLVELLS-------KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFK---S--HDASPELKELAAATIA 431 (859)
Q Consensus 364 ~gi~~Lv~lL~-------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~---~--~~~~~~~~~~a~~~L~ 431 (859)
+|+..|+.+|. ........+..|...+.-..||+.+++.|+++.|+..|.. . +.....+.+.-+.++.
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 45667777666 2345556777788888888999999999999999998864 1 1122577788888887
Q ss_pred HhhcCCCcccccccccccCcc-----cccchHHHHHHhhcCC----ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCC
Q 002999 432 NVVSNPGCWELASADKLGHSM-----QSESIVSSLLGLLSGV----SPQCQVSTLRILCGIASSPQAAESVATHIKSGDG 502 (859)
Q Consensus 432 nL~~~~~~~~~~~~~~~~~~l-----~~~~~i~~Ll~LL~~~----~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~ 502 (859)
.|......... ......... ....-+..|+..+.+. ++.+....+++|-.|+.+..... +.+
T Consensus 197 ~ll~ea~~~~~-~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m---~~L----- 267 (802)
T PF13764_consen 197 SLLSEANSSSS-SESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM---DAL----- 267 (802)
T ss_pred HHHHHHhhhhh-hhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH---HHH-----
Confidence 77554321110 000000001 1233466677766553 56888899999999998864321 111
Q ss_pred HHHHHHhhcCC------ChhHHHHHHHHHHHHhh-----hccHHHHHhcCCCCchHHHHHhhccCC
Q 002999 503 IKYIIQFLEHP------EVEHRTYAFRLTRILSE-----RIGQDLAYALKPFDKLVLFKDKILDNQ 557 (859)
Q Consensus 503 i~~Lv~lL~~~------~~~v~~~A~~~L~~Ls~-----~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 557 (859)
+..+-..++-+ .++- ..-+..++.++. ..+..+++.+.+.|.+...++.|...-
T Consensus 268 v~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~ 332 (802)
T PF13764_consen 268 VEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHF 332 (802)
T ss_pred HHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 23333333211 1111 122455555552 234567778888888887777776544
No 189
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=12 Score=45.45 Aligned_cols=255 Identities=12% Similarity=0.045 Sum_probs=148.0
Q ss_pred hCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChH
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQ 318 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~ 318 (859)
.++++.|...|++.+..++=.|+..+..++...+ ..++ ..+|...+.++.+-+++..-..++-+|..|+...=-..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 3678888888888888999999999999987654 2333 23677777877755567777889999888874311111
Q ss_pred HHHhcCChHHHHHHhc--------cCChHHHHHHHHHHHHhcCCC---ccHHHHHHhhHHHHH-H-HhC-ChhHHHHHHH
Q 002999 319 PLAAAGRFEPLINRLC--------QGSDNVQIEMAFLVGKLTLTN---SCKEHIARQCAKVLV-E-LLS-KPAGRAASLK 384 (859)
Q Consensus 319 ~i~~~G~i~~Lv~lL~--------~~~~~~~~~aa~~L~~la~~~---~~~~~i~~~gi~~Lv-~-lL~-~~~~~~~a~~ 384 (859)
... ..++|.++.-|. +....++..|+-+++.++... +.+. +.+.-.+.|+ . +.. ...++.+|..
T Consensus 416 s~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 000 013444554442 223456777776677665533 2233 2233333332 2 333 6678899888
Q ss_pred HHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHh
Q 002999 385 ALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGL 464 (859)
Q Consensus 385 aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~L 464 (859)
||-..-....| .|.=+.++...+-.....+.++...|+--....++. .+.++..|+.-
T Consensus 494 AlqE~VGR~~n---------~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y-------------~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 494 ALQENVGRQGN---------FPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGY-------------REPVFNHLLTK 551 (1133)
T ss_pred HHHHHhccCCC---------CCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhH-------------HHHHHHHHHhc
Confidence 88776544333 222223332211122233444444443222222111 23345555544
Q ss_pred -hcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002999 465 -LSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRIL 528 (859)
Q Consensus 465 -L~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~L 528 (859)
+.+.++.+++.++++|..|+.... .-...+.+++|+....+.+...|..+..+...+
T Consensus 552 Kv~HWd~~irelaa~aL~~Ls~~~p-------k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 552 KVCHWDVKIRELAAYALHKLSLTEP-------KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhH-------HhhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 667899999999999999876531 112346788888888888887776554444444
No 190
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.018 Score=58.52 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=42.3
Q ss_pred cccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC
Q 002999 76 NFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL 129 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~ 129 (859)
.-.||||+.-|.-||.++|+|.||.-||+--... + ..+||+||.++.++
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n----d-k~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN----D-KKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhc----C-CCCCceecCCCCcc
Confidence 3459999999999999999999999999977665 3 57899999998654
No 191
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.86 E-value=1.7 Score=45.19 Aligned_cols=231 Identities=13% Similarity=0.079 Sum_probs=137.9
Q ss_pred CChHHHHHHHHHHHHhcCCCcChHHH-HhcCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCCccHHHHHH--hhHHHH
Q 002999 295 ELPALSNLADEVFKKMERIEEIVQPL-AAAGRFEPLINRLCQ--GSDNVQIEMAFLVGKLTLTNSCKEHIAR--QCAKVL 369 (859)
Q Consensus 295 ~~~~~~~~a~~aL~nL~~~~~~~~~i-~~~G~i~~Lv~lL~~--~~~~~~~~aa~~L~~la~~~~~~~~i~~--~gi~~L 369 (859)
-++-.+--|..+|.+|...++.|..+ ++...-..++++++. |...+|.+..-.++-+..+...-..|.. .-+.-|
T Consensus 161 i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 161 IDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34445667788888888887777653 344455677888853 5577888888888888887766555543 335777
Q ss_pred HHHhC---ChhHHHHHHHHHHHhhCCC--cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC-------
Q 002999 370 VELLS---KPAGRAASLKALYNLSGLD--DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNP------- 437 (859)
Q Consensus 370 v~lL~---~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~------- 437 (859)
+++.+ ...+-+.+++.+.|++... .....+.-.|-+.+-++.|....=.+.+++...-.+=..|..+.
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 88877 6678888999999998733 23344444554555566665422123344333222211111110
Q ss_pred ----------Cccccc-----ccccccCccccc--chHHHHHHhhcCCChH-HHHHHHHHHHHhcc-CChhHHHHHHHHh
Q 002999 438 ----------GCWELA-----SADKLGHSMQSE--SIVSSLLGLLSGVSPQ-CQVSTLRILCGIAS-SPQAAESVATHIK 498 (859)
Q Consensus 438 ----------~~~~~~-----~~~~~~~~l~~~--~~i~~Ll~LL~~~~~~-~~~~a~~aL~~La~-~~~~~~~~~~~i~ 498 (859)
-.|... .-+.+...+... ..+..|.++++...+. ...-|+.=+..+.+ .| +....+.
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P----E~~~vl~ 396 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP----EINAVLS 396 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc----hHHHHHH
Confidence 011100 000111122211 3567788888776664 22223333333333 34 3356677
Q ss_pred hCCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 499 SGDGIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 499 ~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
..||=+.+..++++++++++..|+.++..+.
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 8899999999999999999999999887663
No 192
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=2.3 Score=49.22 Aligned_cols=232 Identities=14% Similarity=0.102 Sum_probs=134.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHH-HH
Q 002999 294 LELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLV-EL 372 (859)
Q Consensus 294 ~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv-~l 372 (859)
++|+-++-..++.|+.|= + ..++ ...+|.+.+.|.+.+.=++.+|.-++..+-... ..+.-. +|.|+ ..
T Consensus 110 HPNEyiRG~TLRFLckLk---E--~ELl-epl~p~IracleHrhsYVRrNAilaifsIyk~~---~~L~pD-apeLi~~f 179 (948)
T KOG1058|consen 110 HPNEYIRGSTLRFLCKLK---E--PELL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHLIPD-APELIESF 179 (948)
T ss_pred CchHhhcchhhhhhhhcC---c--HHHh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhhcCC-hHHHHHHH
Confidence 455555555554444441 1 0111 125666677788888889999887776543320 011111 23333 34
Q ss_pred hC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCccccccccccc
Q 002999 373 LS---KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLG 449 (859)
Q Consensus 373 L~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~ 449 (859)
|. ++.++++|.-.|... ++ ..++..|......-++-+..++-.....+...|...+..
T Consensus 180 L~~e~DpsCkRNAFi~L~~~---D~-------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~--------- 240 (948)
T KOG1058|consen 180 LLTEQDPSCKRNAFLMLFTT---DP-------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE--------- 240 (948)
T ss_pred HHhccCchhHHHHHHHHHhc---CH-------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH---------
Confidence 43 888898887666554 11 122333433333222233455556666666666644332
Q ss_pred CcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcC-CChhHHHHHHHHHHHH
Q 002999 450 HSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEH-PEVEHRTYAFRLTRIL 528 (859)
Q Consensus 450 ~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~~L~~L 528 (859)
....|.-+..+|.+.++.+.-.|+.+|..|+..|... +. +...+++++.. ++..++.--+--|..+
T Consensus 241 ----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~al---k~------Aa~~~i~l~~kesdnnvklIvldrl~~l 307 (948)
T KOG1058|consen 241 ----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTAL---KA------AASTYIDLLVKESDNNVKLIVLDRLSEL 307 (948)
T ss_pred ----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHH---HH------HHHHHHHHHHhccCcchhhhhHHHHHHH
Confidence 2456888999999999999999999999998887542 21 34566666533 3445554444444444
Q ss_pred hhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 529 SERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 529 s~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
. ...+.+.+ |.+--.+++|.+++- +++.-+..+.-.|..
T Consensus 308 ~-----~~~~~il~-~l~mDvLrvLss~dl--dvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 308 K-----ALHEKILQ-GLIMDVLRVLSSPDL--DVRSKTLDIALDLVS 346 (948)
T ss_pred h-----hhhHHHHH-HHHHHHHHHcCcccc--cHHHHHHHHHHhhhh
Confidence 3 11123333 566778899998887 888877776666654
No 193
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.74 E-value=0.041 Score=36.50 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=26.1
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 642 LMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 642 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
++|.|+++++++ +++||..|+.+|+.+++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 479999999997 999999999999998753
No 194
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.71 E-value=0.094 Score=45.49 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=52.4
Q ss_pred CCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHh
Q 002999 726 NCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLR 802 (859)
Q Consensus 726 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~ 802 (859)
..++|++.++.++|..|+.+|.++|++++.. . ++...-.-....+.|.+++.+ +++.+|. ++..|.++++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~----~~~~l~~f~~IF~~L~kl~~D-~d~~Vr~-~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKV-A----RGEILPYFNEIFDALCKLSAD-PDENVRS-AAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHcC-CchhHHH-HHHHHHHHhc
Confidence 4699999999999999999999999999965 1 111111224566778888874 7778766 6678887763
No 195
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.61 E-value=13 Score=44.27 Aligned_cols=166 Identities=13% Similarity=0.145 Sum_probs=120.9
Q ss_pred hcCCCHHHHHHHHH-HHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChH
Q 002999 249 LIGNSEKEKEYAVK-LLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFE 327 (859)
Q Consensus 249 L~~~~~~~~~~A~~-~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~ 327 (859)
|.+++...+..|+. +|..|+.+++. .-..+.+++... +.|.++++-.-.-|.+.+........+ +++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm-------ssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lL----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM-------SSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALL----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHH----HHH
Confidence 55555656666654 66777777662 225677777777 889999888888888888655432222 467
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcH
Q 002999 328 PLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALL 405 (859)
Q Consensus 328 ~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i 405 (859)
.+.+=+++.++.+|..|.++++.+=. ..+....++++.+++. ++.+++.|+-|+.++=. -.+....+.|.+
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~-----~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~ 168 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV-----KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLI 168 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHH
Confidence 78888899999999999998875422 1233445688888998 88999999999999953 344556678888
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 002999 406 PALTDILFKSHDASPELKELAAATIANVVSN 436 (859)
Q Consensus 406 ~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~ 436 (859)
..+..++.. .++.+..+|+.+|..+...
T Consensus 169 ~~l~~l~~D---~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVAD---SDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhC---CCchHHHHHHHHHHHhchh
Confidence 888888854 5678999999999977544
No 196
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.57 E-value=1.8 Score=46.59 Aligned_cols=207 Identities=15% Similarity=0.178 Sum_probs=113.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc-HHH
Q 002999 458 VSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIG-QDL 536 (859)
Q Consensus 458 i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~-~~~ 536 (859)
+...+..+.......++.++..|.++.......+.+... ..-.+..+.+.++.+..+-+..|++++..++-..+ ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~--~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR--RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 344455566677899999999998887654332222211 12246777888888877767778887777762211 122
Q ss_pred HHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHH---HhcCCcHH-HHHHHHhccHH--HHHHHHhhhcccccCCCCCC
Q 002999 537 AYALKPFDKLVLFKDKILDNQSANCERSDAACILA---NIQLSEEE-VKTLLEATFIK--WIVITLQTHKSSFNTRSSRP 610 (859)
Q Consensus 537 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~---~L~~~~~~-~~~l~~~g~v~--~L~~lL~~~~~~~~~r~~~~ 610 (859)
.+.+.+ ...|.|.+++.++......+..++.+|+ .++..+.. ...+++ .+. +....++........ ....
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~-~~~~ 198 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVV-AAED 198 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccc-cCCC
Confidence 234443 5778999999987653355555554444 44443322 121111 111 111112211100000 1112
Q ss_pred cchhHHhhhhhhhhcccCCCh-hhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhc
Q 002999 611 ISNIAEGLLGLLLHFTRSVNP-QTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAG 673 (859)
Q Consensus 611 ~~~~~e~~~~~L~~~~~~~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~ 673 (859)
...+...++.++.-+...-+. .+...+ ...+|.|+.+|.++ +..||..|..+|+-+....
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSD-DVDVRIAAGEAIALLYELA 259 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence 233444444444333322222 233222 34589999999996 9999999999999776543
No 197
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.50 E-value=5.6 Score=43.06 Aligned_cols=214 Identities=13% Similarity=0.110 Sum_probs=147.5
Q ss_pred HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC-ccHH-----HHHHhhHHHHHHHhC---ChhHHHHHHHHHHH
Q 002999 318 QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN-SCKE-----HIARQCAKVLVELLS---KPAGRAASLKALYN 388 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~-~~~~-----~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~ 388 (859)
..+.+.+.+..|+..|..-+-+.+..++....++.... +++. .+....-..|..+++ ++++.-.+-..|+.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 45667788999999999999999999999888886643 2222 222221233334444 88888888888999
Q ss_pred hhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccc--cchHHHHHHhhc
Q 002999 389 LSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQS--ESIVSSLLGLLS 466 (859)
Q Consensus 389 Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~~~i~~Ll~LL~ 466 (859)
+..++.-.+.+.....+..+...+.. +..++...|..++..+-......... .+.. ..++..+-.||.
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~---~~Fdiasdaf~t~~~llt~hk~~~a~-------fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQL---PNFDIASDAFSTFKELLTRHKKLVAE-------FLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTS---SSHHHHHHHHHHHHHHHHSSHHHHHH-------HHHHTHHHHHHHHHHHCT
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcC---CccHhHHHHHHHHHHHHhccHHHHHH-------HHHHHHHHHHHHHHHHcc
Confidence 98887777788888888888888754 66889999999998865543221110 1111 235667778899
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHh--hhccHHHHHhcC
Q 002999 467 GVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILS--ERIGQDLAYALK 541 (859)
Q Consensus 467 ~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls--~~~~~~~~~~l~ 541 (859)
+++--.+.+++..|..+-.++.+..-+...|.+..-+..+..+|++.+..+|..|-..+..+. +..++.+.+-+.
T Consensus 220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~ 296 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILI 296 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHH
T ss_pred CCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 999999999999999998887665444566666677788888999999999999998888876 334445544444
No 198
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.47 E-value=0.1 Score=46.59 Aligned_cols=72 Identities=17% Similarity=0.351 Sum_probs=61.5
Q ss_pred CCchHHHhhh-ccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHh
Q 002999 726 NCIKPLVDLL-AEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLR 802 (859)
Q Consensus 726 g~i~~Lv~lL-~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~ 802 (859)
..+..|+++| .+.|+.+...|+.=|+.++.. ...|...+.+.|+=..+.+++. |+|++++..|+-+++++..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~----~p~gr~ii~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH----YPNGRNIIEKLGAKERVMELMN-HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHH----ChhHHHHHHhcChHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 4688999999 567889999999999999976 2368888888898888999998 7999999999999999874
No 199
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.39 E-value=0.24 Score=57.52 Aligned_cols=224 Identities=14% Similarity=0.152 Sum_probs=145.0
Q ss_pred CCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHH-HhcCCCccHHHHHHhhHHHHHHHhC-ChhHH--HHHHHHHH
Q 002999 312 RIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVG-KLTLTNSCKEHIARQCAKVLVELLS-KPAGR--AASLKALY 387 (859)
Q Consensus 312 ~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~-~la~~~~~~~~i~~~gi~~Lv~lL~-~~~~~--~~a~~aL~ 387 (859)
....-+...++.|+...|+.+.....+..+..+..+|. .+....+. ....++++...+. +.... -.++.+|.
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 34455677888999999999998888888888888887 22221110 0112345555555 33333 34889999
Q ss_pred HhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccc-cchHHHHHHhh
Q 002999 388 NLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQS-ESIVSSLLGLL 465 (859)
Q Consensus 388 ~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~-~~~i~~Ll~LL 465 (859)
||++.+ ..+..+...-+++.+-.++. +.++..+..++..+.||..++.....+ +.. ....+....++
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~---ee~~~lqraa~e~~~NLl~~~~~~e~s--------i~e~~~~l~~w~~~~ 636 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMT---EENPALQRAALESIINLLWSPLLYERS--------IVEYKDRLKLWNLNL 636 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhh---cccHHHHHHHHHHHHHHHhhHHHHHHH--------hhccccCchHHHHHH
Confidence 999987 45777887766666555553 356789999999999999887655543 222 23344444444
Q ss_pred cCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCc
Q 002999 466 SGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDK 545 (859)
Q Consensus 466 ~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~ 545 (859)
..........++.++..++.-..+.-. ....-..+...++.++.+.+.+++...+....++. ..+.++.+.+.....
T Consensus 637 e~~~E~~~lA~a~a~a~I~sv~~n~c~--~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~~~~~~ 713 (748)
T KOG4151|consen 637 EVADEKFELAGAGALAAITSVVENHCS--RILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKIFETEV 713 (748)
T ss_pred HhhhhHHhhhccccccchhhcchhhhh--hHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHhccchH
Confidence 444445555566666544443222111 12223468889999999999999987777777765 666778888887766
Q ss_pred hHHHHHhh
Q 002999 546 LVLFKDKI 553 (859)
Q Consensus 546 i~~Lv~lL 553 (859)
++.+.++=
T Consensus 714 ~~~l~~~~ 721 (748)
T KOG4151|consen 714 MELLSGLQ 721 (748)
T ss_pred HHHHHHHH
Confidence 66665543
No 200
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.026 Score=60.02 Aligned_cols=42 Identities=24% Similarity=0.607 Sum_probs=36.2
Q ss_pred ccCcccccccCC---CeecCCCchhcHHHHHHHHHhcccCC-CCCCCCCC
Q 002999 77 FLCPLTKQVMKE---PVVLESAQAYERKAIEYWFERCLEDG-RDPTCPVT 122 (859)
Q Consensus 77 ~~cpi~~~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~-~~~~cP~t 122 (859)
|.|||..+--.| |+.+.|||..+|.+|.+.... | .+..||.|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n----g~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN----GSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhC----CCeeeeCCCC
Confidence 899999999887 999999999999999998876 4 13678877
No 201
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.37 E-value=0.62 Score=50.84 Aligned_cols=301 Identities=13% Similarity=0.069 Sum_probs=155.7
Q ss_pred ccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC------cchHHHHHhh
Q 002999 166 EVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD------EESKKIMLEE 239 (859)
Q Consensus 166 ~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~------~~~r~~i~~~ 239 (859)
...++ +++..|+.++..-.-.|..+. .+.+....+-.+....++.++..+|..+... ++..+.-...
T Consensus 269 s~~rl-e~~qvl~~~a~~~~~~~~~~~------~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~ 341 (728)
T KOG4535|consen 269 SPMRL-EALQVLTLLARYFSMTQAYLM------ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQR 341 (728)
T ss_pred chhHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhh
Confidence 34455 488888777653222222222 2223332222222238999999888877432 2221111111
Q ss_pred CchHHH------HHHh-cCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc---CCCChHHHHHHHHHHHH
Q 002999 240 GVTKSV------IHSL-IGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG---NLELPALSNLADEVFKK 309 (859)
Q Consensus 240 g~i~~L------v~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~a~~aL~n 309 (859)
|.+..+ -..+ .+..+..+..++.++.+++..+-..- ..|-=..+..++. ++++.-++..|.+++.-
T Consensus 342 ~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l----pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~V 417 (728)
T KOG4535|consen 342 APFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNL----PNDRQTLCITFLLGCNDSKNRLVKAAASRALGV 417 (728)
T ss_pred ccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC----CCcchhhhHHHHhcccchHHHHHHHHHHhhcee
Confidence 111111 0111 12223455667777777765432110 0111111222222 12333344555666555
Q ss_pred hcCCCcChH-HHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcC----CCcc-HHHHHHhhHHHHHHHhC--------C
Q 002999 310 MERIEEIVQ-PLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTL----TNSC-KEHIARQCAKVLVELLS--------K 375 (859)
Q Consensus 310 L~~~~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~----~~~~-~~~i~~~gi~~Lv~lL~--------~ 375 (859)
+..++..+. ...-..+...+...|.+..-..++.++++++|+.. +-.+ +.+-.+..+..|.++++ +
T Consensus 418 yVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~ 497 (728)
T KOG4535|consen 418 YVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADK 497 (728)
T ss_pred EEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 555665543 33344556666677777777889999999999853 1122 22222212233333333 5
Q ss_pred hhHHHHHHHHHHHhhCCCc----chHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCc
Q 002999 376 PAGRAASLKALYNLSGLDD----NATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHS 451 (859)
Q Consensus 376 ~~~~~~a~~aL~~Ls~~~~----~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 451 (859)
..++.++.++|.|++-.-+ ..-.....|.+..++.-. .......++-+++.++.||..+..-.-. ..
T Consensus 498 dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v--~~~~~~kV~WNaCya~gNLfkn~a~~lq-------~~ 568 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTV--LTEAAMKVRWNACYAMGNLFKNPALPLQ-------TA 568 (728)
T ss_pred hhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccce--ecccccccchHHHHHHHHhhcCcccccc-------CC
Confidence 6789999999999974321 011112223333333222 1234578999999999999988754211 01
Q ss_pred ccccchHHHHHHhhcCC-ChHHHHHHHHHHHHhccC
Q 002999 452 MQSESIVSSLLGLLSGV-SPQCQVSTLRILCGIASS 486 (859)
Q Consensus 452 l~~~~~i~~Ll~LL~~~-~~~~~~~a~~aL~~La~~ 486 (859)
-....+.+.|..|+.+. +-.++.+|+.+|.--...
T Consensus 569 ~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 569 PWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred CchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 23344677777777553 447888899888877654
No 202
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.36 E-value=1.7 Score=44.42 Aligned_cols=181 Identities=17% Similarity=0.192 Sum_probs=116.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC-----hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHH
Q 002999 474 VSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE-----VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVL 548 (859)
Q Consensus 474 ~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~ 548 (859)
.+++..|..+|++++. +..+.++...-.|..+|+..+ +.+|..++..++.|....+.++...+..++.+|.
T Consensus 68 cnaLaLlQ~vAshpet----r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 68 CNALALLQCVASHPET----RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHH-TTT----HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHcChHH----HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 4567777888999876 456677777777888886554 3578889999999997778888899999999999
Q ss_pred HHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHH-hccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhccc
Q 002999 549 FKDKILDNQSANCERSDAACILANIQLSEEEVKTLLE-ATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTR 627 (859)
Q Consensus 549 Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~-~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~ 627 (859)
.++.++.++. -.+..|..++..+-.++..+.-+.+ ..-+-++...|...-..-. ..+...+.+-++.+..+++.
T Consensus 144 cLr~me~Gse--lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~---~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 144 CLRIMEFGSE--LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLV---KQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHHS-H--HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHH---HS--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccH--HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHcc
Confidence 9999999876 6788999999999888877744433 2323333333332110000 01233467888888888874
Q ss_pred CCChhhHHHHHhcCchHH------HHHhhcCCChHHHHHHHHHHhhhh
Q 002999 628 SVNPQTLGMVREQRLMTI------FRDQLSFPSKARVKQLAAHGLKNL 669 (859)
Q Consensus 628 ~~~~~~~~~i~~~~~i~~------Lv~lL~~~~~~~vk~~Aa~aL~~l 669 (859)
|+..+..+.. .+|. +..++++ ++.+|+.-..-+.|+
T Consensus 219 --nprar~aL~~--~LP~~Lrd~~f~~~l~~--D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 219 --NPRAREALRQ--CLPDQLRDGTFSNILKD--DPSTKRWLQQLLSNL 260 (262)
T ss_dssp --STTHHHHHHH--HS-GGGTSSTTTTGGCS---HHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHH--hCcHHHhcHHHHHHHhc--CHHHHHHHHHHHHHh
Confidence 7887777653 4442 2233332 677777766655554
No 203
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.019 Score=58.97 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=40.6
Q ss_pred CcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 75 KNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+.=.||+|..--.+|-++ .||..||..||-.+... +..||+|+-|..
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~------~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN------YGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHh------cCCCCccCCcch
Confidence 456799999999988766 67999999999999987 789999987754
No 204
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.35 E-value=0.019 Score=60.69 Aligned_cols=34 Identities=15% Similarity=0.415 Sum_probs=30.2
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHH
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFE 108 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~ 108 (859)
+++.||||+..++||++++|||+.||.|-..-+-
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 5699999999999999999999999999775443
No 205
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.029 Score=56.32 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=40.6
Q ss_pred CcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 75 KNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
.+..||+|++--.-|.+. +|||.||..||..-+.- ....+||.|+++..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~----~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLW----DASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcc----hhhcccCccCCCCc
Confidence 357899999999999976 69999999999988765 22579999987653
No 206
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.31 E-value=0.23 Score=49.01 Aligned_cols=109 Identities=12% Similarity=0.034 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHhccChhhhhHhhh---------------hhChHHHHHHhhcC-----CCChHHHHHHHHHHHHhcC
Q 002999 253 SEKEKEYAVKLLLEFCIDEAYCKSVAS---------------EKGALVLLSSMTGN-----LELPALSNLADEVFKKMER 312 (859)
Q Consensus 253 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~---------------~~g~i~~Lv~lL~~-----~~~~~~~~~a~~aL~nL~~ 312 (859)
.......++.+|.||+..++.+..+.. ....+..|+.++.. .....-....+.+|.|+++
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344567788899999988776653321 12367777777662 1233456788999999999
Q ss_pred CCcChHHHHhc--CC--hHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHH
Q 002999 313 IEEIVQPLAAA--GR--FEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHI 361 (859)
Q Consensus 313 ~~~~~~~i~~~--G~--i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i 361 (859)
.++.|..+.+. +. +..|+.++.+.+..-+.-++.+|.|+|.+.+....+
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~L 140 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWL 140 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHh
Confidence 99999998865 34 667777777777777777788888888877665554
No 207
>PRK14707 hypothetical protein; Provisional
Probab=94.17 E-value=26 Score=45.93 Aligned_cols=389 Identities=14% Similarity=0.079 Sum_probs=191.6
Q ss_pred hhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcC--CCCcchHHHHHHHHHHHhcccCcchHHH
Q 002999 158 ETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSS--SKSVGTILRSKALMALLSMAKDEESKKI 235 (859)
Q Consensus 158 ~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~~~~~al~~L~~L~~~~~~r~~ 235 (859)
..+++. ++...+.+|...|...+...+..+..+. .--|..++...+.- +. +.+..+...-..++.++..+..
T Consensus 128 n~~sk~-~~~~~c~~a~a~i~~~~~~~~~~~~~l~-~~~~~lllNafSKw~~~~----~c~~aa~~la~~~~~~d~~~~~ 201 (2710)
T PRK14707 128 NAFSKN-LDSGRCERAVARLARHLRREDKARQTLN-AQNISLALNAFSKWSDNP----DCQAVAPRFAALVASDDRLRSA 201 (2710)
T ss_pred HHHhcC-CCchHHHHHHHHHHHHhccccchhhhhc-cccHHHHHHHhhcCCCCc----hHHHHHHHHHHHhcCChhhhcc
Confidence 334443 3344556676666665543322222111 11244555555432 33 5666666666667777766666
Q ss_pred HHhhCchHHHHHHhcC-CCHHHHHHHHHHHH-HhccChhhhhHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcC
Q 002999 236 MLEEGVTKSVIHSLIG-NSEKEKEYAVKLLL-EFCIDEAYCKSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKMER 312 (859)
Q Consensus 236 i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~-~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~ 312 (859)
+ ...+|..++..++. ++......|+..|. .|+.++..+..+- ...+...+..|+ ..+++.+...+..+-..|..
T Consensus 202 ~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~--~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~ 278 (2710)
T PRK14707 202 M-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELK--PQELGNALNALSKWADTPVCAAAASALAERLVD 278 (2710)
T ss_pred c-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCC--hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 6 44456666655543 44334445555555 5666655555552 344555555555 34444444444444344443
Q ss_pred CCcChHHHHhcCChHHHHHHhc-cCChHHHHHHHHHHHH-hcCCCccHHHHHHhhHHHHHHHhC----ChhHHHHHHHHH
Q 002999 313 IEEIVQPLAAAGRFEPLINRLC-QGSDNVQIEMAFLVGK-LTLTNSCKEHIARQCAKVLVELLS----KPAGRAASLKAL 386 (859)
Q Consensus 313 ~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~-la~~~~~~~~i~~~gi~~Lv~lL~----~~~~~~~a~~aL 386 (859)
+..-+..| +.-.+.-.++-|+ -.+..+...++..|+. |..+.+-+..+...++...+.-|+ +..+.+.|...-
T Consensus 279 ~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA 357 (2710)
T PRK14707 279 DPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALA 357 (2710)
T ss_pred hHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence 33333333 2223333444443 3445555566665544 454445566666667766666666 566666666666
Q ss_pred HHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhc
Q 002999 387 YNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLS 466 (859)
Q Consensus 387 ~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~ 466 (859)
..|+.+++-++.+- ..++...+..|..- ++......|+..|+.=...+..... .+ +...|...+.-|+
T Consensus 358 ~rl~~d~~l~~~l~-~q~~a~~lNalsKW--p~~~~c~~aa~~LA~~l~~d~~l~~--------~~-~~Q~van~lnals 425 (2710)
T PRK14707 358 ERLVADPELRKDLE-PQGVSSVLNALSKW--PDTPVCAAAASALAEHVVDDLELRK--------GL-DPQGVSNALNALA 425 (2710)
T ss_pred HHhccCHhhhcccc-hhHHHHHHhhhhcC--CCchHHHHHHHHHHHHhccChhhhh--------hc-chhhHHHHHHHhh
Confidence 66666656665554 33445555566543 3345556666666543333333221 23 3444555555554
Q ss_pred C-CChHHHHHHHHHHHH-hccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHH-HHHHHHHHHHhhhccHHHHHhcCCC
Q 002999 467 G-VSPQCQVSTLRILCG-IASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHR-TYAFRLTRILSERIGQDLAYALKPF 543 (859)
Q Consensus 467 ~-~~~~~~~~a~~aL~~-La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~-~~A~~~L~~Ls~~~~~~~~~~l~~~ 543 (859)
. ++..+-..++..|.. ++.+. ++++.+--.+....|--+-+-++..+- ..|-.+...|+ ...+.++.+...
T Consensus 426 KWPd~~~C~~aa~~lA~~la~d~----~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~--~~~~l~~a~~~q 499 (2710)
T PRK14707 426 KWPDLPICGQAVSALAGRLAHDT----ELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA--HERRLRKALKPQ 499 (2710)
T ss_pred cCCcchhHHHHHHHHHHHHhccH----HHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc--ccHHHHhhcCHH
Confidence 4 344555556666643 34432 333333222222223223344444433 33333444553 344556666554
Q ss_pred CchHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 544 DKLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 544 g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
+....|-.+-+-++. ..-..++.++-+.+..
T Consensus 500 ~~~~~L~aLSK~Pd~-~~c~~A~~~lA~rl~~ 530 (2710)
T PRK14707 500 EVVIALHSLSKWPDT-PICAEAASALAERVVD 530 (2710)
T ss_pred HHHHHHHHhhcCCCc-HHHHHHHHHHHHHhcc
Confidence 455555555555554 2333444455555553
No 208
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.99 E-value=0.92 Score=46.39 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=111.6
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCc-chHHHHHHHHHHHhcccC--cchHHHHHhhCchHH
Q 002999 168 DGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSV-GTILRSKALMALLSMAKD--EESKKIMLEEGVTKS 244 (859)
Q Consensus 168 ~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~-~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~ 244 (859)
.++..|+.-|+.++. +++-|..+.++...-.|-.+|+..+... -+.+|..++++++.|.+. .+.-..+.....+|.
T Consensus 65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 456678999999987 7888999999988777788887665432 126788999999999885 555667788999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhh-------hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh
Q 002999 245 VIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVAS-------EKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV 317 (859)
Q Consensus 245 Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~-------~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~ 317 (859)
-++.+..|+.-.+..|..++..+-.++.--.-+.. -..++..+|.-+....++.+.+....+-..|+.++..+
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar 223 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR 223 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence 99999999988898999999988877643332222 22344445544444678888999999999999999888
Q ss_pred HHHHh
Q 002999 318 QPLAA 322 (859)
Q Consensus 318 ~~i~~ 322 (859)
..+..
T Consensus 224 ~aL~~ 228 (262)
T PF04078_consen 224 EALRQ 228 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 209
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.88 E-value=8.4 Score=46.55 Aligned_cols=242 Identities=17% Similarity=0.175 Sum_probs=136.2
Q ss_pred HHHhcCcHHHHHHHHhcCCC-CcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhc----CCC----HHHHHHH
Q 002999 190 RVRNAGVVLLIVKLLKSSSK-SVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLI----GNS----EKEKEYA 260 (859)
Q Consensus 190 ~i~~~g~i~~Lv~lL~~~~~-~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~----~~~----~~~~~~A 260 (859)
.+.+.|++..++.++.+-.. ..+.......+..|...+.-+.||+.+.+.|+++.|++.|. .+. .+..+.-
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 56778999999999976321 11225666667777777777999999999999999999885 323 4555555
Q ss_pred HHHHHHhccChh---hhhHh--hh-------hhChHHHHHHhhc---CCCChHHHHHHHHHHHHhcCCCcCh-HHHHhcC
Q 002999 261 VKLLLEFCIDEA---YCKSV--AS-------EKGALVLLSSMTG---NLELPALSNLADEVFKKMERIEEIV-QPLAAAG 324 (859)
Q Consensus 261 ~~~L~~Ls~~~~---~~~~i--~~-------~~g~i~~Lv~lL~---~~~~~~~~~~a~~aL~nL~~~~~~~-~~i~~~G 324 (859)
..++..+..... ..... .. ...-+..|.+.+. ...++.+....+.+|-+|+..++.. ..+++
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-- 269 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-- 269 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--
Confidence 555555443211 11000 00 1123566666665 1246788888899999999765543 33333
Q ss_pred ChHHHHHHhc---cCChHHHHHHHHHHHHhcC---CCc----cHHHHHHhhH-HHHHHHhC----------Chh------
Q 002999 325 RFEPLINRLC---QGSDNVQIEMAFLVGKLTL---TNS----CKEHIARQCA-KVLVELLS----------KPA------ 377 (859)
Q Consensus 325 ~i~~Lv~lL~---~~~~~~~~~aa~~L~~la~---~~~----~~~~i~~~gi-~~Lv~lL~----------~~~------ 377 (859)
.+.+.+++=. +..++-+ .....+..++. .+. -|..|.+.|+ ...++.|. +++
T Consensus 270 ~F~p~l~f~~~D~~~~~~~~-~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 270 HFKPYLDFDKFDEEHSPDEQ-FKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHHHhcChhhcccccCchHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 1222222111 1111111 12333333332 222 2667777665 66666554 222
Q ss_pred --HHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 002999 378 --GRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSN 436 (859)
Q Consensus 378 --~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~ 436 (859)
....+++.|..|+.++...+.++..+++ +++..|...+ ....+-.-|-.+|..|+.+
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvs-s~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVS-SEEHIGSLAENLLEALAEN 407 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCC-CccchHHHHHHHHHHHhcC
Confidence 3345888899999888655556777777 5555555422 1233444444445544443
No 210
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.77 E-value=0.41 Score=49.21 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhc-CCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHh
Q 002999 172 KALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKS-SSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSL 249 (859)
Q Consensus 172 ~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL 249 (859)
.||+.|+-+|--++..|..+.....+..++++|.. ..+ .++..++.+|..+..+ +.|.+.+-+.+++..++.++
T Consensus 110 ~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~----~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 110 LALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPP----AIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCc----hHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 48999999999999999999999999999999944 445 8999999988877666 88999999999999999999
Q ss_pred cCCC--HHHHHHHHHHHHHhcc
Q 002999 250 IGNS--EKEKEYAVKLLLEFCI 269 (859)
Q Consensus 250 ~~~~--~~~~~~A~~~L~~Ls~ 269 (859)
++.+ .+++-..+..|+-+..
