Query 003000
Match_columns 859
No_of_seqs 655 out of 5389
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 15:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 4.8E-87 1E-91 731.7 33.0 430 384-822 295-735 (752)
2 KOG0731 AAA+-type ATPase conta 100.0 1.4E-77 3.1E-82 696.8 37.5 445 385-836 303-763 (774)
3 COG0465 HflB ATP-dependent Zn 100.0 3.3E-77 7.2E-82 684.8 38.9 432 386-823 143-592 (596)
4 CHL00176 ftsH cell division pr 100.0 1.8E-72 3.9E-77 663.8 42.6 435 387-825 177-629 (638)
5 PRK10733 hflB ATP-dependent me 100.0 1.3E-69 2.9E-74 645.9 44.0 433 388-824 147-598 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 2.1E-67 4.5E-72 612.9 42.6 431 384-820 46-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.7E-48 3.6E-53 415.4 22.4 252 385-636 143-395 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.2E-48 4.9E-53 477.4 25.8 294 417-726 1621-1968(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 2.4E-42 5.1E-47 391.7 21.6 249 385-636 426-677 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 4.9E-41 1.1E-45 375.0 19.6 248 386-636 504-772 (802)
11 KOG0728 26S proteasome regulat 100.0 1.7E-38 3.8E-43 322.5 18.2 253 384-636 138-391 (404)
12 KOG0727 26S proteasome regulat 100.0 2.6E-37 5.6E-42 314.3 20.5 251 385-635 147-398 (408)
13 PF01434 Peptidase_M41: Peptid 100.0 4.5E-37 9.8E-42 320.0 21.2 193 622-818 1-213 (213)
14 KOG0733 Nuclear AAA ATPase (VC 100.0 1.3E-37 2.7E-42 347.9 18.0 227 387-616 184-414 (802)
15 KOG0729 26S proteasome regulat 100.0 5.2E-37 1.1E-41 314.1 15.3 252 385-636 169-421 (435)
16 KOG0726 26S proteasome regulat 100.0 4.4E-37 9.6E-42 318.1 13.7 252 385-636 177-429 (440)
17 KOG0652 26S proteasome regulat 100.0 2.7E-36 5.9E-41 308.1 16.8 249 386-634 164-413 (424)
18 PTZ00454 26S protease regulato 100.0 3.9E-35 8.5E-40 330.9 25.5 252 385-636 137-389 (398)
19 KOG0736 Peroxisome assembly fa 100.0 1.8E-35 3.8E-40 337.9 20.1 248 386-635 665-934 (953)
20 KOG0738 AAA+-type ATPase [Post 100.0 8.5E-35 1.8E-39 311.8 18.7 247 384-635 203-471 (491)
21 COG1223 Predicted ATPase (AAA+ 100.0 2.1E-34 4.5E-39 294.7 16.7 240 387-633 115-355 (368)
22 PTZ00361 26 proteosome regulat 100.0 7.1E-34 1.5E-38 322.6 22.5 252 385-636 175-427 (438)
23 PRK03992 proteasome-activating 100.0 7.7E-34 1.7E-38 321.3 22.8 251 386-636 124-375 (389)
24 KOG0735 AAA+-type ATPase [Post 100.0 3.4E-33 7.3E-38 316.4 18.6 226 388-616 662-888 (952)
25 COG0464 SpoVK ATPases of the A 100.0 3.6E-32 7.8E-37 317.6 21.7 245 386-633 235-483 (494)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 3.6E-32 7.8E-37 312.9 21.1 241 388-635 223-465 (489)
27 TIGR01243 CDC48 AAA family ATP 100.0 4.9E-32 1.1E-36 329.8 23.3 248 387-636 447-713 (733)
28 TIGR01242 26Sp45 26S proteasom 100.0 9.2E-32 2E-36 302.5 22.8 248 386-633 115-363 (364)
29 KOG0739 AAA+-type ATPase [Post 100.0 1E-31 2.2E-36 279.2 16.8 227 384-616 124-353 (439)
30 KOG0651 26S proteasome regulat 100.0 5E-32 1.1E-36 283.7 11.4 250 386-635 125-375 (388)
31 KOG0737 AAA+-type ATPase [Post 100.0 7.2E-31 1.6E-35 282.4 18.3 228 384-616 83-314 (386)
32 TIGR03689 pup_AAA proteasome A 100.0 1.5E-29 3.3E-34 290.9 22.1 266 385-652 174-498 (512)
33 PLN00020 ribulose bisphosphate 99.9 6.8E-27 1.5E-31 254.2 21.7 230 420-662 142-393 (413)
34 KOG0730 AAA+-type ATPase [Post 99.9 5.2E-27 1.1E-31 267.2 18.8 236 389-635 181-418 (693)
35 KOG0741 AAA+-type ATPase [Post 99.9 1.4E-27 3.1E-32 263.6 12.4 273 387-664 213-530 (744)
36 TIGR01243 CDC48 AAA family ATP 99.9 3.6E-26 7.9E-31 278.4 21.4 246 388-636 173-438 (733)
37 KOG0732 AAA+-type ATPase conta 99.9 3.2E-26 6.8E-31 274.1 15.5 229 386-617 258-493 (1080)
38 KOG0740 AAA+-type ATPase [Post 99.9 5.6E-25 1.2E-29 245.0 14.7 244 386-636 146-407 (428)
39 COG0542 clpA ATP-binding subun 99.9 1.1E-24 2.3E-29 257.3 13.3 261 220-578 391-707 (786)
40 PRK10865 protein disaggregatio 99.9 4.2E-23 9E-28 253.7 24.8 316 222-578 401-781 (857)
41 TIGR03346 chaperone_ClpB ATP-d 99.9 4.8E-22 1E-26 245.2 24.1 358 222-611 396-823 (852)
42 TIGR03345 VI_ClpV1 type VI sec 99.9 8.8E-22 1.9E-26 241.4 22.8 340 223-610 411-827 (852)
43 KOG0742 AAA+-type ATPase [Post 99.9 1.9E-19 4.1E-24 194.5 33.3 198 427-631 385-610 (630)
44 CHL00095 clpC Clp protease ATP 99.8 6.9E-19 1.5E-23 216.7 19.7 266 223-578 402-734 (821)
45 KOG0743 AAA+-type ATPase [Post 99.8 1.3E-18 2.9E-23 192.8 13.6 217 373-605 187-412 (457)
46 PF00004 AAA: ATPase family as 99.8 1.3E-18 2.8E-23 165.9 8.6 130 429-562 1-132 (132)
47 CHL00181 cbbX CbbX; Provisiona 99.7 1.6E-17 3.5E-22 180.8 16.7 223 392-626 22-271 (287)
48 TIGR02881 spore_V_K stage V sp 99.7 2.6E-17 5.6E-22 177.2 17.6 210 392-614 5-239 (261)
49 KOG0744 AAA+-type ATPase [Post 99.7 7.1E-18 1.5E-22 178.5 12.2 201 428-632 179-413 (423)
50 KOG1051 Chaperone HSP104 and r 99.7 1.6E-18 3.5E-23 207.6 5.4 285 188-541 403-711 (898)
51 TIGR02880 cbbX_cfxQ probable R 99.7 7.8E-17 1.7E-21 175.4 16.4 210 394-615 23-255 (284)
52 TIGR00763 lon ATP-dependent pr 99.7 1E-15 2.2E-20 187.7 27.2 188 369-576 290-505 (775)
53 COG0488 Uup ATPase components 99.7 2.1E-16 4.5E-21 184.0 13.3 240 283-543 215-472 (530)
54 COG0466 Lon ATP-dependent Lon 99.7 4.1E-15 9E-20 172.0 23.4 242 372-633 296-584 (782)
55 KOG0736 Peroxisome assembly fa 99.7 6.5E-16 1.4E-20 178.5 16.5 220 408-635 413-655 (953)
56 KOG0735 AAA+-type ATPase [Post 99.7 5.9E-16 1.3E-20 177.3 15.2 237 427-664 432-683 (952)
57 PRK11034 clpA ATP-dependent Cl 99.6 3.4E-16 7.4E-21 189.2 10.4 200 362-577 420-667 (758)
58 TIGR02639 ClpA ATP-dependent C 99.6 9.3E-16 2E-20 187.1 12.1 233 361-611 415-709 (731)
59 COG0464 SpoVK ATPases of the A 99.6 2.6E-14 5.7E-19 167.5 18.8 217 414-635 6-228 (494)
60 TIGR00635 ruvB Holliday juncti 99.6 4.3E-14 9.3E-19 155.3 18.4 210 391-632 2-228 (305)
61 COG2256 MGS1 ATPase related to 99.6 2.6E-14 5.7E-19 156.5 15.3 178 426-634 48-239 (436)
62 PRK00080 ruvB Holliday junctio 99.6 6.2E-14 1.4E-18 155.9 18.3 213 389-633 21-250 (328)
63 PRK10787 DNA-binding ATP-depen 99.6 7E-13 1.5E-17 161.8 28.2 240 371-631 294-580 (784)
64 PF05496 RuvB_N: Holliday junc 99.5 5.4E-14 1.2E-18 145.2 13.7 190 388-609 19-225 (233)
65 KOG2004 Mitochondrial ATP-depe 99.5 6.1E-13 1.3E-17 153.2 22.6 187 371-577 383-597 (906)
66 TIGR02639 ClpA ATP-dependent C 99.5 2.7E-13 5.9E-18 165.6 16.6 198 426-635 203-431 (731)
67 COG2255 RuvB Holliday junction 99.5 7.7E-13 1.7E-17 139.1 17.0 214 388-633 21-251 (332)
68 PRK14956 DNA polymerase III su 99.5 9.3E-13 2E-17 150.6 16.7 204 386-630 11-243 (484)
69 PRK12323 DNA polymerase III su 99.4 5.6E-13 1.2E-17 155.8 14.2 209 387-630 10-246 (700)
70 PRK14962 DNA polymerase III su 99.4 1.5E-12 3.2E-17 150.8 17.3 204 387-631 8-240 (472)
71 PRK11034 clpA ATP-dependent Cl 99.4 1.3E-12 2.9E-17 158.3 17.3 198 426-635 207-435 (758)
72 PRK00149 dnaA chromosomal repl 99.4 7.5E-13 1.6E-17 153.4 14.6 190 427-634 149-350 (450)
73 TIGR02902 spore_lonB ATP-depen 99.4 1.5E-12 3.2E-17 153.4 16.8 215 387-632 59-331 (531)
74 TIGR00362 DnaA chromosomal rep 99.4 1.2E-12 2.7E-17 149.7 15.6 210 427-664 137-358 (405)
75 PRK07003 DNA polymerase III su 99.4 1.5E-12 3.3E-17 153.9 15.7 210 386-630 9-241 (830)
76 PRK14961 DNA polymerase III su 99.4 2.7E-12 5.8E-17 144.8 17.2 210 387-631 10-242 (363)
77 PRK06645 DNA polymerase III su 99.4 2.9E-12 6.3E-17 149.0 16.8 214 386-631 14-254 (507)
78 PRK13342 recombination factor 99.4 8.3E-12 1.8E-16 143.2 19.9 199 389-633 8-219 (413)
79 TIGR02928 orc1/cdc6 family rep 99.4 9.4E-12 2E-16 140.1 19.4 195 425-633 39-274 (365)
80 PRK14960 DNA polymerase III su 99.4 3.2E-12 6.9E-17 149.9 15.7 204 387-631 9-241 (702)
81 PRK14958 DNA polymerase III su 99.4 3.5E-12 7.7E-17 149.1 16.2 204 387-631 10-242 (509)
82 PRK07994 DNA polymerase III su 99.4 5.8E-12 1.3E-16 149.5 16.4 208 388-630 11-241 (647)
83 KOG2028 ATPase related to the 99.4 4.7E-12 1E-16 136.3 14.0 208 388-633 133-368 (554)
84 PRK14964 DNA polymerase III su 99.4 7E-12 1.5E-16 144.9 15.7 203 387-630 7-238 (491)
85 PRK05342 clpX ATP-dependent pr 99.4 1E-11 2.2E-16 141.4 16.8 186 427-614 109-379 (412)
86 PRK04195 replication factor C 99.4 9.5E-12 2.1E-16 145.4 16.7 210 384-630 5-222 (482)
87 PRK14088 dnaA chromosomal repl 99.4 5.9E-12 1.3E-16 145.2 14.5 191 427-634 131-333 (440)
88 PRK08691 DNA polymerase III su 99.4 7.5E-12 1.6E-16 148.0 15.4 211 386-631 9-242 (709)
89 PRK14951 DNA polymerase III su 99.3 1.1E-11 2.3E-16 146.9 16.6 209 387-630 10-246 (618)
90 PRK06893 DNA replication initi 99.3 1.1E-11 2.3E-16 131.2 14.8 180 427-630 40-227 (229)
91 TIGR02903 spore_lon_C ATP-depe 99.3 8.7E-11 1.9E-15 140.6 24.2 214 389-633 150-430 (615)
92 PRK14949 DNA polymerase III su 99.3 1.1E-11 2.4E-16 149.1 16.4 209 387-630 10-241 (944)
93 PRK00411 cdc6 cell division co 99.3 1.5E-11 3.3E-16 139.9 16.5 196 426-634 55-283 (394)
94 KOG0927 Predicted transporter 99.3 6.8E-12 1.5E-16 141.6 12.8 240 284-543 285-542 (614)
95 PRK05563 DNA polymerase III su 99.3 1.7E-11 3.8E-16 145.0 16.9 203 387-630 10-241 (559)
96 TIGR00382 clpX endopeptidase C 99.3 7.3E-12 1.6E-16 142.0 13.1 187 427-615 117-386 (413)
97 PRK14969 DNA polymerase III su 99.3 2E-11 4.3E-16 143.6 16.3 209 388-631 11-242 (527)
