Query 002999
Match_columns 859
No_of_seqs 513 out of 3422
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 09:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdh_A Beta-catenin; beta-cate 100.0 6.1E-42 2.1E-46 399.4 42.7 504 191-800 13-528 (529)
2 2z6h_A Catenin beta-1, beta-ca 100.0 2.6E-41 9E-46 402.9 44.4 508 191-846 10-529 (644)
3 3now_A UNC-45 protein, SD10334 100.0 7.3E-42 2.5E-46 402.8 37.3 470 168-756 263-783 (810)
4 2z6g_A B-catenin; FULL-length, 100.0 1.2E-40 4.1E-45 403.4 48.7 539 152-805 116-666 (780)
5 2z6g_A B-catenin; FULL-length, 100.0 3.2E-41 1.1E-45 408.3 41.5 543 195-847 115-666 (780)
6 3now_A UNC-45 protein, SD10334 100.0 9.5E-41 3.2E-45 393.3 44.1 543 191-804 189-784 (810)
7 1jdh_A Beta-catenin; beta-cate 100.0 1E-40 3.6E-45 389.0 39.0 490 236-843 13-529 (529)
8 2z6h_A Catenin beta-1, beta-ca 100.0 4.8E-39 1.7E-43 383.4 37.0 532 152-796 15-559 (644)
9 3ul1_B Importin subunit alpha- 100.0 4.5E-38 1.5E-42 363.6 39.5 412 281-804 56-480 (510)
10 3tpo_A Importin subunit alpha- 100.0 3.9E-37 1.3E-41 357.8 40.0 412 281-804 75-499 (529)
11 3l6x_A Catenin delta-1; cateni 100.0 2.1E-35 7.3E-40 337.1 36.1 389 238-642 46-489 (584)
12 3l6x_A Catenin delta-1; cateni 100.0 2.1E-35 7.2E-40 337.1 33.4 377 193-587 46-488 (584)
13 1xm9_A Plakophilin 1; armadill 100.0 1.5E-34 5.2E-39 329.0 33.5 375 241-673 3-451 (457)
14 4b8j_A Importin subunit alpha- 100.0 1.1E-33 3.7E-38 329.6 41.1 408 282-804 74-498 (528)
15 3ul1_B Importin subunit alpha- 100.0 1.2E-33 4E-38 326.6 36.5 406 196-671 58-478 (510)
16 1wa5_B Importin alpha subunit; 100.0 4.4E-33 1.5E-37 324.5 41.2 413 281-806 86-514 (530)
17 1xm9_A Plakophilin 1; armadill 100.0 8.1E-34 2.8E-38 323.0 30.9 362 196-576 3-450 (457)
18 3tpo_A Importin subunit alpha- 100.0 5.5E-33 1.9E-37 322.9 37.6 407 195-671 76-497 (529)
19 3nmz_A APC variant protein; pr 100.0 3.1E-34 1E-38 321.0 25.6 358 196-577 33-452 (458)
20 3nmz_A APC variant protein; pr 100.0 7.2E-34 2.5E-38 318.0 24.8 362 153-532 34-452 (458)
21 2jdq_A Importin alpha-1 subuni 100.0 9.8E-32 3.3E-36 306.3 39.7 408 283-805 21-446 (450)
22 4b8j_A Importin subunit alpha- 100.0 8.6E-32 2.9E-36 313.6 38.6 405 152-577 75-498 (528)
23 1wa5_B Importin alpha subunit; 100.0 5.9E-31 2E-35 306.5 38.8 414 194-672 86-511 (530)
24 2jdq_A Importin alpha-1 subuni 100.0 3.6E-30 1.2E-34 293.3 35.0 411 196-672 21-444 (450)
25 3nmw_A APC variant protein; AR 100.0 4.1E-29 1.4E-33 271.7 21.3 263 214-488 47-337 (354)
26 3nmw_A APC variant protein; AR 100.0 1.5E-28 5.2E-33 267.2 23.3 269 168-441 47-340 (354)
27 3opb_A SWI5-dependent HO expre 99.9 9.3E-26 3.2E-30 260.3 29.7 451 173-653 276-759 (778)
28 3opb_A SWI5-dependent HO expre 99.9 1.8E-25 6.2E-30 257.9 29.0 377 172-566 313-768 (778)
29 4hxt_A De novo protein OR329; 99.9 5.8E-23 2E-27 214.1 24.9 238 195-441 2-247 (252)
30 4hxt_A De novo protein OR329; 99.9 2.1E-22 7.2E-27 209.8 23.8 234 282-530 2-241 (252)
31 4db8_A Armadillo-repeat protei 99.9 1.5E-22 5.1E-27 211.3 22.4 233 195-436 12-252 (252)
32 4db8_A Armadillo-repeat protei 99.9 3.1E-22 1.1E-26 208.9 20.6 234 240-486 12-252 (252)
33 3tt9_A Plakophilin-2; cell adh 99.9 4.3E-22 1.5E-26 201.4 18.4 194 241-436 9-230 (233)
34 3tt9_A Plakophilin-2; cell adh 99.9 8.5E-22 2.9E-26 199.2 16.0 197 151-353 8-229 (233)
35 1b3u_A Protein (protein phosph 99.8 6.1E-18 2.1E-22 199.0 37.8 574 152-843 11-586 (588)
36 4db6_A Armadillo repeat protei 99.8 5E-19 1.7E-23 179.0 21.7 193 239-436 11-210 (210)
37 4db6_A Armadillo repeat protei 99.8 2.7E-19 9.3E-24 181.0 19.7 194 193-392 10-210 (210)
38 2kr4_A Ubiquitin conjugation f 99.8 7.3E-21 2.5E-25 160.5 6.1 75 67-149 7-81 (85)
39 2kre_A Ubiquitin conjugation f 99.8 8.4E-21 2.9E-25 164.9 6.2 71 74-150 27-97 (100)
40 1b3u_A Protein (protein phosph 99.8 3.1E-17 1.1E-21 192.9 37.9 536 197-845 12-549 (588)
41 1wgm_A Ubiquitin conjugation f 99.8 2.4E-20 8.1E-25 161.3 6.7 71 73-149 19-90 (98)
42 4fdd_A Transportin-1; heat rep 99.8 1.8E-16 6E-21 195.1 43.4 591 169-845 106-785 (852)
43 4fdd_A Transportin-1; heat rep 99.8 7.6E-17 2.6E-21 198.4 37.5 616 131-845 23-700 (852)
44 1xqr_A HSPBP1 protein; armadil 99.8 3E-18 1E-22 181.1 18.2 177 172-355 59-240 (296)
45 1xqr_A HSPBP1 protein; armadil 99.8 1.1E-17 3.8E-22 176.8 21.2 221 214-436 55-288 (296)
46 2f42_A STIP1 homology and U-bo 99.8 3.2E-19 1.1E-23 170.0 6.2 72 73-149 103-174 (179)
47 2yu4_A E3 SUMO-protein ligase 99.7 5.5E-18 1.9E-22 146.1 5.2 75 75-149 6-84 (94)
48 3m62_A Ubiquitin conjugation f 99.7 4.1E-18 1.4E-22 198.4 4.8 125 13-149 833-959 (968)
49 1qgr_A Protein (importin beta 99.7 1.1E-13 3.7E-18 170.9 41.1 615 152-849 129-876 (876)
50 3grl_A General vesicular trans 99.7 1.3E-13 4.4E-18 155.3 37.5 437 151-598 21-528 (651)
51 2vgl_B AP-2 complex subunit be 99.7 1.5E-14 5.2E-19 169.7 30.8 367 239-672 12-383 (591)
52 2bpt_A Importin beta-1 subunit 99.7 1.6E-13 5.3E-18 169.1 39.0 603 153-845 136-812 (861)
53 1t1h_A Gspef-atpub14, armadill 99.6 1.1E-16 3.6E-21 133.6 6.5 72 73-149 5-76 (78)
54 2bpt_A Importin beta-1 subunit 99.6 2.8E-13 9.7E-18 166.8 39.6 614 132-845 16-712 (861)
55 2bay_A PRE-mRNA splicing facto 99.6 1.2E-16 4.1E-21 124.4 2.1 55 76-136 3-58 (61)
56 3grl_A General vesicular trans 99.6 2.9E-13 1E-17 152.4 30.1 410 152-571 61-546 (651)
57 1qgr_A Protein (importin beta 99.6 2.8E-12 9.5E-17 158.2 41.3 624 132-844 12-722 (876)
58 2vgl_B AP-2 complex subunit be 99.6 1.8E-12 6.1E-17 152.1 37.2 507 195-844 13-532 (591)
59 2c2l_A CHIP, carboxy terminus 99.6 2.9E-16 9.8E-21 166.5 4.3 73 72-149 204-276 (281)
60 1u6g_C TIP120 protein, CAND1; 99.6 1.2E-12 4.2E-17 167.3 34.9 604 152-847 7-682 (1230)
61 3htk_C E3 SUMO-protein ligase 99.5 2.5E-14 8.6E-19 142.2 5.9 79 66-148 171-252 (267)
62 1oyz_A Hypothetical protein YI 99.4 2.8E-11 9.6E-16 127.8 27.7 256 237-571 20-278 (280)
63 1w63_A Adapter-related protein 99.4 3E-10 1E-14 133.6 38.6 479 240-846 70-579 (618)
64 3ztg_A E3 ubiquitin-protein li 99.4 1.4E-13 4.8E-18 118.6 7.3 73 73-149 10-84 (92)
65 1w63_A Adapter-related protein 99.4 2.4E-10 8.1E-15 134.5 37.3 534 135-801 10-576 (618)
66 1oyz_A Hypothetical protein YI 99.4 6.7E-11 2.3E-15 124.9 25.9 259 320-668 19-279 (280)
67 1u6g_C TIP120 protein, CAND1; 99.4 3.3E-10 1.1E-14 144.8 36.4 557 197-844 8-637 (1230)
68 3ltm_A Alpha-REP4; protein eng 99.3 2.3E-10 7.9E-15 115.2 20.2 190 500-848 18-207 (211)
69 3fl2_A E3 ubiquitin-protein li 99.2 4.7E-12 1.6E-16 115.6 5.6 68 75-147 51-119 (124)
70 2y43_A E3 ubiquitin-protein li 99.2 6.1E-12 2.1E-16 109.8 4.2 69 75-149 21-90 (99)
71 3ltm_A Alpha-REP4; protein eng 99.2 9.2E-10 3.2E-14 110.7 20.6 188 194-439 18-207 (211)
72 1z6u_A NP95-like ring finger p 99.2 1E-11 3.5E-16 116.6 5.6 68 75-147 77-145 (150)
73 1ibr_B P95, importin beta-1 su 99.2 2.9E-09 9.9E-14 120.6 26.5 383 294-756 12-438 (462)
74 1ibr_B P95, importin beta-1 su 99.1 1.8E-09 6.3E-14 122.2 22.1 381 165-575 13-437 (462)
75 3ltj_A Alpharep-4; protein eng 99.1 2.2E-09 7.5E-14 107.0 19.3 182 195-434 14-197 (201)
76 3ltj_A Alpharep-4; protein eng 99.1 4.5E-09 1.5E-13 104.7 20.3 183 239-484 13-197 (201)
77 2ckl_A Polycomb group ring fin 99.1 3.9E-11 1.3E-15 106.5 4.5 67 75-147 14-85 (108)
78 3lrq_A E3 ubiquitin-protein li 99.1 4.7E-11 1.6E-15 104.1 4.5 68 75-147 21-89 (100)
79 2ecw_A Tripartite motif-contai 99.1 3.2E-11 1.1E-15 102.1 3.3 67 75-141 18-84 (85)
80 2vgl_A Adaptor protein complex 99.1 1.9E-07 6.4E-12 109.5 35.9 530 136-800 12-587 (621)
81 2csy_A Zinc finger protein 183 99.1 4.8E-11 1.7E-15 99.8 3.8 58 75-139 14-71 (81)
82 2ecv_A Tripartite motif-contai 99.1 3.9E-11 1.3E-15 101.5 2.5 67 75-141 18-84 (85)
83 1jm7_A BRCA1, breast cancer ty 99.0 9.6E-11 3.3E-15 104.9 4.7 70 75-147 20-89 (112)
84 2egp_A Tripartite motif-contai 99.0 1.8E-11 6E-16 102.1 -0.9 67 75-141 11-78 (79)
85 4ayc_A E3 ubiquitin-protein li 99.0 7.5E-11 2.6E-15 109.5 3.2 63 75-145 52-114 (138)
86 3hct_A TNF receptor-associated 99.0 1.2E-10 4.2E-15 104.9 3.5 70 72-146 14-83 (118)
87 2yur_A Retinoblastoma-binding 99.0 2.3E-10 7.9E-15 93.6 4.8 57 74-134 13-71 (74)
88 1jm7_B BARD1, BRCA1-associated 99.0 6.6E-11 2.3E-15 106.5 1.7 66 75-148 21-87 (117)
89 2vgl_A Adaptor protein complex 99.0 5.1E-07 1.7E-11 105.8 35.2 365 242-672 37-434 (621)
90 2djb_A Polycomb group ring fin 99.0 2.8E-10 9.5E-15 92.7 5.2 55 75-135 14-69 (72)
91 3l11_A E3 ubiquitin-protein li 99.0 6.3E-11 2.2E-15 106.5 0.9 71 72-147 11-88 (115)
92 2ckl_B Ubiquitin ligase protei 99.0 2.5E-10 8.6E-15 109.7 3.8 69 75-148 53-123 (165)
93 2ecy_A TNF receptor-associated 99.0 6E-10 2.1E-14 88.9 5.3 54 73-131 12-65 (66)
94 2ysl_A Tripartite motif-contai 98.9 1.4E-09 4.7E-14 88.9 4.7 55 74-131 18-72 (73)
95 3ng2_A RNF4, snurf, ring finge 98.9 9.7E-10 3.3E-14 89.3 3.5 57 73-135 7-70 (71)
96 1g25_A CDK-activating kinase a 98.8 1.6E-09 5.3E-14 86.2 3.8 55 75-134 2-61 (65)
97 3knv_A TNF receptor-associated 98.8 5.6E-10 1.9E-14 103.4 1.3 67 72-143 27-102 (141)
98 1rmd_A RAG1; V(D)J recombinati 98.8 1.9E-09 6.4E-14 96.9 4.0 65 75-144 22-87 (116)
99 2ysj_A Tripartite motif-contai 98.8 3.7E-09 1.3E-13 83.5 5.1 45 75-122 19-63 (63)
100 3hcs_A TNF receptor-associated 98.8 1.6E-09 5.6E-14 104.6 3.6 69 72-145 14-82 (170)
101 2d8t_A Dactylidin, ring finger 98.8 2E-09 6.7E-14 87.3 2.6 51 72-128 11-61 (71)
102 2xeu_A Ring finger protein 4; 98.7 2.3E-09 7.9E-14 85.0 2.2 54 75-134 2-62 (64)
103 4gmo_A Putative uncharacterize 98.7 5.2E-08 1.8E-12 115.7 12.1 213 197-414 36-287 (684)
104 4gmo_A Putative uncharacterize 98.7 5E-08 1.7E-12 115.8 11.7 193 240-435 34-258 (684)
105 2ct2_A Tripartite motif protei 98.7 1.7E-08 5.7E-13 85.8 4.9 60 75-137 14-80 (88)
106 2ecj_A Tripartite motif-contai 98.6 2.2E-08 7.6E-13 77.4 4.1 45 75-122 14-58 (58)
107 2ea6_A Ring finger protein 4; 98.6 1.6E-08 5.5E-13 81.4 3.2 47 75-127 14-67 (69)
108 2ect_A Ring finger protein 126 98.6 1.8E-08 6.3E-13 83.3 2.9 55 75-135 14-71 (78)
109 1chc_A Equine herpes virus-1 r 98.5 6.3E-08 2.2E-12 77.6 3.6 47 76-128 5-52 (68)
110 1e4u_A Transcriptional repress 98.4 1.1E-07 3.7E-12 77.9 4.1 52 75-131 10-65 (78)
111 2ecm_A Ring finger and CHY zin 98.4 1E-07 3.5E-12 72.7 3.4 47 75-127 4-54 (55)
112 4ap4_A E3 ubiquitin ligase RNF 98.4 6.4E-08 2.2E-12 89.3 2.1 54 75-134 6-66 (133)
113 1bor_A Transcription factor PM 98.4 5.8E-08 2E-12 74.2 1.1 45 75-128 5-49 (56)
114 2ep4_A Ring finger protein 24; 98.4 3E-07 1E-11 75.0 5.2 49 75-129 14-65 (74)
115 2ecn_A Ring finger protein 141 98.4 6.2E-08 2.1E-12 78.2 0.9 49 75-130 14-62 (70)
116 2kiz_A E3 ubiquitin-protein li 98.4 4.1E-07 1.4E-11 73.0 5.3 48 75-128 13-63 (69)
117 2l0b_A E3 ubiquitin-protein li 98.3 2.1E-07 7.2E-12 79.2 3.5 47 75-127 39-88 (91)
118 1x4j_A Ring finger protein 38; 98.3 2.3E-07 8E-12 75.8 3.1 48 75-128 22-72 (75)
119 1te4_A Conserved protein MTH18 98.3 1.8E-07 6E-12 86.1 2.4 89 727-842 43-131 (131)
120 1iym_A EL5; ring-H2 finger, ub 98.3 2E-07 7E-12 71.0 2.3 46 75-126 4-53 (55)
121 4ady_A RPN2, 26S proteasome re 98.3 0.00024 8.1E-09 84.4 28.5 253 214-529 410-675 (963)
122 1v87_A Deltex protein 2; ring- 98.2 1E-06 3.6E-11 78.6 4.1 52 76-128 25-94 (114)
123 1ho8_A Vacuolar ATP synthase s 98.1 0.0003 1E-08 76.8 23.5 321 193-529 75-475 (480)
124 2y1n_A E3 ubiquitin-protein li 98.1 7.5E-07 2.6E-11 95.0 3.0 49 76-129 332-380 (389)
125 1wim_A KIAA0161 protein; ring 98.1 6E-07 2.1E-11 77.0 1.3 71 75-146 4-83 (94)
126 4ady_A RPN2, 26S proteasome re 98.1 0.00052 1.8E-08 81.5 26.4 270 241-576 393-677 (963)
127 2vje_A E3 ubiquitin-protein li 98.1 1.7E-06 5.7E-11 68.0 3.2 51 71-127 3-56 (64)
128 4ic3_A E3 ubiquitin-protein li 98.1 7.1E-07 2.4E-11 72.5 1.0 44 75-128 23-67 (74)
129 4ap4_A E3 ubiquitin ligase RNF 98.1 8E-07 2.7E-11 81.8 1.4 55 75-135 71-132 (133)
130 3b2a_A TON_1937, putative unch 98.0 0.00027 9.4E-09 68.8 18.4 186 281-487 32-220 (265)
131 3tjz_B Coatomer subunit gamma; 98.0 0.00036 1.2E-08 74.6 21.2 299 379-793 45-344 (355)
132 1te4_A Conserved protein MTH18 98.0 1.3E-06 4.4E-11 80.2 1.8 121 194-351 11-131 (131)
133 3b2a_A TON_1937, putative unch 98.0 0.00042 1.4E-08 67.5 19.0 184 239-437 32-220 (265)
134 3tjz_B Coatomer subunit gamma; 98.0 0.00016 5.4E-09 77.3 17.5 276 241-568 69-346 (355)
135 1ho8_A Vacuolar ATP synthase s 98.0 0.0011 3.9E-08 72.3 23.8 266 461-802 172-476 (480)
136 2ecg_A Baculoviral IAP repeat- 97.9 3.8E-06 1.3E-10 68.4 2.9 44 75-128 24-68 (75)
137 2ecl_A Ring-box protein 2; RNF 97.9 4.1E-06 1.4E-10 69.4 3.0 46 76-127 15-75 (81)
138 2vje_B MDM4 protein; proto-onc 97.9 6.4E-06 2.2E-10 64.4 2.8 46 76-127 7-55 (63)
139 2qk2_A LP04448P; mini spindles 97.8 0.00014 5E-09 74.1 12.1 184 328-535 19-210 (242)
140 2qk2_A LP04448P; mini spindles 97.7 0.00046 1.6E-08 70.3 15.6 181 243-436 18-206 (242)
141 3dpl_R Ring-box protein 1; ubi 97.7 1.9E-05 6.6E-10 68.6 4.1 45 76-126 37-99 (106)
142 1wa5_C Importin alpha RE-expor 97.6 0.026 8.8E-07 69.7 31.8 405 131-575 15-525 (960)
143 1wa5_C Importin alpha RE-expor 97.6 0.27 9.4E-06 60.4 48.7 540 195-845 35-671 (960)
144 2db0_A 253AA long hypothetical 97.6 0.0077 2.6E-07 56.2 19.3 217 400-755 29-246 (253)
145 2db0_A 253AA long hypothetical 97.5 0.0088 3E-07 55.8 18.1 184 365-584 33-219 (253)
146 2yho_A E3 ubiquitin-protein li 97.5 2.1E-05 7E-10 64.6 0.6 43 76-128 18-61 (79)
147 2iw3_A Elongation factor 3A; a 97.4 0.019 6.4E-07 69.2 25.2 296 244-573 18-322 (986)
148 2x1g_F Cadmus; transport prote 97.4 0.11 3.7E-06 64.2 33.3 534 214-845 22-664 (971)
149 2ea5_A Cell growth regulator w 97.4 0.00012 4E-09 58.1 4.1 44 75-128 14-58 (68)
150 3t6p_A Baculoviral IAP repeat- 97.4 2.2E-05 7.5E-10 83.5 -0.2 44 75-128 294-338 (345)
151 2d8s_A Cellular modulator of i 97.3 0.00014 4.9E-09 59.5 4.1 55 75-133 14-76 (80)
152 3dad_A FH1/FH2 domain-containi 97.3 0.0085 2.9E-07 62.3 18.0 150 198-352 121-285 (339)
153 2qk1_A Protein STU2; STU2P, XM 97.3 0.0027 9.2E-08 64.8 13.8 181 375-575 29-220 (249)
154 2x19_B Importin-13; nuclear tr 97.2 0.14 4.9E-06 63.0 31.6 524 214-842 40-644 (963)
155 4a0k_B E3 ubiquitin-protein li 97.2 4.9E-05 1.7E-09 66.9 0.0 44 77-126 49-110 (117)
156 2x1g_F Cadmus; transport prote 97.2 0.58 2E-05 57.6 36.4 420 214-672 204-723 (971)
157 2qk1_A Protein STU2; STU2P, XM 97.1 0.0035 1.2E-07 63.9 12.5 186 245-435 21-220 (249)
158 2x19_B Importin-13; nuclear tr 97.0 1.2 4E-05 54.7 41.8 498 249-844 34-599 (963)
159 2iw3_A Elongation factor 3A; a 97.0 0.032 1.1E-06 67.2 20.9 296 153-483 16-322 (986)
160 3dad_A FH1/FH2 domain-containi 96.9 0.023 7.9E-07 59.0 16.8 155 152-312 119-286 (339)
161 3m1i_C Exportin-1; heat repeat 96.4 2.2 7.6E-05 52.9 33.1 205 136-354 31-264 (1049)
162 3ibv_A Exportin-T; karyopherin 96.3 3.4 0.00012 50.6 35.8 298 214-530 208-566 (980)
163 4hat_C Exportin-1; heat repeat 96.0 4.5 0.00015 49.6 35.2 217 241-485 17-263 (1023)
164 1lrv_A LRV, leucine-rich repea 95.8 0.023 7.7E-07 57.4 8.8 68 730-839 174-241 (244)
165 1lrv_A LRV, leucine-rich repea 95.8 0.02 6.7E-07 57.8 8.0 83 463-568 57-144 (244)
166 3i2d_A E3 SUMO-protein ligase 95.6 0.012 4.1E-07 61.9 5.9 64 75-142 248-314 (371)
167 1vyx_A ORF K3, K3RING; zinc-bi 95.3 0.014 4.9E-07 44.5 4.0 47 77-127 7-58 (60)
168 2fv2_A RCD1 required for cell 95.1 0.83 2.9E-05 45.3 16.6 179 168-351 71-266 (268)
169 2fv2_A RCD1 required for cell 95.0 0.32 1.1E-05 48.2 13.3 181 474-669 74-266 (268)
170 3m1i_C Exportin-1; heat repeat 94.6 12 0.00042 46.1 42.1 200 214-436 31-264 (1049)
171 2ct0_A Non-SMC element 1 homol 94.5 0.032 1.1E-06 44.4 3.9 47 77-127 16-63 (74)
172 3vk6_A E3 ubiquitin-protein li 94.3 0.019 6.5E-07 47.7 2.4 46 78-128 3-49 (101)
173 3ibv_A Exportin-T; karyopherin 94.3 13 0.00045 45.3 34.2 470 253-802 21-566 (980)
174 3ebb_A Phospholipase A2-activa 93.8 1.3 4.4E-05 46.0 15.8 120 214-333 163-284 (304)
175 3k1l_B Fancl; UBC, ring, RWD, 93.7 0.029 9.8E-07 57.9 2.8 51 77-127 309-372 (381)
176 4fo9_A E3 SUMO-protein ligase 93.3 0.047 1.6E-06 57.2 3.6 63 76-142 215-280 (360)
177 4ffb_C Protein STU2; tubulin f 92.7 2.7 9.1E-05 43.0 16.4 183 200-392 14-213 (278)
178 3eg5_B Protein diaphanous homo 92.5 7.2 0.00025 41.8 19.7 191 152-374 67-274 (383)
179 3oc3_A Helicase MOT1, MOT1; re 92.3 3.9 0.00013 45.3 16.9 218 405-670 176-403 (800)
180 3ebb_A Phospholipase A2-activa 92.0 3 0.0001 43.2 15.3 171 258-430 120-301 (304)
181 4ffb_C Protein STU2; tubulin f 91.5 1.6 5.3E-05 44.8 12.8 144 197-352 57-211 (278)
182 1upk_A MO25 protein; transfera 90.9 11 0.00039 38.9 17.9 194 191-393 74-285 (341)
183 2of3_A ZYG-9; multifunctional 90.3 5.3 0.00018 40.3 14.8 140 375-540 100-246 (266)
184 2jun_A Midline-1; B-BOX, TRIM, 90.1 0.11 3.7E-06 44.4 1.9 34 75-108 2-38 (101)
185 3oc3_A Helicase MOT1, MOT1; re 89.5 6.5 0.00022 43.6 15.2 242 241-526 175-432 (800)
186 2f31_A Diaphanous protein homo 88.9 8.9 0.0003 37.9 15.2 169 173-343 21-218 (233)
187 2f31_A Diaphanous protein homo 88.3 7.7 0.00026 38.4 14.3 135 239-374 42-208 (233)
188 4hat_C Exportin-1; heat repeat 88.0 57 0.0019 39.9 38.5 211 198-436 19-264 (1023)
189 1upk_A MO25 protein; transfera 87.9 28 0.00094 36.1 21.7 229 318-556 72-313 (341)
190 2bnx_A Diaphanous protein homo 86.3 23 0.0008 37.9 17.6 190 153-374 6-212 (386)
191 3gjx_A Exportin-1; transport, 84.9 81 0.0028 38.6 27.9 213 197-437 30-277 (1073)
192 2of3_A ZYG-9; multifunctional 84.3 13 0.00045 37.4 13.4 131 417-574 98-235 (266)
193 3gjx_A Exportin-1; transport, 83.8 6.5 0.00022 48.2 13.1 219 240-486 28-276 (1073)
194 2kkx_A Uncharacterized protein 83.0 0.76 2.6E-05 37.8 3.0 51 75-131 26-82 (102)
195 3u0r_A Apoptosis inhibitor 5; 81.8 6.3 0.00022 42.9 10.4 120 654-840 40-159 (507)
196 1lsh_A Lipovitellin (LV-1N, LV 80.8 30 0.001 42.5 17.6 261 172-488 289-579 (1056)
197 3c2g_A SYS-1 protein; beta-cat 78.4 34 0.0012 35.3 13.7 116 217-334 261-377 (619)
198 3c2g_A SYS-1 protein; beta-cat 78.0 26 0.0009 36.1 12.8 127 307-433 266-401 (619)
199 3eg5_B Protein diaphanous homo 76.0 22 0.00075 38.0 12.7 137 377-518 135-282 (383)
200 3a6p_A Exportin-5; exportin-5, 69.4 70 0.0024 39.9 16.9 290 253-571 26-376 (1204)
201 3u0r_A Apoptosis inhibitor 5; 67.7 58 0.002 35.5 13.2 113 173-309 48-160 (507)
202 1lsh_A Lipovitellin (LV-1N, LV 66.1 2.4E+02 0.0083 34.4 20.5 203 281-530 355-576 (1056)
203 3a6p_A Exportin-5; exportin-5, 66.1 2.5E+02 0.0086 34.9 21.0 308 153-486 13-381 (1204)
204 3qml_C Protein SLS1, nucleotid 65.5 37 0.0013 34.6 10.6 79 242-322 24-110 (315)
205 3l9t_A Putative uncharacterize 64.3 59 0.002 31.9 11.5 130 199-356 75-210 (240)
206 2bay_A PRE-mRNA splicing facto 63.7 2.5 8.6E-05 32.0 1.3 35 116-150 3-40 (61)
207 3l9t_A Putative uncharacterize 60.0 89 0.003 30.6 11.9 134 242-394 73-210 (240)
208 3mjh_B Early endosome antigen 59.2 1.9 6.6E-05 28.2 -0.0 17 75-91 4-20 (34)
209 3nw0_A Non-structural maintena 58.1 8.2 0.00028 38.3 4.3 48 77-128 181-229 (238)
210 3ldz_A STAM-1, signal transduc 57.7 55 0.0019 29.2 9.4 88 173-269 25-114 (140)
211 3qml_C Protein SLS1, nucleotid 55.3 1.5E+02 0.0052 30.2 12.9 148 199-351 26-187 (315)
212 3g2s_A C-terminal fragment of 52.4 43 0.0015 30.3 7.8 73 502-574 49-125 (149)
213 1x5b_A Signal transducing adap 51.3 77 0.0026 29.1 9.5 70 196-269 53-125 (163)
214 1juq_A ADP-ribosylation factor 50.8 83 0.0029 29.1 9.8 88 173-269 33-128 (171)
215 3gs3_A Symplekin, LD45768P; he 49.8 2E+02 0.007 28.4 13.9 88 214-310 30-117 (257)
216 3o2t_A Symplekin; heat repeat, 49.2 1.5E+02 0.005 31.5 12.5 66 641-754 63-128 (386)
217 1x5b_A Signal transducing adap 48.2 36 0.0012 31.3 6.8 70 502-572 53-122 (163)
218 3s4w_B Protein FACD2, fanconi 47.9 1.7E+02 0.0058 36.3 14.3 227 283-529 193-466 (1323)
219 3g2s_A C-terminal fragment of 47.9 1.1E+02 0.0037 27.7 9.7 88 173-269 31-126 (149)
220 3gs3_A Symplekin, LD45768P; he 45.3 1.9E+02 0.0066 28.6 12.1 65 642-754 54-118 (257)
221 3zyq_A Hepatocyte growth facto 44.9 88 0.003 30.5 9.4 88 173-269 28-118 (226)
222 2bnx_A Diaphanous protein homo 44.6 1.2E+02 0.0042 32.2 11.3 127 168-300 73-220 (386)
223 3ldz_A STAM-1, signal transduc 43.9 36 0.0012 30.5 5.8 69 503-573 44-112 (140)
224 1mhq_A ADP-ribosylation factor 42.9 45 0.0015 30.1 6.4 72 502-573 39-114 (148)
225 1mhq_A ADP-ribosylation factor 42.9 1.2E+02 0.004 27.3 9.2 70 196-269 39-116 (148)
226 2jvx_A NF-kappa-B essential mo 39.5 8.2 0.00028 24.0 0.5 15 76-90 3-17 (28)
227 3zyq_A Hepatocyte growth facto 39.4 45 0.0015 32.6 6.3 72 502-574 46-117 (226)
228 1juq_A ADP-ribosylation factor 38.6 63 0.0022 30.0 6.8 73 502-574 51-127 (171)
229 1dvp_A HRS, hepatocyte growth 36.7 52 0.0018 32.0 6.2 68 503-571 44-111 (220)
230 2kre_A Ubiquitin conjugation f 34.6 25 0.00085 29.4 3.0 32 76-109 63-94 (100)
231 1weo_A Cellulose synthase, cat 33.2 71 0.0024 25.8 5.1 47 76-127 16-69 (93)
232 1dvp_A HRS, hepatocyte growth 32.0 2.1E+02 0.007 27.6 9.7 88 173-269 25-115 (220)
233 2yu4_A E3 SUMO-protein ligase 31.9 15 0.0005 30.4 1.1 33 116-148 7-42 (94)
234 3vhs_A ATPase wrnip1; zinc fin 30.8 12 0.00043 22.1 0.3 11 77-87 7-17 (29)
235 3gae_A Protein DOA1; UFD3, CDC 26.2 89 0.003 31.0 5.9 99 214-316 105-221 (253)
236 1elk_A Target of MYB1; superhe 24.6 3.5E+02 0.012 24.3 9.3 70 196-269 54-130 (157)
237 2cs3_A Protein C14ORF4, MY039 23.8 85 0.0029 24.7 3.9 47 75-122 14-64 (93)
238 2kr4_A Ubiquitin conjugation f 21.0 46 0.0016 26.7 2.2 32 77-110 49-80 (85)
239 1wgm_A Ubiquitin conjugation f 21.0 49 0.0017 27.4 2.4 32 76-109 57-88 (98)
240 3gae_A Protein DOA1; UFD3, CDC 20.4 2.6E+02 0.0088 27.6 8.0 129 423-575 71-217 (253)
No 1
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.1e-42 Score=399.35 Aligned_cols=504 Identities=15% Similarity=0.122 Sum_probs=401.4
Q ss_pred HHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHh-hCchHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 002999 191 VRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLE-EGVTKSVIHSLIGN-SEKEKEYAVKLLLEFC 268 (859)
Q Consensus 191 i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls 268 (859)
....|++|.|+++|++++. .+|..|+.+|.+++.+++++..+.. .|+++.|+++|.++ +.+++..|+.+|.+|+
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~----~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQ----VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 88 (529)
T ss_dssp ----CHHHHHHHHHTCSCH----HHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hhhHhhHHHHHHHhCCCCH----HHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3457999999999998887 9999999999999999888877775 58999999999865 8899999999999999
Q ss_pred cChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHH
Q 002999 269 IDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFL 347 (859)
Q Consensus 269 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~ 347 (859)
.+++++..++. .|+++.|+++|+ ++++.++..|+.+|.||+.. +.++..+.+.|++|+|+.+|.+++.+++..++.+
T Consensus 89 ~~~~~~~~i~~-~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 89 HHREGLLAIFK-SGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp TSHHHHHHHHH-TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred cCchhHHHHHH-cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999988885 799999999999 78899999999999999976 4556778899999999999999999999999999
Q ss_pred HHHhcCC-CccHHHHHH-hhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHH
Q 002999 348 VGKLTLT-NSCKEHIAR-QCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPEL 422 (859)
Q Consensus 348 L~~la~~-~~~~~~i~~-~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 422 (859)
|.+++.. ++++..+.+ +|++.|+++|+ +...+..++.+|++|+.+++++..+++.|+++.|+.++.+ .+..+
T Consensus 167 L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~---~~~~~ 243 (529)
T 1jdh_A 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD---PSQRL 243 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS---SCHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC---CChHH
Confidence 9999985 466777655 55799999998 5567778999999999988999999999999999999965 46789
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCC
Q 002999 423 KELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDG 502 (859)
Q Consensus 423 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~ 502 (859)
++.++++|.||+....... ...++++.|++++.+.+++++..++++|.+|+.++. +.+..+.+.|+
T Consensus 244 ~~~a~~~L~~l~~~~~~~~-----------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~---~~~~~~~~~~~ 309 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQE-----------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY---KNKMMVCQVGG 309 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCS-----------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH---HHHHHHHHTTH
T ss_pred HHHHHHHHHHHhcCChhhH-----------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHcCC
Confidence 9999999999998764322 235899999999999999999999999999998753 33677889999
Q ss_pred HHHHHHhhcCC--ChhHHHHHHHHHHHHhhhcc--HHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcH
Q 002999 503 IKYIIQFLEHP--EVEHRTYAFRLTRILSERIG--QDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEE 578 (859)
Q Consensus 503 i~~Lv~lL~~~--~~~v~~~A~~~L~~Ls~~~~--~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~ 578 (859)
++.|+.++.+. +++++..|+++|.+|+...+ +..+..+.+.|+++.|+++|.+++. ..++..|+++|+|++.++.
T Consensus 310 v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~-~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH-WPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC-HHHHHHHHHHHHHHTTSGG
T ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc-hHHHHHHHHHHHHHhcChh
Confidence 99999999763 36999999999999984322 3356677778999999999998774 3788899999999987544
Q ss_pred HHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHH
Q 002999 579 EVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARV 658 (859)
Q Consensus 579 ~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~v 658 (859)
....+.+.|+++.|+.+|.+... .+++.+.+++.+.. +........+
T Consensus 389 ~~~~~~~~~~i~~L~~ll~~~~~-----------~v~~~a~~~l~n~~----------------------~~~~~~~~~i 435 (529)
T 1jdh_A 389 NHAPLREQGAIPRLVQLLVRAHQ-----------DTQRRTSMGGTQQQ----------------------FVEGVRMEEI 435 (529)
T ss_dssp GHHHHHHTTHHHHHHHHHHHHHH-----------HHC---------------------------------CBTTBCHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHhH-----------HHHHHHhcccCchh----------------------hhccccHHHH
Confidence 44455555555555555543110 01112222211100 0000013344
Q ss_pred HHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccC
Q 002999 659 KQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEE 738 (859)
Q Consensus 659 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 738 (859)
+..++.+|++++... .....+.+.|++++|+.+|.++
T Consensus 436 ~~~~~~al~~L~~~~-------------------------------------------~~~~~l~~~~~v~~l~~ll~~~ 472 (529)
T 1jdh_A 436 VEGCTGALHILARDV-------------------------------------------HNRIVIRGLNTIPLFVQLLYSP 472 (529)
T ss_dssp HHHHHHHHHHHTTSH-------------------------------------------HHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHHhcCc-------------------------------------------hHHHHHhccCCccHHHHHHcCC
Confidence 444555555554321 2234577899999999999999
Q ss_pred ChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHH
Q 002999 739 DTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERV 800 (859)
Q Consensus 739 ~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~ 800 (859)
+++++..|..+|++|..+ +.+...|.+.||+++|.+++. +++++++++|.++|.++
T Consensus 473 ~~~v~~~a~~~l~~l~~~-----~~~~~~i~~~~~~~~L~~l~~-~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 473 IENIQRVAAGVLCELAQD-----KEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHHHHHHHHHTTS-----HHHHHHHHHTTCHHHHHHGGG-CSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcC-----HHHHHHHHHcCChHHHHHHhc-CCCHHHHHHHHHHHHhc
Confidence 999999999999999965 246788999999999999998 69999999999999986
No 2
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=402.91 Aligned_cols=508 Identities=14% Similarity=0.109 Sum_probs=421.9
Q ss_pred HHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHh-hCchHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 002999 191 VRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLE-EGVTKSVIHSLIGN-SEKEKEYAVKLLLEFC 268 (859)
Q Consensus 191 i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls 268 (859)
....|++|.|+.+|++++. .+|..|+.+|.+|+.++.++..+.. .|+++.|+++|.++ +.+++..|+.+|.+|+
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~----~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQ----VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 85 (644)
T ss_dssp --CTTTHHHHHHHHTCSCH----HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred hhhhchHHHHHHHHcCCCH----HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4677999999999998887 9999999999999999888888876 48999999999875 7899999999999999
Q ss_pred cChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHH
Q 002999 269 IDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFL 347 (859)
Q Consensus 269 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~ 347 (859)
.+++++..+.. .|+++.|+++|+ ++++.++..|+.+|.||+.. +..+..+++.|+++.|+.+|.+++..++..++.+
T Consensus 86 ~~~~~~~~i~~-~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 86 HHREGLLAIFK-SGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp TSHHHHHHHHT-TTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred cChhhHHHHHH-cCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 99998888885 799999999999 78899999999999999976 4556778899999999999999999888888999
Q ss_pred HHHhcC-CCccHHHHHH-hhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHH
Q 002999 348 VGKLTL-TNSCKEHIAR-QCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPEL 422 (859)
Q Consensus 348 L~~la~-~~~~~~~i~~-~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 422 (859)
|.+++. +++++..+.+ +|++.|+++|+ ....+..++.+|++|+.+++++..+++.|+++.|+.++.. .+..+
T Consensus 164 L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~---~~~~~ 240 (644)
T 2z6h_A 164 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD---PSQRL 240 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC---SCHHH
T ss_pred HHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc---CCHHH
Confidence 999997 5667777765 55799999999 4577889999999999988999999999999999999965 46899
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCC
Q 002999 423 KELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDG 502 (859)
Q Consensus 423 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~ 502 (859)
++.++++|.||+....... ...++++.|+.+|.+.++++++.++++|.+|+.++. ..+..+.+.|+
T Consensus 241 ~~~a~~~L~nL~~~~~~~~-----------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~---~~~~~v~~~g~ 306 (644)
T 2z6h_A 241 VQNCLWTLRNLSDAATKQE-----------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY---KNKMMVCQVGG 306 (644)
T ss_dssp HHHHHHHHHHHGGGCTTCC-----------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTH
T ss_pred HHHHHHHHHHHhhcchhhh-----------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHcCC
Confidence 9999999999997654321 235899999999999999999999999999998753 33567888999
Q ss_pred HHHHHHhhcCCC--hhHHHHHHHHHHHHhhhcc--HHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcH
Q 002999 503 IKYIIQFLEHPE--VEHRTYAFRLTRILSERIG--QDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEE 578 (859)
Q Consensus 503 i~~Lv~lL~~~~--~~v~~~A~~~L~~Ls~~~~--~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~ 578 (859)
++.|+.++.+.+ ++++..|+++|.+|+...+ ...+..+...|+++.|+++|.+++. ..++..|+++|+||+.+
T Consensus 307 v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nLa~~-- 383 (644)
T 2z6h_A 307 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH-WPLIKATVGLIRNLALC-- 383 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC-HHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc-hHHHHHHHHHHHHHccC--
Confidence 999999998743 6999999999999984222 2344556677999999999998764 37888899999988762
Q ss_pred HHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHH
Q 002999 579 EVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARV 658 (859)
Q Consensus 579 ~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~v 658 (859)
+..+..+.+.|++|.|+++|.+. ++.+
T Consensus 384 ----------------------------------------------------~~~~~~i~~~~~i~~Lv~lL~~~-~~~v 410 (644)
T 2z6h_A 384 ----------------------------------------------------PANHAPLREQGAIPRLVQLLVRA-HQDT 410 (644)
T ss_dssp ----------------------------------------------------GGGHHHHHHTTHHHHHHHHHHHH-HHHH
T ss_pred ----------------------------------------------------HHHHHHHHHcCCHHHHHHHHhcc-chhh
Confidence 12234566889999999999985 9999
Q ss_pred HHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccC
Q 002999 659 KQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEE 738 (859)
Q Consensus 659 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 738 (859)
|+.|+|+++|-. . ..| ..
T Consensus 411 r~~a~~al~n~~-----~-----------------------------------------------~~~----------~~ 428 (644)
T 2z6h_A 411 QRRTSMGGTQQQ-----F-----------------------------------------------VEG----------VR 428 (644)
T ss_dssp TTC--------------------------------------------------------------CCS----------SC
T ss_pred hhHhhhccccch-----h-----------------------------------------------ccc----------cc
Confidence 999999887510 0 001 12
Q ss_pred ChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHH
Q 002999 739 DTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVR 818 (859)
Q Consensus 739 ~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 818 (859)
+.++++.|+.+|.+|+.+ . .+...+.+.|+|++|++++. +++++++..|+++|.++....+++..+...+ ++.
T Consensus 429 ~~~v~~~a~~aL~~La~~----~-~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g-~l~ 501 (644)
T 2z6h_A 429 MEEIVEGCTGALHILARD----V-HNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQDKEAAEAIEAEG-ATA 501 (644)
T ss_dssp HHHHHHHHHHHHHHHTTS----H-HHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHHTT-CHH
T ss_pred HHHHHHHHHHHHHHHhcC----H-HHHHHHHhCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcC-Chh
Confidence 467889999999999977 2 45678889999999999998 4899999999999999987666666555444 458
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhhhc
Q 002999 819 ALVEAFKHGNANAKRHAQEALTNLKQIS 846 (859)
Q Consensus 819 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 846 (859)
+|+++++++|+.+|..|+.+|.+|....
T Consensus 502 ~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 502 PLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998754
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.3e-42 Score=402.77 Aligned_cols=470 Identities=14% Similarity=0.105 Sum_probs=384.8
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHH-hcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHH
Q 002999 168 DGLDKALDIVFKISEEHPSNRYRVR-NAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVI 246 (859)
Q Consensus 168 ~~~~~al~~L~~l~~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv 246 (859)
+.+ .|.+.+..+.....+....+. ..|++|.|+.++.+.+. .+++.|+++|.+.+.++++|..+.+.|+ +.|+
T Consensus 263 ~~~-~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~----~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~ 336 (810)
T 3now_A 263 SKV-RVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE----LQQRVACECLIAASSKKDKAKALCEQGV-DILK 336 (810)
T ss_dssp HHH-HHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCH----HHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHH
T ss_pred hHH-HHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHH
Confidence 445 488888888876665555444 88999999999999988 9999999999999999999999999885 9999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCh--hhhhHhhhh---hChHHHHHHhhcCCC--ChHHHHHHHHHHHHhcCCCcChHH
Q 002999 247 HSLIGNSEKEKEYAVKLLLEFCIDE--AYCKSVASE---KGALVLLSSMTGNLE--LPALSNLADEVFKKMERIEEIVQP 319 (859)
Q Consensus 247 ~lL~~~~~~~~~~A~~~L~~Ls~~~--~~~~~i~~~---~g~i~~Lv~lL~~~~--~~~~~~~a~~aL~nL~~~~~~~~~ 319 (859)
.++++++..++..|+.+|++++.+. +....++.. ...++.|+++|. ++ |+++++.|+++|.+|+..++.+..
T Consensus 337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~-~~~~d~~v~~~AveaLayLS~~~~vk~~ 415 (810)
T 3now_A 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLI-KPGKDKDIRRWAADGLAYLTLDAECKEK 415 (810)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHH-CSSCCSSHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 9999999999999999999997542 233233321 234677888888 44 889999999999999999999988
Q ss_pred HHh-cCChHHHHHHhccCChHHHHHHHHHHHHhcCCCc------------------------------cH---HHHHH-h
Q 002999 320 LAA-AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNS------------------------------CK---EHIAR-Q 364 (859)
Q Consensus 320 i~~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~------------------------------~~---~~i~~-~ 364 (859)
++. .|+||+||.+|.+++..++..++++|.||+.+.+ ++ ..+.+ +
T Consensus 416 lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 416 LIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 874 7999999999999999999999999999998532 12 34444 5
Q ss_pred hHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccc
Q 002999 365 CAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWEL 442 (859)
Q Consensus 365 gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 442 (859)
++|+|+.+|+ ++.+++.|+++|.||+.+.+++..++++|++|+|+.+|.+ .+...++.|+++|.||+.+......
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s---~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE---GTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc---CCHHHHHHHHHHHHHHhcCCChhhh
Confidence 5799999999 8999999999999999877899999999999999999976 4578999999999999876433221
Q ss_pred cccccccCcccccchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHH
Q 002999 443 ASADKLGHSMQSESIVSSLLGLLSGVSP-QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYA 521 (859)
Q Consensus 443 ~~~~~~~~~l~~~~~i~~Ll~LL~~~~~-~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 521 (859)
+. . -...+++++|+.||.+... ..+..++++|.||+..+. +.++.|.+.||++.|+.+|.++++.++..|
T Consensus 573 ~~----~--~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d---~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A 643 (810)
T 3now_A 573 FS----G--QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE---SVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643 (810)
T ss_dssp TT----T--HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHSCCTTHHHHH
T ss_pred hc----c--hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH---HHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence 10 0 0124689999999986634 556789999999999863 346778899999999999999999999999
Q ss_pred HHHHHHHhhhccHHHHHhcCC-CCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhc
Q 002999 522 FRLTRILSERIGQDLAYALKP-FDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHK 600 (859)
Q Consensus 522 ~~~L~~Ls~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~ 600 (859)
+++|+||+ .+++.+..+.. .|.++.|+.++.+++. +++..|+++|+||+.++.
T Consensus 644 ~~~L~NLa--~~~~~~~~~v~~~g~l~~Lv~LL~s~d~--~vq~~Aa~ALanLt~~s~---------------------- 697 (810)
T 3now_A 644 AQCLCNLV--MSEDVIKMFEGNNDRVKFLALLCEDEDE--ETATACAGALAIITSVSV---------------------- 697 (810)
T ss_dssp HHHHHHHT--TSHHHHHHHHSSSSHHHHHHHGGGCSSH--HHHHHHHHHHHHHHHHCH----------------------
T ss_pred HHHHHHHh--CChHHHHHHHhccCcHHHHHHHhcCCCH--HHHHHHHHHHHHHhCCCH----------------------
Confidence 99999997 33445556554 5899999999999876 899999999999987221
Q ss_pred ccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHh-cCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhccccccc
Q 002999 601 SSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVRE-QRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAE 679 (859)
Q Consensus 601 ~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~-~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~ 679 (859)
...+.+.+ .|++|.|+++|.++ ++++|..|+|+|.|++.++..
T Consensus 698 -------------------------------~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~~s~e---- 741 (810)
T 3now_A 698 -------------------------------KCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMINAGEE---- 741 (810)
T ss_dssp -------------------------------HHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHTTCHH----
T ss_pred -------------------------------HHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHhCCHH----
Confidence 12223444 78999999999995 999999999999999875322
Q ss_pred CCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccC---ChhHHHHHHHHHHhhhhc
Q 002999 680 DTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEE---DTNVEIAAVEALSTLIID 756 (859)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~~L~~d 756 (859)
....++++|++++|+++|... +.++.+.|+.+|.++...
T Consensus 742 --------------------------------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 742 --------------------------------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp --------------------------------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 123477899999999999755 789999999999999965
No 4
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.2e-40 Score=403.35 Aligned_cols=539 Identities=15% Similarity=0.113 Sum_probs=430.9
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE 231 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~ 231 (859)
.++.++..|.+++. +....+++.|+.. ++..+. .|++|.|+.+|++.+. .+|+.|+.+|.+|+.++.
T Consensus 116 ~i~~lv~~L~~~~~--~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~----~vr~~A~~~L~~L~~~~~ 182 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQ--MLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQ----VVVNKAAVMVHQLSKKEA 182 (780)
T ss_dssp ----------CCSC--HHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCH----HHHHHHHHHHHHHHTSHH
T ss_pred cHHHHHHHhcCccH--HHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCH----HHHHHHHHHHHHHhCCCh
Confidence 47788888887543 3333355555533 233444 7999999999998877 999999999999999988
Q ss_pred hHHHHHh-hCchHHHHHHhcCC-CHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHH
Q 002999 232 SKKIMLE-EGVTKSVIHSLIGN-SEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKK 309 (859)
Q Consensus 232 ~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~n 309 (859)
++..+.. .|+++.|+++|+++ +.+++..|+.+|.+|+..++++..++. .|+|+.|+.+|+ ++++.++..|+.+|.|
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~-~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLG-SPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTT-CSCHHHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 8888885 58999999999865 889999999999999999988888875 799999999999 7889999999999999
Q ss_pred hcCCC-cChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC-CccHHHHHH-hhHHHHHHHhC---ChhHHHHHH
Q 002999 310 MERIE-EIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT-NSCKEHIAR-QCAKVLVELLS---KPAGRAASL 383 (859)
Q Consensus 310 L~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~-~~~~~~i~~-~gi~~Lv~lL~---~~~~~~~a~ 383 (859)
|+... ..+..+.+.|+++.|+.+|.+++..++..++.+|.+++.. ++++..+.+ ++++.|+.+|+ ....+..++
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~ 340 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 340 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 99764 5566777899999999999999999999999999999974 566777665 55799999999 445677899
Q ss_pred HHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHH
Q 002999 384 KALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLG 463 (859)
Q Consensus 384 ~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~ 463 (859)
.+|++|+.+..++..+++.|+++.|+.+|.+ .+..+++.|+++|.+|+...... ....++++.|+.
T Consensus 341 ~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~---~~~~~~~~a~~~L~~L~~~~~~~-----------~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 341 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTD---PSQRLVQNCLWTLRNLSDAATKQ-----------EGMEGLLGTLVQ 406 (780)
T ss_dssp HHHHHHHTSTTHHHHHHHTTHHHHHGGGTTC---SCHHHHHHHHHHHHHHHTTCTTC-----------SCCHHHHHHHHH
T ss_pred HHHHHhhcChHHHHHHHHhchHHHHHHHHcC---CchHHHHHHHHHHHHHhccchhh-----------hhhhhHHHHHHH
Confidence 9999999988999999999999999999965 45789999999999999876432 223689999999
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCC-C-hhHHHHHHHHHHHHhhhccH--HHHHh
Q 002999 464 LLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHP-E-VEHRTYAFRLTRILSERIGQ--DLAYA 539 (859)
Q Consensus 464 LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~-~~v~~~A~~~L~~Ls~~~~~--~~~~~ 539 (859)
+|.+.+++++..++++|.+|+.++. ..+..+.+.|+++.|+.+|.+. + ..++..|+++|.+|+....+ ..+..
T Consensus 407 lL~~~d~~vr~~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 407 LLGSDDINVVTCAAGILSNLTCNNY---KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCH---HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9999999999999999999998764 3356788999999999999863 3 38999999999999842222 23556
Q ss_pred cCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhh
Q 002999 540 LKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLL 619 (859)
Q Consensus 540 l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~ 619 (859)
+...|+++.|+++|.+++. ..++..|+++|+||+.++.....+.+.|+++.|+.+|.+... ..+..++
T Consensus 484 v~~~~~l~~L~~lL~~~~~-~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~-----------~~~~~aa 551 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSH-WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ-----------DTQRRTS 551 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCC-HHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHH-----------HHHHTTC
T ss_pred HHHcCCHHHHHHHhcCCCh-HHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcch-----------hHHHHHh
Confidence 7777999999999998875 478999999999999877666888899999999999976211 1122222
Q ss_pred hhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecC
Q 002999 620 GLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGK 699 (859)
Q Consensus 620 ~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (859)
+++.+ + + +.....+++++..++.+|++|+.+.
T Consensus 552 ~al~n---------q---------~----~~~~~~~~~v~~~a~~aL~~La~~~-------------------------- 583 (780)
T 2z6g_A 552 MGGTQ---------Q---------Q----FVEGVRMEEIVEACTGALHILARDI-------------------------- 583 (780)
T ss_dssp ------------------------C----CSTTCCHHHHHHHHHHHHHHHTTSH--------------------------
T ss_pred hcccc---------c---------h----hhcccChHHHHHHHHHHHHHHhcCh--------------------------
Confidence 22211 0 0 1111125789999999999997532
Q ss_pred CCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHH
Q 002999 700 PPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVD 779 (859)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ 779 (859)
...+.+++.|+|++|+++|.++++.++..|+.+|++|+.+ ..+...|.+.||+++|.+
T Consensus 584 -----------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-----~~~~~~i~~~g~i~~L~~ 641 (780)
T 2z6g_A 584 -----------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-----KEAAEAIEAEGATAPLTE 641 (780)
T ss_dssp -----------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-----HHHHHHHHHTTCHHHHHH
T ss_pred -----------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHCCCHHHHHH
Confidence 1223467899999999999999999999999999999966 246788999999999999
Q ss_pred HhhhcCchhHHHHHHHHHHHHHhccc
Q 002999 780 LFTEVRPGLLQERTVWMLERVLRVEG 805 (859)
Q Consensus 780 ll~~~~~~~~~~~A~~~l~~~~~~~~ 805 (859)
++. ++++++++.|+++|.++.....
T Consensus 642 Ll~-~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 642 LLH-SRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp GGG-CSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHc-CCCHHHHHHHHHHHHHHHcCCh
Confidence 998 6999999999999999997553
No 5
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.2e-41 Score=408.33 Aligned_cols=543 Identities=13% Similarity=0.074 Sum_probs=441.6
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhh
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYC 274 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~ 274 (859)
..++.++..|.+++. +++..++..|+.. ++..+. .|+++.|+.+|.+++..+++.|+.+|.+|+.++..+
T Consensus 115 ~~i~~lv~~L~~~~~----~~r~~a~~~l~~~-----~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~ 184 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQ----MLKHAVVNLINYQ-----DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR 184 (780)
T ss_dssp -----------CCSC----HHHHHHHHHHHHH-----HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred ccHHHHHHHhcCccH----HHHHHHHHHHHhh-----hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhH
Confidence 358899999999887 8899888888754 334444 899999999999999999999999999999998888
Q ss_pred hHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 002999 275 KSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT 354 (859)
Q Consensus 275 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~ 354 (859)
..+....|+++.|+++|+.+.++.++..|+.+|.+|+..++++..+.+.|+|+.|+.+|.++++.++..++++|.+|+.+
T Consensus 185 ~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 185 HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 88876678999999999845589999999999999999988899999999999999999999999999999999999987
Q ss_pred C-ccHHHHHH-hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 002999 355 N-SCKEHIAR-QCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAAT 429 (859)
Q Consensus 355 ~-~~~~~i~~-~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~ 429 (859)
. ..+..+.+ ++++.|+.+|+ +..++..++.+|++|+..+ +++..+.+.|+++.|+.+|+. ......++.++.+
T Consensus 265 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~--~~~~~~~~~a~~a 342 (780)
T 2z6g_A 265 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSRV 342 (780)
T ss_dssp STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 5 44666654 56799999998 7788999999999999865 788899999999999999976 3456778899999
Q ss_pred HHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHh
Q 002999 430 IANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQF 509 (859)
Q Consensus 430 L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~l 509 (859)
|.+|+.+...+. .+...|+++.|+.++.+.++.++..++++|.+|+...... ....++++.|+.+
T Consensus 343 L~~Ls~~~~~~~---------~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~------~~~~~~i~~Lv~l 407 (780)
T 2z6g_A 343 LKVLSVCSSNKP---------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------EGMEGLLGTLVQL 407 (780)
T ss_dssp HHHHHTSTTHHH---------HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC------SCCHHHHHHHHHH
T ss_pred HHHhhcChHHHH---------HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh------hhhhhHHHHHHHH
Confidence 999998765544 4778899999999999999999999999999999875321 1123678999999
Q ss_pred hcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHH----HHHHHH
Q 002999 510 LEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEE----VKTLLE 585 (859)
Q Consensus 510 L~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~----~~~l~~ 585 (859)
+.+++++++..|+++|.+|+ ..+.+.+..+.+.|+++.|+++|.+.+...+++..|+++|++|+..+.. ...+.+
T Consensus 408 L~~~d~~vr~~A~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~ 486 (780)
T 2z6g_A 408 LGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486 (780)
T ss_dssp TTCSCHHHHHHHHHHHHHHT-SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH-hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999998 4456677788888999999999987443237899999999999875432 257788
Q ss_pred hccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 002999 586 ATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHG 665 (859)
Q Consensus 586 ~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~a 665 (859)
.|+++.|+.+|.+.. ...+.+.++++|.+++. .+..+..+.+.|++|.|+++|.+. ++.+|+.|+|+
T Consensus 487 ~~~l~~L~~lL~~~~----------~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~a 553 (780)
T 2z6g_A 487 HYGLPVVVKLLHPPS----------HWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRA-HQDTQRRTSMG 553 (780)
T ss_dssp TTCHHHHHHTTSTTC----------CHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHH-HHHHHHTTC--
T ss_pred cCCHHHHHHHhcCCC----------hHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhc-chhHHHHHhhc
Confidence 999999999987621 12467889999999986 466678899999999999999985 89999999998
Q ss_pred hhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHH
Q 002999 666 LKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIA 745 (859)
Q Consensus 666 L~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~ 745 (859)
++|-. . ..| ....++++.
T Consensus 554 l~nq~-----~-----------------------------------------------~~~----------~~~~~v~~~ 571 (780)
T 2z6g_A 554 GTQQQ-----F-----------------------------------------------VEG----------VRMEEIVEA 571 (780)
T ss_dssp ----C-----C-----------------------------------------------STT----------CCHHHHHHH
T ss_pred cccch-----h-----------------------------------------------hcc----------cChHHHHHH
Confidence 77510 0 001 123568899
Q ss_pred HHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhh
Q 002999 746 AVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFK 825 (859)
Q Consensus 746 A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~ 825 (859)
|+.+|++|+.+ . .+...|.+.|+|++|++++. ++++.++..|+.+|.++....+++..+... +++.+|+++++
T Consensus 572 a~~aL~~La~~----~-~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~-g~i~~L~~Ll~ 644 (780)
T 2z6g_A 572 CTGALHILARD----I-HNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQDKEAAEAIEAE-GATAPLTELLH 644 (780)
T ss_dssp HHHHHHHHTTS----H-HHHHHHHHTCCHHHHHHGGG-CSCHHHHHHHHHHHHHHHTSHHHHHHHHHT-TCHHHHHHGGG
T ss_pred HHHHHHHHhcC----h-hhHHHHHHCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCHHHHHHHHHC-CCHHHHHHHHc
Confidence 99999999966 2 45677889999999999998 599999999999999998766666655544 45699999999
Q ss_pred cCChhhHHHHHHHHHHHhhhcC
Q 002999 826 HGNANAKRHAQEALTNLKQISG 847 (859)
Q Consensus 826 ~~~~~~~~~A~~~L~~L~~~~~ 847 (859)
++|+.+|..|+.+|.+|.....
T Consensus 645 ~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 645 SRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999999999998654
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=9.5e-41 Score=393.32 Aligned_cols=543 Identities=13% Similarity=0.110 Sum_probs=428.6
Q ss_pred HHhcCcHHHHHHHHhcCCC-------CcchHHHHHHHHHHHhcccC---cchHHHHHhhCchHHHHHHhcCCCHHHHHHH
Q 002999 191 VRNAGVVLLIVKLLKSSSK-------SVGTILRSKALMALLSMAKD---EESKKIMLEEGVTKSVIHSLIGNSEKEKEYA 260 (859)
Q Consensus 191 i~~~g~i~~Lv~lL~~~~~-------~~~~~~~~~al~~L~~L~~~---~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A 260 (859)
+...|++..|++.-..-.. ....+.|.++.-+|..+-.+ +..|+... .-+-..+...+..++.+....|
T Consensus 189 ~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a 267 (810)
T 3now_A 189 LVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFT-DQIDEYIKDKLLAPDMESKVRV 267 (810)
T ss_dssp HHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHH-HHHHHHHHHHHSSCCHHHHHHH
T ss_pred hhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHHHhccCChHhHHHH
Confidence 4446788888877654111 01337899999999998766 23343332 2223344455667888888999
Q ss_pred HHHHHHhccC-hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChH
Q 002999 261 VKLLLEFCID-EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDN 339 (859)
Q Consensus 261 ~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~ 339 (859)
++++.++... .+....+....|+++.|+.++. ++++.+++.|++++.+++.++.+|..+.+.|+ |+|+.++.++++.
T Consensus 268 ~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~-s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~ 345 (810)
T 3now_A 268 TVAITALLNGPLDVGNQVVAREGILQMILAMAT-TDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDG 345 (810)
T ss_dssp HHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHH
T ss_pred HHHHHHHhcCCHHHHHHHHhccchHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHH
Confidence 9999998776 4666667667899999999999 88999999999999999999899999999885 9999999999999
Q ss_pred HHHHHHHHHHHhcCCC--cc-HHHHHHhh----HHHHHHHhC----ChhHHHHHHHHHHHhhCCCcchHHHHH-cCcHHH
Q 002999 340 VQIEMAFLVGKLTLTN--SC-KEHIARQC----AKVLVELLS----KPAGRAASLKALYNLSGLDDNATILVD-SALLPA 407 (859)
Q Consensus 340 ~~~~aa~~L~~la~~~--~~-~~~i~~~g----i~~Lv~lL~----~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~G~i~~ 407 (859)
++..++.+|++++.+. +. +..+.+++ ++.|+++|. ++++++.|+++|.+|+..++.+..++. .|++|.
T Consensus 346 vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~ 425 (810)
T 3now_A 346 IRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHA 425 (810)
T ss_dssp HHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHH
Confidence 9999999999997532 22 23444444 356667776 467999999999999999988888775 799999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccc------------------------cccccCcccccchHHHHHH
Q 002999 408 LTDILFKSHDASPELKELAAATIANVVSNPGCWELAS------------------------ADKLGHSMQSESIVSSLLG 463 (859)
Q Consensus 408 Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~------------------------~~~~~~~l~~~~~i~~Ll~ 463 (859)
|+.+|.+ .+..++..|+++|.||+.+.+.....+ +....+.+.+.|+++.|+.
T Consensus 426 LV~LL~s---~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~ 502 (810)
T 3now_A 426 LMDLARG---GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCA 502 (810)
T ss_dssp HHHHHHT---TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhCC---CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999975 456899999999999998653221000 0000135778899999999
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhc-CC
Q 002999 464 LLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYAL-KP 542 (859)
Q Consensus 464 LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l-~~ 542 (859)
+|+++++.+++.++|+|.|++.++. .+..+.+.|++++|+.+|.++++..+..|+++|.+|+...++...-.. ..
T Consensus 503 LL~s~s~~vqe~Aa~aL~NLA~d~~----~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 503 LAKTESHNSQELIARVLNAVCGLKE----LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHTSHH----HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHH----HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999997643 477889999999999999999999999999999999844444321100 01
Q ss_pred CCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhh
Q 002999 543 FDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGL 621 (859)
Q Consensus 543 ~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~ 621 (859)
.|++++|+.+|.++.. ...+..|+++|.||+.+++.. ..+++.|+++.|+.+|.+.. ..+++.++.+
T Consensus 579 ~~aIppLv~LL~~~~~-~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~-----------~~Vq~~A~~~ 646 (810)
T 3now_A 579 LDVIRPLLNLLQQDCT-ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH-----------LYLTRAAAQC 646 (810)
T ss_dssp HHTHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC-----------TTHHHHHHHH
T ss_pred hcHHHHHHHHhCCCCc-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-----------HHHHHHHHHH
Confidence 2689999999986544 244568999999999986655 78999999999999998621 2367889999
Q ss_pred hhhcccCCChhhHHHHHh-cCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCC
Q 002999 622 LLHFTRSVNPQTLGMVRE-QRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKP 700 (859)
Q Consensus 622 L~~~~~~~~~~~~~~i~~-~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (859)
+.+++. +++.+..+.+ .|.+|.|+.+|.++ +..+|+.|+|+|+|++.+++...
T Consensus 647 L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~----------------------- 700 (810)
T 3now_A 647 LCNLVM--SEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCC----------------------- 700 (810)
T ss_dssp HHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHH-----------------------
T ss_pred HHHHhC--ChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHH-----------------------
Confidence 999986 5667777775 79999999999996 99999999999999998533211
Q ss_pred CCCCCCCccCCCCCCcCCcchhhh-cCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHH
Q 002999 701 PPEPTTCPIHNTPCEDDSQLCLLK-SNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVD 779 (859)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ 779 (859)
..+++ +|+|++|+++|.+++.+++..|+.+|+||+.. + . .....|.++|++++|.+
T Consensus 701 -------------------~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s--~-e~~~~l~e~G~i~~L~~ 757 (810)
T 3now_A 701 -------------------EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-G--E-EIAKKLFETDIMELLSG 757 (810)
T ss_dssp -------------------HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-C--H-HHHHHHHTSTHHHHHTT
T ss_pred -------------------HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-C--H-HHHHHHHHCCCHHHHHH
Confidence 12445 79999999999999999999999999999964 2 2 34688999999999999
Q ss_pred Hhhhc--CchhHHHHHHHHHHHHHhcc
Q 002999 780 LFTEV--RPGLLQERTVWMLERVLRVE 804 (859)
Q Consensus 780 ll~~~--~~~~~~~~A~~~l~~~~~~~ 804 (859)
++..+ ++.++.+.|..+|+.+...+
T Consensus 758 LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 758 LGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp SCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 99753 47899999999999999654
No 7
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1e-40 Score=388.96 Aligned_cols=490 Identities=14% Similarity=0.091 Sum_probs=407.3
Q ss_pred HHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCc
Q 002999 236 MLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEE 315 (859)
Q Consensus 236 i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~ 315 (859)
....|+++.|+.+|+++++.++..|+.+|.+++.+++.+..+....|+++.|+++|..+.+++++..|+.+|.+|+..++
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 34678999999999999999999999999999999888888776679999999999845689999999999999999888
Q ss_pred ChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC-ccHHHHH-HhhHHHHHHHhC--ChhHHHHHHHHHHHhhC
Q 002999 316 IVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN-SCKEHIA-RQCAKVLVELLS--KPAGRAASLKALYNLSG 391 (859)
Q Consensus 316 ~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~-~~~~~i~-~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~ 391 (859)
++..+.+.|++|+|+.+|.+++++++..++++|.+++.++ ..+..+. .++++.|+++|+ +..++..++.+|.+|+.
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999875 4566665 456799999999 78889999999999998
Q ss_pred CC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCCh
Q 002999 392 LD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSP 470 (859)
Q Consensus 392 ~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~ 470 (859)
.+ +++..+.+.|+++.|+.+|++. .+...+..++.+|.||+.++..+. .+.+.|+++.|+.++.++++
T Consensus 173 ~~~~~~~~i~~~~~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~~~~~~~---------~~~~~g~~~~L~~ll~~~~~ 241 (529)
T 1jdh_A 173 GNQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSSNKP---------AIVEAGGMQALGLHLTDPSQ 241 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSTTHHH---------HHHHTTHHHHHHTTTTSSCH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHhC--ChHHHHHHHHHHHHHHhcCcccHH---------HHHHCCCHHHHHHHHhCCCh
Confidence 75 7889999999999999999863 456788899999999998766544 46778999999999999999
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHH
Q 002999 471 QCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFK 550 (859)
Q Consensus 471 ~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv 550 (859)
+++..++|+|.+|+....... ...|+++.|+.++.+++++++..|+++|.+|+ ..+.+.+..+.+.|+++.|+
T Consensus 242 ~~~~~a~~~L~~l~~~~~~~~------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 242 RLVQNCLWTLRNLSDAATKQE------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp HHHHHHHHHHHHHHTTCTTCS------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChhhH------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHH
Confidence 999999999999998753311 12368999999999999999999999999998 44566777888889999999
Q ss_pred HhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCC
Q 002999 551 DKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVN 630 (859)
Q Consensus 551 ~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~ 630 (859)
++|.+.+...+++..|+++|+||+.++.. +
T Consensus 315 ~ll~~~~~~~~v~~~a~~~L~nl~~~~~~--------------------------------------------------~ 344 (529)
T 1jdh_A 315 RTVLRAGDREDITEPAICALRHLTSRHQE--------------------------------------------------A 344 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTT--------------------------------------------------H
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHcCCch--------------------------------------------------H
Confidence 99987432237888999999998762111 1
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccC
Q 002999 631 PQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIH 710 (859)
Q Consensus 631 ~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (859)
...+..+.+.|++|.|+++|.++.++.++..|+|+|+|++.+....