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 8754 5667777777665433
No 211
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=14 Score=44.43 Aligned_cols=470 Identities=16% Similarity=0.100 Sum_probs=231.2
Q ss_pred CCChHHHHHHHHHHHHhc-CCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcC---CCccHHHHHHhhHHHH
Q 002999 294 LELPALSNLADEVFKKME-RIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTL---TNSCKEHIARQCAKVL 369 (859)
Q Consensus 294 ~~~~~~~~~a~~aL~nL~-~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~---~~~~~~~i~~~gi~~L 369 (859)
+++.+.+...+..+..+- .+++|-...-+.--+|.||.-+...+..++......|---.. .-..++. -.|
T Consensus 478 aenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqEL------lSL 551 (2799)
T KOG1788|consen 478 AENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQEL------LSL 551 (2799)
T ss_pred hcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHH------HHH
Confidence 566666666666666664 567887777778888888888877776666555544332111 0111221 233
Q ss_pred HHHhC---ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccC---CCCHHHHHHHHHHHHHhhcCCCcccc
Q 002999 370 VELLS---KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSH---DASPELKELAAATIANVVSNPGCWEL 442 (859)
Q Consensus 370 v~lL~---~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~---~~~~~~~~~a~~~L~nL~~~~~~~~~ 442 (859)
.-+|+ +...+..-+.....|-+.+ ..++.+.+-|+++.|-..++.+. .++ . -.++-. ....++....
T Consensus 552 CvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-q----ysgvse-hydrnpss~s 625 (2799)
T KOG1788|consen 552 CVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-Q----YSGVSE-HYDRNPSSPS 625 (2799)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-h----hhhHHH-HhhcCCCCch
Confidence 44555 4444444444445555555 67888999999999988886521 111 0 000000 0011111000
Q ss_pred cccccccCcccccchHHHHHHhhcCCCh--HHHHH------HHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC
Q 002999 443 ASADKLGHSMQSESIVSSLLGLLSGVSP--QCQVS------TLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE 514 (859)
Q Consensus 443 ~~~~~~~~~l~~~~~i~~Ll~LL~~~~~--~~~~~------a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 514 (859)
+. +-+-....+-.--.+..+++. .+.+. ...+|..+-.++.. ..+.++++.|+..++.++ -+
T Consensus 626 f~-----~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnte---NqklFreanGvklilpfl--in 695 (2799)
T KOG1788|consen 626 FK-----QHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTE---NQKLFREANGVKLILPFL--IN 695 (2799)
T ss_pred hh-----hccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccch---hhHHHHhhcCceEEEEee--ec
Confidence 00 001111111100111222111 12211 12345555555432 256688999999999988 44
Q ss_pred hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCC----------chhHHHHHHHHHHHhcCCcHHH-HHH
Q 002999 515 VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQS----------ANCERSDAACILANIQLSEEEV-KTL 583 (859)
Q Consensus 515 ~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~----------~~~~~~~A~~~L~~L~~~~~~~-~~l 583 (859)
++.|..-++++.+|.-..+.. + ....+..||..|+++-. ......+.+|++..+..-|... +.+
T Consensus 696 dehRSslLrivscLitvdpkq----v-hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvF 770 (2799)
T KOG1788|consen 696 DEHRSSLLRIVSCLITVDPKQ----V-HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVF 770 (2799)
T ss_pred hHHHHHHHHHHHHHhccCccc----c-cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeeh
Confidence 566666677777775212111 1 11356778888887422 0112235567777765434333 788
Q ss_pred HHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhccc---CCChhhHHHHHhcCchHHHHHhhcCCC--hHHH
Q 002999 584 LEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTR---SVNPQTLGMVREQRLMTIFRDQLSFPS--KARV 658 (859)
Q Consensus 584 ~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~---~~~~~~~~~i~~~~~i~~Lv~lL~~~~--~~~v 658 (859)
.+++|+..|..+|.....-+.. ......++.-.....|.++.. ..|+.++..+...=.-..+.+||..+| ....
T Consensus 771 geatGFslLlttLhtfqgftel-hdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnl 849 (2799)
T KOG1788|consen 771 GEATGFSLLLTTLHTFQGFTEL-HDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNL 849 (2799)
T ss_pred hccccHHHHHHHHHHhccchhc-CCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecc
Confidence 8899999999998876542110 000011111222333333211 022222222111111122333333321 0001
Q ss_pred HHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccC
Q 002999 659 KQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEE 738 (859)
Q Consensus 659 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 738 (859)
-++....|..+. ++. |-.+
T Consensus 850 er~viqlllEla---------------------------------------------------------lev----lvpp 868 (2799)
T KOG1788|consen 850 ERHVIQLLLELA---------------------------------------------------------LEV----LVPP 868 (2799)
T ss_pred hHHHHHHHHHHH---------------------------------------------------------HHh----hCCc
Confidence 111111111110 000 1111
Q ss_pred ChhHHHHHHHHHHhhhhc-----c-CcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcccccccccc
Q 002999 739 DTNVEIAAVEALSTLIID-----T-SKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSL 812 (859)
Q Consensus 739 ~~~v~~~A~~aL~~L~~d-----~-~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~ 812 (859)
+-.--.+|+..+..+-.+ + +-.+.+..+.|..+|++..|++.+. ...+.+|-.-...++...|+.......-.
T Consensus 869 fLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslL-lnypK~qlefl~lleSlaRaspfnaellt 947 (2799)
T KOG1788|consen 869 FLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLL-LNYPKLQLEFLNLLESLARASPFNAELLT 947 (2799)
T ss_pred hhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHH-hhChHHHHHHHHHHHHHhhcCCCchhhhh
Confidence 111112222222222211 0 0001233677999999999999887 37788999899999999987654443333
Q ss_pred chhhH---HHHHHHhhcCChhhHHHHHHHHHHHhhhcCCcCccc
Q 002999 813 NQSLV---RALVEAFKHGNANAKRHAQEALTNLKQISGLSGKAS 853 (859)
Q Consensus 813 ~~~~~---~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 853 (859)
..+-+ ..+|.-+-+|++-.-..|.++..-|.-++..++..+
T Consensus 948 S~gcvellleIiypflsgsspfLshalkIvemLgayrlspsels 991 (2799)
T KOG1788|consen 948 SAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAYRLSPSELS 991 (2799)
T ss_pred cccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhccCCcHHHH
Confidence 32222 334555677887788888888888777766554443
No 212
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.52 E-value=16 Score=41.23 Aligned_cols=352 Identities=14% Similarity=0.073 Sum_probs=186.1
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCC-CHHHHHHHHHHHHHhccChhhhh-
Q 002999 198 LLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGN-SEKEKEYAVKLLLEFCIDEAYCK- 275 (859)
Q Consensus 198 ~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~- 275 (859)
|.+...|...+.+.+ ...+..+.+|..++.+...-+.+.- ..+..|-..++++ +.+.....+..|..+........
T Consensus 2 p~ll~~Lpd~~~~~~-~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTD-SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcch-hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 667777766543211 5678889999999998665444433 4444444444432 34555566666666644321111
Q ss_pred ----HhhhhhChHHHHHHhhcC----CC--ChHHHHHHHHHHHHhcCC-C-cChHHHHhcCChHHHHHHhc---------
Q 002999 276 ----SVASEKGALVLLSSMTGN----LE--LPALSNLADEVFKKMERI-E-EIVQPLAAAGRFEPLINRLC--------- 334 (859)
Q Consensus 276 ----~i~~~~g~i~~Lv~lL~~----~~--~~~~~~~a~~aL~nL~~~-~-~~~~~i~~~G~i~~Lv~lL~--------- 334 (859)
........++.+.++.-. .. ++.+...+..++..+... + +.+..+++ .+..+..
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-----~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-----ELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-----HHHHHHccccccCCCC
Confidence 122123377777777641 11 234444455554444432 2 22333322 2333222
Q ss_pred -cC------ChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCc
Q 002999 335 -QG------SDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDSAL 404 (859)
Q Consensus 335 -~~------~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~ 404 (859)
.. ......-....|..+-. +....-...-+..++.+.. ++..+..++.+|..|...-.....+ ...
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~ 230 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRK--DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEF 230 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCc--ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHH
Confidence 11 11111111222222211 1110001112345555544 6677888888888887652222211 122
Q ss_pred HHHHHHHHhc--cCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHH
Q 002999 405 LPALTDILFK--SHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCG 482 (859)
Q Consensus 405 i~~Lv~lL~~--~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~ 482 (859)
+..+..-+.. .........+...|+...|....... ....+..|+.+|++ +++...++.++.-
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~-------------~~~~~~~L~~lL~~--~~~g~~aA~~f~i 295 (415)
T PF12460_consen 231 LDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL-------------ATELLDKLLELLSS--PELGQQAAKAFGI 295 (415)
T ss_pred HHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch-------------HHHHHHHHHHHhCC--hhhHHHHHHHHhh
Confidence 2333332211 11122233444455555555544221 24567889998877 6777888888877
Q ss_pred hccC-Ch-----hHHHHHHHHhhC----CCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHh
Q 002999 483 IASS-PQ-----AAESVATHIKSG----DGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDK 552 (859)
Q Consensus 483 La~~-~~-----~~~~~~~~i~~~----g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~l 552 (859)
+..+ +. +...+ +.+.+. ..+|.|++..+..+.+.+.+.+.+|.++-.+.+..+...=.. ..+|.|++-
T Consensus 296 l~~d~~~~l~~~~~a~v-klLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~-~LlPLLlqs 373 (415)
T PF12460_consen 296 LLSDSDDVLNKENHANV-KLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELP-TLLPLLLQS 373 (415)
T ss_pred HhcCcHHhcCccccchh-hhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHHHH
Confidence 7666 11 11111 111111 356777777777777788888899999987776554322222 578999999
Q ss_pred hccCCCchhHHHHHHHHHHHhcCCcHH
Q 002999 553 ILDNQSANCERSDAACILANIQLSEEE 579 (859)
Q Consensus 553 L~~~~~~~~~~~~A~~~L~~L~~~~~~ 579 (859)
|..++. +++..+..+|..+..+++.
T Consensus 374 L~~~~~--~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 374 LSLPDA--DVLLSSLETLKMILEEAPE 398 (415)
T ss_pred hCCCCH--HHHHHHHHHHHHHHHcCHH
Confidence 988886 8899999999998876644
No 213
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.24 E-value=4.1 Score=43.78 Aligned_cols=181 Identities=18% Similarity=0.148 Sum_probs=103.3
Q ss_pred CChHHHHHHHHHHHHhcCCCcChHHHHh--cCChHHHHHHhccCChHHHHHHHHHHHHhcCC---CccHHHHHHhhHHHH
Q 002999 295 ELPALSNLADEVFKKMERIEEIVQPLAA--AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT---NSCKEHIARQCAKVL 369 (859)
Q Consensus 295 ~~~~~~~~a~~aL~nL~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~---~~~~~~i~~~gi~~L 369 (859)
.....++.++..+.++....--...+.+ .-.++.+.+.++.|..+-+..|+.+++-++.. ......+.+...|.|
T Consensus 55 K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L 134 (309)
T PF05004_consen 55 KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVL 134 (309)
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Confidence 3455556666665555533221121211 23566777888888877778888888887765 234556666677888
Q ss_pred HHHhC----ChhHHHHHHHHHHHhhCCC-cchHHHHH-cCcHHHHH--HHHhccC-------CCCHHHHHHHHHHHHHhh
Q 002999 370 VELLS----KPAGRAASLKALYNLSGLD-DNATILVD-SALLPALT--DILFKSH-------DASPELKELAAATIANVV 434 (859)
Q Consensus 370 v~lL~----~~~~~~~a~~aL~~Ls~~~-~~~~~i~~-~G~i~~Lv--~lL~~~~-------~~~~~~~~~a~~~L~nL~ 434 (859)
.+.+. ++.++..++.||.-++... ..-..+.+ ...+..+. ..++... .++..+...|+..-.-|.
T Consensus 135 ~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLl 214 (309)
T PF05004_consen 135 KRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLL 214 (309)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHH
Confidence 88887 4456666776777765432 11111110 01122111 1122111 112456777766666665
Q ss_pred cCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002999 435 SNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGI 483 (859)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~L 483 (859)
..-+.+.- .-.-+..++.|..+|.+.+.++|..|-.+|.-|
T Consensus 215 t~~~~~~~--------~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 215 TTLPDSKL--------EDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred hcCCHHHH--------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 54443221 111255789999999999999999888777665
No 214
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.06 Score=54.66 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=37.1
Q ss_pred ccCcccccccC--CCe-ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 77 FLCPLTKQVMK--EPV-VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 77 ~~cpi~~~~m~--dPv-~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
..|-||+.=+- |-+ ++||.|.|-+.||++|+.. .+..||+|+.++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~-----y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG-----YSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhh-----hcccCCccCCCCC
Confidence 56999876553 556 6799999999999999974 2678999998764
No 215
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=0.081 Score=55.19 Aligned_cols=46 Identities=22% Similarity=0.515 Sum_probs=38.9
Q ss_pred CcccCcccccccCC-------------CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 75 KNFLCPLTKQVMKE-------------PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 75 ~~~~cpi~~~~m~d-------------Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
.+=.|-||.+.|-. |--+||||.+--+|++-|+++ ..+||.||.|+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER------qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER------QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh------ccCCCcccCcc
Confidence 34679999988543 357899999999999999998 67999999885
No 216
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.97 E-value=0.13 Score=34.05 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.1
Q ss_pred chHHHhhhccCChhHHHHHHHHHHhhhh
Q 002999 728 IKPLVDLLAEEDTNVEIAAVEALSTLII 755 (859)
Q Consensus 728 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 755 (859)
++.+++++.+++++|+.+|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999874
No 217
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.94 E-value=0.1 Score=39.02 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=25.9
Q ss_pred ccCcccccccCCCe-ecCCCch--hcHHHHHHHHHhcccCCCCCCCCCCCcc
Q 002999 77 FLCPLTKQVMKEPV-VLESAQA--YERKAIEYWFERCLEDGRDPTCPVTGQV 125 (859)
Q Consensus 77 ~~cpi~~~~m~dPv-~~~~g~t--~~r~~I~~~~~~~~~~~~~~~cP~t~~~ 125 (859)
+.|||++..|+-|| -..|.|. ||-....+...+ .+ .-.||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~---~~-~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQR---TP-KWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHH---S----B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhc---cC-CeECcCCcCc
Confidence 78999999999999 5577764 787665555554 23 4689999764
No 218
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.91 E-value=3.4 Score=49.05 Aligned_cols=164 Identities=10% Similarity=0.118 Sum_probs=96.1
Q ss_pred hccCChHHHHHHHH-HHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHH
Q 002999 333 LCQGSDNVQIEMAF-LVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALT 409 (859)
Q Consensus 333 L~~~~~~~~~~aa~-~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv 409 (859)
+.+.++..+..|+. +|+.|..+++..... +-+++.+. |.++++..=-=|.+.+...+....+ ++..+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssLf-----~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSLF-----PDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHHH-----HHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHH
Confidence 44555656666554 466666655522211 22233222 6666666665566665555422111 233344
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChh
Q 002999 410 DILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQA 489 (859)
Q Consensus 410 ~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~ 489 (859)
.=+ .++++.+|-.|+.++..+=.. .+ -..+++++.+++.++++.++..|+-++..+=+-..
T Consensus 99 kDl---~d~N~~iR~~AlR~ls~l~~~--------------el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~- 159 (757)
T COG5096 99 KDL---QDPNEEIRGFALRTLSLLRVK--------------EL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK- 159 (757)
T ss_pred hhc---cCCCHHHHHHHHHHHHhcChH--------------HH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-
Confidence 444 346677777777777654111 11 24567777778888888888888888777754332
Q ss_pred HHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 490 AESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 490 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
....+.|.+..+..++.+.++.+..+|..+|..+-
T Consensus 160 -----~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 160 -----DLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred -----hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 23445667777777777888888888877777774
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.88 E-value=0.035 Score=59.53 Aligned_cols=41 Identities=17% Similarity=0.522 Sum_probs=35.6
Q ss_pred ccCcccccccCCCe----ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcc
Q 002999 77 FLCPLTKQVMKEPV----VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQV 125 (859)
Q Consensus 77 ~~cpi~~~~m~dPv----~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~ 125 (859)
-+||+|.+-|.+-| ++.|.|+|--+|+.+|+.. +||+||--
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~--------scpvcR~~ 220 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS--------SCPVCRYC 220 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhcccC--------cChhhhhh
Confidence 57999999999876 4589999999999999954 99999843
No 220
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.039 Score=54.97 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=45.3
Q ss_pred CCCcccCcccccccCCCe----------ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcch
Q 002999 73 PFKNFLCPLTKQVMKEPV----------VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPN 134 (859)
Q Consensus 73 ~~~~~~cpi~~~~m~dPv----------~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn 134 (859)
..++=.|-+|++-+.+-| .++|+|+|--.||+-|..- |+..+||.|++......+..|
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv----GKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV----GKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee----cCCCCCchHHHHhhHhhhccC
Confidence 445567999988776655 6799999999999999986 778999999887654444433
No 221
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=34 Score=42.30 Aligned_cols=233 Identities=12% Similarity=0.121 Sum_probs=129.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcChHHHHhc--CChHHHHHHhccCChHHHHHHHHHHHHhcCCC--ccHHHHHHhhHHH
Q 002999 293 NLELPALSNLADEVFKKMERIEEIVQPLAAA--GRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN--SCKEHIARQCAKV 368 (859)
Q Consensus 293 ~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~--~~~~~i~~~gi~~ 368 (859)
++.+..++..+-.+|..|+..+.......+. -....|..-+++.+...+.....+|..|-... +...++.....+.
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4568899999999999999875443322221 12333444445556666666777777665433 3344443333344
Q ss_pred HHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcC------cHHHHHHHHhccCCCCHHHHHHH--HHHHHHhhcCCC
Q 002999 369 LVELLS--KPAGRAASLKALYNLSGLDDNATILVDSA------LLPALTDILFKSHDASPELKELA--AATIANVVSNPG 438 (859)
Q Consensus 369 Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G------~i~~Lv~lL~~~~~~~~~~~~~a--~~~L~nL~~~~~ 438 (859)
++.+ + +...++.|..+|..++. .....+.| .|...+..+...--. ...+..| .-++..+.....
T Consensus 744 IL~~-Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~g-d~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 744 ILSL-KEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVG-DSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHhc-ccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHh
Confidence 4444 7 88899999999998873 11222222 445555555431001 1222222 233333333222
Q ss_pred cccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHH
Q 002999 439 CWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHR 518 (859)
Q Consensus 439 ~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 518 (859)
+.-. ...-++.+..+...|.+.++++...|+..+..++..-.. .-+.... ...++.+..+++.....+|
T Consensus 818 ~~ld--------~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe-~~l~~~~--~~LL~sll~ls~d~k~~~r 886 (1176)
T KOG1248|consen 818 NILD--------DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE-ECLSPHL--EELLPSLLALSHDHKIKVR 886 (1176)
T ss_pred cccc--------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH-HHHhhhH--HHHHHHHHHHHHhhhHHHH
Confidence 1110 111234445555567788999999999999888776221 1111111 1246777777777778888
Q ss_pred HHHHHHHHHHhhhccHHHHHhcCC
Q 002999 519 TYAFRLTRILSERIGQDLAYALKP 542 (859)
Q Consensus 519 ~~A~~~L~~Ls~~~~~~~~~~l~~ 542 (859)
...-.+|-.|.+..+.+..+.+.+
T Consensus 887 ~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 887 KKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHhCHHHHHhhCH
Confidence 888888887775444444444443
No 222
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.45 E-value=3.8 Score=48.24 Aligned_cols=322 Identities=13% Similarity=0.066 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHH------hcCCh
Q 002999 253 SEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLA------AAGRF 326 (859)
Q Consensus 253 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~------~~G~i 326 (859)
+....-.+...|+.|+.+......++ ..|+|..|..+=+.+ ........+|+.++........+. -..++
T Consensus 366 d~~l~~~~~k~~~~l~~h~kfa~~fv-~~~gi~kll~vpr~s---~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv 441 (1516)
T KOG1832|consen 366 DSPLLPDVMKLICALAAHRKFAAMFV-ERRGILKLLAVPRVS---ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVV 441 (1516)
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHH-HhhhhHHHhcCCCch---hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHH
Confidence 44455678888888888888777776 477877776664421 222334455666654433222221 12233
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHH-HHhhHHHHHHHhC---------------------ChhHHHHHHH
Q 002999 327 EPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHI-ARQCAKVLVELLS---------------------KPAGRAASLK 384 (859)
Q Consensus 327 ~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i-~~~gi~~Lv~lL~---------------------~~~~~~~a~~ 384 (859)
..-+.+|.-.....+.+++...+..-.....-.++ ...|...|+.+|+ +.+.....|.
T Consensus 442 ~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~ 521 (1516)
T KOG1832|consen 442 KLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCF 521 (1516)
T ss_pred HHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHH
Confidence 34444554444444444433222111111111111 2345566666655 1122333455
Q ss_pred HHHHhhC-----CCcc-hHHHHHcCcHHHHHHHHhccC---CCCHHHHHHHHHHHHHhhcCCCcccccccccccCccccc
Q 002999 385 ALYNLSG-----LDDN-ATILVDSALLPALTDILFKSH---DASPELKELAAATIANVVSNPGCWELASADKLGHSMQSE 455 (859)
Q Consensus 385 aL~~Ls~-----~~~~-~~~i~~~G~i~~Lv~lL~~~~---~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 455 (859)
+|+.--. .-++ ++.-...|.++..+.-+.... +-.....++..+-+..+....+........ ..+-+..-
T Consensus 522 alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~-~aenflkl 600 (1516)
T KOG1832|consen 522 ALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWP-AAENFLKL 600 (1516)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcch-HHHHHHHh
Confidence 5544322 1122 344444566666665444311 112233444444444444433311110000 01124445
Q ss_pred chHHHHHHhhcCC--------ChHHHHHHHHHHHHhccCChhHHHHHHHHh----hCCCHHHHHHhhcCC----ChhHHH
Q 002999 456 SIVSSLLGLLSGV--------SPQCQVSTLRILCGIASSPQAAESVATHIK----SGDGIKYIIQFLEHP----EVEHRT 519 (859)
Q Consensus 456 ~~i~~Ll~LL~~~--------~~~~~~~a~~aL~~La~~~~~~~~~~~~i~----~~g~i~~Lv~lL~~~----~~~v~~ 519 (859)
+++..++.+.... ..++...|+.+|+-+..-|.....+..... ...|+..++..-... +++++.
T Consensus 601 s~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~ 680 (1516)
T KOG1832|consen 601 SGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQ 680 (1516)
T ss_pred HHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHH
Confidence 6777777765432 237888899999998887754322221111 013666666543322 578999
Q ss_pred HHHHHHHHHhhhcc-----------------------------------HHHHHhcCCCCchHHHHHhhccCCC---chh
Q 002999 520 YAFRLTRILSERIG-----------------------------------QDLAYALKPFDKLVLFKDKILDNQS---ANC 561 (859)
Q Consensus 520 ~A~~~L~~Ls~~~~-----------------------------------~~~~~~l~~~g~i~~Lv~lL~~~~~---~~~ 561 (859)
.|+.++.|+. +.+ ....+.+...+||..|++||.-... .+.
T Consensus 681 ~AL~vIincV-c~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~ 759 (1516)
T KOG1832|consen 681 PALNVIINCV-CPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADC 759 (1516)
T ss_pred HHHhhhheee-cCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHH
Confidence 9999998886 211 1234456677899999999986554 346
Q ss_pred HHHHHHHHHHHhcCCcHHH
Q 002999 562 ERSDAACILANIQLSEEEV 580 (859)
Q Consensus 562 ~~~~A~~~L~~L~~~~~~~ 580 (859)
.+..|+.+|-.|+.++...
T Consensus 760 IRalAc~~L~GLaR~~tVr 778 (1516)
T KOG1832|consen 760 IRALACRVLLGLARDDTVR 778 (1516)
T ss_pred HHHHHHHHHhccccCcHHH
Confidence 7888999999999865543
No 223
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.28 E-value=10 Score=41.15 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=140.8
Q ss_pred HHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cch-----HHHHHhh--CchHHHHHHhcCCCHHHHHHHH
Q 002999 190 RVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EES-----KKIMLEE--GVTKSVIHSLIGNSEKEKEYAV 261 (859)
Q Consensus 190 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~-----r~~i~~~--g~i~~Lv~lL~~~~~~~~~~A~ 261 (859)
.+...|.++.|+..|..-+- +.|..+..+..++... .+. .+.+... ..+..|+.-- ++++..-.+-
T Consensus 71 Ei~~~dll~~Li~~L~~L~f----EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g 144 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDF----ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCG 144 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-H----HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCC----cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHH
Confidence 35556888999999988877 8999999998888765 222 2233332 1233333222 3456677888
Q ss_pred HHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhc-CCCcChHHHHhcC---ChHHHHHHhccCC
Q 002999 262 KLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKME-RIEEIVQPLAAAG---RFEPLINRLCQGS 337 (859)
Q Consensus 262 ~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~-~~~~~~~~i~~~G---~i~~Lv~lL~~~~ 337 (859)
..|++....+...+.+.. ...+..+.+... .++-++...|..++..|- .++.-.......+ .+...-.+|.+++
T Consensus 145 ~mlRec~k~e~l~~~iL~-~~~f~~ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N 222 (335)
T PF08569_consen 145 DMLRECIKHESLAKIILY-SECFWKFFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN 222 (335)
T ss_dssp HHHHHHTTSHHHHHHHHT-SGGGGGHHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS
T ss_pred HHHHHHHhhHHHHHHHhC-cHHHHHHHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 899999999888877764 667888888888 788899999999999865 4444334444432 4456778889999
Q ss_pred hHHHHHHHHHHHHhcCCCccHHHHHH-----hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc
Q 002999 338 DNVQIEMAFLVGKLTLTNSCKEHIAR-----QCAKVLVELLS--KPAGRAASLKALYNLSGLDD 394 (859)
Q Consensus 338 ~~~~~~aa~~L~~la~~~~~~~~i~~-----~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~ 394 (859)
--.+.++...|+.+-.+..|...+.. .....++.+|+ +..++-.|..++--...++.
T Consensus 223 YvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 223 YVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred eEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 99999999999999999999776643 23577888888 88899999888877766653
No 224
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.27 E-value=9.7 Score=42.15 Aligned_cols=100 Identities=12% Similarity=0.151 Sum_probs=77.1
Q ss_pred HHh-hCchHHHHHHhcCCC---HHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc---CCCChHHHHHHHHHHH
Q 002999 236 MLE-EGVTKSVIHSLIGNS---EKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG---NLELPALSNLADEVFK 308 (859)
Q Consensus 236 i~~-~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~a~~aL~ 308 (859)
+.+ ......|...+++.. +.+-..|+.++..+..++...-.+..+.|.++.+...+. -..+.++....-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 344 444556666666543 577888999999988887666666667999999988876 2345667777778899
Q ss_pred HhcCCCcChHHHHhcCChHHHHHHhcc
Q 002999 309 KMERIEEIVQPLAAAGRFEPLINRLCQ 335 (859)
Q Consensus 309 nL~~~~~~~~~i~~~G~i~~Lv~lL~~ 335 (859)
.||.+....+.+.+.+.++.+++++.+
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 999999999999999999999998854
No 225
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.094 Score=55.05 Aligned_cols=51 Identities=29% Similarity=0.506 Sum_probs=47.6
Q ss_pred ccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc
Q 002999 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP 133 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p 133 (859)
-.|.+++.-|.|||-+.+|..||-.+|.-|+.. +.+-|+|+++|...+|++
T Consensus 41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk------~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK------HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhceeccccccCcccccCCcEEeeehhhHHHHH------cCCCCCCCCcccccccee
Confidence 579999999999999999999999999999987 679999999999888876
No 226
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.98 E-value=4.8 Score=44.27 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=96.8
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHhcccC----cchHHHHHhhCchHHHHHHhcCCC-------HHHHHHHHHHHHHhc
Q 002999 200 IVKLLKSSSKSVGTILRSKALMALLSMAKD----EESKKIMLEEGVTKSVIHSLIGNS-------EKEKEYAVKLLLEFC 268 (859)
Q Consensus 200 Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~----~~~r~~i~~~g~i~~Lv~lL~~~~-------~~~~~~A~~~L~~Ls 268 (859)
+..+++..+. .-|..|+-....++++ ..+|+.+.++-+.+-+-++|.+.+ ...+..++.+|...+
T Consensus 16 ~~~L~~~k~D----~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC 91 (698)
T KOG2611|consen 16 CLKLLKGKRD----EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC 91 (698)
T ss_pred HHHHhcccCh----HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 4455555555 6777787777778776 347888999888999999997643 344667788899999
Q ss_pred cChhhh--hHhhhhhChHHHHHHhhcCCCChH------HHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh
Q 002999 269 IDEAYC--KSVASEKGALVLLSSMTGNLELPA------LSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL 333 (859)
Q Consensus 269 ~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~------~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL 333 (859)
..++.. +.+. ..||.|..++....|++ ..+.+-.+|...+..+.....++..|+++.+-++-
T Consensus 92 ~~pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 92 RVPELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMY 161 (698)
T ss_pred CChhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHH
Confidence 988643 2332 36899999998444444 67889999999999999999999999999998764
No 227
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.89 E-value=6.2 Score=38.62 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChH-HHHHHhh
Q 002999 214 ILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGAL-VLLSSMT 291 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i-~~Lv~lL 291 (859)
.+|..++.+++.|+.. +. +++ ..++.+...|+++++.+|..|+.+|..|...+-.+ -.|-+ ..++.++
T Consensus 3 ~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~~l 72 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHHHH
Confidence 7899999999988765 22 222 34889999999999999999999999998765433 13333 6777778
Q ss_pred cCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhc
Q 002999 292 GNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLC 334 (859)
Q Consensus 292 ~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~ 334 (859)
. .+|++++..|...+..+... ..+. + ...++.++..|.
T Consensus 73 ~-D~~~~Ir~~A~~~~~e~~~~~~~~~--i--~~~~~e~i~~l~ 111 (178)
T PF12717_consen 73 V-DENPEIRSLARSFFSELLKKRNPNI--I--YNNFPELISSLN 111 (178)
T ss_pred c-CCCHHHHHHHHHHHHHHHHhccchH--H--HHHHHHHHHHHh
Confidence 7 88999999999999999865 2221 1 224455555554
No 228
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.79 E-value=2.1 Score=50.05 Aligned_cols=198 Identities=13% Similarity=0.047 Sum_probs=131.5
Q ss_pred CcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHH-HhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHH
Q 002999 229 DEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLL-EFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVF 307 (859)
Q Consensus 229 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 307 (859)
...-+...++.|+...|+++..-+....+..+..+|. .++...+ .....++++-+.+.+...-.-.-.++.+|
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~------~~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE------RSYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC------chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 3455667778899999999998888888888777777 2222111 01235555655555222112234588999
Q ss_pred HHhcCCC-cChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCcc-HHHHHH--hhHHHHHHHhC--ChhHHHH
Q 002999 308 KKMERIE-EIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSC-KEHIAR--QCAKVLVELLS--KPAGRAA 381 (859)
Q Consensus 308 ~nL~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~-~~~i~~--~gi~~Lv~lL~--~~~~~~~ 381 (859)
.||++.+ ..+..+.+.-+++.+-.++.+.++..+..++..+.||..++.- ...+.+ .+.+.....+. ......+
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 9999754 4566788877777766777788899999999999999987755 444444 23444444444 6677777
Q ss_pred HHHHHHHhhCCCcch-HHHHH-cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 382 SLKALYNLSGLDDNA-TILVD-SALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 382 a~~aL~~Ls~~~~~~-~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
+++++..+....++. ..+.+ ......++.++.+ .+..++...+....|+..
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~---~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQD---EDDEIQHRGLVIILNLFE 699 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcC---chhhhhhhhhhhhhhHHH
Confidence 888888777666543 32333 4666777777754 456777777777777543
No 229
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.66 E-value=0.26 Score=44.04 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=57.5
Q ss_pred ChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 002999 282 GALVLLSSMTGNLELPALSNLADEVFKKMER-IEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLT 352 (859)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la 352 (859)
..+..|+++|..+.|+.+..-|+.=|..++. .|..+..+-+.|+-..++++|.+++++++.+|..++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3789999999656688888888888888885 5677777778899999999999999999999999887654
No 230
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.62 E-value=0.89 Score=44.89 Aligned_cols=133 Identities=16% Similarity=0.093 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccccc-c------ccCcccccchHHHHHHhhcCC------ChHHHHHHHHHHHHhcc
Q 002999 419 SPELKELAAATIANVVSNPGCWELASAD-K------LGHSMQSESIVSSLLGLLSGV------SPQCQVSTLRILCGIAS 485 (859)
Q Consensus 419 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~-~------~~~~l~~~~~i~~Ll~LL~~~------~~~~~~~a~~aL~~La~ 485 (859)
.......++.+|+||+....+......- . ....-.+...+..|+.++..+ ...-..+.+.+|.|+++
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3456778889999998877665422100 0 011123445788888887551 23566789999999999
Q ss_pred CChhHHHHHHHHhhC--CC--HHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCC---CchHHHHHhhccCC
Q 002999 486 SPQAAESVATHIKSG--DG--IKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPF---DKLVLFKDKILDNQ 557 (859)
Q Consensus 486 ~~~~~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~---g~i~~Lv~lL~~~~ 557 (859)
.+.. |+.+.+. +. +..|+.++++.+..-|..++.+++|++ .+.+.+..+... +.++.|+--|..++
T Consensus 88 ~~~g----R~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc--Fd~~~H~~LL~~~~~~iLp~LLlPLaGpE 160 (192)
T PF04063_consen 88 LPEG----RQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC--FDTDSHEWLLSDDEVDILPYLLLPLAGPE 160 (192)
T ss_pred CHHH----HHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh--ccHhHHHHhcCchhhhhHHHHHhhccCCC
Confidence 9765 4444432 33 788999999996666778899999996 444555665553 45666666665443
No 231
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.12 E-value=1.1 Score=44.00 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhh
Q 002999 420 PELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKS 499 (859)
Q Consensus 420 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~ 499 (859)
+.++.+++.+++-|+..-++. + +..++.+...|+++++.++..|+.+|..|..... +.-
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~------------v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~--------ik~ 60 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL------------V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM--------IKV 60 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH------------H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc--------eee
Confidence 468888999999888765432 1 5568899999999999999999999999977642 112
Q ss_pred CCC-HHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 002999 500 GDG-IKYIIQFLEHPEVEHRTYAFRLTRILSE 530 (859)
Q Consensus 500 ~g~-i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~ 530 (859)
.|- +..++.++.+++++++..|..++..+..
T Consensus 61 k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 61 KGQLFSRILKLLVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 233 3788888999999999999999999873
No 232
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.75 E-value=0.13 Score=52.44 Aligned_cols=42 Identities=29% Similarity=0.675 Sum_probs=35.3
Q ss_pred ccCcccccccCC---CeecCCCchhcHHHHHHHHHhcccCC-CCCCCCCC
Q 002999 77 FLCPLTKQVMKE---PVVLESAQAYERKAIEYWFERCLEDG-RDPTCPVT 122 (859)
Q Consensus 77 ~~cpi~~~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~-~~~~cP~t 122 (859)
|+||+..+.-.| ||.++|||..-+.+..+.-+. | .++.||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~n----G~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQN----GVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhc----CcEEeeCCCC
Confidence 899999999887 999999999999999876654 4 24568877
No 233
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.58 E-value=1.1 Score=42.93 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=96.4
Q ss_pred chHHHHHHhcC--CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCc-Ch
Q 002999 241 VTKSVIHSLIG--NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEE-IV 317 (859)
Q Consensus 241 ~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~-~~ 317 (859)
.+..++..|.. ...++|..+.-++..+- +..++... .-+-..+-.++. ..+.+....+..++..|-..+. -.
