BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003000
(859 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 297 bits (760), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 182/449 (40%), Positives = 259/449 (57%), Gaps = 32/449 (7%)
Query: 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGE 449
V F DV G + EL+E+V+F + R G R KTLLA+AVAGE
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 450 AGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGG 509
A V FF IS S FVE++VGVGA+RVR L+ +AK +AP +VFIDE+DAVGR RG G G
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 510 QERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 569
ER+ TLNQLLV +DGF+ + +I +A+TNRPDILDPAL+RPGRFD+KI + P ++GR
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRK 192
Query: 570 EILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 629
+IL++H R KP+A+DV+ +A T G VGA+L N+V AA+ R+GR +IT D +A
Sbjct: 193 KILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEA 252
Query: 630 -----AQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGREL 684
A + +L S R +A +EA AVV+ P+ + + ++I PR + L
Sbjct: 253 IDRVIAGPARKSLL----ISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKAL 308
Query: 685 GYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAA 744
GY + K+ ++SR LLD +T L RAA+E+ G+ +++ A + A A
Sbjct: 309 GYTLHLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIA 363
Query: 745 RTFV--------LGGLS----------DKHFGLSNFWVADRINEIDTEALRILNLCYERA 786
R V LG L+ K + + ++ID E +I+ CYERA
Sbjct: 364 RNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERA 423
Query: 787 KEILQRNRNLLDAVVNELVEKKSLTKQEF 815
KEI+++ R LD +V L+EK+++ E
Sbjct: 424 KEIIRKYRKQLDNIVEILLEKETIEGDEL 452
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 295 bits (754), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 181/449 (40%), Positives = 258/449 (57%), Gaps = 32/449 (7%)
Query: 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGE 449
V F DV G + EL+E+V+F + R G R TLLA+AVAGE
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 450 AGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGG 509
A V FF IS S FVE++VGVGA+RVR L+ +AK +AP +VFIDE+DAVGR RG G G
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 510 QERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 569
ER+ TLNQLLV +DGF+ + +I +A+TNRPDILDPAL+RPGRFD+KI + P ++GR
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRK 192
Query: 570 EILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 629
+IL++H R KP+A+DV+ +A T G VGA+L N+V AA+ R+GR +IT D +A
Sbjct: 193 KILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEA 252
Query: 630 -----AQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGREL 684
A + +L S R +A +EA AVV+ P+ + + ++I PR + L
Sbjct: 253 IDRVIAGPARKSLL----ISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKAL 308
Query: 685 GYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAA 744
GY + K+ ++SR LLD +T L RAA+E+ G+ +++ A + A A
Sbjct: 309 GYTLHLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIA 363
Query: 745 RTFV--------LGGLS----------DKHFGLSNFWVADRINEIDTEALRILNLCYERA 786
R V LG L+ K + + ++ID E +I+ CYERA
Sbjct: 364 RNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERA 423
Query: 787 KEILQRNRNLLDAVVNELVEKKSLTKQEF 815
KEI+++ R LD +V L+EK+++ E
Sbjct: 424 KEIIRKYRKQLDNIVEILLEKETIEGDEL 452
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 262/479 (54%), Gaps = 42/479 (8%)
Query: 362 AMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRR 421
A F KS ARV L V F DVAG + + EL+EIV+F + +
Sbjct: 11 AFSFTKSRARV-----------LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM 59
Query: 422 GVRXXXXXXXXXXXXXXKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA 481
G R KT LA+AVAGEA V F + S S FVE++VGVGA+RVR L++ A
Sbjct: 60 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 119
Query: 482 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 541
K +AP +VFIDE+DAVGR+RG G G ER+ TLNQLLV +DGFE ++ +A+TNRP
Sbjct: 120 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 179
Query: 542 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAE 601
DILDPAL+RPGRFDR+I I P + GR +IL++HAR KP+A+DVD +A T G VGA+
Sbjct: 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
Query: 602 LANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER---SSETWRQVAINEAAM 658
L N++ AA+ R+GR +IT DL +AA + ML K+ S R A +EA
Sbjct: 240 LENLLNEAALLAAREGRRKITMKDLEEAA--DRVMMLPAKKSLVLSPRDRRITAYHEAGH 297
Query: 659 AVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGML--SRQSLLDHITVQLAP 716