98 TIGR03345 VI_ClpV1 type VI sec 99.3 1.3E-11 2.9E-16 152.2 15.5 216 390-630 184-428 (852)
99 PRK12422 chromosomal replicati 99.3 1.7E-11 3.6E-16 141.4 15.3 191 427-634 142-344 (445)
100 PLN03025 replication factor C 99.3 3.5E-11 7.5E-16 133.5 17.0 203 384-629 4-219 (319)
101 PRK14963 DNA polymerase III su 99.3 2.7E-11 5.8E-16 141.5 16.6 203 386-630 7-237 (504)
102 PRK14086 dnaA chromosomal repl 99.3 1.7E-11 3.7E-16 143.8 14.9 190 428-634 316-516 (617)
103 TIGR03420 DnaA_homol_Hda DnaA 99.3 1.6E-11 3.5E-16 128.7 13.3 179 426-630 38-225 (226)
104 TIGR02397 dnaX_nterm DNA polym 99.3 2.7E-11 5.8E-16 135.8 15.7 204 386-630 7-239 (355)
105 PRK07940 DNA polymerase III su 99.3 1.6E-11 3.5E-16 139.2 13.2 185 391-605 3-214 (394)
106 PRK14957 DNA polymerase III su 99.3 3.2E-11 6.9E-16 141.3 15.5 204 387-631 10-242 (546)
107 PRK13341 recombination factor 99.3 7E-11 1.5E-15 142.9 18.6 208 388-633 23-247 (725)
108 PTZ00112 origin recognition co 99.3 6E-11 1.3E-15 140.8 17.2 189 429-636 784-1009(1164)
109 PRK08903 DnaA regulatory inact 99.3 8.9E-11 1.9E-15 123.7 16.6 174 426-631 42-224 (227)
110 PRK14959 DNA polymerase III su 99.3 5E-11 1.1E-15 140.5 16.1 204 386-630 9-241 (624)
111 PRK12402 replication factor C 99.3 9.6E-11 2.1E-15 130.3 17.5 210 385-631 7-247 (337)
112 PRK07764 DNA polymerase III su 99.3 4.4E-11 9.6E-16 146.2 15.6 211 386-630 8-243 (824)
113 PRK14953 DNA polymerase III su 99.3 6.2E-11 1.3E-15 138.0 16.1 210 387-631 10-242 (486)
114 PRK14952 DNA polymerase III su 99.3 3.6E-11 7.8E-16 142.0 14.2 210 387-630 7-241 (584)
115 PRK07133 DNA polymerase III su 99.3 6.8E-11 1.5E-15 141.2 16.5 210 386-630 11-240 (725)
116 PRK14965 DNA polymerase III su 99.2 8.6E-11 1.9E-15 139.8 16.2 202 387-629 10-240 (576)
117 PRK05896 DNA polymerase III su 99.2 5.7E-11 1.2E-15 139.4 14.4 204 386-630 9-241 (605)
118 TIGR02640 gas_vesic_GvpN gas v 99.2 5.9E-11 1.3E-15 128.0 13.0 184 427-635 22-259 (262)
119 CHL00095 clpC Clp protease ATP 99.2 1.3E-10 2.9E-15 143.8 17.9 196 391-611 177-399 (821)
120 PRK09111 DNA polymerase III su 99.2 1.3E-10 2.9E-15 137.9 17.0 211 386-631 17-255 (598)
121 TIGR00390 hslU ATP-dependent p 99.2 9.4E-11 2E-15 131.6 14.8 85 485-573 247-343 (441)
122 PRK10865 protein disaggregatio 99.2 4.3E-11 9.2E-16 148.2 13.2 164 390-578 175-356 (857)
123 PRK14087 dnaA chromosomal repl 99.2 7.2E-11 1.6E-15 136.4 14.1 190 427-633 142-348 (450)
124 PHA02544 44 clamp loader, smal 99.2 6.2E-11 1.3E-15 131.0 12.9 160 384-575 12-172 (316)
125 PRK08084 DNA replication initi 99.2 9.1E-11 2E-15 124.6 13.5 179 427-631 46-234 (235)
126 KOG0066 eIF2-interacting prote 99.2 3E-11 6.5E-16 132.4 9.4 243 283-543 474-737 (807)
127 PRK05642 DNA replication initi 99.2 1.6E-10 3.4E-15 122.7 14.4 178 427-630 46-232 (234)
128 PRK08727 hypothetical protein; 99.2 1.1E-10 2.5E-15 123.7 13.2 180 427-632 42-230 (233)
129 TIGR03346 chaperone_ClpB ATP-d 99.2 1E-10 2.2E-15 145.3 14.8 175 427-614 195-397 (852)
130 PRK14970 DNA polymerase III su 99.2 1.8E-10 4E-15 130.1 15.6 210 387-631 11-231 (367)
131 TIGR01650 PD_CobS cobaltochela 99.2 5.9E-11 1.3E-15 130.1 11.0 136 426-578 64-235 (327)
132 COG2812 DnaX DNA polymerase II 99.2 1.3E-10 2.8E-15 134.1 13.9 209 387-630 10-241 (515)
133 PRK08451 DNA polymerase III su 99.2 1.8E-10 3.8E-15 134.5 14.7 204 386-630 7-239 (535)
134 KOG0989 Replication factor C, 99.2 3.9E-10 8.5E-15 120.1 16.0 192 383-609 26-234 (346)
135 PRK14955 DNA polymerase III su 99.2 2.5E-10 5.3E-15 130.4 15.2 213 387-630 10-254 (397)
136 TIGR02030 BchI-ChlI magnesium 99.2 4.7E-10 1E-14 124.7 16.1 135 486-636 132-312 (337)
137 COG1474 CDC6 Cdc6-related prot 99.2 5.5E-10 1.2E-14 125.6 16.5 196 424-635 40-267 (366)
138 PRK06305 DNA polymerase III su 99.2 6.1E-10 1.3E-14 128.9 16.8 203 387-630 11-243 (451)
139 PRK06647 DNA polymerase III su 99.1 3.4E-10 7.4E-15 133.8 15.0 209 387-630 10-241 (563)
140 PRK05201 hslU ATP-dependent pr 99.1 9.6E-11 2.1E-15 131.5 9.6 85 485-573 249-345 (443)
141 PRK13407 bchI magnesium chelat 99.1 3.5E-10 7.5E-15 125.5 13.7 217 389-634 4-307 (334)
142 PRK14950 DNA polymerase III su 99.1 8.7E-10 1.9E-14 131.7 17.4 210 386-630 9-242 (585)
143 PRK14954 DNA polymerase III su 99.1 8.4E-10 1.8E-14 131.3 16.0 213 387-630 10-254 (620)
144 PRK00440 rfc replication facto 99.1 1.1E-09 2.4E-14 120.8 15.6 203 385-630 9-223 (319)
145 COG0593 DnaA ATPase involved i 99.1 9.4E-10 2E-14 123.8 14.4 191 428-636 115-316 (408)
146 PF00308 Bac_DnaA: Bacterial d 99.1 2.3E-10 4.9E-15 120.3 8.9 169 428-613 36-216 (219)
147 CHL00081 chlI Mg-protoporyphyr 99.1 1.3E-09 2.9E-14 121.3 15.0 221 388-636 12-325 (350)
148 PRK06620 hypothetical protein; 99.1 7.3E-10 1.6E-14 116.0 12.3 164 427-630 45-213 (214)
149 PRK14948 DNA polymerase III su 99.1 1.2E-09 2.6E-14 130.6 15.0 208 386-629 9-241 (620)
150 cd00009 AAA The AAA+ (ATPases 99.1 3.7E-10 8E-15 107.9 8.3 121 426-562 19-151 (151)
151 PRK10636 putative ABC transpor 99.1 5.2E-10 1.1E-14 135.1 11.1 232 286-542 214-462 (638)
152 PF07724 AAA_2: AAA domain (Cd 99.1 2.4E-10 5.3E-15 115.4 6.8 110 428-542 5-131 (171)
153 PRK14971 DNA polymerase III su 99.0 2.9E-09 6.3E-14 127.3 16.0 203 387-630 11-243 (614)
154 PRK09087 hypothetical protein; 99.0 1.3E-09 2.7E-14 115.2 11.1 171 428-633 46-222 (226)
155 PF05673 DUF815: Protein of un 99.0 4.3E-09 9.4E-14 110.5 14.9 192 387-608 21-244 (249)
156 TIGR03015 pepcterm_ATPase puta 99.0 5.9E-09 1.3E-13 112.3 15.0 189 429-633 46-266 (269)
157 PRK11147 ABC transporter ATPas 99.0 1.5E-09 3.4E-14 131.1 11.3 233 286-542 221-472 (635)
158 COG0714 MoxR-like ATPases [Gen 99.0 2.9E-09 6.2E-14 118.7 11.7 128 426-573 43-199 (329)
159 TIGR02442 Cob-chelat-sub cobal 99.0 8.3E-09 1.8E-13 124.4 15.9 190 427-635 26-306 (633)
160 TIGR00678 holB DNA polymerase 98.9 3.7E-09 8.1E-14 108.1 11.0 145 424-597 12-184 (188)
161 PF07728 AAA_5: AAA domain (dy 98.9 4.9E-10 1.1E-14 108.7 4.1 109 428-554 1-139 (139)
162 smart00350 MCM minichromosome 98.9 1.1E-08 2.4E-13 120.4 16.0 190 428-635 238-506 (509)
163 TIGR02031 BchD-ChlD magnesium 98.9 8.5E-09 1.8E-13 123.1 15.0 192 427-635 17-260 (589)
164 PRK13531 regulatory ATPase Rav 98.9 7.8E-09 1.7E-13 118.5 13.5 194 426-636 39-286 (498)
165 smart00382 AAA ATPases associa 98.9 2.4E-09 5.3E-14 101.0 8.0 123 427-563 3-147 (148)
166 PHA02244 ATPase-like protein 98.9 1.9E-08 4.1E-13 111.8 15.6 123 428-572 121-269 (383)
167 COG1224 TIP49 DNA helicase TIP 98.9 1.8E-08 4E-13 109.1 14.8 129 486-634 292-433 (450)
168 TIGR00368 Mg chelatase-related 98.9 1.6E-08 3.5E-13 118.0 13.0 186 427-631 212-497 (499)
169 COG1219 ClpX ATP-dependent pro 98.8 1E-08 2.2E-13 109.6 9.5 95 428-525 99-202 (408)
170 PRK05707 DNA polymerase III su 98.8 1.5E-08 3.2E-13 112.7 11.1 152 423-599 19-198 (328)
171 PRK05564 DNA polymerase III su 98.8 2.4E-08 5.3E-13 110.5 12.7 172 391-599 2-185 (313)
172 PRK07471 DNA polymerase III su 98.8 2.9E-08 6.2E-13 111.9 13.4 180 388-600 14-234 (365)
173 PRK09112 DNA polymerase III su 98.8 2.9E-08 6.4E-13 111.3 13.1 180 389-599 19-235 (351)
174 PRK04132 replication factor C 98.8 3.1E-08 6.6E-13 120.9 13.2 177 423-630 560-751 (846)
175 KOG0745 Putative ATP-dependent 98.8 5.9E-08 1.3E-12 107.4 13.4 95 428-525 228-331 (564)
176 PRK09862 putative ATP-dependen 98.8 5.3E-08 1.2E-12 113.4 13.5 187 427-632 211-491 (506)
177 PRK11331 5-methylcytosine-spec 98.7 2E-08 4.3E-13 114.3 8.6 121 426-562 194-357 (459)
178 COG0470 HolB ATPase involved i 98.7 5.7E-08 1.2E-12 107.2 11.6 129 424-573 22-178 (325)
179 KOG0062 ATPase component of AB 98.7 3E-08 6.6E-13 112.0 9.0 230 287-543 264-515 (582)
180 KOG0741 AAA+-type ATPase [Post 98.7 4.8E-08 1E-12 110.2 10.3 142 427-574 539-684 (744)
181 COG1220 HslU ATP-dependent pro 98.7 4.4E-08 9.5E-13 105.5 9.3 84 486-573 251-346 (444)
182 PLN03073 ABC transporter F fam 98.7 5.6E-08 1.2E-12 118.5 10.2 232 286-542 409-659 (718)
183 PF07726 AAA_3: ATPase family 98.6 7.4E-09 1.6E-13 98.5 1.4 104 428-554 1-129 (131)
184 TIGR00764 lon_rel lon-related 98.6 2.5E-07 5.5E-12 110.8 14.4 102 531-634 268-392 (608)
185 PF01078 Mg_chelatase: Magnesi 98.6 3.9E-08 8.5E-13 101.3 6.3 143 391-566 1-205 (206)
186 PRK07399 DNA polymerase III su 98.6 1.9E-07 4.2E-12 103.3 11.7 179 391-602 2-219 (314)
187 PRK15064 ABC transporter ATP-b 98.6 1.5E-07 3.2E-12 111.8 11.4 135 401-542 318-470 (530)
188 KOG1969 DNA replication checkp 98.6 1.8E-07 3.9E-12 109.3 11.5 168 429-618 329-520 (877)
189 PRK06964 DNA polymerase III su 98.6 7.2E-08 1.6E-12 107.4 7.8 133 424-575 19-203 (342)
190 PRK06871 DNA polymerase III su 98.6 2E-07 4.3E-12 103.3 11.2 133 424-575 22-178 (325)
191 TIGR00602 rad24 checkpoint pro 98.6 2.2E-07 4.8E-12 110.8 12.2 221 384-630 75-352 (637)
192 PRK07993 DNA polymerase III su 98.6 1.8E-07 3.9E-12 104.3 10.8 152 423-600 21-200 (334)
193 COG0542 clpA ATP-binding subun 98.6 4.3E-07 9.3E-12 109.1 14.4 175 429-615 194-395 (786)
194 PF05621 TniB: Bacterial TniB 98.6 1.1E-06 2.5E-11 95.2 15.6 215 396-629 37-285 (302)
195 COG2607 Predicted ATPase (AAA+ 98.6 1.6E-06 3.5E-11 90.0 15.4 193 387-609 54-277 (287)
196 PRK08058 DNA polymerase III su 98.5 2E-07 4.4E-12 104.0 9.2 127 424-574 26-180 (329)