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~--~~~~~~i~~~~~-~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK--EKISDFIESLLD-EGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHC-CHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH--HHHHHHHHHHHc-cccchhHHHHHHHHHHHhCCCHHHH
Confidence 34556665553 45677888887777773 22222221 112333344444 4444566778888888876543 33
Q ss_pred HH-HHhcCChHHHHHHhc--cCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---Chh-HHHHHHHHHHH
Q 002999 318 QP-LAAAGRFEPLINRLC--QGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPA-GRAASLKALYN 388 (859)
Q Consensus 318 ~~-i~~~G~i~~Lv~lL~--~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~-~~~~a~~aL~~ 388 (859)
.. +...|.++.++.++. ..+..++..++.+|..-|.+...|..|...|++-|-++++ +.. ++..|+-+|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 33 446788999999998 7788888889999998888888899999999999999996 344 67777776654
No 234
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.31 E-value=5.3 Score=46.19 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhH
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKS 276 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 276 (859)
+..+++-..+.+. .+|...+..|..+..+..-...-+-.+....+..-|....+.+|.+|+-+|..+=.++..
T Consensus 87 f~hlLRg~Eskdk----~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d--- 159 (892)
T KOG2025|consen 87 FYHLLRGTESKDK----KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD--- 159 (892)
T ss_pred HHHHHhcccCcch----hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC---
Confidence 3344444444555 999999999999987533344445566777787777777889999999999998654321
Q ss_pred hhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHh
Q 002999 277 VASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAA 322 (859)
Q Consensus 277 i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~ 322 (859)
.+..++..++.++++.++++++..| |.|++.++.....+++
T Consensus 160 --ee~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 160 --EECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred --CcccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 1244677889999988888888764 5777766665555443
No 235
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.25 E-value=29 Score=37.16 Aligned_cols=167 Identities=15% Similarity=0.101 Sum_probs=110.3
Q ss_pred CchHHHH-HHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC--CcC
Q 002999 240 GVTKSVI-HSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI--EEI 316 (859)
Q Consensus 240 g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~~~ 316 (859)
+.+..|+ ..+++.+..+|+.|+..|.-.+.-+. .++ ...++.+...++ .+++.++..|+.++..+... ...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a--~~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA--KEHLPLFLQALQ-KDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH--HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3344444 56788899999999999998876544 222 225777888887 67899999999999998632 121
Q ss_pred hHH-------HHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHH-HHhC-----ChhHHHHHH
Q 002999 317 VQP-------LAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLV-ELLS-----KPAGRAASL 383 (859)
Q Consensus 317 ~~~-------i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv-~lL~-----~~~~~~~a~ 383 (859)
... ......+..+.+.|.+.+++++..++..+++|-..+.... ....+..|+ .... +..++..-.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~--~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD--PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 111 2234567778888888899999999999999876553222 111122222 2222 445666666
Q ss_pred HHHHHhhCCCcchHHHHHcCcHHHHHHHHhc
Q 002999 384 KALYNLSGLDDNATILVDSALLPALTDILFK 414 (859)
Q Consensus 384 ~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~ 414 (859)
..+-..+..+...+..+..+.+|.+-.+...
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 6677777777545566667777888777765
No 236
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.89 E-value=17 Score=40.06 Aligned_cols=237 Identities=16% Similarity=0.088 Sum_probs=125.5
Q ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCCh-HHHHHHHHHHHHhcCCCcChHH
Q 002999 242 TKSVIHSLIG-NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELP-ALSNLADEVFKKMERIEEIVQP 319 (859)
Q Consensus 242 i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~a~~aL~nL~~~~~~~~~ 319 (859)
+..++.-|.+ ....+|..++.-|..-+.+++.+..+- .+|.+..+++.+....+. ...-.++.++.-|+.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~r-a~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFR-AHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHH-HcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 5555555553 345678888888888888999999886 589999999999633333 3344445555556655555555
Q ss_pred HHhcCChHHHHHHhccC-ChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC-----------ChhHHHHHHHHHH
Q 002999 320 LAAAGRFEPLINRLCQG-SDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS-----------KPAGRAASLKALY 387 (859)
Q Consensus 320 i~~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~-----------~~~~~~~a~~aL~ 387 (859)
+-+.+....++.++... ..+.....- .....+-..+.+.-......++. ...-+..|..+|.
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le 175 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALE 175 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHH
Confidence 55666666667777610 000000000 00000000011111111111220 2234555666666
Q ss_pred Hhh---------CC--C----cchHHHHHcCcHHHHHHHHhc----c---------CCCCHHHHHHHHHHHHHhhcCCCc
Q 002999 388 NLS---------GL--D----DNATILVDSALLPALTDILFK----S---------HDASPELKELAAATIANVVSNPGC 439 (859)
Q Consensus 388 ~Ls---------~~--~----~~~~~i~~~G~i~~Lv~lL~~----~---------~~~~~~~~~~a~~~L~nL~~~~~~ 439 (859)
.++ .. . --++.+.+.|++..++..+.. . ........+.++.+|.|.+.....
T Consensus 176 ~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~ 255 (361)
T PF07814_consen 176 SLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEE 255 (361)
T ss_pred HHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 663 11 1 114567778999999999862 0 011234567789999988876654
Q ss_pred ccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 002999 440 WELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSP 487 (859)
Q Consensus 440 ~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~ 487 (859)
.+..........+ ......++..+....+.+...+++.+.|++.++
T Consensus 256 nq~~l~~~~~~~l--~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n 301 (361)
T PF07814_consen 256 NQSYLLSHRSSLL--PQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN 301 (361)
T ss_pred chHHHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence 4432111100000 011122222222233355677899999998875
No 237
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=89.72 E-value=0.4 Score=38.52 Aligned_cols=43 Identities=28% Similarity=0.578 Sum_probs=34.5
Q ss_pred cCcccccccCC----Ceec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 78 LCPLTKQVMKE----PVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 78 ~cpi~~~~m~d----Pv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
+||-|+--|.. ||+- .|.|.|--.||.+|+.. +..||+.+++.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T------k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT------KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh------CCCCCCCCcee
Confidence 37777776632 5654 79999999999999998 67999998875
No 238
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.77 E-value=7.3 Score=46.48 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=99.1
Q ss_pred cCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHH--hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHH
Q 002999 323 AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIAR--QCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATI 398 (859)
Q Consensus 323 ~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~--~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~ 398 (859)
...+|.|++...+.+...+.+-..+|.++-.+-.....+-+ .-.|.|++-|+ |..++-.+..+|.-+......-..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 35889999988877777788888888887664444333333 22488899999 888888888888777654432211
Q ss_pred HHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHH
Q 002999 399 LVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLR 478 (859)
Q Consensus 399 i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~ 478 (859)
---.-.+|.++.+=.+++...+.+++.|+..|..|...-+...- .-.+..++..|...|.+.---++..|.+
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l--------~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSL--------LSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccc--------ccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 11123566666655442222478999999999999884443331 2345678888888887766567766665
Q ss_pred H
Q 002999 479 I 479 (859)
Q Consensus 479 a 479 (859)
+
T Consensus 1018 t 1018 (1030)
T KOG1967|consen 1018 T 1018 (1030)
T ss_pred H
Confidence 3
No 239
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.56 E-value=12 Score=44.45 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=83.6
Q ss_pred HHhhHHHHHHHhC----------ChhHHHHHHHHHHHhhCCCcchHHHHHc--------CcHHHHHHHHhccC-CCCHHH
Q 002999 362 ARQCAKVLVELLS----------KPAGRAASLKALYNLSGLDDNATILVDS--------ALLPALTDILFKSH-DASPEL 422 (859)
Q Consensus 362 ~~~gi~~Lv~lL~----------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~--------G~i~~Lv~lL~~~~-~~~~~~ 422 (859)
.-+|+..++++.. -.+....|+.+|.-+..-+..+..+..+ .++..++..-...+ ..++++
T Consensus 599 kls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei 678 (1516)
T KOG1832|consen 599 KLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEI 678 (1516)
T ss_pred HhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHH
Confidence 4456666666655 1356677888888888888888777643 24444444332222 236899
Q ss_pred HHHHHHHHHHhhcCCC-ccccccc---c----------ccc-------------CcccccchHHHHHHhhcCCCh-----
Q 002999 423 KELAAATIANVVSNPG-CWELASA---D----------KLG-------------HSMQSESIVSSLLGLLSGVSP----- 470 (859)
Q Consensus 423 ~~~a~~~L~nL~~~~~-~~~~~~~---~----------~~~-------------~~l~~~~~i~~Ll~LL~~~~~----- 470 (859)
+..|+.+|-|++..++ .|..+.. . .+. ..+...++|..|+.||+-..|
T Consensus 679 ~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD 758 (1516)
T KOG1832|consen 679 IQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTAD 758 (1516)
T ss_pred HHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHH
Confidence 9999999999977663 3332211 0 000 234556789999999976544
Q ss_pred HHHHHHHHHHHHhccCCh
Q 002999 471 QCQVSTLRILCGIASSPQ 488 (859)
Q Consensus 471 ~~~~~a~~aL~~La~~~~ 488 (859)
.++.-|+.+|..|++++.
T Consensus 759 ~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 759 CIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHHHHhccccCcH
Confidence 678889999999999974
No 240
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=88.51 E-value=0.71 Score=34.33 Aligned_cols=41 Identities=17% Similarity=0.486 Sum_probs=30.9
Q ss_pred Cccccc--ccCCCeecCCC-----chhcHHHHHHHHHhcccCCCCCCCCCCC
Q 002999 79 CPLTKQ--VMKEPVVLESA-----QAYERKAIEYWFERCLEDGRDPTCPVTG 123 (859)
Q Consensus 79 cpi~~~--~m~dPv~~~~g-----~t~~r~~I~~~~~~~~~~~~~~~cP~t~ 123 (859)
|-|+++ --.+|.+.||. +.+=++++.+|+.. +.+.+||+++
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~----~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE----SGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH----cCCCcCCCCC
Confidence 667765 34568888875 66899999999987 3356899874
No 241
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.22 E-value=44 Score=37.07 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=86.1
Q ss_pred HHHHHHHHhcc-CChhHHHHHHHHhh-CCCHHHHHHhhcCCC---hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHH
Q 002999 475 STLRILCGIAS-SPQAAESVATHIKS-GDGIKYIIQFLEHPE---VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLF 549 (859)
Q Consensus 475 ~a~~aL~~La~-~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~---~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~L 549 (859)
..++.+..+.. ++.....++. +.+ ...+..|..++++.. +.+-..|+..+..+. +..+..-..+.+.|.++.+
T Consensus 79 ~lLk~l~~~~~~~~~~~~~lrn-l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I-~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 79 SLLKFLSHAMQHSGGFGDRLRN-LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFI-HNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHhccCCCccccccc-ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHH-hcCCchhHHHHHcCChHHH
Confidence 34444555555 3333233443 334 444556666776664 467778888888887 5666777888899999999
Q ss_pred HHhhc-cCCC-chhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhh
Q 002999 550 KDKIL-DNQS-ANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTH 599 (859)
Q Consensus 550 v~lL~-~~~~-~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~ 599 (859)
+..+. .+-. ..++....-.+|+.|+.++..++.+.+.+.++.+++++.+.
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 99888 3321 23666777789999999999999999999999999988763
No 242
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.94 E-value=67 Score=38.72 Aligned_cols=217 Identities=13% Similarity=0.097 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhc-CCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhh
Q 002999 214 ILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLI-GNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMT 291 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL 291 (859)
.....+..++...+.. ..+...+. -.+...+..+. +..+..+..|+++++..+... ..... .++.+..|.++.
T Consensus 465 ~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl~~~--~p~ild~L~qla 539 (1005)
T KOG2274|consen 465 FLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVK-VLLSL--QPMILDGLLQLA 539 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCce-ecccc--chHHHHHHHHHc
Confidence 4445666666655543 22222211 11233333333 334556777788777776332 22222 367888888888
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh--ccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHH
Q 002999 292 GNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL--CQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVL 369 (859)
Q Consensus 292 ~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL--~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~L 369 (859)
. ....++....+++|+..++.+.......+.-..|.++.+. .+.++-+...+-.++..++....+..-+.+.-+|.+
T Consensus 540 s-~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPsl 618 (1005)
T KOG2274|consen 540 S-KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSL 618 (1005)
T ss_pred c-cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 7 5566777888999999998877777777778888888876 345555555555566666665555555666678999
Q ss_pred HHHhC--C----hhHHHHHHHHHHHhhCCCcch-HHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCC
Q 002999 370 VELLS--K----PAGRAASLKALYNLSGLDDNA-TILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPG 438 (859)
Q Consensus 370 v~lL~--~----~~~~~~a~~aL~~Ls~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~ 438 (859)
+..|. + ......++..|..+-++.++. ....-.-+.|++.+..-+ + .+..+.+.+-++|+.+.....
T Consensus 619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlH-s-dD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLH-S-DDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheee-c-CChHHHHhHHHHHHHHHhcCH
Confidence 99998 2 455666777777776665332 222234567888887743 3 456788899999988877643
No 243
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=87.94 E-value=3.9 Score=42.14 Aligned_cols=96 Identities=9% Similarity=0.109 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhc-CCCcChHHHHhcCChHHHHHHhc
Q 002999 256 EKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKME-RIEEIVQPLAAAGRFEPLINRLC 334 (859)
Q Consensus 256 ~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~-~~~~~~~~i~~~G~i~~Lv~lL~ 334 (859)
....|+.+|.-++.-....+.++.....+..|+++|+....+.++..++.+|..+. .++.|.+.+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 35567788887776544444555568899999999975677888888888887776 67899999999999999999996
Q ss_pred cC--ChHHHHHHHHHHHHh
Q 002999 335 QG--SDNVQIEMAFLVGKL 351 (859)
Q Consensus 335 ~~--~~~~~~~aa~~L~~l 351 (859)
+. +.+++..+...|.-.
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 54 466666666655433
No 244
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=18 Score=44.68 Aligned_cols=210 Identities=11% Similarity=0.111 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHh--hCchHHHHHHhcCCCHHHHHHHHHHHHHhccC--hhhhhHhhhhhChHHHHHH
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLE--EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID--EAYCKSVASEKGALVLLSS 289 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~ 289 (859)
.+|..+.+.|..++..+.......+ ......|..-+++.....+..++.+|..|-.. .+.+..+. ..|+.++=
T Consensus 669 ~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~---k~I~EvIL 745 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP---KLIPEVIL 745 (1176)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHH
Confidence 8999999999999877333222211 11223334444444445555555555555432 34555553 25666655
Q ss_pred hhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcC------ChHHHHHHhccC--ChHHHHHHHHHHHHhcC-CCccHHH
Q 002999 290 MTGNLELPALSNLADEVFKKMERIEEIVQPLAAAG------RFEPLINRLCQG--SDNVQIEMAFLVGKLTL-TNSCKEH 360 (859)
Q Consensus 290 lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G------~i~~Lv~lL~~~--~~~~~~~aa~~L~~la~-~~~~~~~ 360 (859)
.++ ..|...+..|..+|..++. .....+.| .|...+..+..+ .+..+..+.. |..+.. -.+.+..
T Consensus 746 ~~K-e~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 746 SLK-EVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNI 819 (1176)
T ss_pred hcc-cccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhcc
Confidence 556 7888899999999999883 11222222 566666666555 3333333333 222211 1111222
Q ss_pred HHHhhHHHHHHH----hC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002999 361 IARQCAKVLVEL----LS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANV 433 (859)
Q Consensus 361 i~~~gi~~Lv~l----L~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL 433 (859)
+...-.+.++++ |. +++++..|.+.+.-+...- +..-.-...-.+|.+..++.. ....++.+.-..|.-|
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d---~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD---HKIKVRKKVRLLLEKL 896 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHH
Confidence 222223444443 33 8899999999999987754 333222233456777776643 3456666666666655
Q ss_pred hc
Q 002999 434 VS 435 (859)
Q Consensus 434 ~~ 435 (859)
+.
T Consensus 897 ir 898 (1176)
T KOG1248|consen 897 IR 898 (1176)
T ss_pred HH
Confidence 44
No 245
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.35 E-value=5.5 Score=38.11 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcccC-cchHHH-HHhhCchHHHHHHhc--CCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHH
Q 002999 214 ILRSKALMALLSMAKD-EESKKI-MLEEGVTKSVIHSLI--GNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSS 289 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~-~~~r~~-i~~~g~i~~Lv~lL~--~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 289 (859)
+-...++.++..+--. ++.-.. +...|.++.++.++. +.+...+..++.+|..-+.+...|..|. ..+++.|-+
T Consensus 58 d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~--~~~~~~L~~ 135 (157)
T PF11701_consen 58 DSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS--KNYVSWLKE 135 (157)
T ss_dssp CHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH--HHCHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH--HHHHHHHHH
Confidence 5567777777776555 454444 446889999999998 7788888888999988888888888886 457899999
Q ss_pred hhcCCCChH-HHHHHHHHHHHh
Q 002999 290 MTGNLELPA-LSNLADEVFKKM 310 (859)
Q Consensus 290 lL~~~~~~~-~~~~a~~aL~nL 310 (859)
+++.++|.. ++..|+-.|..|
T Consensus 136 ~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 136 LYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHccccchHHHHHHHHHHHhcC
Confidence 996466666 788888777653
No 246
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=19 Score=42.12 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=91.0
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCC
Q 002999 639 EQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDS 718 (859)
Q Consensus 639 ~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (859)
+.+.=|.+-+++.+. +|.+|.....+++---. -+.
T Consensus 517 qe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~--------------------------GTg------------------ 551 (929)
T KOG2062|consen 517 QEDADPLIKELLRDK-DPILRYGGMYTLALAYV--------------------------GTG------------------ 551 (929)
T ss_pred hhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHh--------------------------ccC------------------
Confidence 345557777888886 99999887776652111 110
Q ss_pred cchhhhcCCchHHHhh-hccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHH
Q 002999 719 QLCLLKSNCIKPLVDL-LAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWML 797 (859)
Q Consensus 719 ~~~l~~~g~i~~Lv~l-L~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l 797 (859)
..++|..|+.. ..+.|.+|+.+|..||+-++.+ + + ..++..+++|.++-|+.+|--|+-+|
T Consensus 552 -----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~-d--p----------~~~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 552 -----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-D--P----------EQLPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred -----chhhHHHhhcccccccchHHHHHHHHHheeeEec-C--h----------hhchHHHHHHhhhcChhhhhhHHHHH
Confidence 13567777777 5678999999999999998876 3 3 24577788888888999999999999
Q ss_pred HHHHhccccccccccchhhHHHHHHH-hhcCChhhHHHHHHHHHHH
Q 002999 798 ERVLRVEGHSHRYSLNQSLVRALVEA-FKHGNANAKRHAQEALTNL 842 (859)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~Lv~l-l~~~~~~~~~~A~~~L~~L 842 (859)
.-.+....... . ..|++- ..+...-+|+-|.-+++-+
T Consensus 614 GIaCAGtG~~e-------A-i~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 614 GIACAGTGLKE-------A-INLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred hhhhcCCCcHH-------H-HHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 99886432221 1 233333 3344466888888877643
No 247
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=87.23 E-value=16 Score=40.22 Aligned_cols=169 Identities=14% Similarity=0.089 Sum_probs=86.3
Q ss_pred HHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcch-HHHHHcCcHHHHHHHHhccCCCCHHHH
Q 002999 348 VGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRAASLKALYNLSGLDDNA-TILVDSALLPALTDILFKSHDASPELK 423 (859)
Q Consensus 348 L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~~ 423 (859)
+-+|+..++.-+...+.-.+-+-+-+. ...-+.+|+..|..|+..-+.. ..++ .+.+..++.--...+..+..-+
T Consensus 194 ~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~K 272 (370)
T PF08506_consen 194 FPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSK 272 (370)
T ss_dssp HHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHH
T ss_pred cCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHH
Confidence 445666555555554444444433344 3456778899999998542211 1111 1222222222222234567889
Q ss_pred HHHHHHHHHhhcCCCccccccccccc----CcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhh
Q 002999 424 ELAAATIANVVSNPGCWELASADKLG----HSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKS 499 (859)
Q Consensus 424 ~~a~~~L~nL~~~~~~~~~~~~~~~~----~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~ 499 (859)
+.|+..+..|+........-..+.+. .......++|.|- --.+..|-++..|++.+..+...-.. +.+.
T Consensus 273 D~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~-~~l~----- 345 (370)
T PF08506_consen 273 DGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK-EQLL----- 345 (370)
T ss_dssp HHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-HHHH-----
T ss_pred HHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-HHHH-----
Confidence 99999999998876443210000000 0011112222222 01145677888899998888665221 1221
Q ss_pred CCCHHHHHHhhcCCChhHHHHHHHHH
Q 002999 500 GDGIKYIIQFLEHPEVEHRTYAFRLT 525 (859)
Q Consensus 500 ~g~i~~Lv~lL~~~~~~v~~~A~~~L 525 (859)
+.++.++..|++++.-|...|+.++
T Consensus 346 -~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 346 -QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3689999999999999998888764
No 248
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.16 E-value=49 Score=36.87 Aligned_cols=151 Identities=16% Similarity=0.133 Sum_probs=99.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHhcCCC----cChHHHHhcCChHHHHHHhccC------ChHHHHH-HHHHHHHhcCCC
Q 002999 287 LSSMTGNLELPALSNLADEVFKKMERIE----EIVQPLAAAGRFEPLINRLCQG------SDNVQIE-MAFLVGKLTLTN 355 (859)
Q Consensus 287 Lv~lL~~~~~~~~~~~a~~aL~nL~~~~----~~~~~i~~~G~i~~Lv~lL~~~------~~~~~~~-aa~~L~~la~~~ 355 (859)
+..++. ..+.+-+-.|+-....+++++ .|++.+.++=+.+.+=++|.++ ++.+-.. +...|.-.|..+
T Consensus 16 ~~~L~~-~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLK-GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhc-ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 444555 555566667777777777654 3677899998899888888643 2444333 344566666655
Q ss_pred cc--HHHHHHhhHHHHHHHhC---Chh------HHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHH
Q 002999 356 SC--KEHIARQCAKVLVELLS---KPA------GRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKE 424 (859)
Q Consensus 356 ~~--~~~i~~~gi~~Lv~lL~---~~~------~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~ 424 (859)
+- ...|. +.+|.|..++. +++ +...+-.+|..++..+.....++..|+++.+-+.-..+ +. ..-..
T Consensus 95 ElAsh~~~v-~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~-~~-~~d~a 171 (698)
T KOG2611|consen 95 ELASHEEMV-SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP-DG-SHDMA 171 (698)
T ss_pred hhccCHHHH-HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC-CC-chhHH
Confidence 33 22221 34788888887 444 77889999999999999999999999999998665432 22 12234
Q ss_pred HHHHHHHHhhcCCCccc
Q 002999 425 LAAATIANVVSNPGCWE 441 (859)
Q Consensus 425 ~a~~~L~nL~~~~~~~~ 441 (859)
-++.++.-++..-..|.
T Consensus 172 lal~Vlll~~~~~~cw~ 188 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWS 188 (698)
T ss_pred HHHHHHHHHHHhcccCc
Confidence 45555555556555555
No 249
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.11 E-value=1e+02 Score=39.56 Aligned_cols=320 Identities=10% Similarity=0.041 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHh-cccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc
Q 002999 214 ILRSKALMALLS-MAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG 292 (859)
Q Consensus 214 ~~~~~al~~L~~-L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 292 (859)
.+|. |...+++ |..|..+-..-.-...+..|+.-|.+....+|+.++-+|..|....+.-+..-.-...-..+.+...
T Consensus 1013 ~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD 1091 (1702)
T KOG0915|consen 1013 KVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD 1091 (1702)
T ss_pred HHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 5544 4444554 4444222222222445677777777888899999999999999886544333211223334444443
Q ss_pred CCCChHHHH---HHHHHHHHhcCC--C-cC--hHHHHhcCChHHHHH--HhccCChHHHHHHHHHHHHhcCCCccHHHH-
Q 002999 293 NLELPALSN---LADEVFKKMERI--E-EI--VQPLAAAGRFEPLIN--RLCQGSDNVQIEMAFLVGKLTLTNSCKEHI- 361 (859)
Q Consensus 293 ~~~~~~~~~---~a~~aL~nL~~~--~-~~--~~~i~~~G~i~~Lv~--lL~~~~~~~~~~aa~~L~~la~~~~~~~~i- 361 (859)
+-.+.+++ .++.+|..||.. + .| ...=+-..++|.|+. .+ +.-.+++.-+..++..|+-+......-
T Consensus 1092 -DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~ 1169 (1702)
T KOG0915|consen 1092 -DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPH 1169 (1702)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcch
Confidence 22234444 456667777621 1 11 111111234454443 23 556788888888888877544331100
Q ss_pred HHhhHHHHHHHhC--Chh-----------HHHHHHHHHHH-hhCCCcchHHH------HH----cCcHHHHHHHHhccCC
Q 002999 362 ARQCAKVLVELLS--KPA-----------GRAASLKALYN-LSGLDDNATIL------VD----SALLPALTDILFKSHD 417 (859)
Q Consensus 362 ~~~gi~~Lv~lL~--~~~-----------~~~~a~~aL~~-Ls~~~~~~~~i------~~----~G~i~~Lv~lL~~~~~ 417 (859)
...-+|.|+...+ .+. ....|+..++. .+.+.+.-+.| ++ ...+|.+.+++++.
T Consensus 1170 ~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s-- 1247 (1702)
T KOG0915|consen 1170 FPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS-- 1247 (1702)
T ss_pred hhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--
Confidence 1112355555554 222 22223333322 12222211111 11 25678888888763
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 002999 418 ASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHI 497 (859)
Q Consensus 418 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i 497 (859)
.....+.-++..+.-|+..-..-. .=.....+..++..+++-++.++...+.+...|+.-... ...++
T Consensus 1248 Vgl~Tkvg~A~fI~~L~~r~~~em---------tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~-dq~qK-- 1315 (1702)
T KOG0915|consen 1248 VGLGTKVGCASFISLLVQRLGSEM---------TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP-DQMQK-- 1315 (1702)
T ss_pred CCCCcchhHHHHHHHHHHHhcccc---------CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh-HHHHH--
Confidence 334567777777777765422111 112234566666667777888888888777777654322 11122
Q ss_pred hhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCC
Q 002999 498 KSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQ 557 (859)
Q Consensus 498 ~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 557 (859)
-+..++..+-.+.+..+..++..+.+++.+..+.. +... ..|-||+-+-.+..
T Consensus 1316 ----Lie~~l~~~l~k~es~~siscatis~Ian~s~e~L-kn~a--saILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1316 ----LIETLLADLLGKDESLKSISCATISNIANYSQEML-KNYA--SAILPLIFLAMHEE 1368 (1702)
T ss_pred ----HHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHH-HhhH--HHHHHHHHHHHhHH
Confidence 23444443333333333667777777764332222 2211 35566666655544
No 250
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=86.81 E-value=0.57 Score=46.00 Aligned_cols=68 Identities=18% Similarity=0.099 Sum_probs=47.5
Q ss_pred cccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCC--CCcccCCCCCcchhhh--HhHHHHHHHh
Q 002999 76 NFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPV--TGQVLKSLELKPNIGL--AGAIEEWVNR 147 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~--t~~~l~~~~l~pn~~l--~~~I~~w~~~ 147 (859)
+.+||||..-..-|++- .|.|.|||..|...++- .-...||. |-+.+...+++-++.| |.+|...+..
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~----~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir~s 261 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQV----ECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIRNS 261 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcC----CceeecchhhcchheeccchhhhHHHHHHHHHHHHHhh
Confidence 36899999999999854 89999999999999973 11456897 4455555555555443 4445444433
No 251
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.81 E-value=1.4 Score=44.28 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCc---hH----HHHHHhc-CCCHHHHHHHHHHHHHhccCh-hhhhHhhhhhChH
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGV---TK----SVIHSLI-GNSEKEKEYAVKLLLEFCIDE-AYCKSVASEKGAL 284 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~---i~----~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i 284 (859)
.-|..|+++|++|+..+.|...|...+- ++ .|+++|. .+++..|+-|+.+|.+|+..+ ..++.++...++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4589999999999999999888877663 33 3344443 456788999999999999876 4577888889999
Q ss_pred HHHHHhhc
Q 002999 285 VLLSSMTG 292 (859)
Q Consensus 285 ~~Lv~lL~ 292 (859)
..|+.++.
T Consensus 219 ~~Li~FiE 226 (257)
T PF12031_consen 219 SHLIAFIE 226 (257)
T ss_pred HHHHHHHH
Confidence 99999998
No 252
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.50 E-value=3.5 Score=47.38 Aligned_cols=128 Identities=21% Similarity=0.309 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHh
Q 002999 654 SKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVD 733 (859)
Q Consensus 654 ~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ 733 (859)
|++.+|+.||.-+..+..+-+.+ ...+|..+++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l-----------------------------------------------~~~Ai~a~~D 66 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDL-----------------------------------------------QEEAINAQLD 66 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGG-----------------------------------------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhh-----------------------------------------------HHHHHHHHHH
Confidence 58999999999888776543322 3457999999
Q ss_pred hhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccc
Q 002999 734 LLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLN 813 (859)
Q Consensus 734 lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 813 (859)
|.+++|..|+..|+..|-.+..++.+. +. ..++.|.++|.+ .++.-....-.+|-.+++.. .-
T Consensus 67 LcEDed~~iR~~aik~lp~~ck~~~~~----v~-----kvaDvL~QlL~t-dd~~E~~~v~~sL~~ll~~d-------~k 129 (556)
T PF05918_consen 67 LCEDEDVQIRKQAIKGLPQLCKDNPEH----VS-----KVADVLVQLLQT-DDPVELDAVKNSLMSLLKQD-------PK 129 (556)
T ss_dssp HHT-SSHHHHHHHHHHGGGG--T--T-----HH-----HHHHHHHHHTT----HHHHHHHHHHHHHHHHH--------HH
T ss_pred HHhcccHHHHHHHHHhHHHHHHhHHHH----Hh-----HHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhcC-------cH
Confidence 999999999999999999999872111 12 245678899984 77777777788888888643 11
Q ss_pred hhhHHHHHHHhh---cCChhhHHHHHHHHH-HHhhhc
Q 002999 814 QSLVRALVEAFK---HGNANAKRHAQEALT-NLKQIS 846 (859)
Q Consensus 814 ~~~~~~Lv~ll~---~~~~~~~~~A~~~L~-~L~~~~ 846 (859)
+.+ ..|.+-+. ++|..+|+.+.+.|+ +|..++
T Consensus 130 ~tL-~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 130 GTL-TGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp HHH-HHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred HHH-HHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 112 34444443 789999999998774 555443
No 253
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.38 E-value=7.1 Score=47.85 Aligned_cols=135 Identities=23% Similarity=0.241 Sum_probs=105.1
Q ss_pred HHHHHHhC------ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCc
Q 002999 367 KVLVELLS------KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGC 439 (859)
Q Consensus 367 ~~Lv~lL~------~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~ 439 (859)
|.++...+ +|.++.+|.-||..+..-. +-+ .--+|.|+..|.. .+.+.++-++.-+++-++-.-++
T Consensus 922 piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimek--sp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 922 PIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEK--SPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhc--CCCceeeecchheccchhhhccc
Confidence 56666665 7889999999999987644 222 2346899999965 46678898998888888776654
Q ss_pred ccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHH
Q 002999 440 WELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRT 519 (859)
Q Consensus 440 ~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 519 (859)
.. +..-+.|.+-|.+.++.++..|+.+|.+|-.+. .|.--|-+..+...+.+++++++.
T Consensus 995 li-------------e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--------miKVKGql~eMA~cl~D~~~~Isd 1053 (1251)
T KOG0414|consen 995 LI-------------EPWTEHLYRRLRDESPSVRKTALLVLSHLILND--------MIKVKGQLSEMALCLEDPNAEISD 1053 (1251)
T ss_pred cc-------------chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--------hhHhcccHHHHHHHhcCCcHHHHH
Confidence 32 345677888889999999999999999997663 344458899999999999999999
Q ss_pred HHHHHHHHHh
Q 002999 520 YAFRLTRILS 529 (859)
Q Consensus 520 ~A~~~L~~Ls 529 (859)
-|-..+.-|+
T Consensus 1054 lAk~FF~Els 1063 (1251)
T KOG0414|consen 1054 LAKSFFKELS 1063 (1251)
T ss_pred HHHHHHHHhh
Confidence 8887777776
No 254
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=86.22 E-value=12 Score=42.10 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCH----HHHHHHHHHHHHhccChh
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSE----KEKEYAVKLLLEFCIDEA 272 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~----~~~~~A~~~L~~Ls~~~~ 272 (859)
...+.+.+.+++. ..+..|+..|..++.+...-+.+....++..|..+..+++. +.....+.++..+-...-
T Consensus 85 a~~i~e~l~~~~~----~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv 160 (713)
T KOG2999|consen 85 AKRIMEILTEGNN----ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV 160 (713)
T ss_pred HHHHHHHHhCCCc----HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce
Confidence 4567788888888 88888999999999997777777777779999999988764 444445555555433221
Q ss_pred hhhHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcCCCc-ChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHH
Q 002999 273 YCKSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKMERIEE-IVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGK 350 (859)
Q Consensus 273 ~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~ 350 (859)
....... ...|...+.+.+ ...+..+...|+..|-++..++. .+..+.+.--+..|+.+|+.++..++..|...|..
T Consensus 161 vsW~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 1111111 223444444444 24556677888888888886655 56678888899999999999998888886665555
Q ss_pred hc
Q 002999 351 LT 352 (859)
Q Consensus 351 la 352 (859)
+-
T Consensus 240 l~ 241 (713)
T KOG2999|consen 240 LF 241 (713)
T ss_pred HH
Confidence 53
No 255
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.21 E-value=40 Score=39.43 Aligned_cols=180 Identities=18% Similarity=0.131 Sum_probs=112.5
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHH
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEH 360 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~ 360 (859)
.|.+..|++-.. +.+..++..++..|..|......+..-+-.+....+...|.+..+.++.+|.-+|..+-.++.+-.
T Consensus 84 ~~~f~hlLRg~E-skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee- 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTE-SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE- 161 (892)
T ss_pred HHHHHHHHhccc-CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-
Confidence 566777777777 889999999999999998755555555566777888888888899999999999999986442211
Q ss_pred HHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHc-----CcHHHHH-------------------HHHh
Q 002999 361 IARQCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDS-----ALLPALT-------------------DILF 413 (859)
Q Consensus 361 i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-----G~i~~Lv-------------------~lL~ 413 (859)
...+..++.+++ +++++.+| |.|++.++.....|++. |++..++ .+|.
T Consensus 162 --~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~Lle 236 (892)
T KOG2025|consen 162 --CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLE 236 (892)
T ss_pred --ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 012345667777 66777765 46666555444444331 3333332 2222
Q ss_pred c-cCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCCh-HHHHHHHHHHHHh
Q 002999 414 K-SHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSP-QCQVSTLRILCGI 483 (859)
Q Consensus 414 ~-~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~-~~~~~a~~aL~~L 483 (859)
- -++.+..++..+...|.. +|-. ...|-+..+++-|..... ++...++.+|...