A+ A + VTI PR GR LG++ M +E ML SR+ LLD I V LA
Sbjct: 298 ALAAHFLEHADGVHKVTIVPR-GRALGFM------MPRREDMLHWSRKRLLDQIAVALAG 350
Query: 717 RAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDKHFGLSNFWV------------ 764
RAA+E+ + ++T A AR + FG + V
Sbjct: 351 RAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVR 408
Query: 765 ---ADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVE 820
+ ID R++ Y+R K +L R +L+ V L+E+++LT +EF +VE
Sbjct: 409 QYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVE 467
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 194/479 (40%), Positives = 262/479 (54%), Gaps = 42/479 (8%)
Query: 362 AMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRR 421
A F KS ARV L V F DVAG + + EL+EIV+F + +
Sbjct: 20 AFSFTKSRARV-----------LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM 68
Query: 422 GVRXXXXXXXXXXXXXXKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA 481
G R KT LA+AVAGEA V F + S S FVE++VGVGA+RVR L++ A
Sbjct: 69 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 128
Query: 482 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 541
K +AP +VFIDE+DAVGR+RG G G ER+ TLNQLLV +DGFE ++ +A+TNRP
Sbjct: 129 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 188
Query: 542 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAE 601
DILDPAL+RPGRFDR+I I P + GR +IL++HAR KP+A+DVD +A T G VGA+
Sbjct: 189 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
Query: 602 LANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER---SSETWRQVAINEAAM 658
L N++ AA+ R+GR +IT DL +AA + ML K+ S R A +EA
Sbjct: 249 LENLLNEAALLAAREGRRKITMKDLEEAA--DRVMMLPAKKSLVLSPRDRRITAYHEAGH 306
Query: 659 AVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGML--SRQSLLDHITVQLAP 716
A+ A + VTI PR GR LG++ M +E ML SR+ LLD I V LA
Sbjct: 307 ALAAHFLEHADGVHKVTIVPR-GRALGFM------MPRREDMLHWSRKRLLDQIAVALAG 359
Query: 717 RAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDKHFGLSNFWV------------ 764
RAA+E+ + ++T A AR + FG + V
Sbjct: 360 RAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVR 417
Query: 765 ---ADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVE 820
+ ID R++ Y+R K +L R +L+ V L+E+++LT +EF +VE
Sbjct: 418 QYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVE 476
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 225 bits (574), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 156/228 (68%)
Query: 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+ F+DVAG + + E+ E+V++ +++ G + KTLLAKA+A
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA 66
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
GEA V FF+IS S FVE++VGVGASRVR ++++AK AP ++FIDE+DAVGR+RG G
Sbjct: 67 GEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 126
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
G ER+ TLNQ+LV +DGFEG +I IA+TNRPD+LDPAL+RPGRFDR++ + P + G
Sbjct: 127 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186
Query: 568 RMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
R +ILKVH R+ P+A D+D +A T G GA+LAN+V AA+ R
Sbjct: 187 REQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/270 (49%), Positives = 172/270 (63%), Gaps = 11/270 (4%)
Query: 362 AMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRR 421
A F KS ARV L V F DVAG + + EL+EIV+F + +
Sbjct: 20 AFSFTKSRARV-----------LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM 68
Query: 422 GVRXXXXXXXXXXXXXXKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA 481
G R KT LA+AVAGEA V F + S S FVE++VGVGA+RVR L++ A
Sbjct: 69 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 128
Query: 482 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 541
K +AP +VFIDE+DAVGR+RG G G ER+ TLNQLLV +DGFE ++ +A+TNRP
Sbjct: 129 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 188
Query: 542 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAE 601
DILDPAL+RPGRFDR+I I P + GR +IL++HAR KP+A+DVD +A T G VGA+
Sbjct: 189 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
Query: 602 LANIVEVAAINMMRDGRTEITTDDLLQAAQ 631
L N++ AA+ R+GR +IT DL +AA
Sbjct: 249 LENLLNEAALLAAREGRRKITMKDLEEAAS 278
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 218 bits (555), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/254 (48%), Positives = 168/254 (66%), Gaps = 11/254 (4%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAG 448
+V+F D+AG + + E+ EIV F + E Y G + KTLLAKAVAG
Sbjct: 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 449 EAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER---GLIK 505