197 COG1239 ChlI Mg-chelatase subu 98.5 5.7E-07 1.2E-11 100.6 12.5 189 427-634 39-323 (423)
198 PRK08769 DNA polymerase III su 98.5 3.7E-07 8E-12 101.0 10.4 156 423-602 23-206 (319)
199 TIGR01817 nifA Nif-specific re 98.5 6.3E-07 1.4E-11 106.5 12.4 207 389-627 192-439 (534)
200 KOG0991 Replication factor C, 98.5 3.8E-07 8.3E-12 93.9 8.5 209 383-630 17-234 (333)
201 COG3829 RocR Transcriptional r 98.5 7.8E-07 1.7E-11 102.0 11.8 212 387-630 239-495 (560)
202 PRK13406 bchD magnesium chelat 98.5 1.4E-06 3.1E-11 103.5 14.2 192 427-635 26-252 (584)
203 KOG1942 DNA helicase, TBP-inte 98.5 1.2E-06 2.6E-11 92.9 11.8 132 484-635 295-440 (456)
204 PRK15424 propionate catabolism 98.5 1.1E-06 2.4E-11 103.5 12.9 207 390-626 216-478 (538)
205 PTZ00111 DNA replication licen 98.5 2.1E-06 4.5E-11 104.8 15.4 126 427-571 493-652 (915)
206 TIGR02974 phageshock_pspF psp 98.5 1.6E-06 3.4E-11 96.8 13.4 176 427-625 23-242 (329)
207 PRK06090 DNA polymerase III su 98.4 6E-07 1.3E-11 99.2 8.7 130 423-574 22-178 (319)
208 TIGR02329 propionate_PrpR prop 98.4 1.7E-06 3.8E-11 101.9 13.1 211 390-628 209-465 (526)
209 PRK05022 anaerobic nitric oxid 98.4 1.7E-06 3.8E-11 102.1 13.0 193 392-614 186-421 (509)
210 smart00763 AAA_PrkA PrkA AAA d 98.4 1.9E-06 4E-11 96.0 12.1 68 391-465 48-128 (361)
211 PRK11608 pspF phage shock prot 98.4 1.4E-06 3.1E-11 97.1 11.2 191 392-612 5-239 (326)
212 PRK11819 putative ABC transpor 98.4 4E-07 8.6E-12 108.7 7.1 135 402-542 324-477 (556)
213 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 6.5E-07 1.4E-11 106.8 8.5 135 402-542 322-475 (552)
214 COG1116 TauB ABC-type nitrate/ 98.4 1.6E-07 3.5E-12 98.7 2.7 50 410-459 11-62 (248)
215 KOG1514 Origin recognition com 98.4 4.1E-06 8.9E-11 98.1 14.4 190 428-634 424-656 (767)
216 COG0606 Predicted ATPase with 98.4 6.5E-07 1.4E-11 101.4 7.5 210 389-631 175-483 (490)
217 PF13177 DNA_pol3_delta2: DNA 98.4 7.6E-07 1.7E-11 89.3 6.9 117 424-562 17-160 (162)
218 COG1221 PspF Transcriptional r 98.4 1.5E-06 3.4E-11 97.9 10.1 197 388-614 73-310 (403)
219 PRK08699 DNA polymerase III su 98.3 7.4E-07 1.6E-11 99.1 7.4 132 424-574 19-183 (325)
220 PRK06835 DNA replication prote 98.3 1.1E-05 2.3E-10 89.9 16.1 67 210-276 15-86 (329)
221 COG2204 AtoC Response regulato 98.3 2.2E-06 4.8E-11 98.2 11.0 204 391-627 139-385 (464)
222 PRK11388 DNA-binding transcrip 98.3 3.7E-06 8.1E-11 102.1 13.1 208 390-630 322-568 (638)
223 PRK10820 DNA-binding transcrip 98.3 5.9E-06 1.3E-10 97.8 13.7 206 388-626 199-447 (520)
224 PF06068 TIP49: TIP49 C-termin 98.3 2.2E-06 4.7E-11 94.8 8.9 102 486-607 279-393 (398)
225 PRK08116 hypothetical protein; 98.2 8E-07 1.7E-11 96.3 4.6 128 427-573 115-257 (268)
226 COG3604 FhlA Transcriptional r 98.2 3.7E-05 8.1E-10 87.5 17.8 195 389-613 219-456 (550)
227 PF00158 Sigma54_activat: Sigm 98.2 3.5E-06 7.5E-11 85.1 8.8 97 427-540 23-143 (168)
228 PRK15429 formate hydrogenlyase 98.2 9.9E-06 2.2E-10 99.2 14.1 195 390-612 373-608 (686)
229 COG1120 FepC ABC-type cobalami 98.2 1.5E-06 3.4E-11 92.7 5.6 129 408-542 8-170 (258)
230 KOG2227 Pre-initiation complex 98.2 2.8E-05 6.1E-10 87.7 15.0 182 422-616 171-382 (529)
231 PRK06526 transposase; Provisio 98.2 4E-06 8.7E-11 90.2 7.9 71 426-498 98-172 (254)
232 PF00493 MCM: MCM2/3/5 family 98.1 2.8E-06 6E-11 94.9 6.0 190 428-634 59-327 (331)
233 COG1126 GlnQ ABC-type polar am 98.1 1.3E-06 2.7E-11 89.9 2.8 55 405-459 5-61 (240)
234 PRK07952 DNA replication prote 98.1 2.5E-05 5.4E-10 83.5 12.7 69 427-497 100-174 (244)
235 PRK08181 transposase; Validate 98.1 5.4E-06 1.2E-10 89.8 7.6 71 426-498 106-180 (269)
236 KOG2035 Replication factor C, 98.1 2.4E-05 5.2E-10 83.0 12.0 157 427-602 35-226 (351)
237 PRK09183 transposase/IS protei 98.1 3.8E-06 8.2E-11 90.7 6.0 70 427-497 103-176 (259)
238 COG3842 PotA ABC-type spermidi 98.1 6.9E-07 1.5E-11 99.3 0.3 56 406-461 9-66 (352)
239 cd03222 ABC_RNaseL_inhibitor T 98.1 1.5E-06 3.3E-11 88.4 2.4 75 423-497 20-101 (177)
240 COG0488 Uup ATPase components 98.1 1.9E-06 4E-11 101.4 3.4 56 406-461 7-64 (530)
241 COG3839 MalK ABC-type sugar tr 98.1 8.6E-07 1.9E-11 98.1 0.5 55 407-461 8-64 (338)
242 COG1241 MCM2 Predicted ATPase 98.1 8.3E-06 1.8E-10 97.4 8.8 222 392-635 285-594 (682)
243 PRK12377 putative replication 98.1 3.5E-05 7.5E-10 82.6 12.7 69 427-497 102-175 (248)
244 KOG2680 DNA helicase TIP49, TB 98.1 3E-05 6.6E-10 82.7 11.9 91 541-634 339-430 (454)
245 KOG0990 Replication factor C, 98.1 1.7E-05 3.6E-10 85.8 10.0 159 428-609 64-233 (360)
246 COG4559 ABC-type hemin transpo 98.1 3.4E-06 7.4E-11 86.4 4.5 51 410-460 9-61 (259)
247 PF13401 AAA_22: AAA domain; P 98.1 8.4E-06 1.8E-10 77.6 7.0 71 428-498 6-100 (131)
248 PF13173 AAA_14: AAA domain 98.0 8.8E-06 1.9E-10 78.1 6.9 68 428-497 4-73 (128)
249 TIGR02915 PEP_resp_reg putativ 98.0 2.9E-05 6.3E-10 90.1 12.1 177 427-626 163-382 (445)
250 COG1118 CysA ABC-type sulfate/ 98.0 4.5E-06 9.7E-11 89.8 4.4 56 406-461 6-63 (345)
251 cd03216 ABC_Carb_Monos_I This 98.0 8.1E-06 1.8E-10 81.8 6.0 82 416-497 14-112 (163)
252 PRK05917 DNA polymerase III su 98.0 1.5E-05 3.1E-10 86.9 8.1 119 423-563 16-154 (290)
253 KOG0480 DNA replication licens 98.0 6.4E-05 1.4E-09 87.3 13.5 226 390-636 342-646 (764)
254 COG1134 TagH ABC-type polysacc 98.0 7.9E-06 1.7E-10 85.7 5.5 46 416-461 41-88 (249)
255 COG1121 ZnuC ABC-type Mn/Zn tr 98.0 6.3E-06 1.4E-10 87.7 4.8 124 406-535 8-163 (254)
256 cd03259 ABC_Carb_Solutes_like 98.0 2.2E-06 4.7E-11 89.4 1.2 48 412-459 10-59 (213)
257 PRK13765 ATP-dependent proteas 98.0 3E-05 6.4E-10 93.2 10.5 100 531-632 277-399 (637)
258 KOG0478 DNA replication licens 97.9 8.9E-05 1.9E-09 86.7 13.7 125 428-566 464-616 (804)
259 COG4133 CcmA ABC-type transpor 97.9 2.4E-05 5.1E-10 79.0 7.7 48 413-460 13-62 (209)
260 COG4619 ABC-type uncharacteriz 97.9 2.8E-05 6.1E-10 77.0 8.0 56 403-458 4-61 (223)
261 PF01695 IstB_IS21: IstB-like 97.9 4.6E-06 9.9E-11 85.0 2.6 69 426-496 47-119 (178)
262 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 1.2E-05 2.6E-10 78.9 5.2 81 417-497 15-100 (144)
263 cd03214 ABC_Iron-Siderophores_ 97.9 3.8E-06 8.3E-11 85.4 1.6 43 416-458 13-57 (180)
264 cd00267 ABC_ATPase ABC (ATP-bi 97.9 9.7E-06 2.1E-10 80.4 4.5 80 417-497 14-110 (157)
265 PF01637 Arch_ATPase: Archaeal 97.9 1.2E-05 2.5E-10 83.8 5.3 160 427-598 21-228 (234)
266 cd03230 ABC_DR_subfamily_A Thi 97.9 1.3E-05 2.7E-10 81.1 5.0 41 417-457 15-57 (173)
267 PF03215 Rad17: Rad17 cell cyc 97.9 0.0001 2.2E-09 86.8 13.1 170 428-614 47-269 (519)
268 cd03226 ABC_cobalt_CbiO_domain 97.9 3.9E-06 8.5E-11 87.0 1.0 44 416-459 14-59 (205)
269 cd03301 ABC_MalK_N The N-termi 97.9 4.4E-06 9.4E-11 87.1 1.4 45 415-459 13-59 (213)
270 cd03228 ABCC_MRP_Like The MRP 97.9 1.7E-05 3.7E-10 80.0 5.5 42 417-458 17-60 (171)
271 TIGR01818 ntrC nitrogen regula 97.8 3.4E-05 7.4E-10 89.9 8.3 184 428-630 159-381 (463)
272 PRK08939 primosomal protein Dn 97.8 1.7E-05 3.6E-10 87.7 5.1 69 426-496 156-228 (306)
273 cd03223 ABCD_peroxisomal_ALDP 97.8 2.5E-05 5.4E-10 78.5 5.9 43 417-459 16-60 (166)
274 cd03247 ABCC_cytochrome_bd The 97.8 1.6E-05 3.4E-10 80.7 4.4 42 417-458 17-60 (178)
275 cd03225 ABC_cobalt_CbiO_domain 97.8 5.7E-06 1.2E-10 86.1 1.2 44 416-459 15-60 (211)
276 COG1484 DnaC DNA replication p 97.8 2E-05 4.2E-10 84.9 5.2 70 426-497 105-179 (254)
277 PRK11361 acetoacetate metaboli 97.8 6.8E-05 1.5E-09 87.2 10.1 180 427-629 167-389 (457)
278 PF03969 AFG1_ATPase: AFG1-lik 97.8 1.9E-05 4.2E-10 89.0 5.3 142 422-590 58-207 (362)
279 COG1122 CbiO ABC-type cobalt t 97.8 6.8E-06 1.5E-10 87.2 1.5 44 416-459 18-63 (235)
280 PF05729 NACHT: NACHT domain 97.8 8.8E-05 1.9E-09 73.1 9.3 139 429-578 3-165 (166)
281 cd03246 ABCC_Protease_Secretio 97.8 3.2E-05 7E-10 78.1 6.1 42 417-458 17-60 (173)
282 COG2884 FtsE Predicted ATPase 97.8 3.4E-05 7.3E-10 78.0 6.0 57 405-461 4-63 (223)
283 cd01120 RecA-like_NTPases RecA 97.8 7.3E-05 1.6E-09 73.1 8.4 72 429-500 2-100 (165)
284 COG1127 Ttg2A ABC-type transpo 97.8 8.2E-06 1.8E-10 85.2 1.7 57 401-457 7-65 (263)
285 PRK11247 ssuB aliphatic sulfon 97.8 3.7E-05 8E-10 83.0 6.7 45 415-459 25-71 (257)
286 COG1131 CcmA ABC-type multidru 97.8 2.1E-05 4.5E-10 86.5 4.8 55 406-460 8-65 (293)
287 cd03294 ABC_Pro_Gly_Bertaine T 97.8 2.2E-05 4.8E-10 85.1 4.9 54 405-458 27-82 (269)
288 cd03269 ABC_putative_ATPase Th 97.8 2E-05 4.4E-10 82.0 4.2 44 416-459 14-59 (210)
289 COG2274 SunT ABC-type bacterio 97.8 3.7E-05 7.9E-10 93.5 7.0 133 404-543 473-642 (709)
290 cd03218 ABC_YhbG The ABC trans 97.7 7.1E-06 1.5E-10 86.7 0.5 45 414-458 12-58 (232)
291 PRK13537 nodulation ABC transp 97.7 4.6E-06 1E-10 92.2 -1.2 53 407-459 12-66 (306)
292 COG1124 DppF ABC-type dipeptid 97.7 1.9E-05 4.2E-10 82.7 3.4 45 417-461 22-68 (252)
293 PRK11432 fbpC ferric transport 97.7 1.8E-05 3.9E-10 89.1 3.4 44 416-459 20-65 (351)
294 PF14532 Sigma54_activ_2: Sigm 97.7 6.2E-05 1.4E-09 73.2 6.6 85 427-540 22-109 (138)
295 TIGR00960 3a0501s02 Type II (G 97.7 2.6E-05 5.6E-10 81.5 4.2 43 417-459 18-62 (216)
296 PRK10923 glnG nitrogen regulat 97.7 7.9E-05 1.7E-09 87.1 8.7 180 428-629 163-384 (469)