T Consensus 345 ~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~---------------------------------- 390 (529)
T 1jdh_A 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH---------------------------------- 390 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH----------------------------------
T ss_pred HHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh----------------------------------
Confidence 2345567788999999999998623699999999999998643211
Q ss_pred CCCCCcCCcchhhhcCCchHHHhhhccCChhHHH----------------------HHHHHHHhhhhccCcchhhHHHHH
Q 002999 711 NTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEI----------------------AAVEALSTLIIDTSKNFKRGVDEL 768 (859)
Q Consensus 711 ~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~----------------------~A~~aL~~L~~d~~~~~~~~~~~i 768 (859)
..+.+.|++++|+++|.+++.+++. .++.+|++|+.+ + .+...|
T Consensus 391 ---------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~----~-~~~~~l 456 (529)
T 1jdh_A 391 ---------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD----V-HNRIVI 456 (529)
T ss_dssp ---------HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS----H-HHHHHH
T ss_pred ---------HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC----c-hHHHHH
Confidence 2356789999999999987766665 556667777755 2 345778
Q ss_pred HhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002999 769 EREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLK 843 (859)
Q Consensus 769 ~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~ 843 (859)
.+.|++++|++++. +++++++..|.++|.++....++...+... +++.+|.+++++.|+.++..|..+|.+|+
T Consensus 457 ~~~~~v~~l~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~-~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 457 RGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQDKEAAEAIEAE-GATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHT-TCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred hccCCccHHHHHHc-CCchHHHHHHHHHHHHHhcCHHHHHHHHHc-CChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 99999999999998 599999999999999998665666555543 45589999999999999999999999884
No 8
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.8e-39 Score=383.36 Aligned_cols=532 Identities=16% Similarity=0.154 Sum_probs=419.8
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHh-cCcHHHHHHHHhcC-CCCcchHHHHHHHHHHHhcccC
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRN-AGVVLLIVKLLKSS-SKSVGTILRSKALMALLSMAKD 229 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~~~~~al~~L~~L~~~ 229 (859)
.++.++..|.+. +......|+..|.+++...+ ++..+.. .|+++.|+++|.++ +. +++..|+.+|.+|+.+
T Consensus 15 ~i~~Lv~lL~~~--~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~----~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 15 AIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDV----ETARCTAGTLHNLSHH 87 (644)
T ss_dssp THHHHHHHHTCS--CHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHcCC--CHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCH----HHHHHHHHHHHHHhcC
Confidence 477888888753 33455579999999998654 6666665 48999999999875 55 8999999999999999
Q ss_pred cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccCh-hhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHH
Q 002999 230 EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE-AYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFK 308 (859)
Q Consensus 230 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 308 (859)
++++..+.+.|+++.|+.+|+++++.++..|+.+|.+++..+ ..+..+. ..|+++.|+++|+ ++++.++..++.+|.
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~-~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLN-KTNVKFLAITTDCLQ 165 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHH-HTTHHHHHHHGGG-CCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHH-HCCChHHHHHHHC-cCCHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999875 4455554 5899999999999 778888888899999
Q ss_pred HhcC-CCcChHHHHhcCChHHHHHHhccCC-hHHHHHHHHHHHHhcCCCccHHHHHHh-hHHHHHHHhC--ChhHHHHHH
Q 002999 309 KMER-IEEIVQPLAAAGRFEPLINRLCQGS-DNVQIEMAFLVGKLTLTNSCKEHIARQ-CAKVLVELLS--KPAGRAASL 383 (859)
Q Consensus 309 nL~~-~~~~~~~i~~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~la~~~~~~~~i~~~-gi~~Lv~lL~--~~~~~~~a~ 383 (859)
+|+. +++++..+++.|+++.|+.+|.+++ +..+..++.+|.+++.+.+++..+.+. +++.|+.++. +..++..++
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~ 245 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9996 6788999999999999999998665 567788999999999999998888665 4699999998 889999999
Q ss_pred HHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHH
Q 002999 384 KALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLG 463 (859)
Q Consensus 384 ~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~ 463 (859)
++|.||+....... ...|+++.|+.+|.+ .+..+++.|+++|.||+.++..... .+.+.|+++.|+.
T Consensus 246 ~~L~nL~~~~~~~~--~~~~~i~~Lv~lL~~---~d~~v~~~a~~aL~~L~~~~~~~~~--------~v~~~g~v~~Lv~ 312 (644)
T 2z6h_A 246 WTLRNLSDAATKQE--GMEGLLGTLVQLLGS---DDINVVTCAAGILSNLTCNNYKNKM--------MVCQVGGIEALVR 312 (644)
T ss_dssp HHHHHHGGGCTTCC--SCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHH--------HHHHTTHHHHHHH
T ss_pred HHHHHHhhcchhhh--hhhhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHH--------HHHHcCCHHHHHH
Confidence 99999997653321 123789999999964 5679999999999999987643332 4677899999999
Q ss_pred hhcCC--ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC-hhHHHHHHHHHHHHhhhccHHHHHhc
Q 002999 464 LLSGV--SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE-VEHRTYAFRLTRILSERIGQDLAYAL 540 (859)
Q Consensus 464 LL~~~--~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~~L~~Ls~~~~~~~~~~l 540 (859)
+|.+. .++++..++++|.+|+.........+..+.+.|+++.|+.+|.+++ ..++..|+++|.||+. +...+..+
T Consensus 313 lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~--~~~~~~~i 390 (644)
T 2z6h_A 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPL 390 (644)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT--SGGGHHHH
T ss_pred HHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc--CHHHHHHH
Confidence 99763 3799999999999999764322334566888999999999999886 5899999999999983 33445777
Q ss_pred CCCCchHHHHHhhccCCCchhHHHHHHHHHHH--hcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhh
Q 002999 541 KPFDKLVLFKDKILDNQSANCERSDAACILAN--IQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGL 618 (859)
Q Consensus 541 ~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~--L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~ 618 (859)
.+.|+++.|+.+|.+++. +++..|++++++ +..+. ....+.+.+
T Consensus 391 ~~~~~i~~Lv~lL~~~~~--~vr~~a~~al~n~~~~~~~--------------------------------~~~~v~~~a 436 (644)
T 2z6h_A 391 REQGAIPRLVQLLVRAHQ--DTQRRTSMGGTQQQFVEGV--------------------------------RMEEIVEGC 436 (644)
T ss_dssp HHTTHHHHHHHHHHHHHH--HHTTC----------CCSS--------------------------------CHHHHHHHH
T ss_pred HHcCCHHHHHHHHhccch--hhhhHhhhccccchhcccc--------------------------------cHHHHHHHH
Confidence 788999999999998775 788888888877 32210 112356677
Q ss_pred hhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceec
Q 002999 619 LGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICG 698 (859)
Q Consensus 619 ~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (859)
+++|.+++. ++..+..+.+.|++|.|+++|.++ ++.++..|+++|++++.....
T Consensus 437 ~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~l~~~~~~----------------------- 490 (644)
T 2z6h_A 437 TGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEA----------------------- 490 (644)
T ss_dssp HHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSHHH-----------------------
T ss_pred HHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHH-----------------------
Confidence 888888875 568888899999999999999995 999999999999999754211
Q ss_pred CCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHH
Q 002999 699 KPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVV 778 (859)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~ 778 (859)
...+.+.|++++|+.++.+++++|+..|..+|.+++.+ .. ..... +. +++.+.
T Consensus 491 --------------------~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~-~~--~~~~~---~~-~~~il~ 543 (644)
T 2z6h_A 491 --------------------AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED-KP--QDYKK---RL-SVELTS 543 (644)
T ss_dssp --------------------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-SC--HHHHH---HH-HHHHHH
T ss_pred --------------------HHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc-Cc--Hhhhc---cc-chHHHH
Confidence 11256789999999999999999999999999999987 32 11111 11 366666
Q ss_pred HHhhhcCchhHHHHHHHH
Q 002999 779 DLFTEVRPGLLQERTVWM 796 (859)
Q Consensus 779 ~ll~~~~~~~~~~~A~~~ 796 (859)
.++. .+...|..+...
T Consensus 544 ~~~~--~~~~~w~~~~~~ 559 (644)
T 2z6h_A 544 SLFR--TEPMAWNETADL 559 (644)
T ss_dssp HHSC--CSCGGGC-----
T ss_pred HHHh--CCCccccccccc
Confidence 6775 355666655443
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.5e-38 Score=363.61 Aligned_cols=412 Identities=15% Similarity=0.189 Sum_probs=344.8
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcC--hHHHHhcCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCC-c
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKMERIEEI--VQPLAAAGRFEPLINRLC-QGSDNVQIEMAFLVGKLTLTN-S 356 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~--~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~la~~~-~ 356 (859)
...|+.||+.+. ++|++.+..|+..++.|.+.+.| ...+++.|+||+||++|. ++++++|.+|+++|+||+.++ +
T Consensus 56 ~~~i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 56 NWSVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp SCCHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 346899999999 99999999999999998765444 688999999999999996 556899999999999998754 5
Q ss_pred cHHHHHHh-hHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccC--CCCHHHHHHHHHHH
Q 002999 357 CKEHIARQ-CAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSH--DASPELKELAAATI 430 (859)
Q Consensus 357 ~~~~i~~~-gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~--~~~~~~~~~a~~~L 430 (859)
++..+.+. ++|.|+.+|+ ++.+++.|+++|+||+.+. +.+..+.+.|++++|+.+|.... .....++..++++|
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 56666665 5799999999 8899999999999999976 67889999999999999997521 12346788999999
Q ss_pred HHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhh
Q 002999 431 ANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFL 510 (859)
Q Consensus 431 ~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL 510 (859)
.|++.+...... .....++++.|+++|.+.+++++..++|+|++|+.++.. ....+.+.|+++.|+.+|
T Consensus 215 ~nl~~~~~~~~~--------~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~---~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 215 SNLCRNKNPAPP--------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE---RIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHCCCSSCCC--------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH---HHHHHHTTTCHHHHHHHH
T ss_pred HHHhhcccchhH--------HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh---hHHHHHhcccchhhhhhh
Confidence 999997765443 233467899999999999999999999999999988653 356688999999999999
Q ss_pred cCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHH
Q 002999 511 EHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIK 590 (859)
Q Consensus 511 ~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~ 590 (859)
.+++..++..++++|++++ ..++.....+.+.|+++.|+.+|.+++. +++..|+++|+||+.++.
T Consensus 284 ~~~~~~v~~~al~aL~nl~-~~~~~~~~~i~~~g~l~~L~~LL~~~~~--~v~~~A~~aL~nl~a~~~------------ 348 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKT--NIQKEATWTMSNITAGRQ------------ 348 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTGGGGCC-CTTCSSH--HHHHHHHHHHHHHTTSCH------------
T ss_pred cCCChhhhhHHHHHHHHhh-cCCHHHHHHHhhccchHHHHHHhcCCCH--HHHHHHHHHHHHHHcCcH------------
Confidence 9999999999999999998 4566667777788999999999998886 899999999999987332
Q ss_pred HHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhh
Q 002999 591 WIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLS 670 (859)
Q Consensus 591 ~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 670 (859)
+....+.+.|++|.|+++|.++ ++.+|+.|+|+|+|++
T Consensus 349 -----------------------------------------~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 349 -----------------------------------------DQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYT 386 (510)
T ss_dssp -----------------------------------------HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 3334466789999999999995 9999999999999998
Q ss_pred hhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHH
Q 002999 671 EAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEAL 750 (859)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 750 (859)
.++.. .+...+++.|+|++|+++|++.|++++..++.+|
T Consensus 387 ~~~~~-----------------------------------------~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL 425 (510)
T 3ul1_B 387 SGGTV-----------------------------------------EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425 (510)
T ss_dssp HHCCH-----------------------------------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ccCCH-----------------------------------------HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 75321 2223578999999999999999999999999999
Q ss_pred HhhhhccCc---chhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcc
Q 002999 751 STLIIDTSK---NFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVE 804 (859)
Q Consensus 751 ~~L~~d~~~---~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~ 804 (859)
.+++.. +. ..+.....|.++||++.|.++.. |++.+++++|..+|+++|..+
T Consensus 426 ~nil~~-~~~~~~~~~~~~~iee~ggl~~ie~Lq~-~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 426 SNIFQA-AEKLGETEKLSIMIEECGGLDKIEALQR-HENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHHHHH-HHTTTCHHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHH-hHhccchHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCc
Confidence 999863 21 12344677999999999977765 799999999999999999644
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.9e-37 Score=357.80 Aligned_cols=412 Identities=16% Similarity=0.191 Sum_probs=343.7
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC--cChHHHHhcCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCCcc
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKMERIE--EIVQPLAAAGRFEPLINRLC-QGSDNVQIEMAFLVGKLTLTNSC 357 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~--~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~la~~~~~ 357 (859)
...++.+++.+. ++|++.+..|+..+++|.+.+ .....+++.|+||+||++|. +.+++++.+|+++|.|++.++..
T Consensus 75 ~~~l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 75 NWSVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp SCCHHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 346889999999 999999999999999986543 34678999999999999996 55689999999999999986644
Q ss_pred -HHHHHH-hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccC--CCCHHHHHHHHHHH
Q 002999 358 -KEHIAR-QCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSH--DASPELKELAAATI 430 (859)
Q Consensus 358 -~~~i~~-~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~--~~~~~~~~~a~~~L 430 (859)
+..+.+ +++|.|+.+|. ++.+++.|+++|+||+.+. +++..+++.|++++|+.+|.... .....+...++++|
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 555555 55799999999 8899999999999999876 77899999999999999997522 12346788999999
Q ss_pred HHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhh
Q 002999 431 ANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFL 510 (859)
Q Consensus 431 ~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL 510 (859)
.|++.+...... .....++++.|+.+|.+.+++++..++|+|.+++.++.. ....+.+.|+++.|+.+|
T Consensus 234 ~nl~~~~~~~~~--------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~---~~~~v~~~g~i~~Lv~lL 302 (529)
T 3tpo_A 234 SNLCRNKNPAPP--------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE---RIEMVVKKGVVPQLVKLL 302 (529)
T ss_dssp HHHHCCCTTCCC--------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH---HHHHHHTTTCHHHHHHHH
T ss_pred HHHHhcccchhh--------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh---hHHHHHhccchHHHHHHh
Confidence 999988765443 233467899999999999999999999999999988653 356788999999999999
Q ss_pred cCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHH
Q 002999 511 EHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIK 590 (859)
Q Consensus 511 ~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~ 590 (859)
.+++..++..|+++|++++ ..++.....+...|+++.|+.+|.+++. .++..|+++|+||+.++.
T Consensus 303 ~~~~~~v~~~a~~aL~nl~-~~~~~~~~~i~~~g~l~~L~~LL~~~~~--~i~~~a~~aL~nl~~~~~------------ 367 (529)
T 3tpo_A 303 GATELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKT--NIQKEATWTMSNITAGRQ------------ 367 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTGGGGHHHHTTCSSH--HHHHHHHHHHHHHHTSCH------------
T ss_pred cCCChhHHHHHHHHHHHHH-ccchHHHHHHhhcccHHHHHHHHcCCCH--HHHHHHHHHHHHHhcccH------------
Confidence 9999999999999999998 5566677778888999999999998886 899999999999987333
Q ss_pred HHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhh
Q 002999 591 WIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLS 670 (859)
Q Consensus 591 ~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 670 (859)
+....+.+.|++|.|+.+|.++ ++.+|..|+|+|+|++
T Consensus 368 -----------------------------------------~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 368 -----------------------------------------DQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYT 405 (529)
T ss_dssp -----------------------------------------HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 3334466789999999999995 9999999999999998
Q ss_pred hhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHH
Q 002999 671 EAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEAL 750 (859)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 750 (859)
.++.. .+...+++.|+|++|+++|++.|++++..++.+|
T Consensus 406 ~~~~~-----------------------------------------~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL 444 (529)
T 3tpo_A 406 SGGTV-----------------------------------------EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 444 (529)
T ss_dssp HHSCH-----------------------------------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCCH-----------------------------------------HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 75321 2223578999999999999999999999999999
Q ss_pred HhhhhccCc---chhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcc
Q 002999 751 STLIIDTSK---NFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVE 804 (859)
Q Consensus 751 ~~L~~d~~~---~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~ 804 (859)
.+++.- +. ..+.....|.++||++.|..+.. |++.+++++|..+|+++|..+
T Consensus 445 ~nil~~-~~~~~~~~~~~~~iee~ggl~~ie~Lq~-~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 445 SNIFQA-AEKLGETEKLSIMIEECGGLDKIEALQR-HENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp HHHHHH-HHTTTCHHHHHHHHHHTTCHHHHTGGGG-CSSHHHHHHHHHHHHHHC---
T ss_pred HHHHHH-hHhccChHHHHHHHHHCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCc
Confidence 999863 21 12334567999999999977765 799999999999999999643
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.1e-35 Score=337.10 Aligned_cols=389 Identities=12% Similarity=0.066 Sum_probs=321.0
Q ss_pred hhCchHHHHHHhcCCCHHHHHHHHHHHHHhcc-ChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC--C
Q 002999 238 EEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCI-DEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI--E 314 (859)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~ 314 (859)
..+.++.||.+|.+++.+++..|+.+|.+++. +++++..|. ..|+||.||++|+ ++++.+++.|+++|.||+.. +
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~-~~G~Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVR-KLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHTSSSCH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH-HcCCcHHHHHHHC-CCCHHHHHHHHHHHHHHHccCCH
Confidence 35789999999999999999999999999996 677888887 5899999999999 89999999999999999974 7
Q ss_pred cChHHHHhcCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC-------------------
Q 002999 315 EIVQPLAAAGRFEPLINRLCQ-GSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS------------------- 374 (859)
Q Consensus 315 ~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~------------------- 374 (859)
+|+..+++.|+||+||.+|.+ .+.+++.+++.+|++|+.++++|..|.++|+++|+++|.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 899999999999999999987 578899999999999999999999998888999999871
Q ss_pred -ChhHHHHHHHHHHHhhCCCc-chHHHHHc-CcHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhcCCCc-------cc
Q 002999 375 -KPAGRAASLKALYNLSGLDD-NATILVDS-ALLPALTDILFKS---HDASPELKELAAATIANVVSNPGC-------WE 441 (859)
Q Consensus 375 -~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~-G~i~~Lv~lL~~~---~~~~~~~~~~a~~~L~nL~~~~~~-------~~ 441 (859)
++.++++|+++|+|||..++ ++..|++. |+++.|+.+|++. .+.+...+++|+++|+||+..... +.
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 36899999999999999884 58999985 6678999999752 334568999999999999876210 00
Q ss_pred c----------cccccccCcccccchHHHHHHhhc-CCChHHHHHHHHHHHHhccCChh-HHHHHHHHhhCCCHHHHHHh
Q 002999 442 L----------ASADKLGHSMQSESIVSSLLGLLS-GVSPQCQVSTLRILCGIASSPQA-AESVATHIKSGDGIKYIIQF 509 (859)
Q Consensus 442 ~----------~~~~~~~~~l~~~~~i~~Ll~LL~-~~~~~~~~~a~~aL~~La~~~~~-~~~~~~~i~~~g~i~~Lv~l 509 (859)
. .....+...+...++++.|+.+|. ..++.+++.|+++|.|||.+... ...++..+.+.+|++.|+.|
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 0 001122345667788999999995 45789999999999999876421 12445677888999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCC------chhHHHHHHHHHHHhcCCcHHH-HH
Q 002999 510 LEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQS------ANCERSDAACILANIQLSEEEV-KT 582 (859)
Q Consensus 510 L~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~------~~~~~~~A~~~L~~L~~~~~~~-~~ 582 (859)
|.+++.+++..|+++|+||+.+. .++..| ..|+++.||++|.+++. ..++...|+++|+||...+... +.
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~--~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~ 440 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDA--RNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKK 440 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTC--SCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCh--hHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999998433 344555 45999999999998742 1367889999999998777666 88
Q ss_pred HHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCc
Q 002999 583 LLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRL 642 (859)
Q Consensus 583 l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~ 642 (859)
+.+.|+++.|+.++.+.. +...+.+.+..+|.++.. +++.+..+.+.|+
T Consensus 441 I~~~g~I~~Lv~LL~s~~---------~~~~v~k~Aa~vL~nl~~--~~elr~~~kk~G~ 489 (584)
T 3l6x_A 441 LRETQGIEKLVLINKSGN---------RSEKEVRAAALVLQTIWG--YKELRKPLEKEGW 489 (584)
T ss_dssp HHHTTHHHHHHHHHTCSS---------SCHHHHHHHHHHHHHHHT--SHHHHHHHHTTTC
T ss_pred HHHCCChHHHHHHHhCCC---------CChHHHHHHHHHHHHHHc--CHHHHHHHHHcCC
Confidence 999999999999997621 122357888888888874 7899998888775
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.1e-35 Score=337.14 Aligned_cols=377 Identities=12% Similarity=0.082 Sum_probs=311.6
Q ss_pred hcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhccc-CcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC-
Q 002999 193 NAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAK-DEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID- 270 (859)
Q Consensus 193 ~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~- 270 (859)
..+.||.||.+|.+++. ++|..|+++|.+|+. ++++|..|++.|+||.||.+|++++.++++.|+++|.+|+..
T Consensus 46 ~~~~i~~LV~~L~s~~~----~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLD----AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCHHHHHHHTTCSCH----HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred ccccHHHHHHHHCCCCH----HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 45789999999999887 999999999999997 589999999999999999999999999999999999999984
Q ss_pred -hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhc---------------
Q 002999 271 -EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLC--------------- 334 (859)
Q Consensus 271 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~--------------- 334 (859)
++++..|. ..|+|+.||++|+...+.++++.|+.+|+||+.+++++..|++ |+||+|+++|.
T Consensus 122 ~~~nk~~I~-~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 122 DQDNKIAIK-NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp CHHHHHHHH-HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC--------
T ss_pred CHHHHHHHH-HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccc
Confidence 78898887 4899999999999446888999999999999999999999996 57999999872
Q ss_pred ---cCChHHHHHHHHHHHHhcCCCcc-HHHHHH-hh-HHHHHHHhC--------ChhHHHHHHHHHHHhhCCCc------
Q 002999 335 ---QGSDNVQIEMAFLVGKLTLTNSC-KEHIAR-QC-AKVLVELLS--------KPAGRAASLKALYNLSGLDD------ 394 (859)
Q Consensus 335 ---~~~~~~~~~aa~~L~~la~~~~~-~~~i~~-~g-i~~Lv~lL~--------~~~~~~~a~~aL~~Ls~~~~------ 394 (859)
..+++++.+++++|.||+.++++ |..|.+ +| +++||.+|+ +...++.|+++|+|||...+
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~ 279 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA 279 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch
Confidence 22579999999999999998755 777764 45 589999886 45688999999999997621
Q ss_pred --------------------chHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccc
Q 002999 395 --------------------NATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQS 454 (859)
Q Consensus 395 --------------------~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 454 (859)
....+.+.++++.|+.+|... ....+++.|+++|.||+.+...+.. .....+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s--~~~~v~E~Aa~AL~nL~ag~~~~~~----~~~~~v~~ 353 (584)
T 3l6x_A 280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES--KTPAILEASAGAIQNLCAGRWTYGR----YIRSALRQ 353 (584)
T ss_dssp CC--------------CCCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHSSCSHHHH----HHHHHHTS
T ss_pred hhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCccccH----HHHHHHHH
Confidence 112233446678899999752 4579999999999999986533221 00113566
Q ss_pred cchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCC--------ChhHHHHHHHHHH
Q 002999 455 ESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHP--------EVEHRTYAFRLTR 526 (859)
Q Consensus 455 ~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~~v~~~A~~~L~ 526 (859)
+++++.|+.||.++++++++.++++|.||+.++.+. ..| ..|+++.|+.+|.++ +.++...|+++|.
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~----~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~ 428 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDARNK----ELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH----HHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH----HHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHH
Confidence 889999999999999999999999999999987653 334 569999999999887 3577889999999
Q ss_pred HHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhc
Q 002999 527 ILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEAT 587 (859)
Q Consensus 527 ~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g 587 (859)
||. ..+.+.+..+.+.|+|+.|+.++++++....++..|+++|++|..+..-...+.+.|
T Consensus 429 NL~-a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G 488 (584)
T 3l6x_A 429 EVI-AENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488 (584)
T ss_dssp HHH-TTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTT
T ss_pred HHh-cCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcC
Confidence 998 456778888889999999999999863224889999999999998444434444433
No 13
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.5e-34 Score=328.98 Aligned_cols=375 Identities=13% Similarity=0.101 Sum_probs=301.8
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccChh-hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChH
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEA-YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQ 318 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~ 318 (859)
.+|.|+++|++++++.+..|+.+|.+|+.+++ .+..+. ..|+||.||++|+ ++++.++..|+++|.||+.. ++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVY-QLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHH-HTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH-HcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 58999999999999999999999999997654 465776 5999999999999 88999999999999999976 89999
Q ss_pred HHHhcCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHh--------C----------ChhHH
Q 002999 319 PLAAAGRFEPLINRLC-QGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELL--------S----------KPAGR 379 (859)
Q Consensus 319 ~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL--------~----------~~~~~ 379 (859)
.+++.|+||+|+++|. +++++++..++++|+||+.++++|..+.++++|+|+++| + ++.+.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999998 889999999999999999998899877676679999999 3 23455
Q ss_pred HHHHHHHHHhhCCCcchHHHHHc-CcHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhcCCC-----c-----------
Q 002999 380 AASLKALYNLSGLDDNATILVDS-ALLPALTDILFKS---HDASPELKELAAATIANVVSNPG-----C----------- 439 (859)
Q Consensus 380 ~~a~~aL~~Ls~~~~~~~~i~~~-G~i~~Lv~lL~~~---~~~~~~~~~~a~~~L~nL~~~~~-----~----------- 439 (859)
+.|+++|+|||.+++++..+++. |++++|+.+|.+. .+.+..++++|+.+|.||+.... .
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 69999999999987889999998 9999999999851 12345688999999999973210 0
Q ss_pred ---------ccc-----------cc------cccccCcccccchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhH-H
Q 002999 440 ---------WEL-----------AS------ADKLGHSMQSESIVSSLLGLLSGV-SPQCQVSTLRILCGIASSPQAA-E 491 (859)
Q Consensus 440 ---------~~~-----------~~------~~~~~~~l~~~~~i~~Ll~LL~~~-~~~~~~~a~~aL~~La~~~~~~-~ 491 (859)
+.. .+ ...+.+.+...++++.|+.+|.++ ++.+++.++|+|+|||.+.... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 000 00 012234577889999999999754 6899999999999999864321 2
Q ss_pred HH-HHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCC----chhHHHHH
Q 002999 492 SV-ATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQS----ANCERSDA 566 (859)
Q Consensus 492 ~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~----~~~~~~~A 566 (859)
.+ +..+.+.||++.|+.+|.+++.+++..|+++|.+|+. +.+++..+.. |++++|+++|.+++. ..++...+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~--~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc--CHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 33 4456689999999999999999999999999999984 3455555554 899999999998754 11345566
Q ss_pred HHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHH
Q 002999 567 ACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIF 646 (859)
Q Consensus 567 ~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~L 646 (859)
+++|+|+..+ +++....+.+.|++|.|
T Consensus 398 l~~l~ni~~~-----------------------------------------------------~~~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 398 CYTVRNLMAS-----------------------------------------------------QPQLAKQYFSSSMLNNI 424 (457)
T ss_dssp HHHHHHHHTT-----------------------------------------------------CTHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHhc-----------------------------------------------------CHHHHHHHHHcCCHHHH
Confidence 6666665441 33455567788999999
Q ss_pred HHhhcCCChHHHHHHHHHHhhhhhhhc
Q 002999 647 RDQLSFPSKARVKQLAAHGLKNLSEAG 673 (859)
Q Consensus 647 v~lL~~~~~~~vk~~Aa~aL~~ls~~~ 673 (859)
++++.++.++++++.|++.|.++..+.
T Consensus 425 ~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 425 INLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 999998328999999999999987654
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.1e-33 Score=329.61 Aligned_cols=408 Identities=16% Similarity=0.190 Sum_probs=342.7
Q ss_pred ChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC--cChHHHHhcCChHHHHHHhccCC-hHHHHHHHHHHHHhcCC-Ccc
Q 002999 282 GALVLLSSMTGNLELPALSNLADEVFKKMERIE--EIVQPLAAAGRFEPLINRLCQGS-DNVQIEMAFLVGKLTLT-NSC 357 (859)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~--~~~~~i~~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~la~~-~~~ 357 (859)
..++.|+.+|. ++++.++..|+.+|.++...+ .+...+++.|++|.|+.+|.+++ +.++..++++|.+++.+ .++
T Consensus 74 ~~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35899999998 889999999999999996543 67888999999999999998876 99999999999999986 455
Q ss_pred HHHHHH-hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002999 358 KEHIAR-QCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANV 433 (859)
Q Consensus 358 ~~~i~~-~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL 433 (859)
+..+.+ ++++.|+.+|. ++.++..|+++|.+|+... .++..+.+.|++++|+.+|.. +.+..++..|+++|.+|
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~--~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE--HTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 666655 55799999998 8899999999999999876 578889999999999999953 35689999999999999
Q ss_pred hcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCC
Q 002999 434 VSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHP 513 (859)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 513 (859)
+.+.+... .....++++.|+.+|.+.+++++..++++|.+|+..+.. ..+.+.+.|+++.|+.+|.++
T Consensus 231 ~~~~~~~~---------~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~---~~~~~~~~g~v~~Lv~lL~~~ 298 (528)
T 4b8j_A 231 CRGKPQPS---------FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTND---KIQAVIEAGVCPRLVELLLHP 298 (528)
T ss_dssp HCSSSCCC---------HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHH---HHHHHHHTTCHHHHHHHTTCS
T ss_pred HcCCCCCc---------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH---HHHHHHHcCHHHHHHHHHcCC
Confidence 98864433 234588999999999999999999999999999987643 245677899999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC-CCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHH
Q 002999 514 EVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN-QSANCERSDAACILANIQLSEEEVKTLLEATFIKWI 592 (859)
Q Consensus 514 ~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L 592 (859)
++.++..|+++|.+|+ ..++.....+.+.|+++.|+.+|.++ +. .++..|+++|+||+.++.
T Consensus 299 ~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~--~v~~~A~~~L~nl~~~~~-------------- 361 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIV-TGDDAQTQCIIDHQALPCLLSLLTQNLKK--SIKKEACWTISNITAGNK-------------- 361 (528)
T ss_dssp CHHHHHHHHHHHHHHT-TSCHHHHHHHHTTTHHHHHHHHHHSCCCH--HHHHHHHHHHHHHHTSCH--------------
T ss_pred ChhHHHHHHHHHHHHH-cCCHHHHHHHHHhhhHHHHHHHHcCCCcH--HHHHHHHHHHHHHHCCCH--------------
Confidence 9999999999999998 44556666777789999999999988 54 889999999999886322
Q ss_pred HHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 593 VITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 593 ~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
+....+.+.|++|.|+++|.++ ++.+|..|+++|+|++..
T Consensus 362 ---------------------------------------~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 362 ---------------------------------------DQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp ---------------------------------------HHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 2223355678899999999985 999999999999999876
Q ss_pred cccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHh
Q 002999 673 GRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALST 752 (859)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 752 (859)
+.. ....++++.|++++|+++|.+++++++..|+.+|.+
T Consensus 402 ~~~-----------------------------------------~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~ 440 (528)
T 4b8j_A 402 GSH-----------------------------------------DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLEN 440 (528)
T ss_dssp SCH-----------------------------------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCH-----------------------------------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 311 112346688999999999999999999999999999
Q ss_pred hhhccCcc--------hhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcc
Q 002999 753 LIIDTSKN--------FKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVE 804 (859)
Q Consensus 753 L~~d~~~~--------~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~ 804 (859)
|+.. ... .+.....|.++||++.|..+.. |++++++++|.++++++|..+
T Consensus 441 l~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~-~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 441 ILKV-GETDKTLAAGDVNVFSQMIDEAEGLEKIENLQS-HDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHH-HHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHCC--
T ss_pred HHHH-HHHhhhcccccccHHHHHHHHCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCc
Confidence 9975 221 1135788999999999999886 799999999999999999654
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.2e-33 Score=326.62 Aligned_cols=406 Identities=14% Similarity=0.092 Sum_probs=339.5
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcch--HHHHHhhCchHHHHHHhcC-CCHHHHHHHHHHHHHhccC-h
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEES--KKIMLEEGVTKSVIHSLIG-NSEKEKEYAVKLLLEFCID-E 271 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~--r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~-~ 271 (859)
.|+.+|+.+++++. +.|..|+..++.|.+.+.+ .+.|++.|+||.||.+|++ ++++++..|+++|.+++.. +
T Consensus 58 ~i~~~v~~l~s~d~----~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 58 SVEDIVKGINSNNL----ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp CHHHHHHHHTSSCH----HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred hHHHHHHHhcCCCH----HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 47899999999998 9999999999997665433 6788999999999999975 4588999999999999765 5
Q ss_pred hhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCC-----hHHHHHHH
Q 002999 272 AYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGS-----DNVQIEMA 345 (859)
Q Consensus 272 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~-----~~~~~~aa 345 (859)
+.++.+. +.|+||.|+.+|+ ++++.+++.|+++|.||+.+ +.++..+.+.|++++|+.+|...+ ...+..++
T Consensus 134 e~~~~vv-~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 134 EQTKAVV-DGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp HHHHHHH-HTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHHH-HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 6777776 5999999999999 89999999999999999975 567888999999999999997644 45678899
Q ss_pred HHHHHhcCCCccHH-H-HHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc-chHHHHHcCcHHHHHHHHhccCCCCH
Q 002999 346 FLVGKLTLTNSCKE-H-IARQCAKVLVELLS--KPAGRAASLKALYNLSGLDD-NATILVDSALLPALTDILFKSHDASP 420 (859)
Q Consensus 346 ~~L~~la~~~~~~~-~-i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~ 420 (859)
++|.+++.+..... . ...++++.|+++|. +++++..|+++|++|+..+. ....+.+.|+++.|+.+|.+ .+.
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~ 288 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TEL 288 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC---SCH
T ss_pred HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC---CCh
Confidence 99999998765532 2 33556799999999 88999999999999999885 45677889999999999965 567
Q ss_pred HHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhC
Q 002999 421 ELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSG 500 (859)
Q Consensus 421 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~ 500 (859)
.++..++.+|.|++.+++.... .+.+.|+++.|+.+|+++++.++..++|+|++|+.+.. ..+..+.+.
T Consensus 289 ~v~~~al~aL~nl~~~~~~~~~--------~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~---~~~~~v~~~ 357 (510)
T 3ul1_B 289 PIVTPALRAIGNIVTGTDEQTQ--------KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ---DQIQQVVNH 357 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHH--------HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH---HHHHHHHHT
T ss_pred hhhhHHHHHHHHhhcCCHHHHH--------HHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH---HHHHHHHhc
Confidence 8999999999999887765443 47788999999999999999999999999999998764 346778899
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH
Q 002999 501 DGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEV 580 (859)
Q Consensus 501 g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 580 (859)
|+++.|+.++.+++.++|..|+++|.|++...+.+....+.+.|++++|+.+|++.+. +++..++.+|.||......
T Consensus 358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~--~i~~~~L~aL~nil~~~~~- 434 (510)
T 3ul1_B 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT--KIIQVILDAISNIFQAAEK- 434 (510)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH--HHHHHHHHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhHh-
Confidence 9999999999999999999999999999866667777788888999999999999886 8888888888877530000
Q ss_pred HHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHH
Q 002999 581 KTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQ 660 (859)
Q Consensus 581 ~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~ 660 (859)
. .........+.+.|++..+-.|..++ +.++++
T Consensus 435 -----------------------~-----------------------~~~~~~~~~iee~ggl~~ie~Lq~~~-n~~i~~ 467 (510)
T 3ul1_B 435 -----------------------L-----------------------GETEKLSIMIEECGGLDKIEALQRHE-NESVYK 467 (510)
T ss_dssp -----------------------T-----------------------TCHHHHHHHHHHTTHHHHHHHGGGCS-SHHHHH
T ss_pred -----------------------c-----------------------cchHHHHHHHHHcCcHHHHHHHHcCC-CHHHHH
Confidence 0 00122344577889999998888886 999999
Q ss_pred HHHHHhhhhhh
Q 002999 661 LAAHGLKNLSE 671 (859)
Q Consensus 661 ~Aa~aL~~ls~ 671 (859)
.|...|..+..
T Consensus 468 ~A~~iie~yf~ 478 (510)
T 3ul1_B 468 ASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHCC
Confidence 99998876654
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.4e-33 Score=324.47 Aligned_cols=413 Identities=15% Similarity=0.192 Sum_probs=343.2
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC--CcChHHHHhcCChHHHHHHhccC-ChHHHHHHHHHHHHhcCCC-c
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKMERI--EEIVQPLAAAGRFEPLINRLCQG-SDNVQIEMAFLVGKLTLTN-S 356 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~la~~~-~ 356 (859)
.+.++.|+..|. ++++.++..|+.+|.++... +.++..+++.|++|.|+.+|.++ ++.++..++++|++++... +
T Consensus 86 ~~~i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 568999999999 88999999999999999754 45678899999999999999987 8999999999999999865 4
Q ss_pred cHHHHH-HhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002999 357 CKEHIA-RQCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIAN 432 (859)
Q Consensus 357 ~~~~i~-~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~n 432 (859)
.+..+. .++++.|+.+|+ ++.++..|+++|++|+... +++..+.+.|+++.|+.+|.+ .+..++..|+++|.+
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---NKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHHHHH
Confidence 455554 566899999998 8999999999999999886 678888999999999999965 567999999999999
Q ss_pred hhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcC
Q 002999 433 VVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEH 512 (859)
Q Consensus 433 L~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 512 (859)
|+.+...... .....++++.|+.+|.+.++.++..++++|.+|+..... ....+.+.|+++.|+.+|.+
T Consensus 242 L~~~~~~~~~--------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~ 310 (530)
T 1wa5_B 242 LCRGKKPQPD--------WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE---AIQAVIDVRIPKRLVELLSH 310 (530)
T ss_dssp HHCCSSSCCC--------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH---HHHHHHHTTCHHHHHHGGGC
T ss_pred HhCCCCCCCc--------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH---HHHHHHhcCcHHHHHHHHCC
Confidence 9987622221 244578999999999999999999999999999987532 34567788999999999999
Q ss_pred CChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHH
Q 002999 513 PEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWI 592 (859)
Q Consensus 513 ~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L 592 (859)
+++.++..|+++|.+++. .++.....+...|+++.|+.+|.+++. .++..|+++|++|+.++..
T Consensus 311 ~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~--~vr~~A~~aL~~l~~~~~~------------- 374 (530)
T 1wa5_B 311 ESTLVQTPALRAVGNIVT-GNDLQTQVVINAGVLPALRLLLSSPKE--NIKKEACWTISNITAGNTE------------- 374 (530)
T ss_dssp SCHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHH-------------
T ss_pred CChhhHHHHHHHHHHHHc-CCHHHHHHHHHcchHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHH-------------
Confidence 999999999999999983 445555666667999999999998865 8999999999998863222
Q ss_pred HHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 593 VITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 593 ~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
....+.+.|++|.|+++|.++ ++.+|..|+++|++++..
T Consensus 375 ----------------------------------------~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 375 ----------------------------------------QIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG 413 (530)
T ss_dssp ----------------------------------------HHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 222344678899999999885 999999999999999875
Q ss_pred cccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHh
Q 002999 673 GRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALST 752 (859)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 752 (859)
+... +....++++.|++++|+.+|.+++++++..|+.+|.+
T Consensus 414 ~~~~---------------------------------------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~ 454 (530)
T 1wa5_B 414 GLQR---------------------------------------PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454 (530)
T ss_dssp TTTC---------------------------------------THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCc---------------------------------------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3210 0122346688999999999999999999999999999
Q ss_pred hhhccCcc--------hhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcccc
Q 002999 753 LIIDTSKN--------FKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGH 806 (859)
Q Consensus 753 L~~d~~~~--------~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~ 806 (859)
|+.. ... .+.....|.++||++.|..++. +++++++++|.++|+++|..++.
T Consensus 455 l~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~-~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 455 ILKM-GEADKEARGLNINENADFIEKAGGMEKIFNCQQ-NENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp HHHH-HHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG-CSCHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHh-hhhhhhcccccccHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHCCcccc
Confidence 9975 221 1234678999999999999887 79999999999999999976543
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=8.1e-34 Score=322.96 Aligned_cols=362 Identities=13% Similarity=0.089 Sum_probs=304.1
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC-hhh
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID-EAY 273 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~ 273 (859)
.+|.|+.+|++++. ++|..|+.+|.+|+.+ +.+|..+++.|++|.|+.+|++++++++..|+++|.+|+.+ +++
T Consensus 3 ~l~~lv~~L~s~~~----~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQDE----KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CHHHHHHHHHSSCT----HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CHHHHHHHHCCCCH----HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 58999999999988 9999999999999977 66788999999999999999999999999999999999987 888
Q ss_pred hhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhc--------cC--------C
Q 002999 274 CKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLC--------QG--------S 337 (859)
Q Consensus 274 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~--------~~--------~ 337 (859)
+..|. +.|+||.|+++|+.++++++++.|+++|+||+.+++++..+++ |++|+|+.+|. ++ +
T Consensus 79 k~~i~-~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 79 KLETR-RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHH-HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHH-HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 88887 4899999999998567899999999999999999999999999 99999999993 22 3
Q ss_pred hHHHHHHHHHHHHhcCCCccHHHHHH--hhHHHHHHHhC--------ChhHHHHHHHHHHHhhCC---------------
Q 002999 338 DNVQIEMAFLVGKLTLTNSCKEHIAR--QCAKVLVELLS--------KPAGRAASLKALYNLSGL--------------- 392 (859)
Q Consensus 338 ~~~~~~aa~~L~~la~~~~~~~~i~~--~gi~~Lv~lL~--------~~~~~~~a~~aL~~Ls~~--------------- 392 (859)
+++...++++|+||+.+++++..+.+ +++++|+.+|+ +...++.|+.+|+||+..
T Consensus 157 ~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 55667999999999998888888875 55799999997 346788999999999732
Q ss_pred ------------------------------------CcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 002999 393 ------------------------------------DDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSN 436 (859)
Q Consensus 393 ------------------------------------~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~ 436 (859)
+...+.+.+.|+++.|+.+|.+. .++.+++.|+++|.||+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS--KKDATLEACAGALQNLTAS 314 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc--CCHHHHHHHHHHHHHhccC
Confidence 11223456678899999999763 4579999999999999987
Q ss_pred CCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCCh-
Q 002999 437 PGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEV- 515 (859)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~- 515 (859)
...+... .....+...++++.|+++|.+++.+++..++|+|.+|+.++.. +..| ..|++++|+++|.++++
T Consensus 315 ~~~~~~~---~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~----~~~i-~~~~i~~Lv~lL~~~~~~ 386 (457)
T 1xm9_A 315 KGLMSSG---MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL----HRVM-GNQVFPEVTRLLTSHTGN 386 (457)
T ss_dssp SSSHHHH---HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG----HHHH-HHHTHHHHHHTTTSCCSC
T ss_pred cCcchHH---HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH----HHHH-HHhhhHHHHHhccCCCCC
Confidence 6543210 0001244689999999999999999999999999999998654 3334 34899999999998753
Q ss_pred -----hHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC-CCchhHHHHHHHHHHHhcCC
Q 002999 516 -----EHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN-QSANCERSDAACILANIQLS 576 (859)
Q Consensus 516 -----~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~~~A~~~L~~L~~~ 576 (859)
++...++++|.++.. .+.+....+.+.|++++|++++.++ +. +++..|+++|.++..+
T Consensus 387 ~~~~~~v~~~~l~~l~ni~~-~~~~~~~~i~~~g~l~~L~~L~~~~~~~--~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 387 TSNSEDILSSACYTVRNLMA-SQPQLAKQYFSSSMLNNIINLCRSSASP--KAAEAARLLLSDMWSS 450 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHT-TCTHHHHHHCCHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTSSS
T ss_pred CCCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHcCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHcc
Confidence 577889999999983 4456778888889999999999998 55 8999999999999864
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.5e-33 Score=322.86 Aligned_cols=407 Identities=13% Similarity=0.088 Sum_probs=339.2
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCc--chHHHHHhhCchHHHHHHhcC-CCHHHHHHHHHHHHHhccCh
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDE--ESKKIMLEEGVTKSVIHSLIG-NSEKEKEYAVKLLLEFCIDE 271 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~--~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~ 271 (859)
..++.+++.+.+++. +.+..|+..++++...+ ...+.+++.|+||.|+.+|++ +++..+..|+++|.+++...
T Consensus 76 ~~l~~lv~~l~s~d~----~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~ 151 (529)
T 3tpo_A 76 WSVEDIVKGINSNNL----ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 151 (529)
T ss_dssp CCHHHHHHHHTSSCH----HHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCH----HHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC
Confidence 357899999999988 99999999999876553 346788999999999999975 45889999999999999865
Q ss_pred -hhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCC-----hHHHHHH
Q 002999 272 -AYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGS-----DNVQIEM 344 (859)
Q Consensus 272 -~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~-----~~~~~~a 344 (859)
+.+..+. ..|+||.|+.+|. ++++.+++.|+++|.||+.+ ++++..+++.|++++|+.+|...+ ......+
T Consensus 152 ~~~~~~vv-~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a 229 (529)
T 3tpo_A 152 SEQTKAVV-DGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 229 (529)
T ss_dssp HHHHHHHH-HTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHH
Confidence 4555665 5999999999999 89999999999999999975 677889999999999999997543 4567889
Q ss_pred HHHHHHhcCCCccH--HHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc-chHHHHHcCcHHHHHHHHhccCCCC
Q 002999 345 AFLVGKLTLTNSCK--EHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDD-NATILVDSALLPALTDILFKSHDAS 419 (859)
Q Consensus 345 a~~L~~la~~~~~~--~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~ 419 (859)
+++|.+++.+.... .....+++|.|+.+|. ++.++..|+++|.+|+..+. ....+++.|+++.|+.+|.+ .+
T Consensus 230 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~ 306 (529)
T 3tpo_A 230 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TE 306 (529)
T ss_dssp HHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC---SC
T ss_pred HHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC---CC
Confidence 99999999876543 2334566799999999 88999999999999999884 45777889999999999965 56
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhh
Q 002999 420 PELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKS 499 (859)
Q Consensus 420 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~ 499 (859)
..++..|+.+|.|++.+++.... .+...|+++.|+.+|.++++.++..++|+|++|+.+.. .....+.+
T Consensus 307 ~~v~~~a~~aL~nl~~~~~~~~~--------~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~---~~~~~v~~ 375 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTGTDEQTQ--------KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ---DQIQQVVN 375 (529)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHH--------HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH---HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccchHHHH--------HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH---HHHHHHHh
Confidence 79999999999999987755443 47788999999999999999999999999999998764 34567889
Q ss_pred CCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHH
Q 002999 500 GDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEE 579 (859)
Q Consensus 500 ~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~ 579 (859)
.|+++.|+.++.+++.+++..|+++|.|++...+.+....+.+.|++++|+.+|.+.+. +++..++.+|.||....
T Consensus 376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~--~i~~~~L~aL~nil~~~-- 451 (529)
T 3tpo_A 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT--KIIQVILDAISNIFQAA-- 451 (529)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH--HHHHHHHHHHHHHHHHH--
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999866667777788888999999999999886 88888888888765300
Q ss_pred HHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHH
Q 002999 580 VKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVK 659 (859)
Q Consensus 580 ~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk 659 (859)
... .........+.+.|++..+-.|..++ +.+++
T Consensus 452 -----------------~~~----------------------------~~~~~~~~~iee~ggl~~ie~Lq~~~-n~~i~ 485 (529)
T 3tpo_A 452 -----------------EKL----------------------------GETEKLSIMIEECGGLDKIEALQRHE-NESVY 485 (529)
T ss_dssp -----------------HTT----------------------------TCHHHHHHHHHHTTCHHHHTGGGGCS-SHHHH
T ss_pred -----------------Hhc----------------------------cChHHHHHHHHHCCcHHHHHHHHcCC-CHHHH
Confidence 000 00122334577889999988888886 99999
Q ss_pred HHHHHHhhhhhh
Q 002999 660 QLAAHGLKNLSE 671 (859)
Q Consensus 660 ~~Aa~aL~~ls~ 671 (859)
..|...|..+..
T Consensus 486 ~~A~~iie~yf~ 497 (529)
T 3tpo_A 486 KASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHCC
Confidence 999988876653
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=321.00 Aligned_cols=358 Identities=18% Similarity=0.126 Sum_probs=286.9
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCC------------CHHHHHHHHHH
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGN------------SEKEKEYAVKL 263 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~------------~~~~~~~A~~~ 263 (859)
.++.|+..+.+.+. . ...+.|..+..+++.|..+++.|++|.||.+|+.. +++.+..|+++
T Consensus 33 ~~~~l~~~~~~~~~----~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~a 105 (458)
T 3nmz_A 33 MVYSLLSMLGTHDK----D---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAA 105 (458)
T ss_dssp ------------CC----H---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCH----H---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHH
Confidence 36778888887776 4 47888899999988999999999999999999963 37999999999
Q ss_pred HHHhccChhhhhHhhhhhChH----------HHHHHhhcCCC-ChH-----HHH-------HHHHHHHHhcCCCcChHHH
Q 002999 264 LLEFCIDEAYCKSVASEKGAL----------VLLSSMTGNLE-LPA-----LSN-------LADEVFKKMERIEEIVQPL 320 (859)
Q Consensus 264 L~~Ls~~~~~~~~i~~~~g~i----------~~Lv~lL~~~~-~~~-----~~~-------~a~~aL~nL~~~~~~~~~i 320 (859)
|.|++...........+.|++ +.++++++... +.+ +.+ +|+++|.|++.++++|..|
T Consensus 106 l~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i 185 (458)
T 3nmz_A 106 LHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM 185 (458)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999998643322332346666 66778787221 112 334 8999999999999999999
Q ss_pred HhcCChHHHHHHhcc-----------CChHHHHHHHHHHHHhcCCCc-cHHHHH-Hhh-HHHHHHHhC--ChhHHHHHHH
Q 002999 321 AAAGRFEPLINRLCQ-----------GSDNVQIEMAFLVGKLTLTNS-CKEHIA-RQC-AKVLVELLS--KPAGRAASLK 384 (859)
Q Consensus 321 ~~~G~i~~Lv~lL~~-----------~~~~~~~~aa~~L~~la~~~~-~~~~i~-~~g-i~~Lv~lL~--~~~~~~~a~~ 384 (859)
++.|++++|+.+|.. .++.++.+++++|.||+.+++ ++..+. .+| +|+|+++|+ ++++++.|++
T Consensus 186 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 265 (458)
T 3nmz_A 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 265 (458)
T ss_dssp HHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999942 346789999999999998775 676664 466 899999999 8899999999
Q ss_pred HHHHhhCC-C-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CCCcccccccccccCccc-ccchHHH
Q 002999 385 ALYNLSGL-D-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVS-NPGCWELASADKLGHSMQ-SESIVSS 460 (859)
Q Consensus 385 aL~~Ls~~-~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~~~~~~~~l~-~~~~i~~ 460 (859)
+|+||+.. + +++..+++.|++|+|+++|.. ..+..+++.|+.+|+||+. +++++. .+. ..|+++.
T Consensus 266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~--s~~~~v~~~A~~aL~nLs~~~~~nk~---------~I~~~~Gal~~ 334 (458)
T 3nmz_A 266 VLRNLSWRADVNSKKTLREVGSVKALMECALE--VKKESTLKSVLSALWNLSAHCTENKA---------DICAVDGALAF 334 (458)
T ss_dssp HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT--CCSHHHHHHHHHHHHHHHHHCHHHHH---------HHHHSTTHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc--CCCHHHHHHHHHHHHHHccCCHHHHH---------HHHHhcCcHHH
Confidence 99999985 3 688999999999999998754 2457899999999999998 434443 244 7899999
Q ss_pred HHHhhcCCCh----HHHHHHHHHHHHhcc---CChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc
Q 002999 461 LLGLLSGVSP----QCQVSTLRILCGIAS---SPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIG 533 (859)
Q Consensus 461 Ll~LL~~~~~----~~~~~a~~aL~~La~---~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~ 533 (859)
|+.+|.++++ ++++.++++|.+|+. ... +.++.+.+.|+++.|+.+|.+++.+++..|+++|++|+ ..+
T Consensus 335 Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~---~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa-~~~ 410 (458)
T 3nmz_A 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE---DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-ARN 410 (458)
T ss_dssp HHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH-SSC
T ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH---HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH-cCC
Confidence 9999987654 599999999999996 332 34677899999999999999999999999999999998 456
Q ss_pred HHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCc
Q 002999 534 QDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSE 577 (859)
Q Consensus 534 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~ 577 (859)
.+.+..+.+.|++++|+.+|.+++. .++..|+++|.||+.++
T Consensus 411 ~~~~~~i~~~G~I~~Lv~LL~s~~~--~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 411 PKDQEALWDMGAVSMLKNLIHSKHK--MIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHHTHHHHHHTTTTCSSH--HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHHcCC
Confidence 7778888888999999999998876 88999999999998855
No 20
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=318.00 Aligned_cols=362 Identities=17% Similarity=0.170 Sum_probs=284.8
Q ss_pred HHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCC--------cchHHHHHHHHHHH
Q 002999 153 VSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKS--------VGTILRSKALMALL 224 (859)
Q Consensus 153 i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~--------~~~~~~~~al~~L~ 224 (859)
++.+++.+.+.+++ +..+.|..+.. ++..|..+++.|++|.||++|+..+.+ -+.+++..|+++|.
T Consensus 34 ~~~l~~~~~~~~~~-----~~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD-----DMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp -----------CCH-----HHHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH-----HHHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 55666667654433 36677777766 556788999999999999999964320 12399999999999
Q ss_pred hcccC-cchHHHHHhhCch----------HHHHHHhcCCC--HH-----HHH-------HHHHHHHHhccChhhhhHhhh
Q 002999 225 SMAKD-EESKKIMLEEGVT----------KSVIHSLIGNS--EK-----EKE-------YAVKLLLEFCIDEAYCKSVAS 279 (859)
Q Consensus 225 ~L~~~-~~~r~~i~~~g~i----------~~Lv~lL~~~~--~~-----~~~-------~A~~~L~~Ls~~~~~~~~i~~ 279 (859)
|++.. ++......+.|++ +.+++++.+.. .+ +++ .|+++|.+++.++++|..|.
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~- 186 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMN- 186 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHH-
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 99987 6777777777777 66777776642 12 334 89999999999999999998
Q ss_pred hhChHHHHHHhhcC----------CCChHHHHHHHHHHHHhcCCCc-ChHHHHh-cCChHHHHHHhccCChHHHHHHHHH
Q 002999 280 EKGALVLLSSMTGN----------LELPALSNLADEVFKKMERIEE-IVQPLAA-AGRFEPLINRLCQGSDNVQIEMAFL 347 (859)
Q Consensus 280 ~~g~i~~Lv~lL~~----------~~~~~~~~~a~~aL~nL~~~~~-~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~aa~~ 347 (859)
+.|++++|+.+|.. +.++.++..|+++|.||+.+++ ++..+.. .|+||+|+.+|.+++++++..++++
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 266 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 49999999999951 1346789999999999998765 5656654 5669999999999999999999999
Q ss_pred HHHhcCC--CccHHHHHH-hhHHHHHHHh-C--ChhHHHHHHHHHHHhhC-CCcchHHHH-HcCcHHHHHHHHhccCCC-
Q 002999 348 VGKLTLT--NSCKEHIAR-QCAKVLVELL-S--KPAGRAASLKALYNLSG-LDDNATILV-DSALLPALTDILFKSHDA- 418 (859)
Q Consensus 348 L~~la~~--~~~~~~i~~-~gi~~Lv~lL-~--~~~~~~~a~~aL~~Ls~-~~~~~~~i~-~~G~i~~Lv~lL~~~~~~- 418 (859)
|+||+.. +++|..+.+ +|+++|+++| + ++.+++.|+++|+||+. .++++..+. ..|++|.|+.+|.+..+.
T Consensus 267 L~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346 (458)
T ss_dssp HHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcc
Confidence 9999985 467888876 5579999975 4 77899999999999999 558888888 789999999999763221
Q ss_pred CHHHHHHHHHHHHHhhc---CCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 002999 419 SPELKELAAATIANVVS---NPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVAT 495 (859)
Q Consensus 419 ~~~~~~~a~~~L~nL~~---~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~ 495 (859)
...+++.|+++|+||+. ..+... +.+.+.|+++.|+.+|++++.++++.|+|+|+||+.... +.+.
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~~~~~--------~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~---~~~~ 415 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATNEDHR--------QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP---KDQE 415 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHH--------HHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCH---HHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHH--------HHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCH---HHHH
Confidence 12589999999999996 333322 257789999999999999999999999999999996532 3467
Q ss_pred HHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 002999 496 HIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERI 532 (859)
Q Consensus 496 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~ 532 (859)
.|.+.|+++.|+.+|++++.+++..|+++|.+|+.+.
T Consensus 416 ~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 7889999999999999999999999999999998443
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=9.8e-32 Score=306.31 Aligned_cols=408 Identities=16% Similarity=0.185 Sum_probs=335.2
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhcC--CCcChHHHHhc-CChHHHHHHhccC-ChHHHHHHHHHHHHhcCCC-cc
Q 002999 283 ALVLLSSMTGNLELPALSNLADEVFKKMER--IEEIVQPLAAA-GRFEPLINRLCQG-SDNVQIEMAFLVGKLTLTN-SC 357 (859)
Q Consensus 283 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~--~~~~~~~i~~~-G~i~~Lv~lL~~~-~~~~~~~aa~~L~~la~~~-~~ 357 (859)
.++.|++.|+ ++++.++..|+.+|+++.. .+.....+++. |++|.|+++|.++ ++.++..++++|.+++..+ ++
T Consensus 21 ~l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 21 ITSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp -CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4889999998 8899999999999999853 34445667777 9999999999988 8999999999999999854 44
Q ss_pred HHHHH-HhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002999 358 KEHIA-RQCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANV 433 (859)
Q Consensus 358 ~~~i~-~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL 433 (859)
...+. .++++.|+++|+ ++.+++.|+++|.+|+... +.+..+++.|+++.|+.+|.+ +.+..++..|+++|.|+
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Confidence 44444 456799999999 8899999999999999987 678889999999999999963 35689999999999999
Q ss_pred hcCC-CcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcC
Q 002999 434 VSNP-GCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEH 512 (859)
Q Consensus 434 ~~~~-~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 512 (859)
+.+. +.... .+. .++++.|+.++.++++.++..++|+|.+++.+... ....+.+.|+++.|+.++.+
T Consensus 178 ~~~~~~~~~~--------~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~ 245 (450)
T 2jdq_A 178 CRGKSPPPEF--------AKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND---KIQAVIDAGVCRRLVELLMH 245 (450)
T ss_dssp HCCSSSCCCG--------GGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH---HHHHHHHTTTHHHHHHHTTC
T ss_pred hCCCCCCCCH--------HHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH---HHHHHHHcCcHHHHHHHHCC
Confidence 9875 32221 122 78999999999999999999999999999987532 24567788999999999999
Q ss_pred CChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHH
Q 002999 513 PEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWI 592 (859)
Q Consensus 513 ~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L 592 (859)
++++++..|+++|.+++. .++...+.+.+.|+++.|+.+|.+++. .++..|+++|++++.++..
T Consensus 246 ~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~--~vr~~a~~~L~~l~~~~~~------------- 309 (450)
T 2jdq_A 246 NDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKE--SIKKEACWTISNITAGNRA------------- 309 (450)
T ss_dssp SCHHHHHHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHTTCSSH--HHHHHHHHHHHHHTTSCHH-------------
T ss_pred CchhHHHHHHHHHHHHhh-CChHHHHHHHHCccHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHH-------------
Confidence 999999999999999983 444555566677999999999998765 8999999999998863322
Q ss_pred HHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 593 VITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 593 ~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
....+.+.|++|.|+++|.++ ++.+|..|+++|++++..
T Consensus 310 ----------------------------------------~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 310 ----------------------------------------QIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSG 348 (450)
T ss_dssp ----------------------------------------HHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 222344568899999999985 999999999999999875
Q ss_pred cccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHh
Q 002999 673 GRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALST 752 (859)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 752 (859)
... .....+++.|++++|+++|++++++++..|+.+|.+
T Consensus 349 ~~~-----------------------------------------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 387 (450)
T 2jdq_A 349 GSA-----------------------------------------EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387 (450)
T ss_dssp CCH-----------------------------------------HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred CCH-----------------------------------------HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 210 111235578999999999999999999999999999
Q ss_pred hhhccCcc--------hhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccc
Q 002999 753 LIIDTSKN--------FKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEG 805 (859)
Q Consensus 753 L~~d~~~~--------~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~ 805 (859)
|+.. ... .+.....+.+.||++.|..++. +++..++++|..+|+++|..++
T Consensus 388 l~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 388 ILRL-GEQEAKRNGTGINPYCALIEEAYGLDKIEFLQS-HENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHH-HHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHC-HHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHh-chhhhhccccchhHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHCCccc
Confidence 9975 221 1234578999999999999887 6899999999999999997554
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=8.6e-32 Score=313.55 Aligned_cols=405 Identities=17% Similarity=0.151 Sum_probs=342.1
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCC-cchhHHHhcCcHHHHHHHHhcCC-CCcchHHHHHHHHHHHhcccC
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHP-SNRYRVRNAGVVLLIVKLLKSSS-KSVGTILRSKALMALLSMAKD 229 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~-~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~~~~~al~~L~~L~~~ 229 (859)
.++.+++.|.++++ +....|++.|.++..... ..+..+.+.|++|.|+++|++++ . .++..|+++|.+++.+
T Consensus 75 ~l~~lv~~L~s~~~--~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~----~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 75 SLPAMIGGVYSDDN--NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFP----QLQFEAAWALTNIASG 148 (528)
T ss_dssp CHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCH----HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCH----HHHHHHHHHHHHHhCC
Confidence 47888888876533 344469999999977554 67788999999999999999876 6 9999999999999997
Q ss_pred -cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccCh-hhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHH
Q 002999 230 -EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE-AYCKSVASEKGALVLLSSMTGNLELPALSNLADEVF 307 (859)
Q Consensus 230 -~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 307 (859)
++++..+++.|+++.|+.+|.+++..+++.|+++|.+|+.+. ..+..+. ..|+++.|+.+|..+.++.++..++++|
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~-~~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVL-ANGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHH-HTTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHH-HCCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999874 4566665 5899999999995478899999999999
Q ss_pred HHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccH-HHHH-HhhHHHHHHHhC--ChhHHHHHH
Q 002999 308 KKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCK-EHIA-RQCAKVLVELLS--KPAGRAASL 383 (859)
Q Consensus 308 ~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~-~~i~-~~gi~~Lv~lL~--~~~~~~~a~ 383 (859)
.+|+....+.......|+++.|+.+|.+++++++..++++|++++...+.+ ..+. .++++.|+.+|. ++.++..|+
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 999987665566667899999999999999999999999999999877664 3444 456899999999 888999999
Q ss_pred HHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHH
Q 002999 384 KALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLL 462 (859)
Q Consensus 384 ~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll 462 (859)
++|.||+... .....+++.|+++.|+.+|.+ ..+..++..|+++|.||+.+...... .+...++++.|+
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~v~~~A~~~L~nl~~~~~~~~~--------~~~~~~~i~~L~ 377 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ--NLKKSIKKEACWTISNITAGNKDQIQ--------AVINAGIIGPLV 377 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTSCHHHHH--------HHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC--CCcHHHHHHHHHHHHHHHCCCHHHHH--------HHHHCCCHHHHH
Confidence 9999999976 567788899999999999975 22689999999999999986543322 466779999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccH--------
Q 002999 463 GLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQ-------- 534 (859)
Q Consensus 463 ~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~-------- 534 (859)
.+|.+++++++..++++|.+++.... ......+.+.|+++.|+.+|.+++++++..++++|.+|......
T Consensus 378 ~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~ 455 (528)
T 4b8j_A 378 NLLQTAEFDIKKEAAWAISNATSGGS--HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD 455 (528)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999998632 13356677899999999999999999999999999999843322
Q ss_pred --HHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCc
Q 002999 535 --DLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSE 577 (859)
Q Consensus 535 --~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~ 577 (859)
.....+.+.|+++.|..+..+.+. +++..|..+|.++...+
T Consensus 456 ~~~~~~~i~~~~~~~~l~~L~~~~~~--~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 456 VNVFSQMIDEAEGLEKIENLQSHDNN--EIYEKAVKILEAYWMDE 498 (528)
T ss_dssp CCHHHHHHHHTTHHHHHHHGGGCSSH--HHHHHHHHHHHHHCC--
T ss_pred ccHHHHHHHHCCcHHHHHHHHcCCCH--HHHHHHHHHHHHHCCCc
Confidence 245667778999999999888776 88999999999887643
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5.9e-31 Score=306.52 Aligned_cols=414 Identities=13% Similarity=0.068 Sum_probs=345.3
Q ss_pred cCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhcCC-CHHHHHHHHHHHHHhccC
Q 002999 194 AGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLIGN-SEKEKEYAVKLLLEFCID 270 (859)
Q Consensus 194 ~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~ 270 (859)
.+.++.|+..|++++. .+|..|+.+|+++... ..++..+.+.|++|.|+.+|.++ ++.++..|+++|.+++..
T Consensus 86 ~~~i~~lv~~L~s~~~----~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~ 161 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDM----QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 161 (530)
T ss_dssp -CCHHHHHHHHSCSSH----HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 4679999999999887 9999999999999664 45677888999999999999997 899999999999999986
Q ss_pred h-hhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHH
Q 002999 271 E-AYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLV 348 (859)
Q Consensus 271 ~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L 348 (859)
. +.+..+. ..|+++.|+.+|. ++++.++..|+++|.+|+.. +.++..+.+.|++++|+.+|.+.+..++..++++|
T Consensus 162 ~~~~~~~~~-~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 239 (530)
T 1wa5_B 162 TSAQTKVVV-DADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL 239 (530)
T ss_dssp CHHHHHHHH-HTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHH
T ss_pred CHHHHHHHH-HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHH
Confidence 4 5565555 5899999999999 78999999999999999976 56788889999999999999999999999999999
Q ss_pred HHhcCCC-cc-HHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHH
Q 002999 349 GKLTLTN-SC-KEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELK 423 (859)
Q Consensus 349 ~~la~~~-~~-~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~ 423 (859)
++|+.+. .. ...+..++++.|+.+|. ++.++..|+++|.+|+... +....+++.|+++.|+.+|.+ .+..++
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~---~~~~v~ 316 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH---ESTLVQ 316 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC---CChhhH
Confidence 9999865 33 44445667899999999 8899999999999999876 567788899999999999964 567999
Q ss_pred HHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCH
Q 002999 424 ELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGI 503 (859)
Q Consensus 424 ~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i 503 (859)
..|+++|.|++.+.+.... .+...++++.|+.+|.++++.++..++|+|.+++.... ...+.+.+.|++
T Consensus 317 ~~a~~~L~~l~~~~~~~~~--------~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~---~~~~~~~~~~~l 385 (530)
T 1wa5_B 317 TPALRAVGNIVTGNDLQTQ--------VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT---EQIQAVIDANLI 385 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHH--------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHH--------HHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCH
Confidence 9999999999987654332 35667999999999999999999999999999998643 234556789999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhccH--HHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHH
Q 002999 504 KYIIQFLEHPEVEHRTYAFRLTRILSERIGQ--DLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVK 581 (859)
Q Consensus 504 ~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~ 581 (859)
+.|+.+|.+++++++..|+++|.+++...+. +....+.+.|+++.|+.++.+.+. +++..|+++|.++........
T Consensus 386 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~al~aL~~l~~~~~~~~ 463 (530)
T 1wa5_B 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN--RIIEVTLDALENILKMGEADK 463 (530)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999854333 455666677999999999998875 899999999999876322210
Q ss_pred HHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 002999 582 TLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQL 661 (859)
Q Consensus 582 ~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~ 661 (859)
.. .. . ........+.+.|+++.|..++.++ ++.++..
T Consensus 464 ~~-------------~~---~--------------------------~~~~~~~~l~~~g~~~~L~~L~~~~-~~~v~~~ 500 (530)
T 1wa5_B 464 EA-------------RG---L--------------------------NINENADFIEKAGGMEKIFNCQQNE-NDKIYEK 500 (530)
T ss_dssp HH-------------HT---C--------------------------SSCHHHHHHHHTTHHHHHHGGGGCS-CHHHHHH
T ss_pred hc-------------cc---c--------------------------cccHHHHHHHHcCcHHHHHHHHcCC-CHHHHHH
Confidence 00 00 0 0112334577889999999999986 9999999
Q ss_pred HHHHhhhhhhh
Q 002999 662 AAHGLKNLSEA 672 (859)
Q Consensus 662 Aa~aL~~ls~~ 672 (859)
|..+|.++...
T Consensus 501 a~~il~~~~~~ 511 (530)
T 1wa5_B 501 AYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHCCc
Confidence 99999988754
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.98 E-value=3.6e-30 Score=293.30 Aligned_cols=411 Identities=14% Similarity=0.077 Sum_probs=337.1
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhccc---CcchHHHHHhh-CchHHHHHHhcCC-CHHHHHHHHHHHHHhccC
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAK---DEESKKIMLEE-GVTKSVIHSLIGN-SEKEKEYAVKLLLEFCID 270 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~---~~~~r~~i~~~-g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~ 270 (859)
.++.|++.|++++. .+|..|+..|+.+.. ++.. ..+.+. |+++.|+.+|+++ ++.++..|+++|.+++..
T Consensus 21 ~l~~l~~~l~s~~~----~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 95 (450)
T 2jdq_A 21 ITSDMIEMIFSKSP----EQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG 95 (450)
T ss_dssp -CHHHHHHHHSSCH----HHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHhcCCCH----HHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 47899999998887 999999999999754 2334 445555 9999999999998 899999999999999985
Q ss_pred -hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC-cChHHHHhcCChHHHHHHhcc-CChHHHHHHHHH
Q 002999 271 -EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIE-EIVQPLAAAGRFEPLINRLCQ-GSDNVQIEMAFL 347 (859)
Q Consensus 271 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~-~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~ 347 (859)
++....+. ..|+++.|+.+|+ ++++.++..|+.+|.+++... .++..+++.|++++|+.+|.+ .+..++..++++
T Consensus 96 ~~~~~~~~~-~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~ 173 (450)
T 2jdq_A 96 NSLQTRIVI-QAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173 (450)
T ss_dssp CHHHHHHHH-HTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CHHHHHHHH-hCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45555554 5899999999999 789999999999999999764 577889999999999999985 689999999999
Q ss_pred HHHhcCCC--ccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHH
Q 002999 348 VGKLTLTN--SCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPEL 422 (859)
Q Consensus 348 L~~la~~~--~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 422 (859)
|++++.+. ..+..+..++++.|+.+|+ ++.++..++++|.+|+... +....+.+.|+++.|+.+|.+ .+..+
T Consensus 174 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v 250 (450)
T 2jdq_A 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH---NDYKV 250 (450)
T ss_dssp HHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC---SCHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC---CchhH
Confidence 99999764 3333334677899999998 8899999999999999876 567788899999999999964 56799
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCC
Q 002999 423 KELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDG 502 (859)
Q Consensus 423 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~ 502 (859)
+..|+++|.+++.+.+.... .+...|+++.|+.+|.++++.++..++++|.+++.+.. ...+.+.+.|+
T Consensus 251 ~~~a~~~L~~l~~~~~~~~~--------~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~---~~~~~~~~~~~ 319 (450)
T 2jdq_A 251 VSPALRAVGNIVTGDDIQTQ--------VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR---AQIQTVIDANI 319 (450)
T ss_dssp HHHHHHHHHHHTTSCHHHHH--------HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTH
T ss_pred HHHHHHHHHHHhhCChHHHH--------HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCC
Confidence 99999999999987654332 35667999999999999999999999999999997643 23455777899
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHH
Q 002999 503 IKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKT 582 (859)
Q Consensus 503 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~ 582 (859)
++.|+.++.++++++|..|+++|.+++...+.+....+.+.|+++.|+.++.+++. +++..|+++|.++.........