T Consensus 237 wgLnDRe~sVk~A~~d~il~------~Wl~----------~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 237 WGLNDREFSVKGALVDAILS------GWLR----------FSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HhhhhhhhHHHHHHHHHHHH------HHhh----------hccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1 123344555555555542 2322 124555556665655443 7777777777763
No 256
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.98 E-value=53 Score=35.14 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=106.7
Q ss_pred CChHHHH-HHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcc--hHH
Q 002999 324 GRFEPLI-NRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDN--ATI 398 (859)
Q Consensus 324 G~i~~Lv-~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~--~~~ 398 (859)
+.+..|| ..+++.+..++..+..+|+-.+.-+. .++...++.+...+. +..++..|+.+|..+...... -..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 3444444 56678889999999999998887664 233344566666666 788999999999998764321 111
Q ss_pred -------HHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccc-cchHHHHHHhhcC---
Q 002999 399 -------LVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQS-ESIVSSLLGLLSG--- 467 (859)
Q Consensus 399 -------i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~-~~~i~~Ll~LL~~--- 467 (859)
......+..+...|.+ .+.+++..|+..++.|-.++. +.. ..++..|+-+--+
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~a~EGl~KLlL~~~-------------i~~~~~vL~~Lll~yF~p~t 166 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDS---ENPELQAIAVEGLCKLLLSGR-------------ISDPPKVLSRLLLLYFNPST 166 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhcCC-------------CCcHHHHHHHHHHHHcCccc
Confidence 1123566677777755 356899999999999877652 344 5566666554432
Q ss_pred -CChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC
Q 002999 468 -VSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE 514 (859)
Q Consensus 468 -~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 514 (859)
.++.++......+-..|.....+ +.......++.+-.+.+...
T Consensus 167 ~~~~~LrQ~L~~Ffp~y~~s~~~~----Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 167 EDNQRLRQCLSVFFPVYASSSPEN----QERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHHHhCcc
Confidence 23456665556666667665422 22333456676666665543
No 257
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=85.37 E-value=95 Score=37.53 Aligned_cols=176 Identities=17% Similarity=0.070 Sum_probs=105.3
Q ss_pred HHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccc-hHHHHH
Q 002999 385 ALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSES-IVSSLL 462 (859)
Q Consensus 385 aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~-~i~~Ll 462 (859)
+||++.... ++++.+.+.|++..+...+... ....++..+.+++.|++...+.+... ..... -...+-
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f--~~~~~~~~il~~l~n~~~~~~~~~~~--------~~~~~~~~~~f~ 563 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF--DNEELHRKILGLLGNLAEVLELRELL--------MIFEFIDFSVFK 563 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHhhhhhhh--------hHHHHHHHHHHH
Confidence 899999877 7899999999999999999863 44688999999999999877655421 11111 112333
Q ss_pred HhhcCCCh-HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcC
Q 002999 463 GLLSGVSP-QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALK 541 (859)
Q Consensus 463 ~LL~~~~~-~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~ 541 (859)
.+++..+. +.-..++.+|+.+..+.+.. ....-+..+...+........... ....
T Consensus 564 ~~~~~w~~~ersY~~~siLa~ll~~~~~~----------------------~~~~~r~~~~~~l~e~i~~~~~~~-~~~~ 620 (699)
T KOG3665|consen 564 VLLNKWDSIERSYNAASILALLLSDSEKT----------------------TECVFRNSVNELLVEAISRWLTSE-IRVI 620 (699)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHhCCCcC----------------------ccccchHHHHHHHHHHhhccCccc-eeeh
Confidence 34455544 66667777777776653210 000111222222222211111111 0111
Q ss_pred CCCchHH-HHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHHhccHHHHHH
Q 002999 542 PFDKLVL-FKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLEATFIKWIVI 594 (859)
Q Consensus 542 ~~g~i~~-Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~g~v~~L~~ 594 (859)
-...+.+ +.+++..+.. +..+..|++++.++...++.. +.+.+.|+++.+..
T Consensus 621 ~~~~f~~~~~~il~~s~~-~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (699)
T KOG3665|consen 621 NDRSFFPRILRILRLSKS-DGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIEN 674 (699)
T ss_pred hhhhcchhHHHHhcccCC-CchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhh
Confidence 1123334 5566666655 477889999999999877777 55667777765433
No 258
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.36 E-value=0.35 Score=51.02 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=41.0
Q ss_pred ccCcccccccCC---CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC
Q 002999 77 FLCPLTKQVMKE---PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL 129 (859)
Q Consensus 77 ~~cpi~~~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~ 129 (859)
+.|.|++++|.| |++.|+|++|-..+|+.|-..+ .-+||.++..+..+
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~-----~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDD-----GIGDPRTKKVFRYS 381 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccC-----CCcCCCCCccccHH
Confidence 679999999997 9999999999999999998762 27999998766543
No 259
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.22 E-value=1e+02 Score=37.72 Aligned_cols=416 Identities=15% Similarity=0.123 Sum_probs=215.2
Q ss_pred CCcchhhhHhHHHHHHH--hcccccHHHHHhhhhcCCCccchHHHHHHHHHHHHhc----C----------CcchhHHHh
Q 002999 130 ELKPNIGLAGAIEEWVN--RNVEVQVSTVVETLRKENPEVDGLDKALDIVFKISEE----H----------PSNRYRVRN 193 (859)
Q Consensus 130 ~l~pn~~l~~~I~~w~~--~~~~~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~----~----------~~~r~~i~~ 193 (859)
++.||...|+.-+.-.. ++...-+..+++.+.+...+..+.+.|.-.+++.... + ++.|..+++
T Consensus 13 T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~ire 92 (1010)
T KOG1991|consen 13 TIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRE 92 (1010)
T ss_pred hcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHH
Confidence 34555556666555443 3333446667777776554433333355557765332 1 112333333
Q ss_pred cCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChh-
Q 002999 194 AGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEA- 272 (859)
Q Consensus 194 ~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~- 272 (859)
.++..+-.... -+|..--.+|..+..++--..+ .|.++..-.+|.+++......|+-+|..|++..+
T Consensus 93 -----nIl~~iv~~p~----~iRvql~~~l~~Ii~~D~p~~W---p~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 93 -----NILETIVQVPE----LIRVQLTACLNTIIKADYPEQW---PGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred -----HHHHHHHhCch----HHHHHHHHHHHHHHhcCCcccc---hhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 34444433333 5666666666566555221111 4677888889999988888888999999987643
Q ss_pred ----hhhHhhh-hhChHHHH----HHhhcCCCCh---HHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHH----HhccC
Q 002999 273 ----YCKSVAS-EKGALVLL----SSMTGNLELP---ALSNLADEVFKKMERIEEIVQPLAAAGRFEPLIN----RLCQG 336 (859)
Q Consensus 273 ----~~~~i~~-~~g~i~~L----v~lL~~~~~~---~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~----lL~~~ 336 (859)
.++-++. -....|.+ .+++. .++. +.....+.+...++..+= -..+...+.+.+-+. +++.+
T Consensus 161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~-~~s~~s~el~klIlKifks~~~~~L-P~~L~~~~~f~~W~~l~l~i~~rp 238 (1010)
T KOG1991|consen 161 KKDEERQPLGEAVEELFPDILQIFNGLLS-QESYQSVELQKLILKIFKSLIYYEL-PLELSAPETFTSWMELFLSILNRP 238 (1010)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHhC-CHHhhCchhHHHHHHHHHHHHcCC
Confidence 3333321 01133333 33444 3333 445555666566654321 122333343333333 33321
Q ss_pred C-----------------hHHHHHHHHHHHHhcC---C-----CccHHHH---H---HhhH-HHHHHHhC--------Ch
Q 002999 337 S-----------------DNVQIEMAFLVGKLTL---T-----NSCKEHI---A---RQCA-KVLVELLS--------KP 376 (859)
Q Consensus 337 ~-----------------~~~~~~aa~~L~~la~---~-----~~~~~~i---~---~~gi-~~Lv~lL~--------~~ 376 (859)
- -.++.-|+..|.++.. + ++++... . ..|+ ..+++.+. ++
T Consensus 239 vP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~ 318 (1010)
T KOG1991|consen 239 VPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSD 318 (1010)
T ss_pred CChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 1 1256666666766643 1 1233322 1 1233 55555554 56
Q ss_pred hHHHHHHHHHHHhhCCCcchHHH------HHcCcHHHHHHHHhc-----cCCCCHHHHHH------------HHHHHHHh
Q 002999 377 AGRAASLKALYNLSGLDDNATIL------VDSALLPALTDILFK-----SHDASPELKEL------------AAATIANV 433 (859)
Q Consensus 377 ~~~~~a~~aL~~Ls~~~~~~~~i------~~~G~i~~Lv~lL~~-----~~~~~~~~~~~------------a~~~L~nL 433 (859)
.+...+..-|.+..+....=+.+ +=.++|=+++.+=.+ ..++..-++.+ |+..+...
T Consensus 319 rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~ 398 (1010)
T KOG1991|consen 319 RVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTT 398 (1010)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHH
Confidence 66666666666665443221111 112222222211100 01111112211 33333333
Q ss_pred hcCCCcccccccccccCcccccchHHHHHHhhc--------CCChHHHHHHHHHHHHhccC---ChhHHHHHHHHhhCCC
Q 002999 434 VSNPGCWELASADKLGHSMQSESIVSSLLGLLS--------GVSPQCQVSTLRILCGIASS---PQAAESVATHIKSGDG 502 (859)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~--------~~~~~~~~~a~~aL~~La~~---~~~~~~~~~~i~~~g~ 502 (859)
+....++.. + .++++-++..|. ..++..++.|+.++.+|++- +...+...+.+ .
T Consensus 399 ~~~KR~ke~---------l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f----l 463 (1010)
T KOG1991|consen 399 LVSKRGKET---------L--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF----L 463 (1010)
T ss_pred HHHhcchhh---------h--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH----H
Confidence 333322221 1 456666667665 23457788899999888842 22222222333 4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhh--hccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH
Q 002999 503 IKYIIQFLEHPEVEHRTYAFRLTRILSE--RIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV 580 (859)
Q Consensus 503 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~--~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 580 (859)
++++...++++---.|..|||.+..++. -.+..+ + ..+++.-.+.|..++. -.++..|+-+|..+..+....
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~---l--~~ale~t~~~l~~d~~-lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNN---L--SEALELTHNCLLNDNE-LPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHH---H--HHHHHHHHHHhccCCc-CchhhHHHHHHHHHHhcchhh
Confidence 6777778888888999999999999971 122211 1 1355566677774444 278999999999998877665
No 260
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.19 E-value=1e+02 Score=37.71 Aligned_cols=138 Identities=15% Similarity=0.044 Sum_probs=85.4
Q ss_pred CcHHHHHHHHhcCCCC----cchHHHHHHHHHHHhcccC----cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHH
Q 002999 195 GVVLLIVKLLKSSSKS----VGTILRSKALMALLSMAKD----EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLE 266 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~----~~~~~~~~al~~L~~L~~~----~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~ 266 (859)
|.++.+++.|.+...+ .+......|+..++.|+.- ...+. ..+.=.+..+...++++..-.|..||+++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 5677888888732111 1226677888888888742 22222 2333346666677788888889999999999
Q ss_pred hccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCc-ChHHHHhc--CChHHHHHHhcc
Q 002999 267 FCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEE-IVQPLAAA--GRFEPLINRLCQ 335 (859)
Q Consensus 267 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~-~~~~i~~~--G~i~~Lv~lL~~ 335 (859)
++.-+-.-..+. ..+++...+.|.++.+-.++..|+-+|..+-.+.+ +..++... +.++.|+.+.++
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 985432111221 33667777777767777889999999999876544 33334331 333344444443
No 261
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.04 E-value=89 Score=36.92 Aligned_cols=124 Identities=14% Similarity=0.077 Sum_probs=80.1
Q ss_pred CChHHHHHH-hccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHH
Q 002999 324 GRFEPLINR-LCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATIL 399 (859)
Q Consensus 324 G~i~~Lv~l-L~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i 399 (859)
++|..|+.. .++.+++|+..|..+|+-++..+.. -.+..|.+|. |+-++..++.||.--|.+.-++.++
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi 626 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI 626 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChh-------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH
Confidence 456667666 4678899999999999877765533 2466788888 8999999999999888877766543
Q ss_pred HHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHH
Q 002999 400 VDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQC 472 (859)
Q Consensus 400 ~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~ 472 (859)
..|-.+. +++..-+|+-|+-+++-+......... --..++.+.|.+++.+.+.+.
T Consensus 627 ------~lLepl~---~D~~~fVRQgAlIa~amIm~Q~t~~~~---------pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 627 ------NLLEPLT---SDPVDFVRQGALIALAMIMIQQTEQLC---------PKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred ------HHHhhhh---cChHHHHHHHHHHHHHHHHHhcccccC---------chHHHHHHHHHHHhhhhhhHH
Confidence 2222233 234456677776666655332211110 112466777888887765543
No 262
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.94 E-value=95 Score=37.17 Aligned_cols=360 Identities=14% Similarity=0.113 Sum_probs=166.6
Q ss_pred hHHHHHHhhc----CCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccH
Q 002999 283 ALVLLSSMTG----NLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCK 358 (859)
Q Consensus 283 ~i~~Lv~lL~----~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~ 358 (859)
.+.....||. ...-...+..|...|.+.+..+.....+...+++..+.+...- .|+....+.-
T Consensus 289 fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~Vvl-------------pN~~lR~eDe 355 (960)
T KOG1992|consen 289 FVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVL-------------PNLILREEDE 355 (960)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcc-------------cccccchhhH
Confidence 4555555665 1112244567777888887766655555555665555554422 2222222222
Q ss_pred HHHHHhhHHHHHHHhC--ChhH-HHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 359 EHIARQCAKVLVELLS--KPAG-RAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 359 ~~i~~~gi~~Lv~lL~--~~~~-~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
+.....-..-.-+-|. |.+. ++.|+..+..|+..-+.+..=+=.+-+..++.--...++.++.-++.+......++.
T Consensus 356 ElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talai 435 (960)
T KOG1992|consen 356 ELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI 435 (960)
T ss_pred HHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence 2222222333334444 3333 566888889998876554221112223333332222234456666777777777766
Q ss_pred CCCcccccccccccCcccc--cchHHH-HHHhhc---CCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHh
Q 002999 436 NPGCWELASADKLGHSMQS--ESIVSS-LLGLLS---GVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQF 509 (859)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~--~~~i~~-Ll~LL~---~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~l 509 (859)
.......-....+ .++. .-.... +=.|++ ...|-++..++.-+.-.-..... ..+ + ..+|.++++
T Consensus 436 k~~t~~~Gvtstn--~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~-~~l---m---~~~p~li~~ 506 (960)
T KOG1992|consen 436 KGQTAKHGVTSTN--ELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGK-EHL---M---ALLPRLIRF 506 (960)
T ss_pred hcchhhcceeecc--ccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCCh-HHH---H---HHHHHHHHh
Confidence 5433221000000 0110 111112 223333 33455665555544433322221 111 1 258999999
Q ss_pred hcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchH-----HHHHhh---ccCCCc--hhHHHHHHHHHHHhcCCcHH
Q 002999 510 LEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLV-----LFKDKI---LDNQSA--NCERSDAACILANIQLSEEE 579 (859)
Q Consensus 510 L~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~-----~Lv~lL---~~~~~~--~~~~~~A~~~L~~L~~~~~~ 579 (859)
|+.+..-+-.+|+.++-.+-- ..+.....+...+-+. .|-.+. +.+... +-...+..++++-+.. .
T Consensus 507 L~a~s~vvhsYAA~aiEkil~-vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~---~ 582 (960)
T KOG1992|consen 507 LEAESRVVHSYAAIAIEKLLT-VRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQS---A 582 (960)
T ss_pred ccCcchHHHHHHHHHHHhccc-cccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHH---h
Confidence 999999999888888876641 1111111222222222 222222 233320 0111222222222211 1
Q ss_pred HHHHHHhccHHHHHHHHhhhc-ccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHH
Q 002999 580 VKTLLEATFIKWIVITLQTHK-SSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARV 658 (859)
Q Consensus 580 ~~~l~~~g~v~~L~~lL~~~~-~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~v 658 (859)
..... .-.+..|..++.... .. ++..-.-++=..++++.+.++..++...... +...+|.+...|+.+ -.+.
T Consensus 583 i~p~~-~~~l~~Lteiv~~v~KNP----s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eD-I~Ef 655 (960)
T KOG1992|consen 583 IIPHA-PELLRQLTEIVEEVSKNP----SNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSED-IQEF 655 (960)
T ss_pred hhhhh-hHHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHH-HHHH
Confidence 00000 001222333333221 11 1122233455578888888887776665554 556789998888774 4455
Q ss_pred HHHHHHHhhhhhhhccc
Q 002999 659 KQLAAHGLKNLSEAGRS 675 (859)
Q Consensus 659 k~~Aa~aL~~ls~~~~~ 675 (859)
--++-.-|+.+...+..
T Consensus 656 iPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 656 IPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 55555556666555443
No 263
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=84.82 E-value=21 Score=40.36 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=106.5
Q ss_pred ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCC-CCHHHHHHHHHHHHHhhcCCC-cccccccccccCcc
Q 002999 375 KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHD-ASPELKELAAATIANVVSNPG-CWELASADKLGHSM 452 (859)
Q Consensus 375 ~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~-~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~~~~~l 452 (859)
+...+..+..-|..++....-...++...++..|..++.+... ....+...++.++..+-.+.- .|. .
T Consensus 96 ~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~----------~ 165 (713)
T KOG2999|consen 96 NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE----------S 165 (713)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee----------e
Confidence 5566666888888888887777888888889999999876332 134566666666666655442 233 2
Q ss_pred cccchHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 002999 453 QSESIVSSLLGLLSGV--SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSE 530 (859)
Q Consensus 453 ~~~~~i~~Ll~LL~~~--~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~ 530 (859)
....+|.....+.+.. +..+-..|+..|-++..+... ....+.+.--+..|++.++..+..++..|..++-.+..
T Consensus 166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~---~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT---LRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH---HHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 3345566666655322 335666788888777766543 35678888999999999999999999888888877765
Q ss_pred hccHHHHHhcCC
Q 002999 531 RIGQDLAYALKP 542 (859)
Q Consensus 531 ~~~~~~~~~l~~ 542 (859)
..+++-+..+.+
T Consensus 243 ~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 243 KAPDDKRFEMAK 254 (713)
T ss_pred hCChHHHHHHHH
Confidence 455554444443
No 264
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.68 E-value=95 Score=36.95 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=33.0
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002999 785 RPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLK 843 (859)
Q Consensus 785 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~ 843 (859)
.+..++..|+.+|.+|.... .+.-..+...|.+-+.+.|..+|..|.-+|..|.
T Consensus 478 En~ivRaaAv~alaKfg~~~-----~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFGAQD-----VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhHHHHHHHHHHHhcCC-----CCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 56667777777777776211 1112223345666667777777777777777766
No 265
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.65 E-value=6.3 Score=39.02 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCC-----ChhHHHHHHHHHHHHhhhccHHHHHhcCCCCc
Q 002999 471 QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHP-----EVEHRTYAFRLTRILSERIGQDLAYALKPFDK 545 (859)
Q Consensus 471 ~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~ 545 (859)
.-..+++..|..++++|+. +..+.++..--.|..+|... .+..|..++..+..|....++++.+.+.....
T Consensus 115 nRvcnaL~lLQclaShPet----k~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTei 190 (315)
T COG5209 115 NRVCNALNLLQCLASHPET----KKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEI 190 (315)
T ss_pred hHHHHHHHHHHHHhcCcch----heeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhH
Confidence 3344677888888999865 34455554433455555332 23678899999999998888899999998899
Q ss_pred hHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHH
Q 002999 546 LVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLL 584 (859)
Q Consensus 546 i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~ 584 (859)
+|.++++...++. --+..|+.++..+-.++..++-+.
T Consensus 191 vPLcLrIme~gSE--lSktvaifI~qkil~dDvGLqYiC 227 (315)
T COG5209 191 VPLCLRIMELGSE--LSKTVAIFIFQKILGDDVGLQYIC 227 (315)
T ss_pred HHHHHHHHHhhhH--HHHHHHHHHHHHHhccchhHHHHH
Confidence 9999999998886 677889999999988887764333
No 266
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=84.62 E-value=0.55 Score=49.62 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=39.9
Q ss_pred cCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC
Q 002999 78 LCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL 129 (859)
Q Consensus 78 ~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~ 129 (859)
+|-||.+==+|=-+-||||-.|-.|+..|..+ .+ ..+|||||-.++-+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~s---d~-gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDS---DE-GQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhccc---CC-CCCCCceeeEeccc
Confidence 59999998888767799999999999999976 22 47999999777544
No 267
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=84.58 E-value=15 Score=36.11 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=62.8
Q ss_pred hHHHHHcCcHHHHHHHHhcc------CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCC
Q 002999 396 ATILVDSALLPALTDILFKS------HDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVS 469 (859)
Q Consensus 396 ~~~i~~~G~i~~Lv~lL~~~------~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~ 469 (859)
...+++.||+..|+.+|... ...+......++.+|..|..+..+... .+...+++..|+..|.+.+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~--------v~~~~~~v~~i~~~L~s~~ 171 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEA--------VLSHPDSVNLIALSLDSPN 171 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHH--------HHCSSSHHHHHHHT--TTS
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHH--------HHcCcHHHHHHHHHHCCCC
Confidence 46678899999999998861 223456778899999998887766553 4667889999999999999
Q ss_pred hHHHHHHHHHHHHhc
Q 002999 470 PQCQVSTLRILCGIA 484 (859)
Q Consensus 470 ~~~~~~a~~aL~~La 484 (859)
+.++..++..|..+|
T Consensus 172 ~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 172 IKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998887
No 268
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.92 E-value=2.5 Score=42.53 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhccChhhhhHhhhh------hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh--HHHHhcCCh
Q 002999 255 KEKEYAVKLLLEFCIDEAYCKSVASE------KGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV--QPLAAAGRF 326 (859)
Q Consensus 255 ~~~~~A~~~L~~Ls~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~--~~i~~~G~i 326 (859)
.-+..|+.+|.+|+..+.+...|..+ ...+..|+++|...+++..++-|...|.+|+..++.. ....+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 45889999999999988766555432 2356777888877789999999999999999876543 344567999
Q ss_pred HHHHHHhccCC
Q 002999 327 EPLINRLCQGS 337 (859)
Q Consensus 327 ~~Lv~lL~~~~ 337 (859)
..|+.++.+..
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999996543
No 269
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.67 E-value=34 Score=38.29 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=81.6
Q ss_pred hcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhc-CCCHHHHHHHHHHHHHhccC
Q 002999 193 NAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLI-GNSEKEKEYAVKLLLEFCID 270 (859)
Q Consensus 193 ~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~ 270 (859)
+.|....++..+.....+++...+..|++.|.+.+.. ++-...... -.+..++.-|. ..+.++...+...|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 3455555554443322233348999999999999988 443332222 23444554443 44567888888888777654
Q ss_pred hhhhhHhhhhhChHHH---HHHhhcCCCChHHHHHHHHHHHHhcCC--CcChHHHHh--cCChHHHHHHhccCChHH
Q 002999 271 EAYCKSVASEKGALVL---LSSMTGNLELPALSNLADEVFKKMERI--EEIVQPLAA--AGRFEPLINRLCQGSDNV 340 (859)
Q Consensus 271 ~~~~~~i~~~~g~i~~---Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~~~~~~i~~--~G~i~~Lv~lL~~~~~~~ 340 (859)
-.+... ..+.++. +..+.. +.+++.+..|...+..|+.. ...+..+.+ .+...+|+-.|...++.+
T Consensus 331 ~~~~~l---~~~~l~ialrlR~l~~-se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v 403 (533)
T KOG2032|consen 331 ASNDDL---ESYLLNIALRLRTLFD-SEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV 403 (533)
T ss_pred hhhcch---hhhchhHHHHHHHHHH-hcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH
Confidence 333221 1333443 344444 78888888888777777643 222333332 244556667777666543
No 270
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.65 E-value=0.5 Score=50.42 Aligned_cols=58 Identities=17% Similarity=0.450 Sum_probs=43.8
Q ss_pred ccCcccccccCCCe-----ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhH
Q 002999 77 FLCPLTKQVMKEPV-----VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLA 138 (859)
Q Consensus 77 ~~cpi~~~~m~dPv-----~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~ 138 (859)
-+||||.+-..=|+ .+.|||-|--.|||+|+-. .-...||.|...-...++.|-.++|
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k----~~~~~cp~c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK----KTKMQCPLCSGKATKRQIRPEYALR 67 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh----hhhhhCcccCChhHHHHHHHHHHHH
Confidence 67999999887664 5689999999999999943 2245799996554445666666655
No 271
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.30 E-value=56 Score=38.68 Aligned_cols=204 Identities=17% Similarity=0.133 Sum_probs=108.7
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc----hHHHHHhhC---chHHHHHHhcCCCHHH--HHHHHHHHHHh
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE----SKKIMLEEG---VTKSVIHSLIGNSEKE--KEYAVKLLLEF 267 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~----~r~~i~~~g---~i~~Lv~lL~~~~~~~--~~~A~~~L~~L 267 (859)
+-.|+++|+.-+. +.......-+.. .. .. ..+.+..+| ++..+...+.++.... ...+...+...
T Consensus 313 f~~lv~~lR~~~~----e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~ 386 (574)
T smart00638 313 FLRLVRLLRTLSE----EQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHT 386 (574)
T ss_pred HHHHHHHHHhCCH----HHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 4456777766554 333333333332 11 22 234444455 5666666677654222 22222222222
Q ss_pred ccChhhhhHhhhhhChHHHHHHhhcC---CCChHHHHHHHHHHHHhc----CCCcChHHHHhcCChHHHHHHhc----cC
Q 002999 268 CIDEAYCKSVASEKGALVLLSSMTGN---LELPALSNLADEVFKKME----RIEEIVQPLAAAGRFEPLINRLC----QG 336 (859)
Q Consensus 268 s~~~~~~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~~a~~aL~nL~----~~~~~~~~i~~~G~i~~Lv~lL~----~~ 336 (859)
...+. ...+..+..++.. ...+.+...|..++.+|. .....+...+....++.|.+.|. .+
T Consensus 387 ~~~Pt--------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 458 (574)
T smart00638 387 ARYPT--------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKG 458 (574)
T ss_pred hhcCC--------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcC
Confidence 22221 2355666666661 234456666666666654 33332212222346677777663 34
Q ss_pred ChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC-----ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHH
Q 002999 337 SDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS-----KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDI 411 (859)
Q Consensus 337 ~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~-----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~l 411 (859)
+.+.+.....+|+|+.... .++.|...+. +..++..|+++|+.++...... +-+.|+.+
T Consensus 459 ~~~~~~~~LkaLGN~g~~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~i 522 (574)
T smart00638 459 DEEEIQLYLKALGNAGHPS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLPI 522 (574)
T ss_pred CchheeeHHHhhhccCChh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHH
Confidence 4555666677777766522 2344444443 5678999999999987533221 23567777
Q ss_pred HhccCCCCHHHHHHHHHHHH
Q 002999 412 LFKSHDASPELKELAAATIA 431 (859)
Q Consensus 412 L~~~~~~~~~~~~~a~~~L~ 431 (859)
.... ..+.++|..|..+|.
T Consensus 523 ~~n~-~e~~EvRiaA~~~lm 541 (574)
T smart00638 523 YLNR-AEPPEVRMAAVLVLM 541 (574)
T ss_pred HcCC-CCChHHHHHHHHHHH
Confidence 7653 356788888877776
No 272
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.02 E-value=12 Score=39.40 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhC--chHHHHHHhcCC----CHHHHHHHHHHHHHhccC
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEG--VTKSVIHSLIGN----SEKEKEYAVKLLLEFCID 270 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g--~i~~Lv~lL~~~----~~~~~~~A~~~L~~Ls~~ 270 (859)
...+..++...........+.-++++++|+-.++..+..+.... .+-..+..+... +...+..++.++.|++..
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~ 187 (268)
T PF08324_consen 108 ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVL 187 (268)
T ss_dssp HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 44555665554322333789999999999999988888877643 344444444443 577888888999999864
Q ss_pred hhhhh-HhhhhhChHHHHHHhh-cCCCChHHHHHHHHHHHHhcCCCcChHHHHhc
Q 002999 271 EAYCK-SVASEKGALVLLSSMT-GNLELPALSNLADEVFKKMERIEEIVQPLAAA 323 (859)
Q Consensus 271 ~~~~~-~i~~~~g~i~~Lv~lL-~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~ 323 (859)
-.... .--.....+..++..+ ....|+++...++.+|.+|...+.....+.+.
T Consensus 188 ~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~ 242 (268)
T PF08324_consen 188 LHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKS 242 (268)
T ss_dssp HHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCC
T ss_pred HHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence 22111 0000122566666633 33478999999999999999766665555553
No 273
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=81.86 E-value=6.1 Score=38.87 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=61.8
Q ss_pred HHHHhhCchHHHHHHhcC---------CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHH
Q 002999 234 KIMLEEGVTKSVIHSLIG---------NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLAD 304 (859)
Q Consensus 234 ~~i~~~g~i~~Lv~lL~~---------~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 304 (859)
+.+.+.||+..|+.+|.. .+......++.+|..+..+..-...+...++++..|+..|. +.+..++..++
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~-s~~~~~r~~~l 179 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLD-SPNIKTRKLAL 179 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345567889999998853 33567788999999999888777777778999999999999 89999999999
Q ss_pred HHHHHhc
Q 002999 305 EVFKKME 311 (859)
Q Consensus 305 ~aL~nL~ 311 (859)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998886
No 274
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.20 E-value=0.72 Score=36.79 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=34.3
Q ss_pred ccCcccccccCC-Ceec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 77 FLCPLTKQVMKE-PVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 77 ~~cpi~~~~m~d-Pv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
=.||-|.--=.| |.+. -|.|.|-+.||.+|+... +....||.+|+..
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~---tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTP---TSQGQCPMCRQTW 80 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCc---cccccCCcchhee
Confidence 456666544444 7666 788999999999999873 2245899999865
No 275
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=81.07 E-value=9.2 Score=37.92 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCc-chHHHHHHHHHHHhcccC--cchHHHHHhhCchH
Q 002999 167 VDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSV-GTILRSKALMALLSMAKD--EESKKIMLEEGVTK 243 (859)
Q Consensus 167 ~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~-~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~ 243 (859)
..++..|+..|+-++. +++.|..+.++..--.|-.+|...+... -...|..++..++.|..+ ...-..+.....+|
T Consensus 114 snRvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 114 SNRVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred hhHHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 3455568888988876 6667777887765444455554322211 116788999999999988 33455667788999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhh-------hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcC
Q 002999 244 SVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASE-------KGALVLLSSMTGNLELPALSNLADEVFKKMERIEEI 316 (859)
Q Consensus 244 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~ 316 (859)
..++.+..++.-.+..|+-++..+..++.--+-|..+ ...+..++.-+-+.+.....+.+.++-..||.++..
T Consensus 193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~a 272 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHA 272 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhH
Confidence 9999999998777888888888777665432222211 122233333222245556667777776677766554
Q ss_pred hH
Q 002999 317 VQ 318 (859)
Q Consensus 317 ~~ 318 (859)
|.
T Consensus 273 R~ 274 (315)
T COG5209 273 RA 274 (315)
T ss_pred HH
Confidence 43
No 276
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.82 E-value=14 Score=44.18 Aligned_cols=207 Identities=17% Similarity=0.081 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccCh--------------hhhhHhhh
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE--------------AYCKSVAS 279 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~--------------~~~~~i~~ 279 (859)
+.++.|+..|..+.+.--.|..-...-.-..|+.+|+.+ ++-..++.++.-+..+. -++++++
T Consensus 789 dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF- 865 (1030)
T KOG1967|consen 789 DLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF- 865 (1030)
T ss_pred chhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-
Confidence 566777777666543210011001112344566666653 22334444444333331 2455665
Q ss_pred hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHH-h-cCChHHHHHHhccCChHHHHHHHHHHHHhcCCCcc
Q 002999 280 EKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLA-A-AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSC 357 (859)
Q Consensus 280 ~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~-~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~ 357 (859)
...+|.|++... +.+...+..-..+|.++-.+-.- ..+. + ....|.|++-|.-.+..+|....++|.-+......
T Consensus 866 -~~ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 866 -CDIVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred -HhhHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 458999999888 66666677777788887654222 2222 2 24677788888888888888888887765432222
Q ss_pred -HHHHHHhhHHHHHHHhC--C---hhHHHHHHHHHHHhhCC-CcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 002999 358 -KEHIARQCAKVLVELLS--K---PAGRAASLKALYNLSGL-DDNATILVDSALLPALTDILFKSHDASPELKELAAAT 429 (859)
Q Consensus 358 -~~~i~~~gi~~Lv~lL~--~---~~~~~~a~~aL~~Ls~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~ 429 (859)
...-...-+|.++.+=+ + ..++..|+.+|..|... +...-.-....++..|+..|. |+..-+|..|..+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld---DkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD---DKKRLVRKEAVDT 1018 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC---cHHHHHHHHHHHH
Confidence 11112233566666555 2 56899999999999984 433333344556778888884 3556777777665
No 277
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=80.77 E-value=0.96 Score=39.17 Aligned_cols=51 Identities=16% Similarity=0.406 Sum_probs=31.4
Q ss_pred CcccCcccccccCCCeec-CCC-----chhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCC
Q 002999 75 KNFLCPLTKQVMKEPVVL-ESA-----QAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLEL 131 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~-~~g-----~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l 131 (859)
+.+.||||..+-+.=|-+ -++ .-||..++.+.... ...=|++|+|++....
T Consensus 39 e~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~------~~~HPLSREpit~sMI 95 (113)
T PF06416_consen 39 EHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVRE------GAPHPLSREPITPSMI 95 (113)
T ss_dssp HHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHC------T---TTT-----TTTE
T ss_pred HHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHc------CCCCCCccCCCChhhE
Confidence 569999999999998854 222 46999999999987 4678999999876544
No 278
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.21 E-value=1.8 Score=45.91 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=32.2
Q ss_pred ccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
-.|-||.+-.++-+-+||||+.| |+.-... .+.||+||+.+
T Consensus 306 ~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-------l~~CPvCR~rI 346 (355)
T KOG1571|consen 306 DLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-------LPQCPVCRQRI 346 (355)
T ss_pred CceEEecCCccceeeecCCcEEE--chHHHhh-------CCCCchhHHHH
Confidence 56999999999999999999988 4433222 46799998754
No 279
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.91 E-value=1.4 Score=47.33 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=41.3
Q ss_pred CCcccCcccccccCCCe-----e---cCCCchhcHHHHHHHHHhcc-cCCCCCCCCCCCcccC
Q 002999 74 FKNFLCPLTKQVMKEPV-----V---LESAQAYERKAIEYWFERCL-EDGRDPTCPVTGQVLK 127 (859)
Q Consensus 74 ~~~~~cpi~~~~m~dPv-----~---~~~g~t~~r~~I~~~~~~~~-~~~~~~~cP~t~~~l~ 127 (859)
-.++.|=||++.-.+++ . ..|.|+||-.||..|-...+ +..-...||+||.+.+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46799999999999987 3 46999999999999986521 1111468999987653
No 280
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=79.31 E-value=27 Score=40.43 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCcchhHHHh---cCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHH
Q 002999 172 KALDIVFKISEEHPSNRYRVRN---AGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHS 248 (859)
Q Consensus 172 ~al~~L~~l~~~~~~~r~~i~~---~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~l 248 (859)
-|+..|+-+...+..+-..+-. ...+..++..++ .++ ..+..++++|.|+-.++.+++.+... ...+...
T Consensus 563 PalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~----an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~~ 635 (745)
T KOG0301|consen 563 PALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADP----ANQLLVVRCLANLFSNPAGRELFMSR--LESILDP 635 (745)
T ss_pred hHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cch----hHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhhh
Confidence 3666666666644443322221 123444555544 334 78899999999999998888877654 2222222
Q ss_pred h---cC-CCHHHHHHHHHHHHHhccC--hhhhhHhhhhhChHHHHHHh----hcCCCChHHHHHHHHHHHHhcCCCcChH
Q 002999 249 L---IG-NSEKEKEYAVKLLLEFCID--EAYCKSVASEKGALVLLSSM----TGNLELPALSNLADEVFKKMERIEEIVQ 318 (859)
Q Consensus 249 L---~~-~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~l----L~~~~~~~~~~~a~~aL~nL~~~~~~~~ 318 (859)
+ ++ ++...+..-+....|++.. ..+.+ .|..+.|... +...+|.+..-..+.+|.+|+..+.+..