297 COG0410 LivF ABC-type branched 97.7 3.2E-05 6.8E-10 80.6 4.7 124 406-535 7-160 (237)
298 PRK11147 ABC transporter ATPas 97.7 2.8E-05 6E-10 94.5 5.0 52 408-459 9-62 (635)
299 COG1119 ModF ABC-type molybden 97.7 2.3E-05 4.9E-10 82.3 3.6 51 401-451 30-82 (257)
300 COG4586 ABC-type uncharacteriz 97.7 4.8E-05 1E-09 80.8 6.0 44 418-461 40-85 (325)
301 PRK10636 putative ABC transpor 97.7 1.2E-05 2.5E-10 97.7 1.6 50 410-459 9-60 (638)
302 COG5271 MDN1 AAA ATPase contai 97.7 0.00015 3.2E-09 90.6 10.6 135 425-577 1542-1704(4600)
303 PRK13543 cytochrome c biogenes 97.7 1.3E-05 2.9E-10 83.8 1.6 50 411-460 20-71 (214)
304 cd03238 ABC_UvrA The excision 97.7 5.7E-05 1.2E-09 76.8 6.2 32 417-448 10-43 (176)
305 TIGR01188 drrA daunorubicin re 97.7 2.7E-05 5.8E-10 85.9 4.0 45 415-459 6-52 (302)
306 PRK11650 ugpC glycerol-3-phosp 97.7 2.2E-05 4.8E-10 88.6 3.3 44 417-460 19-64 (356)
307 PRK06921 hypothetical protein; 97.7 3.8E-05 8.2E-10 83.2 4.9 67 426-495 117-187 (266)
308 cd03229 ABC_Class3 This class 97.7 2E-05 4.4E-10 79.9 2.6 43 416-458 14-58 (178)
309 TIGR01288 nodI ATP-binding ABC 97.7 9.6E-06 2.1E-10 89.5 0.3 49 411-459 13-63 (303)
310 cd03267 ABC_NatA_like Similar 97.7 2.9E-05 6.4E-10 82.5 3.9 49 411-459 30-80 (236)
311 cd03268 ABC_BcrA_bacitracin_re 97.7 2.8E-05 6.1E-10 80.7 3.7 45 415-459 13-59 (208)
312 cd03215 ABC_Carb_Monos_II This 97.7 3.1E-05 6.6E-10 79.0 3.9 43 417-459 15-59 (182)
313 PRK11000 maltose/maltodextrin 97.7 2.1E-05 4.7E-10 89.2 3.0 44 416-459 17-62 (369)
314 PRK15115 response regulator Gl 97.7 0.00014 3.1E-09 84.3 9.7 179 428-629 159-380 (444)
315 PRK13638 cbiO cobalt transport 97.7 3.5E-05 7.6E-10 83.6 4.2 45 415-459 14-60 (271)
316 PRK09544 znuC high-affinity zi 97.6 3.9E-05 8.6E-10 82.4 4.3 47 414-460 16-64 (251)
317 PRK07276 DNA polymerase III su 97.6 0.00027 5.9E-09 77.3 10.7 128 424-573 22-172 (290)
318 cd03266 ABC_NatA_sodium_export 97.6 3.4E-05 7.4E-10 80.6 3.5 44 416-459 19-64 (218)
319 PRK10365 transcriptional regul 97.6 0.00015 3.2E-09 84.0 9.0 183 427-629 163-385 (441)
320 PRK05818 DNA polymerase III su 97.6 0.00013 2.8E-09 78.2 7.7 121 424-563 5-147 (261)
321 KOG1970 Checkpoint RAD17-RFC c 97.6 0.0007 1.5E-08 78.0 14.0 170 429-613 113-320 (634)
322 TIGR03265 PhnT2 putative 2-ami 97.6 3.4E-05 7.4E-10 87.0 3.4 48 412-459 14-63 (353)
323 COG3840 ThiQ ABC-type thiamine 97.6 6.1E-05 1.3E-09 75.7 4.7 41 420-460 17-59 (231)
324 PF00005 ABC_tran: ABC transpo 97.6 2.7E-05 5.9E-10 75.0 2.2 41 420-460 3-45 (137)
325 cd03213 ABCG_EPDR ABCG transpo 97.6 6.7E-05 1.4E-09 77.4 5.1 44 416-459 23-70 (194)
326 PRK13541 cytochrome c biogenes 97.6 3.5E-05 7.6E-10 79.3 2.9 39 421-459 19-59 (195)
327 COG3267 ExeA Type II secretory 97.6 0.0011 2.3E-08 70.3 13.8 181 429-627 54-267 (269)
328 cd03283 ABC_MutS-like MutS-lik 97.6 0.00015 3.3E-09 75.2 7.5 32 419-450 18-49 (199)
329 cd03231 ABC_CcmA_heme_exporter 97.6 0.00014 3.1E-09 75.2 7.3 43 416-458 14-58 (201)
330 PRK11607 potG putrescine trans 97.6 1.4E-05 3.1E-10 90.7 -0.3 44 416-459 33-78 (377)
331 PRK13538 cytochrome c biogenes 97.6 5E-05 1.1E-09 78.8 3.6 45 415-459 14-60 (204)
332 PRK09452 potA putrescine/sperm 97.6 4.4E-05 9.5E-10 86.7 3.3 43 417-459 29-73 (375)
333 PRK13536 nodulation factor exp 97.6 1.7E-05 3.6E-10 89.1 -0.1 57 403-459 42-100 (340)
334 TIGR03258 PhnT 2-aminoethylpho 97.6 4.2E-05 9.1E-10 86.5 3.0 44 416-459 19-66 (362)
335 TIGR01189 ccmA heme ABC export 97.5 5.8E-05 1.3E-09 77.9 3.8 45 414-458 12-58 (198)
336 PRK11176 lipid transporter ATP 97.5 0.0001 2.2E-09 88.6 6.1 45 416-460 357-403 (582)
337 TIGR03522 GldA_ABC_ATP gliding 97.5 5.7E-05 1.2E-09 83.4 3.6 48 412-459 12-61 (301)
338 PRK11153 metN DL-methionine tr 97.5 2.2E-05 4.7E-10 88.3 0.2 44 416-459 19-64 (343)
339 TIGR03797 NHPM_micro_ABC2 NHPM 97.5 0.00011 2.3E-09 90.3 6.2 55 405-459 454-512 (686)
340 PRK11819 putative ABC transpor 97.5 3.3E-05 7.2E-10 92.3 1.7 53 407-459 11-66 (556)
341 TIGR02868 CydC thiol reductant 97.5 0.00012 2.5E-09 87.1 6.3 44 417-460 350-395 (529)
342 PLN03210 Resistant to P. syrin 97.5 0.00064 1.4E-08 88.2 13.3 178 390-600 181-391 (1153)
343 PF00910 RNA_helicase: RNA hel 97.5 8.9E-05 1.9E-09 69.0 4.1 62 429-498 1-62 (107)
344 PRK10070 glycine betaine trans 97.5 5.7E-05 1.2E-09 86.4 3.2 56 404-459 30-87 (400)
345 cd03233 ABC_PDR_domain1 The pl 97.5 7.3E-05 1.6E-09 77.6 3.7 44 416-459 21-69 (202)
346 COG1136 SalX ABC-type antimicr 97.5 0.00011 2.3E-09 77.3 4.9 42 416-457 19-62 (226)
347 PRK13640 cbiO cobalt transport 97.5 5.6E-05 1.2E-09 82.6 3.0 37 417-453 22-60 (282)
348 cd03300 ABC_PotA_N PotA is an 97.5 9.2E-05 2E-09 78.4 4.5 45 415-459 13-59 (232)
349 cd03254 ABCC_Glucan_exporter_l 97.5 0.00025 5.3E-09 74.8 7.5 43 417-459 18-62 (229)
350 PRK11174 cysteine/glutathione 97.5 0.00012 2.5E-09 88.3 5.6 44 416-460 364-409 (588)
351 PF12774 AAA_6: Hydrolytic ATP 97.5 0.00027 5.9E-09 75.0 7.6 67 426-499 32-98 (231)
352 TIGR02237 recomb_radB DNA repa 97.5 0.00032 7E-09 72.8 8.1 108 429-539 15-148 (209)
353 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 2.4E-05 5.2E-10 81.8 -0.6 44 416-459 18-63 (218)
354 cd03217 ABC_FeS_Assembly ABC-t 97.5 0.00013 2.7E-09 75.6 4.8 43 416-458 14-60 (200)
355 KOG0482 DNA replication licens 97.4 0.0025 5.5E-08 72.6 15.2 224 395-636 344-641 (721)
356 COG4555 NatA ABC-type Na+ tran 97.4 0.00016 3.6E-09 73.7 5.4 42 418-459 18-61 (245)
357 TIGR03796 NHPM_micro_ABC1 NHPM 97.4 0.00017 3.7E-09 88.8 6.8 56 405-460 480-539 (710)
358 PF00931 NB-ARC: NB-ARC domain 97.4 0.00021 4.5E-09 77.6 6.6 150 427-598 20-196 (287)
359 KOG0057 Mitochondrial Fe/S clu 97.4 0.00026 5.7E-09 81.5 7.5 118 416-542 366-519 (591)
360 PF12775 AAA_7: P-loop contain 97.4 6.2E-05 1.3E-09 81.9 2.3 143 426-578 33-195 (272)
361 COG4987 CydC ABC-type transpor 97.4 0.00014 3.1E-09 83.5 5.2 60 402-461 336-399 (573)
362 cd03237 ABC_RNaseL_inhibitor_d 97.4 0.00028 6E-09 75.7 7.1 32 429-460 28-59 (246)
363 PRK13635 cbiO cobalt transport 97.4 8.4E-05 1.8E-09 81.1 3.2 43 417-459 22-66 (279)
364 PRK09536 btuD corrinoid ABC tr 97.4 6.8E-05 1.5E-09 85.8 2.5 50 410-459 11-62 (402)
365 COG4178 ABC-type uncharacteriz 97.4 0.00017 3.7E-09 85.1 5.9 117 416-542 407-547 (604)
366 PRK12726 flagellar biosynthesi 97.4 0.0056 1.2E-07 69.1 17.5 37 426-462 206-245 (407)
367 PRK10851 sulfate/thiosulfate t 97.4 9.9E-05 2.1E-09 83.3 3.8 44 416-459 16-61 (353)
368 PRK13647 cbiO cobalt transport 97.4 0.0001 2.2E-09 80.2 3.6 43 417-459 20-64 (274)
369 cd03232 ABC_PDR_domain2 The pl 97.4 5.7E-05 1.2E-09 77.7 1.5 34 417-450 22-57 (192)
370 PRK13650 cbiO cobalt transport 97.4 9.5E-05 2.1E-09 80.7 3.3 43 417-459 22-66 (279)
371 COG4525 TauB ABC-type taurine 97.4 0.00023 5E-09 72.3 5.7 42 417-458 20-63 (259)
372 cd03298 ABC_ThiQ_thiamine_tran 97.4 0.00012 2.7E-09 76.1 3.9 40 420-459 16-57 (211)
373 PRK13652 cbiO cobalt transport 97.4 0.00011 2.3E-09 80.2 3.5 43 417-459 19-63 (277)
374 TIGR03719 ABC_ABC_ChvD ATP-bin 97.4 6.5E-05 1.4E-09 89.8 2.0 46 414-459 17-64 (552)
375 PRK13546 teichoic acids export 97.4 0.0002 4.4E-09 77.5 5.6 45 415-459 37-83 (264)
376 PRK13643 cbiO cobalt transport 97.4 9.2E-05 2E-09 81.2 2.9 43 417-459 21-65 (288)
377 cd03235 ABC_Metallic_Cations A 97.4 5.5E-05 1.2E-09 78.8 1.1 49 411-459 8-58 (213)
378 PRK13648 cbiO cobalt transport 97.4 0.00011 2.4E-09 79.7 3.4 43 417-459 24-68 (269)
379 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.4 0.00012 2.6E-09 77.3 3.5 57 403-459 23-81 (224)
380 TIGR02203 MsbA_lipidA lipid A 97.4 0.00022 4.7E-09 85.5 6.1 44 417-460 347-392 (571)
381 TIGR03608 L_ocin_972_ABC putat 97.4 4.8E-05 1E-09 78.8 0.4 49 412-460 8-58 (206)
382 PRK13632 cbiO cobalt transport 97.4 0.00012 2.7E-09 79.4 3.7 42 417-458 24-67 (271)
383 PRK13409 putative ATPase RIL; 97.4 0.00025 5.4E-09 85.3 6.5 117 418-541 355-484 (590)
384 PRK13644 cbiO cobalt transport 97.4 9.3E-05 2E-09 80.5 2.6 42 417-458 17-60 (274)
385 TIGR03269 met_CoM_red_A2 methy 97.4 4.1E-05 8.8E-10 90.8 -0.3 47 412-458 10-60 (520)
386 PRK13651 cobalt transporter AT 97.3 9.9E-05 2.1E-09 81.6 2.7 43 417-459 22-66 (305)
387 cd01130 VirB11-like_ATPase Typ 97.3 0.00017 3.8E-09 73.8 4.1 71 426-496 25-111 (186)
388 cd03258 ABC_MetN_methionine_tr 97.3 4.4E-05 9.6E-10 80.7 -0.3 44 416-459 19-64 (233)
389 TIGR01186 proV glycine betaine 97.3 0.00011 2.3E-09 83.2 2.7 46 413-458 4-51 (363)
390 TIGR02858 spore_III_AA stage I 97.3 0.00042 9E-09 75.3 7.1 68 427-494 112-203 (270)
391 TIGR01277 thiQ thiamine ABC tr 97.3 0.0002 4.4E-09 74.7 4.6 41 419-459 15-57 (213)
392 PRK13636 cbiO cobalt transport 97.3 0.00013 2.9E-09 79.6 3.3 44 416-459 20-65 (283)
393 TIGR03375 type_I_sec_LssB type 97.3 0.0003 6.5E-09 86.5 6.6 45 416-460 479-525 (694)
394 TIGR02315 ABC_phnC phosphonate 97.3 6.9E-05 1.5E-09 79.7 0.9 45 415-459 15-61 (243)
395 PRK07132 DNA polymerase III su 97.3 0.001 2.3E-08 73.2 10.1 127 424-574 16-160 (299)
396 PF13207 AAA_17: AAA domain; P 97.3 0.00014 3.1E-09 68.4 2.8 30 429-458 2-31 (121)
397 PRK10247 putative ABC transpor 97.3 6.2E-05 1.3E-09 79.4 0.4 49 412-460 17-67 (225)
398 COG4608 AppF ABC-type oligopep 97.3 0.00031 6.6E-09 75.2 5.5 82 419-500 30-142 (268)