T Consensus 320 l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--~v~~~a~~aL~~l~~~~~~~~~ 397 (450)
T 2jdq_A 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDS--KIVQVALNGLENILRLGEQEAK 397 (450)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhchhhhh
Confidence 99999999999999999999999999854355555666667999999999998875 8999999999998863222100
Q ss_pred HHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHH
Q 002999 583 LLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLA 662 (859)
Q Consensus 583 l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~A 662 (859)
. .. . ........+.+.|+++.|..++.++ ++.++..|
T Consensus 398 ~-------------~~---~--------------------------~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a 434 (450)
T 2jdq_A 398 R-------------NG---T--------------------------GINPYCALIEEAYGLDKIEFLQSHE-NQEIYQKA 434 (450)
T ss_dssp H-------------SC---S--------------------------CCCHHHHHHHHHHCHHHHHHHHCHH-HHHHHHHH
T ss_pred c-------------cc---c--------------------------chhHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHH
Confidence 0 00 0 0112344567788999999999885 99999999
Q ss_pred HHHhhhhhhh
Q 002999 663 AHGLKNLSEA 672 (859)
Q Consensus 663 a~aL~~ls~~ 672 (859)
..+|.++...
T Consensus 435 ~~~l~~~~~~ 444 (450)
T 2jdq_A 435 FDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHCCc
Confidence 9999988743
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=4.1e-29 Score=271.71 Aligned_cols=263 Identities=18% Similarity=0.143 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcC-----------CCHHHHHHHHHHHHHhccChh-hhhHhhhhh
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIG-----------NSEKEKEYAVKLLLEFCIDEA-YCKSVASEK 281 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~ 281 (859)
..+..|+++|.+++.++++|..|++.|+++.|+.+|.+ .+++++..|+++|.+|+.+++ ++..+....
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 56678999999999999999999999999999999953 236789999999999998765 777775556
Q ss_pred ChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC--CcChHHHHhcCChHHHHHHh-ccCChHHHHHHHHHHHHhcC-CCcc
Q 002999 282 GALVLLSSMTGNLELPALSNLADEVFKKMERI--EEIVQPLAAAGRFEPLINRL-CQGSDNVQIEMAFLVGKLTL-TNSC 357 (859)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~~~~~~i~~~G~i~~Lv~lL-~~~~~~~~~~aa~~L~~la~-~~~~ 357 (859)
|+||.||++|+ ++++++++.|+++|+||+.. ++++..+++.|+||+|+++| .+++++++..++.+|+||+. ++++
T Consensus 127 GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 127 GCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 78999999999 89999999999999999974 56889999999999999975 66789999999999999998 6678
Q ss_pred HHHHH--HhhHHHHHHHhC--Ch----hHHHHHHHHHHHhhC----CCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHH
Q 002999 358 KEHIA--RQCAKVLVELLS--KP----AGRAASLKALYNLSG----LDDNATILVDSALLPALTDILFKSHDASPELKEL 425 (859)
Q Consensus 358 ~~~i~--~~gi~~Lv~lL~--~~----~~~~~a~~aL~~Ls~----~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~ 425 (859)
|..+. .+++++|+++|+ ++ .+++.|+++|+||+. .++++..+.++|++|+|+.+|.+ .+..+++.
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~ 282 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSN 282 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC---SCHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC---CChHHHHH
Confidence 87775 355799999998 33 489999999999996 55889999999999999999975 56789999
Q ss_pred HHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 002999 426 AAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQ 488 (859)
Q Consensus 426 a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~ 488 (859)
|+++|+||+..++.... .+.+.|+|++|+.+|.++++.+++.++++|.+|+.+..
T Consensus 283 A~~aL~nLa~~~~~~~~--------~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQE--------ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTSSCHHHHH--------HHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHH--------HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999965443332 57889999999999999999999999999999998754
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.5e-28 Score=267.21 Aligned_cols=269 Identities=16% Similarity=0.189 Sum_probs=230.9
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcC-------CCCcchHHHHHHHHHHHhcccC-cchHHHHHh-
Q 002999 168 DGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSS-------SKSVGTILRSKALMALLSMAKD-EESKKIMLE- 238 (859)
Q Consensus 168 ~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~- 238 (859)
..+.+|++.|.+++.+ +++|..+.+.|+++.|+.+|.+. ....+..+|..|+++|.+|+.+ +++|..+..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4455799999999985 78999999999999999999632 1111227899999999999987 558888864
Q ss_pred hCchHHHHHHhcCCCHHHHHHHHHHHHHhccC--hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCc
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID--EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER-IEE 315 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~ 315 (859)
.|+||.|+.+|++++.++++.|+++|++|+.. ++++..|. +.|+||.|+++|..+.++.+++.|+.+|+||+. +++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~-~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR-EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH-HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH-HCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 66799999999999999999999999999984 56788887 589999999986436788999999999999998 668
Q ss_pred ChHHHH-hcCChHHHHHHhccCCh----HHHHHHHHHHHHhcC----CCccHHHHHHh-hHHHHHHHhC--ChhHHHHHH
Q 002999 316 IVQPLA-AAGRFEPLINRLCQGSD----NVQIEMAFLVGKLTL----TNSCKEHIARQ-CAKVLVELLS--KPAGRAASL 383 (859)
Q Consensus 316 ~~~~i~-~~G~i~~Lv~lL~~~~~----~~~~~aa~~L~~la~----~~~~~~~i~~~-gi~~Lv~lL~--~~~~~~~a~ 383 (859)
++..++ ..|+||+|+.+|.++++ +++..++++|.||+. +++++..+.+. ++++|+++|+ +..+++.|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 888888 78999999999987654 589999999999995 77778887765 5799999999 888999999
Q ss_pred HHHHHhhCC-CcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCccc
Q 002999 384 KALYNLSGL-DDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWE 441 (859)
Q Consensus 384 ~aL~~Ls~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 441 (859)
++|+||+.. ++++..++++|++|+|+.+|.+ .+..+++.|+++|.||+.+.+...
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s---~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHS---KHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC---SSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999965 4788999999999999999965 567899999999999999876544
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.3e-26 Score=260.27 Aligned_cols=451 Identities=13% Similarity=0.088 Sum_probs=311.1
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcch-HHHHHhhCchHHHHHHhcC
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEES-KKIMLEEGVTKSVIHSLIG 251 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~-r~~i~~~g~i~~Lv~lL~~ 251 (859)
.|+.|...| .++..|.++. .+.++.|..++++ . .++..|+.+|+.|...... ...+. ...+.+++.|.+
T Consensus 276 ~L~lLsaAC-i~~~cR~~I~-~~~~~~L~~~l~~--~----~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~ 345 (778)
T 3opb_A 276 LLRLLSSAC-IDETMRTYIT-ENYLQLLERSLNV--E----DVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISR 345 (778)
T ss_dssp HHHHHHHHC-CSHHHHHHHH-HHHHHHHHHHTTS--G----GGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTT
T ss_pred HHHHHHHHh-CCcHHHHHHH-HhHHHHHHHHhcc--H----HHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhc
Confidence 344454444 4566688885 5788999999975 3 7899999999998876321 11221 256778888888
Q ss_pred CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHH
Q 002999 252 NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLIN 331 (859)
Q Consensus 252 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~ 331 (859)
++.+.+..|+..|..++.+++.++.+..+.|++..|+.+++..++..+...++.+|.||+...++.... ...+..|-.
T Consensus 346 ~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e--~~~l~~Lk~ 423 (778)
T 3opb_A 346 RIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX--XXXXXXXXX 423 (778)
T ss_dssp CCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC--CC-------
T ss_pred CCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh--hhhhhhhhh
Confidence 777779999999999999999999999999999999999994477889999999999999865542110 112223333
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCccHHHHHHhh-HHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHH
Q 002999 332 RLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQC-AKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPAL 408 (859)
Q Consensus 332 lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~g-i~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~L 408 (859)
+.....++...........-...+.++..+.+.| +++|+.+++ ++.+++.|+++|.|||...++|..+++.|++++|
T Consensus 424 ~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~L 503 (778)
T 3opb_A 424 XXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKII 503 (778)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHH
T ss_pred hccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 3322111111100000000000111445555555 699999998 8999999999999999998999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcC--CC-----------h-HHHH
Q 002999 409 TDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSG--VS-----------P-QCQV 474 (859)
Q Consensus 409 v~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~--~~-----------~-~~~~ 474 (859)
+.+|.+.+......++.|+.+|++|.........+. +... .++|++|+.||.. .. + -.+.
T Consensus 504 L~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~----~~~~--~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~f 577 (778)
T 3opb_A 504 LEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFK----KYSA--LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY 577 (778)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSS----SSCS--TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHH
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcC----CCcc--ccchHHHHHHcCCCCCcccccccccccccHHHHH
Confidence 999976322212489999999999986554322110 1111 3899999999983 21 1 1266
Q ss_pred HHHHHHHHhccCChh-HHHHHHHHhhC-CCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCC------ch
Q 002999 475 STLRILCGIASSPQA-AESVATHIKSG-DGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFD------KL 546 (859)
Q Consensus 475 ~a~~aL~~La~~~~~-~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g------~i 546 (859)
.|+.+|.|||..+.+ .++++..|.+. |+++.|..+|.+++..+|+.|+++++||+. .+......+...+ .+
T Consensus 578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL 656 (778)
T 3opb_A 578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNF 656 (778)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHH
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccH
Confidence 899999999998743 23456667775 999999999999999999999999999983 2222212333222 38
Q ss_pred HHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHH-HHHHHh-ccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhh
Q 002999 547 VLFKDKILDNQSANCERSDAACILANIQLSEEEV-KTLLEA-TFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLH 624 (859)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~l~~~-g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~ 624 (859)
+.||.++.+++. +++.+|+|+|++++..++.+ +.+++. ++++.++.++++.. ....++..++.++.+
T Consensus 657 ~lLV~Ll~s~D~--~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~---------~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 657 NILVKLLQLSDV--ESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQI---------DDIELRQRLLMLFFG 725 (778)
T ss_dssp HHHHHGGGCSCH--HHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccC---------CCHHHHHHHHHHHHH
Confidence 899999988776 99999999999997656554 888886 89999999998831 123456777777777
Q ss_pred cccC----CC-hhhHHHHHhcCchHHHHHhhcCC
Q 002999 625 FTRS----VN-PQTLGMVREQRLMTIFRDQLSFP 653 (859)
Q Consensus 625 ~~~~----~~-~~~~~~i~~~~~i~~Lv~lL~~~ 653 (859)
++.. .+ ............+..|.++|+++
T Consensus 726 L~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 726 LFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 7741 11 23333333555566666666664
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-25 Score=257.86 Aligned_cols=377 Identities=14% Similarity=0.096 Sum_probs=291.3
Q ss_pred HHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHh-hCchHHHHHHhc
Q 002999 172 KALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLE-EGVTKSVIHSLI 250 (859)
Q Consensus 172 ~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~-~g~i~~Lv~lL~ 250 (859)
.|+-.|..++..+......+.+ ..+.++++|.+++. +.+..|++.|..|+.+++.|+.+++ .|+++.|+.+++
T Consensus 313 lAavvL~KL~~~~~~~~~si~~--La~~~~~~L~~~~~----~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk 386 (778)
T 3opb_A 313 YSALVLVKTWSFTKLTCINLKQ--LSEIFINAISRRIV----PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIK 386 (778)
T ss_dssp HHHHHHHHHTGGGTCTTCCHHH--HHHHHHHHTTTCCH----HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCcCcHHH--HHHHHHHHHhcCCc----cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHh
Confidence 4788888877654433323322 55677777777655 6699999999999999999999987 566999999999
Q ss_pred C-CCHHHHHHHHHHHHHhccChh---------------------------------------hhhHhhhhhChHHHHHHh
Q 002999 251 G-NSEKEKEYAVKLLLEFCIDEA---------------------------------------YCKSVASEKGALVLLSSM 290 (859)
Q Consensus 251 ~-~~~~~~~~A~~~L~~Ls~~~~---------------------------------------~~~~i~~~~g~i~~Lv~l 290 (859)
. ++......++.+|.|++.+.+ ++..+ .+.|++|.|+.+
T Consensus 387 ~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l-~eaGvIp~Lv~L 465 (778)
T 3opb_A 387 SQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI-LRTELISFLKRE 465 (778)
T ss_dssp TTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT-TTTTHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH-HHCcCHHHHHHH
Confidence 5 677888999999999987421 23344 468999999999
Q ss_pred hcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChH---HHHHHHHHHHHhcCCCccHHHHH----H
Q 002999 291 TGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDN---VQIEMAFLVGKLTLTNSCKEHIA----R 363 (859)
Q Consensus 291 L~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~---~~~~aa~~L~~la~~~~~~~~i~----~ 363 (859)
+. ++++.+++.|+++|.||+.++++|..+++.|++++|+.+|.+++.. .+..|+.+|+++..+.+....+. .
T Consensus 466 l~-S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~ 544 (778)
T 3opb_A 466 MH-NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL 544 (778)
T ss_dssp GG-GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST
T ss_pred Hc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc
Confidence 99 8899999999999999999999999999999999999999888655 89999999999997766555442 2
Q ss_pred hhHHHHHHHhC-Chh---------------HHHHHHHHHHHhhCCCc-----chHHHHHc-CcHHHHHHHHhccCCCCHH
Q 002999 364 QCAKVLVELLS-KPA---------------GRAASLKALYNLSGLDD-----NATILVDS-ALLPALTDILFKSHDASPE 421 (859)
Q Consensus 364 ~gi~~Lv~lL~-~~~---------------~~~~a~~aL~~Ls~~~~-----~~~~i~~~-G~i~~Lv~lL~~~~~~~~~ 421 (859)
+++++|+.+|. ++. .+..|+.||.||+..+. .+..|+.. |+++.|..+|.+ .+..
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s---~n~~ 621 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD---ENVP 621 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC---SSHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC---CCHH
Confidence 56899999998 332 26789999999999874 37778885 999999999975 4578
Q ss_pred HHHHHHHHHHHhhcCCCcc-cccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhC
Q 002999 422 LKELAAATIANVVSNPGCW-ELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSG 500 (859)
Q Consensus 422 ~~~~a~~~L~nL~~~~~~~-~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~ 500 (859)
+++.|+++++||+.++... ..+.... .-...+.++.|+.|++.++.++|..|+|+|++++.... .+.+.+.+.
T Consensus 622 VrrAA~elI~NL~~~~e~i~~k~~~~~---~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~---~ia~~ll~~ 695 (778)
T 3opb_A 622 LQRSTLELISNMMSHPLTIAAKFFNLE---NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP---LIAKELLTK 695 (778)
T ss_dssp HHHHHHHHHHHHHTSGGGTGGGTSCCS---SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH---HHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHhhc---CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHc
Confidence 9999999999999977654 2221000 00011248899999999999999999999999975322 234555665
Q ss_pred -CCHHHHHHhhcC--CChhHHHHHHHHHHHHhhh----cc-HHHHHhcCCCCchHHHHHhhccCCCchhHHHHH
Q 002999 501 -DGIKYIIQFLEH--PEVEHRTYAFRLTRILSER----IG-QDLAYALKPFDKLVLFKDKILDNQSANCERSDA 566 (859)
Q Consensus 501 -g~i~~Lv~lL~~--~~~~v~~~A~~~L~~Ls~~----~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A 566 (859)
+|++.++.+++. ++++++..++.++.||+.. .+ +............+.|.+++++++. .++...|
T Consensus 696 ~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~-~~e~~~~ 768 (778)
T 3opb_A 696 KELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDS-GPEFSAA 768 (778)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSS-CSSTTSH
T ss_pred cccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCc-hHHHHHH
Confidence 899999999999 8899999999999999842 22 2222333344678889999998876 3443333
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=5.8e-23 Score=214.11 Aligned_cols=238 Identities=19% Similarity=0.233 Sum_probs=214.2
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC-hh
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID-EA 272 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~ 272 (859)
|.+|.|+++|++++. +++..|+++|.+++.+ ++++..+.+.|+++.|+.+|++++.+++..|+.+|.+++.+ ++
T Consensus 2 ~~i~~L~~~L~~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS----ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp CHHHHHHHHTTCSCH----HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHcCCCH----HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 679999999999887 9999999999999987 56999999999999999999999999999999999999998 67
Q ss_pred hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhc-CCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 002999 273 YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKME-RIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKL 351 (859)
Q Consensus 273 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~-~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~l 351 (859)
.+..+. ..|+++.|+.+|+ ++++.++..|+.+|.+|+ ..++++..+.+.|+++.|+.+|.++++.++..++++|+++
T Consensus 78 ~~~~~~-~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 78 AIKAIV-DAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HHHHHH-HTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 777776 5899999999999 889999999999999999 5678888999999999999999999999999999999999
Q ss_pred cCCCcc-HHHHHH-hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHH
Q 002999 352 TLTNSC-KEHIAR-QCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELA 426 (859)
Q Consensus 352 a~~~~~-~~~i~~-~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a 426 (859)
+..++. +..+.+ ++++.|+.+|. ++.++..|+++|.+|+... +.+..+.+.|+++.|+.++.+ .+..+++.|
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a 232 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEA 232 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHH
Confidence 986654 455544 55799999999 8899999999999999865 567889999999999999965 567999999
Q ss_pred HHHHHHhhcCCCccc
Q 002999 427 AATIANVVSNPGCWE 441 (859)
Q Consensus 427 ~~~L~nL~~~~~~~~ 441 (859)
+++|.||+.......
T Consensus 233 ~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 233 QRALENIKSGGWLEH 247 (252)
T ss_dssp HHHHHHHHHTCBCCC
T ss_pred HHHHHHHHcCCCccc
Confidence 999999998876543
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.90 E-value=2.1e-22 Score=209.84 Aligned_cols=234 Identities=21% Similarity=0.250 Sum_probs=208.7
Q ss_pred ChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC-cChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC-CccHH
Q 002999 282 GALVLLSSMTGNLELPALSNLADEVFKKMERIE-EIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT-NSCKE 359 (859)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~-~~~~~ 359 (859)
|.|+.|+.+|. +++++++..|+.+|.+++..+ +++..+++.|++++|+.+|.+++++++..++++|++++.+ ++++.
T Consensus 2 ~~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57999999999 778999999999999999765 4888999999999999999999999999999999999997 56677
Q ss_pred HHHH-hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 360 HIAR-QCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 360 ~i~~-~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
.+.+ ++++.|+.+|+ ++.++..|+++|.+|+... +++..+.+.|+++.|+.+|.+ .+..++..|+++|.||+.
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHc
Confidence 7765 45799999999 8899999999999999654 788999999999999999965 558999999999999998
Q ss_pred CCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCCh
Q 002999 436 NPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEV 515 (859)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 515 (859)
+.+.... .+.+.|+++.|+.++.++++.++..++++|.+++.... ..++.+.+.|+++.|+.+++++++
T Consensus 158 ~~~~~~~--------~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 158 GPDEAIK--------AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT---SAIKAIVDAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp SCHHHHH--------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH---HHHHHHHHTTHHHHHHHGGGCSCH
T ss_pred CCHHHHH--------HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHCCCcH
Confidence 7655432 46778999999999999999999999999999998643 345678899999999999999999
Q ss_pred hHHHHHHHHHHHHhh
Q 002999 516 EHRTYAFRLTRILSE 530 (859)
Q Consensus 516 ~v~~~A~~~L~~Ls~ 530 (859)
+++..|+++|.+|+.
T Consensus 227 ~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 227 EVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999984
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=1.5e-22 Score=211.35 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=207.0
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhccc-CcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhcc-Chh
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAK-DEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCI-DEA 272 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~ 272 (859)
...+.++++|++++. ++|..|+++|+++.. +++++..+.+.|+++.|+.+|++++++++..|+.+|.+++. +++
T Consensus 12 ~~~~~~~~~L~s~~~----~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 12 SELPQMTQQLNSDDM----QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CSHHHHHHHHHSSCS----SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred chHHHHHHHHcCCCH----HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 347899999999998 999999999977655 47788999999999999999999999999999999999998 567
Q ss_pred hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh-HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 002999 273 YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV-QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKL 351 (859)
Q Consensus 273 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~l 351 (859)
.+..+. ..|+++.|+.+|+ ++++.++..|+.+|.||+..++++ ..+.+.|+++.|+.+|.++++.++..++++|+++
T Consensus 88 ~~~~i~-~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 88 QIQAVI-DAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHH-HTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 777776 5899999999999 789999999999999999998888 8899999999999999999999999999999999
Q ss_pred cCCC-ccHHHHH-HhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHH
Q 002999 352 TLTN-SCKEHIA-RQCAKVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELA 426 (859)
Q Consensus 352 a~~~-~~~~~i~-~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a 426 (859)
+..+ +++..+. .++++.|+++|+ ++.++..|+++|.+|+... +.+..+.+.|+++.|+.++.+ .+..+++.|
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~A 242 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH---ENEKIQKEA 242 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC---SSSHHHHTH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC---CCHHHHHHH
Confidence 9865 4455555 456899999999 8899999999999999766 667889999999999999965 456999999
Q ss_pred HHHHHHhhcC
Q 002999 427 AATIANVVSN 436 (859)
Q Consensus 427 ~~~L~nL~~~ 436 (859)
+++|.||+.+
T Consensus 243 ~~~L~~l~~~ 252 (252)
T 4db8_A 243 QEALEKLQSH 252 (252)
T ss_dssp HHHHHTTC--
T ss_pred HHHHHHHhcC
Confidence 9999999753
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.89 E-value=3.1e-22 Score=208.90 Aligned_cols=234 Identities=17% Similarity=0.187 Sum_probs=205.8
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHH-hccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcCh
Q 002999 240 GVTKSVIHSLIGNSEKEKEYAVKLLLE-FCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER-IEEIV 317 (859)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~A~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~~ 317 (859)
...+.+++.|.+++++++..|+..|.+ ++.+++.+..+. ..|+++.|+.+|+ ++++.++..|+.+|.+|+. +++++
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~-~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHH-HcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 468999999999999999999999976 445566677776 5899999999999 7789999999999999997 67888
Q ss_pred HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccH-HHHHH-hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC
Q 002999 318 QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCK-EHIAR-QCAKVLVELLS--KPAGRAASLKALYNLSGLD 393 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~-~~i~~-~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~ 393 (859)
..+++.|++++|+.+|.++++.++..++++|++++.+++++ ..+.+ ++++.|+++|+ ++.++..|+++|.+|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998887 66655 55799999999 8899999999999999876
Q ss_pred -cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHH
Q 002999 394 -DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQC 472 (859)
Q Consensus 394 -~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~ 472 (859)
+++..+.+.|+++.|+.+|.+ ++..+++.|+++|.||+..++.... .+.+.|+++.|+.++.++++++
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~--------~~~~~g~i~~L~~ll~~~~~~v 238 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQ--------AVKEAGALEKLEQLQSHENEKI 238 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGC---SSHHHHHHHHHHHHHHTTSCHHHHH--------HHHHTTHHHHHHTTTTCSSSHH
T ss_pred hHHHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHHHHhcCCHHHHH--------HHHHCCcHHHHHHHhCCCCHHH
Confidence 667888999999999999975 4689999999999999976554332 4678899999999999999999
Q ss_pred HHHHHHHHHHhccC
Q 002999 473 QVSTLRILCGIASS 486 (859)
Q Consensus 473 ~~~a~~aL~~La~~ 486 (859)
++.|+++|.+|+.+
T Consensus 239 ~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 239 QKEAQEALEKLQSH 252 (252)
T ss_dssp HHTHHHHHHTTC--
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999853
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=4.3e-22 Score=201.38 Aligned_cols=194 Identities=11% Similarity=0.083 Sum_probs=173.2
Q ss_pred chHHHHHHhcCCCH--HHHHHHHHHHHHhcc-ChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcC
Q 002999 241 VTKSVIHSLIGNSE--KEKEYAVKLLLEFCI-DEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER-IEEI 316 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~--~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~ 316 (859)
.+|.||.+|+++++ +++..|+..|.+|+. +++++..|. ..|+||.||++|+ ++++++++.|+++|.||+. +++|
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~-~~G~Ip~LV~lL~-s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVN-QLRGILKLLQLLK-VQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH-HTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHH-HcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHH
Confidence 58999999999987 888999999999996 567888887 4899999999999 8999999999999999997 5789
Q ss_pred hHHHHhcCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC------------------Chh
Q 002999 317 VQPLAAAGRFEPLINRLC-QGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS------------------KPA 377 (859)
Q Consensus 317 ~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~------------------~~~ 377 (859)
+..+++.|+||+|+++|. +++.+++.+++.+|+||+..+++|..|.++|+++|++++. ++.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999997 5789999999999999999999999998888999998663 347
Q ss_pred HHHHHHHHHHHhhCCC-cchHHHHHc-CcHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhcC
Q 002999 378 GRAASLKALYNLSGLD-DNATILVDS-ALLPALTDILFKS---HDASPELKELAAATIANVVSN 436 (859)
Q Consensus 378 ~~~~a~~aL~~Ls~~~-~~~~~i~~~-G~i~~Lv~lL~~~---~~~~~~~~~~a~~~L~nL~~~ 436 (859)
++++|+++|+|||..+ ++|+.|.+. |+|+.|+.+++.. ...+...+|+|..+|+||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999999976 889999986 6789999999872 344668999999999999864
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=8.5e-22 Score=199.22 Aligned_cols=197 Identities=14% Similarity=0.145 Sum_probs=167.3
Q ss_pred ccHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-
Q 002999 151 VQVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD- 229 (859)
Q Consensus 151 ~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~- 229 (859)
.+++.+++.|.+++++.+.+..|+..|++++..++.+|..+.+.|+||+|+++|++++. ++|+.|+++|++|+.+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~----~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE----DVQRAVCGALRNLVFED 83 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH----HHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH----HHHHHHHHHHHHHHhCC
Confidence 56899999999876543444468899999999999999999999999999999999887 9999999999999985
Q ss_pred cchHHHHHhhCchHHHHHHhc-CCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc---------------C
Q 002999 230 EESKKIMLEEGVTKSVIHSLI-GNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG---------------N 293 (859)
Q Consensus 230 ~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------------~ 293 (859)
++||..|+++|+||.|+++|+ +++.++++.|+.+|++|+..++++..|.. ++|+.|+.++. .
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccc
Confidence 899999999999999999998 57899999999999999999999999974 57999999763 0
Q ss_pred CCChHHHHHHHHHHHHhcCC-CcChHHHHhc-CChHHHHHHhccC------ChHHHHHHHHHHHHhcC
Q 002999 294 LELPALSNLADEVFKKMERI-EEIVQPLAAA-GRFEPLINRLCQG------SDNVQIEMAFLVGKLTL 353 (859)
Q Consensus 294 ~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~-G~i~~Lv~lL~~~------~~~~~~~aa~~L~~la~ 353 (859)
..+++++++|+.+|+||+.. +++|..|.+. |+|+.||.+++.+ +...+++++.+|+||+.
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 23679999999999999974 5899999986 6789999999652 34455555555555554
No 35
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.83 E-value=6.1e-18 Score=199.01 Aligned_cols=574 Identities=13% Similarity=0.098 Sum_probs=385.0
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE 231 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~ 231 (859)
.+..++..|.++++ ..+. .|++.|..++..-...+ . ....+|.|...+ +.+. ++|..++.+|..+...-.
T Consensus 11 ~i~~l~~~l~s~~~-~~R~-~A~~~l~~i~~~~~~~~--~-~~~l~~~L~~~~-d~~~----~vr~~~~~~L~~~~~~~~ 80 (588)
T 1b3u_A 11 PIAVLIDELRNEDV-QLRL-NSIKKLSTIALALGVER--T-RSELLPFLTDTI-YDED----EVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHHTTCSCH-HHHH-HHHHTHHHHHHHSCHHH--H-HHTHHHHHHHTC-CCCH----HHHHHHHHHHTTCSGGGT
T ss_pred cHHHHHHHhhcccH-HHHH-HHHHhHHHHHHHhCHHH--H-HHHHHHHHHHhc-CCcH----HHHHHHHHHHHHHHhccC
Confidence 36667777776443 2233 47777877664321111 1 113455555443 2333 899999999998875411
Q ss_pred hHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhc
Q 002999 232 SKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKME 311 (859)
Q Consensus 232 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~ 311 (859)
... .....++.|..++.+++..+|..|+.+|.+++...... .+ ..-.++.+..+.. +++...+..|+.++..+.
T Consensus 81 ~~~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~-~~--~~~l~~~l~~l~~-~~~~~~R~~a~~~l~~~~ 154 (588)
T 1b3u_A 81 GPE--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-DL--EAHFVPLVKRLAG-GDWFTSRTSACGLFSVCY 154 (588)
T ss_dssp SGG--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-HH--HHTHHHHHHHHHT-CSSHHHHHHHGGGHHHHT
T ss_pred cHH--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH-HH--HHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHH
Confidence 000 12345677777778888999999999999998753211 11 1335677777777 778889999999999987
Q ss_pred CCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHh
Q 002999 312 RIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNL 389 (859)
Q Consensus 312 ~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~L 389 (859)
..-.. . .....++.+..++.+.++.++..++.+|+.++..-.... .....+|.|..++. +..++..|+.+|..+
T Consensus 155 ~~~~~--~-~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l 230 (588)
T 1b3u_A 155 PRVSS--A-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN-VKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230 (588)
T ss_dssp TTSCH--H-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH-HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHH
T ss_pred HhcCH--H-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 54221 1 223467788888899999999999999999986543322 23344688888888 778999999999998
Q ss_pred hCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCC
Q 002999 390 SGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVS 469 (859)
Q Consensus 390 s~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~ 469 (859)
+...... .....++|.+..++. +.++.++..++.+|..++...+. .......++.++.++++.+
T Consensus 231 ~~~~~~~--~~~~~~~~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~l~~~l~~~l~d~~ 294 (588)
T 1b3u_A 231 AQLLPQE--DLEALVMPTLRQAAE---DKSWRVRYMVADKFTELQKAVGP-----------EITKTDLVPAFQNLMKDCE 294 (588)
T ss_dssp HHHSCHH--HHHHHTHHHHHHHHT---CSSHHHHHHHHHTHHHHHHHHCH-----------HHHHHTHHHHHHHHHTCSS
T ss_pred HHhCCHH--HHHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHhCc-----------ccchhHHHHHHHHHhCCCc
Confidence 7643221 122346777777774 36689999999999998764211 0123457889999999999
Q ss_pred hHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHH
Q 002999 470 PQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLF 549 (859)
Q Consensus 470 ~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~L 549 (859)
++++..++++|..++..-... .+........++.+..+++++++.+|..++++|..++...+.+.. ....++.|
T Consensus 295 ~~vr~~a~~~l~~~~~~~~~~--~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~p~l 368 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENLSAD--CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT----IEHLLPLF 368 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTT--THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH----HHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChh--hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH----HHHHHHHH
Confidence 999999999999887653210 000001123568888899999999999999999999754443321 11467888
Q ss_pred HHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCC
Q 002999 550 KDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSV 629 (859)
Q Consensus 550 v~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~ 629 (859)
..++.+.+. +++..++.+|+.+...-. ........+|.+..++.+. ...+...++.++..+...-
T Consensus 369 ~~~l~d~~~--~Vr~~a~~~l~~l~~~~~--~~~~~~~~lp~l~~~~~d~-----------~~~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 369 LAQLKDECP--EVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVELAEDA-----------KWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp HHHHTCSCH--HHHHHHHTTCHHHHHHSC--HHHHHHHHHHHHHHHHTCS-----------SHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCch--HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhcCC-----------CchHHHHHHHHHHHHHHHc
Confidence 999987765 899988888887754210 0111234556666555431 1123445555555544321
Q ss_pred ChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCcc
Q 002999 630 NPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPI 709 (859)
Q Consensus 630 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (859)
.++ .....++|.+..+|.++ ++.+|..|+.+|+.+.......
T Consensus 434 ~~~----~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~--------------------------------- 475 (588)
T 1b3u_A 434 GVE----FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE--------------------------------- 475 (588)
T ss_dssp CGG----GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH---------------------------------
T ss_pred CHH----HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch---------------------------------
Confidence 111 01124689999999986 9999999999999987642110
Q ss_pred CCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhH
Q 002999 710 HNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLL 789 (859)
Q Consensus 710 ~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 789 (859)
+ .....++.|++++.+++..++..++.+++.++.. . +... .....++.|.+.+. .+++++
T Consensus 476 ----------~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~----~--~~~~-~~~~~~~~l~~~l~-d~~~~V 535 (588)
T 1b3u_A 476 ----------W--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV----C--GQDI-TTKHMLPTVLRMAG-DPVANV 535 (588)
T ss_dssp ----------H--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH----H--HHHH-HHHHTHHHHHHGGG-CSCHHH
T ss_pred ----------h--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh----c--CHHH-HHHHHHHHHHhhCC-CCCchH
Confidence 0 0124578888888999999999999999999854 1 1122 22357788989887 488999
Q ss_pred HHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002999 790 QERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLK 843 (859)
Q Consensus 790 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~ 843 (859)
|..++++|..++..-.. .+. ...+.+.|..++.+.|+.+|..|..+|..|.
T Consensus 536 r~~a~~~l~~l~~~~~~--~~~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDN--STL-QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHGGGSCH--HHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhch--hhh-HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99999999999853211 111 1344567778889999999999999999875
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.82 E-value=5e-19 Score=179.01 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=169.7
Q ss_pred hCchHHHHHHhcCCCHHHHHHHHHHHHHhcc-ChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcC
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCI-DEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER-IEEI 316 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~ 316 (859)
.|..+.|+.+|++++.+++..|+++|.+++. +++.+..+. +.|+++.|+.+|+ ++++.++..|+.+|.||+. ++++
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVI-DAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHH
Confidence 5789999999999999999999999999995 456666666 5899999999999 7899999999999999995 5678
Q ss_pred hHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCcc-HHHHH-HhhHHHHHHHhC--ChhHHHHHHHHHHHhhCC
Q 002999 317 VQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSC-KEHIA-RQCAKVLVELLS--KPAGRAASLKALYNLSGL 392 (859)
Q Consensus 317 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~-~~~i~-~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~ 392 (859)
+..+++.|+++.|+.+|.++++.++..++++|++++.+++. +..+. .++++.|+++|+ ++.++..|+++|.||+..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88999999999999999999999999999999999976544 44554 455799999999 889999999999999998
Q ss_pred C-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 002999 393 D-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSN 436 (859)
Q Consensus 393 ~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~ 436 (859)
. +++..+.+.|+++.|+.++.+ .+..+++.|+++|.+|+.+
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHCC-
T ss_pred CcHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHhcC
Confidence 5 678889999999999999964 5689999999999999753
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.82 E-value=2.7e-19 Score=180.99 Aligned_cols=194 Identities=18% Similarity=0.189 Sum_probs=171.5
Q ss_pred hcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhcc-C
Q 002999 193 NAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCI-D 270 (859)
Q Consensus 193 ~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~ 270 (859)
..|..+.|+.+|++++. .++..|+++|.+++.. ++++..+.+.|+++.|+.+|++++++++..|+++|.+++. +
T Consensus 10 ~~~~~~~l~~LL~s~~~----~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQ----QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp ---CHHHHHHHTTCSCH----HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccchhHHHHHHhcCCCH----HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 45788999999999988 9999999999999955 8889999999999999999999999999999999999996 4
Q ss_pred hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHH
Q 002999 271 EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVG 349 (859)
Q Consensus 271 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~ 349 (859)
++.+..+. ..|+++.|+.+|+ ++++.++..|+++|.||+.. ++.+..+.+.|+++.|+.+|.+++++++..++++|.
T Consensus 86 ~~~~~~i~-~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 86 NEQIQAVI-DAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp HHHHHHHH-HTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cHHHHHHH-HCCCHHHHHHHHc-CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56677776 5899999999999 78999999999999999965 455678899999999999999999999999999999
Q ss_pred HhcCC-CccHHHHHH-hhHHHHHHHhC--ChhHHHHHHHHHHHhhCC
Q 002999 350 KLTLT-NSCKEHIAR-QCAKVLVELLS--KPAGRAASLKALYNLSGL 392 (859)
Q Consensus 350 ~la~~-~~~~~~i~~-~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~ 392 (859)
+++.. ++++..+.+ ++++.|++++. ++.+++.|+++|.+|+.+
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 99987 455666655 45799999999 889999999999999853
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.82 E-value=7.3e-21 Score=160.50 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=68.2
Q ss_pred cccCCCCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHH
Q 002999 67 EDCHILPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVN 146 (859)
Q Consensus 67 ~~~~~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~ 146 (859)
+...+| ++|.||||+++|+|||+++|||||||.||++||.. +.+||+|++++...+++||..|++.|+.|+.
T Consensus 7 ~~~~~p--~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~ 78 (85)
T 2kr4_A 7 DYSDAP--DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN------SPTDPFNRQMLTESMLEPVPELKEQIQAWMR 78 (85)
T ss_dssp CCTTCC--TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH------CSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred hhhcCc--hheECcccCchhcCCeECCCCCEECHHHHHHHHhc------CCCCCCCcCCCChHhcchHHHHHHHHHHHHH
Confidence 334444 67999999999999999999999999999999987 6799999999999999999999999999998
Q ss_pred hcc
Q 002999 147 RNV 149 (859)
Q Consensus 147 ~~~ 149 (859)
++.
T Consensus 79 ~~~ 81 (85)
T 2kr4_A 79 EKQ 81 (85)
T ss_dssp HHH
T ss_pred Hhh
Confidence 874
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.82 E-value=8.4e-21 Score=164.87 Aligned_cols=71 Identities=28% Similarity=0.416 Sum_probs=66.6
Q ss_pred CCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhccc
Q 002999 74 FKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNVE 150 (859)
Q Consensus 74 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~~ 150 (859)
|++|.||||+++|+|||+++|||||||.||++||.. +.+||+|+++++..+++||..|++.|+.|+.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN------SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS------CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc------CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 467999999999999999999999999999999986 67999999999999999999999999999998753
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.81 E-value=3.1e-17 Score=192.95 Aligned_cols=536 Identities=13% Similarity=0.077 Sum_probs=368.1
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhH
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKS 276 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 276 (859)
+..|+..|++++. .+|..|+..|..++....... .....++.|...+ +++.+++..++..|..+...-... .
T Consensus 12 i~~l~~~l~s~~~----~~R~~A~~~l~~i~~~~~~~~--~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~-~ 83 (588)
T 1b3u_A 12 IAVLIDELRNEDV----QLRLNSIKKLSTIALALGVER--TRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP-E 83 (588)
T ss_dssp HHHHHHHTTCSCH----HHHHHHHHTHHHHHHHSCHHH--HHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG-G
T ss_pred HHHHHHHhhcccH----HHHHHHHHhHHHHHHHhCHHH--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH-H
Confidence 5678888888887 999999999988764311100 1123466666655 567889999999998776431111 1
Q ss_pred hhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCc
Q 002999 277 VASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNS 356 (859)
Q Consensus 277 i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~ 356 (859)
. ....++.|..++. ++++.++..|..+|.+++..-.. .....-.+|.+..+..+.+...+..++.+|+.++..-.
T Consensus 84 ~--~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 84 Y--VHCLLPPLESLAT-VEETVVRDKAVESLRAISHEHSP--SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp G--GGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTSCH--HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred H--HHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 1 2447788888877 78899999999999999864321 11222345666666677788889999999998876443
Q ss_pred cHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002999 357 CKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVV 434 (859)
Q Consensus 357 ~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~ 434 (859)
. ......++.+..++. ++.++..|+.+|..++...... ......+|.|..++.. ++..++..|+.+|..++
T Consensus 159 ~--~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d---~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 159 S--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASD---EQDSVRLLAVEACVNIA 231 (588)
T ss_dssp H--HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTC---SCHHHHTTHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHH
Confidence 2 123344577778887 8899999999999998654332 2235678888888843 56799999999999887
Q ss_pred cCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC
Q 002999 435 SNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE 514 (859)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 514 (859)
...+.. .....+++.+..++.+.+..++..++.+|..++..... +.. ....++.++.++++++
T Consensus 232 ~~~~~~-----------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~-----~~~l~~~l~~~l~d~~ 294 (588)
T 1b3u_A 232 QLLPQE-----------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EIT-----KTDLVPAFQNLMKDCE 294 (588)
T ss_dssp HHSCHH-----------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHH-----HHTHHHHHHHHHTCSS
T ss_pred HhCCHH-----------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccc-----hhHHHHHHHHHhCCCc
Confidence 643221 12245678888888888889999999999998764211 111 1235789999999999
Q ss_pred hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHH
Q 002999 515 VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVI 594 (859)
Q Consensus 515 ~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~ 594 (859)
+++|..|+++|..++...+.+..........++.+..++.+.+. .++..++.+|+.++..-. ........+|.+..
T Consensus 295 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~--~vR~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~ 370 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASVIMGLSPILG--KDNTIEHLLPLFLA 370 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCH--HHHHHHHTTGGGGHHHHC--HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHH
Confidence 99999999999999744332211100011467888888888775 899999999998874110 11122345666667
Q ss_pred HHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcc
Q 002999 595 TLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGR 674 (859)
Q Consensus 595 lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 674 (859)
++.+. ...+...++.+|..+.....++. ....++|.|.+++.+. ++.+|..++.+|+.++..-.
T Consensus 371 ~l~d~-----------~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~ 434 (588)
T 1b3u_A 371 QLKDE-----------CPEVRLNIISNLDCVNEVIGIRQ----LSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLG 434 (588)
T ss_dssp HHTCS-----------CHHHHHHHHTTCHHHHHHSCHHH----HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCC-----------chHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcC
Confidence 76541 12345556655555543212211 1235789999999986 99999999999998875421
Q ss_pred cccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhh
Q 002999 675 SLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLI 754 (859)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 754 (859)
.. ......++.+..+|.+++..|++.|+.+|..++
T Consensus 435 ~~---------------------------------------------~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 435 VE---------------------------------------------FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp GG---------------------------------------------GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HH---------------------------------------------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 00 001234788899999999999999999999998
Q ss_pred hccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcCChhhHHH
Q 002999 755 IDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRH 834 (859)
Q Consensus 755 ~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~ 834 (859)
.. . +.... ....++.|.+++. +++..+|..+++++..+...-.... ....+.+.|+.++++.++.+|..
T Consensus 470 ~~----~--~~~~~-~~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 470 EK----F--GKEWA-HATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQDI---TTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HH----H--CHHHH-HHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HH----h--CchhH-HHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhhCCCCCchHHHH
Confidence 64 1 11111 2346677777776 5888999999999999975321110 12345678999999999999999
Q ss_pred HHHHHHHHhhh
Q 002999 835 AQEALTNLKQI 845 (859)
Q Consensus 835 A~~~L~~L~~~ 845 (859)
+.++|..+...
T Consensus 539 a~~~l~~l~~~ 549 (588)
T 1b3u_A 539 VAKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHH
Confidence 99999998863
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.80 E-value=2.4e-20 Score=161.35 Aligned_cols=71 Identities=28% Similarity=0.474 Sum_probs=66.5
Q ss_pred CCCcccCcccccccCCCeecCCC-chhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhcc
Q 002999 73 PFKNFLCPLTKQVMKEPVVLESA-QAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 73 ~~~~~~cpi~~~~m~dPv~~~~g-~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
.|++|+||||+++|+|||+++|| |||||.||++||.. +.+||+|++++...+++||..|++.|+.|+.++.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~------~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS------DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT------SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh------CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence 34779999999999999999999 99999999999986 5799999999999999999999999999999875
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=1.8e-16 Score=195.11 Aligned_cols=591 Identities=15% Similarity=0.102 Sum_probs=378.9
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cchHHH--H--HhhCchH
Q 002999 169 GLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EESKKI--M--LEEGVTK 243 (859)
Q Consensus 169 ~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~--i--~~~g~i~ 243 (859)
....+...+..++.......+ .+.++.|+..+.+++. ..++.++.+|..++.+ +..-.. + .-...++
T Consensus 106 vr~~~a~~i~~ia~~~~~~~w----p~ll~~L~~~l~~~~~----~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~ 177 (852)
T 4fdd_A 106 IRATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDY----NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177 (852)
T ss_dssp HHHHHHHHHHHHHHHTTTTTC----TTHHHHHHHHHSCSSH----HHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccc----HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHH
Confidence 334567778777765422221 3578899999998877 8999999999999876 221100 0 0134678
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCc-ChHHHHh
Q 002999 244 SVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEE-IVQPLAA 322 (859)
Q Consensus 244 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~-~~~~i~~ 322 (859)
.++..+++.+.++|..|+.+|..+....... ....-.+.++.|+.++. ++++.++..|+.+|.+++.... ......
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~-~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l- 254 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQA-LMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHM- 254 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH-HHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGH-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHH-
Confidence 8888889999999999999998877543211 11112457888999888 7899999999999999986422 111111
Q ss_pred cCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHH---HhhHHHHHHHhC-----------C-------------
Q 002999 323 AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIA---RQCAKVLVELLS-----------K------------- 375 (859)
Q Consensus 323 ~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~---~~gi~~Lv~lL~-----------~------------- 375 (859)
.+.++.++..+.+.++.++..++..+..++.....+..+. ..-++.++..+. +
T Consensus 255 ~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~ 334 (852)
T 4fdd_A 255 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISD 334 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CC
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccccc
Confidence 1477888888888899999999999999987654444432 233577777762 1
Q ss_pred hhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCccccc
Q 002999 376 PAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSE 455 (859)
Q Consensus 376 ~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 455 (859)
-.++..|..+|..|+..... .+. ..+++.+..++.+ .++.+++.|+.+|.+++........ -.-.
T Consensus 335 ~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~---~~~~~R~aa~~alg~i~~~~~~~~~---------~~l~ 399 (852)
T 4fdd_A 335 WNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFH---HEWVVKESGILVLGAIAEGCMQGMI---------PYLP 399 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHTTTTTHHHHG---------GGHH
T ss_pred chHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhcchHHHH---------HHHH
Confidence 13578888899888754321 111 1345666666643 5689999999999999876643211 1236
Q ss_pred chHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHH
Q 002999 456 SIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQD 535 (859)
Q Consensus 456 ~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~ 535 (859)
.+++.++.++++.++.++..++++|.+++..-... .... .-.+.++.|+..+.++++.+|..|+++|.++++..+..
T Consensus 400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~--~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ-PPDT--YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS-CTTT--THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc-hHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 78899999999999999999999999998641100 0000 01135688888898889999999999999998544433
Q ss_pred HHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcC----------------------------CcHHH-------
Q 002999 536 LAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQL----------------------------SEEEV------- 580 (859)
Q Consensus 536 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~----------------------------~~~~~------- 580 (859)
....+ .+.++.|+.++...+. +....+..+++.++. .+...
T Consensus 477 l~~~l--~~ll~~L~~~l~~~~~--~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l 552 (852)
T 4fdd_A 477 LVPYL--AYILDTLVFAFSKYQH--KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECL 552 (852)
T ss_dssp GGGGH--HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHH
T ss_pred hHhHH--HHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 32222 1567777888876554 333334444444421 00000
Q ss_pred HHHHH---hc-------cHHHHHHHHhhhcc-------cccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCch
Q 002999 581 KTLLE---AT-------FIKWIVITLQTHKS-------SFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLM 643 (859)
Q Consensus 581 ~~l~~---~g-------~v~~L~~lL~~~~~-------~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i 643 (859)
..+.. .+ .++.++.++...-. .... .......+...++.++..++..-..+....+.+.+++
T Consensus 553 ~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~-~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~ 631 (852)
T 4fdd_A 553 SSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ-YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL 631 (852)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHH
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHH
Confidence 00000 11 11222223322100 0000 0001122344444444444433234555555567899
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhh
Q 002999 644 TIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLL 723 (859)
Q Consensus 644 ~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 723 (859)
+.+.+.+.++ ++.+|..|..+++.++......-. -.
T Consensus 632 ~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~-------------------------------------------~~ 667 (852)
T 4fdd_A 632 TLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVK-------------------------------------------PC 667 (852)
T ss_dssp HHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGTG-------------------------------------------GG
T ss_pred HHHHHHhCCC-ChhHHHHHHHHHHHHHHHhhHHHH-------------------------------------------HH
Confidence 9999999986 899999999999999864321100 00
Q ss_pred hcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcC--chhHHHHHHHHHHHHH
Q 002999 724 KSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVR--PGLLQERTVWMLERVL 801 (859)
Q Consensus 724 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~~~A~~~l~~~~ 801 (859)
-...++.|++.|..++.+++..|+.+++.++...+.+..... ...+++|++++.+ + ...++++|..++.++.
T Consensus 668 l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~-----~~il~~L~~~l~~-~~~~~~~~~~a~~~igrl~ 741 (852)
T 4fdd_A 668 IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-----PMVLHQLVEIINR-PNTPKTLLENTAITIGRLG 741 (852)
T ss_dssp HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGT-----HHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHH-----HHHHHHHHHHhCC-CCCCchHHHHHHHHHHHHH
Confidence 122578889999888999999999999999865122222211 2567788898873 4 3579999999999998
Q ss_pred hc-cccccccccchhhHHHHHHHhhc-CChhhHHHHHHHHHHHhhh
Q 002999 802 RV-EGHSHRYSLNQSLVRALVEAFKH-GNANAKRHAQEALTNLKQI 845 (859)
Q Consensus 802 ~~-~~~~~~~~~~~~~~~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~ 845 (859)
.. .+....+ -..++.++...|.. +|..-|..|.+.|..|-+.
T Consensus 742 ~~~~~~~~~~--l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~ 785 (852)
T 4fdd_A 742 YVCPQEVAPM--LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV 785 (852)
T ss_dssp HHCHHHHGGG--HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HhCHHHhCcc--HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 64 2221111 23455788888875 6677899999999888765
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=7.6e-17 Score=198.35 Aligned_cols=616 Identities=13% Similarity=0.054 Sum_probs=383.0
Q ss_pred CcchhhhHhHHHHHHHhccc-cc-HHHHHhhhhc-CCCccchHHHHHHHHHHHHhc-----CCcchhHHHhcCcHHHHHH
Q 002999 131 LKPNIGLAGAIEEWVNRNVE-VQ-VSTVVETLRK-ENPEVDGLDKALDIVFKISEE-----HPSNRYRVRNAGVVLLIVK 202 (859)
Q Consensus 131 l~pn~~l~~~I~~w~~~~~~-~~-i~~l~~~L~~-~~~~~~~~~~al~~L~~l~~~-----~~~~r~~i~~~g~i~~Lv~ 202 (859)
+.||...|+..+++..+-.. .+ ...+...+.. .+.+......|+-.|++.... ++..|.. .-+.++.
T Consensus 23 ~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~-----ik~~ll~ 97 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDF-----IKSECLN 97 (852)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHH-----HHHHHHT
T ss_pred hCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHH-----HHHHHHH
Confidence 34566677776666654322 11 2234444442 233323222356667776542 1112222 2245666
Q ss_pred HHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhh-h--Hh-h
Q 002999 203 LLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYC-K--SV-A 278 (859)
Q Consensus 203 lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-~--~i-~ 278 (859)
.|.+.+. .+|..++.++..++..+... .-.+.++.|+..+.+++...++.++.+|..++.+.... . .+ .
T Consensus 98 ~l~~~~~----~vr~~~a~~i~~ia~~~~~~---~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~ 170 (852)
T 4fdd_A 98 NIGDSSP----LIRATVGILITTIASKGELQ---NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDR 170 (852)
T ss_dssp TTTCSSH----HHHHHHHHHHHHHHHHTTTT---TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSS
T ss_pred HHcCCCH----HHHHHHHHHHHHHHHhcCcc---ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcc
Confidence 6776665 89999999999987653111 11457899999999999999999999999988653211 0 00 0
Q ss_pred hhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHh--cCChHHHHHHhccCChHHHHHHHHHHHHhcCCCc
Q 002999 279 SEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAA--AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNS 356 (859)
Q Consensus 279 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~ 356 (859)
.....++.|+++++ +.++.++..|+.+|.++...... .+.. .+.++.|+.++.+++++++..++.+|.+++....
T Consensus 171 ~~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~--~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~ 247 (852)
T 4fdd_A 171 PLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQ--ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM 247 (852)
T ss_dssp CHHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCH--HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH
Confidence 02457888888888 78999999999999988754321 1111 2467888888899999999999999999986443
Q ss_pred cHHH-HHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHH--cCcHHHHHHHHh----------cc--CC--
Q 002999 357 CKEH-IARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVD--SALLPALTDILF----------KS--HD-- 417 (859)
Q Consensus 357 ~~~~-i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~G~i~~Lv~lL~----------~~--~~-- 417 (859)
.... .....++.++.+++ ++.++..|+..+..++.....+..+.. ...+|.|+..+. .. .+
T Consensus 248 ~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~ 327 (852)
T 4fdd_A 248 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSG 327 (852)
T ss_dssp HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccc
Confidence 2110 01234577777777 778999999999999876543332211 144566666652 11 00
Q ss_pred -----CCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 002999 418 -----ASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAES 492 (859)
Q Consensus 418 -----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~ 492 (859)
....++..|+.+|..++...+. .+ -..+++.+..++.+.++.+++.++++|..++..... .
T Consensus 328 ~dd~~~~~~vr~~a~~~L~~la~~~~~-----------~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~ 393 (852)
T 4fdd_A 328 GDDTISDWNLRKCSAAALDVLANVYRD-----------EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--G 393 (852)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHGG-----------GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--H
T ss_pred cccccccchHHHHHHHHHHHHHHhccH-----------HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--H
Confidence 2345788899999988765421 11 235677788888888999999999999999987532 1
Q ss_pred HHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHH
Q 002999 493 VATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILAN 572 (859)
Q Consensus 493 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~ 572 (859)
+... -.+.++.|+.+++++++.+|..|+++|..++............ .+.++.|+..+.+++. .++..|+++|++
T Consensus 394 ~~~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~-~~ll~~L~~~L~d~~~--~vr~~a~~aL~~ 468 (852)
T 4fdd_A 394 MIPY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL-KPLMTELLKRILDSNK--RVQEAACSAFAT 468 (852)
T ss_dssp HGGG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH-HHHHHHHHHHHTCSSH--HHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHhCCCH--HHHHHHHHHHHH
Confidence 1111 1246889999999999999999999999998433221101111 1567888888887765 899999999999
Q ss_pred hcCCcHH-HHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccC--CChhhHHHHHhcCchHHHHH-
Q 002999 573 IQLSEEE-VKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRS--VNPQTLGMVREQRLMTIFRD- 648 (859)
Q Consensus 573 L~~~~~~-~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~--~~~~~~~~i~~~~~i~~Lv~- 648 (859)
++..... +...+ .+.++.|+.++..... ....+.-.+++.+...... ..++... .++|.|.+
T Consensus 469 l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~--------~~~~~~~~ai~~l~~~~~~~~~~~~~~~-----~l~p~l~~~ 534 (852)
T 4fdd_A 469 LEEEACTELVPYL-AYILDTLVFAFSKYQH--------KNLLILYDAIGTLADSVGHHLNKPEYIQ-----MLMPPLIQK 534 (852)
T ss_dssp HHHHHGGGGGGGH-HHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHHHHHGGGGCCHHHHH-----HHHHHHHHH
T ss_pred HHHHhhHhhHhHH-HHHHHHHHHHHHHhCh--------HHHHHHHHHHHHHHHHhhhhhccHHHHH-----HHHHHHHHH
Confidence 9752211 11111 2344555555544211 0111122333333322211 1222222 45677764
Q ss_pred --hhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcC
Q 002999 649 --QLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSN 726 (859)
Q Consensus 649 --lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 726 (859)
.+.++ ++.++ .+..+++.++......... .-..
T Consensus 535 ~~~l~d~-~~~~~-~~~~~l~~i~~~~g~~~~~-------------------------------------------~~~~ 569 (852)
T 4fdd_A 535 WNMLKDE-DKDLF-PLLECLSSVATALQSGFLP-------------------------------------------YCEP 569 (852)
T ss_dssp HHHSCTT-CTTHH-HHHHHHHHHHHHHGGGGHH-------------------------------------------HHHH
T ss_pred HHhcccc-cHHHH-HHHHHHHHHHHHHhHhHHH-------------------------------------------HHHH
Confidence 44553 55554 6677777766542210000 0011
Q ss_pred CchHHHhhhc-----------------cCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhH
Q 002999 727 CIKPLVDLLA-----------------EEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLL 789 (859)
Q Consensus 727 ~i~~Lv~lL~-----------------~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 789 (859)
.++.++.++. .++.+++..++.+|+.++..-+. .....+.+.+.++.+++++. ++++.+
T Consensus 570 i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~---~~~~~~~~~~~~~~l~~~l~-~~~~~v 645 (852)
T 4fdd_A 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG---NIEQLVARSNILTLMYQCMQ-DKMPEV 645 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG---GGHHHHHTCCHHHHHHHHTT-CSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH---hHHHHhcCCcHHHHHHHHhC-CCChhH
Confidence 1222333332 23677899999999999864111 11233445678888889887 588999
Q ss_pred HHHHHHHHHHHHhc-cccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHhhh
Q 002999 790 QERTVWMLERVLRV-EGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLKQI 845 (859)
Q Consensus 790 ~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 845 (859)
++.|.+++..+.+. .+....|- ..+.+.|++.+..+++.++..|+.++..+..-
T Consensus 646 r~~a~~~l~~l~~~~~~~~~~~l--~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~ 700 (852)
T 4fdd_A 646 RQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQ 700 (852)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 99999999999853 22222222 22457888999888899999999999998654
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.78 E-value=3e-18 Score=181.14 Aligned_cols=177 Identities=12% Similarity=0.096 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhcCCcchhHHHhcCcHHHHHH-HHhcCCCCcchHHHHHHHHHHHhcccC-cchHHHHHhhCchHHHHHHh
Q 002999 172 KALDIVFKISEEHPSNRYRVRNAGVVLLIVK-LLKSSSKSVGTILRSKALMALLSMAKD-EESKKIMLEEGVTKSVIHSL 249 (859)
Q Consensus 172 ~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~g~i~~Lv~lL 249 (859)
.|+..|..++. +..+...+.+.|++|+|+. +|+++++ .+|..|+++|++++.+ +.++..+++.|++++|+.+|
T Consensus 59 ~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~----~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 59 GALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAA----GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSH----HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 48999999987 4457888899999999999 9999887 9999999999999987 78899999999999999999
Q ss_pred cCC-CHHHHHHHHHHHHHhccCh-hhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcCCh
Q 002999 250 IGN-SEKEKEYAVKLLLEFCIDE-AYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER-IEEIVQPLAAAGRF 326 (859)
Q Consensus 250 ~~~-~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i 326 (859)
+++ +..+++.|+++|.+++.+. ...+.+. ..|+++.|+.+|+ ++++.++..|+++|.+|+. +++.+..+++.|++
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~-~~ggi~~L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 964 7899999999999999765 4455555 4899999999999 7899999999999999986 46778899999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCC
Q 002999 327 EPLINRLCQGSDNVQIEMAFLVGKLTLTN 355 (859)
Q Consensus 327 ~~Lv~lL~~~~~~~~~~aa~~L~~la~~~ 355 (859)
++|+.+|.+++..++..++.+|++|+...
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999873
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.77 E-value=1.1e-17 Score=176.81 Aligned_cols=221 Identities=17% Similarity=0.108 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHH-HhcCCCHHHHHHHHHHHHHhccChh-hhhHhhhhhChHHHHHHhh
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIH-SLIGNSEKEKEYAVKLLLEFCIDEA-YCKSVASEKGALVLLSSMT 291 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL 291 (859)
+.+..|+..|..++.+.+|...+.+.|+++.|+. +|+++++.++..|+++|.+++.+++ .++.+. ..|+++.|+.+|
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv-~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL-GLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH-HCCCHHHHHHHH
Confidence 6789999999999999889999999999999999 9999999999999999999998754 555555 589999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC-CccHHHHHHhh-HHH
Q 002999 292 GNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT-NSCKEHIARQC-AKV 368 (859)
Q Consensus 292 ~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~-~~~~~~i~~~g-i~~ 368 (859)
+.+.++.+++.|+++|+||+.+ +.....+.+.|++|+|+.+|.+++..++..++++|++++.+ ++.+..+.+.| +++
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 9435789999999999999975 45567899999999999999999999999999999999875 45567776655 699
Q ss_pred HHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhc-----c-CCCCHHHHHHHHHHHHHhhcC
Q 002999 369 LVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFK-----S-HDASPELKELAAATIANVVSN 436 (859)
Q Consensus 369 Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-----~-~~~~~~~~~~a~~~L~nL~~~ 436 (859)
|+.+|+ ++.+++.|+++|.+|+............+. +.|..+|.. . .+...++.+.|..++.++...
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~-~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE-LGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG-GCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccH-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 999999 889999999999999987432222222221 122333321 1 122356777788888776543
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.76 E-value=3.2e-19 Score=170.01 Aligned_cols=72 Identities=28% Similarity=0.431 Sum_probs=66.2
Q ss_pred CCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhcc
Q 002999 73 PFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 73 ~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
.|++|+||||+++|+|||+++|||||||.||++||..+ | .+||+|+++++..+++||..|++.|+.|+.+|+
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~---~--~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---G--HFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---C--SBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC---C--CCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence 34779999999999999999999999999999999872 2 379999999998999999999999999999875
No 47
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-18 Score=146.11 Aligned_cols=75 Identities=29% Similarity=0.483 Sum_probs=64.8
Q ss_pred CcccCcccccccCCCeecC-CCchhcHHHHHHHHHhcccCCCCCCCCCCCcc---cCCCCCcchhhhHhHHHHHHHhcc
Q 002999 75 KNFLCPLTKQVMKEPVVLE-SAQAYERKAIEYWFERCLEDGRDPTCPVTGQV---LKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~-~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~---l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
++|.||||+++|+|||+++ |||||||.||++||..+.+.+...+||+|+.+ +...+|+||..|++.|+.|++++.
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~~ 84 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKRH 84 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHhc
Confidence 6799999999999999995 99999999999999874222235799996655 888999999999999999998875
No 48
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.70 E-value=4.1e-18 Score=198.40 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=94.4
Q ss_pred ChhHHHHHHHHHhhhhhccc-chhhHHHHHHHHHHHHhcccCcchhccCcccccccccCCCCCCcccCcccccccCCCee
Q 002999 13 NHNELTEQIKQLKSDLSQSS-SVSERRILTSLQRILDTWSVVPDVAALNWDSELEEDCHILPFKNFLCPLTKQVMKEPVV 91 (859)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpi~~~~m~dPv~ 91 (859)
|..+++.++++....+.++. ..+..+.+..++++.+.++..+.... +++.+..++| ++|+||||+++|+|||+
T Consensus 833 DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~----~~e~~~~~iP--~~F~cPIs~~lM~DPVi 906 (968)
T 3m62_A 833 DERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADE----EEDLEYGDVP--DEFLDPLMYTIMKDPVI 906 (968)
T ss_dssp CTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCSC--GGGBCTTTCSBCSSEEE
T ss_pred cCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH----hhhccccCCc--HHhCCcchhhHHhCCeE
Confidence 34556666666666665433 24445566666666666654332222 2233445566 67999999999999999
Q ss_pred cCCC-chhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhcc
Q 002999 92 LESA-QAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 92 ~~~g-~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
+|+| +||||++|++|+.+ +.+||+|+++|+..+++||++||+.|++|+.++.
T Consensus 907 lpsG~~TydR~~I~~wl~~------~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 907 LPASKMNIDRSTIKAHLLS------DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp CTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred cCCCCEEECHHHHHHHHhc------CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 9997 79999999999987 6799999999999999999999999999999875
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.68 E-value=1.1e-13 Score=170.88 Aligned_cols=615 Identities=11% Similarity=0.070 Sum_probs=356.1
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHH--hcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVR--NAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD 229 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~--~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~ 229 (859)
-++.++..+.+.+.+......++..|..++..-.. ..+. -...++.+...+.+++. +..+|..|+.+|..++..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~--~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEP--SNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCS--CHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHH
Confidence 35666777765420223334588889888875321 1111 12355667777766521 128999999999988754
Q ss_pred -cch-HHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccCh-h-hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHH
Q 002999 230 -EES-KKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE-A-YCKSVASEKGALVLLSSMTGNLELPALSNLADE 305 (859)
Q Consensus 230 -~~~-r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 305 (859)
+.+ .........++.+...+.+++.+++..++.+|..+.... + ....+ ....++.++..+. +.++.++..++.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~~~~~~~~-~~~~~v~~~al~ 281 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM--GPALFAITIEAMK-SDIDEVALQGIE 281 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH--TTTHHHHHHHHHT-CSSHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHhc-CCchHHHHHHHH
Confidence 211 111111235777777888888999999999999887642 2 12222 1267888888877 778899999999
Q ss_pred HHHHhcCCCc-------------------ChHHH--HhcCChHHHHHHhcc-------CChHHHHHHHHHHHHhcCCCcc
Q 002999 306 VFKKMERIEE-------------------IVQPL--AAAGRFEPLINRLCQ-------GSDNVQIEMAFLVGKLTLTNSC 357 (859)
Q Consensus 306 aL~nL~~~~~-------------------~~~~i--~~~G~i~~Lv~lL~~-------~~~~~~~~aa~~L~~la~~~~~ 357 (859)
.+.+++.... ....+ .-...++.++..|.. .+..++..++.+|..++..-..
T Consensus 282 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~ 361 (876)
T 1qgr_A 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH
Confidence 9888874310 00011 012356777787742 3446788888888887653221
Q ss_pred HHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc-c-hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002999 358 KEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDD-N-ATILVDSALLPALTDILFKSHDASPELKELAAATIANV 433 (859)
Q Consensus 358 ~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~-~-~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL 433 (859)
.+....++.+...+. +..++..|+.+|..++.... . .... -..++|.|+..|.. +...++..|+++|.++
T Consensus 362 --~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d---~~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 362 --DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKD---PSVVVRDTAAWTVGRI 435 (876)
T ss_dssp --GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTC---SSHHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCC---CCHHHHHHHHHHHHHH
Confidence 122233466667776 78899999999999987653 2 1121 23578888888853 5689999999999999
Q ss_pred hcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh------------hHHHHHHHHhhCC
Q 002999 434 VSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQ------------AAESVATHIKSGD 501 (859)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~------------~~~~~~~~i~~~g 501 (859)
+......... .-.-..+++.|+..+.+. +.++..++++|.+++.... ....+...+ ..
T Consensus 436 ~~~~~~~~~~-------~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 505 (876)
T 1qgr_A 436 CELLPEAAIN-------DVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--EL 505 (876)
T ss_dssp HHHCGGGTSS-------TTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HH
T ss_pred HHhCchhccc-------HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HH
Confidence 8764331100 011256788888888774 8999999999998875311 000000000 01
Q ss_pred CHHHHHHhhcCC---ChhHH--------------------------------------------------------HHHH
Q 002999 502 GIKYIIQFLEHP---EVEHR--------------------------------------------------------TYAF 522 (859)
Q Consensus 502 ~i~~Lv~lL~~~---~~~v~--------------------------------------------------------~~A~ 522 (859)
.++.|+.++... +..++ ..++
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~ 585 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH
Confidence 234444444332 12333 3344
Q ss_pred HHHHHHhhhcc-HHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHH-HHHHHHhccHHHHHHHHhhhc
Q 002999 523 RLTRILSERIG-QDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEE-VKTLLEATFIKWIVITLQTHK 600 (859)
Q Consensus 523 ~~L~~Ls~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~-~~~l~~~g~v~~L~~lL~~~~ 600 (859)
.++..+....+ ......+ ...++.|+.++++......++..++.+++.++..... ....++ ..++.++..|.+..
T Consensus 586 ~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 586 ATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYA 662 (876)
T ss_dssp HHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcc
Confidence 44444443222 2221111 1357778888877641025777888888888752111 111111 24556666665420
Q ss_pred ccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCC-ChHHHHHHHHHHhhhhhhhccccccc
Q 002999 601 SSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFP-SKARVKQLAAHGLKNLSEAGRSLCAE 679 (859)
Q Consensus 601 ~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~vk~~Aa~aL~~ls~~~~~~~~~ 679 (859)
...+...++.++..++..........+ ..+++.|++.|.++ .+..+|..+.+++++++......-.
T Consensus 663 ----------~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~- 729 (876)
T 1qgr_A 663 ----------EYQVCLAAVGLVGDLCRALQSNIIPFC--DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK- 729 (876)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG-
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHH-
Confidence 112345555555555432122333222 36788899999872 2568999999999999764321000
Q ss_pred CCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCC-----------hhHHHHHHH
Q 002999 680 DTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEED-----------TNVEIAAVE 748 (859)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----------~~v~~~A~~ 748 (859)
-.-...+++|.+.+..+. ..+++.++.
T Consensus 730 ------------------------------------------~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~ 767 (876)
T 1qgr_A 730 ------------------------------------------KYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE 767 (876)
T ss_dssp ------------------------------------------GGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Confidence 001234666666665432 278888888
Q ss_pred HHHhhhhccCcch---hhHHHHHHh--cCChHHHHHHhhhcC--chhHHHHHHHHHHHHHhcc-c-cccccccchhhHHH
Q 002999 749 ALSTLIIDTSKNF---KRGVDELER--EGALDAVVDLFTEVR--PGLLQERTVWMLERVLRVE-G-HSHRYSLNQSLVRA 819 (859)
Q Consensus 749 aL~~L~~d~~~~~---~~~~~~i~~--~g~i~~L~~ll~~~~--~~~~~~~A~~~l~~~~~~~-~-~~~~~~~~~~~~~~ 819 (859)
++..++..-+... .+....+.. ..-++.+..+.. ++ ++.+|..|+.+|..++... . ....|- ...++.+
T Consensus 768 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~i~~ 845 (876)
T 1qgr_A 768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG-DEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE-ARPMIHE 845 (876)
T ss_dssp HHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT-CSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH-TSHHHHH
T ss_pred HHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHH-hcHHHHH
Confidence 8887764300000 000000000 011122323333 34 6789999999999998633 1 111221 1245688
Q ss_pred HHH-HhhcCChhhHHHHHHHHHHHhhhcCCc
Q 002999 820 LVE-AFKHGNANAKRHAQEALTNLKQISGLS 849 (859)
Q Consensus 820 Lv~-ll~~~~~~~~~~A~~~L~~L~~~~~~~ 849 (859)
|+. .+.+.++.+|..|+.++.+++++...|
T Consensus 846 ll~~~l~~~~~~~r~~a~~a~~~~~~~~~~~ 876 (876)
T 1qgr_A 846 LLTEGRRSKTNKAKTLARWATKELRKLKNQA 876 (876)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHHhhcCC
Confidence 888 999999999999999999999986543
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.68 E-value=1.3e-13 Score=155.28 Aligned_cols=437 Identities=12% Similarity=0.083 Sum_probs=296.6
Q ss_pred ccHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-
Q 002999 151 VQVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD- 229 (859)
Q Consensus 151 ~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~- 229 (859)
.+|+.+..+|.++.--.|+- .|+..|+.+++ .+|..+. .++++.|+..|+.+..|. ++...++.+|.++...
T Consensus 21 etI~~L~~Rl~~~tl~eDRR-~Av~~Lk~~sk---~y~~~Vg-~~~l~~li~~L~~d~~D~--e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRR-NAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTDRSDS--EIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHH-HHHHHHHHTTT---TTTTHHH-HHTHHHHHHHHHSCTTCH--HHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHhhccchhHHH-HHHHHHHHHHH---HhHHHhh-hhhHHHHHHHHhcccccH--HHHHHHHHHHHHHhCCC
Confidence 45777888888766555665 59999999965 3554444 478899999998875433 8889999999886553
Q ss_pred cc-----------------hH-HHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccCh-h-hhhHhhhhhChHHHHHH
Q 002999 230 EE-----------------SK-KIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE-A-YCKSVASEKGALVLLSS 289 (859)
Q Consensus 230 ~~-----------------~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~-~~~~i~~~~g~i~~Lv~ 289 (859)
++ +. ..+.+.+.|+.|+.+|++.+-.+|..++.+|..|+... + ..+.|...+++|+.||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 21 11 12345678999999999999999999999999998763 3 67778767899999999
Q ss_pred hhcCCCChHHHHHHHHHHHHhcCCCcChHHHHh-cCChHHHHHHhccCCh----HHHHHHHHHHHHhcCCC-ccHHHHHH
Q 002999 290 MTGNLELPALSNLADEVFKKMERIEEIVQPLAA-AGRFEPLINRLCQGSD----NVQIEMAFLVGKLTLTN-SCKEHIAR 363 (859)
Q Consensus 290 lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~----~~~~~aa~~L~~la~~~-~~~~~i~~ 363 (859)
+|. +....++..++..|.+|+.++.+.++++. .|+++.|+.++.+... .+...+...|.||...+ .|+..+.+
T Consensus 174 lL~-d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 174 LLA-DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GGG-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999 77888999999999999988777666555 5999999999975443 77888999999999876 57888887
Q ss_pred hh-HHHHHHHhC-Chh-------HHHH---HHHHHHHhhCCC-------cchHHHHHcCcHHHHHHHHhccCCCCHHHHH
Q 002999 364 QC-AKVLVELLS-KPA-------GRAA---SLKALYNLSGLD-------DNATILVDSALLPALTDILFKSHDASPELKE 424 (859)
Q Consensus 364 ~g-i~~Lv~lL~-~~~-------~~~~---a~~aL~~Ls~~~-------~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~ 424 (859)
.+ ++.|..+|. .++ -..+ ++.++.-|.... .|+..+.+.|+++.|++++.+ ...+..++.