EA V FFS+ S F+E++VG+GASRVR L++ AK APS++FIDE+DA+G+ R G++
Sbjct: 67 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV- 125
Query: 506 GSGGQERDATLNQLLVCLDGFEGRGN--VITIASTNRPDILDPALVRPGRFDRKIFIPKP 563
SG ER+ TLNQLL +DGF G N VI +A+TNRP+ILDPAL+RPGRFDR++ + KP
Sbjct: 126 -SGNDEREQTLNQLLAEMDGF-GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 183
Query: 564 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623
GR+EILKVH + +A+DV+ VA +T G+ GA+LANI+ AA+ R+ + E+
Sbjct: 184 DFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 243
Query: 624 DDLLQAAQIEERGM 637
L +A ERG+
Sbjct: 244 QHLKEAV---ERGI 254
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/242 (51%), Positives = 164/242 (67%)
Query: 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGE 449
V F DVAG + + EL+EIV+F + + G R KT LA+AVAGE
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72
Query: 450 AGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGG 509
A V F + S S FVE++VGVGA+RVR L++ AK +AP +VFIDE+DAVGR+RG G G
Sbjct: 73 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 132
Query: 510 QERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 569
ER+ TLNQLLV +DGFE ++ +A+TNRPDILDPAL+RPGRFDR+I I P + GR
Sbjct: 133 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 192
Query: 570 EILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 629
+IL++HAR KP+A+DVD +A T G VGA+L N++ AA+ R+GR +IT DL +A
Sbjct: 193 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252
Query: 630 AQ 631
A
Sbjct: 253 AS 254
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 152/244 (62%), Gaps = 1/244 (0%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+V++ D+ GL K E+ E+V+ H E++ + G+ KTLLAKAVA
Sbjct: 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
E F + S+ V+ ++G GAS V+ +++ AK+ APS++FIDE+DA+ +R
Sbjct: 73 TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
G +E TL QLL +DGF+ RG+V I +TNRPDILDPA++RPGRFDR I +P P G
Sbjct: 133 GDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192
Query: 568 RMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 627
R+EILK+H RK +A+DV+ +A MT+G VGAEL I A +N +R+ R +T DD
Sbjct: 193 RLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFR 252
Query: 628 QAAQ 631
+A +
Sbjct: 253 KAVE 256
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 182 bits (463), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 3/239 (1%)
Query: 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+ V F DVAG+ + +LE+ E V + E + + G + KTLLAKAVA
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG-LIKG 506
EA V F +++ ++FVE+ G+GA+RVRSL++EA+ AP +V+IDE+DAVG++R + G
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 507 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLI 566
E + TLNQLLV +DG +VI +ASTNR DILD AL+RPGR DR +FI P L
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 567 GRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623
R EI + H + + + + +A +T G GA++ANI AA++ R+G T + T
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 139/249 (55%), Gaps = 2/249 (0%)
Query: 384 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLL 442
E+G ++ F + GL + EL E+++ + E+++R G++ KTLL
Sbjct: 173 FEQG-EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL 231
Query: 443 AKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502
AKAVA G NF AS V+ Y+G A +R ++ AK++ P ++F+DE+DA+G R
Sbjct: 232 AKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRF 291
Query: 503 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 562
S +E TL +LL +DGF+ G I +TNRPD LDPAL+RPGR DRK+ IP
Sbjct: 292 SEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL 351
Query: 563 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 622
P GR+EI K+H K + D+ A M+DG GA++ N A +RD R I
Sbjct: 352 PNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHIN 411
Query: 623 TDDLLQAAQ 631
DDL++A +
Sbjct: 412 PDDLMKAVR 420
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 146/256 (57%), Gaps = 4/256 (1%)
Query: 392 FSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGEA 450
+SD+ GL E++E V+ TH E+Y G++ KTLLAKAVA +
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 451 GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQ 510
F I S+ ++ Y+G G R +++ A +NAPS+VFIDE+DA+G +R G +
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 511 ERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 570
E T+ +LL LDGF+ RG+V I +TN+ + LDPAL+RPGR DRKI P L + +
Sbjct: 301 EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360
Query: 571 ILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630