T Consensus 636 ~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 636 VIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 2 22 2344444444444455432 11111 2333444333 3344566667788999999999999999
Q ss_pred HHHhcCChHHHHHHhcc
Q 002999 319 PLAAAGRFEPLINRLCQ 335 (859)
Q Consensus 319 ~i~~~G~i~~Lv~lL~~ 335 (859)
++++.-.+..++.-+++
T Consensus 711 ~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 99888888888887754
No 281
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=78.24 E-value=0.66 Score=54.87 Aligned_cols=50 Identities=14% Similarity=0.371 Sum_probs=40.9
Q ss_pred ccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCC
Q 002999 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLEL 131 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l 131 (859)
+.|++|.+ ..+||++.|||.+|++|+.+.+.. .....||.|+..+....+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~----~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQ----SENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccc----ccCCCCcHHHHHHHHHHH
Confidence 78999999 888889999999999999999986 223479999877654433
No 282
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=78.05 E-value=1.7e+02 Score=35.54 Aligned_cols=227 Identities=15% Similarity=0.120 Sum_probs=135.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCC-cChHHHHhcCChHHHHHHh-ccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHH
Q 002999 293 NLELPALSNLADEVFKKMERIE-EIVQPLAAAGRFEPLINRL-CQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLV 370 (859)
Q Consensus 293 ~~~~~~~~~~a~~aL~nL~~~~-~~~~~i~~~G~i~~Lv~lL-~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv 370 (859)
.++.|.....+..++...+... -+.. +... .+...+..+ .+.++.++..+.++++..+...- ..-.....+..|.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQ-LLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLSLQPMILDGLL 536 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchh-HHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccccchHHHHHHH
Confidence 3566776667777766555331 1211 1110 112233333 34566677777777666551110 0001122236677
Q ss_pred HHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccc
Q 002999 371 ELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKL 448 (859)
Q Consensus 371 ~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~ 448 (859)
++.. +.++.-....+|...++.+.......+.-+.|.++.+....+ .++.+...+-.++..|+....+...
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~~~~~g~------ 609 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQIAANYGP------ 609 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhhcc------
Confidence 7776 677777788889999888876666677777887777655433 3457777888888777664433331
Q ss_pred cCcccccchHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHh-hcCCChhHHHHHHH
Q 002999 449 GHSMQSESIVSSLLGLLSGVS----PQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQF-LEHPEVEHRTYAFR 523 (859)
Q Consensus 449 ~~~l~~~~~i~~Ll~LL~~~~----~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~A~~ 523 (859)
..+..+|.|+..|.... +.....++.+|.-+-+...+- +.+.+. +-+.|++.+. +.+++.+.-+++..
T Consensus 610 ----m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p--L~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~E 682 (1005)
T KOG2274|consen 610 ----MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP--LPNLLI-CYAFPAVAKITLHSDDHETLQNATE 682 (1005)
T ss_pred ----hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC--ccHHHH-HHHhHHhHhheeecCChHHHHhHHH
Confidence 24678999999997665 577777888887665552220 111111 2356777775 56666788888999
Q ss_pred HHHHHhhhccHHH
Q 002999 524 LTRILSERIGQDL 536 (859)
Q Consensus 524 ~L~~Ls~~~~~~~ 536 (859)
+|+.+.....++.
T Consensus 683 cLra~Is~~~eq~ 695 (1005)
T KOG2274|consen 683 CLRALISVTLEQL 695 (1005)
T ss_pred HHHHHHhcCHHHH
Confidence 9988864333333
No 283
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=76.85 E-value=40 Score=35.36 Aligned_cols=171 Identities=23% Similarity=0.190 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhccChhhhhHhhhhhCh-HHHHHHhhc---CCCChHHHHHHHHHHHHhcCCCcChHHHHhcC--ChHH
Q 002999 255 KEKEYAVKLLLEFCIDEAYCKSVASEKGA-LVLLSSMTG---NLELPALSNLADEVFKKMERIEEIVQPLAAAG--RFEP 328 (859)
Q Consensus 255 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~---~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G--~i~~ 328 (859)
+.+--+..+++-+..++.....+....+. ...+..++. .+..+..+.-++++++|+-.++..+..+.... .+..
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILE 157 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHH
Confidence 33556667777777776655555433222 344444444 23566778889999999999999988877653 4555
Q ss_pred HHHHhccC----ChHHHHHHHHHHHHhcCCCcc-H--HHHHHhhHHHHHH-HhC---ChhHHHHHHHHHHHhhCCCcchH
Q 002999 329 LINRLCQG----SDNVQIEMAFLVGKLTLTNSC-K--EHIARQCAKVLVE-LLS---KPAGRAASLKALYNLSGLDDNAT 397 (859)
Q Consensus 329 Lv~lL~~~----~~~~~~~aa~~L~~la~~~~~-~--~~i~~~gi~~Lv~-lL~---~~~~~~~a~~aL~~Ls~~~~~~~ 397 (859)
.+..+... +..++..+|..+.|++..-.. + ....-.-+..+++ +.. +++....++-||.+|...+....
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 55555444 678899999999999751100 0 0001111234444 333 88999999999999997765555
Q ss_pred HHHH-cCcHHHHHHHHhccCCCCHHHHHHHH
Q 002999 398 ILVD-SALLPALTDILFKSHDASPELKELAA 427 (859)
Q Consensus 398 ~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~a~ 427 (859)
.+.+ .|+-..+-..-.. ...+.+++-+.
T Consensus 238 ~~~~~l~~~~~~~~~~~~--~~e~ri~~v~~ 266 (268)
T PF08324_consen 238 QLAKSLDVKSVLSKKANK--SKEPRIKEVAA 266 (268)
T ss_dssp HHCCCCTHHHHHHHHHHH--TTSHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHhc--ccchHHHHHhc
Confidence 4444 3444444333322 23445555443
No 284
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=76.75 E-value=1.2 Score=36.07 Aligned_cols=52 Identities=13% Similarity=0.333 Sum_probs=24.6
Q ss_pred cccCcccccccC-C---Ceec----CCCchhcHHHHHHHHHhcccCCC--C---CCCCCCCcccC
Q 002999 76 NFLCPLTKQVMK-E---PVVL----ESAQAYERKAIEYWFERCLEDGR--D---PTCPVTGQVLK 127 (859)
Q Consensus 76 ~~~cpi~~~~m~-d---Pv~~----~~g~t~~r~~I~~~~~~~~~~~~--~---~~cP~t~~~l~ 127 (859)
+..|+||..... + |++. .||.+|=..|+.+||..-.+... . ..||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 2 5543 57899999999999986332221 1 24999988764
No 285
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.21 E-value=1.7 Score=47.50 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=27.5
Q ss_pred eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 90 VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 90 v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+++||.|.|-|.|+++|.+.. +-.||+||.+|.
T Consensus 602 m~tPC~HifH~~CL~~WMd~y-----kl~CPvCR~pLP 634 (636)
T KOG0828|consen 602 MLTPCHHIFHRQCLLQWMDTY-----KLICPVCRCPLP 634 (636)
T ss_pred cccchHHHHHHHHHHHHHhhh-----cccCCccCCCCC
Confidence 356999999999999999841 458999999874
No 286
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.66 E-value=11 Score=42.49 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=62.9
Q ss_pred CCchHHHhh-hccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcc
Q 002999 726 NCIKPLVDL-LAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVE 804 (859)
Q Consensus 726 g~i~~Lv~l-L~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~ 804 (859)
|+|..|+.. ..+.|.+|+.+|.-||+-+..+ + .+.+...+++|.++-++.+|.-.+.+|.-.+...
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~-D------------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD-D------------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEec-C------------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 556666666 5678888888888888887765 3 2455666677766567777777777777776432
Q ss_pred ccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHH
Q 002999 805 GHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNL 842 (859)
Q Consensus 805 ~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L 842 (859)
++.....-|-.++.+.+.-+|+.|..++.-+
T Consensus 618 -------G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 618 -------GDKVATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred -------ccHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 1111223455556666677777777766543
No 287
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=75.63 E-value=6.6 Score=33.66 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=60.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHH
Q 002999 458 VSSLLGLLSGVSPQCQVSTLRILCGIASSPQ-AAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDL 536 (859)
Q Consensus 458 i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~ 536 (859)
....+..|.++.+.+|.+++..|..|..... .. +...+.+..+...|+++++.+-.+|.+.|..|+...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~------~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-- 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPV------IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-- 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcch------hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH--
Confidence 4556667788888999999999999987765 21 11224567788899999999999999999999844433
Q ss_pred HHhcCCCCchHHHHHhhcc
Q 002999 537 AYALKPFDKLVLFKDKILD 555 (859)
Q Consensus 537 ~~~l~~~g~i~~Lv~lL~~ 555 (859)
..++.|++...+
T Consensus 77 -------~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -------EVLPILLDEYAD 88 (92)
T ss_pred -------HHHHHHHHHHhC
Confidence 345555555443
No 288
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.12 E-value=58 Score=37.24 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=74.1
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhh
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYC 274 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~ 274 (859)
|.+..+++-+.+.+. .+|...+..|..+...-.--......|.+..|.+-+-...+.+|..|+.+|..+-....+-
T Consensus 91 ~~~~h~lRg~eskdk----~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 91 GTFYHLLRGTESKDK----KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHhcccCcch----hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 444555555566666 9999999999988765222224445677888887776667889999999998765332211
Q ss_pred hHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHH
Q 002999 275 KSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPL 320 (859)
Q Consensus 275 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i 320 (859)
+......|+.++++.++.+++.. +|.|+..++....-+
T Consensus 167 -----en~~~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p~I 204 (885)
T COG5218 167 -----ENRIVNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYPCI 204 (885)
T ss_pred -----HHHHHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcchhH
Confidence 12234477778886666677665 457777665544433
No 289
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.26 E-value=2.4 Score=45.09 Aligned_cols=48 Identities=15% Similarity=0.355 Sum_probs=33.4
Q ss_pred ccCcccccccCCC--e--ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 77 FLCPLTKQVMKEP--V--VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 77 ~~cpi~~~~m~dP--v--~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
-.|.||-+.+-.- + +-.|||+|.-.|+.+||+.+ ..+.+||.|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~---Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGD---PSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccC---CccCCCCceeeccc
Confidence 4688885544321 1 23599999999999999974 33468999984443
No 290
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=73.99 E-value=15 Score=29.88 Aligned_cols=66 Identities=15% Similarity=-0.030 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHh
Q 002999 518 RTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEA 586 (859)
Q Consensus 518 ~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~ 586 (859)
...|+|++.++. .++.-...+.+.+.++.++++..+.+. ..+|--|..+|+-++......+.+-+.
T Consensus 4 lKaaLWaighIg--ss~~G~~lL~~~~iv~~iv~~a~~s~v-~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIG--SSPLGIQLLDESDIVEDIVKIAENSPV-LSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHh--cChHHHHHHhhcCHHHHHHHHHHhCCc-cchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 356899999996 444444556666899999999998887 488999999999998865554444443
No 291
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=73.91 E-value=17 Score=41.88 Aligned_cols=114 Identities=17% Similarity=0.175 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhcC
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIG 251 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~~ 251 (859)
|..-|....+.-|.... .++..+++++...+. .+|..|++.|-.+|.+ ++.-..+ +..|+.+|.+
T Consensus 42 aaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~----~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~t 107 (556)
T PF05918_consen 42 AAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDV----QIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQT 107 (556)
T ss_dssp HHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSH----HHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT-
T ss_pred HHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccH----HHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhc
Confidence 55556666555554443 355678888887777 8999999999999987 4444444 5678889998
Q ss_pred CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc--CCCChHHHHHHHHHHH
Q 002999 252 NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG--NLELPALSNLADEVFK 308 (859)
Q Consensus 252 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~~a~~aL~ 308 (859)
+++.....+-.+|..|-..+. .+.+..|..-+. .++++.+++.++..|.
T Consensus 108 dd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 108 DDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 887776666666666544322 334444444443 2456677887776653
No 292
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.68 E-value=95 Score=37.34 Aligned_cols=170 Identities=13% Similarity=0.111 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHH-hhc
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSS-MTG 292 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-lL~ 292 (859)
.++..++..|+.+.........+...+.+......|+..++-+--+|...+..|+.-. ....+|.|.. ..+
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy--------~e~il~dL~e~Y~s 813 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY--------PEDILPDLSEEYLS 813 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc--------chhhHHHHHHHHHh
Confidence 6788888889888876555566777888999999999988877778888666665542 1335566665 333
Q ss_pred --CCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCcc--HHHHHHhhHH
Q 002999 293 --NLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSC--KEHIARQCAK 367 (859)
Q Consensus 293 --~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~--~~~i~~~gi~ 367 (859)
+...++-+-..-+++.++... .+-...-. +-.+...+...++++...+..+...+++++.-... .. .......
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~ 891 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQ 891 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHH
Confidence 111123333344555555421 11111100 12334455555666666777777888887752211 11 1122234
Q ss_pred HHHHHhC---ChhHHHHHHHHHHHhhCCC
Q 002999 368 VLVELLS---KPAGRAASLKALYNLSGLD 393 (859)
Q Consensus 368 ~Lv~lL~---~~~~~~~a~~aL~~Ls~~~ 393 (859)
.++.+.+ ++.++++|+..+..+-.+.
T Consensus 892 ~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 892 LILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 4455555 6778899988888886544
No 293
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=73.68 E-value=1e+02 Score=34.55 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=81.6
Q ss_pred cchHHHHHHHHHHHHhcC-CcchhHHHhcCcHHHHHHHHhc-CCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHH
Q 002999 167 VDGLDKALDIVFKISEEH-PSNRYRVRNAGVVLLIVKLLKS-SSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKS 244 (859)
Q Consensus 167 ~~~~~~al~~L~~l~~~~-~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~ 244 (859)
.+..+.|+..|..+..++ ..-+..... ..+..+++.|+. .+. ..+..|++.|..++.+..-|-.=...-+|..
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~----~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K 375 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDE----IIKKLALRVLREMLTNQPARLFDSTEIAICK 375 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhh----HHHHHHHHHHHHHHHhchHhhhchHHHHHHH
Confidence 344456888777765544 333332222 233456677765 455 8899999999999887322211111224555
Q ss_pred HHHHhcCCCHHHHHHHHH-HHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHH--
Q 002999 245 VIHSLIGNSEKEKEYAVK-LLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLA-- 321 (859)
Q Consensus 245 Lv~lL~~~~~~~~~~A~~-~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~-- 321 (859)
++..-+..++++...|.. ++.-++...... .|..+..++. ..|......++..+..|+..=. ...+.
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Il-t~D~~~~~~~iKm~Tkl~e~l~-~EeL~~l 445 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLIL-TADEPRAVAVIKMLTKLFERLS-AEELLNL 445 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHh-cCcchHHHHHHHHHHHHHhhcC-HHHHHHh
Confidence 555555555555545444 344444433221 2333444444 3344333334434444432100 01111
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHH
Q 002999 322 AAGRFEPLINRLCQGSDNVQIEMAFLVG 349 (859)
Q Consensus 322 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~ 349 (859)
=....|.+++--.+.+..++..+.-+|.
T Consensus 446 l~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 446 LPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred hhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 1134555555555555555555555544
No 294
>PF04641 Rtf2: Rtf2 RING-finger
Probab=72.39 E-value=2.7 Score=43.91 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=31.3
Q ss_pred ccCcccccccCCCeec-CCCchhcHHHHHHHHHhc
Q 002999 77 FLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERC 110 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~ 110 (859)
++|+|+++.+++||+. .-|+-|.+.+|.+|+...
T Consensus 35 ~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 35 THCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 8899999999999976 579999999999999983
No 295
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=72.27 E-value=11 Score=30.72 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCCccHHHHHH
Q 002999 300 SNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLC-QGSDNVQIEMAFLVGKLTLTNSCKEHIAR 363 (859)
Q Consensus 300 ~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~la~~~~~~~~i~~ 363 (859)
.+.|++++.+++..+.....+-+.+.++.++++.. ++...+|-.+--+|+-++.+.+..+.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 46789999999998888888888899999999986 45566666666677777766655555543
No 296
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.05 E-value=2.3e+02 Score=34.17 Aligned_cols=193 Identities=16% Similarity=0.161 Sum_probs=91.7
Q ss_pred cccCCCCCcchhhhHhHHHHHHHhcccccHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHH
Q 002999 124 QVLKSLELKPNIGLAGAIEEWVNRNVEVQVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKL 203 (859)
Q Consensus 124 ~~l~~~~l~pn~~l~~~I~~w~~~~~~~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~l 203 (859)
+.+.+.-..||..+|..-++..+.++ ++-+..-|..++.+ .+-+.|..-++.+|+..+..-.-+.. +-+..+++-
T Consensus 337 ~~i~e~VvlpN~~lR~eDeElFED~p---leYiRRDlEGsDvd-TRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~ 411 (960)
T KOG1992|consen 337 AQICEKVVLPNLILREEDEELFEDNP---LEYIRRDLEGSDVD-TRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQ 411 (960)
T ss_pred HHHHHhhcccccccchhhHHHhccCH---HHHHHHhcccCCcc-hhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHH
Confidence 34556778899999988888777753 55555556644333 34445677788888765433222222 122222221
Q ss_pred -HhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhC----c----hHHHHHHhcC----CCHHHHHHHHHHHHHhcc
Q 002999 204 -LKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEG----V----TKSVIHSLIG----NSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 204 -L~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g----~----i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~ 269 (859)
-++++.++ .-...+......++.. ..-+.-+-... . ...+..-|.+ ..+-.+..+...+.-.=
T Consensus 412 y~~nPS~nW--k~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR- 488 (960)
T KOG1992|consen 412 YSKNPSGNW--KKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFR- 488 (960)
T ss_pred hccCCCccc--cccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeec-
Confidence 12222222 2233333333333332 11111110000 0 0111111222 11222222222111110
Q ss_pred ChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHH
Q 002999 270 DEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEP 328 (859)
Q Consensus 270 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~ 328 (859)
+.-.++.+ -..+|.+++.|+ ++...+-..|+.++-.+-.- +.+...+.-++-++|
T Consensus 489 ~ql~~~~l---m~~~p~li~~L~-a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap 544 (960)
T KOG1992|consen 489 NQLGKEHL---MALLPRLIRFLE-AESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAP 544 (960)
T ss_pred ccCChHHH---HHHHHHHHHhcc-CcchHHHHHHHHHHHhccccccCccccccchhhcch
Confidence 01111122 227899999999 88888889999998888653 333555555555554
No 297
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=71.42 E-value=1.7e+02 Score=34.57 Aligned_cols=131 Identities=14% Similarity=0.017 Sum_probs=86.8
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHH
Q 002999 322 AAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATI 398 (859)
Q Consensus 322 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~ 398 (859)
...++|.|..-+...+..+|..+...+...+..-+ -..+.+..+|.|-++-. +..++.+++.|+..+. +.
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~ 459 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID-VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QR 459 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HH
Confidence 34466777777888888888888888877765443 22333444566666533 7788999999999987 33
Q ss_pred HHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCC
Q 002999 399 LVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGV 468 (859)
Q Consensus 399 i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~ 468 (859)
+-..-+++.+..+++.....++.+.-....+..++.....+.. .+..+.++|.++.+...+
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~---------ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGV---------EVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccce---------eeehhhhhhhhhhhhhcc
Confidence 3444556666666655334567888888888888876654431 355577777777765443
No 298
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.82 E-value=1.4e+02 Score=36.14 Aligned_cols=227 Identities=11% Similarity=0.087 Sum_probs=127.5
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 002999 407 ALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASS 486 (859)
Q Consensus 407 ~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~ 486 (859)
++-+.+.+..++...++-.++..|+.+...-.... .+..++++...+..|++.++-+.-+|+..+..||.-
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~---------~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKAT---------LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV 798 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhh---------hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh
Confidence 34445544445667888899999998877542222 466688899999999999998888888876666653
Q ss_pred ChhHHHHHHHHhhCCCHHHHHH-hhcCCC---hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhH
Q 002999 487 PQAAESVATHIKSGDGIKYIIQ-FLEHPE---VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCE 562 (859)
Q Consensus 487 ~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~---~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~ 562 (859)
-. ...++.|.. ..+..+ .+.+...-.++.++....++-...... -.+....+.+++++. .-
T Consensus 799 y~-----------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~--~~ 863 (982)
T KOG4653|consen 799 YP-----------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDH--EF 863 (982)
T ss_pred cc-----------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchH--HH
Confidence 11 123566666 332222 233444446777766444433322222 244555666665554 66
Q ss_pred HHHHHHHHHHhcCCcHHH--HHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHH--
Q 002999 563 RSDAACILANIQLSEEEV--KTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVR-- 638 (859)
Q Consensus 563 ~~~A~~~L~~L~~~~~~~--~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~-- 638 (859)
+..+++.+++|+.-.... .++.+ .+..+.....+.. ...+...++-.+..+..++..+.....+
T Consensus 864 RaSS~a~lg~Lcq~~a~~vsd~~~e------v~~~Il~l~~~d~------s~~vRRaAv~li~~lL~~tg~dlLpilr~~ 931 (982)
T KOG4653|consen 864 RASSLANLGQLCQLLAFQVSDFFHE------VLQLILSLETTDG------SVLVRRAAVHLLAELLNGTGEDLLPILRLL 931 (982)
T ss_pred HHhHHHHHHHHHHHHhhhhhHHHHH------HHHHHHHHHccCC------chhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 888899999887533321 22222 2222222211111 1123455666666666554433333221
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHhhhh
Q 002999 639 EQRLMTIFRDQLSFPSKARVKQLAAHGLKNL 669 (859)
Q Consensus 639 ~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l 669 (859)
-.+....+......+.++.+|.+|..++..+
T Consensus 932 l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 932 LIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 2233444555555544677888888888654
No 299
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=70.07 E-value=1.9e+02 Score=32.45 Aligned_cols=141 Identities=14% Similarity=0.116 Sum_probs=85.3
Q ss_pred HHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHH-HHHHHhhcCCCcccc
Q 002999 367 KVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAA-ATIANVVSNPGCWEL 442 (859)
Q Consensus 367 ~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~-~~L~nL~~~~~~~~~ 442 (859)
..+++.|+ +...++.|++.|..++.+...+-.=-..=+|..+++.-. +....+...|. .++.-++++.+...
T Consensus 332 ~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~---ds~~~v~~~Aeed~~~~las~~P~~~- 407 (516)
T KOG2956|consen 332 LLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK---DSQDEVMRVAEEDCLTTLASHLPLQC- 407 (516)
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh---CCchhHHHHHHHHHHHHHHhhCchhH-
Confidence 45667777 677889999999999887654411111123444444433 33333333333 33444555554322
Q ss_pred cccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHH
Q 002999 443 ASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAF 522 (859)
Q Consensus 443 ~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 522 (859)
|..+..++-+.+...-..++..+..++..-.. +++-..+ ....|.+++--++.+..||..|+
T Consensus 408 ---------------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~-EeL~~ll--~diaP~~iqay~S~SS~VRKtaV 469 (516)
T KOG2956|consen 408 ---------------IVNISPLILTADEPRAVAVIKMLTKLFERLSA-EELLNLL--PDIAPCVIQAYDSTSSTVRKTAV 469 (516)
T ss_pred ---------------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH-HHHHHhh--hhhhhHHHHHhcCchHHhhhhHH
Confidence 44555555555555556667777777766332 2333333 25678899999999999999999
Q ss_pred HHHHHHh
Q 002999 523 RLTRILS 529 (859)
Q Consensus 523 ~~L~~Ls 529 (859)
.+|..+.
T Consensus 470 fCLVamv 476 (516)
T KOG2956|consen 470 FCLVAMV 476 (516)
T ss_pred HhHHHHH
Confidence 9998885
No 300
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.00 E-value=2.5 Score=47.86 Aligned_cols=32 Identities=19% Similarity=0.497 Sum_probs=27.2
Q ss_pred ccCcccccccC----CCeecCCCchhcHHHHHHHHH
Q 002999 77 FLCPLTKQVMK----EPVVLESAQAYERKAIEYWFE 108 (859)
Q Consensus 77 ~~cpi~~~~m~----dPv~~~~g~t~~r~~I~~~~~ 108 (859)
++||||..+|- .||.+-||||.||.|.+.--.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh
Confidence 78999976664 599999999999999987653
No 301
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=69.85 E-value=25 Score=33.94 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=65.5
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhh-hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC----Cc
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVAS-EKGALVLLSSMTGNLELPALSNLADEVFKKMERI----EE 315 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~----~~ 315 (859)
.+..+..+|++.+...+-.++.++..+...... +.+.. -.-.+..|+.+|+..+++.+.+.++.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 456788889998888888888888777665321 22211 1236888999999666777788888888888632 34
Q ss_pred ChHHHHhc---CChHHHHHHhccCChHHHHHHHHHHHHh
Q 002999 316 IVQPLAAA---GRFEPLINRLCQGSDNVQIEMAFLVGKL 351 (859)
Q Consensus 316 ~~~~i~~~---G~i~~Lv~lL~~~~~~~~~~aa~~L~~l 351 (859)
..+.+.-. +.++.++++++. ......+..+|..+
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 34444322 344444554443 23344444444443
No 302
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=69.23 E-value=96 Score=37.86 Aligned_cols=184 Identities=12% Similarity=0.083 Sum_probs=108.5
Q ss_pred ccCChHHHHHHHHHHHHhcCCCccHHHH-HHhh-HHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHH
Q 002999 334 CQGSDNVQIEMAFLVGKLTLTNSCKEHI-ARQC-AKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDSALLPAL 408 (859)
Q Consensus 334 ~~~~~~~~~~aa~~L~~la~~~~~~~~i-~~~g-i~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~L 408 (859)
.+..-.-+.+++..+.....+.. +... ...+ +-.++.... +..+...++.+|..|+..-..-..=...++.|.+
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~l 341 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSL 341 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchH
Confidence 34444455556555555444433 1111 1122 233333332 6677788888888888754222222234677888
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 002999 409 TDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQ 488 (859)
Q Consensus 409 v~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~ 488 (859)
+.-+.. ....+++.+..++-..+... .-..+.+.++..+++++|..+..+...+...-....
T Consensus 342 ld~lke---kk~~l~d~l~~~~d~~~ns~---------------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 342 LDRLKE---KKSELRDALLKALDAILNST---------------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HHHhhh---ccHHHHHHHHHHHHHHHhcc---------------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 888754 33466666666666554411 124567788888999999999887776655543311
Q ss_pred hHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHH
Q 002999 489 AAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAY 538 (859)
Q Consensus 489 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~ 538 (859)
....-+..+ .+.++.++....+.+.+||..|..++..+.+..++....
T Consensus 404 ~~~~~~~t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 404 PKTVEKETV--KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred CcCcchhhH--HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 000001111 145788888888999999999999998887655554433
No 303
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.84 E-value=78 Score=37.01 Aligned_cols=212 Identities=16% Similarity=0.137 Sum_probs=118.0
Q ss_pred CChHHHHHHHHHHHHh-cCCCccHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcc-hHHHHHcCcHHHHHH
Q 002999 336 GSDNVQIEMAFLVGKL-TLTNSCKEHIARQCAKVLVELLS---KPAGRAASLKALYNLSGLDDN-ATILVDSALLPALTD 410 (859)
Q Consensus 336 ~~~~~~~~aa~~L~~l-a~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~-~~~i~~~G~i~~Lv~ 410 (859)
.+++++..|.-+|..+ |.+..- -..-.|.|+..|. +|.++.+|+-.|..+..+-.+ .+.. -..|.+
T Consensus 908 sd~~lq~aA~l~L~klMClS~~f----c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEF----CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHHH
Confidence 3566666666666654 222211 1233577888776 778888888777777654321 1111 234555
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhH
Q 002999 411 ILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAA 490 (859)
Q Consensus 411 lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~ 490 (859)
-| .+.+..++..|+.++.+|...+. +--.|-.+.+..+|.+.+.++..-|-..+..++....+.
T Consensus 979 rL---~De~~~V~rtclmti~fLilagq-------------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~ 1042 (1128)
T COG5098 979 RL---GDEDADVRRTCLMTIHFLILAGQ-------------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTM 1042 (1128)
T ss_pred Hh---cchhhHHHHHHHHHHHHHHHccc-------------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccch
Confidence 55 34567899999999998876542 334667778888888888888888888888887765431
Q ss_pred HHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHH-HHHhcCCCCchHHHHHhhccCCCchhHHHHHHHH
Q 002999 491 ESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQD-LAYALKPFDKLVLFKDKILDNQSANCERSDAACI 569 (859)
Q Consensus 491 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~ 569 (859)
. +|.--+..-+.++...-++.--..++-|....+.+ .++.+.+ ....++++...+ ......+++
T Consensus 1043 y---------n~fidifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E----~L~~rl~rc~tq--~qwd~~~~~ 1107 (1128)
T COG5098 1043 Y---------NGFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKE----SLFLRLLRCNTQ--SQWDKLLCS 1107 (1128)
T ss_pred h---------hhhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhh--HHHHHHHHH
Confidence 1 12222333444333222222122333332212221 1112221 122344444443 444567888
Q ss_pred HHHhcCCcHHHHHHHHhc
Q 002999 570 LANIQLSEEEVKTLLEAT 587 (859)
Q Consensus 570 L~~L~~~~~~~~~l~~~g 587 (859)
+.||+........+++.|
T Consensus 1108 l~nLp~k~~~~~~Ll~~g 1125 (1128)
T COG5098 1108 LFNLPDKIAGSGGLLNRG 1125 (1128)
T ss_pred HhcCCccccchhhHhhcc
Confidence 889988666655555544
No 304
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.41 E-value=1.6 Score=32.35 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=32.7
Q ss_pred cCcccccccCCCeecCCCc-hhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 78 LCPLTKQVMKEPVVLESAQ-AYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 78 ~cpi~~~~m~dPv~~~~g~-t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
.|.||.+--.|.|+--||| -+|..|=.+.|.. + +..||+||.++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~----~-~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA----L-HGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHc----c-CCcCcchhhHH
Confidence 3999988777887779998 4566665555543 2 67999999876
No 305
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.60 E-value=5.1 Score=34.21 Aligned_cols=27 Identities=19% Similarity=0.546 Sum_probs=23.9
Q ss_pred CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcc
Q 002999 93 ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQV 125 (859)
Q Consensus 93 ~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~ 125 (859)
.|.|.|--.||.+|+.. +..||+..++
T Consensus 80 ~CNHaFH~hCisrWlkt------r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT------RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh------cCcCCCcCcc
Confidence 68899999999999998 7899998653
No 306
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=67.60 E-value=1.6 Score=50.42 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=27.0
Q ss_pred cCcccccccCCCee---cCCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 78 LCPLTKQVMKEPVV---LESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 78 ~cpi~~~~m~dPv~---~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
.||+|..-+.|-.+ .+|+|.||.+||..|-.- -.+||+++..+
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~------aqTCPiDR~EF 170 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC------AQTCPVDRGEF 170 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh------cccCchhhhhh
Confidence 46666555555442 257777777777777654 45777776554
No 307
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.36 E-value=1.7e+02 Score=30.69 Aligned_cols=215 Identities=15% Similarity=0.118 Sum_probs=120.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccC-hhhhhHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcCCCcChHHHH
Q 002999 244 SVIHSLIGNSEKEKEYAVKLLLEFCID-EAYCKSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKMERIEEIVQPLA 321 (859)
Q Consensus 244 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~~~~~~~~i~ 321 (859)
.|=..|.++++..|..|+..|..+... +... + ...-+..|+.... .-.|......++..|..|........
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L--~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~--- 75 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF--L--SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP--- 75 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--c--cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh---
Confidence 344577888999999998888876543 2111 1 1223556666554 23466666666777777664332111
Q ss_pred hcCChHHHHHHh-c-----cCChHHHHHHHHHHHHhcCCCcc-HHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhC
Q 002999 322 AAGRFEPLINRL-C-----QGSDNVQIEMAFLVGKLTLTNSC-KEHIARQCAKVLVELLS---KPAGRAASLKALYNLSG 391 (859)
Q Consensus 322 ~~G~i~~Lv~lL-~-----~~~~~~~~~aa~~L~~la~~~~~-~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~ 391 (859)
+.+..+++.+ + +-....|..+-..|..+..+... -..++..-+..+++++. ||.....+...+..+..
T Consensus 76 --~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 --ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1123333332 1 22334455555555555433211 11122233466777777 88888888777777765
Q ss_pred CCcchHHHHHcCcHHHHHHHHhc-------c--CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHH
Q 002999 392 LDDNATILVDSALLPALTDILFK-------S--HDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLL 462 (859)
Q Consensus 392 ~~~~~~~i~~~G~i~~Lv~lL~~-------~--~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll 462 (859)
.-+. ....+-|.+.+.. + +++..-.++.-...|.+.-...+ ...+.+++.|+
T Consensus 154 ~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-------------~fa~~~~p~Ll 214 (262)
T PF14500_consen 154 EFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-------------LFAPFAFPLLL 214 (262)
T ss_pred hccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-------------hhHHHHHHHHH
Confidence 4331 2233444444443 1 12222344444455554433322 23467899999
Q ss_pred HhhcCCChHHHHHHHHHHHHhccC
Q 002999 463 GLLSGVSPQCQVSTLRILCGIASS 486 (859)
Q Consensus 463 ~LL~~~~~~~~~~a~~aL~~La~~ 486 (859)
.=|.++.+.++.-++.+|..++..
T Consensus 215 eKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 215 EKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 308
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=66.75 E-value=1.5e+02 Score=36.21 Aligned_cols=185 Identities=15% Similarity=0.164 Sum_probs=107.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHh
Q 002999 243 KSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAA 322 (859)
Q Consensus 243 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~ 322 (859)
+.+-.-+.+.+...+..|+.-+........ ....-...|.+..+.+......|..+...++..|..++..-..--.=..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344444556677788888888887666544 1111112345555555555456777788888888888743211111122
Q ss_pred cCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHH
Q 002999 323 AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILV 400 (859)
Q Consensus 323 ~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~ 400 (859)
.+..|.|+..+.+....++.....++-.++.... .....+....+++ ++..+..+...+......... ...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--KTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC--cCc
Confidence 3678888998887777777666665554433110 1122356667777 888887766555544332221 122
Q ss_pred HcCcHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhhc
Q 002999 401 DSALLPALTDILFK-SHDASPELKELAAATIANVVS 435 (859)
Q Consensus 401 ~~G~i~~Lv~lL~~-~~~~~~~~~~~a~~~L~nL~~ 435 (859)
..+.+..++..+-. .+|.+..++..|..++..+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 23334444444333 246778999999999887644
No 309
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=66.35 E-value=12 Score=34.90 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=48.2
Q ss_pred CchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHH--HHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcc
Q 002999 727 CIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGV--DELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVE 804 (859)
Q Consensus 727 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~--~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~ 804 (859)
=+..||.+|+.+..+-.... ..|+.+ .+. .|+ .+-++++-+..+.+==. +...--+.+|+.+|.+...
T Consensus 23 Qt~~lielLk~~~~~~~~~l----ldLL~~-RV~--PGVD~AA~VKA~FL~~ia~g~~-~~~~Is~~~Av~LLGtM~G-- 92 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFL----LDLLTN-RVP--PGVDEAAYVKAEFLAAIAKGEI-SSPLISPAEAVELLGTMLG-- 92 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHH----HHHHHH-SS----TT-HHHHHHHHHHHHHHTTSS--BTTB-HHHHHHHHTTS-S--
T ss_pred HHHHHHHHHhCCCCccHHHH----HHHHHh-cCC--CCCChHHHHHHHHHHHHHcCCc-cCCCcCHHHHHHHHhhccC--
Confidence 35678888887766533333 333333 332 222 22233333333222111 1122345667777766642
Q ss_pred ccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002999 805 GHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLK 843 (859)
Q Consensus 805 ~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~ 843 (859)
+.. +.+||++|.+.|+.+...|+++|.|-=
T Consensus 93 --------GYN-V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 93 --------GYN-VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp --------STT-HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred --------CCc-HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 222 489999999999999999999998743
No 310
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=65.71 E-value=2.2e+02 Score=31.43 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhcCCC-----HHHHHHHHHHHHHhcc-ChhhhhHhhhhhChHHH
Q 002999 214 ILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGNS-----EKEKEYAVKLLLEFCI-DEAYCKSVASEKGALVL 286 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~ 286 (859)
.+...|+.+|+|+..+ ...+....+......+...+...- .+....-.++|.-|+. ....+.++..+.++++.
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~ 191 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLEL 191 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHH
Confidence 7899999999999988 667777777776666666554221 1233344455555543 34667777777889999
Q ss_pred HHHhhc
Q 002999 287 LSSMTG 292 (859)
Q Consensus 287 Lv~lL~ 292 (859)
+..+|.