T Consensus 253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~-~~~p~~i~~ 331 (651)
T 3grl_A 253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA-TGVPADILT 331 (651)
T ss_dssp TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC-SSCCHHHHH
T ss_pred cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc-CCCCHHHHH
Confidence 55 799999988 221 2222 666677776542 357889999999999999987 345678999
Q ss_pred HHHHHHHHhhcCCCcccccccccc-cCcccccchHHHHHHhhcCCC-hHHHHHHHHHHHHhccCCh-hHHHHHHHHhhC-
Q 002999 425 LAAATIANVVSNPGCWELASADKL-GHSMQSESIVSSLLGLLSGVS-PQCQVSTLRILCGIASSPQ-AAESVATHIKSG- 500 (859)
Q Consensus 425 ~a~~~L~nL~~~~~~~~~~~~~~~-~~~l~~~~~i~~Ll~LL~~~~-~~~~~~a~~aL~~La~~~~-~~~~~~~~i~~~- 500 (859)
.|+.+++.+..++...+....... .........+..|+.++.+.. .+++..++.++.....++. ....++..+...
T Consensus 332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~ 411 (651)
T 3grl_A 332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPST 411 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcc
Confidence 999999999887765443211100 000012334555666665544 4889899999988876653 222232222111
Q ss_pred -CC----H---HHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCC-----------CCchHHHHHhhccCCCchh
Q 002999 501 -DG----I---KYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKP-----------FDKLVLFKDKILDNQSANC 561 (859)
Q Consensus 501 -g~----i---~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~-----------~g~i~~Lv~lL~~~~~~~~ 561 (859)
++ + ..|..-+-+.++.----|+.+|..+- ..+.+..+.+.. ...++.+..+|..+++ ..
T Consensus 412 ~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll-~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~-~r 489 (651)
T 3grl_A 412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHAL-QENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSK-IQ 489 (651)
T ss_dssp CCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHH-TTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCC-HH
T ss_pred cccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHH-cCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCc-hh
Confidence 11 1 12334444555533333666666665 344444333221 1236777888876554 24
Q ss_pred HHHHHHHHHHHhcCCcHH-HHHHHHhc-cHHHHHHHHhh
Q 002999 562 ERSDAACILANIQLSEEE-VKTLLEAT-FIKWIVITLQT 598 (859)
Q Consensus 562 ~~~~A~~~L~~L~~~~~~-~~~l~~~g-~v~~L~~lL~~ 598 (859)
++..=+..|+.--.+++. +..++..| .++.|+..+..
T Consensus 490 i~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~ 528 (651)
T 3grl_A 490 TRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAE 528 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHh
Confidence 444444555544444444 47777765 58888777653
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.67 E-value=1.5e-14 Score=169.72 Aligned_cols=367 Identities=11% Similarity=0.107 Sum_probs=252.9
Q ss_pred hCchHHHHHHhcCCCHHHHHHH-HHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYA-VKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV 317 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A-~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~ 317 (859)
.|-+..+-+.|++++...+..+ ..++..+..+.+. ..+.+.+++++. +++..+++.+..++.+++.....
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e- 82 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPD- 82 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHH-
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccCch-
Confidence 3567788888988887766655 4555555555431 346778888888 88999999988888888753211
Q ss_pred HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcc
Q 002999 318 QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDN 395 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~ 395 (859)
.+ .-+++.|.+-|.+.++.++..|..+|+++...+ +.+.-++.+.++|. ++.+++.|+.+|.++....+.
T Consensus 83 -~~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~-----~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~ 154 (591)
T 2vgl_B 83 -MA--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDK-----ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ 154 (591)
T ss_dssp -HH--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGG-----GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC
T ss_pred -HH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHH-----HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh
Confidence 11 124677888889999999999999999886221 23334577888888 899999999999999875432
Q ss_pred hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHH
Q 002999 396 ATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVS 475 (859)
Q Consensus 396 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~ 475 (859)
.+.+.+.++.|..+|. +.+..++..|+.+|..++...+.... .......+..|+..+...++-.+..
T Consensus 155 --~~~~~~~~~~l~~lL~---d~d~~V~~~A~~aL~~i~~~~~~~~~--------~~l~~~~~~~Ll~~l~~~~~~~q~~ 221 (591)
T 2vgl_B 155 --MVEDQGFLDSLRDLIA---DSNPMVVANAVAALSEISESHPNSNL--------LDLNPQNINKLLTALNECTEWGQIF 221 (591)
T ss_dssp --CHHHHHHHHHHHHTTS---CSCHHHHHHHHHHHHHHTTSCCSCCS--------CCCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred --hcccccHHHHHHHHhC---CCChhHHHHHHHHHHHHHhhCCCccc--------hhccHHHHHHHHHcCCCCCchHHHH
Confidence 2334678899999994 46789999999999999887653311 1223566788888888888889999
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhc--cHHHHHhcCCCCchHHHHHhh
Q 002999 476 TLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERI--GQDLAYALKPFDKLVLFKDKI 553 (859)
Q Consensus 476 a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~--~~~~~~~l~~~g~i~~Lv~lL 553 (859)
.+.+|..++..+.. ... ..++.+..++++.++.++..|++++..+.... +.+....+.. ...+.|+.++
T Consensus 222 il~~l~~l~~~~~~--~~~------~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~ 292 (591)
T 2vgl_B 222 ILDCLSNYNPKDDR--EAQ------SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLL 292 (591)
T ss_dssp HHHHHHTSCCCSHH--HHH------HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHT
T ss_pred HHHHHHHhCCCChH--HHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHh
Confidence 99999999865432 111 24678888899999999999999999986321 2222222221 4567888776
Q ss_pred ccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhh
Q 002999 554 LDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQT 633 (859)
Q Consensus 554 ~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~ 633 (859)
. ++. +++..|+..|+.+....+. .+.. .+..+- . ..+.. ..+...++.+|..++...+
T Consensus 293 ~-~d~--~vr~~aL~~l~~i~~~~p~--------~~~~---~~~~~~--~--~~~d~-~~Ir~~al~~L~~l~~~~n--- 350 (591)
T 2vgl_B 293 S-GEP--EVQYVALRNINLIVQKRPE--------ILKQ---EIKVFF--V--KYNDP-IYVKLEKLDIMIRLASQAN--- 350 (591)
T ss_dssp T-SCH--HHHHHHHHHHHHHHHHCCS--------TTTT---CTTTTS--C--CTTSC-HHHHHHHHHHHHHTCCSST---
T ss_pred c-CCc--cHHHHHHHHHHHHHHhChH--------HHHH---HHHhhe--e--ccCCh-HHHHHHHHHHHHHHCChhh---
Confidence 4 444 8999999999988753222 1110 000000 0 00111 3356667778877764322
Q ss_pred HHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 634 LGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 634 ~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
.. .+++.|.+.+.+. ++++|..+++++++++..
T Consensus 351 v~-----~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 351 IA-----QVLAELKEYATEV-DVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp HH-----HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHh
Confidence 22 2467788888885 999999999999998864
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.66 E-value=1.6e-13 Score=169.08 Aligned_cols=603 Identities=12% Similarity=0.084 Sum_probs=362.4
Q ss_pred HHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcc-h--hHHHhcCcHHHHHHHHhcC--CCCcchHHHHHHHHHHHhcc
Q 002999 153 VSTVVETLRKENPEVDGLDKALDIVFKISEEHPSN-R--YRVRNAGVVLLIVKLLKSS--SKSVGTILRSKALMALLSMA 227 (859)
Q Consensus 153 i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~-r--~~i~~~g~i~~Lv~lL~~~--~~~~~~~~~~~al~~L~~L~ 227 (859)
++.+++.+.+.. +......++..|..++..-... + ... ....++.++..+.+. +. .+|..|+.+|..+.
T Consensus 136 l~~L~~~l~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~----~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 136 MKIMVDNTGAEQ-PENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSK----AVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHTSTTS-CHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHHHG
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHHH
Confidence 555666665431 2233445888888888753221 1 001 113456667777665 44 89999999999875
Q ss_pred cC-cch-HHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChh--hhhHhhhhhChHHHHHHhhcCCCChHHHHHH
Q 002999 228 KD-EES-KKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEA--YCKSVASEKGALVLLSSMTGNLELPALSNLA 303 (859)
Q Consensus 228 ~~-~~~-r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 303 (859)
.. +.+ .........++.|...+.+++.+++..++.+|..+..... ....+. ...++.+...+. +.++.++..|
T Consensus 210 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~-~~~~~vr~~a 286 (861)
T 2bpt_A 210 IFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMK-SPNDKVASMT 286 (861)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTT-CSSHHHHHHH
T ss_pred HHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc-CCcHHHHHHH
Confidence 32 111 0001112356677778888899999999999998876432 111111 156777777777 7788999999
Q ss_pred HHHHHHhcCCCcC------------------hHHHHhcCChHHHHHHhccC-------ChHHHHHHHHHHHHhcCCCccH
Q 002999 304 DEVFKKMERIEEI------------------VQPLAAAGRFEPLINRLCQG-------SDNVQIEMAFLVGKLTLTNSCK 358 (859)
Q Consensus 304 ~~aL~nL~~~~~~------------------~~~i~~~G~i~~Lv~lL~~~-------~~~~~~~aa~~L~~la~~~~~~ 358 (859)
+..+..++..... ..... ...+|.|+..|... ...++..++.+|..++..-..
T Consensus 287 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~- 364 (861)
T 2bpt_A 287 VEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN- 364 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-
Confidence 9999988754210 01111 34677888888642 346888888889888753221
Q ss_pred HHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc-ch-HHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002999 359 EHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDD-NA-TILVDSALLPALTDILFKSHDASPELKELAAATIANVV 434 (859)
Q Consensus 359 ~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~-~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~ 434 (859)
.+....++.+.+.+. +...++.|+.+|..++.... .. ...+ ..+++.|+..+.. +...++..++++|..++
T Consensus 365 -~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~ 439 (861)
T 2bpt_A 365 -HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMND---QSLQVKETTAWCIGRIA 439 (861)
T ss_dssp -GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGC---SCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCC---CcHHHHHHHHHHHHHHH
Confidence 111223356666666 77899999999999996543 11 1112 2467777777743 56899999999999988
Q ss_pred cCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChh--HHHHHHHHhhCCCHHHHHHhhcC
Q 002999 435 SNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQA--AESVATHIKSGDGIKYIIQFLEH 512 (859)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~--~~~~~~~i~~~g~i~~Lv~lL~~ 512 (859)
..-..... ..-.-..+++.|+..+.+. +.++..++++|.+++..-.. ...+...+ ...++.|+.++.+
T Consensus 440 ~~~~~~~~-------~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~ 509 (861)
T 2bpt_A 440 DSVAESID-------PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANR 509 (861)
T ss_dssp HHHGGGSC-------TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTC
T ss_pred HHhhhhcC-------CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhC
Confidence 64321100 0011246788888888775 89999999999988753100 00000111 1236778888875
Q ss_pred CC--hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC-------------CCchhHHHHHHHHHHHhcCCc
Q 002999 513 PE--VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN-------------QSANCERSDAACILANIQLSE 577 (859)
Q Consensus 513 ~~--~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~-------------~~~~~~~~~A~~~L~~L~~~~ 577 (859)
.+ +.+|..++.++..+....+......+. ..++.++..+... +...+++..++.+|+++...-
T Consensus 510 ~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~ 587 (861)
T 2bpt_A 510 IDNEFNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587 (861)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcchHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 689999999999998554443322222 3566677666532 111245667888888776421
Q ss_pred HH-HHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChH
Q 002999 578 EE-VKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKA 656 (859)
Q Consensus 578 ~~-~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 656 (859)
.. ..... ...++.++..+..... . .+.+.+..++..++.....+....+ ..++|.|.+.|.++ ++
T Consensus 588 ~~~~~~~~-~~l~~~l~~~l~~~~~---------~-~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~-~~ 653 (861)
T 2bpt_A 588 PSSVEPVA-DMLMGLFFRLLEKKDS---------A-FIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQV-DS 653 (861)
T ss_dssp GGGTGGGH-HHHHHHHHHHHHSTTG---------G-GTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCT-TS
T ss_pred hhhhHHHH-HHHHHHHHHHHccCCC---------C-cHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccc-cH
Confidence 11 11001 1234445555544110 0 2455555555555543222333222 23789999999875 88
Q ss_pred HHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhc
Q 002999 657 RVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLA 736 (859)
Q Consensus 657 ~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~ 736 (859)
.++..|..+++.++...... +.-.-...++.|++.|.
T Consensus 654 ~vr~~a~~~l~~l~~~~~~~-------------------------------------------~~~~~~~l~~~l~~~l~ 690 (861)
T 2bpt_A 654 PVSITAVGFIADISNSLEED-------------------------------------------FRRYSDAMMNVLAQMIS 690 (861)
T ss_dssp HHHHHHHHHHHHHHHHTGGG-------------------------------------------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchh-------------------------------------------ccchHHHHHHHHHHHhC
Confidence 99999999999887643210 00011345778888888
Q ss_pred cCC--hhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcC---c-------hhHHHHHHHHHHHHHhc-
Q 002999 737 EED--TNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVR---P-------GLLQERTVWMLERVLRV- 803 (859)
Q Consensus 737 ~~~--~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~---~-------~~~~~~A~~~l~~~~~~- 803 (859)
+++ .+++..++.+|+.++...+.++. ..+ ...++++++.+.... + ..+++.+..++..++..
T Consensus 691 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~---~~l--~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l 765 (861)
T 2bpt_A 691 NPNARRELKPAVLSVFGDIASNIGADFI---PYL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGL 765 (861)
T ss_dssp CTTCCTTHHHHHHHHHHHHHHHHGGGGH---HHH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccHhhhHHHHHHHHHHHHHhhhhHH---HHH--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 89999999999999865121121 111 134677777775211 1 34778888888888742
Q ss_pred ccccccccc-chhhHHHHHHHhhcC----ChhhHHHHHHHHHHHhhh
Q 002999 804 EGHSHRYSL-NQSLVRALVEAFKHG----NANAKRHAQEALTNLKQI 845 (859)
Q Consensus 804 ~~~~~~~~~-~~~~~~~Lv~ll~~~----~~~~~~~A~~~L~~L~~~ 845 (859)
.+....+.. -..+...|...+.+. +..+|..|..+|..|...
T Consensus 766 ~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 766 HDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp TTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 111011111 122234455555653 889999999999999874
No 53
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.65 E-value=1.1e-16 Score=133.58 Aligned_cols=72 Identities=35% Similarity=0.702 Sum_probs=66.7
Q ss_pred CCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhcc
Q 002999 73 PFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 73 ~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
.+++|.||||+++|.|||+++|||+||+.||.+|+.. + +.+||+|++++...++.||..|++.|+.|.+++.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~----~-~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA----G-HKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT----T-CCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH----C-cCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence 4467999999999999999999999999999999975 3 6799999999998999999999999999999875
No 54
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.65 E-value=2.8e-13 Score=166.76 Aligned_cols=614 Identities=11% Similarity=0.072 Sum_probs=380.9
Q ss_pred cchhhhHhHHHHHHHh----cccccHHHHHhhhhcCCCccchHHHHHHHHHHHHhc-----------------CCcchhH
Q 002999 132 KPNIGLAGAIEEWVNR----NVEVQVSTVVETLRKENPEVDGLDKALDIVFKISEE-----------------HPSNRYR 190 (859)
Q Consensus 132 ~pn~~l~~~I~~w~~~----~~~~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~-----------------~~~~r~~ 190 (859)
.||...|+..++|..+ +...-...+.+.+...+.+...-.-|+..|++.... +++.+.
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~- 94 (861)
T 2bpt_A 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKN- 94 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHH-
T ss_pred CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHH-
Confidence 4566666665555433 112223445555654332222222356666665321 111222
Q ss_pred HHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCc--c-hHHHHHhhCchHHHHHHhcCC-CHHHHHHHHHHHHH
Q 002999 191 VRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDE--E-SKKIMLEEGVTKSVIHSLIGN-SEKEKEYAVKLLLE 266 (859)
Q Consensus 191 i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~--~-~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~ 266 (859)
..-+.|+..|.+.+. .+|..+..+|..++..+ . .+ ...++.|+..+.++ ++..+..++.+|..
T Consensus 95 ----~ik~~ll~~l~~~~~----~vr~~~~~~l~~i~~~~~p~~~w-----~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 95 ----QIKTNALTALVSIEP----RIANAAAQLIAAIADIELPHGAW-----PELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp ----HHHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHHGGGTCC-----HHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHCCCch----HHHHHHHHHHHHHHHhhCccccc-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 223567788877766 88999999999887652 1 11 23678889999888 88999999999999
Q ss_pred hccC--hhhh--hHhhhhhChHHHHHHhhcCCC--ChHHHHHHHHHHHHhcCC-CcCh-HHHHhcCChHHHHHHhccCCh
Q 002999 267 FCID--EAYC--KSVASEKGALVLLSSMTGNLE--LPALSNLADEVFKKMERI-EEIV-QPLAAAGRFEPLINRLCQGSD 338 (859)
Q Consensus 267 Ls~~--~~~~--~~i~~~~g~i~~Lv~lL~~~~--~~~~~~~a~~aL~nL~~~-~~~~-~~i~~~G~i~~Lv~lL~~~~~ 338 (859)
++.. ++.+ ... ....++.++..+. +. ++.++..|+.+|.++... +.+- ........++.|...+.+++.
T Consensus 162 l~~~~~~~~~~~~~~--~~~ll~~l~~~l~-~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 238 (861)
T 2bpt_A 162 MCESADPQSQALVSS--SNNILIAIVQGAQ-STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI 238 (861)
T ss_dssp HHHTSSTTSSTTGGG--HHHHHHHHHHHHS-TTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHcCChhhhHHHHH--HHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCH
Confidence 8864 2210 111 2346777888887 44 789999999999987532 1110 001112256667777788899
Q ss_pred HHHHHHHHHHHHhcCCCcc--HHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcc------------------h
Q 002999 339 NVQIEMAFLVGKLTLTNSC--KEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDN------------------A 396 (859)
Q Consensus 339 ~~~~~aa~~L~~la~~~~~--~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~------------------~ 396 (859)
+++..++.+|..++..... ...+....++.+...+. ++.++..|+.++..++..... .
T Consensus 239 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (861)
T 2bpt_A 239 EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFA 318 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHH
Confidence 9999999999988754322 22222233455666666 788999999999888764210 0
Q ss_pred HHHHHcCcHHHHHHHHhccC----CCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHH
Q 002999 397 TILVDSALLPALTDILFKSH----DASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQC 472 (859)
Q Consensus 397 ~~i~~~G~i~~Lv~lL~~~~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~ 472 (859)
.... ..++|.|+..|.... +....++..+..+|..++...+. .+ -...++.+...+.+.+...
T Consensus 319 ~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-----------~~-~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 319 LSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-----------HI-LEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-----------GG-HHHHHHHHHHHTTCSSHHH
T ss_pred HHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-----------hH-HHHHHHHHHHHcCCCChhH
Confidence 1111 356778888776421 12357888999999988874321 11 1346677777788888899
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHH-HHhcCCCCchHHHHH
Q 002999 473 QVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDL-AYALKPFDKLVLFKD 551 (859)
Q Consensus 473 ~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~-~~~l~~~g~i~~Lv~ 551 (859)
++.++++|..++..... ..+...+. ..++.|+..+.++++.+|..++++|..++....... ..... ...++.|+.
T Consensus 386 r~~a~~~l~~i~~~~~~-~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~ 461 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDK-VQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHTSSSSCH-HHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHH
Confidence 99999999999976421 12222222 357888999999999999999999999974322110 00011 146788888
Q ss_pred hhccCCCchhHHHHHHHHHHHhcCCc-----HHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcc
Q 002999 552 KILDNQSANCERSDAACILANIQLSE-----EEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFT 626 (859)
Q Consensus 552 lL~~~~~~~~~~~~A~~~L~~L~~~~-----~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~ 626 (859)
.+.+. ..++..|+++|.++...- ..+...+ ...++.|+..+.+.. . ...+...++.++..+.
T Consensus 462 ~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d--------~-~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 462 GLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRID--------N-EFNARASAFSALTTMV 528 (861)
T ss_dssp HHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSC--------C-GGGHHHHHHHHHHHHH
T ss_pred HhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcC--------c-chHHHHHHHHHHHHHH
Confidence 88664 389999999999886521 0110000 123444445544211 0 1124555666666655
Q ss_pred cCCChhhHHHHHhcCchHHHHHhhcCC--------------ChHHHHHHHHHHhhhhhhhcccccccCCCCCCCcccccc
Q 002999 627 RSVNPQTLGMVREQRLMTIFRDQLSFP--------------SKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCAS 692 (859)
Q Consensus 627 ~~~~~~~~~~i~~~~~i~~Lv~lL~~~--------------~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 692 (859)
.....+....+. .++|.+++.|... ....++..+..+|.++.........
T Consensus 529 ~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-------------- 592 (861)
T 2bpt_A 529 EYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE-------------- 592 (861)
T ss_dssp HHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG--------------
T ss_pred HHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH--------------
Confidence 443333333332 3677777776520 1346778888999888765321000
Q ss_pred ccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCCh-hHHHHHHHHHHhhhhccCcchhhHHHHHHhc
Q 002999 693 LVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDT-NVEIAAVEALSTLIIDTSKNFKRGVDELERE 771 (859)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~-~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~ 771 (859)
-.-...++.++.++.+.+. .+++.++.+++.++...+.++ ...+.
T Consensus 593 -----------------------------~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~---~~~l~-- 638 (861)
T 2bpt_A 593 -----------------------------PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF---EKYLE-- 638 (861)
T ss_dssp -----------------------------GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG---HHHHH--
T ss_pred -----------------------------HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhH---HHHHH--
Confidence 0012457778888888777 899999999999985411111 11122
Q ss_pred CChHHHHHHhhhcCchhHHHHHHHHHHHHHhcc-ccccccccchhhHHHHHHHhhcCC--hhhHHHHHHHHHHHhhh
Q 002999 772 GALDAVVDLFTEVRPGLLQERTVWMLERVLRVE-GHSHRYSLNQSLVRALVEAFKHGN--ANAKRHAQEALTNLKQI 845 (859)
Q Consensus 772 g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~Lv~ll~~~~--~~~~~~A~~~L~~L~~~ 845 (859)
.-++.|++.+. +++..++..|++++..+++.- +....| ...+...|++.+++.+ +.+|..+..+|..+...
T Consensus 639 ~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 639 TFSPYLLKALN-QVDSPVSITAVGFIADISNSLEEDFRRY--SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHHH-CTTSHHHHHHHHHHHHHHHHTGGGGHHH--HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhchhccch--HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 25677888886 588889999999999998632 111111 1334567788888875 88999999999988774
No 55
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.61 E-value=1.2e-16 Score=124.45 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=50.6
Q ss_pred cccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhh
Q 002999 76 NFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIG 136 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~ 136 (859)
.|.||||+++|+|||++ +|||+|||.+|++|+.+ +.+||+|+++|+..+|+||..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~------~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD------TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH------HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh------CCCCcCCcCCCChhhcEECcc
Confidence 49999999999999999 99999999999999987 457999999999999999864
No 56
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.60 E-value=2.9e-13 Score=152.44 Aligned_cols=410 Identities=13% Similarity=0.107 Sum_probs=270.6
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcc-----------------h-hHHHhcCcHHHHHHHHhcCCCCcch
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSN-----------------R-YRVRNAGVVLLIVKLLKSSSKSVGT 213 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~-----------------r-~~i~~~g~i~~Lv~lL~~~~~~~~~ 213 (859)
+++.++..|+....|.+.++.+|..|..+...++.. . ..+.+.+.|+.|+.+|++.+.
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df---- 136 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF---- 136 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH----
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH----
Confidence 477788888876667777777788887765533221 1 123456889999999999888
Q ss_pred HHHHHHHHHHHhcccC--cchHHHHHh-hCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHh
Q 002999 214 ILRSKALMALLSMAKD--EESKKIMLE-EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSM 290 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~--~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l 290 (859)
.+|..++..|..|+.+ +.+++.|.. .++++.|+.+|++....+|..|+.+|.+|+.++...+++..-.|+++.|+.+
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~I 216 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI 216 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHH
Confidence 9999999999999987 448898885 5999999999999989999999999999999988888888778999999999
Q ss_pred hcC---CCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChH------HHHH---HHHHHHHhcCCC--
Q 002999 291 TGN---LELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDN------VQIE---MAFLVGKLTLTN-- 355 (859)
Q Consensus 291 L~~---~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~------~~~~---aa~~L~~la~~~-- 355 (859)
+.. .+.-.+.+.++.+|.||... ..|+..+.|.|+++.|..+|..+.+. ...+ +..++.-+....
T Consensus 217 i~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~ 296 (651)
T 3grl_A 217 ITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296 (651)
T ss_dssp HHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSC
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 981 12336789999999999975 56899999999999999999754322 2333 333444444432
Q ss_pred -----ccHHHHHHhh-HHHHHHHhC----ChhHHHHHHHHHHHhhCCC-cchHHHHHcC-----cHHHHHHHHhc--cCC
Q 002999 356 -----SCKEHIARQC-AKVLVELLS----KPAGRAASLKALYNLSGLD-DNATILVDSA-----LLPALTDILFK--SHD 417 (859)
Q Consensus 356 -----~~~~~i~~~g-i~~Lv~lL~----~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G-----~i~~Lv~lL~~--~~~ 417 (859)
.|+..+.+.| ++.|++++. ...++..|+.++..+..++ .++..+.+.. ..|.++.+|.+ .+.
T Consensus 297 ~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~ 376 (651)
T 3grl_A 297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNER 376 (651)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTT
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccc
Confidence 3466776655 599999887 5678899999999999988 6788777643 23444444322 123
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccccccc--------ccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChh
Q 002999 418 ASPELKELAAATIANVVSNPGCWELASA--------DKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQA 489 (859)
Q Consensus 418 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~--------~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~ 489 (859)
....+|..|+.++.....++..-+.... +.... -.+.| ..|..-+-+.+|--.--++.+|.++-.++..
T Consensus 377 ~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~-~~s~g--~ll~~~l~s~d~~~~wfAavil~hll~~n~~ 453 (651)
T 3grl_A 377 QPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGN-TVSAG--QLLCGGLFSTDSLSNWCAAVALAHALQENAT 453 (651)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTS-SSCHH--HHHHHHHTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCC-CCCcc--hhhhhhhccCchHHHHHHHHHHHHHHcCCHH
Confidence 5678999999999988877653211100 00000 11122 1234444455653323366667777666533
Q ss_pred HHHHHHHHhh-----------CCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCC
Q 002999 490 AESVATHIKS-----------GDGIKYIIQFLEHP-EVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQ 557 (859)
Q Consensus 490 ~~~~~~~i~~-----------~g~i~~Lv~lL~~~-~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 557 (859)
.+ +.+.+ .-.++.+..+|..+ +++++..-+.+|..--...++.+.+.+.+...++.|+..+.++.
T Consensus 454 ~K---~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~ 530 (651)
T 3grl_A 454 QK---EQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENL 530 (651)
T ss_dssp HH---HHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCC
T ss_pred HH---HHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhcc
Confidence 22 22111 12244555555443 34555544555544433344445555666567999998875432
Q ss_pred C--chhHHHHHHHHHH
Q 002999 558 S--ANCERSDAACILA 571 (859)
Q Consensus 558 ~--~~~~~~~A~~~L~ 571 (859)
. ..-++--++.+|+
T Consensus 531 ~~~~~lvqGL~a~LLG 546 (651)
T 3grl_A 531 GEEEQLVQGLCALLLG 546 (651)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH
Confidence 2 0124444555554
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.60 E-value=2.8e-12 Score=158.19 Aligned_cols=624 Identities=11% Similarity=0.059 Sum_probs=371.5
Q ss_pred cchhhhHhHHHHHH----HhcccccHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcch------hHH--H---hcCc
Q 002999 132 KPNIGLAGAIEEWV----NRNVEVQVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNR------YRV--R---NAGV 196 (859)
Q Consensus 132 ~pn~~l~~~I~~w~----~~~~~~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r------~~i--~---~~g~ 196 (859)
.|+...|+.-+.+. ..+...-...+...|...+.+......|...|++........+ .+. . ....
T Consensus 12 s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~i 91 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREV 91 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHH
Confidence 45666665554443 3322222445566666543332222236666776543221111 010 0 0112
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCC--CHHHHHHHHHHHHHhccC--hh
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGN--SEKEKEYAVKLLLEFCID--EA 272 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~--~~ 272 (859)
-+.|+..|.+.+. .+ ..++.++..++..+.... .-...++.|+..+.++ +...+..++.+|..+... ++
T Consensus 92 k~~ll~~l~~~~~----~~-~~~~~~l~~i~~~~~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 164 (876)
T 1qgr_A 92 KNYVLHTLGTETY----RP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE 164 (876)
T ss_dssp HHHHHHHTTTCCS----SS-CHHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHhCCCcH----HH-HHHHHHHHHHHHhhCccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh
Confidence 2347777877665 66 778888888765421100 0145788999999988 889999999999998753 22
Q ss_pred hhhHhhhhhChHHHHHHhhcCCC-ChHHHHHHHHHHHHhcCC-CcCh-HHHHhcCChHHHHHHhccCChHHHHHHHHHHH
Q 002999 273 YCKSVASEKGALVLLSSMTGNLE-LPALSNLADEVFKKMERI-EEIV-QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVG 349 (859)
Q Consensus 273 ~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~aL~nL~~~-~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~ 349 (859)
.-... ....++.+...+.+.+ +..++..|+.+|.++... +.+. ........++.+...+.+.+++++..+..+|.
T Consensus 165 ~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~ 242 (876)
T 1qgr_A 165 QLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (876)
T ss_dssp HHGGG--HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hHHhH--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 21111 2457788888888322 688999999999998743 1111 11111225677777778888999999999999
Q ss_pred HhcCCCcc--HHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc-------------------chHHH--HHcCc
Q 002999 350 KLTLTNSC--KEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDD-------------------NATIL--VDSAL 404 (859)
Q Consensus 350 ~la~~~~~--~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~-------------------~~~~i--~~~G~ 404 (859)
.++..... ...+....++.++..+. ++.++..|+..+.+++.... ....+ .-...
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (876)
T 1qgr_A 243 KIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL 322 (876)
T ss_dssp HHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHH
Confidence 88764332 22222244577777666 77889999988888875310 00000 01235
Q ss_pred HHHHHHHHhccC----CCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHH
Q 002999 405 LPALTDILFKSH----DASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRIL 480 (859)
Q Consensus 405 i~~Lv~lL~~~~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL 480 (859)
++.++..|.... +.+..++..|..+|..++...+. .+ -..+++.+...+.+.++.++..++++|
T Consensus 323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-----------~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l 390 (876)
T 1qgr_A 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-----------DI-VPHVLPFIKEHIKNPDWRYRDAAVMAF 390 (876)
T ss_dssp HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-----------GG-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-----------hh-HHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 677777775321 23467889999999988764321 11 235667777788888899999999999
Q ss_pred HHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHH-HHhcCCCCchHHHHHhhccCCCc
Q 002999 481 CGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDL-AYALKPFDKLVLFKDKILDNQSA 559 (859)
Q Consensus 481 ~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~ 559 (859)
..++..... ..+...+ ...++.|+..++++++.+|..|+++|..++....... ..... ...++.|+..+.++ .
T Consensus 391 ~~i~~~~~~-~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~- 464 (876)
T 1qgr_A 391 GCILEGPEP-SQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-P- 464 (876)
T ss_dssp HHTSSSSCH-HHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-H-
T ss_pred HHHHcCCCH-HHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-H-
Confidence 999976431 1122222 2367889999999999999999999999984432211 00011 15678888888764 3
Q ss_pred hhHHHHHHHHHHHhcCCcHH---------------HHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhh
Q 002999 560 NCERSDAACILANIQLSEEE---------------VKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLH 624 (859)
Q Consensus 560 ~~~~~~A~~~L~~L~~~~~~---------------~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~ 624 (859)
.++..|+++|+++...-.. +...+ ...++.|+..+..... ....+...+..++..
T Consensus 465 -~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~--------~~~~~r~~~~~~l~~ 534 (876)
T 1qgr_A 465 -RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDG--------HQNNLRSSAYESLME 534 (876)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSS--------CSTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH-HHHHHHHHHHHhCcCc--------chhhHHHHHHHHHHH
Confidence 7899999999998752110 00000 1234444444433110 011223334444444
Q ss_pred cccCCChhhHHHHHhcCchHHHHHhhcC----------CCh----HHHHHHHHHHhhhhhhhcc-cccccCCCCCCCccc
Q 002999 625 FTRSVNPQTLGMVREQRLMTIFRDQLSF----------PSK----ARVKQLAAHGLKNLSEAGR-SLCAEDTGSPTPRRF 689 (859)
Q Consensus 625 ~~~~~~~~~~~~i~~~~~i~~Lv~lL~~----------~~~----~~vk~~Aa~aL~~ls~~~~-~~~~~~~~~~~~~~~ 689 (859)
+......+....+ ..++|.+++.+.. ..+ +.++..+..++..+..... ..
T Consensus 535 l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~------------- 599 (876)
T 1qgr_A 535 IVKNSAKDCYPAV--QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD------------- 599 (876)
T ss_dssp HHHTCCSTTHHHH--HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH-------------
T ss_pred HHHHCchhhHHHH--HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh-------------
Confidence 4332122222221 2456666665542 113 4567788888887765321 00
Q ss_pred cccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCC--hhHHHHHHHHHHhhhhccCcchhhHHHH
Q 002999 690 CASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEED--TNVEIAAVEALSTLIIDTSKNFKRGVDE 767 (859)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~~L~~d~~~~~~~~~~~ 767 (859)
+.-.-...++.|+++|++.. ..+++.++.+|.+++...+..+...
T Consensus 600 ------------------------------~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~--- 646 (876)
T 1qgr_A 600 ------------------------------ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY--- 646 (876)
T ss_dssp ------------------------------HHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGG---
T ss_pred ------------------------------hhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHH---
Confidence 00001345788888888765 4789999999999986412112111
Q ss_pred HHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcc-ccccccccchhhHHHHHHHhhc--CChhhHHHHHHHHHHHhh
Q 002999 768 LEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVE-GHSHRYSLNQSLVRALVEAFKH--GNANAKRHAQEALTNLKQ 844 (859)
Q Consensus 768 i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~Lv~ll~~--~~~~~~~~A~~~L~~L~~ 844 (859)
+. ..++.+...+....+..++..|.+++..+.+.- +....+ ...+...|++.+.+ .+..+|..+..++..+..
T Consensus 647 ~~--~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 647 ME--AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF--CDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HH--HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH--HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 11 256778888875237889999999999998632 211111 23455788889987 457899999999999876
No 58
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.60 E-value=1.8e-12 Score=152.07 Aligned_cols=507 Identities=14% Similarity=0.120 Sum_probs=332.2
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhc-ccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC-hh
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSM-AKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID-EA 272 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L-~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~ 272 (859)
|-+..+-+.|++++. ..+..++.-|..+ ..+.+. ..+.+.+++++.+.+...+..+.-++..++.. ++
T Consensus 13 ~e~~~i~~~L~~~~~----~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e 82 (591)
T 2vgl_B 13 GEIFELKAELNNEKK----EKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPD 82 (591)
T ss_dssp SHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH
T ss_pred ChHHHHHHHHcCCCH----HHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCch
Confidence 445667777877765 6666665544332 222211 24577888999999999998888888887663 33
Q ss_pred hhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 002999 273 YCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLT 352 (859)
Q Consensus 273 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la 352 (859)
.. .-++..|.+-|. ++|+.++..|+.+|.++. .++... ..++++..+|.+.++.++..|+.+|.++.
T Consensus 83 ~~------~l~~n~l~kdL~-~~n~~ir~~AL~~L~~i~-~~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~ 149 (591)
T 2vgl_B 83 MA------IMAVNSFVKDCE-DPNPLIRALAVRTMGCIR-VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLH 149 (591)
T ss_dssp HH------HTTHHHHGGGSS-SSSHHHHHHHHHHHHTCC-SGGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHcC-CCCHHHHHHHHHHHHcCC-hHHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 21 124667777788 789999999999998886 222222 24678999999999999999999999998
Q ss_pred CCCccHHHHHH-hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcch-HHHHHcCcHHHHHHHHhccCCCCHHHHHHHHH
Q 002999 353 LTNSCKEHIAR-QCAKVLVELLS--KPAGRAASLKALYNLSGLDDNA-TILVDSALLPALTDILFKSHDASPELKELAAA 428 (859)
Q Consensus 353 ~~~~~~~~i~~-~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~ 428 (859)
..+.. .+.. +.++.|..+|. ++.++..|+.+|..++...... ..-...+.++.|+..+.. .++-.+...+.
T Consensus 150 ~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~---~~~~~q~~il~ 224 (591)
T 2vgl_B 150 DINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE---CTEWGQIFILD 224 (591)
T ss_dssp HSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH---CCHHHHHHHHH
T ss_pred hhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC---CCchHHHHHHH
Confidence 64433 2222 34689999998 8899999999999998765321 001112346677777754 44567777888
Q ss_pred HHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhcc----CChhHHHHHHHHhhCCCHH
Q 002999 429 TIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIAS----SPQAAESVATHIKSGDGIK 504 (859)
Q Consensus 429 ~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~----~~~~~~~~~~~i~~~g~i~ 504 (859)
+|..++..++. .....++.+..++++.++.++..|++++..+.. ++.....+ + ....+
T Consensus 225 ~l~~l~~~~~~-------------~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~---~--~~~~~ 286 (591)
T 2vgl_B 225 CLSNYNPKDDR-------------EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML---L--KKLAP 286 (591)
T ss_dssp HHHTSCCCSHH-------------HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH---H--HHTHH
T ss_pred HHHHhCCCChH-------------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH---H--HHHHH
Confidence 88766533211 124578888889999999999999999999974 22221111 1 13457
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHH
Q 002999 505 YIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLL 584 (859)
Q Consensus 505 ~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~ 584 (859)
.|+.++ ++++++|..|+.+|..+....++. .. ..+..+..+ .+++ ..++..|+.+|.+++..+. ...
T Consensus 287 ~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~-----~~-~~~~~~~~~--~~d~-~~Ir~~al~~L~~l~~~~n-v~~-- 353 (591)
T 2vgl_B 287 PLVTLL-SGEPEVQYVALRNINLIVQKRPEI-----LK-QEIKVFFVK--YNDP-IYVKLEKLDIMIRLASQAN-IAQ-- 353 (591)
T ss_dssp HHHHHT-TSCHHHHHHHHHHHHHHHHHCCST-----TT-TCTTTTSCC--TTSC-HHHHHHHHHHHHHTCCSST-HHH--
T ss_pred HHHHHh-cCCccHHHHHHHHHHHHHHhChHH-----HH-HHHHhheec--cCCh-HHHHHHHHHHHHHHCChhh-HHH--
Confidence 777766 478899999999999997433221 11 122222211 1233 4899999999999986432 111
Q ss_pred HhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 002999 585 EATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAH 664 (859)
Q Consensus 585 ~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~ 664 (859)
.++.|...+.+ ....+...++.++..++... +.. ....++.|+++|... ...++..+..
T Consensus 354 ---iv~~L~~~l~~-----------~d~~~r~~~v~aI~~la~~~-~~~-----~~~~v~~Ll~ll~~~-~~~v~~e~i~ 412 (591)
T 2vgl_B 354 ---VLAELKEYATE-----------VDVDFVRKAVRAIGRCAIKV-EQS-----AERCVSTLLDLIQTK-VNYVVQEAIV 412 (591)
T ss_dssp ---HHHHHHHHTTS-----------SCHHHHHHHHHHHHHHHTTC-HHH-----HHHHHHHHHHHHHTC-CHHHHHHHHH
T ss_pred ---HHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHhC-hhH-----HHHHHHHHHHHHccc-chHHHHHHHH
Confidence 22333333332 12245667777777776532 221 134689999999996 7788888888
Q ss_pred HhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhc-cCChhHH
Q 002999 665 GLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLA-EEDTNVE 743 (859)
Q Consensus 665 aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~ 743 (859)
++.++....+.. ...++..|++.|+ ..+++++
T Consensus 413 ~l~~ii~~~p~~-----------------------------------------------~~~~v~~L~~~l~~~~~~~~~ 445 (591)
T 2vgl_B 413 VIRDIFRKYPNK-----------------------------------------------YESIIATLCENLDSLDEPDAR 445 (591)
T ss_dssp HHHHHHHHSCSS-----------------------------------------------CCTTHHHHHHTTTTCCSHHHH
T ss_pred HHHHHHHHCcch-----------------------------------------------HHHHHHHHHHHHHhccCHHHH
Confidence 998886543211 1346888999987 4678899
Q ss_pred HHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHH
Q 002999 744 IAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEA 823 (859)
Q Consensus 744 ~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~l 823 (859)
..+++.|+.+... -.++. ..++.+++-+. ..++.+|..++.++.+++..... .....+..+...
T Consensus 446 ~~~~wilGey~~~-~~~~~---------~~l~~l~~~~~-~~~~~vr~~~l~a~~Kl~~~~p~-----~~~~~i~~ll~~ 509 (591)
T 2vgl_B 446 AAMIWIVGEYAER-IDNAD---------ELLESFLEGFH-DESTQVQLTLLTAIVKLFLKKPS-----ETQELVQQVLSL 509 (591)
T ss_dssp HHHHHHHHTTCTT-CTTHH---------HHHHHHSTTCS-SSCHHHHHHHHHHHHHHHTTCCS-----TTHHHHHHHHHH
T ss_pred HHHHHHHHccccc-ccCHH---------HHHHHHHHhhc-cCCHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHH
Confidence 9999999998854 11111 12333443343 25788999999999999853210 011233456665
Q ss_pred h-h-cCChhhHHHHHHHHHHHhh
Q 002999 824 F-K-HGNANAKRHAQEALTNLKQ 844 (859)
Q Consensus 824 l-~-~~~~~~~~~A~~~L~~L~~ 844 (859)
. . +.|+.+|..|..+++-|..
T Consensus 510 ~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 510 ATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp HHTTCCCHHHHHHHHHHHTTTTT
T ss_pred hhhcCCChHHHHHHHHHHHHHCc
Confidence 4 3 4678999999999888765
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=2.9e-16 Score=166.47 Aligned_cols=73 Identities=26% Similarity=0.375 Sum_probs=66.6
Q ss_pred CCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhcc
Q 002999 72 LPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 72 ~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
+.|++|+||||+++|+|||+++|||||||.||++||.. + ..+||+|+++++..+++||..|++.|++|+.+++
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~----~-~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR----V-GHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHH----T-CSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHH----C-CCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence 44467999999999999999999999999999999987 3 3459999999998999999999999999999875
No 60
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.57 E-value=1.2e-12 Score=167.33 Aligned_cols=604 Identities=14% Similarity=0.094 Sum_probs=367.3
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE 231 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~ 231 (859)
.+..+++.+.+ ++.+....|...|.+........-..-.....++.|++.|.+.+. .+|..|+.+|..++..-.
T Consensus 7 ~l~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~----~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 7 HISNLLEKMTS--SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG----EVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp HHHHHHHHTTC--SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH----HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC--CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHhCC
Confidence 35666767665 344444458888887654321110001112456788888886666 999999999999987511
Q ss_pred hHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhh-------hhHhhhhhChHHHHHHhhcCCCChHHHHHHH
Q 002999 232 SKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY-------CKSVASEKGALVLLSSMTGNLELPALSNLAD 304 (859)
Q Consensus 232 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 304 (859)
. ..+ ...++.|+..|.+++..+|..|+.+|..++..-.. .... ....+|.|+..+..++++.++..|+
T Consensus 81 ~-~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~~~~~al 155 (1230)
T 1u6g_C 81 E-YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEAL 155 (1230)
T ss_dssp H-HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred H-HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH--HHHHHHHHHHHHcCCCchHHHHHHH
Confidence 1 111 23577888888888888899999999888753211 1111 2458899999987447789999999
Q ss_pred HHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHH
Q 002999 305 EVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRA 380 (859)
Q Consensus 305 ~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~ 380 (859)
.+|..++.. .+.... .-...++.|+..|.+.+..++..++.+|+.++....... ....++.|+..|. +...+.
T Consensus 156 ~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~--~~~~l~~l~~~L~~~~~~~~r~ 232 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV--FVDLIEHLLSELSKNDSMSTTR 232 (1230)
T ss_dssp HHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHTCSSCSCT
T ss_pred HHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHhccCCchhHHH
Confidence 999999842 111110 012356677777888889999999999999987543321 2334677877776 345677
Q ss_pred HHHHHHHHhhCCCcchHHHH--HcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchH
Q 002999 381 ASLKALYNLSGLDDNATILV--DSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIV 458 (859)
Q Consensus 381 ~a~~aL~~Ls~~~~~~~~i~--~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i 458 (859)
.++.+|..++..... .+. -...+|.++..+.. .+..+++.++.++..++...+.... -.-...+
T Consensus 233 ~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d---~~~~vR~~a~~~l~~l~~~~~~~~~---------~~l~~li 298 (1230)
T 1u6g_C 233 TYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVY---------PHVSTII 298 (1230)
T ss_dssp THHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS---CCTTTHHHHHHHHHHHHHCTTCCCH---------HHHHHHH
T ss_pred HHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHChHHHH---------HhHHHHH
Confidence 788888888764322 111 13678888888853 4567899999999988875432110 0012233
Q ss_pred HHHHHhhcC-------------------------------------CChHHHHHHHHHHHHhccCChhHHHHHHHHhhCC
Q 002999 459 SSLLGLLSG-------------------------------------VSPQCQVSTLRILCGIASSPQAAESVATHIKSGD 501 (859)
Q Consensus 459 ~~Ll~LL~~-------------------------------------~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g 501 (859)
+.++..+.. ...+++..++.+|..++..... .+...+ ..
T Consensus 299 ~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~--~~~~~~--~~ 374 (1230)
T 1u6g_C 299 NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE--MLPEFY--KT 374 (1230)
T ss_dssp HHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCT--THHHHH--TT
T ss_pred HHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchh--HHHHHH--HH
Confidence 333333321 1124677888888888764221 011112 24
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc------------------HHHHHhcCCCCchHHHHHhhccCCCchhHH
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIG------------------QDLAYALKPFDKLVLFKDKILDNQSANCER 563 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~------------------~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~ 563 (859)
.++.|+..+.+.++.+|..+..++..+....+ ......+.. ..++.+.+.+.+.+. .++
T Consensus 375 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~l~~~l~~~~~--~vr 451 (1230)
T 1u6g_C 375 VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP-NIVKALHKQMKEKSV--KTR 451 (1230)
T ss_dssp THHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTT-HHHHHHHHHTTCSCH--HHH
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhh-HHHHHHHHHhccCCH--HHH
Confidence 56788888888889999999988877763211 011122222 356666777887765 788
Q ss_pred HHHHHHHHHhcCCcHH-HHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChh-hHHHHHhcC
Q 002999 564 SDAACILANIQLSEEE-VKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQ-TLGMVREQR 641 (859)
Q Consensus 564 ~~A~~~L~~L~~~~~~-~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~-~~~~i~~~~ 641 (859)
..++.+|+.+...... +... -...++.++..|.+.. ....+...+++.+..+.....++ ....+ ..
T Consensus 452 ~~~~~~L~~l~~~~~~~l~~~-l~~ll~~l~~~L~d~~---------~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~ 519 (1230)
T 1u6g_C 452 QCCFNMLTELVNVLPGALTQH-IPVLVPGIIFSLNDKS---------SSSNLKIDALSCLYVILCNHSPQVFHPHV--QA 519 (1230)
T ss_dssp HHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHTTCSS---------SCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TT
T ss_pred HHHHHHHHHHHHHchhhhHHH-HHHHHHHHHHHHcCCC---------CcchHHHHHHHHHHHHHHhCCHHHHHhHH--HH
Confidence 8888888887653211 0000 0123444445544311 11245666777777665432333 22222 36
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcch
Q 002999 642 LMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLC 721 (859)
Q Consensus 642 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (859)
++|.|+..+.+. +..++..|..+++.+...-..... .+. ..+.
T Consensus 520 llp~L~~~l~d~-~~~v~~~al~~l~~l~~~~~~~~~--~~~----------------------------------~~~~ 562 (1230)
T 1u6g_C 520 LVPPVVACVGDP-FYKITSEALLVTQQLVKVIRPLDQ--PSS----------------------------------FDAT 562 (1230)
T ss_dssp THHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCCSSS--CCC----------------------------------CCCH
T ss_pred HHHHHHHHHccc-chHHHHHHHHHHHHHHHHhcCccc--ccc----------------------------------cchH
Confidence 899999999986 889988888888888754221000 000 0000
Q ss_pred hhhcCCchHHHhhh--ccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHH
Q 002999 722 LLKSNCIKPLVDLL--AEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLER 799 (859)
Q Consensus 722 l~~~g~i~~Lv~lL--~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~ 799 (859)
-.-...++.|+..| .+.+.+++..|+.+|+.|+...+..+... + ...++.|.+.+. ++..+..++.++..
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~---~--~~~l~~L~~~l~---~e~~r~~~~~al~~ 634 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD---L--PNTLQIFLERLK---NEITRLTTVKALTL 634 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTH---H--HHHHHHHHHHTT---SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhh---H--HHHHHHHHHHhc---cchhHHHHHHHHHH
Confidence 01134577788888 67888999999999999997512111110 0 112333444443 45577788999988
Q ss_pred HHhccccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHhhhcC
Q 002999 800 VLRVEGHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLKQISG 847 (859)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~ 847 (859)
+....-..........++..|...+++.+..+|..|..+|..+.+...
T Consensus 635 i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 635 IAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 875321000001124456788889999999999999999999987643
No 61
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.5e-14 Score=142.19 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=66.6
Q ss_pred ccccCCCCCCcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCC--CCcccCCCCCcchhhhHhHHH
Q 002999 66 EEDCHILPFKNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPV--TGQVLKSLELKPNIGLAGAIE 142 (859)
Q Consensus 66 ~~~~~~~~~~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~--t~~~l~~~~l~pn~~l~~~I~ 142 (859)
+|........+|.||||+++|+|||+. .|||+|||.||++||.. ++..+||+ |++++...+++||..|++.|+
T Consensus 171 DDI~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~----~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve 246 (267)
T 3htk_C 171 DDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQG----YTTRDCPQAACSQVVSMRDFVRDPIMELRCK 246 (267)
T ss_dssp SCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTT----CSCEECSGGGCSCEECGGGEEECHHHHHHHH
T ss_pred ccceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHh----CCCCCCCcccccCcCchhhCCcCHHHHHHHH
Confidence 344333345779999999999999975 99999999999999986 22578999 889999999999999999999
Q ss_pred HHHHhc
Q 002999 143 EWVNRN 148 (859)
Q Consensus 143 ~w~~~~ 148 (859)
.|..+.
T Consensus 247 ~~k~r~ 252 (267)
T 3htk_C 247 IAKMKE 252 (267)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 62
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.44 E-value=2.8e-11 Score=127.79 Aligned_cols=256 Identities=11% Similarity=0.031 Sum_probs=195.4
Q ss_pred HhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcC
Q 002999 237 LEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEI 316 (859)
Q Consensus 237 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~ 316 (859)
...+.++.|+..|.++++.++..|+.+|.++. ..++++.|+.+|. ++++.++..|+.+|..+...+..
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCS-DKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC-----------CchHHHHHHHHHc-CCCHHHHHHHHHHHHHhcccccc
Confidence 44678999999999999999999999999885 2458899999999 88999999999999998754333
Q ss_pred hHHHHhcCChHHHH-HHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC
Q 002999 317 VQPLAAAGRFEPLI-NRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLD 393 (859)
Q Consensus 317 ~~~i~~~G~i~~Lv-~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~ 393 (859)
... .++.|. .++.+.++.++..++.+|+++...+.. .....++.|+.+|. ++.++..|+.+|.++..
T Consensus 88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~---~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPI---YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc---ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 221 223333 245678899999999999988642211 01234688888888 88999999999998753
Q ss_pred cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHH
Q 002999 394 DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQ 473 (859)
Q Consensus 394 ~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~ 473 (859)
.++++.|+.+|.+ ++..++..|+++|..+... ...+++.|+.++.+.++.++
T Consensus 158 --------~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~-----------------~~~~~~~L~~~l~d~~~~vR 209 (280)
T 1oyz_A 158 --------KATIPLLINLLKD---PNGDVRNWAAFAININKYD-----------------NSDIRDCFVEMLQDKNEEVR 209 (280)
T ss_dssp ---------CCHHHHHHHHTC---SSHHHHHHHHHHHHHHTCC-----------------CHHHHHHHHHHTTCSCHHHH
T ss_pred --------HHHHHHHHHHHcC---CCHHHHHHHHHHHHhhccC-----------------cHHHHHHHHHHhcCCCHHHH
Confidence 3589999999964 5678999999999887321 24578899999999999999
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhh
Q 002999 474 VSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKI 553 (859)
Q Consensus 474 ~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL 553 (859)
..++++|..+... ..++.|+.++++++ +|..|+++|..+. . ...++.|..++
T Consensus 210 ~~A~~aL~~~~~~--------------~~~~~L~~~l~d~~--vr~~a~~aL~~i~--~----------~~~~~~L~~~l 261 (280)
T 1oyz_A 210 IEAIIGLSYRKDK--------------RVLSVLCDELKKNT--VYDDIIEAAGELG--D----------KTLLPVLDTML 261 (280)
T ss_dssp HHHHHHHHHTTCG--------------GGHHHHHHHHTSSS--CCHHHHHHHHHHC--C----------GGGHHHHHHHH
T ss_pred HHHHHHHHHhCCH--------------hhHHHHHHHhcCcc--HHHHHHHHHHhcC--c----------hhhhHHHHHHH
Confidence 9999999998622 35788888887754 8888999998874 1 25789999999
Q ss_pred ccCCCchhHHHHHHHHHH
Q 002999 554 LDNQSANCERSDAACILA 571 (859)
Q Consensus 554 ~~~~~~~~~~~~A~~~L~ 571 (859)
.+.++ .++...+...|.
T Consensus 262 ~~~~~-~~~~~~~~~~l~ 278 (280)
T 1oyz_A 262 YKFDD-NEIITSAIDKLK 278 (280)
T ss_dssp TTSSC-CHHHHHHHHHHT
T ss_pred hcCCC-cHHHHHHHHHhh
Confidence 87665 355555555443
No 63
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.44 E-value=3e-10 Score=133.62 Aligned_cols=479 Identities=10% Similarity=0.025 Sum_probs=317.9
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHH
Q 002999 240 GVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQP 319 (859)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~ 319 (859)
.+....++++.+.+.+.+..+--.+..++..+..... -++..|.+-|. +.++.++..|+.+|.++... .
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~-~~n~~vr~lAL~~L~~i~~~-----~ 138 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLN-HSTQFVQGLALCTLGCMGSS-----E 138 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHS-CSSSHHHHHHHHHHHHHCCH-----H
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcC-CCCHhHHHHHHHHHHhcCCH-----H
Confidence 3567778888888888888887788888765432111 15677778888 88999999999999999732 2
Q ss_pred HHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcc-h
Q 002999 320 LAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDN-A 396 (859)
Q Consensus 320 i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~-~ 396 (859)
++ ...++.+..+|.+.++.++..|+.++.++...... +.+..++.+..+|. ++.++..|+.+|..++..+.. .
T Consensus 139 ~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 139 MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 33 24678889999999999999999999998763322 11234566777777 789999999999999865422 1
Q ss_pred HHHHHcCcHHHHHHHHhcc------------CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHh
Q 002999 397 TILVDSALLPALTDILFKS------------HDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGL 464 (859)
Q Consensus 397 ~~i~~~G~i~~Lv~lL~~~------------~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~L 464 (859)
..+ ...+|.|+.+|... ...++-.+...+.+|..++..++.. ....++.|..+
T Consensus 215 ~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-------------~~~~~~~L~~l 279 (618)
T 1w63_A 215 AHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-------------SEAMNDILAQV 279 (618)
T ss_dssp HHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-------------HHTTHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-------------HHHHHHHHHHH
Confidence 122 26788899888641 1235677888999999887654221 12234444454
Q ss_pred hc------CCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHH
Q 002999 465 LS------GVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAY 538 (859)
Q Consensus 465 L~------~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~ 538 (859)
+. +.+..+...|++++..+...+ .++. .++..|..++.++++.+|..|+.+|..+.... +.
T Consensus 280 ~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p~--- 346 (618)
T 1w63_A 280 ATNTETSKNVGNAILYETVLTIMDIKSES----GLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQTD-HN--- 346 (618)
T ss_dssp HHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-HH---
T ss_pred HhccccccchHHHHHHHHHHHHHhcCCCH----HHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC-HH---
Confidence 42 234478888999999986542 1222 35788999999999999999999999997332 22
Q ss_pred hcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhh
Q 002999 539 ALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGL 618 (859)
Q Consensus 539 ~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~ 618 (859)
.+. .....++.++.+++. .++..|..+|..++..+. ... .++.|...+.+. ...+...+
T Consensus 347 ~~~--~~~~~i~~~l~d~d~--~Ir~~alelL~~l~~~~n-v~~-----iv~eL~~~l~~~-----------d~e~r~~~ 405 (618)
T 1w63_A 347 AVQ--RHRSTIVDCLKDLDV--SIKRRAMELSFALVNGNN-IRG-----MMKELLYFLDSC-----------EPEFKADC 405 (618)
T ss_dssp HHG--GGHHHHHHGGGSSCH--HHHHHHHHHHHHHCCSSS-THH-----HHHHHHHHHHHC-----------CHHHHHHH
T ss_pred HHH--HHHHHHHHHccCCCh--hHHHHHHHHHHHHccccc-HHH-----HHHHHHHHHHhC-----------CHHHHHHH
Confidence 222 466788999988776 899999999999987432 111 123444444431 12356667
Q ss_pred hhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceec
Q 002999 619 LGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICG 698 (859)
Q Consensus 619 ~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (859)
+.++.+++....+... ..++.|+++|+.. ...++..+...+..+....+.+
T Consensus 406 v~~I~~la~k~~~~~~------~~v~~ll~lL~~~-~~~v~~~~~~~l~~ii~~~p~l---------------------- 456 (618)
T 1w63_A 406 ASGIFLAAEKYAPSKR------WHIDTIMRVLTTA-GSYVRDDAVPNLIQLITNSVEM---------------------- 456 (618)
T ss_dssp HHHHHHHHHSSCCCHH------HHHHHHHHHHHHT-GGGSCSSHHHHHHHHHHHSCST----------------------
T ss_pred HHHHHHHHHHhCccHH------HHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcChhH----------------------
Confidence 7777776653222221 2378888999885 6667777777777776543211
Q ss_pred CCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhcc--CChhHHHHHHHHHHhhhhccCcchhhH------HHHHHh
Q 002999 699 KPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAE--EDTNVEIAAVEALSTLIIDTSKNFKRG------VDELER 770 (859)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~d~~~~~~~~------~~~i~~ 770 (859)
...++..|+.+|.+ ....+...+++.|+.+... ...+ ...+..
T Consensus 457 -------------------------~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~----i~~~~~~~~~~~~~~~ 507 (618)
T 1w63_A 457 -------------------------HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL----LVSGQCEEEEPIQVTE 507 (618)
T ss_dssp -------------------------HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH----HTTCCCSSSCCCCCCH
T ss_pred -------------------------HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHH----hcccccccccccCCCH
Confidence 12357788888885 3455566788888887742 0000 000001
Q ss_pred cCChHHHHHHhhh-cCchhHHHHHHHHHHHHHhcc-ccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHhhhc
Q 002999 771 EGALDAVVDLFTE-VRPGLLQERTVWMLERVLRVE-GHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLKQIS 846 (859)
Q Consensus 771 ~g~i~~L~~ll~~-~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 846 (859)
...++.|..++.+ ..++.+|..+++++.+++... +. ...+..-|-....+.|..+|+.|..++.-|...+
T Consensus 508 ~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~------~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~ 579 (618)
T 1w63_A 508 DEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT------VNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYD 579 (618)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcH
Confidence 1234555555532 268889999999999998532 21 2223234455566778999999999999887643
No 64
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=118.57 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=64.8
Q ss_pred CCCcccCcccccccCCCeecC-CCchhcHHHHHHHHHhcccCCCCCCCCCCCccc-CCCCCcchhhhHhHHHHHHHhcc
Q 002999 73 PFKNFLCPLTKQVMKEPVVLE-SAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL-KSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 73 ~~~~~~cpi~~~~m~dPv~~~-~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l-~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
.+++|.||||.++|.|||+++ |||+||+.||.+|+.. .+...||+|++++ ...++.||..+++.|+.|...+.
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE----SDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH----CTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh----cCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 346799999999999999999 9999999999999986 2257999999997 56789999999999999988754
No 65
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.43 E-value=2.4e-10 Score=134.49 Aligned_cols=534 Identities=13% Similarity=0.072 Sum_probs=335.8
Q ss_pred hhhHhHHHHHHHhccc--------ccHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhc
Q 002999 135 IGLAGAIEEWVNRNVE--------VQVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKS 206 (859)
Q Consensus 135 ~~l~~~I~~w~~~~~~--------~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~ 206 (859)
..|+..|...+..... ..+..+...|.+.+ +..+. +++..|--+...+..- .-+.+..++++.+
T Consensus 10 ~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~-~~~k~-~~l~kli~~~~~G~d~------~~~~~~vik~~~s 81 (618)
T 1w63_A 10 IRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREED-NTYRC-RNVAKLLYMHMLGYPA------HFGQLECLKLIAS 81 (618)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTC-TTTHH-HHHHHHHHHHHTTCCC------GGGHHHHHHHHHS
T ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCC-HHHHH-HHHHHHHHHHHcCCCC------cchHHHHHHHHcC
Confidence 3466666665433211 12344555666543 33344 4666544433222211 1245567788888
Q ss_pred CCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHH
Q 002999 207 SSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVL 286 (859)
Q Consensus 207 ~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~ 286 (859)
.+. ..++-+.-.+..++.... +.+ --++..|.+-|+++++.++..|+.+|.++.. ++ +. ...++.
T Consensus 82 ~~~----~~Krl~Yl~~~~~~~~~~--e~~--~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~--~~l~~~ 146 (618)
T 1w63_A 82 QKF----TDKRIGYLGAMLLLDERQ--DVH--LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC--RDLAGE 146 (618)
T ss_dssp SSH----HHHHHHHHHHHHHCCCCH--HHH--HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH--HHHHHH
T ss_pred Cch----HHHHHHHHHHHHHhCCCc--HHH--HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH--HHHHHH
Confidence 776 777777777777776521 111 1246788888999999999999999999974 22 22 447889
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhh
Q 002999 287 LSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQC 365 (859)
Q Consensus 287 Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~g 365 (859)
+.++|. +.++.++..|+.++.++... ++.. + +.++.+..+|.+.++.++..++.+|..++..+..........
T Consensus 147 l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v----~-~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~ 220 (618)
T 1w63_A 147 VEKLLK-TSNSYLRKKAALCAVHVIRKVPELM----E-MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKL 220 (618)
T ss_dssp HHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGG----G-GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTT
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHHHChHHH----H-HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999 88999999999999999853 3322 2 678888889999999999999999999987543211112334
Q ss_pred HHHHHHHhC-----------------ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhcc---CCCCHHHHHH
Q 002999 366 AKVLVELLS-----------------KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKS---HDASPELKEL 425 (859)
Q Consensus 366 i~~Lv~lL~-----------------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~---~~~~~~~~~~ 425 (859)
++.|+.+|. ++-.+...+.+|..++..++.. .....+.|..++... .+....+.-.
T Consensus 221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHH
Confidence 566766553 5677888999999998765321 123456666666421 1123578888
Q ss_pred HHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHH
Q 002999 426 AAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKY 505 (859)
Q Consensus 426 a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~ 505 (859)
|+.++.++...+ .+ ...++..|..+|.+.+++++..++.+|..++.... ..+. .....
T Consensus 297 a~~~i~~l~~~~-------------~l-~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p------~~~~--~~~~~ 354 (618)
T 1w63_A 297 TVLTIMDIKSES-------------GL-RVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH------NAVQ--RHRST 354 (618)
T ss_dssp HHHHHHHSCCCH-------------HH-HHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH------HHHG--GGHHH
T ss_pred HHHHHHhcCCCH-------------HH-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH------HHHH--HHHHH
Confidence 888888763311 11 13568889999999999999999999999986522 1121 24567
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCc-HHHHHHH
Q 002999 506 IIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSE-EEVKTLL 584 (859)
Q Consensus 506 Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~l~ 584 (859)
++..+.+++..+|..|+.+|..++...+ . + ..++.|...+.+.+. +.+..++..|+.++..- +...+
T Consensus 355 i~~~l~d~d~~Ir~~alelL~~l~~~~n--v-~-----~iv~eL~~~l~~~d~--e~r~~~v~~I~~la~k~~~~~~~-- 422 (618)
T 1w63_A 355 IVDCLKDLDVSIKRRAMELSFALVNGNN--I-R-----GMMKELLYFLDSCEP--EFKADCASGIFLAAEKYAPSKRW-- 422 (618)
T ss_dssp HHHGGGSSCHHHHHHHHHHHHHHCCSSS--T-H-----HHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHSSCCCHHH--
T ss_pred HHHHccCCChhHHHHHHHHHHHHccccc--H-H-----HHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhCccHHH--
Confidence 8888999999999999999999973221 1 1 245778888887775 89999999999997632 11122
Q ss_pred HhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCC-ChHHHHHHHH
Q 002999 585 EATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFP-SKARVKQLAA 663 (859)
Q Consensus 585 ~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~vk~~Aa 663 (859)
.++.++.+|...... +...++..+..+.. .+++.+.. +++.|+++|.++ ..+.....++
T Consensus 423 ---~v~~ll~lL~~~~~~-----------v~~~~~~~l~~ii~-~~p~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~ 482 (618)
T 1w63_A 423 ---HIDTIMRVLTTAGSY-----------VRDDAVPNLIQLIT-NSVEMHAY-----TVQRLYKAILGDYSQQPLVQVAA 482 (618)
T ss_dssp ---HHHHHHHHHHHTGGG-----------SCSSHHHHHHHHHH-HSCSTHHH-----HHHHHHHHHHHCCSCSHHHHHHH
T ss_pred ---HHHHHHHHHHhccch-----------hHHHHHHHHHHHHh-cChhHHHH-----HHHHHHHHHhcccccHHHHHHHH
Confidence 245666666652210 11112222333222 13444443 356677777741 1334445699
Q ss_pred HHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhc--cCChh
Q 002999 664 HGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLA--EEDTN 741 (859)
Q Consensus 664 ~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~--~~~~~ 741 (859)
|.||.++..-.+-. .....+ +..-...+++.|..+++ ..++.
T Consensus 483 wilGEy~~~i~~~~-~~~~~~-----------------------------------~~~~~~~~~~~l~~~l~~~~~~~~ 526 (618)
T 1w63_A 483 WCIGEYGDLLVSGQ-CEEEEP-----------------------------------IQVTEDEVLDILESVLISNMSTSV 526 (618)
T ss_dssp HHHHHHHHHHTTCC-CSSSCC-----------------------------------CCCCHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHhhhHHHhcccc-cccccc-----------------------------------cCCCHHHHHHHHHHHHhccCCCHH
Confidence 99998876432100 000000 00001234566666665 57899
Q ss_pred HHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHH
Q 002999 742 VEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVL 801 (859)
Q Consensus 742 v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~ 801 (859)
++..++.|+..+... ..+. .. -+..+++....+.+.++|++|...+.-+.
T Consensus 527 vr~~~lta~~Kl~~~-~~~~---~~------~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 527 TRGYALTAIMKLSTR-FTCT---VN------RIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHHHHHTT-CSSC---HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-Ccch---HH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 999999999999965 2111 11 12233333334588999999987665554
No 66
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.39 E-value=6.7e-11 Score=124.87 Aligned_cols=259 Identities=15% Similarity=0.082 Sum_probs=194.5
Q ss_pred HHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchH
Q 002999 320 LAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNAT 397 (859)
Q Consensus 320 i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~ 397 (859)
+...+.++.|+..|.++++.++..++.+|+++.. ...++.|+.+|. ++.++..|+++|..+........
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 3456789999999999999999999999998862 345789999998 78899999999999875433211
Q ss_pred HHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHH
Q 002999 398 ILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTL 477 (859)
Q Consensus 398 ~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~ 477 (859)
. .++.|...+. .+.+..++..++++|.++....+. ....+++.|+.++.+.++.++..++
T Consensus 90 ~-----l~~~L~~~~~--~d~~~~vr~~a~~aL~~l~~~~~~-------------~~~~~~~~L~~~l~d~~~~vR~~a~ 149 (280)
T 1oyz_A 90 N-----VFNILNNMAL--NDKSACVRATAIESTAQRCKKNPI-------------YSPKIVEQSQITAFDKSTNVRRATA 149 (280)
T ss_dssp H-----HHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHCGG-------------GHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred H-----HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhccCCc-------------ccHHHHHHHHHHhhCCCHHHHHHHH
Confidence 1 2333332222 246689999999999998753321 2346789999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCC
Q 002999 478 RILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQ 557 (859)
Q Consensus 478 ~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 557 (859)
++|.++... ..++.|+.+++++++.+|..|+++|..+. ..+ ...++.|+.++.+++
T Consensus 150 ~aL~~~~~~--------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~~~---------~~~~~~L~~~l~d~~ 205 (280)
T 1oyz_A 150 FAISVINDK--------------ATIPLLINLLKDPNGDVRNWAAFAININK-YDN---------SDIRDCFVEMLQDKN 205 (280)
T ss_dssp HHHHTC-----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT-CCC---------HHHHHHHHHHTTCSC
T ss_pred HHHHhcCCH--------------HHHHHHHHHHcCCCHHHHHHHHHHHHhhc-cCc---------HHHHHHHHHHhcCCC
Confidence 999987532 37899999999999999999999998884 111 146789999998877
Q ss_pred CchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHH
Q 002999 558 SANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMV 637 (859)
Q Consensus 558 ~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i 637 (859)
. .++..|+.+|+++.. ..+++.|+..|.+. . +...++.+|..+.
T Consensus 206 ~--~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~---~----------vr~~a~~aL~~i~----------- 249 (280)
T 1oyz_A 206 E--EVRIEAIIGLSYRKD----------KRVLSVLCDELKKN---T----------VYDDIIEAAGELG----------- 249 (280)
T ss_dssp H--HHHHHHHHHHHHTTC----------GGGHHHHHHHHTSS---S----------CCHHHHHHHHHHC-----------
T ss_pred H--HHHHHHHHHHHHhCC----------HhhHHHHHHHhcCc---c----------HHHHHHHHHHhcC-----------
Confidence 6 899999999999874 45678888888651 1 2344555665553
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHhhh
Q 002999 638 REQRLMTIFRDQLSFPSKARVKQLAAHGLKN 668 (859)
Q Consensus 638 ~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ 668 (859)
...++|.|.+++.+..++.+...+..+|.+
T Consensus 250 -~~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 250 -DKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -CGGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -chhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 236789999999764467788777777653
No 67
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.38 E-value=3.3e-10 Score=144.82 Aligned_cols=557 Identities=13% Similarity=0.042 Sum_probs=332.8
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHH-HHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhh
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKK-IMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCK 275 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~ 275 (859)
++.|+.-+.+.|. ++|..|...|.+....+.... .-.....++.|+..|.+.+..+|..|+.+|..++..-.. .