IL +H K +++DV+ + + D + GA++ + A + +R+ R ++T +D QA
Sbjct: 361 ILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQA- 419
Query: 631 QIEERGMLDRKERSSE 646
+ER M ++ E + E
Sbjct: 420 --KERVMKNKVEENLE 433
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 137/239 (57%), Gaps = 1/239 (0%)
Query: 392 FSDVAGLGKIRLEL-EEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGEA 450
+SDV GL K EL E IV + ++ G+R KTLLA+A A +
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 451 GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQ 510
F ++A Q V++Y+G GA VR + AK+ AP+++FIDELDA+G +R + SG +
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 511 ERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 570
E T+ +LL LDGF V +A+TNR D+LDPAL+R GR DRKI P P R +
Sbjct: 300 EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQ 359
Query: 571 ILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 629
IL++H+RK DD+++ +A TD GA+L + A + +R+G++ + +D ++
Sbjct: 360 ILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEG 418
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 142/246 (57%), Gaps = 5/246 (2%)
Query: 384 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLL 442
+E+ D + V GL K E++E+++ H E++ G+ KTLL
Sbjct: 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198
Query: 443 AKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502
A+AVA F +S ++ V+ Y+G G+ VR L+ A+++APS++F+DE+D++G R
Sbjct: 199 ARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR- 257
Query: 503 LIKGSGGQERDA--TLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 560
++GSGG + + T+ +LL LDGFE N+ I +TNR DILDPAL+RPGR DRKI
Sbjct: 258 -VEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
Query: 561 PKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTE 620
P P + R EIL++H+RK + ++ VA +G GA++ + A + +R+ R
Sbjct: 317 PPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIH 376
Query: 621 ITTDDL 626
+T +D
Sbjct: 377 VTQEDF 382
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 130/222 (58%), Gaps = 1/222 (0%)
Query: 390 VKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAG 448
V + D+ GL ++ EL+E+V++ H + + + G+ KTLLAKA+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 449 EAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 508
E NF SI + + ++ G + VR ++ +A+ AP V+F DELD++ + RG G G
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 509 GQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGR 568
G D +NQ+L +DG + NV I +TNRPDI+DPA++RPGR D+ I+IP P R
Sbjct: 132 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191
Query: 569 MEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAA 610
+ ILK + RK P+A DVD +A MT+G GA+L I + A
Sbjct: 192 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 130/222 (58%), Gaps = 1/222 (0%)
Query: 390 VKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAG 448
V + D+ GL ++ EL+E+V++ H + + + G+ KTLLAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 449 EAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 508
E NF SI + + ++ G + VR ++ +A+ AP V+F DELD++ + RG G G
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 509 GQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGR 568
G D +NQ+L +DG + NV I +TNRPDI+DPA++RPGR D+ I+IP P R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 569 MEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAA 610
+ ILK + RK P+A DVD +A MT+G GA+L I + A
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 136/228 (59%), Gaps = 4/228 (1%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+V + D+ G K +++E+V+ H +++ GV+ KTL+A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+ +R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTH 317
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++ I P G
Sbjct: 318 GEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 568 RMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
R+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 130/222 (58%), Gaps = 1/222 (0%)
Query: 390 VKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAG 448
V + D+ GL ++ EL+E+V++ H + + + G+ KTLLAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 449 EAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 508
E NF SI + + ++ G + VR ++ +A+ AP V+F DELD++ + RG G G
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 509 GQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGR 568
G D +NQ+L +DG + NV I +TNRPDI+DPA++RPGR D+ I+IP P R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 569 MEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAA 610