T Consensus 192 lt~~le 197 (532)
T KOG4464|consen 192 LTNWLE 197 (532)
T ss_pred HHHHhh
Confidence 999997
No 311
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.38 E-value=4.1 Score=43.28 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=36.5
Q ss_pred ccCcccccccCCCeecCCCch-hcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 77 FLCPLTKQVMKEPVVLESAQA-YERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t-~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
-.|=||+.--+|-|++||-|. .|..|-+..--. +..||+||+++..
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q------~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ------TNNCPICRQPIEE 337 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHHHh------hcCCCccccchHh
Confidence 679999999999999999985 566665544433 5789999998753
No 312
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.23 E-value=3.7e+02 Score=33.93 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=83.1
Q ss_pred hhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCcccccc
Q 002999 613 NIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCAS 692 (859)
Q Consensus 613 ~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 692 (859)
.++..+.-+|.+|..-+.. +-+. -+|.|...|..+.+|.+|..+..+++.|+..-+++-.
T Consensus 938 ~Lq~AAtLaL~klM~iSa~-----fces-~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie-------------- 997 (1251)
T KOG0414|consen 938 ELQAAATLALGKLMCISAE-----FCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE-------------- 997 (1251)
T ss_pred HHHHHHHHHHHHHhhhhHH-----HHHH-HHHHHHHHHhcCCCceeeecchheccchhhhcccccc--------------
Confidence 3566666677777653211 2222 2688999988434999999999999988754322211
Q ss_pred ccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcC
Q 002999 693 LVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREG 772 (859)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g 772 (859)
---+-|-.-|.+.++.|++.|+-.|+.|..+ .+|.=-|
T Consensus 998 ---------------------------------~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---------dmiKVKG 1035 (1251)
T KOG0414|consen 998 ---------------------------------PWTEHLYRRLRDESPSVRKTALLVLSHLILN---------DMIKVKG 1035 (1251)
T ss_pred ---------------------------------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---------hhhHhcc
Confidence 0123566777889999999999999999976 2334447
Q ss_pred ChHHHHHHhhhcCchhHHHHHHHHHH
Q 002999 773 ALDAVVDLFTEVRPGLLQERTVWMLE 798 (859)
Q Consensus 773 ~i~~L~~ll~~~~~~~~~~~A~~~l~ 798 (859)
-+..+..++. .++++++.-|-.-+.
T Consensus 1036 ql~eMA~cl~-D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 1036 QLSEMALCLE-DPNAEISDLAKSFFK 1060 (1251)
T ss_pred cHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence 7777888887 488888877653333
No 313
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=65.09 E-value=83 Score=37.58 Aligned_cols=167 Identities=16% Similarity=0.118 Sum_probs=92.7
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccCh-hhhhHhhhhhChHHHHHHhhc---CCCChHHHHHHHHHHHHhc----C
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE-AYCKSVASEKGALVLLSSMTG---NLELPALSNLADEVFKKME----R 312 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~a~~aL~nL~----~ 312 (859)
++..+..++.++.... ..|+.+|..|.... ... ...+..+..|+. ...++.+...|+.++..|. .
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPT------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCC------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 5667777777654322 34556666654432 111 224455555554 1245566677777766664 2
Q ss_pred CC------cChHHHHhcCChHHHHHHhc----cCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC-----Chh
Q 002999 313 IE------EIVQPLAAAGRFEPLINRLC----QGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS-----KPA 377 (859)
Q Consensus 313 ~~------~~~~~i~~~G~i~~Lv~lL~----~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~-----~~~ 377 (859)
.. ...........++.|...|. .++.+.+..+..+|+|+.. ...++.|...+. +..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~---------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH---------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------GGGHHHHHTTSTTSS-S-HH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC---------chhhHHHHhHhhhccccchH
Confidence 21 11122223346777777664 4566777888889998864 234566666665 456
Q ss_pred HHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002999 378 GRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIA 431 (859)
Q Consensus 378 ~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~ 431 (859)
++..|++||+.++...... +.+.|+.+.... ..+.++|..|..+|.
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~-~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEK-------VREILLPIFMNT-TEDPEVRIAAYLILM 585 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-T-TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCC-CCChhHHHHHHHHHH
Confidence 7888999888885443222 346778888763 356788888887776
No 314
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=65.05 E-value=3.4 Score=48.90 Aligned_cols=45 Identities=16% Similarity=0.525 Sum_probs=34.7
Q ss_pred cCcccccccC--C---Cee--cCCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 78 LCPLTKQVMK--E---PVV--LESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 78 ~cpi~~~~m~--d---Pv~--~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
.||||.-++. | |-- -.|.|.|--+|+-+|+.+ +++.+||+||..+
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S----s~~s~CPlCRsei 1522 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS----SARSNCPLCRSEI 1522 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh----cCCCCCCcccccc
Confidence 3999988865 4 431 246789999999999998 5588999998654
No 315
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=64.57 E-value=1.1e+02 Score=31.76 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=50.2
Q ss_pred cccchHHHHHHhhcCCChH--------HHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCCh--hHHHHHH
Q 002999 453 QSESIVSSLLGLLSGVSPQ--------CQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEV--EHRTYAF 522 (859)
Q Consensus 453 ~~~~~i~~Ll~LL~~~~~~--------~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~A~ 522 (859)
.+..+.++++++++.++.- +-+....+|+.++. |-++.|-.++.+++. -+|..|+
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~---------------G~~~~L~~li~~~~~~~yvR~aa~ 134 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD---------------GDIEPLKELIEDPDADEYVRMAAI 134 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC---------------CCHHHHHHHHhCCcHHHHHHHHHH
Confidence 3456789999998765431 22223334444433 456777788887764 6899999
Q ss_pred HHHHHHhhhccHHHHHhcCCCCchHHHHHh
Q 002999 523 RLTRILSERIGQDLAYALKPFDKLVLFKDK 552 (859)
Q Consensus 523 ~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~l 552 (859)
.+|..+. ..+..-++.+.+ .+..++..
T Consensus 135 ~aL~~l~-~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 135 SALAFLV-HEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHHHHH-HcCCCCHHHHHH--HHHHHHHH
Confidence 9999998 344444455542 44445444
No 316
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=64.29 E-value=1.9e+02 Score=30.25 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=92.7
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCc--------ChHHHHhcCChHHHHHHhccCC----hHHHHHHHHHH
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKMERIEE--------IVQPLAAAGRFEPLINRLCQGS----DNVQIEMAFLV 348 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~--------~~~~i~~~G~i~~Lv~lL~~~~----~~~~~~aa~~L 348 (859)
.|.-+.+.+=|. .+...+.+...|..|...+. ++-.+.=.+.+|.++..+.+++ .......|..|
T Consensus 63 ~Glq~Ll~KGL~---Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 63 EGLQPLLLKGLR---SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred hhHHHHHhCccC---CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 455555555454 23345566777777764322 3444444567777887777666 24556778888
Q ss_pred HHhcCCCccHHHHHHhhHHHHHHHhC------ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHH
Q 002999 349 GKLTLTNSCKEHIARQCAKVLVELLS------KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPEL 422 (859)
Q Consensus 349 ~~la~~~~~~~~i~~~gi~~Lv~lL~------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 422 (859)
+.+|..... .++..++.... ..+....++..|+.--. ++ .+...+..|+.+|.+ ...-+
T Consensus 140 a~~a~~~~~------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n---~~~w~ 204 (262)
T PF14225_consen 140 AQVAEAQGL------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLEN---GPPWL 204 (262)
T ss_pred HHHHHhCCC------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhC---CcHHH
Confidence 887742211 11111111111 22334444444443211 11 123346678888865 55789
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCC
Q 002999 423 KELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVS 469 (859)
Q Consensus 423 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~ 469 (859)
+...+.+|..+-...+-... ...+.+.+++++|.+..
T Consensus 205 ~~~~L~iL~~ll~~~d~~~~----------~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 205 RRKTLQILKVLLPHVDMRSP----------HGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHHHHHhccccCCCC----------cchHHHHHHHHHhCCcc
Confidence 99999999999877655431 34668999999997653
No 317
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=64.16 E-value=1.1e+02 Score=35.28 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=78.6
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHH-
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKE- 359 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~- 359 (859)
.|.+..+++-+. +.|..++..++.+|.-++..-.......-.|.+..|...+-+..+.++.+|..+|..+-....|-+
T Consensus 90 ~~~~~h~lRg~e-skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTE-SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhccc-CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 567777777777 889999999999999998765555566677888889988888889999999999988765443321
Q ss_pred HHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHH
Q 002999 360 HIARQCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATIL 399 (859)
Q Consensus 360 ~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i 399 (859)
.+ ...|+.+++ +.+++.. +|.|++.++....-|
T Consensus 169 ~~----~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p~I 204 (885)
T COG5218 169 RI----VNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYPCI 204 (885)
T ss_pred HH----HHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcchhH
Confidence 11 135666676 3445554 467777665444333
No 318
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=62.76 E-value=58 Score=31.17 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=66.8
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHH--Hhc-cChh
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLL--EFC-IDEA 272 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~--~Ls-~~~~ 272 (859)
..+.|.++|+++.. ..+|.+++++|+.|..=+..|......+ .+.-. -...+..... ..+. ..+ ..++
T Consensus 11 LL~~L~~iLk~e~s---~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~---~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQS---QSIRREALRVLGILGALDPYKHKSIQKS-LDSKS--SENSNDESTD---ISLPMMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHhhhccccCcHHHhccccc-CCccc--cccccccchh---hHHhhccCCCchHH
Confidence 34567788877632 2999999999999855444433322211 00000 0000011111 1111 121 1223
Q ss_pred hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC--CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHH
Q 002999 273 YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI--EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVG 349 (859)
Q Consensus 273 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~ 349 (859)
... ..++..|+++|++..-..-...+..++.++... ......+- -.+|.++..+++.++..++..-.-|+
T Consensus 82 ~y~-----~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 82 YYP-----TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHH-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 332 336788888888222222233455665555532 22222222 37888888887666655544443333
No 319
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=62.43 E-value=24 Score=30.29 Aligned_cols=69 Identities=13% Similarity=-0.013 Sum_probs=53.5
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC
Q 002999 242 TKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI 313 (859)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~ 313 (859)
....+..|.++.+.+|.+++..|..|..... ..+....+.+..+...|+ .+|+-+--+|...|..|+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~-d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK-DEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHH
Confidence 4456667788888899999999999988766 222233667788888888 78888889999999999854
No 320
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=62.42 E-value=92 Score=29.81 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=77.2
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHH
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEH 360 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~ 360 (859)
+..++.|.++|+.+.+..++..++++|..|..-|..+.+..+.+.=..- -........ -..+.+......+.+.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~---~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDEST---DISLPMMGISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccch---hhHHhhccCCCchHHH
Confidence 4467888899985567899999999999997766655443222111000 000000000 0111111222223333
Q ss_pred HHHhhHHHHHHHhCCh---hHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002999 361 IARQCAKVLVELLSKP---AGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVV 434 (859)
Q Consensus 361 i~~~gi~~Lv~lL~~~---~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~ 434 (859)
...-.+..|+++|+++ .-...++.++.++-.....+-.-.=.-++|.++..++. .+...++.-..-|..|.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~---~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT---CPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 3334567888888832 23345666766665332211111113578899999975 33477777666666553
No 321
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=62.32 E-value=28 Score=33.60 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=65.9
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhh--HHHHHHHhC---ChhHHHHHHHHHHHhhCCCcch----
Q 002999 326 FEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQC--AKVLVELLS---KPAGRAASLKALYNLSGLDDNA---- 396 (859)
Q Consensus 326 i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~g--i~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~---- 396 (859)
+..+..+|++.+...+..++..+...+...+...+..+++ +..|+.+|+ ++.+++.++.+|..|-..-...
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 4456778888888888877777766665544433334444 478888888 6677888888888886543222
Q ss_pred HHHHH---cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 002999 397 TILVD---SALLPALTDILFKSHDASPELKELAAATIANVVSNP 437 (859)
Q Consensus 397 ~~i~~---~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~ 437 (859)
+.+.- .+.++.++.++.. ....+.++.+|..+-...
T Consensus 107 Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 107 REIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLPHH 145 (165)
T ss_pred HHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHC
Confidence 22221 1445555555531 345667777777665533
No 322
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=62.27 E-value=4.4 Score=30.81 Aligned_cols=38 Identities=16% Similarity=0.485 Sum_probs=23.8
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccC-CCCCCCCCCCc
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLED-GRDPTCPVTGQ 124 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~-~~~~~cP~t~~ 124 (859)
+.|.||.|++ .|+...+.+|+...+.. ++...||+|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 3589999876 24555566665553322 23578999964
No 323
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=61.71 E-value=1.9e+02 Score=38.11 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=31.2
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcC----hHHHHh------cCChHHHHHHh
Q 002999 283 ALVLLSSMTGNLELPALSNLADEVFKKMERIEEI----VQPLAA------AGRFEPLINRL 333 (859)
Q Consensus 283 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~----~~~i~~------~G~i~~Lv~lL 333 (859)
++..|..++. .++......+.+|.||..+++. |..+.+ ...+|.+|++|
T Consensus 228 v~~~L~~ll~--~~~~L~~~iLd~Ls~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lirFL 286 (1426)
T PF14631_consen 228 VVEELLELLQ--ENPELTVPILDALSNLNLSPELLEEVREKVLEKLSSVDLEDLPVLIRFL 286 (1426)
T ss_dssp HHHHHHHHHH--H-STTHHHHHHHHHHS---HHHHHHHHHHHHHSTTSS-TTHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHhcCChhhhHHHHHHH
Confidence 5677777776 2455677788999999877654 333332 35688899877
No 324
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=61.66 E-value=62 Score=28.12 Aligned_cols=67 Identities=15% Similarity=0.042 Sum_probs=48.7
Q ss_pred HhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHH
Q 002999 276 SVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIE 343 (859)
Q Consensus 276 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 343 (859)
.+....+.+..|+...+ .+++...+.++..|..|..++.....+.+-|++..|-++-..-++..+..
T Consensus 24 dl~~~~~Ll~~LleWFn-f~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~ 90 (98)
T PF14726_consen 24 DLVKERLLLKQLLEWFN-FPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAE 90 (98)
T ss_pred HHccHHHHHHHHHHHhC-CCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHH
Confidence 34344556666777666 56666888999999999999999999999999998666554444444433
No 325
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=61.43 E-value=4.2 Score=30.71 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=31.3
Q ss_pred cCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC
Q 002999 78 LCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL 129 (859)
Q Consensus 78 ~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~ 129 (859)
.|=.+...=...++++|||..++.| |-.+ ...-||+|+.+++..
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~I~~~~---f~~~-----rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHLICDNC---FPGE-----RYNGCPFCGTPFEFD 52 (55)
T ss_pred eEEEccccccccccccccceeeccc---cChh-----hccCCCCCCCcccCC
Confidence 3445555556688999999999998 4332 145799999887643
No 326
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=61.35 E-value=1.4e+02 Score=35.74 Aligned_cols=178 Identities=17% Similarity=0.118 Sum_probs=92.5
Q ss_pred HHHHHHhCC-hhHHHHHHHHHHHhhCCC--cchHHHHHcCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCCcccc
Q 002999 367 KVLVELLSK-PAGRAASLKALYNLSGLD--DNATILVDSALLPALTDILFKS-HDASPELKELAAATIANVVSNPGCWEL 442 (859)
Q Consensus 367 ~~Lv~lL~~-~~~~~~a~~aL~~Ls~~~--~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~~~~a~~~L~nL~~~~~~~~~ 442 (859)
..+.+++.+ ..--..|...|..|.... +..+ .+..+..++... ......++..|+-++..|....-....
T Consensus 398 ~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~ 471 (618)
T PF01347_consen 398 KFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSD 471 (618)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccc
Confidence 444555552 222334556666665443 2222 234555555431 112346777777777766432111100
Q ss_pred -cccccccCcccccchHHHHHHhhc----CCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCC---C
Q 002999 443 -ASADKLGHSMQSESIVSSLLGLLS----GVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHP---E 514 (859)
Q Consensus 443 -~~~~~~~~~l~~~~~i~~Ll~LL~----~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~ 514 (859)
............+..++.|...+. .++.+-+..++.+|.|+... ..++.|..++... +
T Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--------------~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 472 SAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--------------ESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp ---------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--------------GGHHHHHTTSTTSS-S-
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--------------hhhHHHHhHhhhccccc
Confidence 000000012233455666666654 44557777889999998532 1467777777766 5
Q ss_pred hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHh
Q 002999 515 VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANI 573 (859)
Q Consensus 515 ~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L 573 (859)
..+|..|+++|..++...++ ...+.|..++.+.....++|.+|..+|-..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~---------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPE---------KVREILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HH---------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhcCcH---------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 68899999999988633332 244667777777665457888887666654
No 327
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.29 E-value=6.5 Score=42.08 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=44.9
Q ss_pred cCcccccccCC------CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc--CC---CCCcchhhhHhHHHHH
Q 002999 78 LCPLTKQVMKE------PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL--KS---LELKPNIGLAGAIEEW 144 (859)
Q Consensus 78 ~cpi~~~~m~d------Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l--~~---~~l~pn~~l~~~I~~w 144 (859)
.|=||.+-+.. |-++.||||+|-.|+...+.. + ...||++|++. .. ..+..|.++-..|+..
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~----~-~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN----S-RILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcC----c-eeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 35555555543 667789999999999988876 3 56789999883 22 3567777777777665
No 328
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.08 E-value=47 Score=38.69 Aligned_cols=120 Identities=12% Similarity=0.183 Sum_probs=85.2
Q ss_pred chHHHhhhccCChhHHHHHHHHHHhhhhcc---CcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcc
Q 002999 728 IKPLVDLLAEEDTNVEIAAVEALSTLIIDT---SKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVE 804 (859)
Q Consensus 728 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~---~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~ 804 (859)
...++.||+++.--.+...+++.+|++.+- +...+...+.+. .-|..+.+-++ ..++-.|-+|...+.++|...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~--~Lv~ll~ERl~-D~~py~RtKalqv~~kifdl~ 377 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLN--DLVGLLVERLS-DTYPYTRTKALQVLEKIFDLN 377 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHH--HHHHHHHHHhh-ccchHHHHHHHHHHHHHHhCc
Confidence 567899999999999999999999998651 111111111121 23444555565 378999999999999999533
Q ss_pred ccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCcCcc
Q 002999 805 GHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLKQISGLSGKA 852 (859)
Q Consensus 805 ~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 852 (859)
....+....++.-.+.-+++.+..+|+.|.+.+..|-..+-+++.-
T Consensus 378 --sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h 423 (1128)
T COG5098 378 --SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEH 423 (1128)
T ss_pred --ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence 2223334445567778899999999999999999998877766544
No 329
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=60.53 E-value=1e+02 Score=28.34 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhc
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLI 250 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~ 250 (859)
..-.|.+....++..-. .++..|.+-|+++++ .++..|+..|-.+..+ +.....+.....+..|++++.
T Consensus 20 ~il~icd~I~~~~~~~k-----~a~raL~krl~~~n~----~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~ 90 (133)
T cd03561 20 LNLELCDLINLKPNGPK-----EAARAIRKKIKYGNP----HVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAK 90 (133)
T ss_pred HHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhC
Confidence 44455555554432221 244567888888888 9999999999999988 446777777777888999997
Q ss_pred C---CCHHHHHHHHHHHHHhccC
Q 002999 251 G---NSEKEKEYAVKLLLEFCID 270 (859)
Q Consensus 251 ~---~~~~~~~~A~~~L~~Ls~~ 270 (859)
. .+..++..+..++...+..
T Consensus 91 ~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 91 NSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 3678888998888877653
No 330
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=60.45 E-value=7.6 Score=40.47 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=31.5
Q ss_pred CcccccccC--CCeec--CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC
Q 002999 79 CPLTKQVMK--EPVVL--ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL 129 (859)
Q Consensus 79 cpi~~~~m~--dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~ 129 (859)
||+|.+.|. |--.. +||+..||.|-.---+. -+..||-||....++
T Consensus 17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-----lngrcpacrr~y~de 66 (480)
T COG5175 17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-----LNGRCPACRRKYDDE 66 (480)
T ss_pred CcccccccccccCCcccCCcccHHHHHHHHHHHhh-----ccCCChHhhhhcccc
Confidence 999999997 43333 68988888875422222 146999998766554
No 331
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=60.37 E-value=7.3 Score=40.14 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=34.0
Q ss_pred Cccccc-ccCCCe----ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 79 CPLTKQ-VMKEPV----VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 79 cpi~~~-~m~dPv----~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
||.|+. ....|- +-+|||+.|.+|.-.-|.. | ...||.|+..|..
T Consensus 3 Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~----g-~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 3 CPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL----G-PAQCPECMVILRK 52 (300)
T ss_pred CcccccceecCccceeeeccccchHHHHHHHHHHhc----C-CCCCCcccchhhh
Confidence 787764 233442 1289999999999999998 4 6899999877654
No 332
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=58.99 E-value=30 Score=32.01 Aligned_cols=73 Identities=8% Similarity=0.053 Sum_probs=56.2
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhc
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQ 574 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 574 (859)
++..|-.-|+++++.++..|+.+|-.+....+...+..+...+++..|+.++......+.++..+..++..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 3556667788999999999999999998777788888888878999999999887763236665555555443
No 333
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=58.14 E-value=32 Score=32.32 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=58.1
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhc
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQ 574 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 574 (859)
++..|..-|.++++.++..|+.+|-.+....+...+..+...+++..|++++..... ..++.-.+.++...+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~-~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVH-PTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHH
Confidence 355666677889999999999999999988888888888888999999999988533 477777777666654
No 334
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.12 E-value=4.6e+02 Score=32.68 Aligned_cols=361 Identities=16% Similarity=0.115 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhccc---CcchHHHHHhhCchHHHHHH
Q 002999 172 KALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAK---DEESKKIMLEEGVTKSVIHS 248 (859)
Q Consensus 172 ~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~---~~~~r~~i~~~g~i~~Lv~l 248 (859)
+-+..+..+-..+++|-...-+.--+|.++.-+..... .+|...+..|-.-.. .-..++ +-.|.-+
T Consensus 486 eVlnrmfkIftshpeNYricqelytvpllvlnmegfPs----slqvkiLkilEyAVtvvncvPeqE-------LlSLCvL 554 (2799)
T KOG1788|consen 486 EVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS----SLQVKILKILEYAVTVVNCVPEQE-------LLSLCVL 554 (2799)
T ss_pred HHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh----HHHHHHHHHHHHHHhhhccCcHHH-------HHHHHHH
Confidence 45677777777788887777777888888888776544 667666665533211 001111 1123334
Q ss_pred hcCCCH-HHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcC--------------------CCC-----------
Q 002999 249 LIGNSE-KEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGN--------------------LEL----------- 296 (859)
Q Consensus 249 L~~~~~-~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~--------------------~~~----------- 296 (859)
|+.+-. ..+...+.....|..-+..-++..++-|.++.|-..++. ..+
T Consensus 555 LqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~ld~~d 634 (2799)
T KOG1788|consen 555 LQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQHLDSQD 634 (2799)
T ss_pred hcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhcccccc
Confidence 443321 222233333344433333333333456777666655541 000
Q ss_pred ---------------hHHHH------HHHHHHHHhc-CCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 002999 297 ---------------PALSN------LADEVFKKME-RIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT 354 (859)
Q Consensus 297 ---------------~~~~~------~a~~aL~nL~-~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~ 354 (859)
..+.+ ....+|-.|- .+.+|...+.++.++..++.++ -+++.+....+.+.-|...
T Consensus 635 aiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivscLitv 712 (2799)
T KOG1788|consen 635 AIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITV 712 (2799)
T ss_pred ceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhcc
Confidence 00000 0122334444 3467777788888877777776 2444454455554444433
Q ss_pred CccHHHHHHhhHHHHHHHhC--------------ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhc-----
Q 002999 355 NSCKEHIARQCAKVLVELLS--------------KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFK----- 414 (859)
Q Consensus 355 ~~~~~~i~~~gi~~Lv~lL~--------------~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~----- 414 (859)
+..+ +.++-+-.||..|+ ..+......+++|.+-..+ ..+..+.++|+...|...|..
T Consensus 713 dpkq--vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgft 790 (2799)
T KOG1788|consen 713 DPKQ--VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFT 790 (2799)
T ss_pred Cccc--ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccch
Confidence 3221 11112233444443 2345667788999987655 667888899999988887754
Q ss_pred --cCCCCHHHHHHHHHHHHH-----hhcCCCcccccccccccCcccccc-------------------hHHHHHHhh-cC
Q 002999 415 --SHDASPELKELAAATIAN-----VVSNPGCWELASADKLGHSMQSES-------------------IVSSLLGLL-SG 467 (859)
Q Consensus 415 --~~~~~~~~~~~a~~~L~n-----L~~~~~~~~~~~~~~~~~~l~~~~-------------------~i~~Ll~LL-~~ 467 (859)
+...+..+--+-..+|.. +|.++.++..+ +..+... .|..|+.+- ..
T Consensus 791 elhdesDlcvyiklfkilFrlfTlavcenasNrmkl------htvITsqtftsLLresgllcvnler~viqlllElalev 864 (2799)
T KOG1788|consen 791 ELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKL------HTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEV 864 (2799)
T ss_pred hcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhhe------eeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHh
Confidence 111222222222233322 23333333321 1111112 222222211 00
Q ss_pred C-ChHHH-H-HHHHHHHHhccC------Chh-HHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHH
Q 002999 468 V-SPQCQ-V-STLRILCGIASS------PQA-AESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLA 537 (859)
Q Consensus 468 ~-~~~~~-~-~a~~aL~~La~~------~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~ 537 (859)
- .|.+. + .|+..+..+-.+ |.. .....+.|..+|++..|++.+-...++.+..-++++..+++ .++..+
T Consensus 865 lvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaR-aspfna 943 (2799)
T KOG1788|consen 865 LVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLAR-ASPFNA 943 (2799)
T ss_pred hCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhh-cCCCch
Confidence 0 11111 1 122222222111 100 01224667889999999999888889999988999998884 445566
Q ss_pred HhcCCCCchHHHHHhhc
Q 002999 538 YALKPFDKLVLFKDKIL 554 (859)
Q Consensus 538 ~~l~~~g~i~~Lv~lL~ 554 (859)
+.+...|.++.|+.++.
T Consensus 944 elltS~gcvellleIiy 960 (2799)
T KOG1788|consen 944 ELLTSAGCVELLLEIIY 960 (2799)
T ss_pred hhhhcccHHHHHHHHhh
Confidence 66777788888877664
No 335
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=57.95 E-value=31 Score=32.28 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=56.7
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhc
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQ 574 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 574 (859)
++..|..-|.++++.++..|+.+|-.+....+...+..+...+.+..|++++..... ..++..++.++..-+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~-~~Vk~kil~li~~W~ 113 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKN-EEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCC-HHHHHHHHHHHHHHH
Confidence 456677778889999999999999999876677788888888999999999986433 467766666666544
No 336
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=57.09 E-value=27 Score=32.68 Aligned_cols=29 Identities=17% Similarity=0.075 Sum_probs=19.9
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhcC
Q 002999 283 ALVLLSSMTGNLELPALSNLADEVFKKMER 312 (859)
Q Consensus 283 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~ 312 (859)
-|.+||.+|. ++|..+...|+.+|.+-..
T Consensus 95 NV~~LI~~L~-~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLK-SDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG---G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHc-CCcHHHHHHHHHHHHhhHH
Confidence 4888999998 7788888888888888753
No 337
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=56.55 E-value=2.7e+02 Score=29.61 Aligned_cols=196 Identities=14% Similarity=0.099 Sum_probs=131.9
Q ss_pred HHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchH----HHHHh-hCchHHHHHHhcCC-CHHHHHHHHH
Q 002999 190 RVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESK----KIMLE-EGVTKSVIHSLIGN-SEKEKEYAVK 262 (859)
Q Consensus 190 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r----~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~ 262 (859)
.+.++|..+.|+..+...+- +.+..++.+..++-.- -..| +.+.. ...+..|++- .. .++..-.+-.
T Consensus 74 ef~~~~~l~~lI~~l~~l~f----E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~ 147 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEF----ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGN 147 (342)
T ss_pred HHHhCCchHHHHHhhhcccc----hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHH
Confidence 46778999999999988777 7888888877776543 1111 12211 1223333322 12 2455555556
Q ss_pred HHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcCC----hHHHHHHhccCC
Q 002999 263 LLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER-IEEIVQPLAAAGR----FEPLINRLCQGS 337 (859)
Q Consensus 263 ~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~----i~~Lv~lL~~~~ 337 (859)
.|.+....+...+-|. .+.-.......++ .++-++...|..+...|.. +......+...+. .+.-=.+|.+++
T Consensus 148 mlrEcirhe~LakiiL-~s~~~~~FF~~vq-~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N 225 (342)
T KOG1566|consen 148 MLRECIRHEFLAKIIL-ESTNFEKFFLYVQ-LPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN 225 (342)
T ss_pred HHHHHHhhHHHHHHHH-cchhHHHHHHHHh-ccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc
Confidence 6777777766666554 3556777777777 6666888888888888864 3333444444433 222445778999
Q ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHh-----hHHHHHHHhC--ChhHHHHHHHHHHHhhCCC
Q 002999 338 DNVQIEMAFLVGKLTLTNSCKEHIARQ-----CAKVLVELLS--KPAGRAASLKALYNLSGLD 393 (859)
Q Consensus 338 ~~~~~~aa~~L~~la~~~~~~~~i~~~-----gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~ 393 (859)
--.+.++...|+.+-.+..|...+... ....++.+|+ +..+|-.|-.+.+-...++
T Consensus 226 yvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 226 YVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred eehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999999999999998887776543 4577888998 8889999998888887765
No 338
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=56.31 E-value=33 Score=32.26 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=58.6
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhcC-CCHHHHHHHHHHHHHhccC
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLIG-NSEKEKEYAVKLLLEFCID 270 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~ 270 (859)
++..|.+-|.+.++ .++..|+..|-.+..+ ......|.....+..|++++.. .+..++..++.++...+..
T Consensus 38 a~ral~KRl~~~n~----~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDP----NVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 34567777777887 9999999999999888 5567788888999999999987 6788999999888887643
No 339
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=54.90 E-value=33 Score=33.54 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=17.9
Q ss_pred hhhhhhCCCCCChhHHHHHHHHHhhh
Q 002999 2 DLARALGIESDNHNELTEQIKQLKSD 27 (859)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (859)
+||..+|+. ..++++-+..+..+
T Consensus 41 eLA~~Lgi~---~~~VRk~L~~L~e~ 63 (178)
T PRK06266 41 EIAEQTGIK---LNTVRKILYKLYDA 63 (178)
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHC
Confidence 588999988 57788888877654
No 340
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=54.77 E-value=2.1e+02 Score=32.48 Aligned_cols=228 Identities=13% Similarity=0.126 Sum_probs=125.3
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhc-----------CCCcChHHHHhcCChHHHHHHhc----cCChHHHHHHH
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKME-----------RIEEIVQPLAAAGRFEPLINRLC----QGSDNVQIEMA 345 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~-----------~~~~~~~~i~~~G~i~~Lv~lL~----~~~~~~~~~aa 345 (859)
+.+|..|.++++.++.-.++.++++.|..|- +.+.+-..+-|...|...+.++- .|++.+.-...
T Consensus 96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 3477888888887888889999999998872 11333344556667777777773 34443333332
Q ss_pred HH-HHHhcCCCccHHHH-HH-hh-HHHHHHHhC-ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCH
Q 002999 346 FL-VGKLTLTNSCKEHI-AR-QC-AKVLVELLS-KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASP 420 (859)
Q Consensus 346 ~~-L~~la~~~~~~~~i-~~-~g-i~~Lv~lL~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~ 420 (859)
.+ +.-++.-.+....- .+ .. ..+|+++ . ..+++..|+..-..=+.+..+...++..-+.|+|+.-|..
T Consensus 176 kvvl~~ia~vgeS~qyPPVNWaalLsPLMRl-nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~------ 248 (589)
T PF11229_consen 176 KVVLKPIATVGESYQYPPVNWAALLSPLMRL-NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSV------ 248 (589)
T ss_pred HHHHHHhhhcCCCCCCCCccHHHHhhHHHhc-cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhH------
Confidence 22 33333211111000 00 11 2445544 3 7888888886665556666788889999999999988843
Q ss_pred HHHHHHHHHHHHhhcCCCcccccccccccCcccccchHH-HHHHhhcC----CChHHHHHHHHHHHHhccCChhHHHHHH
Q 002999 421 ELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVS-SLLGLLSG----VSPQCQVSTLRILCGIASSPQAAESVAT 495 (859)
Q Consensus 421 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~-~Ll~LL~~----~~~~~~~~a~~aL~~La~~~~~~~~~~~ 495 (859)
..+.+-..-+.....+-.+.. + ..+++ .++..++. .++++...++.-|..-...+.....+..
T Consensus 249 ~tk~~L~~Sl~~wmkhVsedq----------i--Q~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws 316 (589)
T PF11229_consen 249 NTKKYLFESLSLWMKHVSEDQ----------I--QAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWS 316 (589)
T ss_pred HHHHHHHHHHHHHHhhCCHHH----------H--HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHH
Confidence 445555554544444433222 1 22333 23333332 3456666666666554444443333333
Q ss_pred HHhhCCCHHHHHHhhcCC----ChhHHHHHHHHHHHHh
Q 002999 496 HIKSGDGIKYIIQFLEHP----EVEHRTYAFRLTRILS 529 (859)
Q Consensus 496 ~i~~~g~i~~Lv~lL~~~----~~~v~~~A~~~L~~Ls 529 (859)
.+. .....+.+++-++ +-+.-...+++|..++
T Consensus 317 ~Lc--~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMt 352 (589)
T PF11229_consen 317 LLC--ETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMT 352 (589)
T ss_pred HHH--HHHHHHHHhCcccccHHHHHHHHHHHHHHhhcC
Confidence 332 4567777777333 2233344566666664
No 341
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=54.00 E-value=46 Score=30.72 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=55.9
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC-CCchhHHHHHHHHHHHhc
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN-QSANCERSDAACILANIQ 574 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~~~A~~~L~~L~ 574 (859)
++..|-.-|+++++.++..|+.+|-.+....+...+..+....++..|++++... .....++.-+..++.+.+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 4566777788999999999999999998777777878888778888899999874 222367666666666544
No 342
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=53.47 E-value=32 Score=32.05 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=56.3
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchh--HHHHHHHHHHHh
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANC--ERSDAACILANI 573 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~--~~~~A~~~L~~L 573 (859)
++..|..-|.++++.++..|+.+|-.+....+...+..+....++..|++++.+...... |+..+...|...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 356667778899999999999999999877778888899888899999999988776222 565555555543
No 343
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.41 E-value=56 Score=34.49 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=83.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCC-cHHHH
Q 002999 503 IKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLS-EEEVK 581 (859)
Q Consensus 503 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~-~~~~~ 581 (859)
+...+..|.+.+-+.+..++..+..|+..+.+.....+. ..|-.+++-+++..+ .+-.+|+.+++.+... +..+.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslKNlRS--~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLKNLRS--AVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888999999998766666555555 477788888888877 7777888888887652 22222
Q ss_pred HHHHhccHHHHHHH-HhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHH
Q 002999 582 TLLEATFIKWIVIT-LQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQ 660 (859)
Q Consensus 582 ~l~~~g~v~~L~~l-L~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~ 660 (859)
. .+..++.. |..... ....+.+.+-.+|...+..-.| .-+++.|.-.+++. ++.++.
T Consensus 166 ~-----~ld~lv~~Ll~ka~~--------dnrFvreda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~-n~r~r~ 223 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQ--------DNRFVREDAEKALVAMVNHVTP--------QKLLRKLIPILQHS-NPRVRA 223 (334)
T ss_pred H-----HHHHHHHHHHhhhcc--------cchHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhh-chhhhh
Confidence 2 22233333 332111 1112344555555544432111 12345566667775 888888
Q ss_pred HHHHHh
Q 002999 661 LAAHGL 666 (859)
Q Consensus 661 ~Aa~aL 666 (859)
.++...