T Consensus 8 l~~lL~~l~s~d~----~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~ 82 (1230)
T 1u6g_C 8 ISNLLEKMTSSDK----DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-Y 82 (1230)
T ss_dssp HHHHHHHTTCSSH----HHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHHHHHhcCCCCH----hHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-H
Confidence 4566666777777 999999998887654321100 001124577888999988999999999999998864221 1
Q ss_pred HhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh------HHHHhcCChHHHHHHhc-cCChHHHHHHHHHH
Q 002999 276 SVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV------QPLAAAGRFEPLINRLC-QGSDNVQIEMAFLV 348 (859)
Q Consensus 276 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~------~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L 348 (859)
.+ ...++.|+..+. ++++.++..|+.+|..++..-... ..-.-...+|.|+..+. +.+..++..+..+|
T Consensus 83 ~~---~~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 83 QV---ETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp HH---HHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 11 346788888887 677788999999999887431111 11112357889999998 57889999999999
Q ss_pred HHhcCCCc--cHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHH
Q 002999 349 GKLTLTNS--CKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKE 424 (859)
Q Consensus 349 ~~la~~~~--~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~ 424 (859)
..++.... -.. .....++.|+..|. ++.++..|+.+|..++...... + -...++.|+..|.... +..++.
T Consensus 159 ~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~--~~~~r~ 232 (1230)
T 1u6g_C 159 ADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKND--SMSTTR 232 (1230)
T ss_dssp HHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC--SSCSCT
T ss_pred HHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCC--chhHHH
Confidence 98874211 111 11334466777777 7789999999999998765322 1 2346888998887632 234566
Q ss_pred HHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChh-HHHHHHHHhhCCCH
Q 002999 425 LAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQA-AESVATHIKSGDGI 503 (859)
Q Consensus 425 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~-~~~~~~~i~~~g~i 503 (859)
.++.++..++...+..-. -.-...++.++..+.+.+++++..++.++..++..-.. ....... .+
T Consensus 233 ~a~~~l~~l~~~~~~~~~---------~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~-----li 298 (1230)
T 1u6g_C 233 TYIQCIAAISRQAGHRIG---------EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-----II 298 (1230)
T ss_dssp THHHHHHHHHHHSSGGGT---------TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH-----HH
T ss_pred HHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHH-----HH
Confidence 778888888765432110 11256899999999888889999988888877654211 0001111 12
Q ss_pred HHHHHhhcC-------------------------------------CChhHHHHHHHHHHHHhhhccHHHHHhcCCCCch
Q 002999 504 KYIIQFLEH-------------------------------------PEVEHRTYAFRLTRILSERIGQDLAYALKPFDKL 546 (859)
Q Consensus 504 ~~Lv~lL~~-------------------------------------~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i 546 (859)
+.++..+.. ...++|..|+.+|..++...++.....+. ..+
T Consensus 299 ~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~--~l~ 376 (1230)
T 1u6g_C 299 NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK--TVS 376 (1230)
T ss_dssp HHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT--TTH
T ss_pred HHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH--HHH
Confidence 333332211 11356888999999887433322223332 467
Q ss_pred HHHHHhhccCCCchhHHHHHHHHHHHhcCCcH----------------HHHHHHHhccHHHHHHHHhhhcccccCCCCCC
Q 002999 547 VLFKDKILDNQSANCERSDAACILANIQLSEE----------------EVKTLLEATFIKWIVITLQTHKSSFNTRSSRP 610 (859)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~----------------~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~ 610 (859)
+.|+..+.+.+. +++..++.++..+...-. .....+ ...++.++..+...-.. .
T Consensus 377 ~~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ll~~l~~~l~~-------~ 446 (1230)
T 1u6g_C 377 PALISRFKEREE--NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTML-QSQVPNIVKALHKQMKE-------K 446 (1230)
T ss_dssp HHHHSTTSCSSS--HHHHHHHHHHHHHHHHHCCC------------CCCHHHHH-HHHTTHHHHHHHHHTTC-------S
T ss_pred HHHHHHcCCCch--HHHHHHHHHHHHHHHHhccccccccCccccccccchHHHH-HHHhhHHHHHHHHHhcc-------C
Confidence 888888877776 889888888776643100 000000 11223333332221110 0
Q ss_pred cchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCCh--HHHHHHHHHHhhhhhhhcccccccCCCCCCCcc
Q 002999 611 ISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSK--ARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRR 688 (859)
Q Consensus 611 ~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~--~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~ 688 (859)
......+++.+|..+........... -..++|.+.++|.++ + ..++..++.++..+......
T Consensus 447 ~~~vr~~~~~~L~~l~~~~~~~l~~~--l~~ll~~l~~~L~d~-~~~~~v~~~a~~~l~~~~~~~~~------------- 510 (1230)
T 1u6g_C 447 SVKTRQCCFNMLTELVNVLPGALTQH--IPVLVPGIIFSLNDK-SSSSNLKIDALSCLYVILCNHSP------------- 510 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTTTGGG--HHHHHHHHHHHTTCS-SSCHHHHHHHHHHHHHHHHSSCG-------------
T ss_pred CHHHHHHHHHHHHHHHHHchhhhHHH--HHHHHHHHHHHHcCC-CCcchHHHHHHHHHHHHHHhCCH-------------
Confidence 11234455555555543211111111 124678999999985 5 48899989888877642100
Q ss_pred ccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCc---chhhHH
Q 002999 689 FCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSK---NFKRGV 765 (859)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~---~~~~~~ 765 (859)
..|.-.-...++.|+..+.+.+..|+..|+.++..++..-+. ......
T Consensus 511 -----------------------------~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~ 561 (1230)
T 1u6g_C 511 -----------------------------QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA 561 (1230)
T ss_dssp -----------------------------GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred -----------------------------HHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 000001134688899999999999988899999888742000 000000
Q ss_pred HHHHhcCChHHHHHHhh-hcCchhHHHHHHHHHHHHHhcc-ccccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002999 766 DELEREGALDAVVDLFT-EVRPGLLQERTVWMLERVLRVE-GHSHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNLK 843 (859)
Q Consensus 766 ~~i~~~g~i~~L~~ll~-~~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L~ 843 (859)
.... ..-++.++..+. ...+.++|+.|+.+|..+.... +....+ -..+...|.+.+.+ ..+|..+.+++..+.
T Consensus 562 ~~~~-~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~--~~~~l~~L~~~l~~--e~~r~~~~~al~~i~ 636 (1230)
T 1u6g_C 562 TPYI-KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD--LPNTLQIFLERLKN--EITRLTTVKALTLIA 636 (1230)
T ss_dssp HHHH-HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTH--HHHHHHHHHHHTTS--SSHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhh--HHHHHHHHHHHhcc--chhHHHHHHHHHHHH
Confidence 0111 123456677772 1367889999999999998642 211111 12233455555553 457788888887776
Q ss_pred h
Q 002999 844 Q 844 (859)
Q Consensus 844 ~ 844 (859)
.
T Consensus 637 ~ 637 (1230)
T 1u6g_C 637 G 637 (1230)
T ss_dssp T
T ss_pred h
Confidence 4
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.27 E-value=2.3e-10 Score=115.16 Aligned_cols=190 Identities=19% Similarity=0.190 Sum_probs=141.8
Q ss_pred CCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHH
Q 002999 500 GDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEE 579 (859)
Q Consensus 500 ~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~ 579 (859)
.+.++.|+.+|+++++.+|..|+.+|..+. ..+.++.|+.+|.+++. .++..|+.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~------------~~~~~~~L~~~l~~~~~--~vr~~a~~aL~~~~~---- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG------------DERAVEPLIKALKDEDA--WVRRAAADALGQIGD---- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTCSCH--HHHHHHHHHHHHHCC----
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CccHHHHHHHHHcCCCH--HHHHHHHHHHHhhCC----
Confidence 346788888888888888888888887763 12577888888887664 777777776665432
Q ss_pred HHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHH
Q 002999 580 VKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVK 659 (859)
Q Consensus 580 ~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk 659 (859)
.+.+|.|+++|.++ ++.+|
T Consensus 80 ------------------------------------------------------------~~~~~~L~~~l~~~-~~~vr 98 (211)
T 3ltm_A 80 ------------------------------------------------------------ERAVEPLIKALKDE-DGWVR 98 (211)
T ss_dssp ------------------------------------------------------------GGGHHHHHHHTTCS-SHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHcCC-CHHHH
Confidence 13467778888885 89999
Q ss_pred HHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCC
Q 002999 660 QLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEED 739 (859)
Q Consensus 660 ~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 739 (859)
..|+++|+.+.. .++++.|+.+|++++
T Consensus 99 ~~a~~aL~~~~~-----------------------------------------------------~~~~~~L~~~l~d~~ 125 (211)
T 3ltm_A 99 QSAAVALGQIGD-----------------------------------------------------ERAVEPLIKALKDED 125 (211)
T ss_dssp HHHHHHHHHHCC-----------------------------------------------------GGGHHHHHHHTTCSS
T ss_pred HHHHHHHHHhCc-----------------------------------------------------HHHHHHHHHHHhCCC
Confidence 999999987631 235888999999999
Q ss_pred hhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccchhhHHH
Q 002999 740 TNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRA 819 (859)
Q Consensus 740 ~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 819 (859)
+.|+..|+.+|+.+... .+++.|.+++. ++++.++..|+++|.++- ....+..
T Consensus 126 ~~vr~~a~~aL~~~~~~---------------~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~-----------~~~~~~~ 178 (211)
T 3ltm_A 126 WFVRIAAAFALGEIGDE---------------RAVEPLIKALK-DEDGWVRQSAADALGEIG-----------GERVRAA 178 (211)
T ss_dssp HHHHHHHHHHHHHHCCG---------------GGHHHHHHHTT-CSSHHHHHHHHHHHHHHC-----------SHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH---------------HHHHHHHHHHc-CCCHHHHHHHHHHHHHhC-----------chhHHHH
Confidence 99999999999988622 35678888887 488899999999998883 2345578
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHhhhcCC
Q 002999 820 LVEAFKHGNANAKRHAQEALTNLKQISGL 848 (859)
Q Consensus 820 Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~ 848 (859)
|..+++++++.+|..|..+|..+...+..
T Consensus 179 L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 179 MEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 89999999999999999999888775433
No 69
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.24 E-value=4.7e-12 Score=115.55 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=61.3
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC-CCCcchhhhHhHHHHHHHh
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS-LELKPNIGLAGAIEEWVNR 147 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~-~~l~pn~~l~~~I~~w~~~ 147 (859)
++|.||||.++|.|||+++|||+||+.||.+|+.. + ...||+||.++.. .++.+|..+++.|+.|.-.
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA----Q-VFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT----T-CCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH----C-cCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 46999999999999999999999999999999985 2 5699999999977 7899999999999988643
No 70
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.21 E-value=6.1e-12 Score=109.80 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=63.3
Q ss_pred CcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhcc
Q 002999 75 KNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRNV 149 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~~ 149 (859)
+++.||||.+.|.|||++ +|||+||+.||.+|+.. ..+||+|+.++...++.+|..+++.|+.|.....
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY------KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC------CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 468999999999999988 99999999999999986 5799999999988899999999999999987653
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.20 E-value=9.2e-10 Score=110.69 Aligned_cols=188 Identities=19% Similarity=0.162 Sum_probs=155.7
Q ss_pred cCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhh
Q 002999 194 AGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY 273 (859)
Q Consensus 194 ~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 273 (859)
.+.++.|+.+|++++. .+|..|+..|..+.. ..+++.|+.+|.+++..++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~----~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSY----YVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSH----HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-----
T ss_pred HhHHHHHHHHHcCCCH----HHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-----
Confidence 4678999999998877 999999999987643 367999999999999999999999998874
Q ss_pred hhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 002999 274 CKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTL 353 (859)
Q Consensus 274 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~ 353 (859)
..++++.|+.+|. ++++.++..|+.+|.++.. .+.++.|+.+|.++++.++..++.+|+++..
T Consensus 79 ------~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 79 ------DERAVEPLIKALK-DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp ------CGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred ------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 2568899999999 8899999999999998853 3578999999999999999999999998853
Q ss_pred CCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002999 354 TNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIA 431 (859)
Q Consensus 354 ~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~ 431 (859)
...++.|+.+|. ++.++..|+.+|..+.. ..+++.|..++.. ++..++..|..+|.
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLE 199 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 246788999998 88999999999999843 3467889999865 56789999999999
Q ss_pred HhhcCCCc
Q 002999 432 NVVSNPGC 439 (859)
Q Consensus 432 nL~~~~~~ 439 (859)
++.....+
T Consensus 200 ~~~~~~~~ 207 (211)
T 3ltm_A 200 THKSFNHH 207 (211)
T ss_dssp C-------
T ss_pred hcCCCCCC
Confidence 88766544
No 72
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=116.57 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=61.5
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC-CCcchhhhHhHHHHHHHh
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL-ELKPNIGLAGAIEEWVNR 147 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~-~l~pn~~l~~~I~~w~~~ 147 (859)
++|.||||.++|.|||+++|||+||+.||.+|+.. + ..+||+|+.++... .+.+|..|++.|+.|...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA----Q-VFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT----T-CCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh----C-CCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 56999999999999999999999999999999986 2 46899999999877 899999999999988643
No 73
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.19 E-value=2.9e-09 Score=120.62 Aligned_cols=383 Identities=11% Similarity=0.101 Sum_probs=242.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccC--ChHHHHHHHHHHHHhcCCCccH---------HHH-
Q 002999 294 LELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQG--SDNVQIEMAFLVGKLTLTNSCK---------EHI- 361 (859)
Q Consensus 294 ~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~la~~~~~~---------~~i- 361 (859)
+.|..++..|...|.++...+ ..+.+..|+.++.+. +..+|..|+.+|.++....... ..+
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~ 84 (462)
T 1ibr_B 12 SPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID 84 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCC
Confidence 568888999998888765320 134566788888654 6789999999999987543210 001
Q ss_pred --HHhhH-HHHHHHhC--ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 362 --ARQCA-KVLVELLS--KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 362 --~~~gi-~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
....+ ..|+..|. ++.+ ..++.+|..++... +... -.+.+|.|+..+.+.. .+..+++.|+.+|..++.
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 85 ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPN-STEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHH
Confidence 11223 45777777 6667 88888999987653 1110 1467888999986511 157899999999999987
Q ss_pred CCCcccccccccccCcccccchHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChhH---HHHHHHHhhCCCHHHHHHhh
Q 002999 436 NPGCWELASADKLGHSMQSESIVSSLLGLLSGV--SPQCQVSTLRILCGIASSPQAA---ESVATHIKSGDGIKYIIQFL 510 (859)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~--~~~~~~~a~~aL~~La~~~~~~---~~~~~~i~~~g~i~~Lv~lL 510 (859)
....... .-....+++.++.++.+. ++.++..+++++.++...-... ...... .++.|...+
T Consensus 160 ~~~~~~~--------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-----l~~~l~~~~ 226 (462)
T 1ibr_B 160 DIDPEQL--------QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF-----IMQVVCEAT 226 (462)
T ss_dssp HSCGGGT--------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH-----HHHHHHHHT
T ss_pred hCCchhh--------HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHHHHHHhc
Confidence 5321110 111245788888999887 6899999999999875432110 001111 256666777
Q ss_pred cCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHH--------
Q 002999 511 EHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKT-------- 582 (859)
Q Consensus 511 ~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-------- 582 (859)
.+++.++|..++++|..+...........+.. +.++.++..+.+.+. +++..|+..+..++........
T Consensus 227 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~--~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCSSH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 88889999999999999985443332222321 567777777877665 8889999988888753211110
Q ss_pred ----------HHH---hccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHh
Q 002999 583 ----------LLE---ATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQ 649 (859)
Q Consensus 583 ----------l~~---~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~l 649 (859)
+.+ ...+|.++..+........ .........+..+|..++........ ..++|.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~----~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~ 374 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD----DDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEH 374 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCC----TTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHH
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhcccccc----cccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHH
Confidence 111 2234444444433110000 01112344555555555432111211 2467888889
Q ss_pred hcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCch
Q 002999 650 LSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIK 729 (859)
Q Consensus 650 L~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~ 729 (859)
|.+. ++.+|..|..+|+.++.+.... .+.. .-...++
T Consensus 375 l~~~-~~~~r~aal~~l~~l~~~~~~~--------------------~~~~----------------------~l~~~~~ 411 (462)
T 1ibr_B 375 IKNP-DWRYRDAAVMAFGCILEGPEPS--------------------QLKP----------------------LVIQAMP 411 (462)
T ss_dssp TTCS-SHHHHHHHHHHHHHTSSSSCTT--------------------TTCT----------------------TTTTHHH
T ss_pred hcCC-ChHHHHHHHHHHHHHhcCCcHH--------------------HHHH----------------------HHHHHHH
Confidence 9986 9999999999999987532100 0000 0135789
Q ss_pred HHHhhhccCChhHHHHHHHHHHhhhhc
Q 002999 730 PLVDLLAEEDTNVEIAAVEALSTLIID 756 (859)
Q Consensus 730 ~Lv~lL~~~~~~v~~~A~~aL~~L~~d 756 (859)
.|+.+|.++++.|+..|+.+|++++..
T Consensus 412 ~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 412 TLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999965
No 74
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.14 E-value=1.8e-09 Score=122.25 Aligned_cols=381 Identities=13% Similarity=0.078 Sum_probs=241.7
Q ss_pred CccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCc-chH--------HH
Q 002999 165 PEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDE-ESK--------KI 235 (859)
Q Consensus 165 ~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~-~~r--------~~ 235 (859)
++.+...+|-..|..+...+ ..+.+..|+.++.+.+.+ ..+|..|+..|.++.... ..+ ..
T Consensus 13 ~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~--~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~ 82 (462)
T 1ibr_B 13 PDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNS--QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSC--HHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence 34444445777787754320 234567788888775321 289999999999986431 000 00
Q ss_pred H---HhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCC--ChHHHHHHHHHHHHh
Q 002999 236 M---LEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLE--LPALSNLADEVFKKM 310 (859)
Q Consensus 236 i---~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~~a~~aL~nL 310 (859)
+ .....-..|+..|.+.+..+ ..++.+|..++....... .-++.++.|+..+. ++ ++.++..++.+|..+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~-~~~~~~~~r~~al~~l~~l 157 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVT-NPNSTEHMKESTLEAIGYI 157 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHH-CTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHH
Confidence 0 01123345777787777677 778888888876532111 12678999999999 66 889999999999999
Q ss_pred cCC--CcChHHHHhcCChHHHHHHhccC--ChHHHHHHHHHHHHhcCCCc-c--HHHHHHhhHHHHHHHhC--ChhHHHH
Q 002999 311 ERI--EEIVQPLAAAGRFEPLINRLCQG--SDNVQIEMAFLVGKLTLTNS-C--KEHIARQCAKVLVELLS--KPAGRAA 381 (859)
Q Consensus 311 ~~~--~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~la~~~~-~--~~~i~~~gi~~Lv~lL~--~~~~~~~ 381 (859)
+.. ++...... ...++.++..|.+. +..++..++.++.++...-. + ........++.|...+. ++.++..
T Consensus 158 ~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 158 CQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 853 21111111 23677888888877 78999999999998754211 1 01111112455556666 7889999
Q ss_pred HHHHHHHhhCCCcch-HHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCccc---------ccccccccCc
Q 002999 382 SLKALYNLSGLDDNA-TILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWE---------LASADKLGHS 451 (859)
Q Consensus 382 a~~aL~~Ls~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~---------~~~~~~~~~~ 451 (859)
++.+|..++...... ...+..++++.++..+.. .+..++..|+..+.+++....... ..+.......
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 313 (462)
T ss_dssp HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC---SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHH
Confidence 999999998654221 111111667777777753 567899999999998876420000 0000000000
Q ss_pred ccc---cchHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHH
Q 002999 452 MQS---ESIVSSLLGLLSGV-------SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYA 521 (859)
Q Consensus 452 l~~---~~~i~~Ll~LL~~~-------~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 521 (859)
+.. ...++.++..+... +..++..++.+|..++..-.. .+.. ..++.+...+++++..+|..|
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~~-----~~~~~l~~~l~~~~~~~r~aa 386 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-----HVLPFIKEHIKNPDWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHH-----HHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHHH-----HHHHHHHHHhcCCChHHHHHH
Confidence 111 34566777777432 236788888888888764221 1112 246777788899999999999
Q ss_pred HHHHHHHhhhccHH-HHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 522 FRLTRILSERIGQD-LAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 522 ~~~L~~Ls~~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
+.+|..++...+.+ ....+ ...++.|+.++.+++. .++..|+++|++++.
T Consensus 387 l~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~--~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSV--VVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHH
Confidence 99999998433211 11122 2689999999988775 899999999999875
No 75
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.13 E-value=2.2e-09 Score=106.98 Aligned_cols=182 Identities=19% Similarity=0.175 Sum_probs=154.9
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhh
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYC 274 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~ 274 (859)
+..+.++++|++++. .+|..|+.+|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~----~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------ 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSY----YVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------ 73 (201)
T ss_dssp HHHHHHHHHTTCSCH----HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------
T ss_pred cchHHHHHHhcCCCH----HHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC------
Confidence 567899999999988 999999999987653 367999999999999999999999998873
Q ss_pred hHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 002999 275 KSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT 354 (859)
Q Consensus 275 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~ 354 (859)
...+++.|+.+|. ++++.++..|+.+|.++.. ..+++.|+.+|.+.++.++..++.+|+++..
T Consensus 74 -----~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 74 -----DERAVEPLIKALK-DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----CGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred -----CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 2458899999999 7899999999999998753 3478999999999999999999999998753
Q ss_pred CccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002999 355 NSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIAN 432 (859)
Q Consensus 355 ~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~n 432 (859)
...++.|+.+|. ++.++..|+.+|..+.. ..+++.|..++.. ++..++..|..+|..
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 346788999998 78899999999999832 2367889999865 567999999999987
Q ss_pred hh
Q 002999 433 VV 434 (859)
Q Consensus 433 L~ 434 (859)
+-
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 64
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.10 E-value=4.5e-09 Score=104.73 Aligned_cols=183 Identities=16% Similarity=0.095 Sum_probs=156.0
Q ss_pred hCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChH
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQ 318 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~ 318 (859)
.+..+.++.+|++++..++..|+..|..+.. .++++.|+.+|. ++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC------
Confidence 3568899999999999999999999998742 467899999998 8899999999999988753
Q ss_pred HHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcch
Q 002999 319 PLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNA 396 (859)
Q Consensus 319 ~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~ 396 (859)
.++++.|+.+|.+.++.++..++.+|+++.. ...++.|+.+|. ++.++..|+++|.++..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 2578999999999999999999999998753 246788999998 88899999999999853
Q ss_pred HHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHH
Q 002999 397 TILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVST 476 (859)
Q Consensus 397 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a 476 (859)
.+.++.|+.++.+ ++..++..|+.+|..+. ...+++.|..++.+.++.++..+
T Consensus 137 -----~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~-------------------~~~~~~~L~~~l~d~~~~vr~~A 189 (201)
T 3ltj_A 137 -----ERAVEPLIKALKD---EDGWVRQSAADALGEIG-------------------GERVRAAMEKLAETGTGFARKVA 189 (201)
T ss_dssp -----GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHC-------------------SHHHHHHHHHHHHHCCHHHHHHH
T ss_pred -----HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhC-------------------chhHHHHHHHHHhCCCHHHHHHH
Confidence 4578999999954 56799999999999772 24568889999999999999999
Q ss_pred HHHHHHhc
Q 002999 477 LRILCGIA 484 (859)
Q Consensus 477 ~~aL~~La 484 (859)
..+|..+.
T Consensus 190 ~~aL~~l~ 197 (201)
T 3ltj_A 190 VNYLETHK 197 (201)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 99998874
No 77
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.10 E-value=3.9e-11 Score=106.46 Aligned_cols=67 Identities=13% Similarity=0.350 Sum_probs=59.6
Q ss_pred CcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC----CCcchhhhHhHHHHHHHh
Q 002999 75 KNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL----ELKPNIGLAGAIEEWVNR 147 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~----~l~pn~~l~~~I~~w~~~ 147 (859)
+++.||||.++|.|||++ +|||+||+.||.+|+.. ..+||.|+.++... .+.+|..+++.|+.|...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET------SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS------CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh------CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 469999999999999987 99999999999999987 57999999998765 688999999999887643
No 78
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=4.7e-11 Score=104.07 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=59.4
Q ss_pred CcccCcccccccCCCee-cCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHh
Q 002999 75 KNFLCPLTKQVMKEPVV-LESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNR 147 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~-~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~ 147 (859)
+++.||||++.|.|||+ ++|||+||+.||.+|+.. + ..+||+||.++...++.+|..+.+.++.....
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTE----Q-RAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHH----T-CSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHH----C-cCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 56999999999999998 999999999999999998 2 27999999999888999998888777665443
No 79
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=3.2e-11 Score=102.13 Aligned_cols=67 Identities=25% Similarity=0.477 Sum_probs=57.6
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHH
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAI 141 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I 141 (859)
++|.||||.+.|.+||+++|||+||+.||.+|+......+....||+|+.++...++.||..+++.|
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 5699999999999999999999999999999998732122367899999999888999998887654
No 80
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.08 E-value=1.9e-07 Score=109.48 Aligned_cols=530 Identities=13% Similarity=0.077 Sum_probs=318.3
Q ss_pred hhHhHHHHHHHhccc--------ccHHHHHhhhhcC-CCccchHHHHHHHHHHH-HhcCCcchhHHHhcCcHHHHHHHHh
Q 002999 136 GLAGAIEEWVNRNVE--------VQVSTVVETLRKE-NPEVDGLDKALDIVFKI-SEEHPSNRYRVRNAGVVLLIVKLLK 205 (859)
Q Consensus 136 ~l~~~I~~w~~~~~~--------~~i~~l~~~L~~~-~~~~~~~~~al~~L~~l-~~~~~~~r~~i~~~g~i~~Lv~lL~ 205 (859)
.|+..|...+..... ..+..+...+.+. +.+.....+++..|--+ ..+.+. ..+.+..++++.
T Consensus 12 ~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~-------s~~~~~vvkl~~ 84 (621)
T 2vgl_A 12 GLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDI-------DFGHMEAVNLLS 84 (621)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCC-------CSCHHHHHHGGG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCC-------chhHHHHHHHhc
Confidence 466666666543321 1234455566632 22222223455554333 323221 134567888888
Q ss_pred cCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHH
Q 002999 206 SSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALV 285 (859)
Q Consensus 206 ~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~ 285 (859)
+.+. ..++-+.-.+..++.... +.+ -=++..+.+-|.++++-.+..|+.+|.++.. ++.. ...++
T Consensus 85 s~~~----~~Krl~YL~l~~~~~~~~--e~~--~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~~------~~l~~ 149 (621)
T 2vgl_A 85 SNRY----TEKQIGYLFISVLVNSNS--ELI--RLINNAIKNDLASRNPTFMGLALHCIANVGS-REMA------EAFAG 149 (621)
T ss_dssp CSCH----HHHHHHHHHHHHSCCCCH--HHH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHHH------HHHTT
T ss_pred CCCH----HHHHHHHHHHHHHccCCc--HHH--HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHHH------HHHHH
Confidence 8887 888888888888886622 111 1136677788889999999999999999954 3322 33667
Q ss_pred HHHHhh--cCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHH
Q 002999 286 LLSSMT--GNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIAR 363 (859)
Q Consensus 286 ~Lv~lL--~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~ 363 (859)
.+.++| . +.++-+++.|+.++.++...... .+-..+.++.|..+|.+.++.++..+..+|..++..+.. . ..
T Consensus 150 ~v~~~l~~~-d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~-~~ 223 (621)
T 2vgl_A 150 EIPKILVAG-DTMDSVKQSAALCLLRLYRTSPD--LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E-FK 223 (621)
T ss_dssp HHHHHHHCS-SSCHHHHHHHHHHHHHHHHHCGG--GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H-HT
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHHHHHHHhChh--hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H-HH
Confidence 888888 6 78999999999999999863221 122258899999999999999999999999988764432 1 11
Q ss_pred hhHHHHHHHhC-------------------ChhHHHHHHHHHHHhhCCC--cchHHHHHcCcHHHHHHHHhccC------
Q 002999 364 QCAKVLVELLS-------------------KPAGRAASLKALYNLSGLD--DNATILVDSALLPALTDILFKSH------ 416 (859)
Q Consensus 364 ~gi~~Lv~lL~-------------------~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~G~i~~Lv~lL~~~~------ 416 (859)
..++.+++.|. ++-.+...+..|..++..+ +.+..+.+ .++.++..+....
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccccc
Confidence 12333443322 3557777777777776532 22333332 3333333321100
Q ss_pred --CCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHH
Q 002999 417 --DASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVA 494 (859)
Q Consensus 417 --~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~ 494 (859)
.....+.-.|+.++..+...+ .+ ...++..|..+|.+.+++++..++.+|..++.......
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~~~~-------------~~-~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~--- 364 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHDSEP-------------NL-LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE--- 364 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCH-------------HH-HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH---
T ss_pred ccchHHHHHHHHHHHHHhcCCcH-------------HH-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHH---
Confidence 012367777888888774211 11 23568889999998999999999999999987642111
Q ss_pred HHHhhCCCHHHHHHhhc-CCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHh
Q 002999 495 THIKSGDGIKYIIQFLE-HPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANI 573 (859)
Q Consensus 495 ~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L 573 (859)
.+. .-...++..|. +++..+|..++.+|..++ ++.+.+. .+..|...+.+.+. +.+..++..++.+
T Consensus 365 -~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~-----Iv~eL~~yl~~~d~--~~~~~~v~~I~~l 431 (621)
T 2vgl_A 365 -AVK--THIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQ-----IVAEMLSYLETADY--SIREEIVLKVAIL 431 (621)
T ss_dssp -HHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHH-----HHHHHHHHHHHCCH--HHHHHHHHHHHHH
T ss_pred -HHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHH-----HHHHHHHHHHhcCH--HHHHHHHHHHHHH
Confidence 121 24567778888 888999999999999996 2233222 45567777777665 7777788888877
Q ss_pred cCCc-HHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcC
Q 002999 574 QLSE-EEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSF 652 (859)
Q Consensus 574 ~~~~-~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~ 652 (859)
+..- .... -.+..|+.++...... +...++..+..+.. .+++.+..+ +..|.+.+..
T Consensus 432 a~k~~~~~~-----~~v~~Ll~ll~~~~~~-----------v~~ev~~~l~~ii~-~~~~~~~~~-----~~~l~~~l~~ 489 (621)
T 2vgl_A 432 AEKYAVDYT-----WYVDTILNLIRIAGDY-----------VSEEVWYRVIQIVI-NRDDVQGYA-----AKTVFEALQA 489 (621)
T ss_dssp HHHHCSSTH-----HHHHHHHHHHHHHGGG-----------SCSHHHHHHHHHHG-GGCSCHHHH-----HHHHHHHHTS
T ss_pred HHhcCCcHH-----HHHHHHHHHHHhhccc-----------chHHHHHHHHHHHh-CChhHHHHH-----HHHHHHHHcC
Confidence 6310 0001 1234455555542110 11122223333322 134444433 4567777776
Q ss_pred C-ChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHH
Q 002999 653 P-SKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPL 731 (859)
Q Consensus 653 ~-~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L 731 (859)
+ ....+-..|+|.||..+....+... ..+ ...+..+
T Consensus 490 ~~~~~~li~~~~wilGEy~~~~~~~~~---------------------------~~p----------------~~~l~~l 526 (621)
T 2vgl_A 490 PACHENLVKVGGYILGEFGNLIAGDPR---------------------------SSP----------------LIQFNLL 526 (621)
T ss_dssp SSCCHHHHHHHHHHHHHHTHHHHSSTT---------------------------SCH----------------HHHHHHH
T ss_pred ccchHHHHHHHHHHhcchHHHhcccCC---------------------------CCH----------------HHHHHHH
Confidence 4 2345667888999987654221000 000 0123445
Q ss_pred HhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhh--cCchhHHHHHHHHHHHH
Q 002999 732 VDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTE--VRPGLLQERTVWMLERV 800 (859)
Q Consensus 732 v~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~A~~~l~~~ 800 (859)
.+-+...+..|+..++.|+..+... . ++ ... -|..+++.... +.+.++|++|...+.-+
T Consensus 527 ~~~~~~~~~~v~~~~Lta~~Kl~~~-~--p~-~~~------~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 527 HSKFHLCSVPTRALLLSTYIKFVNL-F--PE-VKA------TIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHH-C--GG-GHH------HHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHH-C--hH-HHH------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5555678899999999999999864 2 21 011 13333333333 58899999998654443
No 81
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.8e-11 Score=99.77 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=50.7
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHh
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAG 139 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~ 139 (859)
+++.||||.+.|.+||+++|||+|++.||.+|+.. ..+||+|+.++. ..+.+|..+.+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA------TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH------CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC------CCcCCCcCcccc-ccCCcHHHHHH
Confidence 45999999999999999999999999999999987 679999999986 66777755443
No 82
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=3.9e-11 Score=101.53 Aligned_cols=67 Identities=16% Similarity=0.479 Sum_probs=57.8
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHH
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAI 141 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I 141 (859)
+++.||||.+.+.+|++++|||+||+.||.+|+......+....||+|+.++...++.||..+++.|
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 5699999999999999999999999999999998632223367999999999988999999887654
No 83
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=9.6e-11 Score=104.88 Aligned_cols=70 Identities=17% Similarity=0.349 Sum_probs=61.6
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHh
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNR 147 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~ 147 (859)
+.+.||||.+.|.+||+++|||+||+.||.+|+... +...+||+|+.++...++.+|..+.+.++.+...
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK---KGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSS---SSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhC---CCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 348899999999999999999999999999999862 2246899999999999999999998888888764
No 84
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=1.8e-11 Score=102.06 Aligned_cols=67 Identities=24% Similarity=0.455 Sum_probs=56.6
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhccc-CCCCCCCCCCCcccCCCCCcchhhhHhHH
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLE-DGRDPTCPVTGQVLKSLELKPNIGLAGAI 141 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~-~~~~~~cP~t~~~l~~~~l~pn~~l~~~I 141 (859)
+++.||||.+.|.+||+++|||+||+.||.+|+..... .+....||+|+.++...++.+|..|++.|
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 56999999999999999999999999999999976210 01257899999999888999998887654
No 85
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.03 E-value=7.5e-11 Score=109.53 Aligned_cols=63 Identities=24% Similarity=0.469 Sum_probs=50.7
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHH
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWV 145 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~ 145 (859)
++|.||||.+.|.|||+++|||+||+.||.+|+.. +.+||+||.++... .+|..+...|..+.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR------KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT------CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc------CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 45889999999999999999999999999999987 67999999988543 23444455555443
No 86
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.00 E-value=1.2e-10 Score=104.93 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=61.6
Q ss_pred CCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHH
Q 002999 72 LPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVN 146 (859)
Q Consensus 72 ~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~ 146 (859)
+..++|.||||+++|.+||+++|||+||+.||.+|+... ..+||+|+.++...++.||..+++.|..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC-----CCCCCCCCCCcCHHhcccCHHHHHHHcccee
Confidence 344679999999999999999999999999999999872 3499999999988889999999988887643
No 87
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.00 E-value=2.3e-10 Score=93.62 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=47.6
Q ss_pred CCcccCcccccccCCCeecC-CCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC-CCCcch
Q 002999 74 FKNFLCPLTKQVMKEPVVLE-SAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS-LELKPN 134 (859)
Q Consensus 74 ~~~~~cpi~~~~m~dPv~~~-~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~-~~l~pn 134 (859)
++++.||||.+.|.|||+++ |||+|++.||.+|+... + ..+||+||+++.. ..+.+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~-~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---D-EHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS---S-SSCCSSSCCSSCCTTTTTCT
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc---C-CCcCCCCCCcCCCccccccC
Confidence 36799999999999999999 99999999999999871 2 4799999987533 445555
No 88
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=6.6e-11 Score=106.54 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=60.6
Q ss_pred CcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHHHhc
Q 002999 75 KNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWVNRN 148 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~~~~ 148 (859)
++|.||||.++|.|||++ +|||+||+.||.+|+. ..||+|+.++...++.+|..+++.|+.|....
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--------CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 458999999999999999 9999999999999984 48999999998889999999999999987764
No 89
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.00 E-value=5.1e-07 Score=105.75 Aligned_cols=365 Identities=12% Similarity=0.084 Sum_probs=234.3
Q ss_pred hHHHHHHhcC---CCHHHH-HHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh
Q 002999 242 TKSVIHSLIG---NSEKEK-EYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV 317 (859)
Q Consensus 242 i~~Lv~lL~~---~~~~~~-~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~ 317 (859)
+..+-..+++ .+...+ +....++..+..+.+ ...+....++++. +.+...++-+--++.+++..+...
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d-------~s~~~~~vvkl~~-s~~~~~Krl~YL~l~~~~~~~~e~ 108 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD-------IDFGHMEAVNLLS-SNRYTEKQIGYLFISVLVNSNSEL 108 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC-------CCSCHHHHHHGGG-CSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC-------CchhHHHHHHHhc-CCCHHHHHHHHHHHHHHccCCcHH
Confidence 3344444443 244433 444455555554443 1346778888888 899999999999999988654322
Q ss_pred HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHh--C--ChhHHHHHHHHHHHhhCCC
Q 002999 318 QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELL--S--KPAGRAASLKALYNLSGLD 393 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL--~--~~~~~~~a~~aL~~Ls~~~ 393 (859)
..+ ++..+.+=|.+.++-++..|.++|+++.. ..+.+.-.+.+.++| . ++.+++.|+-++.++....
T Consensus 109 ~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~-----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 109 IRL----INNAIKNDLASRNPTFMGLALHCIANVGS-----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCC-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC
Confidence 212 35567777788999999999999999864 225555668888888 6 8999999999999998744
Q ss_pred cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCC-----
Q 002999 394 DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGV----- 468 (859)
Q Consensus 394 ~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~----- 468 (859)
+. .+...+.++.|.++|. +.++.++..|+.+|..++...+..-. -.-...+..|-+++..+
T Consensus 180 p~--~~~~~~~~~~l~~lL~---d~d~~V~~~a~~~l~~i~~~~~~~~~---------~~~~~~~~~L~~ll~~~~~~~~ 245 (621)
T 2vgl_A 180 PD--LVPMGDWTSRVVHLLN---DQHLGVVTAATSLITTLAQKNPEEFK---------TSVSLAVSRLSRIVTSASTDLQ 245 (621)
T ss_dssp GG--GCCCCSCHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHCHHHHT---------THHHHHHHHHHHHHHCCSSSCS
T ss_pred hh--hcCchhHHHHHHHHhC---CCCccHHHHHHHHHHHHHHhChHHHH---------HHHHHHHHHHHHHHhCCCCCcc
Confidence 32 1222488999999994 36679999999999999875532100 00122333333444222
Q ss_pred --------ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhh---------cCCCh--hHHHHHHHHHHHHh
Q 002999 469 --------SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFL---------EHPEV--EHRTYAFRLTRILS 529 (859)
Q Consensus 469 --------~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL---------~~~~~--~v~~~A~~~L~~Ls 529 (859)
+|-.|...+..|..++..+.. +..+.+.+ .+..++..+ ++.+. .+...|++++..+.
T Consensus 246 ~~~~~~~~~~w~qi~il~ll~~~~~~~d~--~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~ 321 (621)
T 2vgl_A 246 DYTYYFVPAPWLSVKLLRLLQCYPPPEDP--AVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD 321 (621)
T ss_dssp TTEETTEESHHHHHHHHHHGGGSSSCSSH--HHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhcCCCCchHHHHHHHHHHHhCCCCCH--HHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC
Confidence 567889999999999864321 22222221 233333322 12232 67788888888884
Q ss_pred hhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHh-hhcccccCCCC
Q 002999 530 ERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQ-THKSSFNTRSS 608 (859)
Q Consensus 530 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~-~~~~~~~~r~~ 608 (859)
.+.+... .++..|..+|.+++. +++..|+..|..+....+....+ ......++.+|. +.
T Consensus 322 --~~~~~~~-----~~~~~L~~~L~~~~~--niry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~--------- 381 (621)
T 2vgl_A 322 --SEPNLLV-----RACNQLGQFLQHRET--NLRYLALESMCTLASSEFSHEAV--KTHIETVINALKTER--------- 381 (621)
T ss_dssp --CCHHHHH-----HHHHHHHHHSSCSCH--HHHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCC---------
T ss_pred --CcHHHHH-----HHHHHHHHHhcCCCc--chHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCC---------
Confidence 2333222 467789999987775 89999999999998765321112 123455556665 31
Q ss_pred CCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 609 RPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 609 ~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
...+...++.+|..++ ++.+... ++.-|.+.+... +.+.+..+..+++.++..
T Consensus 382 --d~~Ir~~aL~lL~~l~---~~~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 382 --DVSVRQRAVDLLYAMC---DRSNAQQ-----IVAEMLSYLETA-DYSIREEIVLKVAILAEK 434 (621)
T ss_dssp --CHHHHHHHHHHHHHHC---CHHHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHH
T ss_pred --CHhHHHHHHHHHHHHc---ChhhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHh
Confidence 1235666777777776 3444333 356677778775 899999999999988753
No 90
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.8e-10 Score=92.68 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=49.9
Q ss_pred CcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchh
Q 002999 75 KNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNI 135 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~ 135 (859)
+++.||||.+.|.|||++ +|||+|++.||.+|+.. ..+||+++.++...++.+|.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY------SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH------CSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc------CCcCCCcCcccCcccccccC
Confidence 569999999999999987 99999999999999987 67999999999888877663
No 91
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=6.3e-11 Score=106.46 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=60.6
Q ss_pred CCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC-------CCCcchhhhHhHHHHH
Q 002999 72 LPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS-------LELKPNIGLAGAIEEW 144 (859)
Q Consensus 72 ~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~-------~~l~pn~~l~~~I~~w 144 (859)
+..++|.||||.+.|.+||+++|||+||+.||.+|+.. + ...||+|+.++.. ..+.+|..|.+.|++|
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK----A-SLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT----T-TSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH----C-cCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 33467999999999999999999999999999999975 3 5789999998863 6677888999999888
Q ss_pred HHh
Q 002999 145 VNR 147 (859)
Q Consensus 145 ~~~ 147 (859)
...
T Consensus 86 ~p~ 88 (115)
T 3l11_A 86 YPR 88 (115)
T ss_dssp SHH
T ss_pred CCH
Confidence 643
No 92
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=2.5e-10 Score=109.70 Aligned_cols=69 Identities=19% Similarity=0.405 Sum_probs=59.4
Q ss_pred CcccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC-CCCcchhhhHhHHHHHHHhc
Q 002999 75 KNFLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS-LELKPNIGLAGAIEEWVNRN 148 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~-~~l~pn~~l~~~I~~w~~~~ 148 (859)
+++.||||.+.|.|||++ +|||+||+.||.+|+.. + +.+||+|+.++.. ..+.||..+++.|..|....
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS----G-NKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT----T-CCBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh----C-cCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence 568999999999999987 99999999999999986 3 5789999999854 67999999999999986543
No 93
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=6e-10 Score=88.94 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=46.7
Q ss_pred CCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCC
Q 002999 73 PFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLEL 131 (859)
Q Consensus 73 ~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l 131 (859)
..+++.||||.+.|++||+++|||+|++.||.+|+.. + ..+||+++.++...++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS----S-SPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT----S-SCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh----C-cCCCCCCCcCCChhhc
Confidence 3467999999999999999999999999999999964 2 5799999998876543
No 94
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.4e-09 Score=88.89 Aligned_cols=55 Identities=16% Similarity=0.385 Sum_probs=46.9
Q ss_pred CCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCC
Q 002999 74 FKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLEL 131 (859)
Q Consensus 74 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l 131 (859)
.+++.||||.+.|.+||+++|||+|++.||.+|+.. .+....||+|++++...++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET---SCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSS---SCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHc---CCCCCCCCCCCCcCCcccC
Confidence 356999999999999999999999999999999973 1226799999998876554
No 95
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.86 E-value=9.7e-10 Score=89.25 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=50.7
Q ss_pred CCCcccCcccccccCCC-------eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchh
Q 002999 73 PFKNFLCPLTKQVMKEP-------VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNI 135 (859)
Q Consensus 73 ~~~~~~cpi~~~~m~dP-------v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~ 135 (859)
+.+++.||||.+.|.+| ++++|||+|++.||.+|+.. +.+||++|.++...++.+++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH------CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc------CCCCCCCCCccChhheeecc
Confidence 33679999999999999 88999999999999999987 57999999999888887753
No 96
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.6e-09 Score=86.22 Aligned_cols=55 Identities=22% Similarity=0.461 Sum_probs=48.4
Q ss_pred CcccCccccc-ccCCC----eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcch
Q 002999 75 KNFLCPLTKQ-VMKEP----VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPN 134 (859)
Q Consensus 75 ~~~~cpi~~~-~m~dP----v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn 134 (859)
+++.||||.+ .+.+| |+++|||+|++.||.+|+.+ + ...||+++.++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G-AGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T-SSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C-CCcCCCCCCccccccceee
Confidence 4688999999 99999 57899999999999999876 3 5789999999988888775
No 97
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=5.6e-10 Score=103.45 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=53.2
Q ss_pred CCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC---------CCCcchhhhHhHHH
Q 002999 72 LPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS---------LELKPNIGLAGAIE 142 (859)
Q Consensus 72 ~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~---------~~l~pn~~l~~~I~ 142 (859)
+..++|.||||.++|.|||.++|||+||+.||.+|+.. + ..+||+|+.++.. ..+.|+..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS----G-PQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG----S-CEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc----C-CCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 34477999999999999999999999999999999976 3 4689999986532 24456666666665
Q ss_pred H
Q 002999 143 E 143 (859)
Q Consensus 143 ~ 143 (859)
+
T Consensus 102 ~ 102 (141)
T 3knv_A 102 S 102 (141)
T ss_dssp T
T ss_pred c
Confidence 3
No 98
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.81 E-value=1.9e-09 Score=96.92 Aligned_cols=65 Identities=14% Similarity=0.259 Sum_probs=53.3
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcc-hhhhHhHHHHH
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKP-NIGLAGAIEEW 144 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~p-n~~l~~~I~~w 144 (859)
++|.||||.++|.|||+++|||+|++.||.+|+.. + ..+||+++.++...++.+ +..+.+.|..+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKV----M-GSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----T-CSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhH----C-cCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 46899999999999999999999999999999987 2 468999999998777654 44455555443
No 99
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.7e-09 Score=83.45 Aligned_cols=45 Identities=20% Similarity=0.473 Sum_probs=39.8
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVT 122 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t 122 (859)
+++.|||+.+.|.|||+++|||+|++.||.+|+.. .+...+||++
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc---CCCCCcCcCC
Confidence 56999999999999999999999999999999985 1236789975
No 100
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.80 E-value=1.6e-09 Score=104.59 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=60.6
Q ss_pred CCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHHHHH
Q 002999 72 LPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIEEWV 145 (859)
Q Consensus 72 ~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~~w~ 145 (859)
+..++|.||||+++|.|||.++|||+||+.||.+|+.. + ..+||.++.++...++.||..+++.|.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~----~-~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRD----A-GHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----H-CSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHh----C-CCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 34477999999999999999999999999999999987 2 359999999998888999988888887653
No 101
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2e-09 Score=87.32 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=45.5
Q ss_pred CCCCcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 72 LPFKNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 72 ~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
+..+++.||||++.|.+||+++|||+|++.||.+|+.. ..+||++|.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL------GKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC------SSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC------CCcCcCcCchhCH
Confidence 34467999999999999999999999999999999976 5799999998754
No 102
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.75 E-value=2.3e-09 Score=85.01 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=48.3
Q ss_pred CcccCcccccccCCC-------eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcch
Q 002999 75 KNFLCPLTKQVMKEP-------VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPN 134 (859)
Q Consensus 75 ~~~~cpi~~~~m~dP-------v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn 134 (859)
+++.|||+.+.+.+| ++++|||+|++.||.+|+.. +.+||+++.++...++.|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH------CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc------CCCCCCCCccCCccceeee
Confidence 358899999999998 78899999999999999987 6799999999988777664
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.68 E-value=5.2e-08 Score=115.73 Aligned_cols=213 Identities=19% Similarity=0.223 Sum_probs=157.9
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHH-HHhcCCCHHHHHHHHHHHHHhccC--hhh
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVI-HSLIGNSEKEKEYAVKLLLEFCID--EAY 273 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~--~~~ 273 (859)
|.++++.|++++. ..|..|+.+|.+|+.++..+..+...|+|..++ .+|.+.+.+++..|+++|++|+.+ ++.
T Consensus 36 i~Pll~~L~S~~~----~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 36 ILPVLKDLKSPDA----KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp THHHHHHHSSSCC----SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHcCCCCH----HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 4567788999988 999999999999999999999999999888765 578888999999999999999865 577
Q ss_pred hhHhhhhhChHHHHHHhhcC------C--C-----C-------hHHHHHHHHHHHHhcC-CCcChHHHHhcCChHHHHHH
Q 002999 274 CKSVASEKGALVLLSSMTGN------L--E-----L-------PALSNLADEVFKKMER-IEEIVQPLAAAGRFEPLINR 332 (859)
Q Consensus 274 ~~~i~~~~g~i~~Lv~lL~~------~--~-----~-------~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i~~Lv~l 332 (859)
+..+.. .|++++|..+|+. . . . ..+..+++.+|++||. +++....+.+.|+++.|+.+
T Consensus 112 ~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 112 CVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 777774 8999999999861 0 0 0 1344567889999995 45556778899999999999
Q ss_pred hcc---CChHHHHHHHHHHHHhcCCCcc-HHHHHHhhH----HHHHHHhC-ChhHHHHHHHHHHHhhCC------CcchH
Q 002999 333 LCQ---GSDNVQIEMAFLVGKLTLTNSC-KEHIARQCA----KVLVELLS-KPAGRAASLKALYNLSGL------DDNAT 397 (859)
Q Consensus 333 L~~---~~~~~~~~aa~~L~~la~~~~~-~~~i~~~gi----~~Lv~lL~-~~~~~~~a~~aL~~Ls~~------~~~~~ 397 (859)
|.+ .+.+++..++.+|..++.++.. ...+.+.+. ..+..+.+ +...+..+++.|+|+... .....
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~~~~~d~s~~~~ 270 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTSLQWMDHSPGKD 270 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHHHTCBTTBCCGG
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhhhhhhhcchhhH
Confidence 843 3578999999999999887654 444444443 23333333 555677889999998421 12333
Q ss_pred HHHHcCcHHHHHHHHhc
Q 002999 398 ILVDSALLPALTDILFK 414 (859)
Q Consensus 398 ~i~~~G~i~~Lv~lL~~ 414 (859)
.+.....++.+...+..
T Consensus 271 ~~~~~~li~~l~~~l~~ 287 (684)
T 4gmo_A 271 GACDAILIPTLTRALEH 287 (684)
T ss_dssp GCSGGGTHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHhh
Confidence 34445566777766653
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.68 E-value=5e-08 Score=115.84 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=142.1
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHH-HHhhcCCCChHHHHHHHHHHHHhcCC--CcC
Q 002999 240 GVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLL-SSMTGNLELPALSNLADEVFKKMERI--EEI 316 (859)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~L-v~lL~~~~~~~~~~~a~~aL~nL~~~--~~~ 316 (859)
..+.+++..|++++++.|..|+.+|.+|+.++..++.+.. .|+|..+ ..+|. +.+.+++..|+++|+||+.. .+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLT-DNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCchH
Confidence 4567788889999999999999999999998888777764 6777665 55777 78999999999999999954 567
Q ss_pred hHHHHhcCChHHHHHHhccCC---------------------hHHHHHHHHHHHHhcCCCc-cHHHHHH-hhHHHHHHHh
Q 002999 317 VQPLAAAGRFEPLINRLCQGS---------------------DNVQIEMAFLVGKLTLTNS-CKEHIAR-QCAKVLVELL 373 (859)
Q Consensus 317 ~~~i~~~G~i~~Lv~lL~~~~---------------------~~~~~~aa~~L~~la~~~~-~~~~i~~-~gi~~Lv~lL 373 (859)
+..|++.|++++|..+|.... .++..++..+|++|+...+ ....+.. ++++.|+.+|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 788999999999999985311 1233456678888886543 3445544 5578898887
Q ss_pred C-----ChhHHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 374 S-----KPAGRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 374 ~-----~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
. ..+++..|+.+|++|+... +....+.+.|....+..++.... .....+..++++|.|+..
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 5 4679999999999999987 44566777665433222222111 112346788999999853
No 105
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=85.78 Aligned_cols=60 Identities=18% Similarity=0.421 Sum_probs=48.9
Q ss_pred CcccCcccccccCC----CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC---CCcchhhh
Q 002999 75 KNFLCPLTKQVMKE----PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL---ELKPNIGL 137 (859)
Q Consensus 75 ~~~~cpi~~~~m~d----Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~---~l~pn~~l 137 (859)
+++.||||.+.|.+ |++++|||+|++.||.+|+... +...+||+|++++... .+.+|+.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~~~i~~l~~n~~~ 80 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---INGVRCPFCSKITRITSLTQLTDNLTV 80 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---SSCBCCTTTCCCBCCSSTTTSEECTTT
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---CCCcCCCCCCCcccchhHHHHHHHHHH
Confidence 56999999999999 9999999999999999999872 2247999999987553 44555443
No 106
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=2.2e-08 Score=77.45 Aligned_cols=45 Identities=31% Similarity=0.679 Sum_probs=39.0
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVT 122 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t 122 (859)
+++.|||+.+.+.+||+++|||+|++.||.+|+... +...+||++
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL---ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS---CCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc---CCCCCCCCC
Confidence 569999999999999999999999999999998641 226789975
No 107
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.6e-08 Score=81.43 Aligned_cols=47 Identities=17% Similarity=0.351 Sum_probs=43.3
Q ss_pred CcccCcccccccCCC-------eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 75 KNFLCPLTKQVMKEP-------VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 75 ~~~~cpi~~~~m~dP-------v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||++|+++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCCCCCccC
Confidence 568999999999998 88999999999999999987 679999998875
No 108
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.58 E-value=1.8e-08 Score=83.26 Aligned_cols=55 Identities=22% Similarity=0.420 Sum_probs=47.4
Q ss_pred CcccCcccccccCCCe---ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchh
Q 002999 75 KNFLCPLTKQVMKEPV---VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNI 135 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv---~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~ 135 (859)
+++.||||++.|.+|. +++|||+|++.||.+|+.. +.+||+||.++...++.+|.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ------HDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT------TCSCTTTCCCCCCSCSCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc------CCcCcCcCCccCCcccCCCC
Confidence 4588999999999773 5699999999999999976 57999999999887776653
No 109
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.48 E-value=6.3e-08 Score=77.61 Aligned_cols=47 Identities=23% Similarity=0.474 Sum_probs=42.1
Q ss_pred cccCcccccccCCC-eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 76 NFLCPLTKQVMKEP-VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 76 ~~~cpi~~~~m~dP-v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
+..||||.+.+.+| ++++|||+|++.||.+|+.. +.+||+++.++..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ------NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH------SCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC------cCcCcCCChhhHh
Confidence 46799999999998 67899999999999999987 5799999988753
No 110
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.45 E-value=1.1e-07 Score=77.91 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=43.3
Q ss_pred CcccCccccccc--CCCeecC--CCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCC
Q 002999 75 KNFLCPLTKQVM--KEPVVLE--SAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLEL 131 (859)
Q Consensus 75 ~~~~cpi~~~~m--~dPv~~~--~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l 131 (859)
+++.||||.+.+ .||++.+ |||+||+.||.++|.. + ...||.||+++....+
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~-~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E-NGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S-CSBCTTTCCBCSSCSS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C-CCCCCCCCCccCCCch
Confidence 569999999999 4677776 9999999999999965 3 5799999998866443
No 111
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.43 E-value=1e-07 Score=72.72 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=41.5
Q ss_pred CcccCcccccccCC----CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 75 KNFLCPLTKQVMKE----PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 75 ~~~~cpi~~~~m~d----Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+++.|||+.+.+.+ |++++|||+|++.||.+|+.. ..+||+++.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE------GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH------TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc------CCcCCCCCCcCC
Confidence 34789999999977 778899999999999999998 589999998764
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.41 E-value=6.4e-08 Score=89.30 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=48.1
Q ss_pred CcccCcccccccCCC-------eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcch
Q 002999 75 KNFLCPLTKQVMKEP-------VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPN 134 (859)
Q Consensus 75 ~~~~cpi~~~~m~dP-------v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn 134 (859)
+++.|||+++.|.+| |+++|||+|++.||.+|+.. +.+||++++++...++.++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT------CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh------CCCCCCCCCcCcccccccc
Confidence 569999999999999 89999999999999999987 5799999999877666554
No 113
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.39 E-value=5.8e-08 Score=74.24 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=39.7
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
+++.|||+.+.+.+|++++|||+|++.||.+| ...||++++++..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---------GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---------SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC---------CCCCCcCCcEeec
Confidence 56899999999999999999999999998862 4689999988754
No 114
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=3e-07 Score=74.96 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=42.8
Q ss_pred CcccCcccccccCCCeec---CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC
Q 002999 75 KNFLCPLTKQVMKEPVVL---ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL 129 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~---~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~ 129 (859)
++..||||++.|.+|..+ +|||+|++.||.+|+.. +.+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV------RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH------CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc------CCcCCCcCcccccc
Confidence 458899999999988754 99999999999999988 56999999987553
No 115
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=6.2e-08 Score=78.17 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=43.9
Q ss_pred CcccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLE 130 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~ 130 (859)
+++.||||.+.+.+ ++++|||+|++.||.+|+.. +.+||++|.++...+
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR------HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC------CSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC------cCcCCCcCCcccCCC
Confidence 56899999999999 99999999999999999975 689999999886543
No 116
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.35 E-value=4.1e-07 Score=73.01 Aligned_cols=48 Identities=10% Similarity=0.419 Sum_probs=41.2
Q ss_pred CcccCcccccccC---CCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 75 KNFLCPLTKQVMK---EPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 75 ~~~~cpi~~~~m~---dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
++..||||++.|. +|++++|||+|++.||.+|+.. +.+||++|.++..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT------NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH------CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc------CCCCcCcCccccC
Confidence 4578999999885 4568899999999999999988 5689999988754
No 117
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.34 E-value=2.1e-07 Score=79.21 Aligned_cols=47 Identities=17% Similarity=0.520 Sum_probs=42.0
Q ss_pred CcccCcccccccCC---CeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 75 KNFLCPLTKQVMKE---PVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 75 ~~~~cpi~~~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
++..||||++.|.+ +++++|||.|++.||.+|+.. +.+||+||.++.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK------SGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT------TCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc------CCcCcCcCccCC
Confidence 45789999999988 788999999999999999976 679999998774
No 118
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=2.3e-07 Score=75.84 Aligned_cols=48 Identities=19% Similarity=0.443 Sum_probs=42.6
Q ss_pred CcccCcccccccCCC---eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 75 KNFLCPLTKQVMKEP---VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 75 ~~~~cpi~~~~m~dP---v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
++..||||++.+.+| +.++|||.|++.||.+|+.. +.+||+||+++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA------NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc------CCcCcCcCCcCCC
Confidence 457899999999988 67899999999999999987 6799999988753
No 119
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.31 E-value=1.8e-07 Score=86.06 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=76.1
Q ss_pred CchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcccc
Q 002999 727 CIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGH 806 (859)
Q Consensus 727 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~ 806 (859)
.++.|+.+|+++++.|+..|+.+|+++... .+++.|.+++. ++++.++..|+++|.++-
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~---------------~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~----- 101 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQDE---------------RAVEPLIKLLE-DDSGFVRSGAARSLEQIG----- 101 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCSH---------------HHHHHHHHHHH-HCCTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHc-CCCHHHHHHHHHHHHHhC-----
Confidence 378999999999999999999999998722 24788999998 499999999999999984
Q ss_pred ccccccchhhHHHHHHHhhcCChhhHHHHHHHHHHH
Q 002999 807 SHRYSLNQSLVRALVEAFKHGNANAKRHAQEALTNL 842 (859)
Q Consensus 807 ~~~~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L~~L 842 (859)
+...+..|+.++++.|+.+|..|..+|.++
T Consensus 102 ------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 102 ------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 233468999999999999999999998753
No 120
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.30 E-value=2e-07 Score=71.03 Aligned_cols=46 Identities=13% Similarity=0.496 Sum_probs=40.6
Q ss_pred CcccCcccccccCC---CeecC-CCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 75 KNFLCPLTKQVMKE---PVVLE-SAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 75 ~~~~cpi~~~~m~d---Pv~~~-~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
++..|||+.+.|.+ |+.++ |||.|++.||.+|+.. +.+||++|.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~------~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS------HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT------CCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc------CCcCcCCCCEe
Confidence 34779999999998 78887 9999999999999976 67999999875
No 121
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.28 E-value=0.00024 Score=84.42 Aligned_cols=253 Identities=11% Similarity=0.024 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCC--------HHHHHHHHHHHHHhccChhhhhHhhhhhChHH
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNS--------EKEKEYAVKLLLEFCIDEAYCKSVASEKGALV 285 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~--------~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~ 285 (859)
.++..|+-+|+.+..+-.+ .++..|...|.+++ ..++..|+-.|.-...... ...+++
T Consensus 410 ~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e 475 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYE 475 (963)
T ss_dssp HHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHH
Confidence 7788888888877655321 14677777776654 4566677777776543321 123677
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh-ccCChHHHHHHHHHHHHhcCCCccHHHHHHh
Q 002999 286 LLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL-CQGSDNVQIEMAFLVGKLTLTNSCKEHIARQ 364 (859)
Q Consensus 286 ~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL-~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~ 364 (859)
.|..+|. .++..+...|+.+|.-+-....|.. ++..|+..+ .+.++.++..++..|+.+...+ +.
T Consensus 476 ~L~~~L~-dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~-------~e 541 (963)
T 4ady_A 476 ALKEVLY-NDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGR-------QE 541 (963)
T ss_dssp HHHHHHH-TCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-------GG
T ss_pred HHHHHHh-cCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC-------hH
Confidence 8888888 5565666677777776644433333 345566655 4557888888999999776544 23
Q ss_pred hHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCccc
Q 002999 365 CAKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWE 441 (859)
Q Consensus 365 gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 441 (859)
.++.+++.|. ++-++..++.++.--.....|.. +|+.|+..+.+ +....++..|+..|..+....+
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~--- 610 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDY--- 610 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSC---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCH---
Confidence 4677788776 67777777777665554555543 35677777765 3556899999999998765432
Q ss_pred ccccccccCcccccchHHHHHHhh-cCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHH
Q 002999 442 LASADKLGHSMQSESIVSSLLGLL-SGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTY 520 (859)
Q Consensus 442 ~~~~~~~~~~l~~~~~i~~Ll~LL-~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 520 (859)
..++.++.+| .+.++.++..++.+|..++.+.... . ++..|..++.+++..||..
T Consensus 611 --------------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-~---------aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 611 --------------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-S---------AIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp --------------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-H---------HHHHHHHHHTCSSHHHHHH
T ss_pred --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-H---------HHHHHHHHccCCCHHHHHH
Confidence 2466777644 5688999999999999998764431 1 3678888899999999999
Q ss_pred HHHHHHHHh
Q 002999 521 AFRLTRILS 529 (859)
Q Consensus 521 A~~~L~~Ls 529 (859)
|+.+|..+.
T Consensus 667 Ai~ALG~Ig 675 (963)
T 4ady_A 667 AMIALSMIL 675 (963)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999999986
No 122
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.16 E-value=1e-06 Score=78.57 Aligned_cols=52 Identities=8% Similarity=0.144 Sum_probs=42.0
Q ss_pred cccCcccccccCCCe------------------ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 76 NFLCPLTKQVMKEPV------------------VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv------------------~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
+..||||++.|.+|+ +++|||.|++.||.+|+..... ..+.+||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~-~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-DGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-SSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC-CCCCcCCCCCCccCC
Confidence 468999999999886 7899999999999999964211 125799999988754
No 123
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.14 E-value=0.0003 Score=76.79 Aligned_cols=321 Identities=12% Similarity=0.149 Sum_probs=196.1
Q ss_pred hcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc---hHHHH-HhhC-chHHHHH-HhcCCCHHHHHHHHHHHHH
Q 002999 193 NAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE---SKKIM-LEEG-VTKSVIH-SLIGNSEKEKEYAVKLLLE 266 (859)
Q Consensus 193 ~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~---~r~~i-~~~g-~i~~Lv~-lL~~~~~~~~~~A~~~L~~ 266 (859)
...++..++.+|+....+ ++....+..+..+..++. .+..+ .+.. ....+.. .+.+++.-....+..++..
T Consensus 75 ~~~~~~~~l~lL~~~~~~---d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~l 151 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNE---DCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSL 151 (480)
T ss_dssp SSTTHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhcChH---HHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHH
Confidence 345678899999865431 788888888888777643 33333 2222 2222332 3334444444555555555
Q ss_pred hccChhhhhHhhhhhChHHH------HHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcC--ChHHHHHHhcc---
Q 002999 267 FCIDEAYCKSVASEKGALVL------LSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAG--RFEPLINRLCQ--- 335 (859)
Q Consensus 267 Ls~~~~~~~~i~~~~g~i~~------Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G--~i~~Lv~lL~~--- 335 (859)
++..... +...++. +...|.+..+...+.-++.+|..|...++.|..+.+.+ .+|+++.++..
T Consensus 152 l~~~~~~------~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~ 225 (480)
T 1ho8_A 152 LVQNGLH------NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATD 225 (480)
T ss_dssp HTSTTTC------CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HhccCCc------cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhc
Confidence 5432111 1112333 34445522344556678999999999999999888653 47777765531
Q ss_pred ------------C--ChHHHHHHHHHHHHhcCCCccHHHHHHhhH---HHHHHHhC---ChhHHHHHHHHHHHhhCCC-c
Q 002999 336 ------------G--SDNVQIEMAFLVGKLTLTNSCKEHIARQCA---KVLVELLS---KPAGRAASLKALYNLSGLD-D 394 (859)
Q Consensus 336 ------------~--~~~~~~~aa~~L~~la~~~~~~~~i~~~gi---~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~-~ 394 (859)
+ ...++.++.-+++-|+.+++....+...++ +.|+.+++ .+.+.+.++.+|.||.... .
T Consensus 226 ~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 226 SQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp -------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred cccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 1 245678888999999998876666665543 56777777 6789999999999998865 2
Q ss_pred ch----H-HHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-----------------CCCccccccccc-----
Q 002999 395 NA----T-ILVDSALLPALTDILFKSHDASPELKELAAATIANVVS-----------------NPGCWELASADK----- 447 (859)
Q Consensus 395 ~~----~-~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~-----------------~~~~~~~~~~~~----- 447 (859)
.. . .++..++ ++++..|....=.++++.+.--.+...|-. +.-.| .|++.
T Consensus 306 ~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W--SP~H~se~FW 382 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW--SPPHVDNGFW 382 (480)
T ss_dssp THHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC--CGGGGCHHHH
T ss_pred hhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc--CCCccchhHH
Confidence 22 2 2333444 567777766333445555544333333311 11111 12221
Q ss_pred --ccCccccc--chHHHHHHhhcC----------CChHHHHHHHHHHHHhccC-ChhHHHHHHHHhhCCCHHHHHHhhcC
Q 002999 448 --LGHSMQSE--SIVSSLLGLLSG----------VSPQCQVSTLRILCGIASS-PQAAESVATHIKSGDGIKYIIQFLEH 512 (859)
Q Consensus 448 --~~~~l~~~--~~i~~Ll~LL~~----------~~~~~~~~a~~aL~~La~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~ 512 (859)
+...+.+. ..+..|+.+|.+ .+|.+..-|+.=+..++++ |.. +..+.+.||=..+..+|.+
T Consensus 383 ~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g----r~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 383 SDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES----IDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp HHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH----HHHHHHHSHHHHHHHHTSC
T ss_pred HHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch----hHHHHHcCcHHHHHHHhcC
Confidence 11223322 477889999973 2456666677777777765 433 3456677888899999999
Q ss_pred CChhHHHHHHHHHHHHh
Q 002999 513 PEVEHRTYAFRLTRILS 529 (859)
Q Consensus 513 ~~~~v~~~A~~~L~~Ls 529 (859)
++++||..|+.++..+.
T Consensus 459 ~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 459 SDSRVKYEALKATQAII 475 (480)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988774
No 124
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.13 E-value=7.5e-07 Score=94.99 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=43.6
Q ss_pred cccCcccccccCCCeecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCC
Q 002999 76 NFLCPLTKQVMKEPVVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSL 129 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~ 129 (859)
...||||.+.+.+||+++|||+||+.||.+|+.. + ..+||+||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~----~-~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES----E-GQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH----T-CSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc----C-CCCCCCCCCccCCc
Confidence 3789999999999999999999999999999984 2 57999999987653
No 125
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.10 E-value=6e-07 Score=76.95 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=49.7
Q ss_pred CcccCcccccccCCCeec---CCCchhcHHHHHHHHHhcccCC--CCCCCCC--CCcc--cCCCCCcchhhhHhHHHHHH
Q 002999 75 KNFLCPLTKQVMKEPVVL---ESAQAYERKAIEYWFERCLEDG--RDPTCPV--TGQV--LKSLELKPNIGLAGAIEEWV 145 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~---~~g~t~~r~~I~~~~~~~~~~~--~~~~cP~--t~~~--l~~~~l~pn~~l~~~I~~w~ 145 (859)
+.|.||||.+.+.+|+++ +|||+||+.||.+||......| ....||. |+.. +....+ .+....+.++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 458999999999999865 7999999999999998643233 2458999 8776 433221 2223345556665
Q ss_pred H
Q 002999 146 N 146 (859)
Q Consensus 146 ~ 146 (859)
+
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.10 E-value=0.00052 Score=81.54 Aligned_cols=270 Identities=15% Similarity=0.006 Sum_probs=180.4
Q ss_pred chHHHHHHhc---CCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCC-------ChHHHHHHHHHHHHh
Q 002999 241 VTKSVIHSLI---GNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLE-------LPALSNLADEVFKKM 310 (859)
Q Consensus 241 ~i~~Lv~lL~---~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-------~~~~~~~a~~aL~nL 310 (859)
++..|-..|. ++++.++.-|+..|.-+...... .++..|...|.+.. .+.++..|+..|.-.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3455555555 45667777777777777554321 15667777776221 255667777777766
Q ss_pred cCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHH
Q 002999 311 ERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRAASLKALY 387 (859)
Q Consensus 311 ~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~ 387 (859)
.....+. .+++.|..+|.+.+..++..++.+|+.+-.+..|... +..|++.+. +..+++.++.+|.
T Consensus 465 ~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a-----i~~LL~~~~e~~~e~vrR~aalgLG 533 (963)
T 4ady_A 465 AMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA-----IHDMFTYSQETQHGNITRGLAVGLA 533 (963)
T ss_dssp STTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH-----HHHHHHHHhccCcHHHHHHHHHHHH
Confidence 5433322 2466788888877776777788888876554444332 345555443 7788899999999
Q ss_pred HhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhc-
Q 002999 388 NLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLS- 466 (859)
Q Consensus 388 ~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~- 466 (859)
-+....+ ..++.+++.|.. +.++.++..++.++..-..+..+ ..+|+.|++.+.
T Consensus 534 ll~~g~~--------e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn---------------~~aIq~LL~~~~~ 588 (963)
T 4ady_A 534 LINYGRQ--------ELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGN---------------NSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTCG--------GGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCC---------------HHHHHHHHHHHHH
T ss_pred hhhCCCh--------HHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHhcc
Confidence 8866543 346788888875 35567787777777644333322 346787877664
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHH-hhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCc
Q 002999 467 GVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQ-FLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDK 545 (859)
Q Consensus 467 ~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~ 545 (859)
+.+..++..|+.+|..++.... ..++.++. ++++.++.+|..|+.+|+.++...+. ...