399 TIGR02314 ABC_MetN D-methionin 97.3 0.00014 3.1E-09 81.7 3.1 43 417-459 20-64 (343)
400 cd03219 ABC_Mj1267_LivG_branch 97.3 6.9E-05 1.5E-09 79.3 0.6 48 412-459 10-59 (236)
401 TIGR01193 bacteriocin_ABC ABC- 97.3 0.00031 6.7E-09 86.5 6.3 55 406-460 477-534 (708)
402 cd03224 ABC_TM1139_LivF_branch 97.3 4.7E-05 1E-09 79.8 -0.9 44 416-459 14-59 (222)
403 cd03261 ABC_Org_Solvent_Resist 97.3 0.00015 3.2E-09 76.9 2.8 45 415-459 13-59 (235)
404 COG1117 PstB ABC-type phosphat 97.3 0.00036 7.7E-09 72.0 5.4 46 403-448 8-55 (253)
405 TIGR00958 3a01208 Conjugate Tr 97.3 0.00037 8E-09 85.9 6.7 44 416-459 495-540 (711)
406 PRK13637 cbiO cobalt transport 97.3 0.00017 3.8E-09 79.0 3.5 42 417-458 22-65 (287)
407 KOG0058 Peptide exporter, ABC 97.3 0.00048 1.1E-08 81.9 7.3 133 403-543 466-637 (716)
408 PRK10982 galactose/methyl gala 97.3 0.00023 5E-09 83.8 4.7 48 412-459 8-57 (491)
409 TIGR01166 cbiO cobalt transpor 97.3 0.00016 3.6E-09 74.0 3.0 44 416-459 6-51 (190)
410 cd03293 ABC_NrtD_SsuB_transpor 97.3 4.6E-05 9.9E-10 79.9 -1.2 44 416-459 18-63 (220)
411 TIGR02673 FtsE cell division A 97.3 7E-05 1.5E-09 78.1 0.1 44 416-459 16-61 (214)
412 COG4604 CeuD ABC-type enteroch 97.3 0.00038 8.2E-09 70.9 5.3 57 404-460 3-61 (252)
413 COG1485 Predicted ATPase [Gene 97.2 0.00051 1.1E-08 75.7 6.7 136 423-588 62-208 (367)
414 PRK11160 cysteine/glutathione 97.2 0.00055 1.2E-08 82.3 7.6 44 417-460 355-400 (574)
415 cd03257 ABC_NikE_OppD_transpor 97.2 7.6E-05 1.7E-09 78.5 0.2 44 416-459 19-64 (228)
416 COG3283 TyrR Transcriptional r 97.2 0.00094 2E-08 73.3 8.5 179 429-627 230-443 (511)
417 cd03263 ABC_subfamily_A The AB 97.2 7.4E-05 1.6E-09 78.2 0.0 44 416-459 16-61 (220)
418 PRK11144 modC molybdate transp 97.2 0.00018 3.8E-09 81.2 3.1 40 420-459 16-57 (352)
419 PRK10895 lipopolysaccharide AB 97.2 7.9E-05 1.7E-09 79.3 0.2 48 412-459 13-62 (241)
420 COG0396 sufC Cysteine desulfur 97.2 0.0014 3.1E-08 68.4 9.3 35 416-450 18-54 (251)
421 cd03299 ABC_ModC_like Archeal 97.2 0.00025 5.4E-09 75.3 3.9 42 417-458 14-57 (235)
422 cd01124 KaiC KaiC is a circadi 97.2 0.0014 3E-08 66.4 9.3 32 429-460 2-36 (187)
423 cd01131 PilT Pilus retraction 97.2 0.0004 8.6E-09 72.0 5.3 67 429-495 4-84 (198)
424 KOG0062 ATPase component of AB 97.2 0.00047 1E-08 78.9 6.2 127 408-543 86-231 (582)
425 cd03256 ABC_PhnC_transporter A 97.2 7.7E-05 1.7E-09 79.2 -0.1 44 416-459 15-60 (241)
426 COG3638 ABC-type phosphate/pho 97.2 0.00022 4.8E-09 74.5 3.2 55 406-460 7-64 (258)
427 PRK13657 cyclic beta-1,2-gluca 97.2 0.00039 8.3E-09 83.8 5.8 43 416-458 349-393 (588)
428 TIGR02857 CydD thiol reductant 97.2 0.00053 1.1E-08 81.5 6.8 44 416-459 336-381 (529)
429 cd03296 ABC_CysA_sulfate_impor 97.2 0.0002 4.3E-09 76.2 2.9 49 412-460 12-62 (239)
430 cd03265 ABC_DrrA DrrA is the A 97.2 0.00021 4.5E-09 74.9 3.0 47 414-460 12-60 (220)
431 TIGR03864 PQQ_ABC_ATP ABC tran 97.2 8.4E-05 1.8E-09 78.9 0.0 46 414-459 13-60 (236)
432 PRK11264 putative amino-acid A 97.2 9.4E-05 2E-09 79.1 0.4 48 412-459 13-62 (250)
433 PRK08118 topology modulation p 97.2 0.0004 8.7E-09 70.0 4.9 32 428-459 3-34 (167)
434 cd03262 ABC_HisP_GlnQ_permease 97.2 0.0002 4.3E-09 74.6 2.8 44 416-459 14-59 (213)
435 cd03260 ABC_PstB_phosphate_tra 97.2 6E-05 1.3E-09 79.4 -1.1 44 416-459 14-64 (227)
436 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.00072 1.6E-08 70.0 6.9 20 428-447 30-49 (200)
437 PRK13642 cbiO cobalt transport 97.2 0.0002 4.3E-09 78.0 2.7 42 417-458 22-65 (277)
438 TIGR03410 urea_trans_UrtE urea 97.2 0.0002 4.4E-09 75.5 2.7 45 416-460 14-60 (230)
439 COG4988 CydD ABC-type transpor 97.2 0.00041 9E-09 80.8 5.2 57 405-461 323-382 (559)
440 cd01121 Sms Sms (bacterial rad 97.2 0.0015 3.3E-08 74.1 9.7 72 428-499 84-172 (372)
441 TIGR02323 CP_lyasePhnK phospho 97.2 8.8E-05 1.9E-09 79.5 -0.3 45 416-460 17-63 (253)
442 PRK11288 araG L-arabinose tran 97.2 0.00072 1.6E-08 79.9 7.3 43 417-459 268-312 (501)
443 COG4148 ModC ABC-type molybdat 97.2 0.0011 2.5E-08 70.8 7.9 137 421-581 17-180 (352)
444 TIGR01978 sufC FeS assembly AT 97.1 8.3E-05 1.8E-09 79.1 -0.6 48 412-459 10-61 (243)
445 PRK11248 tauB taurine transpor 97.1 0.00022 4.8E-09 76.7 2.6 44 416-459 15-60 (255)
446 PRK11831 putative ABC transpor 97.1 9.7E-05 2.1E-09 80.1 -0.3 48 412-459 17-66 (269)
447 COG1618 Predicted nucleotide k 97.1 0.0008 1.7E-08 66.5 5.9 24 427-450 6-29 (179)
448 PRK11124 artP arginine transpo 97.1 0.00027 5.9E-09 75.2 3.0 46 415-460 15-62 (242)
449 PRK14722 flhF flagellar biosyn 97.1 0.0012 2.6E-08 74.7 8.2 34 428-461 139-177 (374)
450 TIGR02204 MsbA_rel ABC transpo 97.1 0.00058 1.3E-08 82.0 6.1 43 417-459 355-399 (576)
451 TIGR01846 type_I_sec_HlyB type 97.1 0.00062 1.3E-08 83.7 6.4 56 405-460 458-517 (694)
452 PRK07261 topology modulation p 97.1 0.00061 1.3E-08 68.9 5.2 31 429-459 3-33 (171)
453 TIGR03005 ectoine_ehuA ectoine 97.1 0.00011 2.4E-09 78.8 -0.2 44 416-459 14-59 (252)
454 PRK10908 cell division protein 97.1 0.00012 2.5E-09 77.0 -0.1 44 416-459 16-61 (222)
455 PRK10789 putative multidrug tr 97.1 0.00071 1.5E-08 81.3 6.7 43 417-459 330-374 (569)
456 TIGR03411 urea_trans_UrtD urea 97.1 0.00011 2.4E-09 78.2 -0.2 49 412-460 12-62 (242)
457 PRK10790 putative multidrug tr 97.1 0.0006 1.3E-08 82.2 6.1 43 417-459 356-400 (592)
458 cd03243 ABC_MutS_homologs The 97.1 0.00067 1.5E-08 70.3 5.6 21 428-448 31-51 (202)
459 cd03292 ABC_FtsE_transporter F 97.1 0.00029 6.3E-09 73.4 2.8 44 416-459 15-60 (214)
460 PRK15079 oligopeptide ABC tran 97.1 0.00038 8.3E-09 77.9 3.9 42 417-458 36-79 (331)
461 KOG2170 ATPase of the AAA+ sup 97.1 0.0061 1.3E-07 66.0 12.6 72 426-500 110-193 (344)
462 PRK11701 phnK phosphonate C-P 97.1 0.00011 2.5E-09 78.9 -0.3 44 416-459 20-65 (258)
463 KOG0481 DNA replication licens 97.1 0.0051 1.1E-07 70.3 12.5 38 133-170 132-174 (729)
464 PRK11300 livG leucine/isoleuci 97.1 0.00012 2.6E-09 78.5 -0.2 49 412-460 15-65 (255)
465 PRK13540 cytochrome c biogenes 97.1 0.0003 6.6E-09 72.7 2.8 46 414-459 13-60 (200)
466 TIGR01192 chvA glucan exporter 97.1 0.00073 1.6E-08 81.4 6.5 43 417-459 350-394 (585)
467 PRK13545 tagH teichoic acids e 97.1 0.00058 1.3E-08 80.0 5.3 43 417-459 39-83 (549)
468 cd03264 ABC_drug_resistance_li 97.1 0.00031 6.7E-09 73.1 2.8 44 416-459 14-58 (211)
469 COG1125 OpuBA ABC-type proline 97.1 0.00018 3.9E-09 75.8 1.0 55 405-459 4-60 (309)
470 PRK14250 phosphate ABC transpo 97.1 0.0003 6.5E-09 75.0 2.7 44 416-459 17-62 (241)
471 PRK13539 cytochrome c biogenes 97.1 0.00029 6.4E-09 73.3 2.6 46 414-459 14-61 (207)
472 TIGR02211 LolD_lipo_ex lipopro 97.1 0.0003 6.4E-09 73.7 2.5 43 417-459 20-64 (221)
473 PRK11629 lolD lipoprotein tran 97.1 0.00032 7E-09 74.3 2.8 44 417-460 24-69 (233)
474 PRK10522 multidrug transporter 97.1 0.00099 2.2E-08 79.6 7.2 43 417-459 338-382 (547)
475 TIGR01842 type_I_sec_PrtD type 97.1 0.00077 1.7E-08 80.5 6.3 44 416-459 332-377 (544)
476 TIGR02012 tigrfam_recA protein 97.0 0.0018 3.8E-08 72.0 8.6 110 428-538 57-189 (321)
477 PRK11889 flhF flagellar biosyn 97.0 0.0013 2.8E-08 74.4 7.5 36 426-461 241-279 (436)
478 PRK09493 glnQ glutamine ABC tr 97.0 0.00035 7.5E-09 74.3 2.9 46 415-460 14-61 (240)
479 PRK10619 histidine/lysine/argi 97.0 0.00015 3.3E-09 77.9 0.2 50 411-460 14-65 (257)
480 PRK13547 hmuV hemin importer A 97.0 0.0001 2.3E-09 80.1 -1.1 42 412-453 11-54 (272)
481 TIGR01618 phage_P_loop phage n 97.0 0.0015 3.3E-08 68.7 7.6 23 426-448 12-34 (220)
482 COG1101 PhnK ABC-type uncharac 97.0 0.0018 3.9E-08 67.0 7.8 85 417-502 21-110 (263)
483 PRK11823 DNA repair protein Ra 97.0 0.0021 4.5E-08 74.9 9.3 73 427-499 81-170 (446)
484 TIGR03873 F420-0_ABC_ATP propo 97.0 0.00011 2.3E-09 79.1 -1.2 48 412-459 11-60 (256)
485 PRK10584 putative ABC transpor 97.0 0.00035 7.6E-09 73.6 2.7 43 417-459 25-69 (228)
486 PRK11614 livF leucine/isoleuci 97.0 0.00014 3.1E-09 77.1 -0.3 45 415-459 18-64 (237)
487 COG1135 AbcC ABC-type metal io 97.0 0.00014 2.9E-09 78.8 -0.5 42 416-457 20-63 (339)
488 PRK10575 iron-hydroxamate tran 97.0 0.00015 3.2E-09 78.5 -0.4 49 411-459 20-70 (265)
489 PRK10261 glutathione transport 97.0 0.00045 9.8E-09 83.8 3.8 43 417-459 339-383 (623)
490 cd03295 ABC_OpuCA_Osmoprotecti 97.0 0.00037 7.9E-09 74.3 2.6 44 416-459 15-60 (242)
491 cd03227 ABC_Class2 ABC-type Cl 97.0 0.00082 1.8E-08 67.3 5.0 24 426-449 21-44 (162)
492 PRK13548 hmuV hemin importer A 97.0 0.00036 7.9E-09 75.2 2.6 46 414-459 14-61 (258)
493 TIGR01069 mutS2 MutS2 family p 97.0 0.0064 1.4E-07 75.3 13.6 23 427-449 323-345 (771)
494 TIGR03740 galliderm_ABC gallid 97.0 0.00016 3.5E-09 75.9 -0.2 44 416-459 14-59 (223)
495 PRK08533 flagellar accessory p 97.0 0.0018 3.8E-08 68.8 7.6 33 428-460 26-61 (230)
496 TIGR02788 VirB11 P-type DNA tr 97.0 0.00081 1.8E-08 74.5 5.2 74 423-496 141-229 (308)
497 COG1132 MdlB ABC-type multidru 97.0 0.0009 2E-08 80.3 6.0 54 406-459 332-388 (567)
498 KOG2383 Predicted ATPase [Gene 97.0 0.0043 9.3E-08 69.3 10.6 161 423-610 111-297 (467)
499 COG1137 YhbG ABC-type (unclass 97.0 0.00045 9.8E-09 70.5 2.8 57 404-460 6-64 (243)
500 KOG0477 DNA replication licens 97.0 0.0067 1.4E-07 70.8 12.4 28 429-456 485-512 (854)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-87 Score=731.72 Aligned_cols=430 Identities=40% Similarity=0.586 Sum_probs=407.7