+ ILK + RK P+A DVD +A MT+G GA+L I + A
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 4/228 (1%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+V + DV G K +++E+V+ H +++ GV+ KTL+A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+ +R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTH 317
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++ I P G
Sbjct: 318 GEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 568 RMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
R+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 4/228 (1%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+V + DV G K +++E+V+ H +++ GV+ KTL+A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+ +R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTH 317
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++ I P G
Sbjct: 318 GEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 568 RMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
R+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 136/228 (59%), Gaps = 4/228 (1%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+V + D+ G K +++E+V+ H +++ GV+ KTL+A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+ +R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTH 317
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++ I P G
Sbjct: 318 GEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 568 RMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
R+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 136/228 (59%), Gaps = 4/228 (1%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+V + D+ G K +++E+V+ H +++ GV+ KTL+A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+ +R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTH 317
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++ I P G
Sbjct: 318 GEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 568 RMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
R+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 136/228 (59%), Gaps = 4/228 (1%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+V + D+ G K +++E+V+ H +++ GV+ KTL+A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+ +R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTH 317
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++ I P G
Sbjct: 318 GEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 568 RMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
R+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 131/233 (56%), Gaps = 9/233 (3%)
Query: 389 DVKFSDVAGLGKIRLELE-EIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
+V ++D+ L IR EL I+ + + ++ G+ KTLLAKAVA
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
E+G+NF S+ + + +YVG VR ++Q AK++AP V+F DE+DA+ R + +
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRS-DRET 124
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
G R +NQLL +DG E R V +A+TNRPDI+DPA++RPGR D+ +F+ P
Sbjct: 125 GASVR--VVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182
Query: 568 RMEILKV---HARKKPMADDVDYLAVAS--MTDGMVGAELANIVEVAAINMMR 615
R+ ILK + K P+ DV+ A+A D GA+L+ +V A+I +R
Sbjct: 183 RLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALR 235
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 125/247 (50%), Gaps = 1/247 (0%)
Query: 384 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLL 442
+E DV +SDV G +L E+V+ E + G+ KTL
Sbjct: 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259
Query: 443 AKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502
A+AVA F + S+ V+ YVG GA VR L++ A+ ++F DE+DAVG R
Sbjct: 260 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARF 319
Query: 503 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 562
G E T+ +L+ LDGF+ RGN+ + +TNRP+ LDPAL+RPGR DRK+
Sbjct: 320 DDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379
Query: 563 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 622
P L GR I ++H++ + + + ++ + GAEL ++ A + +R R T
Sbjct: 380 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 439
Query: 623 TDDLLQA 629
D L+A
Sbjct: 440 EKDFLKA 446
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 136 bits (342), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 135/258 (52%), Gaps = 8/258 (3%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVA 447
DV ++DV GL + E+ E V+ ++Y + G+ KT+L KAVA
Sbjct: 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227
Query: 448 GEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507