T Consensus 589 d~~d~VRraAViaLGlI~~g~~------------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--------~~a 648 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLRDY------------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--------QSA 648 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSC------------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--------HHH
T ss_pred CCcHHHHHHHHHHHHhhccCCH------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--------HHH
Confidence 5567899999999988765532 13456665 45678899999999999999622211 146
Q ss_pred hHHHHHhhccCCCchhHHHHHHHHHHHhcCC
Q 002999 546 LVLFKDKILDNQSANCERSDAACILANIQLS 576 (859)
Q Consensus 546 i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~ 576 (859)
+..|..++.+.+. .|+..|+.+|+.+..+
T Consensus 649 id~L~~L~~D~d~--~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 649 IDVLDPLTKDPVD--FVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHHHHTCSSH--HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCCCH--HHHHHHHHHHHHHhcC
Confidence 7788888888776 9999999999998764
No 127
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.07 E-value=1.7e-06 Score=68.01 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=43.5
Q ss_pred CCCCCcccCcccccccCCCeec--CCCch-hcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 71 ILPFKNFLCPLTKQVMKEPVVL--ESAQA-YERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 71 ~~~~~~~~cpi~~~~m~dPv~~--~~g~t-~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+|..++..|+|+.+-..|+|++ ||||. |+..|+.+|+.. +..||++|+++.
T Consensus 3 l~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~ 56 (64)
T 2vje_A 3 LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR------NKPCPVCRQPIQ 56 (64)
T ss_dssp --CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT------TCCCTTTCCCCC
T ss_pred CCCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc------CCcCCCcCcchh
Confidence 3455667899999999999987 99999 899999999976 578999999874
No 128
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.07 E-value=7.1e-07 Score=72.54 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=39.3
Q ss_pred CcccCcccccccCCCeecCCCch-hcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQA-YERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t-~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
+++.||||.+.+.|||+++|||+ ||+.||.+| ..||++|+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----------ccCCCcCcCccC
Confidence 45889999999999999999999 999999877 389999988753
No 129
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.07 E-value=8e-07 Score=81.81 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=49.2
Q ss_pred CcccCcccccccCCC-------eecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchh
Q 002999 75 KNFLCPLTKQVMKEP-------VVLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNI 135 (859)
Q Consensus 75 ~~~~cpi~~~~m~dP-------v~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~ 135 (859)
+.+.|||+.+.+.+| +.++|||+|+..||.+|+.. +.+||++|.++...++.|++
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH------CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc------CCCCCCCCCcCChhcceeee
Confidence 568899999999998 88999999999999999998 67999999999877777653
No 130
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.04 E-value=0.00027 Score=68.76 Aligned_cols=186 Identities=18% Similarity=0.171 Sum_probs=143.9
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHH
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKMERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKE 359 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~ 359 (859)
.+.+..|..+|. ..|+.++.+++.+|.++-.. +.......=...++.++.++.+.++.+...|.++|..+-.+.+--.
T Consensus 32 e~~l~~L~~LL~-dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAG-EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 457888999998 89999999999999999865 2322333334589999999999999999999999999887654422
Q ss_pred HHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 002999 360 HIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNP 437 (859)
Q Consensus 360 ~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~ 437 (859)
--....+.+|..++. ++-....++..|..|......+. ++..+.+++.+ .+..++..+..+|.|++..+
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl~S---kd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL------VRTYINELVVS---PDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHHTC---SSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHH------HHHHHHHHHhC---CChhHHHHHHHHHHHhhccc
Confidence 222233467777777 88899999999999943333333 45788888843 67899999999999999877
Q ss_pred CcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 002999 438 GCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSP 487 (859)
Q Consensus 438 ~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~ 487 (859)
..... -++++..+-.+|++.++.+++.++.+|-.+.+.+
T Consensus 182 ~D~~i-----------~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 182 ADSGH-----------LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SSCCC-----------GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CCHHH-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 65442 2556666778889999999999999999998875
No 131
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.03 E-value=0.00036 Score=74.57 Aligned_cols=299 Identities=13% Similarity=0.089 Sum_probs=166.5
Q ss_pred HHHHHHHHHHhhCCCcc-hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccch
Q 002999 379 RAASLKALYNLSGLDDN-ATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESI 457 (859)
Q Consensus 379 ~~~a~~aL~~Ls~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~ 457 (859)
+....++|+-+..+..- +..+ ..+....++++.+ .+..+|.-..-.+.+++..++. .+ -+
T Consensus 45 ~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s---~d~~lKrLvYLyl~~~~~~~~e-----------~i---Lv 105 (355)
T 3tjz_B 45 AHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQS---NDPTLRRMCYLTIKEMSCIAED-----------VI---IV 105 (355)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGC---CCHHHHHHHHHHHHHHTTTSSC-----------GG---GG
T ss_pred HHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHH-----------HH---HH
Confidence 34455666666555321 1111 1233455667754 6688999999999888776322 12 35
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHH
Q 002999 458 VSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLA 537 (859)
Q Consensus 458 i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~ 537 (859)
+..|.+=++++++-++..|+++|+++....-. +. ..+.+.+.+.+.++.||..|+-+...|... .++..
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~-----~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v 174 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTML-----QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVV 174 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH-----HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH-----HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHH
Confidence 77788878899999999999999999876432 22 246788889999999999999999888743 34432
Q ss_pred HhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHh
Q 002999 538 YALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEG 617 (859)
Q Consensus 538 ~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~ 617 (859)
+ ++++.+-.++.+.+. .++..|.++|..+..++.. ++..++..+.. +. -...|.+-.
T Consensus 175 ~-----~~~~~l~~ll~d~n~--~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~---~~-----l~~~~~q~~ 231 (355)
T 3tjz_B 175 K-----RWVNEAQEAASSDNI--MVQYHALGLLYHVRKNDRL--------AVSKMISKFTR---HG-----LKSPFAYCM 231 (355)
T ss_dssp H-----TTHHHHHHHTTCSSH--HHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHS---SC-----CSCHHHHHH
T ss_pred H-----HHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhhchH--------HHHHHHHHHhc---CC-----CcChHHHHH
Confidence 2 588899999988876 7889999999999876543 23333333332 11 011233333
Q ss_pred hhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCcccccccccee
Q 002999 618 LLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFIC 697 (859)
Q Consensus 618 ~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (859)
.+..+..+...++++. ....++.|...|++. ++.|..+|+.++..+......
T Consensus 232 llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~---------------------- 283 (355)
T 3tjz_B 232 MIRVASRQLEDEDGSR-----DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK---------------------- 283 (355)
T ss_dssp HHHHHTCC----------------------CCCCCS-SHHHHHHHHHHHTC-----------------------------
T ss_pred HHHHHHHhccccchhh-----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----------------------
Confidence 3444433332211221 245678888899996 999999999999877542110
Q ss_pred cCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHH
Q 002999 698 GKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAV 777 (859)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L 777 (859)
.-..++.+|..+|.+++++++..|+..|..++.. . | ..+.. .-.-+
T Consensus 284 -------------------------~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-~--P----~~v~~--~n~~i 329 (355)
T 3tjz_B 284 -------------------------ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-H--P----SAVTA--CNLDL 329 (355)
T ss_dssp -----------------------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------
T ss_pred -------------------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-C--c----HHHHH--HHHHH
Confidence 0123577888899999999999999999999864 2 2 12222 12335
Q ss_pred HHHhhhcCchhHHHHH
Q 002999 778 VDLFTEVRPGLLQERT 793 (859)
Q Consensus 778 ~~ll~~~~~~~~~~~A 793 (859)
.+++.+ +|..+.-.|
T Consensus 330 e~li~d-~n~sI~t~A 344 (355)
T 3tjz_B 330 ENLVTD-ANRSIATLA 344 (355)
T ss_dssp ----------------
T ss_pred HHHccC-CcHhHHHHH
Confidence 567763 666664444
No 132
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.02 E-value=1.3e-06 Score=80.21 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=88.3
Q ss_pred cCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhh
Q 002999 194 AGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAY 273 (859)
Q Consensus 194 ~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~ 273 (859)
...++.|+.+|++.+. .+|..|+.+|..+... .++.|+.+|+++++.+|..|+.+|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~----~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENK----WVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ----------CCSSCC----CSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred cccHHHHHHHhcCCCH----HHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 3566788888888877 7888888888766321 36889999999899999999999887742
Q ss_pred hhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 002999 274 CKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKL 351 (859)
Q Consensus 274 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~l 351 (859)
..+++.|+.+|. ++++.++..|+.+|.++.. ..+++.|+.+|.+.++.++..++.+|.++
T Consensus 72 -------~~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -------ERAVEPLIKLLE-DDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -------HHHHHHHHHHHH-HCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 346888999998 7888999999999988852 23678899999888888888888887653
No 133
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.01 E-value=0.00042 Score=67.48 Aligned_cols=184 Identities=15% Similarity=0.088 Sum_probs=141.9
Q ss_pred hCchHHHHHHhcCCCHHHHHHHHHHHHHhccC--hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-Cc
Q 002999 239 EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID--EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-EE 315 (859)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-~~ 315 (859)
.+.+..|..+|...++.++.+++.+|.++... ...+..+. ...++.+++++. +.|..+.-.|+.+|..|-.+ +-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALS-QENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCB
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCC
Confidence 34788999999999999999999999998876 44444443 458999999998 89999999999999999754 43
Q ss_pred ChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC
Q 002999 316 IVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLD 393 (859)
Q Consensus 316 ~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~ 393 (859)
....+.. .+..|..++.++++-...+++..|+.+-.....+..+ ..+..++. ++.++.++.++|.+++...
T Consensus 109 ~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~-----~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 109 GSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVR-----TYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp CHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred CHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHH-----HHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 3344433 4567899999999999999999999984444344332 45667777 9999999999999999866
Q ss_pred cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 002999 394 DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNP 437 (859)
Q Consensus 394 ~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~ 437 (859)
.....+ .+++.-+-.+|.+ .++.+++.|+.+|..+.+.+
T Consensus 182 ~D~~i~--~~I~~eI~elL~~---eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 182 ADSGHL--TLILDEIPSLLQN---DNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SSCCCG--GGTTTTHHHHHTC---SCHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHH--HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCc
Confidence 433211 2334455677754 47899999999999998864
No 134
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.99 E-value=0.00016 Score=77.30 Aligned_cols=276 Identities=8% Similarity=-0.002 Sum_probs=155.0
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHH
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPL 320 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i 320 (859)
....+++++.+.+.+.++..--.+.+++..++. .|. ++..|.+=++ ++++-++-.|+.+|+++...+- ..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e--~iL----v~Nsl~kDl~-~~N~~iR~lALRtL~~I~~~~m-~~-- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED--VII----VTSSLTKDMT-GKEDSYRGPAVRALCQITDSTM-LQ-- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC--GGG----GHHHHHHHHH-SSCHHHHHHHHHHHHHHCCTTT-HH--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--HHH----HHHHHHhhcC-CCcHhHHHHHHHHHhcCCCHHH-HH--
Confidence 356778899999999998888888888877432 221 4567777777 7889999999999999964431 11
Q ss_pred HhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHH
Q 002999 321 AAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATI 398 (859)
Q Consensus 321 ~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~ 398 (859)
...+++-+.|.+.++-++..|+-+..+|...... . .+..+..+-+++. ++-++..|+.+|..+...+. .
T Consensus 139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~- 209 (355)
T 3tjz_B 139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--V-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L- 209 (355)
T ss_dssp ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--H-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H-
T ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--H-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H-
Confidence 2345677788899999999999998888754432 2 3456788888888 88899999999999986541 1
Q ss_pred HHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHH
Q 002999 399 LVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLR 478 (859)
Q Consensus 399 i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~ 478 (859)
++..|+.-+....-.++-.+..-+..+..++..++. -.....++.|..+|++.++.+.-.|++
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~------------~~~~~~~~~l~~~L~~~~~aVvyEa~k 272 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG------------SRDSPLFDFIESCLRNKHEMVVYEAAS 272 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------------CCCCCSSHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 345556655431111222233333333333222200 123456777888889999999999999
Q ss_pred HHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCC
Q 002999 479 ILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQS 558 (859)
Q Consensus 479 aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 558 (859)
++..+...+.. .. ..++..|..++.++++++|..|++.|..+....+.- +. ..-..+.+++.+++.
T Consensus 273 ~I~~l~~~~~~---~~-----~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~----v~--~~n~~ie~li~d~n~ 338 (355)
T 3tjz_B 273 AIVNLPGCSAK---EL-----APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA----VT--ACNLDLENLVTDANR 338 (355)
T ss_dssp HHTC-------------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------
T ss_pred HHHhccCCCHH---HH-----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH----HH--HHHHHHHHHccCCcH
Confidence 99998653221 11 246778888999999999999999998887333221 11 244557788888776
Q ss_pred chhHHHHHHH
Q 002999 559 ANCERSDAAC 568 (859)
Q Consensus 559 ~~~~~~~A~~ 568 (859)
.+...|..
T Consensus 339 --sI~t~Ait 346 (355)
T 3tjz_B 339 --SIATLAIT 346 (355)
T ss_dssp ----------
T ss_pred --hHHHHHHH
Confidence 45444443
No 135
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.96 E-value=0.0011 Score=72.32 Aligned_cols=266 Identities=12% Similarity=0.087 Sum_probs=153.7
Q ss_pred HHHhhcCC-ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCC--HHHHHHhhc---------------CC--ChhHHHH
Q 002999 461 LLGLLSGV-SPQCQVSTLRILCGIASSPQAAESVATHIKSGDG--IKYIIQFLE---------------HP--EVEHRTY 520 (859)
Q Consensus 461 Ll~LL~~~-~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~--i~~Lv~lL~---------------~~--~~~v~~~ 520 (859)
++..|... +.+.+..++.+|..|...+. .|..+.+.++ ++.++.++. ++ +..++.+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~----~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~ 247 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPE----YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYH 247 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHH----HHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchh----HHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHH
Confidence 44445542 34556678888888888753 4555555444 455544332 11 2356788
Q ss_pred HHHHHHHHhhhccHHHHHhcCCCCch--HHHHHhhccCCCchhHHHHHHHHHHHhcCCc----HH-HHH-HHHhccHHHH
Q 002999 521 AFRLTRILSERIGQDLAYALKPFDKL--VLFKDKILDNQSANCERSDAACILANIQLSE----EE-VKT-LLEATFIKWI 592 (859)
Q Consensus 521 A~~~L~~Ls~~~~~~~~~~l~~~g~i--~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~----~~-~~~-l~~~g~v~~L 592 (859)
++.+++.|+ ..++..+.+...+.. +.|+.+++.... .++...+..+|.|+...+ .. ... ++..++ +.+
T Consensus 248 ~ll~iWlLS--F~~~~~~~l~~~~i~~~~~L~~i~k~s~K-EKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~ 323 (480)
T 1ho8_A 248 SLLLIWLLT--FNPVFANELVQKYLSDFLDLLKLVKITIK-EKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPT 323 (480)
T ss_dssp HHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHH
T ss_pred HHHHHHHHH--cCHHHHHHHHhcchHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHH
Confidence 999999997 344566777665533 678888887765 467778889999998754 22 232 333333 445
Q ss_pred HHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhh
Q 002999 593 VITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 593 ~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 672 (859)
+..|..-+ ..|+++.+.+... -..|-+-.+.-++.+ ++.+...
T Consensus 324 l~~L~~rk---------------------------~~Dedl~edl~~L--~e~L~~~~~~ltsfD--eY~~El~------ 366 (480)
T 1ho8_A 324 VQSLSERK---------------------------YSDEELRQDISNL--KEILENEYQELTSFD--EYVAELD------ 366 (480)
T ss_dssp HHHHHSSC---------------------------CSSHHHHHHHHHH--HHHHHHHHHTCCHHH--HHHHHHH------
T ss_pred HHHHhhCC---------------------------CCcHHHHHHHHHH--HHHHHHHHHhcccHH--HHHHHHh------
Confidence 55554410 1355555443210 111111111110111 0111000
Q ss_pred cccccccCCCCCCCcc-ccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhcc----------CChh
Q 002999 673 GRSLCAEDTGSPTPRR-FCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAE----------EDTN 741 (859)
Q Consensus 673 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~----------~~~~ 741 (859)
+....|.+++.. .+|+--..-|. ++ .-..+..|+++|++ .|+.
T Consensus 367 ----sG~L~WSP~H~se~FW~ENa~kf~-----------------e~-----~~~llk~L~~iL~~~~~~~~~~~s~d~~ 420 (480)
T 1ho8_A 367 ----SKLLCWSPPHVDNGFWSDNIDEFK-----------------KD-----NYKIFRQLIELLQAKVRNGDVNAKQEKI 420 (480)
T ss_dssp ----HTCCCCCGGGGCHHHHHHHSGGGS-----------------SG-----GGHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred ----cCCcccCCCccchhHHHHHHHHHH-----------------hc-----chHHHHHHHHHHhhhccccccccCCCcc
Confidence 011222222100 00000000010 11 23467899999983 4788
Q ss_pred HHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHh
Q 002999 742 VEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLR 802 (859)
Q Consensus 742 v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~ 802 (859)
+...|+.=|+.++.. . | .|...+.+.||=..+.+++. |+|++++..|..+++++..
T Consensus 421 ~laVAc~Digefvr~-~--P-~gr~i~~~lg~K~~VM~Lm~-h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 421 IIQVALNDITHVVEL-L--P-ESIDVLDKTGGKADIMELLN-HSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHH-C--T-THHHHHHHHSHHHHHHHHTS-CSSHHHHHHHHHHHHHHHH
T ss_pred eEEeecccHHHHHHH-C--c-chhHHHHHcCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 999999999999976 2 3 68889999999888999997 7999999999999999874
No 136
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=3.8e-06 Score=68.43 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=38.6
Q ss_pred CcccCcccccccCCCeecCCCch-hcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQA-YERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t-~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
+++.||||.+.+.|||+++|||+ ||+.|+. . ...||++|+++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~----~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAE----A------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHH----H------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhh----C------CCCCccCCceecC
Confidence 45889999999999999999999 9999995 2 3689999998754
No 137
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=4.1e-06 Score=69.37 Aligned_cols=46 Identities=17% Similarity=0.437 Sum_probs=38.8
Q ss_pred cccCcccccccCC--------------Ceec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 76 NFLCPLTKQVMKE--------------PVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 76 ~~~cpi~~~~m~d--------------Pv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+-.|||+++.|.+ ++++ +|||.|.+.||.+|+.. +.+||++|.++.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ------NNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT------CCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh------CCCCCCcCCCcc
Confidence 4569999999987 4455 59999999999999987 679999998874
No 138
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.85 E-value=6.4e-06 Score=64.40 Aligned_cols=46 Identities=9% Similarity=0.210 Sum_probs=41.5
Q ss_pred cccCcccccccCCCeec--CCCch-hcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 76 NFLCPLTKQVMKEPVVL--ESAQA-YERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~--~~g~t-~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
+..|+|+.+-.+||+++ ||||. |++.|+.+|+.. ...||++|+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA------GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT------TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh------CCcCCCcCchhh
Confidence 46799999999999988 99998 999999999976 579999999874
No 139
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.76 E-value=0.00014 Score=74.10 Aligned_cols=184 Identities=15% Similarity=0.114 Sum_probs=131.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCC-CccHHHHHHhhHHHHHHHh-C--ChhHHHHHHHHHHHhhCCCcchHHHHHcC
Q 002999 328 PLINRLCQGSDNVQIEMAFLVGKLTLT-NSCKEHIARQCAKVLVELL-S--KPAGRAASLKALYNLSGLDDNATILVDSA 403 (859)
Q Consensus 328 ~Lv~lL~~~~~~~~~~aa~~L~~la~~-~~~~~~i~~~gi~~Lv~lL-~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G 403 (859)
.+.+.+.+.+-..|..++..|..+... +.....-....++.|...| + +..++..|+.+|..|+..-...-.-.-..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 478888888999999999999888754 2210000122356777878 3 78899999999999985321110011123
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 002999 404 LLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGI 483 (859)
Q Consensus 404 ~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~L 483 (859)
.+|.|+..+.. ....+++.|..+|.+++.... -...++.|...+++.++.++..++..|..+
T Consensus 99 ilp~ll~~l~d---~~~~vr~~a~~aL~~~~~~~~---------------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 99 CVPSLLEKFKE---KKPNVVTALREAIDAIYASTS---------------LEAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHHGGGC---CCHHHHHHHHHHHHHHHTTSC---------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 67788887753 567999999999999977431 134688899999999999999999999996
Q ss_pred ccC--Ch--hHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHH
Q 002999 484 ASS--PQ--AAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQD 535 (859)
Q Consensus 484 a~~--~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~ 535 (859)
... +. ....+ . ..++.|+.++.++++++|..|..++..+....+.+
T Consensus 161 l~~~~~~~~~~~~l-~-----~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 161 LTRTQPTALNKKLL-K-----LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HTTCCGGGCCHHHH-H-----HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHcCCCCccHHHH-H-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 433 21 11111 1 24789999999999999999999999997555443
No 140
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.75 E-value=0.00046 Score=70.33 Aligned_cols=181 Identities=12% Similarity=0.138 Sum_probs=132.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccC-hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC--CcChHH
Q 002999 243 KSVIHSLIGNSEKEKEYAVKLLLEFCID-EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI--EEIVQP 319 (859)
Q Consensus 243 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~~~~~~ 319 (859)
+.+...+.+.+...|..|+..|..+... +..... .....++.|..++..+.+..++..|+.+|..|+.. +.....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4578888899999999999999988765 321111 11346778888883267889999999999999853 211111
Q ss_pred HHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC-cc-
Q 002999 320 LAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLD-DN- 395 (859)
Q Consensus 320 i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~-~~- 395 (859)
+ ...+|+|+..+.+....++..+..+|.+++..... ...++.|...|+ ++.++..++..|..+.... ..
T Consensus 96 ~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 A--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp H--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 1 23789999999999999999999999998765431 233577888887 8999999999999965442 22
Q ss_pred -hHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 002999 396 -ATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSN 436 (859)
Q Consensus 396 -~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~ 436 (859)
-.... ...+|.|+.+|. +....+|..|..+|..++..
T Consensus 169 ~~~~~l-~~l~p~l~~~l~---D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLL-KLLTTSLVKTLN---EPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHH-HHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHH
Confidence 12222 257888999984 46789999999999988763
No 141
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.73 E-value=1.9e-05 Score=68.58 Aligned_cols=45 Identities=16% Similarity=0.356 Sum_probs=39.0
Q ss_pred cccCcccccccCCC-----------------e-ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 76 NFLCPLTKQVMKEP-----------------V-VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 76 ~~~cpi~~~~m~dP-----------------v-~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
+-.|+||.+.|.+| + .++|||.|.+.||.+|+.. +.+||+||+++
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~~ 99 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREW 99 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT------CSBCSSSCSBC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc------CCcCcCCCCcc
Confidence 35699999999987 3 4699999999999999987 68999999875
No 142
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.63 E-value=0.026 Score=69.70 Aligned_cols=405 Identities=9% Similarity=0.032 Sum_probs=206.7
Q ss_pred CcchhhhHhHHHHHHHhc--ccccHHHHHhhhhcCCCccc-hHHHHHHHHHHHHhcC-----------CcchhHHHhcCc
Q 002999 131 LKPNIGLAGAIEEWVNRN--VEVQVSTVVETLRKENPEVD-GLDKALDIVFKISEEH-----------PSNRYRVRNAGV 196 (859)
Q Consensus 131 l~pn~~l~~~I~~w~~~~--~~~~i~~l~~~L~~~~~~~~-~~~~al~~L~~l~~~~-----------~~~r~~i~~~g~ 196 (859)
+.||...| .++|..+- ...-...+.+.+.+.+.+.. ++ -|+-.|++....+ ++.|..+.
T Consensus 15 ~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~-~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik---- 87 (960)
T 1wa5_C 15 VIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRL-AGALFFKNFIKRKWVDENGNHLLPANNVELIK---- 87 (960)
T ss_dssp TSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHH-HHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH----
T ss_pred cCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH----
Confidence 44555555 44443321 11223445555554433322 33 4666777765431 12233333
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccCh-----
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE----- 271 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~----- 271 (859)
..|+..+.+.+. .+|.....++..++..+--..+ ...++.|+..+++++...+..++.+|..+....
T Consensus 88 -~~ll~~l~~~~~----~ir~~l~~~ia~ia~~d~p~~W---p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 88 -KEIVPLMISLPN----NLQVQIGEAISSIADSDFPDRW---PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp -HHHHHHHHHSCH----HHHHHHHHHHHHHHHHHSTTTC---TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred -HHHHHHHHhCCH----HHHHHHHHHHHHHHHhhCccch---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 245666655555 8899988899888765211111 457899999998888778888999999887632
Q ss_pred --hhhhHhhh-hhChHHHHHHh-------hcCC-CC-------hHHHHHHHHHHHHhcCCCcChHHHHh--cCChHHHHH
Q 002999 272 --AYCKSVAS-EKGALVLLSSM-------TGNL-EL-------PALSNLADEVFKKMERIEEIVQPLAA--AGRFEPLIN 331 (859)
Q Consensus 272 --~~~~~i~~-~~g~i~~Lv~l-------L~~~-~~-------~~~~~~a~~aL~nL~~~~~~~~~i~~--~G~i~~Lv~ 331 (859)
+.+..+.. -....+.++.+ +... .+ ..+...++.+++++...+-. ..+.+ ...++.++.
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 238 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIP-EFFEDNIQVGMGIFHK 238 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCC-HHHHHTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHH
Confidence 11211100 01233433332 4411 12 12233466677766532211 11111 123345555
Q ss_pred HhccCC---------------hHHHHHHHHHHHHhcCCCccHH-HHHHhhHHHHHHHhC-------ChhHHHHHHHHHHH
Q 002999 332 RLCQGS---------------DNVQIEMAFLVGKLTLTNSCKE-HIARQCAKVLVELLS-------KPAGRAASLKALYN 388 (859)
Q Consensus 332 lL~~~~---------------~~~~~~aa~~L~~la~~~~~~~-~i~~~gi~~Lv~lL~-------~~~~~~~a~~aL~~ 388 (859)
+|.... ..++..+..+|..+.......- ......++..++++. +..+...++..+..
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 563311 1355666666666653222110 001122344444442 55677788888888
Q ss_pred hhCCCcchHHHHHcCcHHHHH-----HHHhcc--------------------CCCCHHHHHHHHHHHHHhhcCCCccccc
Q 002999 389 LSGLDDNATILVDSALLPALT-----DILFKS--------------------HDASPELKELAAATIANVVSNPGCWELA 443 (859)
Q Consensus 389 Ls~~~~~~~~i~~~G~i~~Lv-----~lL~~~--------------------~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 443 (859)
++.....+..+.....++.|+ ..|.-. .+.....+..|...|..|+..-+. .
T Consensus 319 ~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~-~-- 395 (960)
T 1wa5_C 319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV-L-- 395 (960)
T ss_dssp HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH-H--
T ss_pred HhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch-h--
Confidence 765433222111112333333 232110 011124566677777777664321 0
Q ss_pred ccccccCcccccchHHHHHHhhc------CCChHHHHHHHHHHHHhccCC---h-hHH------HHHHHHhhCCCHHHHH
Q 002999 444 SADKLGHSMQSESIVSSLLGLLS------GVSPQCQVSTLRILCGIASSP---Q-AAE------SVATHIKSGDGIKYII 507 (859)
Q Consensus 444 ~~~~~~~~l~~~~~i~~Ll~LL~------~~~~~~~~~a~~aL~~La~~~---~-~~~------~~~~~i~~~g~i~~Lv 507 (859)
+ -..+++.+...+. +.+-..++.++.++..++... . ... .+...+ ...++
T Consensus 396 --------v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l-----~~~v~ 461 (960)
T 1wa5_C 396 --------V-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF-----TKEIA 461 (960)
T ss_dssp --------H-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH-----HHHTH
T ss_pred --------H-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH-----HHHhH
Confidence 1 0112222233333 334468888999998887531 0 000 111111 12234
Q ss_pred HhhcCC---ChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 508 QFLEHP---EVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 508 ~lL~~~---~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
..++++ ++.+|..|++++..++....++ .+. ..++.+++.|.+++. .++..|+.+|.++..
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~---~l~--~~l~~l~~~L~d~~~--~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKA---QLI--ELMPILATFLQTDEY--VVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH---HHH--HHHHHHHHHTTCSCH--HHHHHHHHHHHHHTT
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhCCHH---HHH--HHHHHHHHHhCCCCh--hHHHHHHHHHHHHHh
Confidence 445666 7899999999999998543322 122 467788888876654 799999999999876
No 143
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.62 E-value=0.27 Score=60.45 Aligned_cols=540 Identities=10% Similarity=0.055 Sum_probs=271.9
Q ss_pred CcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC------------cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHH
Q 002999 195 GVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD------------EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVK 262 (859)
Q Consensus 195 g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~------------~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~ 262 (859)
|....|+.++.+.+.+ ..+|..|+-.|.+.... ++.|..|.+ .|+..|.+.+..++..++.
T Consensus 35 ~~~~~L~~il~~~~~~--~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~-----~ll~~l~~~~~~ir~~l~~ 107 (960)
T 1wa5_C 35 GFGLTLLHVIASTNLP--LSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK-----EIVPLMISLPNNLQVQIGE 107 (960)
T ss_dssp THHHHHHHHHHCTTSC--HHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH-----HHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH-----HHHHHHHhCCHHHHHHHHH
Confidence 5667788888665332 28899999999887531 233433332 3444444556788888888
Q ss_pred HHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCc-------ChHHHH--hcCChHHHHHHh
Q 002999 263 LLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEE-------IVQPLA--AAGRFEPLINRL 333 (859)
Q Consensus 263 ~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~-------~~~~i~--~~G~i~~Lv~lL 333 (859)
++..++..+-. .. =+..++.|+.+++ ++++..+..++.+|..++..-. .+..+. -....+++++++
T Consensus 108 ~ia~ia~~d~p-~~---Wp~ll~~L~~~l~-s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~ 182 (960)
T 1wa5_C 108 AISSIADSDFP-DR---WPTLLSDLASRLS-NDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLL 182 (960)
T ss_dssp HHHHHHHHHST-TT---CTTHHHHHHTTCC-SSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCc-cc---hhHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 88888765321 11 2668999999998 6777888899999999986321 111111 112355555543
Q ss_pred -------ccCCh---------HHHHHHHHHHHHhcCCCccHHHHH--HhhHHHHHHHhC--C---------------hhH
Q 002999 334 -------CQGSD---------NVQIEMAFLVGKLTLTNSCKEHIA--RQCAKVLVELLS--K---------------PAG 378 (859)
Q Consensus 334 -------~~~~~---------~~~~~aa~~L~~la~~~~~~~~i~--~~gi~~Lv~lL~--~---------------~~~ 378 (859)
.+... ++...+..++..+...+-...... ..-.+.+.++|. . ..+
T Consensus 183 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~v 262 (960)
T 1wa5_C 183 KTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKV 262 (960)
T ss_dssp HHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHH
Confidence 33211 222234555555543222221111 111355556554 1 135
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccc
Q 002999 379 RAASLKALYNLSGLDDNATILVDSALLPALTDILFKS--HDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSES 456 (859)
Q Consensus 379 ~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~ 456 (859)
+..++.+|..+.......-.-.-...++..+.++... ......+...++..+..++.....+. .+....
T Consensus 263 k~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~---------~~~~~~ 333 (960)
T 1wa5_C 263 KSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFE---------IFNNES 333 (960)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHG---------GGCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHH---------HHcCch
Confidence 6677777777764332110000113445555555421 12345777888888887765432222 111123
Q ss_pred hHHHHH-HhhcCCChHHHHHHHHHHHHhccCC--------hhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 002999 457 IVSSLL-GLLSGVSPQCQVSTLRILCGIASSP--------QAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRI 527 (859)
Q Consensus 457 ~i~~Ll-~LL~~~~~~~~~~a~~aL~~La~~~--------~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~ 527 (859)
.++.++ .+ ++-+|+..+ ...+-+++. .. .++....|..|..+|..
T Consensus 334 ~l~~li~~~--------------i~~~m~~~~~d~e~w~~dp~e~i~~d----------~e--~~d~~s~R~aa~~~L~~ 387 (960)
T 1wa5_C 334 AMNNITEQI--------------ILPNVTLREEDVELFEDDPIEYIRRD----------LE--GSDTDTRRRACTDFLKE 387 (960)
T ss_dssp HHHHHHHHT--------------HHHHHSCCGGGTTTTTTCHHHHHHHH----------HH--C----CHHHHHHHHHHH
T ss_pred HHHHHHHHH--------------hHHhcCCCHHHHHHHhcCHHHHHHhc----------cC--cccccCcHHHHHHHHHH
Confidence 333333 11 122222111 011111110 01 12234678888999998
Q ss_pred HhhhccHHHHHhcCCCCchHHHHHhhc------cCCCchhHHHHHHHHHHHhcCCc---H----------HHHHHHHhcc
Q 002999 528 LSERIGQDLAYALKPFDKLVLFKDKIL------DNQSANCERSDAACILANIQLSE---E----------EVKTLLEATF 588 (859)
Q Consensus 528 Ls~~~~~~~~~~l~~~g~i~~Lv~lL~------~~~~~~~~~~~A~~~L~~L~~~~---~----------~~~~l~~~g~ 588 (859)
|+...++.+... .++.+...+. +.+ -..+.+|..+++.++.+. . .+..++..-.
T Consensus 388 l~~~~~~~v~~~-----~l~~i~~~l~~~~~~~~~~--w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v 460 (960)
T 1wa5_C 388 LKEKNEVLVTNI-----FLAHMKGFVDQYMSDPSKN--WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI 460 (960)
T ss_dssp HHHHCHHHHHHH-----HHHHHHHHHHHHHC----C--HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT
T ss_pred HHHHcchhHHHH-----HHHHHHHHHHHhccCcchh--HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh
Confidence 884443332211 2233333444 222 256778888888886421 0 1111111112
Q ss_pred HHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhh
Q 002999 589 IKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKN 668 (859)
Q Consensus 589 v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ 668 (859)
+| .|.+ . .....-+...++.++.+|+..-.++. -..++|.+++.|.++ ++.|+..||+||.+
T Consensus 461 ~p----~l~~---~-----~~~~p~vr~~a~~~lg~~~~~~~~~~-----l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~ 522 (960)
T 1wa5_C 461 AP----DLTS---N-----NIPHIILRVDAIKYIYTFRNQLTKAQ-----LIELMPILATFLQTD-EYVVYTYAAITIEK 522 (960)
T ss_dssp HH----HHHC---S-----SCSCHHHHHHHHHHHHHTGGGSCHHH-----HHHHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred HH----HhcC---C-----CCCCceehHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHhCCC-ChhHHHHHHHHHHH
Confidence 22 2222 1 00122346668888888875433322 224578888999885 89999999999999
Q ss_pred hhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCC-----hhHH
Q 002999 669 LSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEED-----TNVE 743 (859)
Q Consensus 669 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----~~v~ 743 (859)
|......... ..+. +... ...+ + -...+..|.+++.... ....
T Consensus 523 ~~~~~~~~~~--~~~~-------------~~~~---~l~p-----------~---l~~ll~~L~~ll~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 523 ILTIRESNTS--PAFI-------------FHKE---DISN-----------S---TEILLKNLIALILKHGSSPEKLAEN 570 (960)
T ss_dssp HTTCBSCSSS--CCBS-------------SCGG---GTTT-----------T---HHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred HHhccccccc--cccc-------------ccHH---Hhhh-----------h---HHHHHHHHHHHHHhccCCCCccccc
Confidence 8764210000 0000 0000 0000 0 1234556666766641 1133
Q ss_pred HHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhh----cCchhHHHHHHHHHHHHHhcc--ccccccccchhhH
Q 002999 744 IAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTE----VRPGLLQERTVWMLERVLRVE--GHSHRYSLNQSLV 817 (859)
Q Consensus 744 ~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~A~~~l~~~~~~~--~~~~~~~~~~~~~ 817 (859)
+.++.+|..++..-++.+...... -++.|...+.. ..+...+..+..++..+++.. +....+ ...+.
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~-----l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~--~~~~~ 643 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL--VDSMM 643 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH--HHHHH
Confidence 566666666653201112122222 22334444332 234556666777887777641 122222 23344
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhhh
Q 002999 818 RALVEAFKHGNANAKRHAQEALTNLKQI 845 (859)
Q Consensus 818 ~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 845 (859)
+.+...++.........+..++..|...
T Consensus 644 p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 644 PTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 6777778777677888888888877655
No 144
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.60 E-value=0.0077 Score=56.16 Aligned_cols=217 Identities=12% Similarity=0.104 Sum_probs=149.9
Q ss_pred HHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcC-CChHHHHHHHH
Q 002999 400 VDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSG-VSPQCQVSTLR 478 (859)
Q Consensus 400 ~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~-~~~~~~~~a~~ 478 (859)
.+...+..++.+|. ++-+.++.+|+.++.+++..-+.. .+..+..|+-+++. ..-.+-...++
T Consensus 29 ~d~~~l~~lI~~LD---DDlwtV~kNAl~vi~~i~~~~~el-------------~epl~~kL~vm~~ksEaIpltqeIa~ 92 (253)
T 2db0_A 29 YDESVLKKLIELLD---DDLWTVVKNAISIIMVIAKTREDL-------------YEPMLKKLFSLLKKSEAIPLTQEIAK 92 (253)
T ss_dssp HCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTCGGG-------------HHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred hhHHHHHHHHHHhc---cHHHHHHHhHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHhhcccCchHHHHHH
Confidence 34577888999994 466889999999999997755432 24567777777754 44467666777
Q ss_pred HHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCC
Q 002999 479 ILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQS 558 (859)
Q Consensus 479 aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 558 (859)
++.-++.-.. ++.. +.+|.|..=..-++++++.+-..+|..++... +.... +.+.-+..++.+.+.
T Consensus 93 a~G~la~i~P---e~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaran-P~l~~-----~v~rdi~smltskd~ 158 (253)
T 2db0_A 93 AFGQMAKEKP---ELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKAN-PMLMA-----SIVRDFMSMLSSKNR 158 (253)
T ss_dssp HHHHHHHHCH---HHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HHHHH-----HHHHHHHHHTSCSSH
T ss_pred HHhHHHHhCH---HHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhC-hHHHH-----HHHHHHHHHhcCCCh
Confidence 8877776532 2222 24577777778889999999999999998433 33322 455668888887776
Q ss_pred chhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHH
Q 002999 559 ANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVR 638 (859)
Q Consensus 559 ~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~ 638 (859)
..+..|...++.+..+... +
T Consensus 159 --~Dkl~aLnFi~alGen~~~---------------------------------------------y------------- 178 (253)
T 2db0_A 159 --EDKLTALNFIEAMGENSFK---------------------------------------------Y------------- 178 (253)
T ss_dssp --HHHHHHHHHHHTCCTTTHH---------------------------------------------H-------------
T ss_pred --HHHHHHHHHHHHHhccCcc---------------------------------------------c-------------
Confidence 6777777777766652221 0
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCC
Q 002999 639 EQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDS 718 (859)
Q Consensus 639 ~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (859)
-.-.+|.|..||.+. +.-||..|..+|.+++...+.+..
T Consensus 179 v~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRk---------------------------------------- 217 (253)
T 2db0_A 179 VNPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRK---------------------------------------- 217 (253)
T ss_dssp HGGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHH----------------------------------------
T ss_pred cCcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHH----------------------------------------
Confidence 012368888999985 999999999999999876543321
Q ss_pred cchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhh
Q 002999 719 QLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLII 755 (859)
Q Consensus 719 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 755 (859)
+|..-++=+++....|....-.+|+.|+.
T Consensus 218 --------ii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 218 --------VVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp --------HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 24455556677778888888888888774
No 145
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.48 E-value=0.0088 Score=55.78 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=133.6
Q ss_pred hHHHHHHHhCChh--HHHHHHHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCccc
Q 002999 365 CAKVLVELLSKPA--GRAASLKALYNLSGLD-DNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWE 441 (859)
Q Consensus 365 gi~~Lv~lL~~~~--~~~~a~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 441 (859)
.+..++.+|.+.- ++++|+..+.+++..- +-...+ +..|+.+++. +....+.+..+.++..++.-.+...
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~k--sEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKK--SEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHH--CCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhh--cccCchHHHHHHHHhHHHHhCHHHH
Confidence 3577788888443 8999999999998765 334433 4567777765 3556677777788887776543211
Q ss_pred ccccccccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHH
Q 002999 442 LASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYA 521 (859)
Q Consensus 442 ~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 521 (859)
.+.||.+..-.+-+++..+.+...+|-.++..... .. . +.+.-+..++.+++..-+..|
T Consensus 106 -------------~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~-~-----~v~rdi~smltskd~~Dkl~a 164 (253)
T 2db0_A 106 -------------KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LM-A-----SIVRDFMSMLSSKNREDKLTA 164 (253)
T ss_dssp -------------HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HH-H-----HHHHHHHHHTSCSSHHHHHHH
T ss_pred -------------HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HH-H-----HHHHHHHHHhcCCChHHHHHH
Confidence 45567777767889999999999999999876432 11 1 235678889999998888888
Q ss_pred HHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHH
Q 002999 522 FRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKTLL 584 (859)
Q Consensus 522 ~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~ 584 (859)
+..+..+...+. +.+. -.+|.|..+|.+.+. -++..|+-+|.+++.-++.++.++
T Consensus 165 LnFi~alGen~~----~yv~--PfLprL~aLL~D~de--iVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 165 LNFIEAMGENSF----KYVN--PFLPRIINLLHDGDE--IVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp HHHHHTCCTTTH----HHHG--GGHHHHHGGGGCSSH--HHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHhccCc----cccC--cchHHHHHHHcCcch--hhhHHHHHHHHHHHHcCHHHHHHH
Confidence 877777753222 2333 478999999999987 799999999999999888865544
No 146
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.47 E-value=2.1e-05 Score=64.59 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=38.0
Q ss_pred cccCcccccccCCCeecCCCch-hcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 76 NFLCPLTKQVMKEPVVLESAQA-YERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t-~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
+..||||.+.+.|||++||||. ||+.|+.+| ..||++|+++..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----------SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----------CcCCCCCchhhC
Confidence 4679999999999999999999 999998754 389999998754
No 147
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.41 E-value=0.019 Score=69.21 Aligned_cols=296 Identities=12% Similarity=0.090 Sum_probs=189.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcC--hHHHH
Q 002999 244 SVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEI--VQPLA 321 (859)
Q Consensus 244 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~--~~~i~ 321 (859)
.++.-+...+...+..++..|.++...+.....+ ..+.+..|.+.+.+..+. +.|+.++..|+..... ...-.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~ 92 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDV--PEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPY 92 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSC--CHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhcccccccc--chhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccc
Confidence 3455455544455567777777776543211222 146788888888822233 8999999999954321 11111
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHHHhcC-CCccHHHHHHhhHHHHHHHhC-C--hhHHHHHHHHHHHhhCCCcchH
Q 002999 322 AAGRFEPLINRLCQGSDNVQIEMAFLVGKLTL-TNSCKEHIARQCAKVLVELLS-K--PAGRAASLKALYNLSGLDDNAT 397 (859)
Q Consensus 322 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~-~~~~~~~i~~~gi~~Lv~lL~-~--~~~~~~a~~aL~~Ls~~~~~~~ 397 (859)
=.+.+|.++..+.+....++..|..++..+.. -+..- + ...+|.|+..|. + =..+..|+.+|..|+.....+-
T Consensus 93 ~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 93 IVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 12578888888888788888877766665542 11111 1 233588888887 3 4678889999999986543322
Q ss_pred HHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhcCCChHHHHHHH
Q 002999 398 ILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLSGVSPQCQVSTL 477 (859)
Q Consensus 398 ~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~ 477 (859)
...=..+||.+-+.+- +...+++..|..++..+|..-.+..- +..||.|+..+.+++ + ...|+
T Consensus 170 ~~~~~~~~p~~~~~~~---d~k~~v~~~~~~~~~~~~~~~~n~d~------------~~~~~~~~~~~~~p~-~-~~~~~ 232 (986)
T 2iw3_A 170 ALRMPELIPVLSETMW---DTKKEVKAAATAAMTKATETVDNKDI------------ERFIPSLIQCIADPT-E-VPETV 232 (986)
T ss_dssp HHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHGGGCCCTTT------------GGGHHHHHHHHHCTT-H-HHHHH
T ss_pred HHhccchhcchHhhcc---cCcHHHHHHHHHHHHHHHhcCCCcch------------hhhHHHHHHHhcChh-h-hHHHH
Confidence 2222467788888774 45679999999999999987665541 567999999988774 2 33344
Q ss_pred HHHHHhccCCh-hHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhh--ccHHHHHhcCCCCchHHHHHhhc
Q 002999 478 RILCGIASSPQ-AAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSER--IGQDLAYALKPFDKLVLFKDKIL 554 (859)
Q Consensus 478 ~aL~~La~~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~--~~~~~~~~l~~~g~i~~Lv~lL~ 554 (859)
..|..-+.-.. ....+ .. .+|.|.+-|......+++.++-.+-||++- .+.+.+..+- ..+|-|-+...
T Consensus 233 ~~l~~~tfv~~v~~~~l-~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~ 304 (986)
T 2iw3_A 233 HLLGATTFVAEVTPATL-SI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFA 304 (986)
T ss_dssp HHHTTCCCCSCCCHHHH-HH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTT
T ss_pred HHhhcCeeEeeecchhH-HH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhh
Confidence 44444332211 11111 11 257788888888888999999999999842 2233333333 57777777777
Q ss_pred cCCCchhHHHHHHHHHHHh
Q 002999 555 DNQSANCERSDAACILANI 573 (859)
Q Consensus 555 ~~~~~~~~~~~A~~~L~~L 573 (859)
.-.. ++++..|..++..|
T Consensus 305 ~~~~-pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 305 TIAD-PEAREVTLRALKTL 322 (986)
T ss_dssp TCCS-HHHHHHHHHHHHHH
T ss_pred ccCC-HHHHHHHHHHHHHH
Confidence 6666 68888887777766
No 148
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.40 E-value=0.11 Score=64.21 Aligned_cols=534 Identities=10% Similarity=0.042 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhc-CCCHHHHHHHHHHHHHhccC------hhhhhHhhhhhChHHH
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLI-GNSEKEKEYAVKLLLEFCID------EAYCKSVASEKGALVL 286 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~------~~~~~~i~~~~g~i~~ 286 (859)
..|..|-..|..+-..+ ++...+..+|. +.+..+|..|+.+|.+.... ++.+..|- ...+..
T Consensus 22 ~~r~~A~~~L~~~~~~p---------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir--~~ll~~ 90 (971)
T 2x1g_F 22 QNQAITHEWLTDAEASP---------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELK--QKILES 90 (971)
T ss_dssp TC----CHHHHHTTTST---------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHcCH---------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHH--HHHHHH
Confidence 56777777777765554 33445556664 35678899999999987542 23344442 334555
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccC------ChHHHHHHHHHHHHhcCC-----C
Q 002999 287 LSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQG------SDNVQIEMAFLVGKLTLT-----N 355 (859)
Q Consensus 287 Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~------~~~~~~~aa~~L~~la~~-----~ 355 (859)
+...- .+...++...+.+|..+...+--. =.+.++.|+..+.++ ++.....+...|..++.. .
T Consensus 91 l~~~~--~~~~~vr~kl~~~la~i~~~~~p~----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~ 164 (971)
T 2x1g_F 91 IVRFA--GGPKIVLNRLCISLGAYIVHMLGE----WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHT 164 (971)
T ss_dssp HHHHT--TSCHHHHHHHHHHHHHHHHHTTCC----------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhC--CCCHHHHHHHHHHHHHHHHHcccc----ccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCc
Confidence 54443 235678888999999988542211 134778888888764 455666666677766531 1
Q ss_pred -ccHHHHH---HhhHHHHHH----HhC---Ch-------hHHHHHHHHHHHhhC---CCcchHHHHHcCcHHHHHHHHh-
Q 002999 356 -SCKEHIA---RQCAKVLVE----LLS---KP-------AGRAASLKALYNLSG---LDDNATILVDSALLPALTDILF- 413 (859)
Q Consensus 356 -~~~~~i~---~~gi~~Lv~----lL~---~~-------~~~~~a~~aL~~Ls~---~~~~~~~i~~~G~i~~Lv~lL~- 413 (859)
..+..+. ...++.++. +|. ++ .++..++.++..... .+.. .....++.+.. |.
T Consensus 165 ~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~ 239 (971)
T 2x1g_F 165 SVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVH 239 (971)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhh
Confidence 1222221 122344443 443 32 678888888876544 1222 22344555555 31
Q ss_pred ---------c---cCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHh-------hcCCCh---H
Q 002999 414 ---------K---SHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGL-------LSGVSP---Q 471 (859)
Q Consensus 414 ---------~---~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~L-------L~~~~~---~ 471 (859)
. ..+..+.+++.|+.+|..+....+..... .+. ...++.++.+ +...+. +
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~-------~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~ 311 (971)
T 2x1g_F 240 KCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP-------KTA-FVLIKMFLDSLSEITKTEWKRENDNED 311 (971)
T ss_dssp HHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH-------HHH-HHHHHHHHHHHHHHHHHHSSSSCSCSH
T ss_pred hhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH-------HHH-HHHHHHHHHhHHHHHHHHhcccccchH
Confidence 0 00123578999999999998764321100 011 2233444332 233342 6
Q ss_pred HHHHHHHHHHHhccCChhHHHHH-----------HHHhhCCCHHHHHHhhcC-----CChhHHHHHHHHHHHHhhhc-c-
Q 002999 472 CQVSTLRILCGIASSPQAAESVA-----------THIKSGDGIKYIIQFLEH-----PEVEHRTYAFRLTRILSERI-G- 533 (859)
Q Consensus 472 ~~~~a~~aL~~La~~~~~~~~~~-----------~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~~L~~Ls~~~-~- 533 (859)
.....++.+..++..... .+. ..+. ..++.|+.++.+ .++++...++..+..+++.. +
T Consensus 312 ~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 312 IIVHIYMLFVSSVERHST--LLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp HHHHHHHHHHHHHHHTHH--HHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 666677777766543110 011 1111 234455555434 46788888888887776311 0
Q ss_pred ------HHHH---HhcCCCCchHHHHHhhccCCCc------h-------hHHHHHHHHHHHhcCCcHHHHHHHHhccHHH
Q 002999 534 ------QDLA---YALKPFDKLVLFKDKILDNQSA------N-------CERSDAACILANIQLSEEEVKTLLEATFIKW 591 (859)
Q Consensus 534 ------~~~~---~~l~~~g~i~~Lv~lL~~~~~~------~-------~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~ 591 (859)
.... ..+.. ..++.++..+.-+++. . ..+..+..+|..++..-. ...++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-------~~~l~~ 459 (971)
T 2x1g_F 388 SNDEQKHKCWEYIKPLYA-HLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-------DYILEI 459 (971)
T ss_dssp ------CHHHHHHHHHHH-HHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-------THHHHH
T ss_pred ccccchHHHHHHHHHHHH-HHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHH
Confidence 0011 11111 3344455544322210 0 122344444444433111 112222
Q ss_pred HHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhh
Q 002999 592 IVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSE 671 (859)
Q Consensus 592 L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 671 (859)
+...+...-.... .........|+++.++..++..-.......+. .+++.+.++..++.++.+|..++++++.++.
T Consensus 460 ~~~~l~~~l~~~~--~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~--~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 460 LAAMLDEAIADLQ--RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP--RLMRVLAEIPYEKLNVKLLGTALETMGSYCN 535 (971)
T ss_dssp HHHHHHHHHHHHH--HCTTCCHHHHHHHHHHHHTTTC------CHHH--HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH--HHHHHHHhcCccccCHHHHHHHHHHHHHHHH
Confidence 3323222110000 00011224677777777766541111111111 1233333333221378999999999998875
Q ss_pred hcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHH
Q 002999 672 AGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALS 751 (859)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 751 (859)
--.... .+ -...++.|+..| + +.|+..|+.||.
T Consensus 536 ~l~~~~-----------------------------------------~~---l~~vl~~l~~~l-~--~~v~~~A~~al~ 568 (971)
T 2x1g_F 536 WLMENP-----------------------------------------AY---IPPAINLLVRGL-N--SSMSAQATLGLK 568 (971)
T ss_dssp HHC---------------------------------------------C---HHHHHHHHHHHH-H--SSCHHHHHHHHH
T ss_pred HHhcCH-----------------------------------------HH---HHHHHHHHHHHh-C--hHHHHHHHHHHH
Confidence 321100 00 123466777777 2 889999999999
Q ss_pred hhhhccCcchhhHHHHHHhcCChHHHHHHhhhc-CchhHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhh----c
Q 002999 752 TLIIDTSKNFKRGVDELEREGALDAVVDLFTEV-RPGLLQERTVWMLERVLRVEGHSHRYSLNQSLVRALVEAFK----H 826 (859)
Q Consensus 752 ~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~Lv~ll~----~ 826 (859)
+|..+ +. ....... ..-+..+.+++... -+...+..+..++..++..-........-..+..+++..++ .
T Consensus 569 ~l~~~--~~--~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 569 ELCRD--CQ--LQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHH--CH--HHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHH--HH--HhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99965 21 1111111 12333455666521 24677888888888887531111111111223345555443 2
Q ss_pred C--ChhhHHHHHHHHHHHhhh
Q 002999 827 G--NANAKRHAQEALTNLKQI 845 (859)
Q Consensus 827 ~--~~~~~~~A~~~L~~L~~~ 845 (859)
. +...+......|..|+..
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~ 664 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTL 664 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHH
Confidence 2 343455566666666543
No 149
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.00012 Score=58.07 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=38.8
Q ss_pred CcccCcccccccCCCeecCCCch-hcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQA-YERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t-~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
++..|+|+++-..|||++||||. |+..|+. . ...||++|+++..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~----~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK----Y------FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHH----H------CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHh----c------CCCCCCCCcchhc
Confidence 45889999999999999999999 9999988 2 3699999998754
No 150
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.39 E-value=2.2e-05 Score=83.51 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=39.3
Q ss_pred CcccCcccccccCCCeecCCCch-hcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 75 KNFLCPLTKQVMKEPVVLESAQA-YERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~~g~t-~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
+++.||||.+.+.+||++||||+ ||+.|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----------CcCCCCCCCccC
Confidence 46899999999999999999999 999999876 389999988753
No 151
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.00014 Score=59.47 Aligned_cols=55 Identities=9% Similarity=0.258 Sum_probs=43.5
Q ss_pred CcccCccccccc--CCCeecCCC-----chhcHHHHHHHHHhcccCCCCCCCCCCCcccCC-CCCcc
Q 002999 75 KNFLCPLTKQVM--KEPVVLESA-----QAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS-LELKP 133 (859)
Q Consensus 75 ~~~~cpi~~~~m--~dPv~~~~g-----~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~-~~l~p 133 (859)
++-.|+||++-+ .+|+++||+ |.|-+.||.+|+... + ..+||+|+.++.. ..+.|
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~-~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D-TRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C-CSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C-CCCCCCCCCeeecCcccCC
Confidence 446799999877 479999996 999999999999972 2 4699999998854 33444
No 152
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.32 E-value=0.0085 Score=62.27 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=118.3
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHh-cccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhH
Q 002999 198 LLIVKLLKSSSKSVGTILRSKALMALLS-MAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKS 276 (859)
Q Consensus 198 ~~Lv~lL~~~~~~~~~~~~~~al~~L~~-L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 276 (859)
..+++-|.+++. +.++.++..|.. +..|.+.-..++..+++..|++....++...+..++.+|.+|-....--..
T Consensus 121 ~~iiekL~~~~~----~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 121 NAILEKLYSSSG----PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHCCH----HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHhcCCc----HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 345566666666 788999999998 667788888888888899999999999999999999999999877554444
Q ss_pred hhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC-cChHHHHhc--------C--ChHHHHHHhc---cCChHHHH
Q 002999 277 VASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIE-EIVQPLAAA--------G--RFEPLINRLC---QGSDNVQI 342 (859)
Q Consensus 277 i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~-~~~~~i~~~--------G--~i~~Lv~lL~---~~~~~~~~ 342 (859)
+......|.-|..++. +.+..+.+.|+.+|..++... .+...+.++ | -.+.|+.+|. .++.+++.
T Consensus 197 vvs~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hhCCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 4445668999999999 788999999999999998654 344433332 1 3779999997 77889999
Q ss_pred HHHHHHHHhc
Q 002999 343 EMAFLVGKLT 352 (859)
Q Consensus 343 ~aa~~L~~la 352 (859)
++...|-.+-
T Consensus 276 ~amtLIN~lL 285 (339)
T 3dad_A 276 YTVTLINKTL 285 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877665553
No 153
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0027 Score=64.81 Aligned_cols=181 Identities=18% Similarity=0.141 Sum_probs=122.3
Q ss_pred ChhHHHHHHHHHHH-hhCC-CcchHHHHH-cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCC--ccccccccccc
Q 002999 375 KPAGRAASLKALYN-LSGL-DDNATILVD-SALLPALTDILFKSHDASPELKELAAATIANVVSNPG--CWELASADKLG 449 (859)
Q Consensus 375 ~~~~~~~a~~aL~~-Ls~~-~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~~~~~~ 449 (859)
+-.-+..|+..|.. +... +.....-.+ ...+..|...|.. +.+..++..|+.+|..|+.+-. ....
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~--D~n~~v~~~A~~al~~la~~l~~~~f~~------- 99 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK--DANIQAVALAAQSVELICDKLKTPGFSK------- 99 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHHCTTTSCH-------
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcccccccH-------
Confidence 55667788888888 7632 221100001 1235667777732 4567899999999999985432 1110
Q ss_pred CcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-hHHH--HHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHH
Q 002999 450 HSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQ-AAES--VATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTR 526 (859)
Q Consensus 450 ~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~-~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~ 526 (859)
-.....++.++..+.+..+.+++.+..+|-.++..-. .... + . ..++.|...|++.++.+|..++.+|.
T Consensus 100 --~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l-~-----~ll~~l~~~l~~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 100 --DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN-E-----DMLKDILEHMKHKTPQIRMECTQLFN 171 (249)
T ss_dssp --HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT-H-----HHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH-H-----HHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 0123478899999999889999988888877765321 0000 0 0 13678888999999999999999999
Q ss_pred HHhhhcc---HHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcC
Q 002999 527 ILSERIG---QDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQL 575 (859)
Q Consensus 527 ~Ls~~~~---~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 575 (859)
.+..... ......+.. ..++.|.+++.+.+. +++..|..+|+.+..
T Consensus 172 ~~~~~~~~~~~~l~~~l~~-~iip~l~~~l~D~~~--~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKD-EVVPIVIQIVNDTQP--AIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTT-THHHHHHHHHTCSSH--HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHH-HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHH
Confidence 8874443 333344412 689999999988876 899999999988764
No 154
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.23 E-value=0.14 Score=63.00 Aligned_cols=524 Identities=12% Similarity=0.077 Sum_probs=255.7
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhc-CCCHHHHHHHHHHHHHhccC------hhhhhHhhhhhChHHH
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLI-GNSEKEKEYAVKLLLEFCID------EAYCKSVASEKGALVL 286 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~------~~~~~~i~~~~g~i~~ 286 (859)
+.|..|-..|..+-.. .++...+..+|. +.+..+|..|+.+|.+.... ++.+..|- ...+..
T Consensus 40 ~~r~~A~~~L~~~~~~---------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir--~~ll~~ 108 (963)
T 2x19_B 40 ENKNLAQKWLMQAQVS---------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK--AQLFTQ 108 (963)
T ss_dssp HHHHHHHHHHHHHHHS---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHhcC---------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHH--HHHHHH
Confidence 7788888877666444 355666666675 45678899999999987542 23344442 234444
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHhcCC--CcChHHHHhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCC---C-
Q 002999 287 LSSMTGNLELPALSNLADEVFKKMERI--EEIVQPLAAAGRFEPLINRLCQ-----GSDNVQIEMAFLVGKLTLT---N- 355 (859)
Q Consensus 287 Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~~~~~~i~~~G~i~~Lv~lL~~-----~~~~~~~~aa~~L~~la~~---~- 355 (859)
+... . ..++.++...+.+|..++.. +++- .+.++.|+..+.+ .++.....+...|..++.. .
T Consensus 109 l~~~-~-~~~~~ir~kl~~~la~i~~~~~p~~W-----p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~ 181 (963)
T 2x19_B 109 ITRF-A-SGSKIVLTRLCVALASLALSMMPDAW-----PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR 181 (963)
T ss_dssp HHHT-T-TSCHHHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHH-c-CCCHHHHHHHHHHHHHHHHHhCcccc-----chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhccc
Confidence 4442 1 23577888889999988754 3332 2567888888865 2445566666666666521 1
Q ss_pred ---ccHHHHH---HhhHHH----HHHHhC---Ch-hHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHH
Q 002999 356 ---SCKEHIA---RQCAKV----LVELLS---KP-AGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPE 421 (859)
Q Consensus 356 ---~~~~~i~---~~gi~~----Lv~lL~---~~-~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~ 421 (859)
+.+..+. ...++. +..++. ++ .+...++.++........... .....++.++..+. .+.
T Consensus 182 ~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~--~~~~ll~~l~~~l~-----~~~ 254 (963)
T 2x19_B 182 LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ--DCEALIQAAFAALQ-----DSE 254 (963)
T ss_dssp C---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG--GTHHHHHHHHHHTT-----STT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc--cchHHHHHHHHHhC-----Cch
Confidence 1112221 112333 344444 22 367778888755443221110 11234566666662 356
Q ss_pred HHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHH-------hhcCCChHHHHHHHHHHHHhccCChhHHHHH
Q 002999 422 LKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLG-------LLSGVSPQCQVSTLRILCGIASSPQAAESVA 494 (859)
Q Consensus 422 ~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~-------LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~ 494 (859)
+++.|+.+|..+.......... ... ...++.++. .+...+.+.....+..+..++..... .+.
T Consensus 255 ~~~~a~~~l~~i~~~~~~~~~~-------~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~--~l~ 324 (963)
T 2x19_B 255 LFDSSVEAIVNAISQPDAQRYV-------NTL-LKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSR--ALL 324 (963)
T ss_dssp THHHHHHHHHHHHTCTTGGGCH-------HHH-HHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHcccccccCH-------HHH-HHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHH--HHH
Confidence 8899999999998754321100 000 111222222 22334555555566666666542110 000
Q ss_pred ------HHHhhCCCHHHHHHhhcC-----CChhHHHHHHHHHHHHhhhc---c----HHHHHhcCCC--CchHHHHHhhc
Q 002999 495 ------THIKSGDGIKYIIQFLEH-----PEVEHRTYAFRLTRILSERI---G----QDLAYALKPF--DKLVLFKDKIL 554 (859)
Q Consensus 495 ------~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~~L~~Ls~~~---~----~~~~~~l~~~--g~i~~Lv~lL~ 554 (859)
..+. ..++.++.+..+ .++++...++..+..+++.. . ......+... ..++.++..+.
T Consensus 325 ~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~ 402 (963)
T 2x19_B 325 DQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQ 402 (963)
T ss_dssp HCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111 234555555554 24455555555555554211 0 1111111100 23344444443
Q ss_pred cCCCc-------h------hHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhh
Q 002999 555 DNQSA-------N------CERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGL 621 (859)
Q Consensus 555 ~~~~~-------~------~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~ 621 (859)
.+++. + +.+..+..+|..++. +.....++.+...+...-.... ........++++.+
T Consensus 403 ~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~-------~~~~~~l~~~~~~l~~~l~~~~---~~~~w~~~eaal~a 472 (963)
T 2x19_B 403 FPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYE-------MLGAELLSNLYDKLGRLLTSSE---EPYSWQHTEALLYG 472 (963)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHTCC---CSCCHHHHHHHHHH
T ss_pred CCCcccccCCChhHHHHHHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 22110 0 012233333333321 1112233444444433210000 01112235666666
Q ss_pred hhhcccCCChhhHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCC
Q 002999 622 LLHFTRSVNPQTLGMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPP 701 (859)
Q Consensus 622 L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (859)
+..++..-.......+. .+++.|.++ ..+ ++.++..++++++.++..-.....
T Consensus 473 l~~i~~~~~~~~~~~l~--~l~~~l~~l-~~~-~~~vr~~~~~~l~~~~~~l~~~~~----------------------- 525 (963)
T 2x19_B 473 FQSIAETIDVNYSDVVP--GLIGLIPRI-SIS-NVQLADTVMFTIGALSEWLADHPV----------------------- 525 (963)
T ss_dssp HHHHTTSCCSSCCSHHH--HHHHHGGGS-CCC-SHHHHHHHHHHHHHTHHHHHHCHH-----------------------
T ss_pred HHHHHhhcCchhhHHHH--HHHHHHHhC-CCC-cHHHHHHHHHHHHHHHHHHHhCHH-----------------------
Confidence 66665441111101111 123333333 333 788999999999988753211000
Q ss_pred CCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHHHHHHHHHHhhhhccCc-chhhHHHHHHhcCChHHHHHH
Q 002999 702 PEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLIIDTSK-NFKRGVDELEREGALDAVVDL 780 (859)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~-~~~~~~~~i~~~g~i~~L~~l 780 (859)
.-...++.|+..|.+ +.|+..|+.||.+|+.+ -. ...+... .-+..|.++
T Consensus 526 ---------------------~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~-~~~~l~p~~~-----~il~~l~~~ 576 (963)
T 2x19_B 526 ---------------------MINSVLPLVLHALGN--PELSVSSVSTLKKICRE-CKYDLPPYAA-----NIVAVSQDV 576 (963)
T ss_dssp ---------------------HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH-TGGGCTTTHH-----HHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH-HHHHHHhhHH-----HHHHHHHHH
Confidence 012457788888854 89999999999999965 11 1111111 122334455
Q ss_pred hhhc-CchhHHHHHHHHHHHHHhcc--ccccccccchhhHHHHHHHhhc-----CChhhHHHHHHHHHHH
Q 002999 781 FTEV-RPGLLQERTVWMLERVLRVE--GHSHRYSLNQSLVRALVEAFKH-----GNANAKRHAQEALTNL 842 (859)
Q Consensus 781 l~~~-~~~~~~~~A~~~l~~~~~~~--~~~~~~~~~~~~~~~Lv~ll~~-----~~~~~~~~A~~~L~~L 842 (859)
+... -+...+.....++..++... +....| -..+..++...++. .++..+......+..|
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLLSALQVEEILKN--LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH--HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5421 24567888888888887522 222222 22344566666542 2566666555555544
No 155
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.21 E-value=4.9e-05 Score=66.92 Aligned_cols=44 Identities=16% Similarity=0.401 Sum_probs=0.0
Q ss_pred ccCcccccccCCC-----------------ee-cCCCchhcHHHHHHHHHhcccCCCCCCCCCCCccc
Q 002999 77 FLCPLTKQVMKEP-----------------VV-LESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVL 126 (859)
Q Consensus 77 ~~cpi~~~~m~dP-----------------v~-~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l 126 (859)
=.|+||.+-|.+| |+ .+|||.|.+.||.+|+.. +.+||+||.++
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~------~~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREW 110 (117)
T ss_dssp --------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc------CCcCCCCCCee
Confidence 4699999999885 32 489999999999999987 68999999875
No 156
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.19 E-value=0.58 Score=57.64 Aligned_cols=420 Identities=11% Similarity=0.037 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHhccc--C-cchHHHHHhhCchHHHHHHhc----------------CCCHHHHHHHHHHHHHhccChhh-
Q 002999 214 ILRSKALMALLSMAK--D-EESKKIMLEEGVTKSVIHSLI----------------GNSEKEKEYAVKLLLEFCIDEAY- 273 (859)
Q Consensus 214 ~~~~~al~~L~~L~~--~-~~~r~~i~~~g~i~~Lv~lL~----------------~~~~~~~~~A~~~L~~Ls~~~~~- 273 (859)
.++..++.++..+.. . +.. .....++.+.. |. .++++.++.|+.+|..+...++.
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~ 278 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCH 278 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred hHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccc
Confidence 578888888876544 2 222 23445666665 41 13467889999999988764321
Q ss_pred -hhHhhhhhChHHHHHHhhc------CCCCh---HHHHHHHHHHHHhcCCCcChHHHH---------hc----CChHHHH
Q 002999 274 -CKSVASEKGALVLLSSMTG------NLELP---ALSNLADEVFKKMERIEEIVQPLA---------AA----GRFEPLI 330 (859)
Q Consensus 274 -~~~i~~~~g~i~~Lv~lL~------~~~~~---~~~~~a~~aL~nL~~~~~~~~~i~---------~~----G~i~~Lv 330 (859)
...+. ...++.++.+.. ..+|. +.....+..+..+.... ...+. .. ..++.|+
T Consensus 279 ~~~~~~--~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~ll 354 (971)
T 2x1g_F 279 NYPKTA--FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERH--STLLLSGITSADPELSILVHRIVQEIL 354 (971)
T ss_dssp GCHHHH--HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHT--HHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ccHHHH--HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--HHHHHHHhccCcccccHHHHHHHHHHH
Confidence 11111 224444444322 13342 66666677766665321 11111 11 2344444
Q ss_pred HHhcc-----CChHHHHHHHHHHHHhcC-----C----Ccc-HHHHH---HhhHHHHHHHhC---Ch-------------
Q 002999 331 NRLCQ-----GSDNVQIEMAFLVGKLTL-----T----NSC-KEHIA---RQCAKVLVELLS---KP------------- 376 (859)
Q Consensus 331 ~lL~~-----~~~~~~~~aa~~L~~la~-----~----~~~-~~~i~---~~gi~~Lv~lL~---~~------------- 376 (859)
.+... .++++...+...+..++. . ... +..+. ..-++.++..+. +.
T Consensus 355 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f 434 (971)
T 2x1g_F 355 HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF 434 (971)
T ss_dssp HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence 44422 467777777777666543 1 111 11111 122344555443 11
Q ss_pred -hHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhc--cCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCccc
Q 002999 377 -AGRAASLKALYNLSGLDDNATILVDSALLPALTDILFK--SHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQ 453 (859)
Q Consensus 377 -~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~--~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~ 453 (859)
..+..+..+|..++..-.. .+.. -+.+.+-..+.. ....+...++.|+.++..++.......
T Consensus 435 ~~~R~~~~~~l~~~~~~~~~--~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~------------ 499 (971)
T 2x1g_F 435 RCYRQDISDTFMYCYDVLND--YILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE------------ 499 (971)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhH--HHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh------------
Confidence 3456677777777654331 1110 011222222322 112456789999999999876543211
Q ss_pred ccchHHHHHHhh---c--CCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHH
Q 002999 454 SESIVSSLLGLL---S--GVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRIL 528 (859)
Q Consensus 454 ~~~~i~~Ll~LL---~--~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~L 528 (859)
...++.++.++ . +.++.++..+++++..++..-........ ..++.|+..|+ +.++..|+.++..+
T Consensus 500 -~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l~---~~v~~~A~~al~~l 570 (971)
T 2x1g_F 500 -KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGLN---SSMSAQATLGLKEL 570 (971)
T ss_dssp --CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHHH---SSCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHhC---hHHHHHHHHHHHHH
Confidence 12233333332 3 34789999999999998753111001111 23566777672 78999999999999
Q ss_pred hhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCc--HHHHHHHHhccHHHHHHHHhhhcccccCC
Q 002999 529 SERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSE--EEVKTLLEATFIKWIVITLQTHKSSFNTR 606 (859)
Q Consensus 529 s~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~--~~~~~l~~~g~v~~L~~lL~~~~~~~~~r 606 (859)
++.....+...+. ..+..|..++..++.....+..+..+++.+...- ......+ ...+++++..+........