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
.....++.|+++.|+++.+.++++++.++++|..|.++|-+.|+||||+||||||||.|||++||+.++||++.++++|-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 33446788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
++|+|++..+++.+|..++..+||||||||||+++..|.. +.....+.++|+||.+||+|..+.+|+||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~---~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNP---SDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCc---cHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 9999999999999999999999999999999999988743 3444889999999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
||++|+||||||++|.+|.||...|.+||+.|+.++.+..++|+..||+-|.||+|+||+|+||.|++.|+..+...+++
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM 531 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTM 531 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccccccc--cchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCCccccceeccccccccccccC
Q 003000 624 DDLLQAAQIEERGMLDRKER--SSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGML 701 (859)
Q Consensus 624 edl~~Al~~~~~g~~~~~~~--~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g~~lG~~~~~~~e~~~~~~~~ 701 (859)
.|++.|-+++.+| ++++.. +++.++.+||||+|||||+.+..+..|++++||.|| |.++|.+.+.|+. |++.+
T Consensus 532 ~~LE~akDrIlMG-~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPR-G~sLG~t~~LPe~---D~~~~ 606 (752)
T KOG0734|consen 532 KHLEFAKDRILMG-PERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPR-GPSLGHTSQLPEK---DRYSI 606 (752)
T ss_pred HHHhhhhhheeec-ccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccC-CccccceeecCcc---chhhH
Confidence 9999999999999 677665 888899999999999999999999999999999999 9999999999987 78999
Q ss_pred CHHHHHHHHHHhhhhHHHHHHHhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCcCCCCc--------hhhhhhHHHHH
Q 003000 702 SRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKHFGLSN--------FWVADRINEID 772 (859)
Q Consensus 702 tr~~l~~~I~v~LAGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~~g~~~--------~~~~~~~~~id 772 (859)
||.++++++.||||||+|||++||.|.+|+||++|+++||.+|+.||+ ||||+.. |+.. ....++...||
T Consensus 607 Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~v-G~v~~~~~~~~~s~~~~t~~lid 685 (752)
T KOG0734|consen 607 TKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKV-GPVTLSAEDNSSSLSPRTQELID 685 (752)
T ss_pred HHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccc-cceeeeccCCCCCCCchhHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999986 4332 23455667899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHHhc
Q 003000 773 TEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELH 822 (859)
Q Consensus 773 ~ev~~lL~~ay~rA~~IL~~nr~~L~~LA~~LLeketL~~~ei~~Il~~~ 822 (859)
.||.++|+++|+||+.||+.|...+++||++||++|||+++||.+++++.
T Consensus 686 aEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 686 AEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999754
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-77 Score=696.77 Aligned_cols=445 Identities=46% Similarity=0.681 Sum_probs=413.9
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
.....+.|.|+.|+++++.++.+++.++++|..|.++|.++|+|+||+||||||||.||||+|++.++||+.+++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 44566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccC-CcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG-LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~-~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
.++|.+..+++.+|..++..+|||+||||||.++..++ .+.+.++.+...++|+||.+||++....+|+|+++||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999998884 34557788889999999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 622 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It 622 (859)
||++|+||||||+.|+++.|+..+|.+|++.|++..++. +++|+..+|..|+||+|+||.++|++|++.|.+.+...|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999999885 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCccccc-cccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCCccccceeccccccccccccC
Q 003000 623 TDDLLQAAQIEERGMLDRK-ERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGML 701 (859)
Q Consensus 623 ~edl~~Al~~~~~g~~~~~-~~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g~~lG~~~~~~~e~~~~~~~~ 701 (859)
..|+..|++++..|+..+. ..+.++++.+|+||||||+++|++++.+++.+|||.| |.++||+++.|.+ .+++
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP--GqalG~a~~~P~~----~~l~ 616 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP--GQALGYAQYLPTD----DYLL 616 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc--CCccceEEECCcc----cccc
Confidence 9999999999999953322 2388999999999999999999999999999999999 4499999999987 3899
Q ss_pred CHHHHHHHHHHhhhhHHHHHHHhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCc------------CCCCchhhhhhH
Q 003000 702 SRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH------------FGLSNFWVADRI 768 (859)
Q Consensus 702 tr~~l~~~I~v~LAGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~------------~g~~~~~~~~~~ 768 (859)
|+++|+++||++|||||||+++|| +++|||+++|+++||.+|+.||. |||++.. +.....|+..+.
T Consensus 617 sk~ql~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~ 695 (774)
T KOG0731|consen 617 SKEQLFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTA 695 (774)
T ss_pred cHHHHHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHH
Confidence 999999999999999999999999 78999999999999999999999 9999875 111236778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCCCCCCCChhhHh
Q 003000 769 NEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHGSLEPMPPSIVDIR 836 (859)
Q Consensus 769 ~~id~ev~~lL~~ay~rA~~IL~~nr~~L~~LA~~LLeketL~~~ei~~Il~~~~~~~~~p~~~~~~r 836 (859)
+.||.+|++|+..||++|.++|.+|++.|+.||+.||++++|+++|+..++..++...+.+..+.+..
T Consensus 696 ~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~~~~~~~~ 763 (774)
T KOG0731|consen 696 QLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEKNVIVEQK 763 (774)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcccccchhhhhc
Confidence 99999999999999999999999999999999999999999999999999998887766555555443
No 3
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-77 Score=684.76 Aligned_cols=432 Identities=47% Similarity=0.729 Sum_probs=412.2
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 465 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 465 (859)
....+.|.++.|.++.+.++.+++.++.++..|..+|..+|+|++|+||||||||.|||++|++.+.||+++++++|++.
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCC
Q 003000 466 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 545 (859)
Q Consensus 466 ~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ld 545 (859)
|+|.+..+++.+|.++++.+|||+||||||+++..|+...+.|+.++.+++|+||.+||++..+.+|+||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999988878889999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 003000 546 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 625 (859)
Q Consensus 546 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ed 625 (859)
|+|+||||||+.|.++.||...|.+|++.|+++.++..++|+..+|+.|+||+|+||.+++|+|++.|.+.++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcccccc--ccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCCccccceeccccccccccccCCH
Q 003000 626 LLQAAQIEERGMLDRKE--RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSR 703 (859)
Q Consensus 626 l~~Al~~~~~g~~~~~~--~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g~~lG~~~~~~~e~~~~~~~~tr 703 (859)
|.+|++++..| +.++. .++.+++.+||||+|||++++++++.++++++||+|| |+++||+.+.|.+ +++++|+
T Consensus 383 i~ea~drv~~G-~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPr-G~alG~t~~~Pe~---d~~l~sk 457 (596)
T COG0465 383 IEEAIDRVIAG-PERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPR-GRALGYTLFLPEE---DKYLMSK 457 (596)
T ss_pred hHHHHHHHhcC-cCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccC-chhhcchhcCCcc---ccccccH
Confidence 99999999999 45544 3889999999999999999999999999999999999 8999999999987 7899999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCc----CCCCc-----------hhhhhh
Q 003000 704 QSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGLSN-----------FWVADR 767 (859)
Q Consensus 704 ~~l~~~I~v~LAGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~----~g~~~-----------~~~~~~ 767 (859)
.+++++|+++||||||||++||. ++|||+++|+++||.+|+.||+ |||++.. |+... .|++.+
T Consensus 458 ~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~t 536 (596)
T COG0465 458 EELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEET 536 (596)
T ss_pred HHHHHHHHHHhCCcHhhhhhhcc-cccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHH
Confidence 99999999999999999999996 6999999999999999999999 9999754 22211 377889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHHhcC
Q 003000 768 INEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHG 823 (859)
Q Consensus 768 ~~~id~ev~~lL~~ay~rA~~IL~~nr~~L~~LA~~LLeketL~~~ei~~Il~~~~ 823 (859)
...||.+|++++..||++|++||..|++.++.+++.|+++|||++++|.+|+....