F ++ S+FV Y+G G VR +++ A++NAPS++FIDE+D++ +R +
Sbjct: 228 NSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG 287
Query: 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 567
+E L +LL +DGF+ NV I +TNR D LDPAL+RPGR DRKI P L
Sbjct: 288 SDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF--PSLRD 345
Query: 568 RME---ILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624
R E I A K +A + D ++ D + GA +A I++ A + +R R I
Sbjct: 346 RRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQS 405
Query: 625 DLLQ--AAQIEERGMLDR 640
DL + A Q++ +D+
Sbjct: 406 DLEEAYATQVKTDNTVDK 423
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 13/232 (5%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAG 448
+VK+ DVAGL + L+E V + + K+ LAKAVA
Sbjct: 23 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 82
Query: 449 EAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 508
EA FFS+S+S V ++G V+ L+ A++N PS++FIDE+DA+ RG +G
Sbjct: 83 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRG--EGES 140
Query: 509 GQERDATLNQLLVCLDGFEGRGN----VITIASTNRPDILDPALVRPGRFDRKIFIPKPG 564
R +LLV ++G GN V+ + +TN P LD A+ R RF+R+I+IP P
Sbjct: 141 EASRRIK-TELLVQMNGV---GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 194
Query: 565 LIGRMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
L R + +++ P + DY + +MT+G G+++A +V+ A + +R
Sbjct: 195 LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 246
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 13/232 (5%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAG 448
+VK+ DVAGL + L+E V + + K+ LAKAVA
Sbjct: 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73
Query: 449 EAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 508
EA FFS+S+S V ++G V+ L+ A++N PS++FID++DA+ RG +G
Sbjct: 74 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG--EGES 131
Query: 509 GQERDATLNQLLVCLDGFEGRGN----VITIASTNRPDILDPALVRPGRFDRKIFIPKPG 564
R +LLV ++G GN V+ + +TN P LD A+ R RF+R+I+IP P
Sbjct: 132 EASRRIK-TELLVQMNGV---GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 185
Query: 565 LIGRMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
L R + +++ P + DY + +MT+G G+++A +V+ A + +R
Sbjct: 186 LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 237
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 13/232 (5%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAG 448
+VK+ DVAGL + L+E V + + K+ LAKAVA
Sbjct: 32 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 91
Query: 449 EAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 508
EA FFS+S+S V ++G V+ L+ A++N PS++FID++DA+ RG +G
Sbjct: 92 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG--EGES 149
Query: 509 GQERDATLNQLLVCLDGFEGRGN----VITIASTNRPDILDPALVRPGRFDRKIFIPKPG 564
R +LLV ++G GN V+ + +TN P LD A+ R RF+R+I+IP P
Sbjct: 150 EASRRIK-TELLVQMNGV---GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 203
Query: 565 LIGRMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
L R + +++ P + DY + +MT+G G+++A +V+ A + +R
Sbjct: 204 LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 255
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 15/233 (6%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAG 448
+VK+ DVAGL + L+E V + + K+ LAKAVA
Sbjct: 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106
Query: 449 EAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 508
EA FFS+S+S V ++G V+ L+ A++N PS++FID++DA+ R G G
Sbjct: 107 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR----GEG 162
Query: 509 GQERDATL-NQLLVCLDGFEGRGN----VITIASTNRPDILDPALVRPGRFDRKIFIPKP 563
E + +LLV ++G GN V+ + +TN P LD A+ R RF+R+I+IP P
Sbjct: 163 ESEASRRIKTELLVQMNGV---GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 217
Query: 564 GLIGRMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
L R + +++ P + DY + +MT+G G+++A +V+ A + +R
Sbjct: 218 DLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 30/253 (11%)
Query: 382 QYLERGVDVKFSDVAGLGKIRLELEEIV-------KFFTHGEMYRRRGVRXXXXXXXXXX 434
+ ++ G VKF D+AG + L+EIV + FT G RG+
Sbjct: 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFT-GLRAPARGL------LLFGP 156
Query: 435 XXXXKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDEL 494
KT+LAKAVA E+ FF+ISA+ YVG G VR+L+ A++ PS++FID++
Sbjct: 157 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQV 216
Query: 495 DAVGRERGLIKGSGGQERDATL---NQLLVCLDGFEGRGN--VITIASTNRPDILDPALV 549
D++ ER +G E DA+ + L+ DG + G+ V+ + +TNRP LD A++
Sbjct: 217 DSLLCER--REG----EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVL 270