T Consensus 224 ~a~~~~ 229 (334)
T KOG2933|consen 224 KAALCF 229 (334)
T ss_pred hhhccc
Confidence 777543
No 344
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=53.21 E-value=12 Score=27.51 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=19.6
Q ss_pred CcccccccC--CCeec--CCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 79 CPLTKQVMK--EPVVL--ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 79 cpi~~~~m~--dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
||++.+.|. |--.. +||+-++|.+-.+-... + ...||-+|++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~----~-~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN----E-GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS----S--SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc----c-CCCCCCCCCCC
Confidence 788888772 22233 67999999997766653 2 56999998875
No 345
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=51.60 E-value=3.7e+02 Score=29.70 Aligned_cols=150 Identities=11% Similarity=0.048 Sum_probs=87.4
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc---C------CCChHHHHHHHHHHHHhcC
Q 002999 243 KSVIHSLIGNS-EKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG---N------LELPALSNLADEVFKKMER 312 (859)
Q Consensus 243 ~~Lv~lL~~~~-~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~------~~~~~~~~~a~~aL~nL~~ 312 (859)
..++.+|..+. ..-+...+.+++-||.+...-+-+.. ......|..+.. + ..|..+...+..+|+|+..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~-~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTN-DQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccc-hHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 35666666665 34455677788888877543333321 112233333322 1 2345677889999999986
Q ss_pred C-CcChHHHHhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhcC-CCccHHHH-H-HhhHHHHHHHhC-----Ch--
Q 002999 313 I-EEIVQPLAAAGRFEPLINRLCQ-----GSDNVQIEMAFLVGKLTL-TNSCKEHI-A-RQCAKVLVELLS-----KP-- 376 (859)
Q Consensus 313 ~-~~~~~~i~~~G~i~~Lv~lL~~-----~~~~~~~~aa~~L~~la~-~~~~~~~i-~-~~gi~~Lv~lL~-----~~-- 376 (859)
+ ...+....+......+.+.+.. -..+++..-.+.|.-+.. ..+.|..+ . -.|.+.+.+.|. +.
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 5 4556677788777778777632 233445555555554433 22334333 3 356788888876 11
Q ss_pred ----------hHHHHHHHHHHHhhCCC
Q 002999 377 ----------AGRAASLKALYNLSGLD 393 (859)
Q Consensus 377 ----------~~~~~a~~aL~~Ls~~~ 393 (859)
.....+++++.|+..+.
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 23445788888888765
No 346
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=51.08 E-value=4.3e+02 Score=30.26 Aligned_cols=246 Identities=10% Similarity=0.034 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHH
Q 002999 253 SEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINR 332 (859)
Q Consensus 253 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~l 332 (859)
..+.|..+...|..+...........+ ..+.+.+.....++....-+.+|..|+.+..+. ...+.+..|.|...
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~w 115 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGLMR-----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLSW 115 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHHH
Confidence 356788888888887766543211111 122233342344444456677888888765555 34677888888888
Q ss_pred hccCChHHHHHHHHHHHHhcC---CCcc--HHHH--HHh----hHHHHHHHhC------ChhHHHHHHHHHHHhhCCCcc
Q 002999 333 LCQGSDNVQIEMAFLVGKLTL---TNSC--KEHI--ARQ----CAKVLVELLS------KPAGRAASLKALYNLSGLDDN 395 (859)
Q Consensus 333 L~~~~~~~~~~aa~~L~~la~---~~~~--~~~i--~~~----gi~~Lv~lL~------~~~~~~~a~~aL~~Ls~~~~~ 395 (859)
|.... .++..-...+. .... ...+ ... -+..++++++ ++......+..+..+|....+
T Consensus 116 l~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~ 190 (464)
T PF11864_consen 116 LEPSY-----QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS 190 (464)
T ss_pred HHHHH-----HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence 74322 11111111111 0111 1111 111 1244455555 333444444445555443322
Q ss_pred h----------HHHHHcCc-----HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHH
Q 002999 396 A----------TILVDSAL-----LPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSS 460 (859)
Q Consensus 396 ~----------~~i~~~G~-----i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~ 460 (859)
. ..++..|. ++.++..|-+.. ........+..++.||+....+ ..++..
T Consensus 191 ~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~-~~~~l~~~~w~~m~nL~~S~~g---------------~~~i~~ 254 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIV-NSVSLCKPSWRTMRNLLKSHLG---------------HSAIRT 254 (464)
T ss_pred HHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHh-cccccchhHHHHHHHHHcCccH---------------HHHHHH
Confidence 1 12233333 334555554421 2236677788888888875433 234677
Q ss_pred HHHhhcCC------ChHHHHHHHHHHHHhccCC--hhHHHHHHHHhhCC--CHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 461 LLGLLSGV------SPQCQVSTLRILCGIASSP--QAAESVATHIKSGD--GIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 461 Ll~LL~~~------~~~~~~~a~~aL~~La~~~--~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
|..+|.+. +..+.+.|+..|..+..+. ... ..+.-.- .++.|...++.+++.+-...+.++..+-
T Consensus 255 L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~----~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 255 LCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGY----PSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCc----ceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 88877332 2244455666665554433 110 0111111 4566666666666655555555555553
No 347
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=50.74 E-value=1.9e+02 Score=26.97 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=57.1
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhc-CCCHHHHHHHHHHHHHhcc
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLI-GNSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~ 269 (859)
++..|.+-|+++++ .++..|+..|-.+..+ ......+...+.+..|++++. ..+..++..++.++..-+.
T Consensus 42 a~ral~krl~~~n~----~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNP----NVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCCh----HHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45667788888888 9999999999999887 556778888899999999987 4567888888888887764
No 348
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=50.55 E-value=42 Score=31.31 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=56.2
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhcC------CCHHHHHHHHHHHHHh
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLIG------NSEKEKEYAVKLLLEF 267 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~~L 267 (859)
++..|.+-|+++++ .++..|+..|-.+..+ ......|...+.+..|++++.. .+..++...+.++..-
T Consensus 39 a~rai~krl~~~n~----~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 39 AVRLLAHKIQSPQE----KEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 45567778888888 8999999999999887 6677888888999999999963 3578888888887766
Q ss_pred cc
Q 002999 268 CI 269 (859)
Q Consensus 268 s~ 269 (859)
+.
T Consensus 115 ~~ 116 (139)
T cd03567 115 TL 116 (139)
T ss_pred HH
Confidence 53
No 349
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=50.48 E-value=2e+02 Score=34.12 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHh
Q 002999 375 KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILF 413 (859)
Q Consensus 375 ~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~ 413 (859)
++.+....+++..++.....+...++...++|.++-+..
T Consensus 480 dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 480 DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 455555555555555554443333444556666666654
No 350
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=50.32 E-value=6.2 Score=48.81 Aligned_cols=43 Identities=14% Similarity=0.446 Sum_probs=38.2
Q ss_pred CcccCcccccccCC-CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCC
Q 002999 75 KNFLCPLTKQVMKE-PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTG 123 (859)
Q Consensus 75 ~~~~cpi~~~~m~d-Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~ 123 (859)
..|.||||.++|+. --+.-|||.||..|++-|+.. +..||.++
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~------~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA------SSRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH------hccCcchh
Confidence 45789999999995 457899999999999999998 78999986
No 351
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.01 E-value=25 Score=41.17 Aligned_cols=50 Identities=6% Similarity=0.044 Sum_probs=39.5
Q ss_pred CcccCcccccccCCCe----ecC---CCchhcHHHHHHHHHhcccCCCCCCCCCCCc
Q 002999 75 KNFLCPLTKQVMKEPV----VLE---SAQAYERKAIEYWFERCLEDGRDPTCPVTGQ 124 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv----~~~---~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~ 124 (859)
+.-.|++|...+.+|| +.+ |++.+|-.||..|.+.-.+...+..|+||..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 4588999999999976 345 8999999999999987444444677888854
No 352
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=48.02 E-value=4e+02 Score=28.94 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=104.8
Q ss_pred HHHHHhhhhcCCCccchHHHHHHHHHHHHh-cCCcc-hhHHHhcCc-HHHHHHHHhcCCCCc--c-------hHHHHHHH
Q 002999 153 VSTVVETLRKENPEVDGLDKALDIVFKISE-EHPSN-RYRVRNAGV-VLLIVKLLKSSSKSV--G-------TILRSKAL 220 (859)
Q Consensus 153 i~~l~~~L~~~~~~~~~~~~al~~L~~l~~-~~~~~-r~~i~~~g~-i~~Lv~lL~~~~~~~--~-------~~~~~~al 220 (859)
...+...|.+... .....+|+-|..++. .+... ++.+..-+. .+.+.+++....... + ..+|...+
T Consensus 58 ~k~lyr~L~~~~~--~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSSSKP--SLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhCcCcH--HHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 4555566665442 334468888888887 55443 333433333 345666663321100 0 17888888
Q ss_pred HHHHhcccC--cchHHHHH-hhCchHHHHHHhcCCCHHHHHHHHHHHHH-hccCh----hhhhHhhhhhChHHHHHHhhc
Q 002999 221 MALLSMAKD--EESKKIML-EEGVTKSVIHSLIGNSEKEKEYAVKLLLE-FCIDE----AYCKSVASEKGALVLLSSMTG 292 (859)
Q Consensus 221 ~~L~~L~~~--~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~-Ls~~~----~~~~~i~~~~g~i~~Lv~lL~ 292 (859)
..+..+... +..+..+. ..+.+..+.+-|..++.++....+.+|.. +..++ ..+..+.. ...+..|+.+-.
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLYS 214 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHhc
Confidence 877777665 55565555 46678999999999999999999999985 44443 34555553 558899999776
Q ss_pred CCCCh----HHHHHHHHHHHHhcCCCcC
Q 002999 293 NLELP----ALSNLADEVFKKMERIEEI 316 (859)
Q Consensus 293 ~~~~~----~~~~~a~~aL~nL~~~~~~ 316 (859)
..++ .+.+.+-..|..+|.++.+
T Consensus 215 -~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 215 -RDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred -ccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 4555 7888888899999877654
No 353
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=47.92 E-value=61 Score=30.22 Aligned_cols=71 Identities=8% Similarity=0.156 Sum_probs=53.3
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC----CCchhHHHHHHHHHHH
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN----QSANCERSDAACILAN 572 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~----~~~~~~~~~A~~~L~~ 572 (859)
++..|..-++++++.++..|+.+|-.+....+...+..+...+++..|++++... .....++.-.+.++..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 4566777788999999999999999998777788888888878999999999641 1113565555544443
No 354
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=47.76 E-value=17 Score=38.66 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=41.7
Q ss_pred CCCcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHH
Q 002999 73 PFKNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEW 144 (859)
Q Consensus 73 ~~~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w 144 (859)
.++=|.||+|.+-|.-|+.= +.||..|-+|=. .. ...||+|+.++.+ +-+.++.+.++.-
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~------~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KV------SNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh---hh------cccCCcccccccc---HHHHHHHHHHHhc
Confidence 33448899999999999854 679999988832 11 5789999988752 2344444444443
No 355
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=47.42 E-value=3.3e+02 Score=30.09 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=83.1
Q ss_pred CCCcchhhhHhH-HHHHHHhcccccHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHh--
Q 002999 129 LELKPNIGLAGA-IEEWVNRNVEVQVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLK-- 205 (859)
Q Consensus 129 ~~l~pn~~l~~~-I~~w~~~~~~~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~-- 205 (859)
.-+.||..+++. ++-|... +.+-+...+..++. ..+-..|..-|+.+++..+..-..+. ...+-.+|.
T Consensus 191 ~VI~Pnl~~~e~D~ElfEdd----P~EYIrrd~e~sd~-~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y 261 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDD----PEEYIRRDLEGSDS-DTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQY 261 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHS----HHHHHHHHSCSS----SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HhccCccCCCHHHHHHHccC----HHHHHHhhcccccc-CCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHH
Confidence 455677777555 5555443 24444445543222 23333567778888864221111111 112223333
Q ss_pred --cCCCCcchHHHHHHHHHHHhcccCcc-------------hHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 002999 206 --SSSKSVGTILRSKALMALLSMAKDEE-------------SKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID 270 (859)
Q Consensus 206 --~~~~~~~~~~~~~al~~L~~L~~~~~-------------~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~ 270 (859)
+++.+. ..+..|+..+..|+.... +-..+...-.+|.|. -=.+..+-.+..|+..+......
T Consensus 262 ~~~~~~~w--~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~ 338 (370)
T PF08506_consen 262 ASNPSNNW--RSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ 338 (370)
T ss_dssp HH-TTT-H--HHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG
T ss_pred hhCCcccH--HHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh
Confidence 222222 677788888888876521 122333344455444 11133456677777777766543
Q ss_pred hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHH
Q 002999 271 EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVF 307 (859)
Q Consensus 271 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 307 (859)
- .++.+ .+.+|.++..|. +++..+...|+.++
T Consensus 339 l-~~~~l---~~~~~~l~~~L~-~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 339 L-PKEQL---LQIFPLLVNHLQ-SSSYVVHTYAAIAI 370 (370)
T ss_dssp S--HHHH---HHHHHHHHHHTT-SS-HHHHHHHHHHH
T ss_pred C-CHHHH---HHHHHHHHHHhC-CCCcchhhhhhhhC
Confidence 1 12233 458999999999 78888888887664
No 356
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=47.32 E-value=25 Score=33.05 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=35.5
Q ss_pred CcccCcccccccCCCeecCCCc-----hhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQ-----AYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~-----t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
.+-.|=||.+-.. +..-||.. ..=++|+++|+.. +++..||.|+.++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~----s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINT----SKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhc----CCCCcccccCCeEE
Confidence 4467999988753 44457754 3479999999997 44789999988764
No 357
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=46.28 E-value=1.5e+02 Score=34.08 Aligned_cols=115 Identities=15% Similarity=0.229 Sum_probs=69.0
Q ss_pred cchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhc-
Q 002999 455 ESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHP-EVEHRTYAFRLTRILSERI- 532 (859)
Q Consensus 455 ~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~~L~~Ls~~~- 532 (859)
+++|..+++.+.. |.+..-.++.+. +..+.....+.+.+.+.+.++.|+.+|... +.+++.+|+..|+.+....
T Consensus 20 ~~~v~~llkHI~~--~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHIDT--PAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcCC--cHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 5567777776643 334333333333 223334456677788899999999999744 4578888888877775211
Q ss_pred -----------cHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhc
Q 002999 533 -----------GQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQ 574 (859)
Q Consensus 533 -----------~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 574 (859)
+..+...+.....+..|+..+-.+.. ......+++++-.|-
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~-~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG-GSSLVNGVSILIELI 147 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC-cchHHHHHHHHHHHH
Confidence 23455566666777777775543111 134455565555543
No 358
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=45.70 E-value=4.9e+02 Score=33.93 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=91.6
Q ss_pred ChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh--HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCcc-H
Q 002999 282 GALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV--QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSC-K 358 (859)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~--~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~-~ 358 (859)
+.+..++..|. .+...++..|+.+|.++...|... ...++.| .-..+.+.+..|+..|...+++....... -
T Consensus 816 ~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 816 PYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccchhHHHHHHHHHHhhhhhccHHHH
Confidence 46777777887 778899999999999998765432 2333333 34455667788999999988876553321 1
Q ss_pred HHHHHhhHHHHH-HHhC-ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 359 EHIARQCAKVLV-ELLS-KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 359 ~~i~~~gi~~Lv-~lL~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
... ...+. +.+. +..+++.+.+.|+.+|...++-..+. ...+++|+..++....+++-+..++.++=-
T Consensus 891 ~qy----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 891 FQY----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 110 11122 2333 67889999999999998776554443 355666666555554578888888877743
No 359
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.07 E-value=36 Score=40.54 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=34.4
Q ss_pred CcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCc
Q 002999 75 KNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQ 124 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~ 124 (859)
+.-.|..|.-.+.=|++- .|||.|-+.|.+ + + ...||.|+-
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~----~-~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----D----K-EDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----c----C-cccCCccch
Confidence 346799999999999976 999999999988 3 2 679999964
No 360
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=44.62 E-value=29 Score=31.49 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=40.6
Q ss_pred ccCcccccccCCCeec----CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC
Q 002999 77 FLCPLTKQVMKEPVVL----ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL 129 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~----~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~ 129 (859)
..|-||++.-.|+--+ .||...|-.|--..|..+ .-++.||+|+..++..
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~---~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFC---NLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHc---ccCCCCCccccccccc
Confidence 6799999999987643 489999999999988874 3478999998877543
No 361
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=43.96 E-value=1.5e+02 Score=27.59 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhc
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLI 250 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~ 250 (859)
..-.|.+....++..-. .++..|.+-|+++++ .++..|+..|-.+..+ +..+..+.....+..|++++.
T Consensus 25 ~~l~icD~i~~~~~~~k-----ea~~~l~krl~~~~~----~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~ 95 (140)
T PF00790_consen 25 LILEICDLINSSPDGAK-----EAARALRKRLKHGNP----NVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIK 95 (140)
T ss_dssp HHHHHHHHHHTSTTHHH-----HHHHHHHHHHTTSSH----HHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHH-----HHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHc
Confidence 33445555554432221 244567888888888 9999999999999887 566788888889999999887
Q ss_pred CCC-HH---HHHHHHHHHHHhcc
Q 002999 251 GNS-EK---EKEYAVKLLLEFCI 269 (859)
Q Consensus 251 ~~~-~~---~~~~A~~~L~~Ls~ 269 (859)
+.. .. +++.+...|...+.
T Consensus 96 ~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 96 SKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHH
Confidence 543 33 78888887776654
No 362
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=43.20 E-value=30 Score=30.47 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHH
Q 002999 300 SNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQ 341 (859)
Q Consensus 300 ~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~ 341 (859)
.......|..|+..|+--..+++.|+++.|+.+|.+.+.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 345677888899999888999999999999999998876653
No 363
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=42.91 E-value=6.9e+02 Score=30.32 Aligned_cols=188 Identities=15% Similarity=0.108 Sum_probs=104.4
Q ss_pred HHHHhcCCC-cc-HHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHH--HHHHHHhccCCCC
Q 002999 347 LVGKLTLTN-SC-KEHIARQCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDSALLP--ALTDILFKSHDAS 419 (859)
Q Consensus 347 ~L~~la~~~-~~-~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~--~Lv~lL~~~~~~~ 419 (859)
+|+++.... ++ +..+..+|...+...++ +.+.+..+.+.|.|++...+.+......--+. .+-.++... ..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w--~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW--DS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--ch
Confidence 777777654 34 55556677899999888 78899999999999998776543332221122 222233321 22
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhh
Q 002999 420 PELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKS 499 (859)
Q Consensus 420 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~ 499 (859)
.+.-..|+.+|+.+..+++.... ....+.+-..+++. +......... .....
T Consensus 572 ~ersY~~~siLa~ll~~~~~~~~--------~~~r~~~~~~l~e~---------------i~~~~~~~~~--~~~~~--- 623 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEKTTE--------CVFRNSVNELLVEA---------------ISRWLTSEIR--VINDR--- 623 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCcCcc--------ccchHHHHHHHHHH---------------hhccCcccee--ehhhh---
Confidence 36677899999998887654211 11112222222222 2222111110 00011
Q ss_pred CCCHHH-HHHhhc-CCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHH
Q 002999 500 GDGIKY-IIQFLE-HPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAAC 568 (859)
Q Consensus 500 ~g~i~~-Lv~lL~-~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~ 568 (859)
-..+ +.+++. +..+..+..|++++.++... ..+....+.+.++++.+..+-..+. ...++..+..
T Consensus 624 --~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 690 (699)
T KOG3665|consen 624 --SFFPRILRILRLSKSDGSQLWALWTIKNVLEQ-NKEYCKLVRESNGFELIENIRVLSE-VVDVKEEAVL 690 (699)
T ss_pred --hcchhHHHHhcccCCCchHHHHHHHHHHHHHc-ChhhhhhhHhccchhhhhhcchhHH-HHHHHHHHHH
Confidence 1112 333333 34467788999999999843 3446666777788887776654443 2344444433
No 364
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=42.43 E-value=3.9e+02 Score=27.31 Aligned_cols=137 Identities=20% Similarity=0.154 Sum_probs=78.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHhcCCC-cChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHH
Q 002999 284 LVLLSSMTGNLELPALSNLADEVFKKMERIE-EIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIA 362 (859)
Q Consensus 284 i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~ 362 (859)
++.|+.-+....++..+...+.+|..++.++ .+...++ ..|..+...+..+.+.-+.+.+..+-..++. .+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~-----~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVL-----QTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHH-----HHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH--
Confidence 3445553444788899999999999999877 5544433 3455555566555533444444444332221 11
Q ss_pred HhhHHHHHHH-----hC-------ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002999 363 RQCAKVLVEL-----LS-------KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATI 430 (859)
Q Consensus 363 ~~gi~~Lv~l-----L~-------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L 430 (859)
..+..++.. .. ..+.....+.++..++...++. -...++.+..+|. .+.+...+..++..|
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~--~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLN--QSCDEVAQALALEAL 146 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 112223332 11 2233344456778887766552 1234677777783 124567888999999
Q ss_pred HHhhc
Q 002999 431 ANVVS 435 (859)
Q Consensus 431 ~nL~~ 435 (859)
..||.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 99984
No 365
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=41.59 E-value=98 Score=28.56 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=58.3
Q ss_pred CCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchh-HHHHHHHHHHHHHh
Q 002999 726 NCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGL-LQERTVWMLERVLR 802 (859)
Q Consensus 726 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~-~~~~A~~~l~~~~~ 802 (859)
.++..|-+=|.++++.++..|+..|..++.+-+. .-...+...+-+..|..++....+.. ++++...++.....
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~---~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGS---KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH---HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4688888889999999999999999999987221 23466777788888988887544444 89999888888764
No 366
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.30 E-value=62 Score=36.84 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=67.8
Q ss_pred cchHHHHHHh-hcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhh-cCCChhHHHHHHHHHHHHhhhc
Q 002999 455 ESIVSSLLGL-LSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFL-EHPEVEHRTYAFRLTRILSERI 532 (859)
Q Consensus 455 ~~~i~~Ll~L-L~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~~L~~Ls~~~ 532 (859)
.++|..|++. +++++.++++.|..+|.-+|....+ .+...+++| ++.+..||...+-+|.-.+...
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------------~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------------LLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc------------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 4678888887 6788889999999999888876532 234445554 4567789988888887665333
Q ss_pred cHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhc
Q 002999 533 GQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQ 574 (859)
Q Consensus 533 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 574 (859)
+.. -++..|-.+..+..+ -++..|+-+++-+.
T Consensus 618 G~~--------~a~diL~~L~~D~~d--fVRQ~AmIa~~mIl 649 (926)
T COG5116 618 GDK--------VATDILEALMYDTND--FVRQSAMIAVGMIL 649 (926)
T ss_pred ccH--------HHHHHHHHHhhCcHH--HHHHHHHHHHHHHH
Confidence 322 244556666667665 78888887777664
No 367
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=40.62 E-value=2e+02 Score=25.01 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=58.0
Q ss_pred HHHHHHHHHH-HhcccCcchHHHHH-hhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhh
Q 002999 214 ILRSKALMAL-LSMAKDEESKKIML-EEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMT 291 (859)
Q Consensus 214 ~~~~~al~~L-~~L~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL 291 (859)
++|..|+.-+ ..+-..--.-..++ ..+.+..|+.-.+.......+.+...|..+..++.....+. .-|+...|-++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~-~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILR-DIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHH-HccHHHHHHHHH
Confidence 5677776533 23322211112222 34567777777777777788999999999999987766665 578888876665
Q ss_pred cCCCChHHHHHHHHHH
Q 002999 292 GNLELPALSNLADEVF 307 (859)
Q Consensus 292 ~~~~~~~~~~~a~~aL 307 (859)
. .-++..+...-.++
T Consensus 81 ~-~~~~~~~~~id~il 95 (98)
T PF14726_consen 81 P-NVEPNLQAEIDEIL 95 (98)
T ss_pred h-cCCHHHHHHHHHHH
Confidence 5 44555554444443
No 368
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=40.50 E-value=3.7e+02 Score=26.40 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=66.1
Q ss_pred HHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcC----Ch---------------HHHHHHhhhcCchhHH
Q 002999 730 PLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREG----AL---------------DAVVDLFTEVRPGLLQ 790 (859)
Q Consensus 730 ~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g----~i---------------~~L~~ll~~~~~~~~~ 790 (859)
.+--++.++++.++.+|+.+|..|+.. .. .....-.+.. .. ..|+..++...+....
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~g-sk---~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEG-SK---PFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHc-cH---HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 444456689999999999999999955 21 1111112111 11 1233444322344444
Q ss_pred HHHHHHHHHHHhcccccc-ccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHhhhc
Q 002999 791 ERTVWMLERVLRVEGHSH-RYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLKQIS 846 (859)
Q Consensus 791 ~~A~~~l~~~~~~~~~~~-~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 846 (859)
-....+|..+....-|.+ .-+--..++..+-.++.+.|+.++..+..++..|...+
T Consensus 120 ~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 445555555554333322 22222334566667889999999999999988877653
No 369
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.62 E-value=29 Score=37.03 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHh
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLE 238 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~ 238 (859)
-.+.|..+|..++++++.+.+.|+++.+++-..-+|.++ -+++..+-+++.|..+ .+|++.|..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nP--fi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNP--FIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCCh--HHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 455789999999999999999999999887765433222 9999999999999988 778877765
No 370
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=39.60 E-value=23 Score=32.34 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=37.7
Q ss_pred cccCcccccccCC--Cee-cCCC------chhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc
Q 002999 76 NFLCPLTKQVMKE--PVV-LESA------QAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP 133 (859)
Q Consensus 76 ~~~cpi~~~~m~d--Pv~-~~~g------~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p 133 (859)
.+.|.||.+-..+ =|+ +++| +-||.+|+++|-.. +..+|+.|...-..+..|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~------~~rDPfnR~I~y~F~fPf 86 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE------RNRDPFNRNIKYWFNFPF 86 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh------ccCCCcccceEEEEeCCC
Confidence 3779999998887 553 4666 46899999999654 679999986543334433
No 371
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=39.08 E-value=14 Score=43.23 Aligned_cols=64 Identities=19% Similarity=0.395 Sum_probs=45.5
Q ss_pred ccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHH
Q 002999 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEE 143 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~ 143 (859)
..||||.+...+|+.+.|-|.||+.|+-.-|... ++ ...||+|+.........-...-.+++++
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~--~~-~~~~~lc~~~~eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIFLKFCLNKLFESK--KG-PKQCALCKSDIEKRSLRESPRFSQLSKE 85 (684)
T ss_pred ccCCceeEEeeccchhhhhHHHHhhhhhceeecc--Cc-cccchhhhhhhhhhhccccchHHHHHHH
Confidence 6699999999999999999999999998888762 12 4679999755433222223333445553
No 372
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=38.79 E-value=3.2e+02 Score=26.82 Aligned_cols=136 Identities=16% Similarity=0.096 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcccCcc------hHHHHH------hhCc-hHHHHHHhcCCCHHHHHHHHHHHHHhccChhhh-------
Q 002999 215 LRSKALMALLSMAKDEE------SKKIML------EEGV-TKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYC------- 274 (859)
Q Consensus 215 ~~~~al~~L~~L~~~~~------~r~~i~------~~g~-i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~------- 274 (859)
+|..|+.+|..++..-+ ++..+. ..+. ...+.-++.++++.+|..|+.+|..|-.....-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 46667777766665411 122221 1123 344445567778899999999988876543110
Q ss_pred -----------hHhhh-hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHH----HhccCCh
Q 002999 275 -----------KSVAS-EKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLIN----RLCQGSD 338 (859)
Q Consensus 275 -----------~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~----lL~~~~~ 338 (859)
..++. -...-..|+..|+...++.+....+.+|..|..+....+. +.|.++.++. ++.+.+.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhcCCC
Confidence 00100 0113345666666456777778888888888765332111 2355555554 3455666
Q ss_pred HHHHHHHHHHHHhc
Q 002999 339 NVQIEMAFLVGKLT 352 (859)
Q Consensus 339 ~~~~~aa~~L~~la 352 (859)
+++..+..+++.+.
T Consensus 160 ~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 160 NVRVAALSCLGALL 173 (182)
T ss_pred cHHHHHHHHHHHHH
Confidence 66666666655543
No 373
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=38.31 E-value=21 Score=37.22 Aligned_cols=43 Identities=23% Similarity=0.490 Sum_probs=33.5
Q ss_pred cccCcccccccC----CCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCc
Q 002999 76 NFLCPLTKQVMK----EPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQ 124 (859)
Q Consensus 76 ~~~cpi~~~~m~----dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~ 124 (859)
++-|||+.+-|- +|..++|||+.-..+.++.... +.+||.+..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~------~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE------GYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc------CCCCCcccc
Confidence 366999988765 5778899999887777777765 589999854
No 374
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.27 E-value=7.3e+02 Score=29.23 Aligned_cols=208 Identities=16% Similarity=0.116 Sum_probs=106.3
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccC---hhhhhHhh--hhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC--
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCID---EAYCKSVA--SEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-- 313 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~---~~~~~~i~--~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-- 313 (859)
.+-.|+++|+.-+.+.......-+.. ... .-..+.+. .+..++..+..++. .+.... ..++.++..+...
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~-~~~~~~-~ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIK-NKKITP-LEAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-cCCCCH-HHHHHHHHHHHHhhh
Confidence 45667777766554444444333332 100 11122221 24557788888777 333221 1222222222211
Q ss_pred CcChHHHHhcCChHHHHHHhccC----ChHHHHHHHHHHHHhc----CCCccH-HHHHHhhHHHHHHHhC------ChhH
Q 002999 314 EEIVQPLAAAGRFEPLINRLCQG----SDNVQIEMAFLVGKLT----LTNSCK-EHIARQCAKVLVELLS------KPAG 378 (859)
Q Consensus 314 ~~~~~~i~~~G~i~~Lv~lL~~~----~~~~~~~aa~~L~~la----~~~~~~-~~i~~~gi~~Lv~lL~------~~~~ 378 (859)
..+.. .+..+..++.++ ...++..+.-+++.+. .+.+.+ ..+.+.-++.|.+.|. +..-
T Consensus 389 ~Pt~~------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 389 YPTEE------ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred cCCHH------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 11111 344566666532 3344444444444443 333322 3344445566666554 3444
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchH
Q 002999 379 RAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIV 458 (859)
Q Consensus 379 ~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i 458 (859)
+...+++|.|+... ..++.|..++......+..++..|+++|..++...+. .+.
T Consensus 463 ~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~----------------~v~ 516 (574)
T smart00638 463 IQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR----------------KVQ 516 (574)
T ss_pred eeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch----------------HHH
Confidence 56678888887432 2345556666532345678999999999988753322 234
Q ss_pred HHHHHhhcCC--ChHHHHHHHHHHHHh
Q 002999 459 SSLLGLLSGV--SPQCQVSTLRILCGI 483 (859)
Q Consensus 459 ~~Ll~LL~~~--~~~~~~~a~~aL~~L 483 (859)
+.|+.++.+. +++++..|..+|...
T Consensus 517 ~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 517 EVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 5566666553 457777776666554
No 375
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=37.75 E-value=30 Score=26.22 Aligned_cols=28 Identities=21% Similarity=0.558 Sum_probs=24.1
Q ss_pred CcccCccccccc--CCCeec--CCCchhcHHH
Q 002999 75 KNFLCPLTKQVM--KEPVVL--ESAQAYERKA 102 (859)
Q Consensus 75 ~~~~cpi~~~~m--~dPv~~--~~g~t~~r~~ 102 (859)
+.-.||+|++.+ .|.+++ .||-.|=|.|
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 346799999999 788876 7999999999
No 376
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=37.15 E-value=5.1e+02 Score=27.09 Aligned_cols=176 Identities=15% Similarity=0.139 Sum_probs=96.0
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhh--------hChHHHHHHhhcCCCC----hHHHHHHHHHH
Q 002999 240 GVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASE--------KGALVLLSSMTGNLEL----PALSNLADEVF 307 (859)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~--------~g~i~~Lv~lL~~~~~----~~~~~~a~~aL 307 (859)
|..+.+++=|.+. ...+.+..+|..|+..++. .-++.. -+.+|.+..-+. .++ ......++..|
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~-~lig~~~~rll~~~la~LP~ll~~~d-~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDD-PLIGDSQSRLLFLLLALLPRLLHAFD-DPNPIQPDQECIEIAEAL 139 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCc-cccCCCCccHHHHHHHHHHHHHHHhc-ccccccccHHHHHHHHHH
Confidence 3334444444443 4567778888888765432 122211 223444444444 333 13345666777
Q ss_pred HHhcCCCcChHHHHhcCChHHHHHHhc----cCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHH
Q 002999 308 KKMERIEEIVQPLAAAGRFEPLINRLC----QGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAA 381 (859)
Q Consensus 308 ~nL~~~~~~~~~i~~~G~i~~Lv~lL~----~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~ 381 (859)
..+|..... +.+..++.... ....+....++..|..--..+- .-..+..|+++|. .+.++..
T Consensus 140 a~~a~~~~~-------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~-----~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 140 AQVAEAQGL-------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH-----EFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHHHhCCC-------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHhCCcHHHHHH
Confidence 777733211 12223333332 2234444445555443211110 1112356777777 5678889
Q ss_pred HHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCC
Q 002999 382 SLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPG 438 (859)
Q Consensus 382 a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~ 438 (859)
.+.+|..+-..-+.+.. .....+.+|+++|++ ..-.+|+.+|.+....+.
T Consensus 208 ~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t------~~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSP-HGADLISPLLRLLQT------DLWMEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHHHhccccCCCC-cchHHHHHHHHHhCC------ccHHHHHHHHHHHHhhcc
Confidence 99999999876654433 556689999999965 345688888887766543
No 377
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=35.84 E-value=1.2e+03 Score=30.83 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=85.5
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcch--HHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC-h
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEES--KKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID-E 271 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~ 271 (859)
+.+..++..|..+.. .+|..|+++|..+..-+.. ....+..| +-.-+...+..+|+.|+.++...... +
T Consensus 816 ~yLk~Il~~l~e~~i----alRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~DssasVREAaldLvGrfvl~~~ 887 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAI----ALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSSASVREAALDLVGRFVLSIP 887 (1692)
T ss_pred HHHHHHHHHhcCchH----HHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccchhHHHHHHHHHHhhhhhccH
Confidence 456677788886666 9999999999999775321 11222223 33344456678999999999875443 3
Q ss_pred hhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 002999 272 AYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKL 351 (859)
Q Consensus 272 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~l 351 (859)
+...+.. ..+..=.. .....+++.+...|+.+|...++-..+.+ ....++....+....++..+..++.++
T Consensus 888 e~~~qyY------~~i~erIl-DtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 888 ELIFQYY------DQIIERIL-DTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHHH------HHHHhhcC-CCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 3333322 11222222 45678899999999999976554444333 122233333333344777777777766
Q ss_pred cC
Q 002999 352 TL 353 (859)
Q Consensus 352 a~ 353 (859)
=.