T Consensus 537 a~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 537 AQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999997654
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.8e-72 Score=663.80 Aligned_cols=435 Identities=42% Similarity=0.653 Sum_probs=400.7
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 466 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 466 (859)
...+.|+++.|+++.+..+.+++..+.++..|..+|...|+|+||+||||||||+||+++|++++.+++.++++++...+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred hcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCc
Q 003000 467 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 546 (859)
Q Consensus 467 ~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldp 546 (859)
.|.+...++.+|+.++...||||||||||.++..++...++++.....+++.||.++|++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 98888889999999999999999999999998777654455666777899999999999988889999999999999999
Q ss_pred cCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003000 547 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 626 (859)
Q Consensus 547 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl 626 (859)
+++||||||++|.|++|+.++|.+||+.+++...+..++++..+|..|.||+++||.++|++|+..|.+++...|+.+||
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl 416 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEI 416 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCCccccceeccccccccccccCCHHHH
Q 003000 627 LQAAQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSL 706 (859)
Q Consensus 627 ~~Al~~~~~g~~~~~~~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g~~lG~~~~~~~e~~~~~~~~tr~~l 706 (859)
..|++++..|...+...++.+++++|||||||||+++++++.++|++|||+|| |+++||+.+.|.+ +.+.+||.+|
T Consensus 417 ~~Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~pr-g~~~G~~~~~p~~---~~~~~t~~~l 492 (638)
T CHL00176 417 DTAIDRVIAGLEGTPLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPR-GQAKGLTWFTPEE---DQSLVSRSQI 492 (638)
T ss_pred HHHHHHHHhhhccCccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeec-CCCCCceEecCCc---ccccccHHHH
Confidence 99999998885444444778899999999999999999999999999999999 8999999999876 6788999999
Q ss_pred HHHHHHhhhhHHHHHHHhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCc---CCC--------------CchhhhhhH
Q 003000 707 LDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH---FGL--------------SNFWVADRI 768 (859)
Q Consensus 707 ~~~I~v~LAGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~---~g~--------------~~~~~~~~~ 768 (859)
+++|+++|||||||+++||++++|+|+++||++||.+|+.||+ |||+..+ +.. ...|++++.
T Consensus 493 ~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 572 (638)
T CHL00176 493 LARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIA 572 (638)
T ss_pred HHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecCCCCcccccccccccccCcCHHHH
Confidence 9999999999999999999878999999999999999999999 9998533 111 012567788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCC
Q 003000 769 NEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHGSL 825 (859)
Q Consensus 769 ~~id~ev~~lL~~ay~rA~~IL~~nr~~L~~LA~~LLeketL~~~ei~~Il~~~~~~ 825 (859)
..+|.+|+++|++||++|++||++||+.|++||++|+++|+|+++||++|++.+...
T Consensus 573 ~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~~ 629 (638)
T CHL00176 573 DKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTIL 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCCC
Confidence 899999999999999999999999999999999999999999999999999987643
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.3e-69 Score=645.89 Aligned_cols=433 Identities=39% Similarity=0.620 Sum_probs=396.6
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 467 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 467 (859)
....|.++.|+...+..+.+++..+..+..+..++..+|+|++|+||||||||+++++++++++.+++.++++++...|.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45568888999999999999999888888888889999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCcc
Q 003000 468 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 547 (859)
Q Consensus 468 g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldpa 547 (859)
+.+...++.+|..++...|||+||||+|.++..++...+++......+++.||.+||++..+.+++||+|||+|+.|||+
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999988776544455566778999999999999988999999999999999999
Q ss_pred CCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003000 548 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 627 (859)
Q Consensus 548 LlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~ 627 (859)
++||||||+.|+|+.|+.++|.+||+.++.+.++..++|+..+|..|.||||+||.++|++|+..|.+.++..|+..|+.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~ 386 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 386 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccc-cccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCCccccceeccccccccccccCCHHHH
Q 003000 628 QAAQIEERGMLDRK-ERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSL 706 (859)
Q Consensus 628 ~Al~~~~~g~~~~~-~~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g~~lG~~~~~~~e~~~~~~~~tr~~l 706 (859)
.|++++..|...+. ..+.++++.+||||+||||+++++++.+++++|||+|| |.++||+.+.|.+ +....||.+|
T Consensus 387 ~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~pr-g~~~g~~~~~~~~---~~~~~~~~~l 462 (644)
T PRK10733 387 KAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR-GRALGVTFFLPEG---DAISASRQKL 462 (644)
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEecc-CCCcceeEECCCc---ccccccHHHH
Confidence 99999988843322 23678899999999999999999999999999999999 8899999998876 5667899999
Q ss_pred HHHHHHhhhhHHHHHHHhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCc----CCCC-------------chhhhhhH
Q 003000 707 LDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGLS-------------NFWVADRI 768 (859)
Q Consensus 707 ~~~I~v~LAGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~----~g~~-------------~~~~~~~~ 768 (859)
+++|+++|||||||+++||.+++|+|+++||++||.+|+.||+ ||||+.. |... ..+++++.
T Consensus 463 ~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~ 542 (644)
T PRK10733 463 ESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETA 542 (644)
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHH
Confidence 9999999999999999999888999999999999999999999 9999853 2111 13566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHHhcCC
Q 003000 769 NEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHGS 824 (859)
Q Consensus 769 ~~id~ev~~lL~~ay~rA~~IL~~nr~~L~~LA~~LLeketL~~~ei~~Il~~~~~ 824 (859)
..+|.+|+++|++||++|++||++||+.|++||++|+++|||+++||++|+..+..
T Consensus 543 ~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~~ 598 (644)
T PRK10733 543 RIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRDV 598 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999987643
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.1e-67 Score=612.92 Aligned_cols=431 Identities=47% Similarity=0.720 Sum_probs=392.2
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
....+.++|+++.|++..+..+.+++..+.++..|...|...|+|+||+||||||||+|+++||++++.+++.++++++.
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..|.|.....++.+|+.++...|+||||||||.+...+....+++......+++.||.+||++....+++||+|||+++.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 99999998999999999999999999999999998776543334456667889999999999988889999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
+||+++||||||+.|+|++|+.++|.+|++.++...+...++++..+|..|.|||++||.++|++|+..|.+++...|+.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~ 285 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITM 285 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999999998888788999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHcCccccc-cccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCCccccceeccccccccccccCC
Q 003000 624 DDLLQAAQIEERGMLDRK-ERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLS 702 (859)
Q Consensus 624 edl~~Al~~~~~g~~~~~-~~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g~~lG~~~~~~~e~~~~~~~~t 702 (859)
+||..|++++..|...+. ..++..++++|+|||||||++++++...++++|||.|+ |..+||+.+.+.+ +.+..|
T Consensus 286 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~---~~~~~t 361 (495)
T TIGR01241 286 NDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPR-GQALGYTQFLPEE---DKYLYT 361 (495)
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeec-CCccceEEecCcc---ccccCC
Confidence 999999999988732222 23678899999999999999999988889999999999 8899999988765 467889
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCc----CCC-------------Cchhh
Q 003000 703 RQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGL-------------SNFWV 764 (859)
Q Consensus 703 r~~l~~~I~v~LAGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~----~g~-------------~~~~~ 764 (859)
+.+++++|+|+|||||||+++||+ +|+|+++|+++||.+|+.||. |||++.. +.. ...++
T Consensus 362 ~~~l~~~i~v~LaGraAE~~~~G~--~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s 439 (495)
T TIGR01241 362 KSQLLAQIAVLLGGRAAEEIIFGE--VTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYS 439 (495)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcC--CCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccC
Confidence 999999999999999999999996 999999999999999999999 9999843 111 12455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHH
Q 003000 765 ADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVE 820 (859)
Q Consensus 765 ~~~~~~id~ev~~lL~~ay~rA~~IL~~nr~~L~~LA~~LLeketL~~~ei~~Il~ 820 (859)
+.+...+|.+|+++|++||++|++||++||++|++||++|+++++|+++||++|+.
T Consensus 440 ~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 440 EETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 66778899999999999999999999999999999999999999999999999973
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-48 Score=415.40 Aligned_cols=252 Identities=46% Similarity=0.760 Sum_probs=244.8
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
...++++|.+++|+++.+.++++++.. +.+|.+|..+|+.+|+|||||||||||||.||||+|++.+..|+.+.+|+++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 456889999999999999999999986 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
.+|+|.+..-++.+|+.|+.++||||||||||+++..|...+.||..+...++-+||.+||+|.+.+||-||++||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
|||||+||||||+.|.||+|+.+.|.+||+.|.++..+.+++|+..||..|+|+||+||.++|.+|...|.+..+..||+
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~ 382 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTM 382 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003000 624 DDLLQAAQIEERG 636 (859)
Q Consensus 624 edl~~Al~~~~~g 636 (859)
+||..|++++...
T Consensus 383 ~DF~~Av~KV~~~ 395 (406)
T COG1222 383 EDFLKAVEKVVKK 395 (406)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=2.2e-48 Score=477.37 Aligned_cols=294 Identities=19% Similarity=0.220 Sum_probs=250.8
Q ss_pred hhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh------------------------------
Q 003000 417 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY------------------------------ 466 (859)
Q Consensus 417 ~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~------------------------------ 466 (859)
...++|+.+|+||||+||||||||+|||+||+++++|++.|++++++..+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 34678999999999999999999999999999999999999999988643
Q ss_pred -----------hccc--chhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---CCC
Q 003000 467 -----------VGVG--ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---GRG 530 (859)
Q Consensus 467 -----------~g~~--~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~---~~~ 530 (859)
++.+ ...++.+|+.|+..+||||||||||.++... .....++.|+.+|++.. ...
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccCCCC
Confidence 1111 2236889999999999999999999997541 12236899999999763 356
Q ss_pred CeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHH--HccCCCCC-cccHHHHHhhCCCCCHHHHHHHHH
Q 003000 531 NVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH--ARKKPMAD-DVDYLAVASMTDGMVGAELANIVE 607 (859)
Q Consensus 531 ~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~--l~~~~~~~-d~dl~~lA~~t~G~sgadL~~Lv~ 607 (859)
+|+||||||+|+.|||||+||||||+.|+|+.|+..+|.+++... .++..+.. .+|+..+|..|.|||||||++||+
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999998854 34444443 368999999999999999999999
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEec--C---CCCc
Q 003000 608 VAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIA--P---RAGR 682 (859)
Q Consensus 608 ~A~~~A~~~~~~~It~edl~~Al~~~~~g~~~~~~~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~--p---r~g~ 682 (859)
+|+..|+++++..|+.+++..|++++.+|. .....+.... .+|+||+|||||+.++++.++|++|||. + +.|.
T Consensus 1852 EAaliAirq~ks~Id~~~I~~Al~Rq~~g~-~~~~~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~ 1929 (2281)
T CHL00206 1852 EALSISITQKKSIIDTNTIRSALHRQTWDL-RSQVRSVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGD 1929 (2281)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHhhh-hhcccCcchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcc
Confidence 999999999999999999999999999994 3333333333 4799999999999999999999999995 3 2245
Q ss_pred cccceeccccccccccccCCHHHHHHHHHHhhhhHHHHHHHhCC
Q 003000 683 ELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGE 726 (859)
Q Consensus 683 ~lG~~~~~~~e~~~~~~~~tr~~l~~~I~v~LAGRAAEel~fG~ 726 (859)
++||+++.+.+ ..+++.+++.+|++||||||||+++|+.
T Consensus 1930 ~yl~~wyle~~-----~~mkk~tiL~~Il~cLAGraAedlwf~~ 1968 (2281)
T CHL00206 1930 SYLYKWYFELG-----TSMKKLTILLYLLSCSAGSVAQDLWSLP 1968 (2281)
T ss_pred cceeEeecCCc-----ccCCHHHHHHHHHHHhhhhhhhhhccCc
Confidence 77999988754 6899999999999999999999999976
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-42 Score=391.65 Aligned_cols=249 Identities=43% Similarity=0.739 Sum_probs=234.9
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
.+.+++.|++++|+++.+.++++.+.+ +..+..|.++|+.+|+|||||||||||||++||+||.+++.+|+.+.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 356789999999999999999998887 7889999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
++|+|.++..++.+|+.++..+|||+||||||++...|+ ++++.-.+.++++||.+|||+....+|+||++||+|+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~---g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG---GSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC---CCccchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 999999999999999999999999999999999999886 23346677899999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC--CCcc
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--RTEI 621 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~--~~~I 621 (859)
||+|++||||||+.||||+||.+.|.+||+.++++.++.+++|+..||..|+||||+||.++|++|+..|.++. .+.|
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875 5679
Q ss_pred CHHHHHHHHHHHHcC
Q 003000 622 TTDDLLQAAQIEERG 636 (859)
Q Consensus 622 t~edl~~Al~~~~~g 636 (859)
+.+||.+|+..+...