T Consensus 571 ~~~~~~~l~p~~~--~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~-- 645 (971)
T 2x1g_F 571 CRDCQLQLKPYAD--PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL-DIIVSPCFEELQAICQADS-- 645 (971)
T ss_dssp HHHCHHHHHHHHH--HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-HHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHhccccHH--HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHhcCC--
Confidence 8544444433332 4667777888774321366777777777665421 1111111 1223444444443211100
Q ss_pred CCCCcchhHHhhhhhhhhcccC-CC-----------hhhHHHHHhcCchHHHHHhhcCC-ChHHHHHHHHHHhhhhhhh
Q 002999 607 SSRPISNIAEGLLGLLLHFTRS-VN-----------PQTLGMVREQRLMTIFRDQLSFP-SKARVKQLAAHGLKNLSEA 672 (859)
Q Consensus 607 ~~~~~~~~~e~~~~~L~~~~~~-~~-----------~~~~~~i~~~~~i~~Lv~lL~~~-~~~~vk~~Aa~aL~~ls~~ 672 (859)
.+..........++.|..+... .. ++.... ....++|.+..++... .++.+.+.+.++++.+...
T Consensus 646 ~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 646 KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 0000000111122222222110 00 111111 1246788888887542 2678999999999987653
No 157
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0035 Score=63.93 Aligned_cols=186 Identities=11% Similarity=0.122 Sum_probs=129.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hccC-hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC---CcCh-H
Q 002999 245 VIHSLIGNSEKEKEYAVKLLLE-FCID-EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI---EEIV-Q 318 (859)
Q Consensus 245 Lv~lL~~~~~~~~~~A~~~L~~-Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~---~~~~-~ 318 (859)
+...+.+.+...|..|+..|.. +..+ ++.......-...+..|...+....+..++..|+.+|..|+.. +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788899999999999999 8643 2211001111346778888883377888999999999999842 2222 2
Q ss_pred HHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCC-ccHHHH-HHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc
Q 002999 319 PLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN-SCKEHI-ARQCAKVLVELLS--KPAGRAASLKALYNLSGLDD 394 (859)
Q Consensus 319 ~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~-~~~~~i-~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~ 394 (859)
.... .+|+++..+.+....++..+..+|..++..- ..-..- .+..++.|+..|+ ++.++..++.+|..+.....
T Consensus 101 y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 2222 6899999999988999988888888776522 111000 1223577788888 88999999999999986553
Q ss_pred ch-HHH---HHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002999 395 NA-TIL---VDSALLPALTDILFKSHDASPELKELAAATIANVVS 435 (859)
Q Consensus 395 ~~-~~i---~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~ 435 (859)
.. ..+ +....+|.|..+|. +....+|..|..+|..++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~---D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVN---DTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 21 222 22578899999994 4678999999999998876
No 158
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.01 E-value=1.2 Score=54.75 Aligned_cols=498 Identities=12% Similarity=0.047 Sum_probs=251.3
Q ss_pred hcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-----CcChHHHHhc
Q 002999 249 LIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-----EEIVQPLAAA 323 (859)
Q Consensus 249 L~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-----~~~~~~i~~~ 323 (859)
..+++++.+..|-..|.++-.+ +++...+..+|..+.++.++..|+.+|.|.... ++.....++.
T Consensus 34 ~~~~~~~~r~~A~~~L~~~~~~----------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~ 103 (963)
T 2x19_B 34 YYDPNIENKNLAQKWLMQAQVS----------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA 103 (963)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHS----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhcC----------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH
Confidence 4457788888888888877543 566777788887567889999999999998632 2222333333
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhcCCC--ccHHHHHHhhHHHHHHHhCC-------hhHHHHHHHHHHHhhCC--
Q 002999 324 GRFEPLINRLCQGSDNVQIEMAFLVGKLTLTN--SCKEHIARQCAKVLVELLSK-------PAGRAASLKALYNLSGL-- 392 (859)
Q Consensus 324 G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~--~~~~~i~~~gi~~Lv~lL~~-------~~~~~~a~~aL~~Ls~~-- 392 (859)
..++.+... ..++..++...+.+|..++..+ +.. ...++.|++++++ +.....++.+|..|+..
T Consensus 104 ~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~W----p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 104 QLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAW----PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcccc----chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 333333331 2246888888888888887642 221 1334667776652 33567788888877631
Q ss_pred -Cc---ch-HHHHH--cCcHHHHH----HHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHH
Q 002999 393 -DD---NA-TILVD--SALLPALT----DILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSL 461 (859)
Q Consensus 393 -~~---~~-~~i~~--~G~i~~Lv----~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~L 461 (859)
.. .+ ..+.+ ...++.++ .++... ..+..+...++.++......+. . .......++.+
T Consensus 179 ~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~-~~~~~~~~~~l~~l~~wi~~~~--~---------~~~~~~ll~~l 246 (963)
T 2x19_B 179 TSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQP-SSPSCVRQKVLKCFSSWVQLEV--P---------LQDCEALIQAA 246 (963)
T ss_dssp TCCC---------CCSGGGHHHHHHHHHHHHSCT-TCCHHHHHHHHHHHHHHHTSSC--C---------GGGTHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHHHcCCC--C---------cccchHHHHHH
Confidence 00 11 11111 12344444 444332 2222477777777755443111 1 11235567777
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCChh--HHHHHHHHhh--CCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHH
Q 002999 462 LGLLSGVSPQCQVSTLRILCGIASSPQA--AESVATHIKS--GDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLA 537 (859)
Q Consensus 462 l~LL~~~~~~~~~~a~~aL~~La~~~~~--~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~ 537 (859)
+..+. +++++..++.+|..+...... .......+.. .+..+.+...+..++.+.....++++..+.........
T Consensus 247 ~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~ 324 (963)
T 2x19_B 247 FAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALL 324 (963)
T ss_dssp HHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 77774 567889999999988875321 1111111110 01122232233444555555566676666532222221
Q ss_pred ------HhcCCCCchHHHHHhhccC----CCchhHHHHHHHHHHHhcCC----c----HHHHHHHHhccHHHHHHHHhhh
Q 002999 538 ------YALKPFDKLVLFKDKILDN----QSANCERSDAACILANIQLS----E----EEVKTLLEATFIKWIVITLQTH 599 (859)
Q Consensus 538 ------~~l~~~g~i~~Lv~lL~~~----~~~~~~~~~A~~~L~~L~~~----~----~~~~~l~~~g~v~~L~~lL~~~ 599 (859)
..+. ..++.++.+...+ .+ ..+...+......+... . ........ ..++.++..+-..
T Consensus 325 ~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~-~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~ll~~ 400 (963)
T 2x19_B 325 DQVEHWQSFL--ALVNMIMFCTGIPGHYPVN-ETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYR-PVYFQLVDVLLHK 400 (963)
T ss_dssp HCGGGHHHHH--HHHHHHHHHHTCSSCTTTT-CGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cCccchHHHH--HHHHHHHHHHcCCCCCCch-hhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHHHHH
Confidence 1111 3456666665541 11 13444444444444321 0 11111111 2333333332221
Q ss_pred cccccCCCCCCc------------chhHHhhhhhhhhcccCCChhhHHHHHhcCchHHHHHhh----cCCChHHHHHHHH
Q 002999 600 KSSFNTRSSRPI------------SNIAEGLLGLLLHFTRSVNPQTLGMVREQRLMTIFRDQL----SFPSKARVKQLAA 663 (859)
Q Consensus 600 ~~~~~~r~~~~~------------~~~~e~~~~~L~~~~~~~~~~~~~~i~~~~~i~~Lv~lL----~~~~~~~vk~~Aa 663 (859)
.. ++.... ......+..+|..++.....+... -+++.+.+.+ .+. ++..++.+.
T Consensus 401 ~~----~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~-----~~~~~l~~~l~~~~~~~-~w~~~eaal 470 (963)
T 2x19_B 401 AQ----FPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLS-----NLYDKLGRLLTSSEEPY-SWQHTEALL 470 (963)
T ss_dssp HS----CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-----HHHHHHHHHHHTCCCSC-CHHHHHHHH
T ss_pred Hc----CCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHH-----HHHHHHHHHHHhcCCCC-chHHHHHHH
Confidence 10 000000 000111111221111100011111 1123333444 443 788999999
Q ss_pred HHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhccCChhHH
Q 002999 664 HGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLAEEDTNVE 743 (859)
Q Consensus 664 ~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 743 (859)
++++.++...... ...+ +. ..++.|.++ .++++.++
T Consensus 471 ~al~~i~~~~~~~----------------------------------------~~~~-l~--~l~~~l~~l-~~~~~~vr 506 (963)
T 2x19_B 471 YGFQSIAETIDVN----------------------------------------YSDV-VP--GLIGLIPRI-SISNVQLA 506 (963)
T ss_dssp HHHHHHTTSCCSS----------------------------------------CCSH-HH--HHHHHGGGS-CCCSHHHH
T ss_pred HHHHHHHhhcCch----------------------------------------hhHH-HH--HHHHHHHhC-CCCcHHHH
Confidence 9999887542110 0000 00 122222232 23578899
Q ss_pred HHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhcccccccccc-chhhHHHHHH
Q 002999 744 IAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSL-NQSLVRALVE 822 (859)
Q Consensus 744 ~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~-~~~~~~~Lv~ 822 (859)
..++.+|+.+... ...... .. ...++.|++.+. ++.++..|+++|.+++.. ....+.. ...+...|..
T Consensus 507 ~~~~~~l~~~~~~----l~~~~~-~l-~~vl~~l~~~l~---~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 507 DTVMFTIGALSEW----LADHPV-MI-NSVLPLVLHALG---NPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQD 575 (963)
T ss_dssp HHHHHHHHHTHHH----HHHCHH-HH-TTTHHHHHHHTT---CGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHhCHH-HH-HHHHHHHHHHhC---CchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHH
Confidence 9999999998854 111112 22 257777888774 388999999999999852 2222211 1233456667
Q ss_pred HhhcC--ChhhHHHHHHHHHHHhh
Q 002999 823 AFKHG--NANAKRHAQEALTNLKQ 844 (859)
Q Consensus 823 ll~~~--~~~~~~~A~~~L~~L~~ 844 (859)
++..+ +...+..+.+++..+..
T Consensus 576 ~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 576 VLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HhccCCCChHHHHHHHHHHHHHHh
Confidence 77764 46778887777777654
No 159
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.98 E-value=0.032 Score=67.25 Aligned_cols=296 Identities=14% Similarity=0.086 Sum_probs=184.3
Q ss_pred HHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc-
Q 002999 153 VSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE- 231 (859)
Q Consensus 153 i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~- 231 (859)
++.+.+.+..++ ..++ ..+...|..+.......+ ....+.+..|.+.+..... . +.|+.++..|+....
T Consensus 16 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~----~--~~a~~~~~~~~~~~~~ 85 (986)
T 2iw3_A 16 LEELFQKLSVAT-ADNR-HEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKT----A--ANAMQAVAHIANQSNL 85 (986)
T ss_dssp HHHHHHHHTTCC-TTTH-HHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHH----H--HHHHHHHHHHTCTTTC
T ss_pred HHHHHhhccccc-hhHH-HHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCC----H--HHHHHHHHHHHHhcCC
Confidence 333445555433 2233 347777888766432222 1123667778887766533 3 889999999986511
Q ss_pred --hHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccC-hhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHH
Q 002999 232 --SKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID-EAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFK 308 (859)
Q Consensus 232 --~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 308 (859)
.-+. .--+.++.++..+......++..|..++..+... +... ....+|.|+..|..+..=..+..|+.++.
T Consensus 86 ~~~~e~-~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a-----~~~~~~~~~~~~~~~~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 86 SPSVEP-YIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA-----IKALLPHLTNAIVETNKWQEKIAILAAFS 159 (986)
T ss_dssp CTTTHH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCccc-chHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1121 1125788888888877788888887777766543 2211 14478999999984445678888999999
Q ss_pred HhcCCCcChHHHHh--cCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhCChhHHHHHHHHH
Q 002999 309 KMERIEEIVQPLAA--AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLSKPAGRAASLKAL 386 (859)
Q Consensus 309 nL~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~~~~~~~~a~~aL 386 (859)
.|+... ..++.. ...||.+-+.+.+-.++++..+..++..++..-+|+.. +.-+|.|++.+.+|+-...+...|
T Consensus 160 ~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~--~~~~~~~~~~~~~p~~~~~~~~~l 235 (986)
T 2iw3_A 160 AMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI--ERFIPSLIQCIADPTEVPETVHLL 235 (986)
T ss_dssp HHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT--GGGHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch--hhhHHHHHHHhcChhhhHHHHHHh
Confidence 998543 233332 35788888888888899999999999888865444432 234788888888665444444444
Q ss_pred HHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhh-
Q 002999 387 YNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLL- 465 (859)
Q Consensus 387 ~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL- 465 (859)
..-..-.+-... .=+=.+|.|.+-|.. ....++++++-++.|+|.--.+... ..-++|.|+.-+
T Consensus 236 ~~~tfv~~v~~~-~l~~~~p~l~r~l~~---~~~~~~r~~~~~~~n~~~lv~~~~~-----------~~~f~~~l~p~~~ 300 (986)
T 2iw3_A 236 GATTFVAEVTPA-TLSIMVPLLSRGLNE---RETGIKRKSAVIIDNMCKLVEDPQV-----------IAPFLGKLLPGLK 300 (986)
T ss_dssp TTCCCCSCCCHH-HHHHHHHHHHHHHTS---SSHHHHHHHHHHHHHHHTTCCCHHH-----------HHHHHTTTHHHHH
T ss_pred hcCeeEeeecch-hHHHHHHHHHhhhcc---CcchhheeeEEEEcchhhhcCCHHH-----------HhhhhhhhhhHHH
Confidence 333322221110 001136777777743 6689999999999999985544331 123344444333
Q ss_pred ----cCCChHHHHHHHHHHHHh
Q 002999 466 ----SGVSPQCQVSTLRILCGI 483 (859)
Q Consensus 466 ----~~~~~~~~~~a~~aL~~L 483 (859)
...+|++++.+.+++.-|
T Consensus 301 ~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 301 SNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHTTTCCSHHHHHHHHHHHHHH
T ss_pred HHhhccCCHHHHHHHHHHHHHH
Confidence 236889998877777666
No 160
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.94 E-value=0.023 Score=59.05 Aligned_cols=155 Identities=16% Similarity=0.080 Sum_probs=117.4
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE 231 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~ 231 (859)
++..+++.|.+++.+ + .+.++..|+.+-.++...-..+++.|++..|++....++. ..+..++.+|..|-.+.+
T Consensus 119 ra~~iiekL~~~~~~-~-lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g----N~q~Y~L~AL~~LM~~v~ 192 (339)
T 3dad_A 119 RVNAILEKLYSSSGP-E-LRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH----NYQSYILRALGQLMLFVD 192 (339)
T ss_dssp HHHHHHHHHHHCCHH-H-HHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH----HHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHhcCCcH-H-HHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh----HHHHHHHHHHHHHHhccc
Confidence 466677888864432 3 4468999998555566666778888999999999988877 999999999999999877
Q ss_pred hHHHHH-hhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChh-hhhHhhh-------hhC--hHHHHHHhhc--CCCChH
Q 002999 232 SKKIML-EEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEA-YCKSVAS-------EKG--ALVLLSSMTG--NLELPA 298 (859)
Q Consensus 232 ~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~-------~~g--~i~~Lv~lL~--~~~~~~ 298 (859)
....++ ....|..+..++.+.+..+...|+.+|..+....+ +...+.. ..| -...|+.+|+ ++.|.+
T Consensus 193 Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 193 GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 776666 56689999999999889999999999998876543 2222211 111 2668999996 467889
Q ss_pred HHHHHHHHHHHhcC
Q 002999 299 LSNLADEVFKKMER 312 (859)
Q Consensus 299 ~~~~a~~aL~nL~~ 312 (859)
++.+|...+-.+..
T Consensus 273 lq~~amtLIN~lL~ 286 (339)
T 3dad_A 273 LLVYTVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99998877766653
No 161
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.42 E-value=2.2 Score=52.86 Aligned_cols=205 Identities=13% Similarity=0.040 Sum_probs=112.0
Q ss_pred hhHhHHHHHHHhcc--cccHHHHHhhhhcCCCccchHHHHHHHHHHHHhc-----CCcchhHHHhcCcHHHHHHHHhcCC
Q 002999 136 GLAGAIEEWVNRNV--EVQVSTVVETLRKENPEVDGLDKALDIVFKISEE-----HPSNRYRVRNAGVVLLIVKLLKSSS 208 (859)
Q Consensus 136 ~l~~~I~~w~~~~~--~~~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~-----~~~~r~~i~~~g~i~~Lv~lL~~~~ 208 (859)
..|+..++|..+-. ......+...|..+.+...+. -|+..|++.... +++.|..+.+ .|+.++.+..
T Consensus 31 ~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~-~aa~~Lk~~i~~~W~~l~~~~~~~ir~-----~ll~~l~~~~ 104 (1049)
T 3m1i_C 31 VQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKF-IALSILDKLITRKWKLLPNDHRIGIRN-----FVVGMIISMC 104 (1049)
T ss_dssp HHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHH-HHHHHHHHHHHHTGGGSCHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHhhCccCCHHHHHHHHH-----HHHHHHHhhC
Confidence 34666666654321 122333444454433333333 477777776542 2233444443 3445443321
Q ss_pred CCc-----chHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChh---------
Q 002999 209 KSV-----GTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEA--------- 272 (859)
Q Consensus 209 ~~~-----~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--------- 272 (859)
.+. +..++.....++..++.. ++.+ .+.++.|+..++ .+...++.+..+|..++..-.
T Consensus 105 ~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~ 178 (1049)
T 3m1i_C 105 QDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQ 178 (1049)
T ss_dssp HCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCH
T ss_pred CccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 000 016777777788777665 3222 357888888886 455556777777777663210
Q ss_pred h-----hhHhhh-hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHH
Q 002999 273 Y-----CKSVAS-EKGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAF 346 (859)
Q Consensus 273 ~-----~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~ 346 (859)
. +..+.. -...+..+..++....++.++..++.++.+....-. ...+.+...++.+.+.+. .+++++..+..
T Consensus 179 ~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~ 256 (1049)
T 3m1i_C 179 AKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFM-TSPDTRAITLK 256 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHH-HSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHHHHHHHhC-CCHhHHHHHHH
Confidence 0 111211 122345555666544567788889999887654322 233555666666663332 37888889999
Q ss_pred HHHHhcCC
Q 002999 347 LVGKLTLT 354 (859)
Q Consensus 347 ~L~~la~~ 354 (859)
+|..+...
T Consensus 257 ~L~~i~~~ 264 (1049)
T 3m1i_C 257 CLTEVSNL 264 (1049)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 98888754
No 162
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.27 E-value=3.4 Score=50.55 Aligned_cols=298 Identities=13% Similarity=0.053 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccCh---hhhhHhhhhhChHHHHHHh
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDE---AYCKSVASEKGALVLLSSM 290 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~---~~~~~i~~~~g~i~~Lv~l 290 (859)
.++..++.+|.....--. -..++....++.+..+|.. ++.+..|+.+|..+.... +.+..+...- .+...+..
T Consensus 208 ~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l-~L~~~~~~ 283 (980)
T 3ibv_A 208 GTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNIL-NLNLFFSK 283 (980)
T ss_dssp HHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-HHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH-hHHHHHHH
Confidence 788999999998876422 2455667788999998875 789999999999886542 2332222111 11111222
Q ss_pred hc-CCCChHHHHHHHHHHHHhc------CCCc------ChHHH-Hh-cCChHHHHHHhccCChHHHHHHHHHHHHhcCC-
Q 002999 291 TG-NLELPALSNLADEVFKKME------RIEE------IVQPL-AA-AGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT- 354 (859)
Q Consensus 291 L~-~~~~~~~~~~a~~aL~nL~------~~~~------~~~~i-~~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~- 354 (859)
+. ..+|.+..+..++.+..++ .... .+... .. .+.++.++..+.++++++-..+...+..+...
T Consensus 284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~ 363 (980)
T 3ibv_A 284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSL 363 (980)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence 22 1466666554444433331 1111 01111 11 25788888888888888776665554443321
Q ss_pred ---Cc---cHH---HHHHhhHHHHHHHhC-Ch-----------------hHHHHHHHHHHHhhCCCcchHHHHHcCcHH-
Q 002999 355 ---NS---CKE---HIARQCAKVLVELLS-KP-----------------AGRAASLKALYNLSGLDDNATILVDSALLP- 406 (859)
Q Consensus 355 ---~~---~~~---~i~~~gi~~Lv~lL~-~~-----------------~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~- 406 (859)
+. ... .+...-++.+++-++ ++ +.|+.....+..++.-.. .-.++
T Consensus 364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~-------~~~l~~ 436 (980)
T 3ibv_A 364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDS-------SLFSSY 436 (980)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCH-------HHHHHH
T ss_pred HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcCh-------HHHHHH
Confidence 10 111 111222334444444 11 122222211111111110 00122
Q ss_pred ---HHHHHHhc----cCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhc-----CCChHHHH
Q 002999 407 ---ALTDILFK----SHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLS-----GVSPQCQV 474 (859)
Q Consensus 407 ---~Lv~lL~~----~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~-----~~~~~~~~ 474 (859)
.+..++.. ..+.++...|.++.+|.+++.+-....... . . ..-.-+..++-|..+++ ..+|.++.
T Consensus 437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~-~-~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~ 513 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-N-E-VDKSPTVLSQILALVTTSQVCRHPHPLVQL 513 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-C-S-SSCCBCHHHHHHHHHHHSSTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-C-c-ccchhHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 22222211 012357889999999999877543311100 0 0 00112345666666665 66789999
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHH--hhcCCChhHHHHHHHHHHHHhh
Q 002999 475 STLRILCGIASSPQAAESVATHIKSGDGIKYIIQ--FLEHPEVEHRTYAFRLTRILSE 530 (859)
Q Consensus 475 ~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~--lL~~~~~~v~~~A~~~L~~Ls~ 530 (859)
.+++++...+..-....+... ..++.++. .+.++++.++..|+.++.++++
T Consensus 514 ~~~~~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 514 LYMEILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHHHHHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 999999988765211001101 12333444 4445678899999999999974
No 163
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.01 E-value=4.5 Score=49.60 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=130.2
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-----Cc
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-----EE 315 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-----~~ 315 (859)
.+..++..+.+++.+.+..|-..|..+-.++ ++...+..+|..+.++.++..|+.+|.+.... ++
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~ 86 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 3555666666666667788888887775543 34444455555467889999999999988642 33
Q ss_pred ChHHHHhcCChHHHHHHhccC-----ChHHHHHHHHHHHHhcCCC--ccHHHHHHhhHHHHHHHhC-ChhHHHHHHHHHH
Q 002999 316 IVQPLAAAGRFEPLINRLCQG-----SDNVQIEMAFLVGKLTLTN--SCKEHIARQCAKVLVELLS-KPAGRAASLKALY 387 (859)
Q Consensus 316 ~~~~i~~~G~i~~Lv~lL~~~-----~~~~~~~aa~~L~~la~~~--~~~~~i~~~gi~~Lv~lL~-~~~~~~~a~~aL~ 387 (859)
.....++...+..++.....+ ..-++...+.+|+.++..+ +.. ...++.++++++ ++......+..|.
T Consensus 87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W----p~~l~dL~~~l~~~~~~~~~~L~iL~ 162 (1023)
T 4hat_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSSSSVNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc----hHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 333344444444444432211 2344555677777665432 110 123466777777 6666777777777
Q ss_pred HhhCC-------C--cch-H----HHHHc--CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCc
Q 002999 388 NLSGL-------D--DNA-T----ILVDS--ALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHS 451 (859)
Q Consensus 388 ~Ls~~-------~--~~~-~----~i~~~--G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 451 (859)
.|+.. . ..| . .+.+. .+++.+..+|... ....+...++.++......-+- ..
T Consensus 163 ~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~--~~~~l~~~~L~~l~s~l~WI~i----------~~ 230 (1023)
T 4hat_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG--ASSSLIVATLESLLRYLHWIPY----------RY 230 (1023)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTTSCT----------HH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCCH----------HH
Confidence 76432 1 111 1 22221 3344444555432 3457778899999887764321 13
Q ss_pred ccccchHHHHH-HhhcCCChHHHHHHHHHHHHhcc
Q 002999 452 MQSESIVSSLL-GLLSGVSPQCQVSTLRILCGIAS 485 (859)
Q Consensus 452 l~~~~~i~~Ll-~LL~~~~~~~~~~a~~aL~~La~ 485 (859)
+.+...++.++ .+|. +++++..|+.+|+.+..
T Consensus 231 i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 231 IYETNILELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred hcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHc
Confidence 55677888888 8774 57899999999999876
No 164
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.83 E-value=0.023 Score=57.37 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=44.5
Q ss_pred HHHhhhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccc
Q 002999 730 PLVDLLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHR 809 (859)
Q Consensus 730 ~Lv~lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 809 (859)
.|..+++++++.|+..++..| . .+.|..++. .++..++..++..+.
T Consensus 174 ll~~ll~D~d~~VR~aaa~~l---~-------------------~~~L~~Ll~-D~d~~VR~~aa~~l~----------- 219 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASRL---R-------------------GDDLLELLH-DPDWTVRLAAVEHAS----------- 219 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC---C-------------------GGGGGGGGG-CSSHHHHHHHHHHSC-----------
T ss_pred HHHHHHcCCCHHHHHHHHHhC---C-------------------HHHHHHHHc-CCCHHHHHHHHHcCC-----------
Confidence 455677788888888777642 1 234555666 478888888776542
Q ss_pred cccchhhHHHHHHHhhcCChhhHHHHHHHH
Q 002999 810 YSLNQSLVRALVEAFKHGNANAKRHAQEAL 839 (859)
Q Consensus 810 ~~~~~~~~~~Lv~ll~~~~~~~~~~A~~~L 839 (859)
...|..+ ++.++.+|..|+..|
T Consensus 220 -------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 -------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1244444 888888888887654
No 165
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.77 E-value=0.02 Score=57.81 Aligned_cols=83 Identities=12% Similarity=0.027 Sum_probs=53.4
Q ss_pred HhhcCCChHHHHHHHH-----HHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHH
Q 002999 463 GLLSGVSPQCQVSTLR-----ILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLA 537 (859)
Q Consensus 463 ~LL~~~~~~~~~~a~~-----aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~ 537 (859)
.++.+.++.++..++. .|..+..++.. .++......-..+.|..++++++..||..++.. +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l~~~~l~~L~~D~~~--~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~---l~-------- 123 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSPVEALTPLIRDSDE--VVRRAVAYRLPREQLSALMFDEDREVRITVADR---LP-------- 123 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSH--HHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHH---SC--------
T ss_pred HHhcCCCHHHHHHHHHhCCHHHHHHHccCcCH--HHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHh---CC--------
Confidence 4556777788877774 34445555442 455555555556678888888888998877653 21
Q ss_pred HhcCCCCchHHHHHhhccCCCchhHHHHHHH
Q 002999 538 YALKPFDKLVLFKDKILDNQSANCERSDAAC 568 (859)
Q Consensus 538 ~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~ 568 (859)
.+.|..++++++. .++..++.
T Consensus 124 --------~~~L~~L~~D~d~--~VR~~aA~ 144 (244)
T 1lrv_A 124 --------LEQLEQMAADRDY--LVRAYVVQ 144 (244)
T ss_dssp --------TGGGGGGTTCSSH--HHHHHHHH
T ss_pred --------HHHHHHHHcCCCH--HHHHHHHH
Confidence 1245666666665 88887776
No 166
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.012 Score=61.88 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=51.9
Q ss_pred CcccCcccccccCCCe-ecCCCch--hcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHH
Q 002999 75 KNFLCPLTKQVMKEPV-VLESAQA--YERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIE 142 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv-~~~~g~t--~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~ 142 (859)
-.+.|||++..|+.|| -..|.|. ||..++.+...+ ...-.||+|+..+...+|..+.-+.+.+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~----~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ----IPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH----SCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhc----CCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 3489999999999999 5689987 999998887765 22578999999888888888766655443
No 167
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.35 E-value=0.014 Score=44.50 Aligned_cols=47 Identities=13% Similarity=0.341 Sum_probs=38.7
Q ss_pred ccCcccccccCCCeecCCCc-----hhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 77 FLCPLTKQVMKEPVVLESAQ-----AYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~-----t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
-.|.|+++-..+|.+.||.. -|=+.|+.+|+... + +.+||+++.++.
T Consensus 7 ~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~-~~~C~~C~~~~~ 58 (60)
T 1vyx_A 7 PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS---R-NTACQICGVVYN 58 (60)
T ss_dssp CEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHH---T-CSBCTTTCCBCC
T ss_pred CEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhC---C-CCccCCCCCeee
Confidence 56999999888898889653 78899999999862 3 689999998764
No 168
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.08 E-value=0.83 Score=45.30 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=127.3
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCc-chHHHHHHHHHHHhcccC--cchHHHHHhhCchHH
Q 002999 168 DGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSV-GTILRSKALMALLSMAKD--EESKKIMLEEGVTKS 244 (859)
Q Consensus 168 ~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~-~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~ 244 (859)
.++..|+.-|+.++. +++-|..+.+++..-.|-.+|+..+.+. -..+|..++++++.|.+. ++.-..+.+...+|.
T Consensus 71 nRVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 71 NRVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 355568888998886 7888999999988878888888766532 126788999999999876 445566778899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhh-------hChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcCh
Q 002999 245 VIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASE-------KGALVLLSSMTGNLELPALSNLADEVFKKMERIEEIV 317 (859)
Q Consensus 245 Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~ 317 (859)
.++.+..|+.-.+..|..++..+-.++.-..-+... ..++..+|.-+....++.+.+...++-..|+.++..+
T Consensus 150 CLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar 229 (268)
T 2fv2_A 150 CLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR 229 (268)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999988776433333221 2244444444444678888899999999999888877
Q ss_pred HHHHh-------cCChHHHHHHhccCChHHHHHHHHHHHHh
Q 002999 318 QPLAA-------AGRFEPLINRLCQGSDNVQIEMAFLVGKL 351 (859)
Q Consensus 318 ~~i~~-------~G~i~~Lv~lL~~~~~~~~~~aa~~L~~l 351 (859)
..+.. .|.+.. ++ .+++..+..-...+.|+
T Consensus 230 ~aL~~~LP~~Lrd~tf~~---~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 230 EALRQCLPDQLKDTTFAQ---VL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHHSCGGGTSSTTHH---HH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHhCcHHhhChHHHH---HH-hcCHHHHHHHHHHHHhc
Confidence 76664 122222 22 24555555555555544
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.97 E-value=0.32 Score=48.22 Aligned_cols=181 Identities=17% Similarity=0.208 Sum_probs=126.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCC-----hhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHH
Q 002999 474 VSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPE-----VEHRTYAFRLTRILSERIGQDLAYALKPFDKLVL 548 (859)
Q Consensus 474 ~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~ 548 (859)
.+++..|..+|++++. +..+.++...-.|..+|+..+ +.+|..++..++.|....+.++...+.+++.+|.
T Consensus 74 cnaLaLlQcvAshpet----r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 74 CNALALLQCVASHPET----RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHCTTT----HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHcCcch----hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 4577778888999876 456677777777888886654 3578899999999998888899899888899999
Q ss_pred HHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHHHHH-hccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhccc
Q 002999 549 FKDKILDNQSANCERSDAACILANIQLSEEEVKTLLE-ATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTR 627 (859)
Q Consensus 549 Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~-~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~ 627 (859)
.++.++.++. -.+..|..++..+-.++..+.-+.+ ..-+-++...|...-..- ...+...+.+.++.+-.+++.
T Consensus 150 CLrime~Gse--lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l---~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 150 CLRIMESGSE--LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQL---SKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHHHHHHSCH--HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHT---TTSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhccH--HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHhc
Confidence 9999999997 7788999999999888877744444 333333333333221100 012334567888888888874
Q ss_pred CCChhhHHHHHhcCchHH------HHHhhcCCChHHHHHHHHHHhhhh
Q 002999 628 SVNPQTLGMVREQRLMTI------FRDQLSFPSKARVKQLAAHGLKNL 669 (859)
Q Consensus 628 ~~~~~~~~~i~~~~~i~~------Lv~lL~~~~~~~vk~~Aa~aL~~l 669 (859)
|+..++.+.. .+|. +..++++ ++.+|+.-..-+.|+
T Consensus 225 --n~rar~aL~~--~LP~~Lrd~tf~~~l~~--D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 225 --NPRAREALRQ--CLPDQLKDTTFAQVLKD--DTTTKRWLAQLVKNL 266 (268)
T ss_dssp --SHHHHHHHHH--HSCGGGTSSTTHHHHTS--CHHHHHHHHHHHHHS
T ss_pred --CHHHHHHHHH--hCcHHhhChHHHHHHhc--CHHHHHHHHHHHHhc
Confidence 7888887764 3332 3345553 677887766666554
No 170
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.57 E-value=12 Score=46.07 Aligned_cols=200 Identities=14% Similarity=0.133 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhc-CCCHHHHHHHHHHHHHhccC------hhhhhHhhhhhChHHH
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLI-GNSEKEKEYAVKLLLEFCID------EAYCKSVASEKGALVL 286 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~------~~~~~~i~~~~g~i~~ 286 (859)
..|..|-..|..+-.. .++...+..+|. +.+..+|..|+.+|.+.... ++.+..|- ...+..
T Consensus 31 ~~r~~Ae~~L~~~~~~---------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir--~~ll~~ 99 (1049)
T 3m1i_C 31 VQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIR--NFVVGM 99 (1049)
T ss_dssp HHHHHHHHHHHHHHHS---------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHhC---------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHH--HHHHHH
Confidence 5677777777655433 356666666664 45678899999999987542 34444442 234444
Q ss_pred HHHhhcCCC-----ChHHHHHHHHHHHHhcCC--CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCC-----
Q 002999 287 LSSMTGNLE-----LPALSNLADEVFKKMERI--EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLT----- 354 (859)
Q Consensus 287 Lv~lL~~~~-----~~~~~~~a~~aL~nL~~~--~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~----- 354 (859)
+...-. .. ++.++...+.++..++.. ++.- .+.++.|+..+. .++..+..+..+|..++..
T Consensus 100 l~~~~~-~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~ 172 (1049)
T 3m1i_C 100 IISMCQ-DDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFS 172 (1049)
T ss_dssp HHHHHH-CHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHhhCC-ccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhc
Confidence 443322 11 356777788888888753 3221 246788888886 4555566666666666521
Q ss_pred Cc----cH-----HHHHHh---hHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCC
Q 002999 355 NS----CK-----EHIARQ---CAKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFKSHDAS 419 (859)
Q Consensus 355 ~~----~~-----~~i~~~---gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~ 419 (859)
.+ .+ ..+... ....+..+|. +..++..++.++.+....-+. ..+.+...++.+...+.. +
T Consensus 173 ~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~----~ 247 (1049)
T 3m1i_C 173 AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT----S 247 (1049)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH----S
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC----C
Confidence 11 11 223221 1233444554 567888899999887654332 335556667766633321 4
Q ss_pred HHHHHHHHHHHHHhhcC
Q 002999 420 PELKELAAATIANVVSN 436 (859)
Q Consensus 420 ~~~~~~a~~~L~nL~~~ 436 (859)
+.++..|+.+|..+...
T Consensus 248 ~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 68899999999998876
No 171
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.46 E-value=0.032 Score=44.41 Aligned_cols=47 Identities=11% Similarity=0.330 Sum_probs=37.1
Q ss_pred ccCcccccccCCCe-ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 77 FLCPLTKQVMKEPV-VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 77 ~~cpi~~~~m~dPv-~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
-.|+||.+++..=. -..|||.|=..||.+||.. ....+||.++.+..
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~----~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS----NAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTT----CSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHh----cCCCCCCCCcCcCC
Confidence 45999999987432 2279999999999999987 11379999998764
No 172
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.32 E-value=0.019 Score=47.73 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=37.5
Q ss_pred cCcccccccCCCe-ecCCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 78 LCPLTKQVMKEPV-VLESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 78 ~cpi~~~~m~dPv-~~~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
.||+|.-....=. ++||+|.||..|+..|..+ + ..+||.|++++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~----~-~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK----G-DKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT----T-CCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc----c-CCCCcCcCCeeee
Confidence 5777777666544 7899999999999999976 3 6899999987754
No 173
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.30 E-value=13 Score=45.29 Aligned_cols=470 Identities=10% Similarity=0.058 Sum_probs=230.1
Q ss_pred CHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCC--ChHHHHHHHHHHHHhcC-CCcC----hHHHHhcCC
Q 002999 253 SEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLE--LPALSNLADEVFKKMER-IEEI----VQPLAAAGR 325 (859)
Q Consensus 253 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~~a~~aL~nL~~-~~~~----~~~i~~~G~ 325 (859)
+++.|..|-..|..+-.+ +++......+|..+. ++.++.-|+.+|.+... .+.. ...-++...
T Consensus 21 d~~~r~~A~~~L~~~q~s----------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~l 90 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS----------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSV 90 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS----------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC----------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHH
Confidence 678888888888887544 345566667776332 78888889988887764 2222 222233233
Q ss_pred hHHHHHHh-ccCChHHHHHHHHHHHHhcCCC--ccHHHHHHhhHHHHHHHhC--Ch-hHHHHHHHHHHHhhCC----C--
Q 002999 326 FEPLINRL-CQGSDNVQIEMAFLVGKLTLTN--SCKEHIARQCAKVLVELLS--KP-AGRAASLKALYNLSGL----D-- 393 (859)
Q Consensus 326 i~~Lv~lL-~~~~~~~~~~aa~~L~~la~~~--~~~~~i~~~gi~~Lv~lL~--~~-~~~~~a~~aL~~Ls~~----~-- 393 (859)
+..+...- ..++.-++...+.+|..++... ... ...++-|+.+++ +. ......+++|..|+.. .
T Consensus 91 l~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~ 166 (980)
T 3ibv_A 91 WSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVL 166 (980)
T ss_dssp HHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccc
Confidence 33333210 0245667888888888776422 110 012345555555 23 2334445555533321 0
Q ss_pred c-----c-----hHHHHHc---CcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHH
Q 002999 394 D-----N-----ATILVDS---ALLPALTDILFKS-HDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVS 459 (859)
Q Consensus 394 ~-----~-----~~~i~~~---G~i~~Lv~lL~~~-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~ 459 (859)
. . ++.+.+. -+++....+|... ...+..+...++.+|......-+. ..+.....++
T Consensus 167 ~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~----------~~i~~~~ll~ 236 (980)
T 3ibv_A 167 KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI----------NLIVNEPCMN 236 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH----------HHHHCHHHHH
T ss_pred cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH----------HhhhcchHHH
Confidence 0 1 1222221 1134444444331 113467888899999887764321 1355677888
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhc--CCChhHHHHHHHHHHHHhhh------
Q 002999 460 SLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLE--HPEVEHRTYAFRLTRILSER------ 531 (859)
Q Consensus 460 ~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~~L~~Ls~~------ 531 (859)
.++++|.. ++++..|+.+|+.+........+-...+..- .+...+.-+. ..+.+....-++++..+...
T Consensus 237 ~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l-~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~ 313 (980)
T 3ibv_A 237 LLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNIL-NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKS 313 (980)
T ss_dssp HHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH-hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88888865 7999999999999876643222211222211 1222333232 35556665555555544311
Q ss_pred cc----HHH----HHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhcCCcHHHHH-----HHHhccHHHHHHHHhh
Q 002999 532 IG----QDL----AYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQLSEEEVKT-----LLEATFIKWIVITLQT 598 (859)
Q Consensus 532 ~~----~~~----~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-----l~~~g~v~~L~~lL~~ 598 (859)
.+ .+. ...+. +.++.++.++.+++. ++...+...+..+......... -.....++.|+..+-.
T Consensus 314 ~~~~~~~~~~~~~~~~l~--~ll~~lL~~~~~~~d--eVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~ 389 (980)
T 3ibv_A 314 DPSELSPELKENCSFQLY--NLFPYLIRYLSDDYD--ETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIK 389 (980)
T ss_dssp SCC--CHHHHHHHHHHHH--HTHHHHHHHHTCSSH--HHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhhhHHHHHH--HHHHHHHHHhCCCch--hHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 11 000 01111 567888888887765 5554444443333211000000 0001223333333322
Q ss_pred -hcccccCCCCC----C-c---chhHHhhhhhhhhcccCCChhh-HHHHHhcCchHHHHHhhcC--CChHHHHHHHHHHh
Q 002999 599 -HKSSFNTRSSR----P-I---SNIAEGLLGLLLHFTRSVNPQT-LGMVREQRLMTIFRDQLSF--PSKARVKQLAAHGL 666 (859)
Q Consensus 599 -~~~~~~~r~~~----~-~---~~~~e~~~~~L~~~~~~~~~~~-~~~i~~~~~i~~Lv~lL~~--~~~~~vk~~Aa~aL 666 (859)
..-....-... . . ..+.+... .+......-+++. ...+. .-+.+.+.+.+.. +.++...+.|..+|
T Consensus 390 k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~-~~i~~~l~~~l~~~~~~~W~~~EaaL~~l 467 (980)
T 3ibv_A 390 KMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMY-SAITSSLSTAATLSPENSWQLIEFALYET 467 (980)
T ss_dssp TTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHH-HHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 11110000000 0 0 00111111 2222211111111 11000 0112223334421 12578888888888
Q ss_pred hhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHhhhc-----cCChh
Q 002999 667 KNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVDLLA-----EEDTN 741 (859)
Q Consensus 667 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~-----~~~~~ 741 (859)
+.++.......... .+ ... . -...++.|+.++. .+.+.
T Consensus 468 ~~iaE~i~~~~~~~-~~----------------~~~---------------~-----lp~l~~ll~~ll~s~i~~~~hp~ 510 (980)
T 3ibv_A 468 YIFGEGLRGPDAFF-NE----------------VDK---------------S-----PTVLSQILALVTTSQVCRHPHPL 510 (980)
T ss_dssp HHTTTTCCSGGGTB-CS----------------SSC---------------C-----BCHHHHHHHHHHHSSTTTCCCHH
T ss_pred HHHHhhcccccccc-Cc----------------ccc---------------h-----hHHHHHHHHHHHhCCCCCCCCHH
Confidence 88876532211100 00 000 0 0123466667766 67889
Q ss_pred HHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhh-----cCchhHHHHHHHHHHHHHh
Q 002999 742 VEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTE-----VRPGLLQERTVWMLERVLR 802 (859)
Q Consensus 742 v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~l~~~~~ 802 (859)
|+..+...++.+... +.. ...-++++++.+-+ +++..++.+|..+|.++++
T Consensus 511 V~~~~~~~l~rys~~----~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 511 VQLLYMEILVRYASF----FDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHHHHHHHHHHTGGG----GGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----Hhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 999999999998865 211 12445666666543 4677899999999999985
No 174
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.84 E-value=1.3 Score=46.00 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHh--hCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhh
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLE--EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMT 291 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL 291 (859)
..+..++++++|+..++..+..+.. ...++.+...+.+.+...+..++.++.|++.........-....++..+..++
T Consensus 163 ~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il 242 (304)
T 3ebb_A 163 ANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTIL 242 (304)
T ss_dssp HHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 6799999999999999888887765 23556666666667888999999999999874211111111122455566666
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHh
Q 002999 292 GNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRL 333 (859)
Q Consensus 292 ~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL 333 (859)
+...|.+....++.+|.+|...+.....+++.=.+...+.-+
T Consensus 243 ~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~ 284 (304)
T 3ebb_A 243 EVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKY 284 (304)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGG
T ss_pred hccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHH
Confidence 656788999999999999997765555555553444444444
No 175
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=93.68 E-value=0.029 Score=57.94 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=38.6
Q ss_pred ccCcccccccCC----Cee----cCCCchhcHHHHHHHHHhcccCCC-----CCCCCCCCcccC
Q 002999 77 FLCPLTKQVMKE----PVV----LESAQAYERKAIEYWFERCLEDGR-----DPTCPVTGQVLK 127 (859)
Q Consensus 77 ~~cpi~~~~m~d----Pv~----~~~g~t~~r~~I~~~~~~~~~~~~-----~~~cP~t~~~l~ 127 (859)
..|+||...+.+ |-. ..|||.|-..||.+|+.+..+... ...||.|+++++
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 459999999887 532 479999999999999987321110 146999999875
No 176
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.27 E-value=0.047 Score=57.24 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=50.8
Q ss_pred cccCcccccccCCCe-ecCCCch--hcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCCcchhhhHhHHH
Q 002999 76 NFLCPLTKQVMKEPV-VLESAQA--YERKAIEYWFERCLEDGRDPTCPVTGQVLKSLELKPNIGLAGAIE 142 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv-~~~~g~t--~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~I~ 142 (859)
.+.|||++..|+.|+ -..|.|. ||...+.++..+ ...-.||+|+.++...+|..+.-+.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~----~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK----KPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH----SCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh----CCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 489999999999999 5689987 999998888776 22568999999888888887765554443
No 177
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.75 E-value=2.7 Score=42.99 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=112.4
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHhcccCc---chHHHHH-h-hCchHHHHHHhcCCCHHHHHHHHHHHHHhccChh--
Q 002999 200 IVKLLKSSSKSVGTILRSKALMALLSMAKDE---ESKKIML-E-EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEA-- 272 (859)
Q Consensus 200 Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~---~~r~~i~-~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-- 272 (859)
|-+-|.+.+= ..|..|+..|..+.... ....... . ....+.+-+.+...+..++..++.+|..+...-.
T Consensus 14 l~e~l~sk~W----K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 14 LEERLTYKLW----KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHHHTTCSSH----HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHhcccCcH----HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 3345555544 77888888777665431 1111111 1 2345566678888889999999999988865311
Q ss_pred ---hhhHhhhhhChHHHHHH-hhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccCChHHHHHHHHHH
Q 002999 273 ---YCKSVASEKGALVLLSS-MTGNLELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLV 348 (859)
Q Consensus 273 ---~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L 348 (859)
...........++.|+. .|. +..+.++..+..++..++........+ ++.++..+.+.++.++..+...|
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccCHHHHHHHHHHH
Confidence 11111111346777775 466 677788888888887776433222222 34566777889999999999888
Q ss_pred HHhcCCC----ccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCC
Q 002999 349 GKLTLTN----SCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGL 392 (859)
Q Consensus 349 ~~la~~~----~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~ 392 (859)
.++...- -+-.......++.+..+|. ++.+|..|..++..+-..
T Consensus 164 ~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8765321 1111122233456777777 899999999999888654
No 178
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.51 E-value=7.2 Score=41.85 Aligned_cols=191 Identities=17% Similarity=0.166 Sum_probs=111.8
Q ss_pred cHHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcc-hhHHHhcCcHHHHHHHHhcC----CC---CcchHHHHHHHHHH
Q 002999 152 QVSTVVETLRKENPEVDGLDKALDIVFKISEEHPSN-RYRVRNAGVVLLIVKLLKSS----SK---SVGTILRSKALMAL 223 (859)
Q Consensus 152 ~i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~-r~~i~~~g~i~~Lv~lL~~~----~~---~~~~~~~~~al~~L 223 (859)
.+...++.|.+...+. ..-+.+..|+.--..++.. -..+. .+|+..|+..|..- .. ..+...+..++.||
T Consensus 67 sP~~yi~~L~~~~~~~-kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CL 144 (383)
T 3eg5_B 67 SAMMYIQELRSGLRDM-HLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCL 144 (383)
T ss_dssp CHHHHHHHHTTTCCHH-HHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccch-hHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 3555566666543221 1112444454433333332 23344 67888898888531 10 11237788999999
Q ss_pred HhcccCcchHHHHH-hhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHH
Q 002999 224 LSMAKDEESKKIML-EEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNL 302 (859)
Q Consensus 224 ~~L~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 302 (859)
..+..+......+. ....+..|+..|.+..+.++..|+.+|..++..++ ..|+.+.++..+.
T Consensus 145 kalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~-------~~gG~~~VL~Al~---------- 207 (383)
T 3eg5_B 145 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ-------PEDMNERVLEAMT---------- 207 (383)
T ss_dssp HHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS-------STTHHHHHHHHHH----------
T ss_pred HHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcC-------cCCcHHHHHHHHH----------
Confidence 99988865555554 46789999999999999999999999888776532 0223333333332
Q ss_pred HHHHHHHhcCCCcChHHHHhcCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCCcc---HHHH----HHhhHHHHHHHhC
Q 002999 303 ADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQ-GSDNVQIEMAFLVGKLTLTNSC---KEHI----ARQCAKVLVELLS 374 (859)
Q Consensus 303 a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~la~~~~~---~~~i----~~~gi~~Lv~lL~ 374 (859)
+.. ...+..-..++|..|.. .+.+.+..+...+-.+....++ |..+ ...|+..++.-|+
T Consensus 208 ------~~~-------~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr 274 (383)
T 3eg5_B 208 ------ERA-------EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELR 274 (383)
T ss_dssp ------HHH-------HHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred ------HHH-------HhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHh
Confidence 111 01234567778888875 4566666555555555544433 3333 3567766666666
No 179
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.35 E-value=3.9 Score=45.30 Aligned_cols=218 Identities=12% Similarity=0.043 Sum_probs=128.5
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhhc---------CC-ChHHHH
Q 002999 405 LPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLLS---------GV-SPQCQV 474 (859)
Q Consensus 405 i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL~---------~~-~~~~~~ 474 (859)
...|+.-|. ++.+++|--|+..|+.+........... .-...+..-.|+.+|. +. -..+++
T Consensus 176 cE~L~~DLF---dp~WEiRHGAALGLREILR~hG~GAGR~------~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRE 246 (800)
T 3oc3_A 176 FEQISDNLL---SYEWYKRHGAFLAFAAMFSEIDNGGDIQ------IRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRD 246 (800)
T ss_dssp THHHHHHTT---CSSHHHHHHHHHHHHHHHHHCC----CC------CCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHH
T ss_pred HHHHHHHhc---CcchhhhhHHHHHHHHHHHHhccCCcee------ccccHHHHHHHHHHHHhccccccccCeeeeehHH
Confidence 344555554 3678999889888888765543211100 0111244555555442 11 238999
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhc
Q 002999 475 STLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKIL 554 (859)
Q Consensus 475 ~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~ 554 (859)
.|+.+|..+ .+-... ...+..|+..+..+.-++|..++-.|.++.+.. ..+ .+.++.++..|.
T Consensus 247 TaAQtLGaL-~hLp~e---------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL-----~~L--d~Vv~aVL~GL~ 309 (800)
T 3oc3_A 247 AAAYLLSRI-YPLIGP---------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFV-----EDK--DGLCRKLVSLLS 309 (800)
T ss_dssp HHHHHHHHH-TTTSCS---------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGC-----CCH--HHHHHHHHHHTT
T ss_pred HHHHHHHHH-HhCChh---------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHH-----HHH--HHHHHHHHhhcC
Confidence 999999998 552210 234555555667777899999999998882111 011 266788888888
Q ss_pred cCCCchhHHHHHHHHHHHhcCCcHHHHHHHHhccHHHHHHHHhhhcccccCCCCCCcchhHHhhhhhhhhcccCCChhhH
Q 002999 555 DNQSANCERSDAACILANIQLSEEEVKTLLEATFIKWIVITLQTHKSSFNTRSSRPISNIAEGLLGLLLHFTRSVNPQTL 634 (859)
Q Consensus 555 ~~~~~~~~~~~A~~~L~~L~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~r~~~~~~~~~e~~~~~L~~~~~~~~~~~~ 634 (859)
+.++ +|+..||.+|..++. ...+..+ +..+-++|.+... . +.... -....+..|..+...
T Consensus 310 D~DD--DVRAVAAetLiPIA~-p~~l~~L-----L~iLWd~L~~LDD--L---SASTg-SVMdLLAkL~s~p~~------ 369 (800)
T 3oc3_A 310 SPDE--DIKLLSAELLCHFPI-TDSLDLV-----LEKCWKNIESEEL--I---SVSKT-SNLSLLTKIYRENPE------ 369 (800)
T ss_dssp CSSH--HHHHHHHHHHTTSCC-SSTHHHH-----HHHHHHHHHTCCS--C---CTTHH-HHHHHHHHHHHHCTT------
T ss_pred Cccc--HHHHHHHHHhhhhcc-hhhHHHH-----HHHHHHHhhhhcc--c---chhhH-HHHHHHHHHHcCCcc------
Confidence 8887 999999999999983 2222111 1222234443211 1 01111 123334444444321
Q ss_pred HHHHhcCchHHHHHhhcCCChHHHHHHHHHHhhhhh
Q 002999 635 GMVREQRLMTIFRDQLSFPSKARVKQLAAHGLKNLS 670 (859)
Q Consensus 635 ~~i~~~~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 670 (859)
...+...+|.|+-+|.+. -+.||..+..+|..+.
T Consensus 370 -a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 370 -LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS 403 (800)
T ss_dssp -CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC
T ss_pred -cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH
Confidence 011237899999999996 8999999999887765
No 180
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.95 E-value=3 Score=43.25 Aligned_cols=171 Identities=16% Similarity=0.062 Sum_probs=96.7
Q ss_pred HHHHHHHHHhccChhhhhHhhhhhC---hHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHHHHhc--CChHHHHHH
Q 002999 258 EYAVKLLLEFCIDEAYCKSVASEKG---ALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQPLAAA--GRFEPLINR 332 (859)
Q Consensus 258 ~~A~~~L~~Ls~~~~~~~~i~~~~g---~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~--G~i~~Lv~l 332 (859)
--++.+++-+..++.....+..+.+ .+..+...+.....+..+.-++++++|+-.++..+..+... ..++.+...
T Consensus 120 fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~ 199 (304)
T 3ebb_A 120 FPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIEL 199 (304)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333322111 22233444443445666888999999999988887776642 233334444
Q ss_pred hccCChHHHHHHHHHHHHhcCCCc--cHHHHHHhhHHHHHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHH-cCcHH
Q 002999 333 LCQGSDNVQIEMAFLVGKLTLTNS--CKEHIARQCAKVLVELLS---KPAGRAASLKALYNLSGLDDNATILVD-SALLP 406 (859)
Q Consensus 333 L~~~~~~~~~~aa~~L~~la~~~~--~~~~i~~~gi~~Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~G~i~ 406 (859)
+.+.+..++..++..+.|++.... ....-.......+..++. +.+....++.||.+|...+.....+.+ .|+..
T Consensus 200 ~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~ 279 (304)
T 3ebb_A 200 KSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDS 279 (304)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred hcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHH
Confidence 455688999999999999986321 110011112344555565 888999999999999987644444433 35444
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHH
Q 002999 407 ALTDILFKSHDASPELKELAAATI 430 (859)
Q Consensus 407 ~Lv~lL~~~~~~~~~~~~~a~~~L 430 (859)
.+-++... + .+.++.+.|..+|
T Consensus 280 ~v~~~~~~-~-~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 280 QIKKYSSV-S-EPAKVSECCRFIL 301 (304)
T ss_dssp HGGGGGGC-C-SSHHHHHHHHHHH
T ss_pred HHHHHHhC-C-CchhHHHHHHHHH
Confidence 43333322 2 3456665554443
No 181
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.55 E-value=1.6 Score=44.80 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC---c--ch-HHHHHhhCchHHHHH-HhcCCCHHHHHHHHHHHHHhcc
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKD---E--ES-KKIMLEEGVTKSVIH-SLIGNSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~---~--~~-r~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~ 269 (859)
++.+-+.++..+. .++..++.+|..++.. . .+ +....-...++.|+. .|.+....++..|..++..+..
T Consensus 57 ~~~lkk~l~DsN~----~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 57 PTLFAQYITDSNV----VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp THHHHHHTTCSSH----HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchH----HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 4556667776666 8999999999888754 1 11 112223456777775 4777888888888888877754
Q ss_pred ChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC--Cc--ChHHHHhcCChHHHHHHhccCChHHHHHHH
Q 002999 270 DEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI--EE--IVQPLAAAGRFEPLINRLCQGSDNVQIEMA 345 (859)
Q Consensus 270 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~--~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa 345 (859)
..... .-.++.++..+. +.+|.++..++..|..+... .. +....+ ..+++.+..+|.+.++.||..|.
T Consensus 133 ~~~~~------~~~~e~l~~~l~-~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~ 204 (278)
T 4ffb_C 133 LDTSI------TQSVELVIPFFE-KKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTM 204 (278)
T ss_dssp TSSSS------HHHHHHHGGGGG-CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHH
T ss_pred hcCcH------HHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHH
Confidence 32111 124566677777 88999999988888877532 11 111111 12455677888999999999999
Q ss_pred HHHHHhc
Q 002999 346 FLVGKLT 352 (859)
Q Consensus 346 ~~L~~la 352 (859)
.++..+-
T Consensus 205 ~l~~~ly 211 (278)
T 4ffb_C 205 NLIVEIY 211 (278)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 182
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.86 E-value=11 Score=38.93 Aligned_cols=194 Identities=11% Similarity=0.051 Sum_probs=139.4
Q ss_pred HHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC-cch----HHHHHhhCchHHHHHHh-c-CCCHHHHHHHHHH
Q 002999 191 VRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD-EES----KKIMLEEGVTKSVIHSL-I-GNSEKEKEYAVKL 263 (859)
Q Consensus 191 i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~-~~~----r~~i~~~g~i~~Lv~lL-~-~~~~~~~~~A~~~ 263 (859)
+...+.+..|+..|..=+- +.|..+..+..++... ... -+.+.. - |.++..| . .++++..-.+=..
T Consensus 74 i~~~dll~~Li~~l~~L~f----E~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~-peil~~L~~gYe~~diAl~~G~m 146 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDF----EGKKDVAQIFNNILRRQIGTRTPTVEYICT--Q-QNILFMLLKGYESPEIALNCGIM 146 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCH----HHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--C-THHHHHHHHGGGSTTTHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCc----hhhccHHHHHHHHHhcccCCCCchhHHHHc--C-HHHHHHHHHhhccchhHhHHHHH
Confidence 4556888888888887777 8999999988888765 221 223332 1 2333322 2 1345566677778
Q ss_pred HHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcC---ChHHHHHHhccCChH
Q 002999 264 LLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER-IEEIVQPLAAAG---RFEPLINRLCQGSDN 339 (859)
Q Consensus 264 L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G---~i~~Lv~lL~~~~~~ 339 (859)
|++....+..++.+.. .+.+..+.+.+. .++-++...|..++..|-. +..-.......+ .+...-.+|.+++--
T Consensus 147 LRecir~e~la~~iL~-~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYV 224 (341)
T 1upk_A 147 LRECIRHEPLAKIILW-SEQFYDFFRYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYV 224 (341)
T ss_dssp HHHHHTSHHHHHHHHH-SGGGGHHHHHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHhHHHHHHHhc-cHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcch
Confidence 8899998888777764 567788888888 7888999999999988863 333333333322 355567788999999
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHH-----hhHHHHHHHhC--ChhHHHHHHHHHHHhhCCC
Q 002999 340 VQIEMAFLVGKLTLTNSCKEHIAR-----QCAKVLVELLS--KPAGRAASLKALYNLSGLD 393 (859)
Q Consensus 340 ~~~~aa~~L~~la~~~~~~~~i~~-----~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~ 393 (859)
.+.++...|+.+-.+..|...+.. .....++.+|+ +..++..|..++--...++
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999999999999999777743 23578888998 8889999988877766555
No 183
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.33 E-value=5.3 Score=40.32 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=92.6
Q ss_pred ChhHHHHHHHHHHHhhCC---CcchHHHHH-cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccC
Q 002999 375 KPAGRAASLKALYNLSGL---DDNATILVD-SALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGH 450 (859)
Q Consensus 375 ~~~~~~~a~~aL~~Ls~~---~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 450 (859)
+..+...++..|..+... ...+-.-.+ .-.+|.|+.-+. +....+++.+-.+|..++.-.
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlG---d~k~~vR~~~r~il~~l~~v~------------- 163 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTG---EAKDNMRTSVRDIVNVLSDVV------------- 163 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHHHH-------------
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHHC-------------
Confidence 666666666666665311 111100111 225788887773 355789999988888775421
Q ss_pred cccccchHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCH---HHHHHhhcCCChhHHHHHHHHHHH
Q 002999 451 SMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGI---KYIIQFLEHPEVEHRTYAFRLTRI 527 (859)
Q Consensus 451 ~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i---~~Lv~lL~~~~~~v~~~A~~~L~~ 527 (859)
.-..+++.++.-+++.+...++.++..+..+-...... ...++ +.+..++.+++..||..|..++..
T Consensus 164 --~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 164 --GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233 (266)
T ss_dssp --CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--------ccccccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 11336777888888999999999998888774331110 13478 999999999999999999999988
Q ss_pred HhhhccHHHHHhc
Q 002999 528 LSERIGQDLAYAL 540 (859)
Q Consensus 528 Ls~~~~~~~~~~l 540 (859)
+-...++.+.+.+
T Consensus 234 ~y~~~Gd~v~k~l 246 (266)
T 2of3_A 234 CFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHHTTHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 8655555555444
No 184
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.10 E-value=0.11 Score=44.41 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=29.1
Q ss_pred CcccCcccccc-cCCCee--cCCCchhcHHHHHHHHH
Q 002999 75 KNFLCPLTKQV-MKEPVV--LESAQAYERKAIEYWFE 108 (859)
Q Consensus 75 ~~~~cpi~~~~-m~dPv~--~~~g~t~~r~~I~~~~~ 108 (859)
+++.|+|+.+. ..+||. +.|||+||+.+++.+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 45789999964 889998 89999999999999443
No 185
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=89.51 E-value=6.5 Score=43.58 Aligned_cols=242 Identities=13% Similarity=0.122 Sum_probs=147.5
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHhccChhhh-hH-hhhhhChHHHHHHhhc------CCCC---hHHHHHHHHHHHH
Q 002999 241 VTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYC-KS-VASEKGALVLLSSMTG------NLEL---PALSNLADEVFKK 309 (859)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-~~-i~~~~g~i~~Lv~lL~------~~~~---~~~~~~a~~aL~n 309 (859)
..+.|+.-|-++..++|.-|+..|+++....... .. ........-.|+-++. ...| ..+++.|+.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 5667777777888999999999999986543110 00 0001122223333332 1122 3789999999999
Q ss_pred hcCC-CcChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHH--HHhhHHHHHHHhC--ChhHHHHHHH
Q 002999 310 MERI-EEIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHI--ARQCAKVLVELLS--KPAGRAASLK 384 (859)
Q Consensus 310 L~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i--~~~gi~~Lv~lL~--~~~~~~~a~~ 384 (859)
+ .. ++. ..++..|+..+....=+++--+.-.|..+ +..+ -...++.++.-|+ +.+++..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 53 332 23344444444555555555555556666 1111 2334577888887 8899999999
Q ss_pred HHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHh
Q 002999 385 ALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGL 464 (859)
Q Consensus 385 aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~L 464 (859)
+|.-++ .++.... ++..+...|... ++-..-.......|+.|+..+... -.....||.|...
T Consensus 322 tLiPIA-~p~~l~~-----LL~iLWd~L~~L-DDLSASTgSVMdLLAkL~s~p~~a-----------~~dp~LVPRL~PF 383 (800)
T 3oc3_A 322 LLCHFP-ITDSLDL-----VLEKCWKNIESE-ELISVSKTSNLSLLTKIYRENPEL-----------SIPPERLKDIFPC 383 (800)
T ss_dssp HHTTSC-CSSTHHH-----HHHHHHHHHHTC-CSCCTTHHHHHHHHHHHHHHCTTC-----------CCCSGGGGGTGGG
T ss_pred Hhhhhc-chhhHHH-----HHHHHHHHhhhh-cccchhhHHHHHHHHHHHcCCccc-----------ccChHHHHHHHhh
Confidence 999998 3222222 345666666653 222334455677888888877431 1234789999999
Q ss_pred hcCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHH
Q 002999 465 LSGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTR 526 (859)
Q Consensus 465 L~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~ 526 (859)
+++.-+.++..++.+|..+. .. .+...+ +-.+|-.++++++..+..+..
T Consensus 384 LRHtITSVR~AVL~TL~tfL-~~----~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 384 FTSPVPEVRTSILNMVKNLS-EE----SIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTCSSHHHHHHHHHHTTTCC-CH----HHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHH-hh----hHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999999998887 11 111111 223455667788877766653
No 186
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=88.88 E-value=8.9 Score=37.93 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCCcc-hhHHHhcCcHHHHHHHHhcC----CC---CcchHHHHHHHHHHHhcccCcchHHHHH-hhCchH
Q 002999 173 ALDIVFKISEEHPSN-RYRVRNAGVVLLIVKLLKSS----SK---SVGTILRSKALMALLSMAKDEESKKIML-EEGVTK 243 (859)
Q Consensus 173 al~~L~~l~~~~~~~-r~~i~~~g~i~~Lv~lL~~~----~~---~~~~~~~~~al~~L~~L~~~~~~r~~i~-~~g~i~ 243 (859)
-+..|...-..++.. -..+ ..||+..|+..|..- .. ..+...+..++.||..+..+......+. ..+++.
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~ 99 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 99 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHH
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHH
Confidence 344444333333322 2334 467888888888542 11 1123778899999999988866555554 467899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccChh--h-hhHhh---------hhhChHHHHHHhhcCCCChHHHHHHHHHHHHhc
Q 002999 244 SVIHSLIGNSEKEKEYAVKLLLEFCIDEA--Y-CKSVA---------SEKGALVLLSSMTGNLELPALSNLADEVFKKME 311 (859)
Q Consensus 244 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~-~~~i~---------~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~ 311 (859)
.|+..|.+.++.++..++.+|..++..++ . ...+. .+..-...++..+....+.+.+..++..+-.+.
T Consensus 100 ~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li 179 (233)
T 2f31_A 100 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 179 (233)
T ss_dssp HHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999998887776542 1 11111 112234557777764455566666655555555
Q ss_pred CCCcC---h----HHHHhcCChHHHHHHhc-cCChHHHHH
Q 002999 312 RIEEI---V----QPLAAAGRFEPLINRLC-QGSDNVQIE 343 (859)
Q Consensus 312 ~~~~~---~----~~i~~~G~i~~Lv~lL~-~~~~~~~~~ 343 (859)
..+++ | ..+...| +..+++-|+ ..++++..+
T Consensus 180 ~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 180 TPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp TTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCCHHHHHH
Confidence 55443 2 2333444 444445553 345544433
No 187
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=88.29 E-value=7.7 Score=38.41 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=89.2
Q ss_pred hCchHHHHHHhcC----C-------CHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHH
Q 002999 239 EGVTKSVIHSLIG----N-------SEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVF 307 (859)
Q Consensus 239 ~g~i~~Lv~lL~~----~-------~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 307 (859)
.+|+..|+.+|.. + +......++.+|+.+.....-...+...++++..|+..|. +.++.++..++..|
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~r~~~leLL 120 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC-TTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 4556666666642 1 3455678889999988877666666667889999999998 89999999999999
Q ss_pred HHhcCCCc--C-hHHHH----------hcCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCCcc---HHHH----HHhhH
Q 002999 308 KKMERIEE--I-VQPLA----------AAGRFEPLINRLCQ-GSDNVQIEMAFLVGKLTLTNSC---KEHI----ARQCA 366 (859)
Q Consensus 308 ~nL~~~~~--~-~~~i~----------~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~la~~~~~---~~~i----~~~gi 366 (859)
..+|..++ + ...+. +..-..++|+.|.. .+.+.+..+...+-.+..+.++ |..+ ...|+
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 99996543 4 44333 23467778887763 4455555555545445444433 3333 34566
Q ss_pred HHHHHHhC
Q 002999 367 KVLVELLS 374 (859)
Q Consensus 367 ~~Lv~lL~ 374 (859)
..++.-|+
T Consensus 201 ~~il~~l~ 208 (233)
T 2f31_A 201 HQVLQELR 208 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666555
No 188
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.04 E-value=57 Score=39.89 Aligned_cols=211 Identities=13% Similarity=0.108 Sum_probs=125.6
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhc-CCCHHHHHHHHHHHHHhccC------
Q 002999 198 LLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLI-GNSEKEKEYAVKLLLEFCID------ 270 (859)
Q Consensus 198 ~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~------ 270 (859)
..++..+.+++. ..|..|-..|..+-.. .++...+..+|. +.++.+|..|+.+|.+....
T Consensus 19 e~av~~ly~p~~----~~r~~A~~~L~~~q~s---------p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 19 DQVVSTFYQGSG----VQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp HHHHHHHHHCCH----HHHHHHHHHHHHHHHC---------TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHhCCCh----HHHHHHHHHHHHHHcC---------ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 344555555544 5666676666555433 345566666664 45788899999999887553
Q ss_pred hhhhhHhhhhhChHHHHHHhhcCCC-----ChHHHHHHHHHHHHhcCC--CcChHHHHhcCChHHHHHHhccCChHHHHH
Q 002999 271 EAYCKSVASEKGALVLLSSMTGNLE-----LPALSNLADEVFKKMERI--EEIVQPLAAAGRFEPLINRLCQGSDNVQIE 343 (859)
Q Consensus 271 ~~~~~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~~a~~aL~nL~~~--~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 343 (859)
++.+..|- ...+..+.+... .+ .+.++...+.++..+... ++.- .+.++.|+.++.++ +.....
T Consensus 86 ~e~~~~Ir--~~Ll~~l~~~~~-~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W-----p~~l~dL~~~l~~~-~~~~~~ 156 (1023)
T 4hat_C 86 NDHRIGIR--NFVVGMIISMCQ-DDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSSSS-VNVCEN 156 (1023)
T ss_dssp HHHHHHHH--HHHHHHHHHHHH-SHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHTTTC-HHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHhcC-CcccccccHHHHHHHHHHHHHHHHHhChhhc-----hHHHHHHHHHhcCC-HHHHHH
Confidence 34444442 345555555433 11 244556677777777643 2221 24677788888653 344444
Q ss_pred HHHHHHHhcCC------C---cc-HHHHHH---hhHHH----HHHHhC---ChhHHHHHHHHHHHhhCCCcchHHHHHcC
Q 002999 344 MAFLVGKLTLT------N---SC-KEHIAR---QCAKV----LVELLS---KPAGRAASLKALYNLSGLDDNATILVDSA 403 (859)
Q Consensus 344 aa~~L~~la~~------~---~~-~~~i~~---~gi~~----Lv~lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G 403 (859)
....|..+... + .. +..+.+ ..++. +..+|. ++.+...++.+|......-+ -..+.+.+
T Consensus 157 ~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ 235 (1023)
T 4hat_C 157 NMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYETN 235 (1023)
T ss_dssp HHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHSSS
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcchh
Confidence 45555554321 1 11 122211 11333 344444 67788889999998876433 34567788
Q ss_pred cHHHHH-HHHhccCCCCHHHHHHHHHHHHHhhcC
Q 002999 404 LLPALT-DILFKSHDASPELKELAAATIANVVSN 436 (859)
Q Consensus 404 ~i~~Lv-~lL~~~~~~~~~~~~~a~~~L~nL~~~ 436 (859)
.++.+. .+|. .+.++..|+.+|..+...
T Consensus 236 ll~~l~~~~L~-----~~~~r~~A~ecL~eIv~~ 264 (1023)
T 4hat_C 236 ILELLSTKFMT-----SPDTRAITLKCLTEVSNL 264 (1023)
T ss_dssp HHHHHHTHHHH-----SHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcC-----CHHHHHHHHHHHHHHHcc
Confidence 999999 8884 368999999999999863
No 189
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=87.88 E-value=28 Score=36.11 Aligned_cols=229 Identities=13% Similarity=0.096 Sum_probs=156.7
Q ss_pred HHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCc-cHHHHHHh---hHHHHHHHhC---ChhHHHHHHHHHHHhh
Q 002999 318 QPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNS-CKEHIARQ---CAKVLVELLS---KPAGRAASLKALYNLS 390 (859)
Q Consensus 318 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~-~~~~i~~~---gi~~Lv~lL~---~~~~~~~a~~aL~~Ls 390 (859)
..+...+.+..|+..|..-+-+.+..++....++..... ++....+. --..|..+++ ++++.-.+-..|+.+.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 455667888889998988888888888888887765432 22211111 1233333444 7777778888888888
Q ss_pred CCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccc--cchHHHHHHhhcCC
Q 002999 391 GLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQS--ESIVSSLLGLLSGV 468 (859)
Q Consensus 391 ~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~~~i~~Ll~LL~~~ 468 (859)
.+....+.+...+.+-.+.+.+.. +..++-..|..++.-|-......... .+.. ..++..+-.||.++
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~---~~FdiasDAf~TfkelLt~Hk~lvae-------fL~~nyd~Ff~~y~~Ll~S~ 221 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEM---STFDIASDAFATFKDLLTRHKLLSAE-------FLEQHYDRFFSEYEKLLHSE 221 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTC---SSHHHHHHHHHHHHHHHHSSHHHHHH-------HHHHTHHHHHHHHHHHTTCS
T ss_pred HhHHHHHHHhccHHHHHHHHHhcC---CCchHHHHHHHHHHHHHhccHHHHHH-------HHHHhHHHHHHHHHHHhcCC
Confidence 887777888888888888887754 66788888999888775542211100 0111 13566677889999
Q ss_pred ChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHh--hhccHHHHHhcCCC--C
Q 002999 469 SPQCQVSTLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILS--ERIGQDLAYALKPF--D 544 (859)
Q Consensus 469 ~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls--~~~~~~~~~~l~~~--g 544 (859)
+--.+++++..|..+-.+..+..-+...|.+..-+..+..+|++.+..+|..|-..+..+. +..+..+.+-+... .