T Consensus 959 WF 960 (1692)
T KOG1020|consen 959 WF 960 (1692)
T ss_pred hc
Confidence 44
No 378
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=35.07 E-value=17 Score=38.35 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=18.8
Q ss_pred ccCcccccccC--CC-eecCCCchhcHHH
Q 002999 77 FLCPLTKQVMK--EP-VVLESAQAYERKA 102 (859)
Q Consensus 77 ~~cpi~~~~m~--dP-v~~~~g~t~~r~~ 102 (859)
|.||+|+.-|. +. ..=++||+||..-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 89999999985 33 2336688888653
No 379
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=33.00 E-value=2.7e+02 Score=25.58 Aligned_cols=129 Identities=22% Similarity=0.235 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhhcCC--CcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCC----------
Q 002999 420 PELKELAAATIANVVSNP--GCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSP---------- 487 (859)
Q Consensus 420 ~~~~~~a~~~L~nL~~~~--~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~---------- 487 (859)
.-++.+.+.++..++... ..|. .+++.++.+++. ++......+.+|..+...-
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp--------------~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~ 66 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWP--------------DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQ 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTST--------------THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCc--------------hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhH
Confidence 346677777888777654 4444 357888888777 4666666666666554321
Q ss_pred hhHHHHHHHHhhC--CCHHHHHHhhcCCC----hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchh
Q 002999 488 QAAESVATHIKSG--DGIKYIIQFLEHPE----VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANC 561 (859)
Q Consensus 488 ~~~~~~~~~i~~~--g~i~~Lv~lL~~~~----~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~ 561 (859)
.-+..+.+.+.+. ..+..+...+.... .++...+++++.......+. +.+...+.++.+.++|.+++
T Consensus 67 ~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~---~~i~~~~~l~~~~~~l~~~~---- 139 (148)
T PF08389_consen 67 ERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPI---ELIINSNLLNLIFQLLQSPE---- 139 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H---HHHHSSSHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH---HHhccHHHHHHHHHHcCCHH----
Confidence 1122333334433 22333444444433 56677778877776543332 34455678999999995554
Q ss_pred HHHHHHHHH
Q 002999 562 ERSDAACIL 570 (859)
Q Consensus 562 ~~~~A~~~L 570 (859)
.+..|+.+|
T Consensus 140 ~~~~A~~cl 148 (148)
T PF08389_consen 140 LREAAAECL 148 (148)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 355665543
No 380
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.92 E-value=6.5e+02 Score=27.97 Aligned_cols=153 Identities=17% Similarity=0.256 Sum_probs=79.5
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhccc--cc----HHHHHhhhhcCCCccchHHHHH
Q 002999 101 KAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNVE--VQ----VSTVVETLRKENPEVDGLDKAL 174 (859)
Q Consensus 101 ~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~~--~~----i~~l~~~L~~~~~~~~~~~~al 174 (859)
..|+-|+.+ .|+|+.++ .+ -++|.-||++-.. .+ +.-+-+.|++.+. .+.+ +|+
T Consensus 7 ~sle~wlnr-------ATdp~~~e----ed-------w~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe-~EAl-~al 66 (594)
T KOG1086|consen 7 ESLEYWLNR-------ATDPSNDE----ED-------WKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQE-WEAL-QAL 66 (594)
T ss_pred ccHHHHHHh-------ccCccchH----HH-------HHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhH-HHHH-HHH
Confidence 457888864 68887643 22 3467777776432 12 2233344554332 2333 366
Q ss_pred HHHHHHHhcCCc-chhHHHhcCcHHHHHHHHhcCCC--CcchHHHHHHHHHHHhcccC----cchHH---HHHhhCch--
Q 002999 175 DIVFKISEEHPS-NRYRVRNAGVVLLIVKLLKSSSK--SVGTILRSKALMALLSMAKD----EESKK---IMLEEGVT-- 242 (859)
Q Consensus 175 ~~L~~l~~~~~~-~r~~i~~~g~i~~Lv~lL~~~~~--~~~~~~~~~al~~L~~L~~~----~~~r~---~i~~~g~i-- 242 (859)
..|.-+.+...+ ....+.+...+.-|+++++-... -.+..++...+..|...... ...|+ .+-..|.|
T Consensus 67 tvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lpe~~KikdaYqmLKkqgIik~ 146 (594)
T KOG1086|consen 67 TVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLPEEPKIKDAYQMLKKQGIIKS 146 (594)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCcccchHHHHHHHHHhcCcccC
Confidence 666665553221 12223333344456666532100 01126677777777665432 11111 11122222
Q ss_pred -----------------------------HHHHHHhcCCCHHHHHHHHHHHHHhccChhh
Q 002999 243 -----------------------------KSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY 273 (859)
Q Consensus 243 -----------------------------~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 273 (859)
..|.++|+|.+++-.+.|-.++.+|...++.
T Consensus 147 DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn~PeDLqaANkLIK~lVkeee~ 206 (594)
T KOG1086|consen 147 DPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEEEH 206 (594)
T ss_pred CCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 2566788888888888888888888776654
No 381
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.92 E-value=3.7e+02 Score=28.66 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=78.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCc-cHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcH
Q 002999 329 LINRLCQGSDNVQIEMAFLVGKLTLTNS-CKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALL 405 (859)
Q Consensus 329 Lv~lL~~~~~~~~~~aa~~L~~la~~~~-~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i 405 (859)
.+..|.+.+=+.+..+...|..|+..+. ...-+-+..+..+++-++ ...+-+.|+.++..+...-.+. +.+ ..
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i~~--~l 168 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--IDQ--EL 168 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--HHH--HH
Confidence 3444445555555556666666655432 222223445567777777 4456677888888776543221 122 33
Q ss_pred HHHHH-HHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002999 406 PALTD-ILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGI 483 (859)
Q Consensus 406 ~~Lv~-lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~L 483 (859)
..++. ||.....+..-+++.|-.+|..++.+-. -..+++.|+..+.+..+.++..++..+.++
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt---------------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT---------------PQKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC---------------hHHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 44444 3433344556788999999988876532 233567777777888887777766544443
No 382
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=31.58 E-value=8.2e+02 Score=27.81 Aligned_cols=232 Identities=18% Similarity=0.142 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhh
Q 002999 214 ILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMT 291 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL 291 (859)
..|..|+++|+.++.. +..-..+.+. .|+..|++.+..-|..|+.+|.+.+........-.......+.|..+|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~----~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQP----LLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHH----HHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 5677778888877665 2222222222 688899998877788888888888765432211110123556677777
Q ss_pred cCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcCChH-----HHHHHhc---c-C----ChHHHHHHHH-HHHHhcC--C
Q 002999 292 GNLELPALSNLADEVFKKMER-IEEIVQPLAAAGRFE-----PLINRLC---Q-G----SDNVQIEMAF-LVGKLTL--T 354 (859)
Q Consensus 292 ~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i~-----~Lv~lL~---~-~----~~~~~~~aa~-~L~~la~--~ 354 (859)
. .+.+..-......+..+-. ...-...+.+.|.++ .|-...+ . + +.+.....+. ....+.. .
T Consensus 178 ~-~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 178 E-NPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred c-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 6 2222111111111111111 111122333444422 1111111 0 0 1122222222 1111211 1
Q ss_pred CccH----HHHH--HhhHHHHHHHhC------ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHH
Q 002999 355 NSCK----EHIA--RQCAKVLVELLS------KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPEL 422 (859)
Q Consensus 355 ~~~~----~~i~--~~gi~~Lv~lL~------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 422 (859)
...| ..+. ..-+...+...+ +..++...+.|+..+..-++--. -+|.+|++-++. +.+..+
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLn-----PiIrpLMdSIK~--Een~~L 329 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLN-----PIIRPLMDSIKR--EENELL 329 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc-----HHHHHHHHHhhc--cccHHH
Confidence 1111 1121 112222222222 55667777777777765553221 245677777765 566899
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhc
Q 002999 423 KELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLS 466 (859)
Q Consensus 423 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~ 466 (859)
|..++..|+.|......+.. -....+|..|..+|.
T Consensus 330 Q~rsA~slA~Li~~~~~rkp---------~PndKIvkNLc~flC 364 (441)
T PF12054_consen 330 QQRSAESLARLIQLCVDRKP---------CPNDKIVKNLCTFLC 364 (441)
T ss_pred HHHHHHHHHHHHHHHhCCCC---------CCcHHHHHHHhhhhc
Confidence 99999999988654432221 234567777777773
No 383
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=31.48 E-value=58 Score=28.48 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=23.6
Q ss_pred cccCcccccccCCCee--cCCCchhcHHHHH
Q 002999 76 NFLCPLTKQVMKEPVV--LESAQAYERKAIE 104 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~--~~~g~t~~r~~I~ 104 (859)
+-.|++|+.-+.+++. -||||.|-..|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4669999999997773 3999999888864
No 384
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=31.10 E-value=37 Score=29.74 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=15.6
Q ss_pred CCeec---CCCchhcHHHHHHHHH
Q 002999 88 EPVVL---ESAQAYERKAIEYWFE 108 (859)
Q Consensus 88 dPv~~---~~g~t~~r~~I~~~~~ 108 (859)
.||-+ .++ |.||.||++|=.
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC
Confidence 69854 344 899999999964
No 385
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=30.70 E-value=1.6e+02 Score=29.03 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=50.4
Q ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002999 775 DAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLKQ 844 (859)
Q Consensus 775 ~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 844 (859)
+.++++.. +++..++..|+..++-+.+- .+..-...++.||.+..+.++.+|..|-..|..|..
T Consensus 11 ~~Il~~~~-~~~~~vr~~Al~~l~~il~q-----GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 11 KNILELCL-SSDDSVRLAALQVLELILRQ-----GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHHHhc-----CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 44566665 48999999999999999852 222233345899999999999999999999998865
No 386
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=30.38 E-value=24 Score=35.60 Aligned_cols=49 Identities=12% Similarity=0.377 Sum_probs=33.8
Q ss_pred CCCe-ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHH
Q 002999 87 KEPV-VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWV 145 (859)
Q Consensus 87 ~dPv-~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~ 145 (859)
.||. ++.|+|.||-.|-..-. ...||.|+.++....+.+| |...|..+.
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~--------~~~C~lCkk~ir~i~l~~s--lp~~ik~~F 64 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS--------PDVCPLCKKSIRIIQLNRS--LPTDIKSYF 64 (233)
T ss_pred CCceeeeechhhhhhhhcccCC--------ccccccccceeeeeecccc--cchhHHHHc
Confidence 6777 77999999988843221 3499999999766666655 444454443
No 387
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.97 E-value=2.3e+02 Score=25.41 Aligned_cols=32 Identities=31% Similarity=0.241 Sum_probs=29.3
Q ss_pred cCCchHHHhhhccCChhHHHHHHHHHHhhhhc
Q 002999 725 SNCIKPLVDLLAEEDTNVEIAAVEALSTLIID 756 (859)
Q Consensus 725 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d 756 (859)
.-+|+.||+-|.+++.+|+..|+..|.....+
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999999999977
No 388
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.85 E-value=69 Score=34.98 Aligned_cols=47 Identities=15% Similarity=0.336 Sum_probs=34.9
Q ss_pred cccCcccccccCCC---eecCCCchhcHHHHHHHHHhcccCCC--CCCCCCC
Q 002999 76 NFLCPLTKQVMKEP---VVLESAQAYERKAIEYWFERCLEDGR--DPTCPVT 122 (859)
Q Consensus 76 ~~~cpi~~~~m~dP---v~~~~g~t~~r~~I~~~~~~~~~~~~--~~~cP~t 122 (859)
.|.|-||.+...-. +.+||+|.||++|...++......|. .-.||-.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~ 235 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDP 235 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCC
Confidence 48899999876543 36799999999999999887544442 2357754
No 389
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.46 E-value=24 Score=37.77 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=27.4
Q ss_pred CCcccCcccccccCCC---e-ecCCCchhcHHHHHHH
Q 002999 74 FKNFLCPLTKQVMKEP---V-VLESAQAYERKAIEYW 106 (859)
Q Consensus 74 ~~~~~cpi~~~~m~dP---v-~~~~g~t~~r~~I~~~ 106 (859)
..+|.||++..+|.+= | +..+|..||-++|++.
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~L 135 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEEL 135 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHh
Confidence 3679999999999973 3 3478999999999985
No 390
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=28.27 E-value=78 Score=19.99 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHh
Q 002999 562 ERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQ 597 (859)
Q Consensus 562 ~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~ 597 (859)
++..|+.+|+.+.. ..+++.|+..|+
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 46788899998886 234566665554
No 391
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=28.08 E-value=6.6e+02 Score=25.63 Aligned_cols=136 Identities=16% Similarity=-0.012 Sum_probs=81.1
Q ss_pred HHHHHHH-hcCCCCcchHHHHHHHHHHHhcccCc-chHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhh
Q 002999 198 LLIVKLL-KSSSKSVGTILRSKALMALLSMAKDE-ESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCK 275 (859)
Q Consensus 198 ~~Lv~lL-~~~~~~~~~~~~~~al~~L~~L~~~~-~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 275 (859)
|.|+.-+ +..++ ..+...+.+|..++.++ .+... ++..|..+...++.+.+.-+.+.+..+-..++-.
T Consensus 3 ~~L~~~l~~~~~~----~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~- 72 (234)
T PF12530_consen 3 PLLLYKLGKISDP----ELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH- 72 (234)
T ss_pred HHHHHHhcCCCCh----HHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-
Confidence 4444433 33455 89999999999999886 43333 3455666666666666556666776665543211
Q ss_pred HhhhhhChHHHHHHhh-----c----CCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh-ccCChHHHHHHH
Q 002999 276 SVASEKGALVLLSSMT-----G----NLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL-CQGSDNVQIEMA 345 (859)
Q Consensus 276 ~i~~~~g~i~~Lv~lL-----~----~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL-~~~~~~~~~~aa 345 (859)
.+.+..++..+ . .+...+.....+..+..+|....++. ...++.+..+| .+.++..+..+.
T Consensus 73 -----f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alal 143 (234)
T PF12530_consen 73 -----FPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALAL 143 (234)
T ss_pred -----HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHH
Confidence 12334333331 1 11222333444567888886555421 12567788888 677788888888
Q ss_pred HHHHHhc
Q 002999 346 FLVGKLT 352 (859)
Q Consensus 346 ~~L~~la 352 (859)
.+|..++
T Consensus 144 e~l~~Lc 150 (234)
T PF12530_consen 144 EALAPLC 150 (234)
T ss_pred HHHHHHH
Confidence 8888777
No 392
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.95 E-value=15 Score=37.83 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=31.0
Q ss_pred cccCcccccccCCCeecCCCchh-cHHHHHHHHHhcccCCC-CCCCCCCCccc
Q 002999 76 NFLCPLTKQVMKEPVVLESAQAY-ERKAIEYWFERCLEDGR-DPTCPVTGQVL 126 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t~-~r~~I~~~~~~~~~~~~-~~~cP~t~~~l 126 (859)
.-+|-||++.-.|=|.++|||.. |-+| |. -..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-----------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-----------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-----------ccccccCchHHHHH
Confidence 57899999999999999999854 3333 32 24799998865
No 393
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=27.20 E-value=1.7e+02 Score=28.74 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=51.5
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI 313 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~ 313 (859)
.++.++++.-+.+..++..|+.+|..+..- -+..-.-++|.|+.|.. ++++.++..|...+..+...
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~q-----GLvnP~~cvp~lIAL~t-s~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQ-----GLVNPKQCVPTLIALET-SPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-----CCCChHHHHhHhhhhhC-CCChHHHHHHHHHHHHHHHH
Confidence 467777888888889999999988876432 11111237999999999 89999999999999998743
No 394
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=26.67 E-value=3.3e+02 Score=28.81 Aligned_cols=142 Identities=12% Similarity=0.123 Sum_probs=70.8
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHH----HHHHhhc--------CCChH
Q 002999 404 LLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVS----SLLGLLS--------GVSPQ 471 (859)
Q Consensus 404 ~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~----~Ll~LL~--------~~~~~ 471 (859)
++|+++.++.. .....|..++.+|..+..+....... .+.+.|..+ .|..++- ..+..
T Consensus 120 iiP~iL~llDD---~~~~~K~~G~~lL~~ll~~~~~~~~~-------~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~ 189 (282)
T PF10521_consen 120 IIPPILNLLDD---YSPEIKIQGCQLLHHLLEKVPAAEWD-------ILRRTGLFSVFEDALFPCLYYLPPITPEDESLE 189 (282)
T ss_pred HHhhHHHHhcC---CCHHHHHHHHHHHHHHHHhCChhhhH-------HHHHcChHHHHHHHHHHHhhcCCCCCCchhhHH
Confidence 58999999954 56899999999999998765432200 123333222 2222332 22335
Q ss_pred HHHHHHHHHHHhcc-----CChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCch
Q 002999 472 CQVSTLRILCGIAS-----SPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKL 546 (859)
Q Consensus 472 ~~~~a~~aL~~La~-----~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i 546 (859)
+...+.-+|..|+. +...+......+...|.+..+...-+.+.++++...+..+..+....+-.....+. ..+
T Consensus 190 Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~--rii 267 (282)
T PF10521_consen 190 LLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ--RII 267 (282)
T ss_pred HHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH--HHH
Confidence 55666666666632 11111111222222233333322222234566665555555555444444433443 355
Q ss_pred HHHHHhhccCC
Q 002999 547 VLFKDKILDNQ 557 (859)
Q Consensus 547 ~~Lv~lL~~~~ 557 (859)
+.|.+.+++..
T Consensus 268 ~~l~~~l~npf 278 (282)
T PF10521_consen 268 PVLSQILENPF 278 (282)
T ss_pred HHHHHHhcCCC
Confidence 55555555443
No 395
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=26.54 E-value=81 Score=27.85 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHH
Q 002999 215 LRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEK 257 (859)
Q Consensus 215 ~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~ 257 (859)
-....+..|..|+..++.-..+++.|+++.|+.+|.+.+.++.
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 3566788889999999888889999999999999998876543
No 396
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.52 E-value=5.7e+02 Score=24.37 Aligned_cols=80 Identities=9% Similarity=0.095 Sum_probs=54.0
Q ss_pred HHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC--hhhhhHhhhhhChHHHHHH-hhcCCC-ChHHHHHHHHHHHHhc
Q 002999 236 MLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID--EAYCKSVASEKGALVLLSS-MTGNLE-LPALSNLADEVFKKME 311 (859)
Q Consensus 236 i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~-lL~~~~-~~~~~~~a~~aL~nL~ 311 (859)
+.+....+.|.+.+.+.+..+...+++++..+... ...+.++.. .+..++. ++..+. ....+..+++++..++
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~---~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV---FLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 44556788888888877788888999999888754 233333321 4555555 666222 3466788999999999
Q ss_pred CCCcChH
Q 002999 312 RIEEIVQ 318 (859)
Q Consensus 312 ~~~~~~~ 318 (859)
..+....
T Consensus 146 ~~p~~l~ 152 (168)
T PF12783_consen 146 KDPQFLV 152 (168)
T ss_pred hChhHHH
Confidence 8776543
No 397
>PLN02195 cellulose synthase A
Probab=25.81 E-value=55 Score=40.19 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=35.9
Q ss_pred cCccccc-----ccCCCeec--CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 78 LCPLTKQ-----VMKEPVVL--ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 78 ~cpi~~~-----~m~dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
.|.||++ .+-+|.+. .||.-.||.|.|-=-.+ | +..||.|+...++
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~e----g-~q~CpqCkt~Yk~ 60 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKE----G-RKVCLRCGGPYDA 60 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhc----C-CccCCccCCcccc
Confidence 5999987 45578876 78999999999643433 5 7899999988874
No 398
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=25.65 E-value=51 Score=35.91 Aligned_cols=42 Identities=21% Similarity=0.416 Sum_probs=29.4
Q ss_pred CeecCCCchhcH-----HHHHHHHHhcccCCC-------CCCCCCCCcccCCCC
Q 002999 89 PVVLESAQAYER-----KAIEYWFERCLEDGR-------DPTCPVTGQVLKSLE 130 (859)
Q Consensus 89 Pv~~~~g~t~~r-----~~I~~~~~~~~~~~~-------~~~cP~t~~~l~~~~ 130 (859)
|..-+|+.-||| +|+-+||.+.+.+.+ +.+||.||.++.-.|
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 334467777765 899999998664432 467999999875444
No 399
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.47 E-value=1e+03 Score=27.09 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=68.0
Q ss_pred cchHHHHHHhh----cCCChHHHHHHHHHHHHhccC-ChhHHHHHHHHhhCCCHHHHHH-hhcCCChhHHHHHHHHHHHH
Q 002999 455 ESIVSSLLGLL----SGVSPQCQVSTLRILCGIASS-PQAAESVATHIKSGDGIKYIIQ-FLEHPEVEHRTYAFRLTRIL 528 (859)
Q Consensus 455 ~~~i~~Ll~LL----~~~~~~~~~~a~~aL~~La~~-~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~A~~~L~~L 528 (859)
.+....++..+ .+++...+..|++.|.++++. |.........+ +..++. +.+..+.+|...+..+|..+
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~-----ldaii~gL~D~~~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ-----LDAIIRGLYDDLNEEVQLEAMKCLTMV 327 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH-----HHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34444444433 344557888899999999988 43222222222 344444 44555678999999988888
Q ss_pred hh-hccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 529 SE-RIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 529 s~-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
.. ..+.+....+. ...-.+..+..+.++ +.+.+|-.+++.|+.
T Consensus 328 ~~~~~~~~l~~~~l--~ialrlR~l~~se~~--~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 328 LEKASNDDLESYLL--NIALRLRTLFDSEDD--KMRAAAFVLFGALAK 371 (533)
T ss_pred HHhhhhcchhhhch--hHHHHHHHHHHhcCh--hhhhhHHHHHHHHHH
Confidence 62 22233322333 345567778888887 788877766666543
No 400
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=25.42 E-value=50 Score=27.96 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=17.3
Q ss_pred eecCCCchhcHHHHHHHHHh
Q 002999 90 VVLESAQAYERKAIEYWFER 109 (859)
Q Consensus 90 v~~~~g~t~~r~~I~~~~~~ 109 (859)
|++|.|+.||+..|..-+++
T Consensus 10 VtIp~G~KYdK~wLl~~iq~ 29 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS 29 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH
T ss_pred EEecCCcccCHHHHHHHHHH
Confidence 68899999999999999876
No 401
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.97 E-value=99 Score=37.37 Aligned_cols=33 Identities=9% Similarity=0.187 Sum_probs=25.5
Q ss_pred ccCcccccccC-CCeec-CCCchhcHHHHHHHHHh
Q 002999 77 FLCPLTKQVMK-EPVVL-ESAQAYERKAIEYWFER 109 (859)
Q Consensus 77 ~~cpi~~~~m~-dPv~~-~~g~t~~r~~I~~~~~~ 109 (859)
=.|-+|+..+- -|..+ ||||.|-|.||+++...
T Consensus 818 d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 818 DSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred cchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 34777766433 48755 99999999999999876
No 402
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.88 E-value=53 Score=34.61 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=47.1
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhh-HhHHHHHHHhcccccH
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGL-AGAIEEWVNRNVEVQV 153 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l-~~~I~~w~~~~~~~~i 153 (859)
++-.|-||-+-..=--++||||..|..|=-+.-.-. +...||+|+..-....+.-.+.. -.-...|+.++...+|
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY----~~K~C~~CrTE~e~V~fT~~~~~DI~D~~~~k~~~EK~GI 135 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALY----MQKGCPLCRTETEAVVFTASSPADITDRRQWKGREEKVGI 135 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHH----hccCCCccccccceEEEecCCCCcchhHhhhcccccceee
Confidence 557899999887777789999999999866554431 15689999854321111111111 1124578887766543
No 403
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=24.13 E-value=1.3e+03 Score=27.55 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHhccChhhhhHhhh---hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhc--CChH
Q 002999 253 SEKEKEYAVKLLLEFCIDEAYCKSVAS---EKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAA--GRFE 327 (859)
Q Consensus 253 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~--G~i~ 327 (859)
..+.+--|+.+|+-+..+...-..+.. .+..+..++..+. .++..+..++++|.|+-.++.++..+... -.+.
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~ 634 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGRELFMSRLESILD 634 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 456667777888777665432222211 1225555555555 56777888999999999887777655543 1222
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcC--CCccHHHHHHhhHHHHHH----HhC---ChhHHHHHHHHHHHhhCCCcchHH
Q 002999 328 PLINRLCQGSDNVQIEMAFLVGKLTL--TNSCKEHIARQCAKVLVE----LLS---KPAGRAASLKALYNLSGLDDNATI 398 (859)
Q Consensus 328 ~Lv~lL~~~~~~~~~~aa~~L~~la~--~~~~~~~i~~~gi~~Lv~----lL~---~~~~~~~a~~aL~~Ls~~~~~~~~ 398 (859)
++++.=...+..++...+...-|++. ..++-. .++.+.|.. ++. +.+..-..+.||.+|+..+.....
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~---~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ---LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 22222222335666666655555432 111111 122233333 333 444556678889999988878777
Q ss_pred HHHcCcHHHHHHHHhc
Q 002999 399 LVDSALLPALTDILFK 414 (859)
Q Consensus 399 i~~~G~i~~Lv~lL~~ 414 (859)
+...-.+..++.-++.
T Consensus 712 ~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 712 LAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHhcCHHHHHHHHHH
Confidence 7776677888887776
No 404
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.71 E-value=85 Score=34.89 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=33.6
Q ss_pred cccCcccc-cccCC---CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCC
Q 002999 76 NFLCPLTK-QVMKE---PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTG 123 (859)
Q Consensus 76 ~~~cpi~~-~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~ 123 (859)
...|+||. +.+.. -.+..|||-||..|..+|+.....+|....||--+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~ 197 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDG 197 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCC
Confidence 37799998 33222 11567999999999999999644345457787754
No 405
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=23.64 E-value=2.3e+02 Score=30.75 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhCCCcchHHHHHcC--cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCC
Q 002999 378 GRAASLKALYNLSGLDDNATILVDSA--LLPALTDILFKSHDASPELKELAAATIANVVSNPG 438 (859)
Q Consensus 378 ~~~~a~~aL~~Ls~~~~~~~~i~~~G--~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~ 438 (859)
++-.|..+|..+...+.....+...+ .+..|++++.....-+..++..|+.+|..++.+..
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 44455555555554556667777776 99999999987666778999999999999988543
No 406
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=1.4e+03 Score=27.71 Aligned_cols=302 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCccHHHHHHhhHHHHHHHhC----------ChhHHHHHHHHHHHhhC--CC-cchHHHHHcCcHHHHHH
Q 002999 344 MAFLVGKLTLTNSCKEHIARQCAKVLVELLS----------KPAGRAASLKALYNLSG--LD-DNATILVDSALLPALTD 410 (859)
Q Consensus 344 aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~----------~~~~~~~a~~aL~~Ls~--~~-~~~~~i~~~G~i~~Lv~ 410 (859)
+|..-.-.......++.--++.++.++..|. ++...+-|++.+.++.. .. .-..-+.+.-+++.++.
T Consensus 388 laal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P 467 (970)
T COG5656 388 LAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIP 467 (970)
T ss_pred HHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhH
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhH
Q 002999 411 ILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAA 490 (859)
Q Consensus 411 lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~ 490 (859)
.+++ ...-++..|+..+..+ ...+.. ...-..+.+....++.+.+-.++..|+.||.-+-.+...+
T Consensus 468 ~f~s---~ygfL~Srace~is~~---eeDfkd--------~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h 533 (970)
T COG5656 468 AFRS---NYGFLKSRACEFISTI---EEDFKD--------NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSH 533 (970)
T ss_pred hhcC---cccchHHHHHHHHHHH---HHhccc--------chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhh
Q ss_pred HHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCC---CchHHHHHhhccCCC----chhHH
Q 002999 491 ESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPF---DKLVLFKDKILDNQS----ANCER 563 (859)
Q Consensus 491 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~---g~i~~Lv~lL~~~~~----~~~~~ 563 (859)
..+..++. +-++.|+.+-+.-+.++.......+..=-.+.-......+..+ ..+..-..++..+++ +++.+
T Consensus 534 ~k~sahVp--~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKq 611 (970)
T COG5656 534 EKFSAHVP--ETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQ 611 (970)
T ss_pred HHHHhhhh--HHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHH
Q ss_pred HHHHHHHHHhc------CCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHH
Q 002999 564 SDAACILANIQ------LSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMV 637 (859)
Q Consensus 564 ~~A~~~L~~L~------~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i 637 (859)
.+|.|+|..+. .+.+.+-.-++....|.+-=.|.+ ...+.-..++..+-++|.. -.++-..+
T Consensus 612 maasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn-----------~i~dfy~Ea~dildg~tf~-skeI~pim 679 (970)
T COG5656 612 MAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKN-----------EISDFYQEALDILDGYTFM-SKEIEPIM 679 (970)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhhhHH-HHHhhhhh
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhccc
Q 002999 638 REQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRS 675 (859)
Q Consensus 638 ~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~ 675 (859)
= |+...+.+++.+.++..--..++-+|.|+...+.+
T Consensus 680 w--gi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 680 W--GIFELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred h--HHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
No 407
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.13 E-value=1.4e+02 Score=33.68 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHH
Q 002999 261 VKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNV 340 (859)
Q Consensus 261 ~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~ 340 (859)
+..+..-..++.++..++....+|..++.... ++ ..+.+.++..+..++.......+++..-.+.|-=..+....+++
T Consensus 226 ~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ie-S~-~hvVek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~l~~~~I 303 (763)
T KOG4231|consen 226 ASTFVKKMEDEGNRSVIGKDENAIRQLISMIE-SD-QHVVEKACVALSSLARDVGVTMQLMKCDLMKPTETVLKLSSPDI 303 (763)
T ss_pred HHHHHHHhhCcccceeecccchhhhhhccccc-cc-chhhcccccccccHHHHHHHHHHHHHHHhcCcchhhhhhccccH
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhc-cCCCC
Q 002999 341 QIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFK-SHDAS 419 (859)
Q Consensus 341 ~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~ 419 (859)
. ..+-.+-..+...+..-+.-.-.....++++ ..+.+
T Consensus 304 ~------------------------------------------~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n 341 (763)
T KOG4231|consen 304 I------------------------------------------SLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKN 341 (763)
T ss_pred h------------------------------------------hHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccC
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002999 420 PELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGI 483 (859)
Q Consensus 420 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~L 483 (859)
+.++++|..++.|++-+.++++. .+.++..-..+++++....+++-+.+..++..+
T Consensus 342 ~~l~~qa~~~v~~~~~~~~~r~~--------~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 342 PELQRQALLAVGNLAFCLENRRI--------LITSPSLRELLMRLIVTPEPRVNKAAARALAIL 397 (763)
T ss_pred hHHHHHHHHHHHHheeccccccc--------ccCChHHHHHHHHHhcccccccchhhhHHHHHh
No 408
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.05 E-value=1.8e+02 Score=26.01 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.4
Q ss_pred hCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHh
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSV 277 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 277 (859)
.-+|+.|+.-|...++++...|..+|.+.+.++...+.+
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~ 45 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYL 45 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHH
Confidence 346899999999999999999999999998887544444
No 409
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=22.57 E-value=1.8e+02 Score=28.25 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=30.4
Q ss_pred cccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcch-hhhHhHHHHHH
Q 002999 76 NFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPN-IGLAGAIEEWV 145 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn-~~l~~~I~~w~ 145 (859)
.|.||.|.. ..||+..+ .. .++||.|+..|...+-.+- ..+.+.|+...
T Consensus 113 ~y~C~~~~~----------r~sfdeA~-----~~------~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~ 162 (176)
T COG1675 113 YYVCPNCHV----------KYSFDEAM-----EL------GFTCPKCGEDLEEYDSSEEIEELESELDELE 162 (176)
T ss_pred ceeCCCCCC----------cccHHHHH-----Hh------CCCCCCCCchhhhccchHHHHHHHHHHHHHH
Confidence 499998764 23566554 33 4799999999876555442 23444444443
No 410
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.36 E-value=1e+03 Score=25.77 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=104.0
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhcCCCcc---HHHHHHh--hHHHHHHHhC-------C--------hhHHHHHHHH
Q 002999 326 FEPLINRLCQGSDNVQIEMAFLVGKLTLTNSC---KEHIARQ--CAKVLVELLS-------K--------PAGRAASLKA 385 (859)
Q Consensus 326 i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~---~~~i~~~--gi~~Lv~lL~-------~--------~~~~~~a~~a 385 (859)
++.+...|..........+.+.|..++.-+.. ++.+..- ..+.+.+++. + +.+|.+...-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 66777888877777778888888888874432 3333332 2466777765 1 1778887776
Q ss_pred HHHhhCCC--cchHHHHH-cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHH
Q 002999 386 LYNLSGLD--DNATILVD-SALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLL 462 (859)
Q Consensus 386 L~~Ls~~~--~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll 462 (859)
+..+.... ..+..+.+ .+.+..+.+-|.. ++.++....+.+|..=...+...... -...+..+..+..|.
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~---D~~~~v~~iL~~l~~~Vl~~~~v~r~----~K~~~fn~~~L~~l~ 210 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRK---DPPETVILILETLKDKVLKDSSVSRS----TKCKLFNEWTLSQLA 210 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccC---CCHHHHHHHHHHHHHHhccCCCCChh----hhhhhcCHHHHHHHH
Confidence 66665543 34555555 5667777777743 56788888888888533333332211 112467788899999
Q ss_pred HhhcCCCh----HHHHHHHHHHHHhccCCh
Q 002999 463 GLLSGVSP----QCQVSTLRILCGIASSPQ 488 (859)
Q Consensus 463 ~LL~~~~~----~~~~~a~~aL~~La~~~~ 488 (859)
.+....++ .+.+.+-..|..+|.++.
T Consensus 211 ~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 211 SLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 98877766 788888888999888764
No 411
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=22.12 E-value=1.2e+03 Score=26.60 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC------hhHHHHHHHHHHHHhhhccHHHHHhcCCCC
Q 002999 471 QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE------VEHRTYAFRLTRILSERIGQDLAYALKPFD 544 (859)
Q Consensus 471 ~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~------~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g 544 (859)
++...+-.++.||+.+..... .+..|..+|..++ ..+-+.|+..+..+.-..++.....+.-+-
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~----------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~ 299 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHS----------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSP 299 (464)
T ss_pred ccchhHHHHHHHHHcCccHHH----------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccH
Confidence 566667778888887654321 3567777773222 234467777777765222122222233323
Q ss_pred --chHHHHHhhccCCCchhHHHHHHHHHHHhc
Q 002999 545 --KLVLFKDKILDNQSANCERSDAACILANIQ 574 (859)
Q Consensus 545 --~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 574 (859)
.++.|...++.++. -+-......+.++-
T Consensus 300 ~~vl~sl~~al~~~~~--~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 300 SSVLPSLLNALKSNSP--RVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHHhCCCC--eehHHHHHHHHHHH
Confidence 67788888887665 33333444444443
No 412
>PLN02189 cellulose synthase
Probab=21.81 E-value=63 Score=39.99 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=35.9
Q ss_pred cccCcccccc-----cCCCeec--CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 76 NFLCPLTKQV-----MKEPVVL--ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 76 ~~~cpi~~~~-----m~dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
.-.|+||++- +-+|.+. .||.-.||.|.|-=.++ | +..||.|+...+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~e----g-~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE----G-TQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc----C-CccCcccCCchh
Confidence 3579999985 4467766 58899999999644443 5 789999988775
No 413
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=21.68 E-value=1.4e+02 Score=31.73 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=48.5
Q ss_pred hcCCchHHHhhhccCChhHHHHHHHHHHhhhhcc-Cc---------chhhHHHHHHhcCChHHHHHHhhh
Q 002999 724 KSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDT-SK---------NFKRGVDELEREGALDAVVDLFTE 783 (859)
Q Consensus 724 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~-~~---------~~~~~~~~i~~~g~i~~L~~ll~~ 783 (859)
+...|..+++-|++.+...+..|+.+|..+++-. ++ .+.+++..+.++||+++|.++|..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4556889999999999999999999999999731 00 025567889999999999999874
No 414
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=21.34 E-value=3.7e+02 Score=28.44 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=43.6
Q ss_pred HHHHHHHhC--ChhHHHHHHHHHHHhhCCCcch--HHHHHcCcHHHHHHHHhcc---------CCCCHHHHHHHHHHHHH
Q 002999 366 AKVLVELLS--KPAGRAASLKALYNLSGLDDNA--TILVDSALLPALTDILFKS---------HDASPELKELAAATIAN 432 (859)
Q Consensus 366 i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~--~~i~~~G~i~~Lv~lL~~~---------~~~~~~~~~~a~~~L~n 432 (859)
+|+++.+++ ++..|..++.+|..+....... ..+.+.|..+.+-+.+... .+....+...+..+|..
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 477777777 6777778888888876654332 2456677666665555430 12344566677777777
Q ss_pred hhc
Q 002999 433 VVS 435 (859)
Q Consensus 433 L~~ 435 (859)
|+.
T Consensus 201 L~~ 203 (282)
T PF10521_consen 201 LLK 203 (282)
T ss_pred HHH
Confidence 654
No 415
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=20.97 E-value=37 Score=24.79 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=22.3
Q ss_pred ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 91 VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 91 ~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+..+.|-.|..|+...+.. ...||+|..+|.
T Consensus 16 i~C~dHYLCl~CLt~ml~~------s~~C~iC~~~LP 46 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSR------SDRCPICGKPLP 46 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SS------SSEETTTTEE--
T ss_pred eeecchhHHHHHHHHHhcc------ccCCCcccCcCc
Confidence 4456799999999999876 689999998874
No 416
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=20.13 E-value=3.6e+02 Score=29.24 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhC--chHHHHHHhcCCC---HHHHHHHHHHHHHhccChh----hhhHhh--hhhC
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEG--VTKSVIHSLIGNS---EKEKEYAVKLLLEFCIDEA----YCKSVA--SEKG 282 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g--~i~~Lv~lL~~~~---~~~~~~A~~~L~~Ls~~~~----~~~~i~--~~~g 282 (859)
.+|..|+..|..+..++..-..+...+ .+..|+++++.++ ..++..|+.+|..++.+.. ....++ ..+|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 567777777777776766666666655 9999999998754 5788899999999988643 222222 2355
Q ss_pred hHHHHHH
Q 002999 283 ALVLLSS 289 (859)
Q Consensus 283 ~i~~Lv~ 289 (859)
.++.+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 5555554
Done!