Query: 550 RPGRFDRKIFIPKPGLIGRMEILKVHARKK--PMADDVDYLAVASMTDGMVGAELANIVE 607
R RF +++++ P R+ +LK K+ P+ + +A MTDG G++L + +
Sbjct: 271 R--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAK 327
Query: 608 VAAINMMRDGRTE 620
AA+ +R+ + E
Sbjct: 328 DAALGPIRELKPE 340
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 136/275 (49%), Gaps = 34/275 (12%)
Query: 351 GEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVK 410
GEAE + K +Q GA V +ER +VK+SDVAGL + L+E V
Sbjct: 104 GEAESDDPEKKKLQNQLQGAIV-----------IER-PNVKWSDVAGLEGAKEALKEAVI 151
Query: 411 F---FTH---GEMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGEAG-VNFFSISASQFV 463
F H G+ RG+ K+ LAKAVA EA FFSIS+S V
Sbjct: 152 LPIKFPHLFTGKRTPWRGI------LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205
Query: 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 523
++G V++L+Q A++N PS++FIDE+D++ R + + + LV +
Sbjct: 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARR---IKTEFLVQM 262
Query: 524 DGFEGRGN--VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH-ARKKP 580
G G N ++ + +TN P +LD A+ R RF+++I+IP P R + ++H +
Sbjct: 263 QGV-GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQN 319
Query: 581 MADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
+ D+ + TDG GA+++ IV A + +R
Sbjct: 320 SLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 22/237 (9%)
Query: 389 DVKFSDVAGLGKIRLELEEIVKF---FTH---GEMYRRRGVRXXXXXXXXXXXXXXKTLL 442
+VK+SDVAGL + L+E V F H G+ RG+ K+ L
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGI------LLFGPPGTGKSYL 61
Query: 443 AKAVAGEAG-VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 501
AKAVA EA FFSIS+S V ++G V++L+Q A++N PS++FIDE+D++ R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 502 GLIKGSGGQERDATLNQLLVCLDGFEGRGN--VITIASTNRPDILDPALVRPGRFDRKIF 559
+ + + LV + G G N ++ + +TN P +LD A+ R RF+++I+
Sbjct: 122 SENESEAARR---IKTEFLVQMQGV-GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 175
Query: 560 IPKPGLIGRMEILKVH-ARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615
IP P R + K+H + + D+ + TDG GA+++ IV A + +R
Sbjct: 176 IPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 232
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 138/289 (47%), Gaps = 25/289 (8%)
Query: 380 LPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFT-HGEMYRRRGVRXXXXXXXX-XXXXX 437
L + +E G V+++D+AG + L+E+V + E++ G+R
Sbjct: 8 LDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFT--GLRAPAKGLLLFGPPGN 65
Query: 438 XKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 497
KTLLA+AVA E F +ISA+ YVG G VR+L+ A+ PS++FIDE+D++
Sbjct: 66 GKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSL 125
Query: 498 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN---VITIASTNRPDILDPALVRPGRF 554
ER + + + LV DG G + ++ +A+TNRP LD A +R RF
Sbjct: 126 LSERSSSEHEASRRLK---TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RF 180
Query: 555 DRKIFIPKPGLIGRMEILKVHARKKPMADDVDYL-AVASMTDGMVGAELANIVEVAAINM 613
+++++ P R +L +K+ D + L +A +TDG G++L + + AA+
Sbjct: 181 TKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240
Query: 614 MRDGRTE------------ITTDDLLQAAQIEERGMLDRKERSSETWRQ 650
+R+ E IT D + + R + + S E W Q
Sbjct: 241 IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 289
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 128/264 (48%), Gaps = 22/264 (8%)
Query: 382 QYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRR---RGVRXXXXXXXX-XXXXX 437
+ ++ G V + D+AG+ + ++EIV + M R G+R
Sbjct: 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVW----PMLRPDIFTGLRGPPKGILLFGPPGT 128
Query: 438 XKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 497
KTL+ K +A ++G FFSISAS +VG G VR+L+ A+ P+V+FIDE+D++
Sbjct: 129 GKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 188
Query: 498 GRERGLIKGSGGQERDATL-NQLLVCLDG--FEGRGNVITIASTNRPDILDPALVRPGRF 554
+R G G E + + LV LDG ++ + +TNRP +D A R R
Sbjct: 189 LSQR----GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RL 242
Query: 555 DRKIFIPKPGLIGRMEI-LKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINM 613
++++IP P R +I + + ++++ + + + +D GA++ + A++
Sbjct: 243 VKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP 302
Query: 614 MRDGRT----EITTDDLLQAAQIE 633
+R +T IT D + A I+
Sbjct: 303 IRSLQTADIATITPDQVRPIAYID 326
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 20/196 (10%)
Query: 644 SSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSR 703
S + ++AI+EA A++ + D + ++I PR G LG + K + +
Sbjct: 12 SPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIEDKH---IYDK 67