T Consensus 222 NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~k 301 (341)
T 1upk_A 222 NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAK 301 (341)
T ss_dssp SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHH
T ss_pred cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHH
Confidence 9999999999999998886665555566666677888899999999999999998888776 33445555544432 3
Q ss_pred chHHHHHhhccC
Q 002999 545 KLVLFKDKILDN 556 (859)
Q Consensus 545 ~i~~Lv~lL~~~ 556 (859)
.+..|-.+..+.
T Consensus 302 Ll~fl~~f~~d~ 313 (341)
T 1upk_A 302 LIEFLSKFQNDR 313 (341)
T ss_dssp HHHHHHHTTTTC
T ss_pred HHHHHHhCCCCC
Confidence 344444444433
No 190
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.31 E-value=23 Score=37.88 Aligned_cols=190 Identities=16% Similarity=0.143 Sum_probs=109.2
Q ss_pred HHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcc-hhHHHhcCcHHHHHHHHhcC----CC---CcchHHHHHHHHHHH
Q 002999 153 VSTVVETLRKENPEVDGLDKALDIVFKISEEHPSN-RYRVRNAGVVLLIVKLLKSS----SK---SVGTILRSKALMALL 224 (859)
Q Consensus 153 i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~-r~~i~~~g~i~~Lv~lL~~~----~~---~~~~~~~~~al~~L~ 224 (859)
++..++.|.+..... .+.+.+..|.-.-..++.. -..+. .+|+..|+..|..- .. ..+...+..++.||.
T Consensus 6 P~~yv~~L~~~~~~~-~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLk 83 (386)
T 2bnx_A 6 AMMYIQELRSGLRDM-HLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK 83 (386)
T ss_dssp HHHHHHHHTSCCCHH-HHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchH-HHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 444555666543221 1112344444433333322 23343 57788888887531 11 113377889999999
Q ss_pred hcccCcchHHHH-HhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHH
Q 002999 225 SMAKDEESKKIM-LEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLA 303 (859)
Q Consensus 225 ~L~~~~~~r~~i-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 303 (859)
.+..+......+ ...+++..|+..|.+..+.++..++.+|..++..+.. .|..+.++..+.
T Consensus 84 almN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~-------~G~~~~VL~Al~----------- 145 (386)
T 2bnx_A 84 AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQP-------EDMNERVLEAMT----------- 145 (386)
T ss_dssp HHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSS-------TTHHHHHHHHHH-----------
T ss_pred HHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCC-------CChHHHHHHHHH-----------
Confidence 998886555544 4567899999999998899998998888888764320 121222222222
Q ss_pred HHHHHHhcCCCcChHHHHhcCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCCcc---HHHH----HHhhHHHHHHHhC
Q 002999 304 DEVFKKMERIEEIVQPLAAAGRFEPLINRLC-QGSDNVQIEMAFLVGKLTLTNSC---KEHI----ARQCAKVLVELLS 374 (859)
Q Consensus 304 ~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~la~~~~~---~~~i----~~~gi~~Lv~lL~ 374 (859)
+.. ...+..-..+||..|. +.+.+.+..+...+-.+....++ |..+ ...|+..++.-|+
T Consensus 146 -----~~~-------~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr 212 (386)
T 2bnx_A 146 -----ERA-------EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELR 212 (386)
T ss_dssp -----HHH-------HHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred -----HHH-------HhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHh
Confidence 111 1123456777888886 45566665555555555554433 3333 4567777777666
No 191
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=84.90 E-value=81 Score=38.63 Aligned_cols=213 Identities=10% Similarity=0.147 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhc-CCCHHHHHHHHHHHHHhccC-----
Q 002999 197 VLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLI-GNSEKEKEYAVKLLLEFCID----- 270 (859)
Q Consensus 197 i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~----- 270 (859)
+..++..+.+++. ..|..|-..|..+-.+++. ...+..+|. +.++.++-.|+.+|.+....
T Consensus 30 Le~lv~~ly~p~~----~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L 96 (1073)
T 3gjx_A 30 LDNVVNCLYHGEG----AQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKIL 96 (1073)
T ss_dssp HHHHHHTTTCSSH----HHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHhCCCH----HHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhC
Confidence 3445555555554 7788888888887666543 333334443 35788999999999887653
Q ss_pred -hhhhhHhhhhhChHHHHHHhhcC----CCChHHHHHHHHHHHHhcCC--CcChHHHHhcCChHHHHHHhccCChHHHHH
Q 002999 271 -EAYCKSVASEKGALVLLSSMTGN----LELPALSNLADEVFKKMERI--EEIVQPLAAAGRFEPLINRLCQGSDNVQIE 343 (859)
Q Consensus 271 -~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~~a~~aL~nL~~~--~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 343 (859)
++.+..+- ...+..+.+.-.. ..++.+....+.++..+... ++.- .+.++-++..+.. ++.....
T Consensus 97 ~~e~~~~LR--~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~-~~~~~~~ 168 (1073)
T 3gjx_A 97 PRNQCEGIK--KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRT-SESLCQN 168 (1073)
T ss_dssp CHHHHHHHH--HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHH-CHHHHHH
T ss_pred CHHHHHHHH--HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCC-CHHHHHH
Confidence 34444442 3455555554331 13456677778888888743 2221 2356667777754 3444555
Q ss_pred HHHHHHHhcCC--C-------cc-----HHHHHHhhHHHHHH----HhC---ChhHHHHHHHHHHHhhCCCcchHHHHHc
Q 002999 344 MAFLVGKLTLT--N-------SC-----KEHIARQCAKVLVE----LLS---KPAGRAASLKALYNLSGLDDNATILVDS 402 (859)
Q Consensus 344 aa~~L~~la~~--~-------~~-----~~~i~~~gi~~Lv~----lL~---~~~~~~~a~~aL~~Ls~~~~~~~~i~~~ 402 (859)
....|..+... + .. +..+... .+.++. +|. ++.+...++.+|......-+ -..+++.
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~ 246 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFET 246 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSS
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccc
Confidence 55666665432 1 01 1222221 244444 443 67778888899999877643 3457778
Q ss_pred CcHHHHH-HHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 002999 403 ALLPALT-DILFKSHDASPELKELAAATIANVVSNP 437 (859)
Q Consensus 403 G~i~~Lv-~lL~~~~~~~~~~~~~a~~~L~nL~~~~ 437 (859)
+.++.|+ .+| ..+.++..|+.+|..+....
T Consensus 247 ~ll~~L~~~~L-----~~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 247 KLISTLIYKFL-----NVPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp SHHHHHHHHTS-----SSHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHhc-----CChHHHHHHHHHHHHHHhcc
Confidence 8888774 555 34689999999999998753
No 192
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=84.28 E-value=13 Score=37.44 Aligned_cols=131 Identities=14% Similarity=0.084 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCcccccccccccCccc---ccchHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChhHHH
Q 002999 417 DASPELKELAAATIANVVSNPGCWELASADKLGHSMQ---SESIVSSLLGLLSGVSPQCQVSTLRILCGIASS-PQAAES 492 (859)
Q Consensus 417 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~---~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~-~~~~~~ 492 (859)
+.+..+...++.+|..+...-..... .+. ..-++|.|+.=+.+....+++.+-.+|..++.- +.. .
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y--------~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--~ 167 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTET--------PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--K 167 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTC--------CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--H
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc--------cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--H
Confidence 34667888888888876432111100 122 134678888877777778888777666655432 211 1
Q ss_pred HHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCch---HHHHHhhccCCCchhHHHHHHHH
Q 002999 493 VATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKL---VLFKDKILDNQSANCERSDAACI 569 (859)
Q Consensus 493 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i---~~Lv~lL~~~~~~~~~~~~A~~~ 569 (859)
..+.+..-+.+.+.++|..++..+..+-...+-. ...++ +.+..++.+.+. .++.+|..+
T Consensus 168 ---------v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~------~~~~l~~~~~ia~ll~D~d~--~VR~aAl~~ 230 (266)
T 2of3_A 168 ---------MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS------PLKSLSVEKTVAPFVGDKDV--NVRNAAINV 230 (266)
T ss_dssp ---------HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG------GGGGGCHHHHHGGGGGCSSH--HHHHHHHHH
T ss_pred ---------HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC------ccccccchHHHHHHHcCCCH--HHHHHHHHH
Confidence 2466777889999999999999888886332221 23678 999999999987 999999888
Q ss_pred HHHhc
Q 002999 570 LANIQ 574 (859)
Q Consensus 570 L~~L~ 574 (859)
+..+-
T Consensus 231 lve~y 235 (266)
T 2of3_A 231 LVACF 235 (266)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87553
No 193
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=83.83 E-value=6.5 Score=48.22 Aligned_cols=219 Identities=10% Similarity=0.036 Sum_probs=131.5
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-----C
Q 002999 240 GVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERI-----E 314 (859)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~-----~ 314 (859)
..++.++..+.+++.+.+..|-..|..+-.+ +++...+..+|..+.++.++..|+.+|.+.... +
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s----------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH----------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC----------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 3466777777777888888888888777554 445566666777567889999999999998642 2
Q ss_pred cChHHHHhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCCC--ccHHHHHHhhHHHHHHHhC-ChhHHHHHHHHH
Q 002999 315 EIVQPLAAAGRFEPLINRLCQ-----GSDNVQIEMAFLVGKLTLTN--SCKEHIARQCAKVLVELLS-KPAGRAASLKAL 386 (859)
Q Consensus 315 ~~~~~i~~~G~i~~Lv~lL~~-----~~~~~~~~aa~~L~~la~~~--~~~~~i~~~gi~~Lv~lL~-~~~~~~~a~~aL 386 (859)
.....-++...+..+...-.. .++.+....+.+++.++..+ +.. ...++-++++++ ++......+.+|
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W----p~fi~dLv~~~~~~~~~~~~~L~IL 173 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW----PTFISDIVGASRTSESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc----cHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 233333343444444443222 23556667777777766422 110 112355556665 666666677777
Q ss_pred HHhhCC--C-------cc-----hHHHHHc--CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccC
Q 002999 387 YNLSGL--D-------DN-----ATILVDS--ALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGH 450 (859)
Q Consensus 387 ~~Ls~~--~-------~~-----~~~i~~~--G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 450 (859)
..|+.. . .. ++.+.+. .+++.+..+|.. ..+..+...++.+|..+...-+-.
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~--~~~~~lv~~~L~~L~~~~sWI~i~---------- 241 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMEN--SQNAPLVHATLETLLRFLNWIPLG---------- 241 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTTSCTH----------
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHhcCHH----------
Confidence 777643 0 01 1223332 223333344433 245677888889999887754321
Q ss_pred cccccchHHHH-HHhhcCCChHHHHHHHHHHHHhccC
Q 002999 451 SMQSESIVSSL-LGLLSGVSPQCQVSTLRILCGIASS 486 (859)
Q Consensus 451 ~l~~~~~i~~L-l~LL~~~~~~~~~~a~~aL~~La~~ 486 (859)
.+.+.+.++.| ..+| .+++++..|+.+|+.+...
T Consensus 242 ~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 242 YIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 35567777777 3655 4678999999999998764
No 194
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=83.04 E-value=0.76 Score=37.85 Aligned_cols=51 Identities=14% Similarity=0.302 Sum_probs=40.7
Q ss_pred CcccCcccccccCCCeecC-C-C----chhcHHHHHHHHHhcccCCCCCCCCCCCcccCCCCC
Q 002999 75 KNFLCPLTKQVMKEPVVLE-S-A----QAYERKAIEYWFERCLEDGRDPTCPVTGQVLKSLEL 131 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~~-~-g----~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~~~l 131 (859)
+.+.||||.++-+.=|-+. + | .-||..++.+.... ...=|++|+|++....
T Consensus 26 e~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~------~~~HPLSREpit~sMI 82 (102)
T 2kkx_A 26 EAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGE------GLPHPLTREPITASII 82 (102)
T ss_dssp GGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHH------TCCCTTTCCCCCTTTE
T ss_pred HHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhc------CCCCCCccCCCCHhhE
Confidence 6799999999999888542 2 2 35999999999988 4688999999876544
No 195
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.79 E-value=6.3 Score=42.89 Aligned_cols=120 Identities=17% Similarity=0.225 Sum_probs=89.0
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcchhhhcCCchHHHh
Q 002999 654 SKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLCLLKSNCIKPLVD 733 (859)
Q Consensus 654 ~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ 733 (859)
|++..|+.||.-+..+..+-+.+ ...||..+++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l-----------------------------------------------~~~Ai~a~lD 72 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPEL-----------------------------------------------ADSAINAQLD 72 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGG-----------------------------------------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhh-----------------------------------------------HHHHHHHHHH
Confidence 58999999999998877653332 3457999999
Q ss_pred hhccCChhHHHHHHHHHHhhhhccCcchhhHHHHHHhcCChHHHHHHhhhcCchhHHHHHHHHHHHHHhccccccccccc
Q 002999 734 LLAEEDTNVEIAAVEALSTLIIDTSKNFKRGVDELEREGALDAVVDLFTEVRPGLLQERTVWMLERVLRVEGHSHRYSLN 813 (859)
Q Consensus 734 lL~~~~~~v~~~A~~aL~~L~~d~~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 813 (859)
|.+++|..|+..|+..|-.+..+ +.+. ..++.|.++|++ .++.-....-++|-.+++.. ..
T Consensus 73 LcEDed~~IR~qaik~Lp~~ck~--~~i~---------kiaDvL~QlLqt-dd~~E~~~V~~sL~sllk~D-------pk 133 (507)
T 3u0r_A 73 LCEDEDVSIRRQAIKELPQFATG--ENLP---------RVADILTQLLQT-DDSAEFNLVNNALLSIFKMD-------AK 133 (507)
T ss_dssp HHTCSSHHHHHHHHHHGGGGCCT--TCHH---------HHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHC-------HH
T ss_pred HHhcccHHHHHHHHHhhHHHhhh--hhhh---------hHHHHHHHHHhc-cchHHHHHHHHHHHHHHhcC-------hH
Confidence 99999999999999999999976 2221 234678899984 77777777788888888643 11
Q ss_pred hhhHHHHHHHhhcCChhhHHHHHHHHH
Q 002999 814 QSLVRALVEAFKHGNANAKRHAQEALT 840 (859)
Q Consensus 814 ~~~~~~Lv~ll~~~~~~~~~~A~~~L~ 840 (859)
+ ....|-.-+..|+..+|+...+-|+
T Consensus 134 ~-tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 134 G-TLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp H-HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHcccchHHHHHHHHHHH
Confidence 1 2245555556688999998888775
No 196
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=80.83 E-value=30 Score=42.53 Aligned_cols=261 Identities=12% Similarity=0.117 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhcCCcc--hhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHH----HHhhC---ch
Q 002999 172 KALDIVFKISEEHPSN--RYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKI----MLEEG---VT 242 (859)
Q Consensus 172 ~al~~L~~l~~~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~----i~~~g---~i 242 (859)
+....|+.++..+... .... ..+-.|+.+|+.-+. +.......- +...+..|.+ +...| ++
T Consensus 289 ~~~e~lk~L~~~~~~~v~~~~~---~~f~~Lv~~lR~~~~----e~L~~l~~~---~~~~~~~r~~~lDal~~aGT~~a~ 358 (1056)
T 1lsh_A 289 EIHTVLKHLVENNQLSVHEDAP---AKFLRLTAFLRNVDA----GVLQSIWHK---LHQQKDYRRWILDAVPAMATSEAL 358 (1056)
T ss_dssp HHHHHHHHHHHHCSSSCCTTHH---HHHHHHHHHHTTSCH----HHHHHHHHH---HTTSHHHHHHHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHhccccccCcchH---HHHHHHHHHHhcCCH----HHHHHHHHH---HhccHHHHHHHHHHhHhcCCHHHH
Confidence 3455566666643222 1111 123346677776554 322222222 2222333443 33455 45
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcC---CCChHHHHHHHHHHHHh----cCCCc
Q 002999 243 KSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGN---LELPALSNLADEVFKKM----ERIEE 315 (859)
Q Consensus 243 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~~a~~aL~nL----~~~~~ 315 (859)
..+...+.++.....+ |+.+|..+..... -+...+..+..++.. ..++.++..+.-++.+| |....
T Consensus 359 ~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~------Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~ 431 (1056)
T 1lsh_A 359 LFLKRTLASEQLTSAE-ATQIVASTLSNQQ------ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTV 431 (1056)
T ss_dssp HHHHHHHHTTCSCHHH-HHHHHHHHHHTCC------CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCCHHH-HHHHHHHhhccCC------CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCC
Confidence 5666666665432222 4444332221110 013355666667661 13556666666666555 43322
Q ss_pred ChHHHHhcCChHHHHHHh----ccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---------ChhHHHHH
Q 002999 316 IVQPLAAAGRFEPLINRL----CQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---------KPAGRAAS 382 (859)
Q Consensus 316 ~~~~i~~~G~i~~Lv~lL----~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---------~~~~~~~a 382 (859)
.+ ....++++.+.| ..++.+.+..+..+|+|+... ..++.|..++. ...++..|
T Consensus 432 ~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aA 498 (1056)
T 1lsh_A 432 SC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEA 498 (1056)
T ss_dssp SC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHH
T ss_pred CC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---------hHHHHHHHhhcCccccccccchHHHHHH
Confidence 22 112355555544 566777788888899988763 24566666652 23577889
Q ss_pred HHHHHHhhCCCcchHHHHHcCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHH
Q 002999 383 LKALYNLSGLDDNATILVDSALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLL 462 (859)
Q Consensus 383 ~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll 462 (859)
++||.+++...+.. +-+.|+.+..+ ...+.++|..|..+|.. .++ . ...+..+.
T Consensus 499 i~ALr~~~~~~p~~-------v~~il~~i~~n-~~e~~EvRiaA~~~Lm~--t~P-~---------------~~~l~~ia 552 (1056)
T 1lsh_A 499 IMALRNIAKRDPRK-------VQEIVLPIFLN-VAIKSELRIRSCIVFFE--SKP-S---------------VALVSMVA 552 (1056)
T ss_dssp HHTTTTGGGTCHHH-------HHHHHHHHHHC-TTSCHHHHHHHHHHHHH--TCC-C---------------HHHHHHHH
T ss_pred HHHHHHhhhhchHH-------HHHHHHHHhcC-CCCChHHHHHHHHHHHH--HCc-C---------------HHHHHHHH
Confidence 99999997543211 23567777765 34567999888888863 222 1 23466777
Q ss_pred HhhcC-CChHHHHHHHHHHHHhccCCh
Q 002999 463 GLLSG-VSPQCQVSTLRILCGIASSPQ 488 (859)
Q Consensus 463 ~LL~~-~~~~~~~~a~~aL~~La~~~~ 488 (859)
..+.. .+..+.......|.+++....
T Consensus 553 ~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 553 VRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 77765 456777778888888887743
No 197
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=78.43 E-value=34 Score=35.31 Aligned_cols=116 Identities=10% Similarity=0.020 Sum_probs=90.2
Q ss_pred HHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCC
Q 002999 217 SKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLEL 296 (859)
Q Consensus 217 ~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 296 (859)
..+...|.-|-.+.+.-.-++...++..+......++.+..+..+..|...|.....+..-. ...+|.+++.+.-.++
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCC
Confidence 34445555555556667788899999999999999999999999999999988766554332 4578999998885677
Q ss_pred hHHHHHHHHHHHHhcCCCcCh-HHHHhcCChHHHHHHhc
Q 002999 297 PALSNLADEVFKKMERIEEIV-QPLAAAGRFEPLINRLC 334 (859)
Q Consensus 297 ~~~~~~a~~aL~nL~~~~~~~-~~i~~~G~i~~Lv~lL~ 334 (859)
.++.....+.|+|...+..-. ...+..|+|+.|-..+.
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 788899999999999876654 44567799988887763
No 198
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=78.05 E-value=26 Score=36.13 Aligned_cols=127 Identities=9% Similarity=0.048 Sum_probs=89.0
Q ss_pred HHHhcCCCcC-hHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC---ChhHHHHH
Q 002999 307 FKKMERIEEI-VQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS---KPAGRAAS 382 (859)
Q Consensus 307 L~nL~~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~---~~~~~~~a 382 (859)
|.||-.++.| ..-+++..+|..+....+-.+.++.......|-..+-...-...-.+.-.|.+++.++ +.++.-..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L~e~LPFi~~~i~~h~eDdvvYSG 345 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPLENILPFLLRLIEIHPDDEVIYSG 345 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCCTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccccccchHHHHHhccCCCcceEEec
Confidence 4555555554 5679999999999999988888887777776665543222211112345688888887 77899999
Q ss_pred HHHHHHhhCCC-cchHHHHHcCcHHHHHHHHhccC---C-CCHHHHHHHHHHHHHh
Q 002999 383 LKALYNLSGLD-DNATILVDSALLPALTDILFKSH---D-ASPELKELAAATIANV 433 (859)
Q Consensus 383 ~~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~---~-~~~~~~~~a~~~L~nL 433 (859)
.+-|.|...+. ..++..+..|+|+.|-..+...+ + .+-.-+..|+++++|-
T Consensus 346 TGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 346 TGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 99999999888 56777788999999988876521 1 1223455677777664
No 199
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=76.01 E-value=22 Score=38.04 Aligned_cols=137 Identities=12% Similarity=0.100 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHhhCCCcchHHHHH-cCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCC--c-ccccc--cccccC
Q 002999 377 AGRAASLKALYNLSGLDDNATILVD-SALLPALTDILFKSHDASPELKELAAATIANVVSNPG--C-WELAS--ADKLGH 450 (859)
Q Consensus 377 ~~~~~a~~aL~~Ls~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~--~-~~~~~--~~~~~~ 450 (859)
..+..+++||..|..+......+.. ...+..|...|.+ ....++..++.+|..+|..+. + ...+. ++....
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s---~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP---AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCT---TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCC---CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 5567788999999877666665655 4778888888754 557899999999999988764 1 22110 000000
Q ss_pred cccccchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChh---HHHHHHHHhhCCCHHHHHHhhcC-CChhHH
Q 002999 451 SMQSESIVSSLLGLLSG-VSPQCQVSTLRILCGIASSPQA---AESVATHIKSGDGIKYIIQFLEH-PEVEHR 518 (859)
Q Consensus 451 ~l~~~~~i~~Ll~LL~~-~~~~~~~~a~~aL~~La~~~~~---~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~ 518 (859)
..+..-...++..|.. .+.+++..++..+-.+...+.. +-.++..+...|..+.+-. |+. .++++.
T Consensus 212 -~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L~ 282 (383)
T 3eg5_B 212 -MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDMK 282 (383)
T ss_dssp -HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHHH
T ss_pred -hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhHH
Confidence 1122345677888876 4568888877777777665432 3445555556555555544 544 344443
No 200
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=69.35 E-value=70 Score=39.93 Aligned_cols=290 Identities=13% Similarity=0.089 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhc-CCCChHHHHHHHHHHHHhcCC-----CcChHHHHhcCCh
Q 002999 253 SEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTG-NLELPALSNLADEVFKKMERI-----EEIVQPLAAAGRF 326 (859)
Q Consensus 253 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~nL~~~-----~~~~~~i~~~G~i 326 (859)
+...+..|-..|..+-.+++ +...+...|. .+.++.++..|+.+|.|.... ++..+..++...+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~----------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCP----------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCT----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCch----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 56678888888887744321 2233333332 367888999999999998632 2222333333333
Q ss_pred HHHHHHhc---cCChHHHHHHHHHHHHhcCCC--ccHHHHHHhhHHHHHHHhC-ChhHHHHHHHHHHHhhCC---C----
Q 002999 327 EPLINRLC---QGSDNVQIEMAFLVGKLTLTN--SCKEHIARQCAKVLVELLS-KPAGRAASLKALYNLSGL---D---- 393 (859)
Q Consensus 327 ~~Lv~lL~---~~~~~~~~~aa~~L~~la~~~--~~~~~i~~~gi~~Lv~lL~-~~~~~~~a~~aL~~Ls~~---~---- 393 (859)
..+...-. ..+..++...+.++..++..+ +.. ...++.|++++. ++..++.++.+|..|+.. .
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~~~~~ 171 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLP 171 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCCSC
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccchH
Confidence 33332211 145778888888888776532 111 123466777777 666778888888888642 1
Q ss_pred cchH-----HHHHc--CcHHHHHHHHhccC----------------CCCHHHHHHHHHHHHHhhcCCCcccccccccccC
Q 002999 394 DNAT-----ILVDS--ALLPALTDILFKSH----------------DASPELKELAAATIANVVSNPGCWELASADKLGH 450 (859)
Q Consensus 394 ~~~~-----~i~~~--G~i~~Lv~lL~~~~----------------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 450 (859)
..+. .+.+. .+++.+..+|.... .....+...++.++.+... |... .
T Consensus 172 ~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~----Wi~~------~ 241 (1204)
T 3a6p_A 172 PQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID----WVSM------S 241 (1204)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT----TSCH------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh----ccCH------H
Confidence 1111 12221 22333444443210 0112355566666654433 2211 0
Q ss_pred ccccc--chHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHh--hCCCHHHHHHhhc--------CCChhHH
Q 002999 451 SMQSE--SIVSSLLGLLSGVSPQCQVSTLRILCGIASSPQAAESVATHIK--SGDGIKYIIQFLE--------HPEVEHR 518 (859)
Q Consensus 451 ~l~~~--~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~--~~g~i~~Lv~lL~--------~~~~~v~ 518 (859)
.+... ..++.++.++. +++++..|+.+|..+........+....+. ...++..++..+. ..+.+..
T Consensus 242 ~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~ 319 (1204)
T 3a6p_A 242 HITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFL 319 (1204)
T ss_dssp HHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHH
T ss_pred HHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHH
Confidence 12222 36777776655 467899999999999875421111111111 0112334555432 1123555
Q ss_pred HHHHHHHHHHhhhccHHHHHh-----cCCC--CchHHHHHhhccCCCchhHHHHHHHHHH
Q 002999 519 TYAFRLTRILSERIGQDLAYA-----LKPF--DKLVLFKDKILDNQSANCERSDAACILA 571 (859)
Q Consensus 519 ~~A~~~L~~Ls~~~~~~~~~~-----l~~~--g~i~~Lv~lL~~~~~~~~~~~~A~~~L~ 571 (859)
..-++++..+.... ...... .... +.++.++.+..+++. .+...+...-.
T Consensus 320 k~l~~ll~~lg~~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~--~vs~~~l~fW~ 376 (1204)
T 3a6p_A 320 KRLCQVLCALGNQL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQ--FLRSSTQMTWG 376 (1204)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHhccccccChhHHHHHHHHHHHHHhCccH--HhHHHHHHHHH
Confidence 66666776664211 111011 1111 457778888877643 44444444333
No 201
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=67.69 E-value=58 Score=35.51 Aligned_cols=113 Identities=19% Similarity=0.117 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCC
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGN 252 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~ 252 (859)
|..-|.+..+.-+..... ++..+++++...+. .+|..|++.|-.+|.+ ++-.. ....|+.+|..+
T Consensus 48 aaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~----~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~QlLqtd 112 (507)
T 3u0r_A 48 AAQFIPKFFKHFPELADS-----AINAQLDLCEDEDV----SIRRQAIKELPQFATG-ENLPR-----VADILTQLLQTD 112 (507)
T ss_dssp HHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSH----HHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHHTTCC
T ss_pred HHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH----HHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHHHhcc
Confidence 666677777666655443 45678899888877 8999999999999988 44333 356789999998
Q ss_pred CHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHH
Q 002999 253 SEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKK 309 (859)
Q Consensus 253 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~n 309 (859)
++......-..|..|-..+. .|.+..|..-+. .+++.+++.++..|..
T Consensus 113 d~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~-~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 113 DSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQIL-QGEDIVRERAIKFLST 160 (507)
T ss_dssp CHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHH-HSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 87776666666666644322 345555555555 3567777777666543
No 202
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=66.09 E-value=2.4e+02 Score=34.43 Aligned_cols=203 Identities=13% Similarity=0.154 Sum_probs=109.0
Q ss_pred hChHHHHHHhhcCCCChHHHHHHHHHHHHhcC-CCcChHHHHhcCChHHHHHHhcc----CChHHHHHHHHHHHHh----
Q 002999 281 KGALVLLSSMTGNLELPALSNLADEVFKKMER-IEEIVQPLAAAGRFEPLINRLCQ----GSDNVQIEMAFLVGKL---- 351 (859)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~~~G~i~~Lv~lL~~----~~~~~~~~aa~~L~~l---- 351 (859)
..++..+..++. ++.....+ |+.+|..+.. ...+.. .+..+..++.+ .++.++..+.-+++.|
T Consensus 355 ~~a~~~i~~~i~-~~~l~~~e-a~~~l~~~~~~~~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~ 426 (1056)
T 1lsh_A 355 SEALLFLKRTLA-SEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY 426 (1056)
T ss_dssp HHHHHHHHHHHH-TTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCHHH-HHHHHHHhhccCCCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHH
Confidence 446777777776 34333222 3333332221 112222 23445556643 3455555555555554
Q ss_pred cCCCccH-HHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCcchHHHHHcCcHHHHHHHHhc----cCCCCHHHHH
Q 002999 352 TLTNSCK-EHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDDNATILVDSALLPALTDILFK----SHDASPELKE 424 (859)
Q Consensus 352 a~~~~~~-~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~----~~~~~~~~~~ 424 (859)
|.++..+ ..+.......|.+.+. +..-+..++++|.|+... ..++.|..++.. ..+.+..++.
T Consensus 427 c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~ 496 (1056)
T 1lsh_A 427 CANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQA 496 (1056)
T ss_dssp HTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHH
Confidence 3332221 1111111223333344 666778899999999642 357777777743 1223567888
Q ss_pred HHHHHHHHhhcCCCcccccccccccCcccccchHHHHHHhh--cCCChHHHHHHHHHHHHhccCChhHHHHHHHHhhCCC
Q 002999 425 LAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLLGLL--SGVSPQCQVSTLRILCGIASSPQAAESVATHIKSGDG 502 (859)
Q Consensus 425 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll~LL--~~~~~~~~~~a~~aL~~La~~~~~~~~~~~~i~~~g~ 502 (859)
.|.++|.+++...+ ..+-+.|+.+. ...++++|..|...|... +|.. . -
T Consensus 497 aAi~ALr~~~~~~p----------------~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t--~P~~--~---------~ 547 (1056)
T 1lsh_A 497 EAIMALRNIAKRDP----------------RKVQEIVLPIFLNVAIKSELRIRSCIVFFES--KPSV--A---------L 547 (1056)
T ss_dssp HHHHTTTTGGGTCH----------------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT--CCCH--H---------H
T ss_pred HHHHHHHHhhhhch----------------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH--CcCH--H---------H
Confidence 99999988764321 12345567777 445679998888888654 3321 1 1
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHHHhh
Q 002999 503 IKYIIQFLEH-PEVEHRTYAFRLTRILSE 530 (859)
Q Consensus 503 i~~Lv~lL~~-~~~~v~~~A~~~L~~Ls~ 530 (859)
+..+...+.. ++.+|.......|.++++
T Consensus 548 l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 548 VSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 3455555554 455666666667777763
No 203
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=66.05 E-value=2.5e+02 Score=34.90 Aligned_cols=308 Identities=12% Similarity=0.050 Sum_probs=151.5
Q ss_pred HHHHHhhhhcCCCccchHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHh--cCCCCcchHHHHHHHHHHHhcccC-
Q 002999 153 VSTVVETLRKENPEVDGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLK--SSSKSVGTILRSKALMALLSMAKD- 229 (859)
Q Consensus 153 i~~l~~~L~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~--~~~~~~~~~~~~~al~~L~~L~~~- 229 (859)
+..++..+.+++.+.+...+|-..|..+-...+ +...+...|. +.+. .+|..|+..|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~----------~~~~~~~~L~~~s~~~----~vR~~A~~~Lk~~I~~~ 78 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP----------ICVPCGLRLAEKTQVA----IVRHFGLQILEHVVKFR 78 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT----------THHHHHHHHTSTTSCH----HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch----------HHHHHHHHHHccCCCH----HHHHHHHHHHHHHHHHh
Confidence 333444444433333334457777776644221 2333444443 2333 8899999999886532
Q ss_pred -----cchHHHHHhhCchHHHHHHhcC---CCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHH
Q 002999 230 -----EESKKIMLEEGVTKSVIHSLIG---NSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSN 301 (859)
Q Consensus 230 -----~~~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 301 (859)
++.|..|.+ ..+..+...-.. ....++...+.++..++..+-- . .=+..++.|+.+++ + ++...+
T Consensus 79 W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~---~Wp~ll~~L~~~~~-~-~~~~~e 151 (1204)
T 3a6p_A 79 WNGMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-Q---HWPDMLIELDTLSK-Q-GETQTE 151 (1204)
T ss_dssp GGGSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-T---TCTTHHHHHHHHHH-T-CHHHHH
T ss_pred cccCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-c---cchHHHHHHHHHhc-C-CHHHHH
Confidence 444544432 233333322111 3467778888888888765311 1 12568899999987 4 455677
Q ss_pred HHHHHHHHhcCC---Cc----ChH-----HHHhcCChHHHHHH----hcc-------------------CChHHHHHHHH
Q 002999 302 LADEVFKKMERI---EE----IVQ-----PLAAAGRFEPLINR----LCQ-------------------GSDNVQIEMAF 346 (859)
Q Consensus 302 ~a~~aL~nL~~~---~~----~~~-----~i~~~G~i~~Lv~l----L~~-------------------~~~~~~~~aa~ 346 (859)
.++.+|..|+.. .+ .+. .+.+. ++.++.+ |.. .+..+...+..
T Consensus 152 ~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~ 229 (1204)
T 3a6p_A 152 LVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALN 229 (1204)
T ss_dssp HHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHH
Confidence 788888888632 11 111 12221 3444333 322 11223334444
Q ss_pred HHHHhcCCCccHHHHHHh--hHHHHHHHhCChhHHHHHHHHHHHhhCCCcc---hHHHHHc---CcHHHHHHHHhcc---
Q 002999 347 LVGKLTLTNSCKEHIARQ--CAKVLVELLSKPAGRAASLKALYNLSGLDDN---ATILVDS---ALLPALTDILFKS--- 415 (859)
Q Consensus 347 ~L~~la~~~~~~~~i~~~--gi~~Lv~lL~~~~~~~~a~~aL~~Ls~~~~~---~~~i~~~---G~i~~Lv~lL~~~--- 415 (859)
++.+...--+....+... -++.+..++.++.++..|+.||..+...... +..++.. ..+..++..+...
T Consensus 230 ~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 230 TLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp HHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 444333211111112111 2355555556889999999999999975521 1122221 1133444444211
Q ss_pred --CCCCHHHHHHHHHHHHHhhcCCCccccccccc--ccCcccccchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 002999 416 --HDASPELKELAAATIANVVSNPGCWELASADK--LGHSMQSESIVSSLLGLLSGVSPQCQVSTLRILCGIASS 486 (859)
Q Consensus 416 --~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~--~~~~l~~~~~i~~Ll~LL~~~~~~~~~~a~~aL~~La~~ 486 (859)
.+.+....+.-+.++..+... ........ ....-.-...++.++.+..+.+..+-..++..-..+.++
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 111234555666666665421 00000000 000011135677778777777666666655544445443
No 204
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=65.53 E-value=37 Score=34.64 Aligned_cols=79 Identities=19% Similarity=0.134 Sum_probs=53.2
Q ss_pred hHHHHHHhcCC------CHHHHHHHHHHHHHhccChhhhhHhhh-hhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCC-
Q 002999 242 TKSVIHSLIGN------SEKEKEYAVKLLLEFCIDEAYCKSVAS-EKGALVLLSSMTGNLELPALSNLADEVFKKMERI- 313 (859)
Q Consensus 242 i~~Lv~lL~~~------~~~~~~~A~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~- 313 (859)
...+..+++++ +.+..+.|+..|..+|.+.+.--+|.. +...+..|+ +.. ..++.+++.|+.++...-.+
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~-~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNE-NLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCT-TSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhc-cCChhHHHHHHHHHHHHHccC
Confidence 34445566665 345678999999999999998888875 444444444 333 45677889999998888765
Q ss_pred CcChHHHHh
Q 002999 314 EEIVQPLAA 322 (859)
Q Consensus 314 ~~~~~~i~~ 322 (859)
|.....+.+
T Consensus 102 P~Al~~V~~ 110 (315)
T 3qml_C 102 PPVVEFINE 110 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 443444444
No 205
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=64.31 E-value=59 Score=31.87 Aligned_cols=130 Identities=13% Similarity=0.055 Sum_probs=80.8
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhcccCcchHHHHHhhCchHHHHH-HhcCCCHHHHHHHHHHHHHhcc--Chhhhh
Q 002999 199 LIVKLLKSSSKSVGTILRSKALMALLSMAKDEESKKIMLEEGVTKSVIH-SLIGNSEKEKEYAVKLLLEFCI--DEAYCK 275 (859)
Q Consensus 199 ~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~--~~~~~~ 275 (859)
..-.+..+... .+|..|+..|..+ .. ....++.+.. +-..++-.+++.++.++..++. +++
T Consensus 75 la~~L~~~~~d----eVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 75 LAFLAYQSDVY----QVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHTCSSH----HHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHhCcch----HHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 34445555544 8999999988877 21 1224555555 4445678899999999998864 222
Q ss_pred HhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcCCC---cChHHHHhcCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 002999 276 SVASEKGALVLLSSMTGNLELPALSNLADEVFKKMERIE---EIVQPLAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLT 352 (859)
Q Consensus 276 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~---~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la 352 (859)
..++.+...+. ++++.++..|...++--+..+ .+... ++|.|-.+..+.+.-++...++.|..++
T Consensus 139 ------~~l~~~~~W~~-d~n~~VRR~Ase~~rpW~~~~~~k~dp~~-----ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 139 ------KALPIIDEWLK-SSNLHTRRAATEGLRIWTNRPYFKENPNE-----AIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp ------TTHHHHHHHHH-CSSHHHHHHHHHHTCSGGGSTTTTTCHHH-----HHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhc-CCCHHHHHHHHHhhHHHhccchhhcCHHH-----HHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 25677788888 899999999888765433221 11111 2333333445566666777777777666
Q ss_pred CCCc
Q 002999 353 LTNS 356 (859)
Q Consensus 353 ~~~~ 356 (859)
..+.
T Consensus 207 K~~P 210 (240)
T 3l9t_A 207 KKFP 210 (240)
T ss_dssp TTCH
T ss_pred hhCH
Confidence 6553
No 206
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=63.69 E-value=2.5 Score=31.97 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=26.5
Q ss_pred CCCCCCCCcccCCCCCc-c-hhhh-HhHHHHHHHhccc
Q 002999 116 DPTCPVTGQVLKSLELK-P-NIGL-AGAIEEWVNRNVE 150 (859)
Q Consensus 116 ~~~cP~t~~~l~~~~l~-p-n~~l-~~~I~~w~~~~~~ 150 (859)
+..||+|++.+.+.-+. + .+.. |+.|++|..++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~ 40 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN 40 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSB
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCC
Confidence 57899999999876554 3 4455 8899999987754
No 207
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=60.05 E-value=89 Score=30.61 Aligned_cols=134 Identities=12% Similarity=0.029 Sum_probs=87.5
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcCCCChHHHHHHHHHHHHhcC--CCcChHH
Q 002999 242 TKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGNLELPALSNLADEVFKKMER--IEEIVQP 319 (859)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~--~~~~~~~ 319 (859)
++....+.+++..++|..|+.+|..+ . . ....++.+...+...++=.+++.++.++..++. .++ +
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--~-------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--K-------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-K-- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--T-------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-T--
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--C-------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-H--
Confidence 34444555677788999999988877 2 1 133566676644435667899999999999984 333 1
Q ss_pred HHhcCChHHHHHHhccCChHHHHHHHHHHHHhcCCCccHHHHHHhhHHHHHHHhC--ChhHHHHHHHHHHHhhCCCc
Q 002999 320 LAAAGRFEPLINRLCQGSDNVQIEMAFLVGKLTLTNSCKEHIARQCAKVLVELLS--KPAGRAASLKALYNLSGLDD 394 (859)
Q Consensus 320 i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~la~~~~~~~~i~~~gi~~Lv~lL~--~~~~~~~a~~aL~~Ls~~~~ 394 (859)
.++.+...+.+++..++..++..+.--+....-+ .-.+..++.|-.+.. +.-++++..++|..+|..++
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k-~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK-ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT-TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh-cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 5677888899999999998888754322211000 000112233333443 66789999999999998774
No 208
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=59.17 E-value=1.9 Score=28.21 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=13.4
Q ss_pred CcccCcccccccCCCee
Q 002999 75 KNFLCPLTKQVMKEPVV 91 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~ 91 (859)
+.|+||+|+.-+..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 45999999988877643
No 209
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=58.08 E-value=8.2 Score=38.27 Aligned_cols=48 Identities=10% Similarity=0.324 Sum_probs=36.5
Q ss_pred ccCcccccccCCCeec-CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccCC
Q 002999 77 FLCPLTKQVMKEPVVL-ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLKS 128 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~~ 128 (859)
..|.||.++-.-=+.= .|++.|-+.|+.+|+.. .....||.|+.+.+.
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~----~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS----NAEPRCPHCNDYWPH 229 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTT----CSSCBCTTTCCBCCS
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHh----CCCCCCCCCCCCCCC
Confidence 4599999987743322 38999999999999976 225799999887644
No 210
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=57.69 E-value=55 Score=29.24 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhc
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLI 250 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~ 250 (859)
..-.|.+....++..- ..++..|.+-|+++++ .++..|+..|-.+..+ ..-...|.....+..|+++++
T Consensus 25 ~ileicD~I~~~~~~~-----k~a~rai~Krl~~~n~----~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~ 95 (140)
T 3ldz_A 25 LILDICDKVGQSRTGP-----KDCLRSIMRRVNHKDP----HVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLN 95 (140)
T ss_dssp HHHHHHHHHTTSTTHH-----HHHHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCH-----HHHHHHHHHHHcCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhc
Confidence 4445666555433221 1245567788888887 8899999988888777 444666777778888888888
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q 002999 251 GNSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 251 ~~~~~~~~~A~~~L~~Ls~ 269 (859)
..++.++.....++..-+.
T Consensus 96 ~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 96 KGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 7888899988888877654
No 211
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=55.32 E-value=1.5e+02 Score=30.17 Aligned_cols=148 Identities=10% Similarity=0.034 Sum_probs=87.7
Q ss_pred HHHHHHhcC--CCCcchHHHHHHHHHHHhcccCcchHHHHHh--hCchHHHHHHhcCCCHHHHHHHHHHHHHhccC-hhh
Q 002999 199 LIVKLLKSS--SKSVGTILRSKALMALLSMAKDEESKKIMLE--EGVTKSVIHSLIGNSEKEKEYAVKLLLEFCID-EAY 273 (859)
Q Consensus 199 ~Lv~lL~~~--~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~ 273 (859)
.+..+++++ -...+...-..|+..|-.++++-..-..|.+ -..+..|+ +..+..+..++.|++++...-.+ |+.
T Consensus 26 ~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~A 104 (315)
T 3qml_C 26 EMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPV 104 (315)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHH
Confidence 355666665 1111225678899999999999555555554 33444444 33445677899999999876655 444
Q ss_pred hhHhhh-hhChHHHHHHhhcC---C---CChHHHHHHHHHHHHhcCCCcChHHHHhcCChHHHHHHhccC--ChHHHHHH
Q 002999 274 CKSVAS-EKGALVLLSSMTGN---L---ELPALSNLADEVFKKMERIEEIVQPLAAAGRFEPLINRLCQG--SDNVQIEM 344 (859)
Q Consensus 274 ~~~i~~-~~g~i~~Lv~lL~~---~---~~~~~~~~a~~aL~nL~~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a 344 (859)
.+.|.. .+..+..+..-|.. . ....+++.-+.+|..|..++.. + ...++..|++++... ++.+|..+
T Consensus 105 l~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kv 180 (315)
T 3qml_C 105 VEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQIKV 180 (315)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHHHH
Confidence 433321 23344444433330 1 2335667778888888877521 1 144678888888766 77777777
Q ss_pred HHHHHHh
Q 002999 345 AFLVGKL 351 (859)
Q Consensus 345 a~~L~~l 351 (859)
+..+..+
T Consensus 181 l~li~d~ 187 (315)
T 3qml_C 181 LELISKI 187 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 212
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=52.40 E-value=43 Score=30.32 Aligned_cols=73 Identities=8% Similarity=0.096 Sum_probs=56.4
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC----CCchhHHHHHHHHHHHhc
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN----QSANCERSDAACILANIQ 574 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~----~~~~~~~~~A~~~L~~L~ 574 (859)
++..|..-+++.++.++..|+.+|-.+....+...+..+....++..|++++... .....|+.-...++..-+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 3456667778999999999999999998878888888888888999999999742 111467776766666543
No 213
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=51.26 E-value=77 Score=29.09 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=54.1
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhcC-CCHHHHHHHHHHHHHhcc
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLIG-NSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~ 269 (859)
++..|.+-|++.++ .++..|+..|-.+..+ ......|.....+..|+++++. .++.++..+..++..-+.
T Consensus 53 A~ral~krl~~~n~----~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVP----HVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 34567777888887 8999999999888877 5556677777888888888875 567888888887766554
No 214
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.76 E-value=83 Score=29.13 Aligned_cols=88 Identities=16% Similarity=0.083 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhc
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLI 250 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~ 250 (859)
..-.|.+....++..-. .++..|.+-|++.++ .++..|+..|-.+..+ ......|.....+..|++++.
T Consensus 33 ~ileicD~I~~~~~~~k-----~A~ral~krl~~~n~----~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~ 103 (171)
T 1juq_A 33 YIIGFCDQINKELEGPQ-----IAVRLLAHKIQSPQE----WEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVS 103 (171)
T ss_dssp HHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhc
Confidence 34455555554432211 234567788888888 9999999999999887 556777888888999999986
Q ss_pred C------CCHHHHHHHHHHHHHhcc
Q 002999 251 G------NSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 251 ~------~~~~~~~~A~~~L~~Ls~ 269 (859)
. .+..++..++.++..-+.
T Consensus 104 ~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 104 PKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3 357888888888877654
No 215
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=49.82 E-value=2e+02 Score=28.45 Aligned_cols=88 Identities=9% Similarity=0.076 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHhhCchHHHHHHhcCCCHHHHHHHHHHHHHhccChhhhhHhhhhhChHHHHHHhhcC
Q 002999 214 ILRSKALMALLSMAKDEESKKIMLEEGVTKSVIHSLIGNSEKEKEYAVKLLLEFCIDEAYCKSVASEKGALVLLSSMTGN 293 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~ 293 (859)
+.+...+.-...|+.+.+.. .-...++.++.+-.+.+.++|...+..|.+.+... ..+. ..+++.|..+|+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~---ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---~~l~--~~~l~~L~~Ll~- 100 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE---LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---VELL--PHVINVVSMLLR- 100 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG---GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGGH--HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHccCHh---HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHc-
Confidence 55666666666665552211 11345677777666778899999999999887432 2232 458889999998
Q ss_pred CCChHHHHHHHHHHHHh
Q 002999 294 LELPALSNLADEVFKKM 310 (859)
Q Consensus 294 ~~~~~~~~~a~~aL~nL 310 (859)
.+|+.+.+.+..+..++
T Consensus 101 d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 101 DNSAQVIKRVIQACGSI 117 (257)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78899988887765555
No 216
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=49.20 E-value=1.5e+02 Score=31.49 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=49.0
Q ss_pred CchHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcc
Q 002999 641 RLMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQL 720 (859)
Q Consensus 641 ~~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (859)
+++|.++++-.+. +.++|+..+.-|+........+
T Consensus 63 ~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el-------------------------------------------- 97 (386)
T 3o2t_A 63 NFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIEL-------------------------------------------- 97 (386)
T ss_dssp GGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGG--------------------------------------------
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 5678888888875 8999999988887655321100
Q ss_pred hhhhcCCchHHHhhhccCChhHHHHHHHHHHhhh
Q 002999 721 CLLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLI 754 (859)
Q Consensus 721 ~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 754 (859)
-..+++.|..+|+++|+.|...++.+..++-
T Consensus 98 ---~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 98 ---LLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp ---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1235778888999999999999888887765
No 217
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=48.23 E-value=36 Score=31.35 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=53.4
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHH
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILAN 572 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~ 572 (859)
++..|..-|.+.++.++..|+.+|-.+....+...+..+...+.+..|++++..... ..++..+..++..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~-~~Vk~kil~li~~ 122 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAH-PKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Confidence 345667778899999999999999999877778888888877899999999975333 3666655555543
No 218
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=47.93 E-value=1.7e+02 Score=36.34 Aligned_cols=227 Identities=11% Similarity=0.075 Sum_probs=108.9
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhcCCCcChHH----HH------hcCChHHHHHHh-ccCChHHHHHHHHHHHH-
Q 002999 283 ALVLLSSMTGNLELPALSNLADEVFKKMERIEEIVQP----LA------AAGRFEPLINRL-CQGSDNVQIEMAFLVGK- 350 (859)
Q Consensus 283 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nL~~~~~~~~~----i~------~~G~i~~Lv~lL-~~~~~~~~~~aa~~L~~- 350 (859)
++..|..+|. .++......+.+|.||.-+++.... +. +...+|.+|++| ++.+..-..++...|+.
T Consensus 193 v~~~L~~lL~--~~~~L~~~iLdaLs~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~ 270 (1323)
T 3s4w_B 193 VGKELGELLV--QNTSLTVPILDVFSSLRLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELREN 270 (1323)
T ss_dssp HHHHHHHHHH--HCSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHH
Confidence 5567777776 2556777888888888877644333 22 235688899876 33333323334444443
Q ss_pred hcCCC--------c------cHHHH---------HHhhHHHHHHHhC-----ChhHHHHHHHHHHHhhCCCcchHHHHHc
Q 002999 351 LTLTN--------S------CKEHI---------ARQCAKVLVELLS-----KPAGRAASLKALYNLSGLDDNATILVDS 402 (859)
Q Consensus 351 la~~~--------~------~~~~i---------~~~gi~~Lv~lL~-----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~ 402 (859)
+-... . ++... .+.....++..++ +..+.++-++++.++....+.
T Consensus 271 L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~h------- 343 (1323)
T 3s4w_B 271 LNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAEH------- 343 (1323)
T ss_dssp HHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTC-------
T ss_pred cCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCccccc-------
Confidence 11100 0 00000 0011122444444 778888888888888654332
Q ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCCcccccc---cccccCcccccchHHHHHH----hhcCCChHHHHH
Q 002999 403 ALLPALTDILFKSHDASPELKELAAATIANVVSNPGCWELAS---ADKLGHSMQSESIVSSLLG----LLSGVSPQCQVS 475 (859)
Q Consensus 403 G~i~~Lv~lL~~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~---~~~~~~~l~~~~~i~~Ll~----LL~~~~~~~~~~ 475 (859)
-+++.++-++-.+ .+...+..+-.++.+......-..... ...+. .+-....+.++. ++.+.++.++.-
T Consensus 344 k~~Dl~vLlii~s--~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~--~vL~~~f~siL~La~~Ll~S~~~~v~~F 419 (1323)
T 3s4w_B 344 KSLDVVMLLIIYS--TSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHY--LVLKDICPSILLLAQTLFHSQDQRIILF 419 (1323)
T ss_dssp CTHHHHHHHHHHH--HCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHTSSSHHHHHH
T ss_pred chhHHHHHHHHHc--CCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3444444333221 123456777788877766543221100 00000 011223333333 345556665554
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhCCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 002999 476 TLRILCGIASSPQAAESVATHIKSGDGIKYIIQFLEHPEVEHRTYAFRLTRILS 529 (859)
Q Consensus 476 a~~aL~~La~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls 529 (859)
+...-..+-..-+. -.++. .+..|+..+.+++..-...|+..|..|+
T Consensus 420 g~~lY~~lF~~fd~--~~qqe-----Vl~~Lv~hi~sg~~~eVd~ALdvL~~L~ 466 (1323)
T 3s4w_B 420 GSLLYKYAFKFFDT--YCQQE-----VVGALVTHVCSGTEAEVDTALDVLLELI 466 (1323)
T ss_dssp HHHHHHHHHHSSCH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--hhHHH-----HHHHHHhhhcCCCcHHHHHHHHHHHHHH
Confidence 44433222222111 11222 2456666655555544444777777776
No 219
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=47.93 E-value=1.1e+02 Score=27.66 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhc
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLI 250 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~ 250 (859)
..-.|.+.....+..-. .++..|.+-|.+.++ .++..|+..|-.+..+ ......|.....+..|++++.
T Consensus 31 ~ileicD~I~~~~~~pk-----~a~ral~krl~~~n~----~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~ 101 (149)
T 3g2s_A 31 SINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQE----WEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVS 101 (149)
T ss_dssp HHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHc
Confidence 44455555554332111 244567788888887 9999999999888887 555677888888999999986
Q ss_pred C------CCHHHHHHHHHHHHHhcc
Q 002999 251 G------NSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 251 ~------~~~~~~~~A~~~L~~Ls~ 269 (859)
. .+..++...+.++..-+.
T Consensus 102 ~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 102 PKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp TTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3 467888888888877654
No 220
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=45.32 E-value=1.9e+02 Score=28.63 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=46.4
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHhhhhhhhcccccccCCCCCCCccccccccceecCCCCCCCCCccCCCCCCcCCcch
Q 002999 642 LMTIFRDQLSFPSKARVKQLAAHGLKNLSEAGRSLCAEDTGSPTPRRFCASLVFICGKPPPEPTTCPIHNTPCEDDSQLC 721 (859)
Q Consensus 642 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (859)
+++.++.+-.+. +.++|+..+.-|+........
T Consensus 54 ~l~~il~~~~~~-~~~vrk~~~~Fi~e~~~~k~~---------------------------------------------- 86 (257)
T 3gs3_A 54 FLESVLSLAHDS-NMEVRKQVVAFVEQVCKVKVE---------------------------------------------- 86 (257)
T ss_dssp HHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGG----------------------------------------------
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 356666665554 889999998888766532111
Q ss_pred hhhcCCchHHHhhhccCChhHHHHHHHHHHhhh
Q 002999 722 LLKSNCIKPLVDLLAEEDTNVEIAAVEALSTLI 754 (859)
Q Consensus 722 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 754 (859)
.-..+++.|..+|+++|+.|...++.+..++-
T Consensus 87 -l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 87 -LLPHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp -GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11345788889999999999999988888776
No 221
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.89 E-value=88 Score=30.45 Aligned_cols=88 Identities=10% Similarity=0.055 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhc
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLI 250 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~ 250 (859)
..-.|.+....++..-. .++..|.+-|++.++ .++..|+..|-.+..+ ......|.....+..|+++++
T Consensus 28 ~ileicD~I~~~~~~~k-----~a~ral~krl~~~n~----~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~ 98 (226)
T 3zyq_A 28 SILQICDLIRQGDTQAK-----YAVNSIKKKVNDKNP----HVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK 98 (226)
T ss_dssp HHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc
Confidence 44455555554333221 235568888888888 9999999999999887 445677777778888888886
Q ss_pred C-CCHHHHHHHHHHHHHhcc
Q 002999 251 G-NSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 251 ~-~~~~~~~~A~~~L~~Ls~ 269 (859)
. .+..+++.++.++...+.
T Consensus 99 ~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 99 RQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 5 457888888888877654
No 222
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=44.64 E-value=1.2e+02 Score=32.16 Aligned_cols=127 Identities=11% Similarity=0.083 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccCcc--h-HHHHH-------
Q 002999 168 DGLDKALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKDEE--S-KKIML------- 237 (859)
Q Consensus 168 ~~~~~al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~~~--~-r~~i~------- 237 (859)
+....++++|+.++.....-...+...+++..|+..|.+.+. .++..++..|..+|..+. . ...+.
T Consensus 73 ~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~----~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~ 148 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP----NMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 148 (386)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH----HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc----hHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 444568888998887555555566777888888888887777 888899988888776532 2 22221
Q ss_pred ---hhCchHHHHHHhcC-CCHHHHHHHHHHHHHhccCh-------hhhhHhhhhhChHHHHHHhhcCCCChHHH
Q 002999 238 ---EEGVTKSVIHSLIG-NSEKEKEYAVKLLLEFCIDE-------AYCKSVASEKGALVLLSSMTGNLELPALS 300 (859)
Q Consensus 238 ---~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~-------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 300 (859)
+..-...+|..|.. .+.+.+..+...+-.+.... ..+..+. ..|..+.| .-|+..+++.+.
T Consensus 149 ~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~-~~GL~~il-~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 149 EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-RLGLHQVL-QELREIENEDMK 220 (386)
T ss_dssp HHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-HTTHHHHH-HHHTTCCCHHHH
T ss_pred HhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HCChHHHH-HHHhccCChhHH
Confidence 22356678887774 44555555555555554443 2233443 24544444 444434555443
No 223
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=43.94 E-value=36 Score=30.47 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHh
Q 002999 503 IKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANI 573 (859)
Q Consensus 503 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L 573 (859)
+..|..-|.++++.++..|+.+|-.+....+...+..+.....+..|++++...+. .++.....++...
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~--~Vk~kil~li~~W 112 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHP--KVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCH--HHHHHHHHHHHHH
Confidence 45566667888999999999999999877778888888877888889998865443 6666665555543
No 224
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=42.93 E-value=45 Score=30.15 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=54.7
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC----CCchhHHHHHHHHHHHh
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN----QSANCERSDAACILANI 573 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~----~~~~~~~~~A~~~L~~L 573 (859)
++..|..-++++++.++..|+.+|-.+....+...+..+....++..|++++... .....++.-++.++..-
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 3456666778999999999999999998777788888888888999999999752 11136766666555544
No 225
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=42.89 E-value=1.2e+02 Score=27.31 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=56.3
Q ss_pred cHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhcC------CCHHHHHHHHHHHHHh
Q 002999 196 VVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLIG------NSEKEKEYAVKLLLEF 267 (859)
Q Consensus 196 ~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~~L 267 (859)
++..|.+-|+++++ .++..|+..|-.+..+ ......|.....+..|++++.. .+..++..++.++..-
T Consensus 39 a~rai~krl~~~n~----~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 39 APWLLAHKIQSPQE----KEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 45567788888888 9999999999998887 5567788888899999999863 3678888888888776
Q ss_pred cc
Q 002999 268 CI 269 (859)
Q Consensus 268 s~ 269 (859)
+.
T Consensus 115 ~~ 116 (148)
T 1mhq_A 115 TV 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 226
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=39.45 E-value=8.2 Score=23.99 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=12.1
Q ss_pred cccCcccccccCCCe
Q 002999 76 NFLCPLTKQVMKEPV 90 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv 90 (859)
.|.||+|+..|-||=
T Consensus 3 k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMD 17 (28)
T ss_dssp CEECTTSSCEESSHH
T ss_pred cccCccccccCcChH
Confidence 589999999877763
No 227
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.42 E-value=45 Score=32.60 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=54.6
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHHHhc
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILANIQ 574 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 574 (859)
++..|..-|++.++.++..|+.+|-.+....+...+..+.....+..|++++..... ..++.-++.++...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~-~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVE-VNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHH
Confidence 345666778899999999999999999877778888888887888889988865444 466666655555443
No 228
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=38.64 E-value=63 Score=29.97 Aligned_cols=73 Identities=8% Similarity=0.114 Sum_probs=54.7
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccC----CCchhHHHHHHHHHHHhc
Q 002999 502 GIKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDN----QSANCERSDAACILANIQ 574 (859)
Q Consensus 502 ~i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~----~~~~~~~~~A~~~L~~L~ 574 (859)
++..|..-++++++.++..|+.+|-.+....+...+..+.....+..|++++... .....|+..++.++..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3456777788999999999999999998776778888888878999999999632 112366666666655443
No 229
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.68 E-value=52 Score=31.95 Aligned_cols=68 Identities=9% Similarity=0.136 Sum_probs=50.9
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhccCCCchhHHHHHHHHHH
Q 002999 503 IKYIIQFLEHPEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILDNQSANCERSDAACILA 571 (859)
Q Consensus 503 i~~Lv~lL~~~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~~~A~~~L~ 571 (859)
+..|..-|.++++.++..|+.+|-.+....+...+..+.....+..|++++.+... .+++..++.++.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~-~~Vk~kil~li~ 111 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPH-ENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence 45566677889999999999999999866667777888877888999998876443 355554444443
No 230
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=34.65 E-value=25 Score=29.44 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=26.4
Q ss_pred cccCcccccccCCCeecCCCchhcHHHHHHHHHh
Q 002999 76 NFLCPLTKQVMKEPVVLESAQAYERKAIEYWFER 109 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~ 109 (859)
.+.||+|++.+..+-+.+. ..-|..|++|...
T Consensus 63 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLEPV--PELKEQIQAWMRE 94 (100)
T ss_dssp CSBCSSSCCBCCTTSSEEC--HHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCChhhceEC--HHHHHHHHHHHHH
Confidence 4789999999987766665 4679999999987
No 231
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=33.16 E-value=71 Score=25.79 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=36.2
Q ss_pred cccCcccccccC-----CCeec--CCCchhcHHHHHHHHHhcccCCCCCCCCCCCcccC
Q 002999 76 NFLCPLTKQVMK-----EPVVL--ESAQAYERKAIEYWFERCLEDGRDPTCPVTGQVLK 127 (859)
Q Consensus 76 ~~~cpi~~~~m~-----dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~~cP~t~~~l~ 127 (859)
.-.|.||++-.- +|.+. .|+...||.|.+--..+ | +..||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke----G-~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE----G-TQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT----S-CSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc----c-CccccccCCccc
Confidence 357999987521 36565 68899999999977776 5 789999988875
No 232
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.97 E-value=2.1e+02 Score=27.56 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCcchhHHHhcCcHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHHHHHHhc
Q 002999 173 ALDIVFKISEEHPSNRYRVRNAGVVLLIVKLLKSSSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKSVIHSLI 250 (859)
Q Consensus 173 al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~Lv~lL~ 250 (859)
..-.|.+....++..-. .++..|.+-|++.++ .++..|+..|-.+..+ +.....|+....+..|+++++
T Consensus 25 ~~leicd~i~~~~~~~k-----~a~r~l~krl~~~n~----~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~ 95 (220)
T 1dvp_A 25 SILLICDEINQKDVTPK-----NAFAAIKKKMNSPNP----HSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLE 95 (220)
T ss_dssp HHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCHH-----HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhc
Confidence 34445555554333211 234567778888888 9999999999998887 445667777778888888886
Q ss_pred C-CCHHHHHHHHHHHHHhcc
Q 002999 251 G-NSEKEKEYAVKLLLEFCI 269 (859)
Q Consensus 251 ~-~~~~~~~~A~~~L~~Ls~ 269 (859)
+ .+..++..++.++..-+.
T Consensus 96 ~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 96 STPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HCSCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 4 356788877777766543
No 233
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.93 E-value=15 Score=30.38 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCCCCCCcccCCCCCcc--hhhh-HhHHHHHHHhc
Q 002999 116 DPTCPVTGQVLKSLELKP--NIGL-AGAIEEWVNRN 148 (859)
Q Consensus 116 ~~~cP~t~~~l~~~~l~p--n~~l-~~~I~~w~~~~ 148 (859)
..+||+|...|.++-..| .+.+ +..|+.|...+
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~ 42 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESR 42 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHH
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHc
Confidence 578999999998765543 6666 88999998875
No 234
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.82 E-value=12 Score=22.12 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=9.3
Q ss_pred ccCcccccccC
Q 002999 77 FLCPLTKQVMK 87 (859)
Q Consensus 77 ~~cpi~~~~m~ 87 (859)
..||+|++.|-
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 67999999884
No 235
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.16 E-value=89 Score=31.05 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcccCcc-hHHHHHhhCchHHHHHHhcC--------CCHHHHHHHHHHHHHhccChhh-hhHhhhhhCh
Q 002999 214 ILRSKALMALLSMAKDEE-SKKIMLEEGVTKSVIHSLIG--------NSEKEKEYAVKLLLEFCIDEAY-CKSVASEKGA 283 (859)
Q Consensus 214 ~~~~~al~~L~~L~~~~~-~r~~i~~~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~~Ls~~~~~-~~~i~~~~g~ 283 (859)
..+.-++++++|+-.++. .+..+........++..+.+ .+...+..++.++.|++..... +.. ...
T Consensus 105 ~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~----~e~ 180 (253)
T 3gae_A 105 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LEL 180 (253)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC----TTH
T ss_pred hHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch----HHH
Confidence 789999999999999987 67777654344555554422 2456777888889999864221 111 123
Q ss_pred HHHHHHhhcC--------CCChHHHHHHHHHHHHhcCCCcC
Q 002999 284 LVLLSSMTGN--------LELPALSNLADEVFKKMERIEEI 316 (859)
Q Consensus 284 i~~Lv~lL~~--------~~~~~~~~~a~~aL~nL~~~~~~ 316 (859)
...++.++.. ..|++....++.+|.+|...+..
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHH
Confidence 3444444441 13778889999999999864433
No 236
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=24.62 E-value=3.5e+02 Score=24.32 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=51.3
Q ss_pred cHHHHHHHHhc-CCCCcchHHHHHHHHHHHhcccC--cchHHHHHhhCchHH-HHHHhcC---CCHHHHHHHHHHHHHhc
Q 002999 196 VVLLIVKLLKS-SSKSVGTILRSKALMALLSMAKD--EESKKIMLEEGVTKS-VIHSLIG---NSEKEKEYAVKLLLEFC 268 (859)
Q Consensus 196 ~i~~Lv~lL~~-~~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~g~i~~-Lv~lL~~---~~~~~~~~A~~~L~~Ls 268 (859)
++..|.+-|++ .++ .++..|+..|-.+..+ +.-...+.....+.. |++++.. .+..+++.++.++..-+
T Consensus 54 a~ral~krl~~~~n~----~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNF----HEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCH----HHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCH----HHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 34567777764 666 8899999999888877 556677777788887 7888842 23578888888777665
Q ss_pred c
Q 002999 269 I 269 (859)
Q Consensus 269 ~ 269 (859)
.
T Consensus 130 ~ 130 (157)
T 1elk_A 130 D 130 (157)
T ss_dssp H
T ss_pred H
Confidence 4
No 237
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=23.77 E-value=85 Score=24.66 Aligned_cols=47 Identities=6% Similarity=0.153 Sum_probs=34.7
Q ss_pred CcccCcccccccCCCeec--C--CCchhcHHHHHHHHHhcccCCCCCCCCCC
Q 002999 75 KNFLCPLTKQVMKEPVVL--E--SAQAYERKAIEYWFERCLEDGRDPTCPVT 122 (859)
Q Consensus 75 ~~~~cpi~~~~m~dPv~~--~--~g~t~~r~~I~~~~~~~~~~~~~~~cP~t 122 (859)
..++|-+|++-++|--.+ | .+|.||--|=++.+.+... +...+||-.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~-~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGA-TGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHS-SSCCCCTTS
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCC-CCcEECCCC
Confidence 349999999999996544 2 3799998888888877332 336788875
No 238
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=21.05 E-value=46 Score=26.70 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=25.1
Q ss_pred ccCcccccccCCCeecCCCchhcHHHHHHHHHhc
Q 002999 77 FLCPLTKQVMKEPVVLESAQAYERKAIEYWFERC 110 (859)
Q Consensus 77 ~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~ 110 (859)
+.||+|++.+...-+.+. ..-|..|++|...+
T Consensus 49 ~~cP~~~~~l~~~~l~pn--~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 49 PTDPFNRQMLTESMLEPV--PELKEQIQAWMREK 80 (85)
T ss_dssp SBCTTTCCBCCGGGCEEC--HHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCChHhcchH--HHHHHHHHHHHHHh
Confidence 679999998876655554 45699999999873
No 239
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=21.03 E-value=49 Score=27.42 Aligned_cols=32 Identities=9% Similarity=0.266 Sum_probs=25.5
Q ss_pred cccCcccccccCCCeecCCCchhcHHHHHHHHHh
Q 002999 76 NFLCPLTKQVMKEPVVLESAQAYERKAIEYWFER 109 (859)
Q Consensus 76 ~~~cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~ 109 (859)
...||+|++.+...-+.+. ..-|..|++|...
T Consensus 57 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRPN--TELKEKIQRWLAE 88 (98)
T ss_dssp SCBCTTTCSBCCTTTSEEC--HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCChhhceEc--HHHHHHHHHHHHH
Confidence 3679999999886655554 4689999999987
No 240
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=20.37 E-value=2.6e+02 Score=27.62 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccCcccccchHHHHH-HhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHHHhhC
Q 002999 423 KELAAATIANVVSNPGCWELASADKLGHSMQSESIVSSLL-GLLSGVSPQCQVSTLRILCGIASSPQ-AAESVATHIKSG 500 (859)
Q Consensus 423 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~~~i~~Ll-~LL~~~~~~~~~~a~~aL~~La~~~~-~~~~~~~~i~~~ 500 (859)
+-.+..+++-++.+++... .+..++ ..+....+..+.-++++++|+-.++. .. +.+...
T Consensus 71 ~fP~lDllRl~~~~~~~~~---------------~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~----~l~~~~ 131 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYSS---------------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGV----KLLESN 131 (253)
T ss_dssp CHHHHHHHHHHGGGCSCGG---------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHH----HHHTSH
T ss_pred cchHHHHHHHHHcCCchHH---------------HHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHH----HHHhcc
Confidence 4457777777777664322 122222 22334567888899999999988876 32 223221
Q ss_pred CCHHHHHHhhcC--------CChhHHHHHHHHHHHHhhhccHHHHHhcCCCCchHHHHHhhcc----C----CCchhHHH
Q 002999 501 DGIKYIIQFLEH--------PEVEHRTYAFRLTRILSERIGQDLAYALKPFDKLVLFKDKILD----N----QSANCERS 564 (859)
Q Consensus 501 g~i~~Lv~lL~~--------~~~~v~~~A~~~L~~Ls~~~~~~~~~~l~~~g~i~~Lv~lL~~----~----~~~~~~~~ 564 (859)
.....++..+.+ .+..++..++.++.|++-... +.-.+......++.++.. . ++ .|...
T Consensus 132 ~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~----~~~~~~e~~~~l~~~i~~~~~~~e~~~~d-~Ea~y 206 (253)
T 3gae_A 132 QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT----KGNSDLELLPIVADAINTKYGPLEEYQEC-EEAAY 206 (253)
T ss_dssp HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHH----TSCSCTTHHHHHHHHHHTTTTTSHHHHHS-HHHHH
T ss_pred hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHh----hccchHHHHHHHHHHHHHHhcccccccCC-HHHHH
Confidence 123344443311 245688888899999982211 100112344555655553 1 11 24555
Q ss_pred HHHHHHHHhcC
Q 002999 565 DAACILANIQL 575 (859)
Q Consensus 565 ~A~~~L~~L~~ 575 (859)
.++.+|++|..
T Consensus 207 R~LvAlGtL~~ 217 (253)
T 3gae_A 207 RLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55666666553
Done!