Query: 704 QSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAA-RTFVLGGLSDKHFGLSNF 762
+ L + I V L RAA+E++ G+ ++T A A R + G+SDK ++
Sbjct: 68 KDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIR 127
Query: 763 WVA---------------DRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEK 807
VA D + EID E RI+ YE+AK I++ + L AVV +L+EK
Sbjct: 128 RVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEK 187
Query: 808 KSLTKQEFFHLVELHG 823
+++T +EF + +L+G
Sbjct: 188 ETITCEEFVEVFKLYG 203
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 561 PKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTE 620
P P R++ILK+H+RK + ++ +A + G GAE+ + A +R+ R
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 621 ITTDDLLQA 629
+T +D A
Sbjct: 61 VTQEDFEXA 69
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 563 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 622
P R++ILK+H+RK + ++ +A + G GAE+ + A + +R+ R +T
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 623 TDDLLQA 629
+D A
Sbjct: 71 QEDFEMA 77
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 563 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 622
P L GR I ++H++ + + + ++ + GAEL ++ A + +R R T
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 623 TDDLLQA 629
D L+A
Sbjct: 68 EKDFLKA 74
>pdb|1CB0|A Chain A, Structure Of Human 5'-deoxy-5'-methylthioadenosine
Phosphorylase At 1.7 A Resolution
pdb|1CG6|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate At 1.7 A
Resolution
pdb|1K27|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase In Complex With A Transition State
Analogue
pdb|1SD1|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Formycin A
pdb|1SD2|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With 5'-Methylthiotubercidin
pdb|3OZC|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZE|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|C Chain C, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|D Chain D, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|E Chain E, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|F Chain F, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
Length = 283
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 110 LKKWSKDLPIVSDRIAY-TEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRT 168
L + + I+ ++ Y I++LK+EG ++ + GSLR++ +P +V+ D + RT
Sbjct: 58 LARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRT 117
Query: 169 VL 170
+
Sbjct: 118 TM 119
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 466 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 525
Y G R ++L ++ + + S++FIDE+ + G SGGQ A L + L+
Sbjct: 259 YRGDFEKRFKALLKQLEQDTNSILFIDEIHTI---IGAGAASGGQVDAANLIKPLLS--- 312
Query: 526 FEGRGNVITIASTNRPDIL-----DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 580
G + I ST + D AL R RF +KI I +P + ++I+ K
Sbjct: 313 ---SGKIRVIGSTTYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYE 366
Query: 581 MADDVDYLAVA 591
DV Y A A
Sbjct: 367 AHHDVRYTAKA 377
>pdb|1V6T|A Chain A, Crystal Structure Of Lactam Utilization Protein From
Pyrococcus Horikoshii Ot3
Length = 255
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 144 SPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSN--RKFWESWDELKIDSLCVNAYTP 198
+P G+L + P V+ + + V+ + R W +LK+D++CV+ P
Sbjct: 171 NPDGTLVPRGRPGAVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNP 227
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 633 EERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMD 692
E + LD + S+ T V M+ +N+P++ + I R GR+ Y+ + D
Sbjct: 135 ENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILEREGRKYMYLSLSCD 194
Query: 693 HMKFKEGMLSRQSLLD 708
H + +G ++ + ++D
Sbjct: 195 H-RLIDGAVATRFIVD 209
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 565 LIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624
L GR I ++H++ + + + ++ + GAEL ++ A +R R T
Sbjct: 3 LEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEK 62
Query: 625 DLLQA 629
D L+A
Sbjct: 63 DFLKA 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,491,274
Number of Sequences: 62578
Number of extensions: 753695
Number of successful extensions: 1769
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1678
Number of HSP's gapped (non-prelim): 49
length of query: 859
length of database: 14,973,337
effective HSP length: 107
effective length of query: 752
effective length of database: 8,277,491
effective search space: 6224673232
effective search space used: 6224673232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)