T Consensus 663 ~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPS 677 (693)
T ss_pred cHHHHHHHHHhhccc
Confidence 999999999876544
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-41 Score=375.04 Aligned_cols=248 Identities=40% Similarity=0.670 Sum_probs=228.1
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
.-++++|++++++.++..++..++.+ ++.+..|+.+|+..|.||||+||||||||.|||++|++.+.+|+.|.+.++++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 34788999999999999999887776 78999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
+|+|..+..++.+|+.|+..+||||||||+|++.+.|+... ..-...++|+||.+||++..+.+|.||++||+||.+
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999886543 344455999999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHc--cCCCCCcccHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhC---
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR--KKPMADDVDYLAVASMTD--GMVGAELANIVEVAAINMMRDG--- 617 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~--~~~~~~d~dl~~lA~~t~--G~sgadL~~Lv~~A~~~A~~~~--- 617 (859)
|||++||||||+.+++++|+.++|.+||+.+++ +.++.+|+|++.||..+. ||||+||..||++|...|.++.
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 778899999999999887 9999999999999999888751
Q ss_pred -------------CCccCHHHHHHHHHHHHcC
Q 003000 618 -------------RTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 618 -------------~~~It~edl~~Al~~~~~g 636 (859)
...++..||.+|+.++...
T Consensus 741 ~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 741 IDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred ccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 0136778999999887554
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=322.54 Aligned_cols=253 Identities=38% Similarity=0.656 Sum_probs=240.8
Q ss_pred cccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeecccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 462 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~ 462 (859)
.++-++-.++.++|+++.+.++.+++.. +++|++|..+|+.-|+|++|+||||+|||.|++++|....+.|++++++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 3455777889999999999999999986 789999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC
Q 003000 463 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 542 (859)
Q Consensus 463 ~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~ 542 (859)
+.+|+|.+...++.+|-.++.++|+|+|.||||+++..|...+++|..+...++-.||.++|+|....|+-||++||+.|
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 99999999999999999999999999999999999999887777777888888999999999999999999999999999
Q ss_pred CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003000 543 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 622 (859)
Q Consensus 543 ~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It 622 (859)
.|||+|+||||+|+.|.||+|+.+.|.+|++.|.++.++...+++..+|....|.||+++..+|.+|...|.++.+-.+|
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvt 377 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVT 377 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 003000 623 TDDLLQAAQIEERG 636 (859)
Q Consensus 623 ~edl~~Al~~~~~g 636 (859)
.+||.-|+..+...
T Consensus 378 qedfemav~kvm~k 391 (404)
T KOG0728|consen 378 QEDFEMAVAKVMQK 391 (404)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-37 Score=314.31 Aligned_cols=251 Identities=37% Similarity=0.629 Sum_probs=238.0
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
...+++++.+++|++-.+.++++++.. +....+|+.+|+.+|+|+|+|||||||||.|+|++|+.....|+++.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 356889999999999999999999886 6678899999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
.+|+|.+...++.+|..++.++|+|+||||+|++...+.....+...+...++-.||..||+|....||-||++||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 99999999999999999999999999999999999888776667777788899999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
|||+|+||||+|+.|.||.||..++.-+|.....+.++.+++|+..+..+.+..|++||..+|++|...|.+.++-.|..
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~ 386 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQ 386 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 003000 624 DDLLQAAQIEER 635 (859)
Q Consensus 624 edl~~Al~~~~~ 635 (859)
.||..+...+..
T Consensus 387 kd~e~ay~~~vk 398 (408)
T KOG0727|consen 387 KDFEKAYKTVVK 398 (408)
T ss_pred HHHHHHHHhhcC
Confidence 999999887643
No 13
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=4.5e-37 Score=320.00 Aligned_cols=193 Identities=34% Similarity=0.452 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHHHcCcccc-ccccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCCccccceecccccccccccc
Q 003000 622 TTDDLLQAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGM 700 (859)
Q Consensus 622 t~edl~~Al~~~~~g~~~~-~~~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g~~lG~~~~~~~e~~~~~~~ 700 (859)
|++||.+|++++..|...+ ...++++++++|+|||||||+++++++..+|.+|||+|+ |.++||+.+.|.+ +...
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~---~~~~ 76 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPR-GSALGFTQFTPDE---DRYI 76 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTT-CCCCHCCEECHHT---T-SS
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecC-CCcceeEEeccch---hccc
Confidence 6789999999999995443 334899999999999999999999998899999999999 7799999998876 5567
Q ss_pred CCHHHHHHHHHHhhhhHHHHHHHhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCc----CCCCc--------------
Q 003000 701 LSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGLSN-------------- 761 (859)
Q Consensus 701 ~tr~~l~~~I~v~LAGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~----~g~~~-------------- 761 (859)
.||.+|+++|+|+|||||||+++||.+++|+|+++||.+||.+|+.||. |||++.. ++...
T Consensus 77 ~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~ 156 (213)
T PF01434_consen 77 RTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRR 156 (213)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEE
T ss_pred ccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccC
Confidence 9999999999999999999999999888999999999999999999999 9999843 11100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 003000 762 FWVADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHL 818 (859)
Q Consensus 762 ~~~~~~~~~id~ev~~lL~~ay~rA~~IL~~nr~~L~~LA~~LLeketL~~~ei~~I 818 (859)
.++..+...++.+|+++|+.||++|++||++||++|++||++|+++++|+++||.+|
T Consensus 157 ~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 157 PMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 234566788999999999999999999999999999999999999999999999986
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=347.85 Aligned_cols=227 Identities=42% Similarity=0.682 Sum_probs=214.3
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 466 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 466 (859)
+.++.|.+++|+++...++.+++..+.++..|..+|+.+|+||||+||||||||.||++||+++++||+.|+..+++..+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCC----CCeEEEeccCCCC
Q 003000 467 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR----GNVITIASTNRPD 542 (859)
Q Consensus 467 ~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~----~~vlVIatTN~~~ 542 (859)
.|..+.+++.+|+.|...+|||+||||||++.+.|.. .+-+..+.++.+||.+||++... ..|+||++||+||
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 9999999999999999999999999999999988743 33455678999999999997654 5699999999999
Q ss_pred CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 543 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 543 ~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
.|||+|+|+||||+.|.+..|+..+|.+||+..+++..+..++|+..||..|+||.|+||..||.+|+..|+++
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-37 Score=314.08 Aligned_cols=252 Identities=38% Similarity=0.634 Sum_probs=239.3
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
+..+++.+.+++|..+.+..+++++.. +-+++.|-++|+.+|+|+|+|||||||||.+|+++|+..+..|+++-+|+++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 356888999999999999999999986 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
.+|+|.+...++.+|+.++....||+|+||||++++.+...+..|..+...++-.|+.++|+|..++|+-|+++||+|+.
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 99999999999999999999999999999999999888766666677777788899999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
|||+|+||||+|+.+.|.+||.+.|..||+.|.+......++-+.-||+.++.-+|++|+.+|.+|...|++..+...|.
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~ate 408 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATE 408 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003000 624 DDLLQAAQIEERG 636 (859)
Q Consensus 624 edl~~Al~~~~~g 636 (859)
.||..|+.++..|
T Consensus 409 kdfl~av~kvvkg 421 (435)
T KOG0729|consen 409 KDFLDAVNKVVKG 421 (435)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998877
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-37 Score=318.11 Aligned_cols=252 Identities=38% Similarity=0.649 Sum_probs=235.1
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
++.+.-+|.+++|++..+.++.+.+.. +.+|+.|...|+.+|.||+|||+||||||.|||++|+.....|.++.+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 455677899999999999999998875 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..|+|.+...++.+|+.+..++|+|+||||||+++..|....+.|..+...++-.||.++|+|..++.|-||++||..+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 99999999999999999999999999999999999887654444444556677799999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
|||+|+||||+|+.|.||.||...+..||..|.....+..++++..+...-+.+||+||..+|.+|.+.|.+..+-.+++
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~ 416 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTM 416 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003000 624 DDLLQAAQIEERG 636 (859)
Q Consensus 624 edl~~Al~~~~~g 636 (859)
+||..|.+.+...
T Consensus 417 ~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 417 EDFKKAKEKVLYK 429 (440)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-36 Score=308.07 Aligned_cols=249 Identities=40% Similarity=0.659 Sum_probs=235.7
Q ss_pred cCccccccCccCchHHHHHHHHHHH-hcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVK-FFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~-~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+.-.+++++|+++.+.++-+++. .+.++..|.++|+.+|+|+|+|||||||||.+|++.|...+..|..+.+..++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 3456678999999999998877665 477889999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
+|+|.+...++..|.-++..+|+|+||||+|+++..|.....+|..+...++-.||.++|+|.+...|-||++||+.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999988877788888888999999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~e 624 (859)
||+|+|.||+|+.|.||.|+.+.|.+|++.|.++..+.+|+++.+||+.|++|.|++...+|-+|...|.+++.+.|+.+
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~he 403 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHE 403 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003000 625 DLLQAAQIEE 634 (859)
Q Consensus 625 dl~~Al~~~~ 634 (859)
||.+++..+.
T Consensus 404 DfmegI~eVq 413 (424)
T KOG0652|consen 404 DFMEGILEVQ 413 (424)
T ss_pred HHHHHHHHHH
Confidence 9999987664
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=330.85 Aligned_cols=252 Identities=37% Similarity=0.599 Sum_probs=231.6
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
...+.+.|.+++|++..+.++.+.+.. +.++..|..+|+..|+|++|+||||||||++++++|++++.+++.+.++.+.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 346789999999999999999998874 7788999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..|+|.+...++.+|..++...|+||||||+|.++..+.....+........+..|+..++++....+++||++||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999998889999999999999999999999998766433333344556788899999999888889999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
+||+++||||||+.|+|++|+.++|..||+.++.+.++..++++..++..|+||||+||.++|++|...|.++++..|+.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~ 376 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILP 376 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003000 624 DDLLQAAQIEERG 636 (859)
Q Consensus 624 edl~~Al~~~~~g 636 (859)
+||..|+..+..+
T Consensus 377 ~df~~A~~~v~~~ 389 (398)
T PTZ00454 377 KDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988655
No 19
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=337.90 Aligned_cols=248 Identities=37% Similarity=0.684 Sum_probs=222.1
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
+-+++.|+|++|+++++.++.+-+.. +.++.+| ..|++...|||||||||||||.+|||+|-++...|.+|.+.++.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 35789999999999999998887765 6666665 458888899999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccC--CCCeEEEeccCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNRPD 542 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~--~~~vlVIatTN~~~ 542 (859)
+|+|+.+.+++.+|+.|+..+|||||+||+|++++.|+-.++|||- .+.++.+||.+||++.+ ...|+||++||+||
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGV-MDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGV-MDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcccc-HHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999987777764 45678999999999884 56799999999999
Q ss_pred CCCccCCCCCcccccccCCCCC-HHHHHHHHHHHHccCCCCCcccHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHhC---
Q 003000 543 ILDPALVRPGRFDRKIFIPKPG-LIGRMEILKVHARKKPMADDVDYLAVASMTD-GMVGAELANIVEVAAINMMRDG--- 617 (859)
Q Consensus 543 ~LdpaLlrpgRfd~~I~~~~Pd-~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~-G~sgadL~~Lv~~A~~~A~~~~--- 617 (859)
.|||+|+||||||+.+|+.+++ .+.+..|++...++..++.++|+..+|..++ .|||+|+..||-.|.+.|+++.
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 5568899999999999999999999999876 6999999999999999998761
Q ss_pred --------------CCccCHHHHHHHHHHHHc
Q 003000 618 --------------RTEITTDDLLQAAQIEER 635 (859)
Q Consensus 618 --------------~~~It~edl~~Al~~~~~ 635 (859)
.-.|+++||..+.++...
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 124899999999887543
No 20
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-35 Score=311.83 Aligned_cols=247 Identities=35% Similarity=0.554 Sum_probs=219.3
Q ss_pred cccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeecccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 462 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~ 462 (859)
....+.+.|+++.|+.+++.-+++++.. +..|..|+. ..++-+|||++||||||||.|||++|.+++..|+.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 3456789999999999999999988775 555665543 34556899999999999999999999999999999999999
Q ss_pred chhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCC-CC---eEEEecc
Q 003000 463 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR-GN---VITIAST 538 (859)
Q Consensus 463 ~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~-~~---vlVIatT 538 (859)
.++|-|..++.++-+|+.|+..+|++|||||||.++..|+. .+.++-.+.+-+.||.+||+.... .+ |+|+++|
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~--s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG--SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC--ccchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 99999999999999999999999999999999999988864 366778888999999999997653 33 7888999
Q ss_pred CCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003000 539 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 618 (859)
Q Consensus 539 N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~ 618 (859)
|.|+.||.+|+| ||...|+||+|+.++|..+++..++.....+++++..|+..++||||+||.++|++|...+.++--
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999888521
Q ss_pred -----------------CccCHHHHHHHHHHHHc
Q 003000 619 -----------------TEITTDDLLQAAQIEER 635 (859)
Q Consensus 619 -----------------~~It~edl~~Al~~~~~ 635 (859)
..|+.+||+.|+.++..
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 23778888888876644
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=294.72 Aligned_cols=240 Identities=35% Similarity=0.574 Sum_probs=219.7
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 466 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 466 (859)
..++.|+++.|.+..+...+-+..++.+|..|.. -.|++|||+||||||||++||+||+++..|++.+...++...|
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 3678899999999999999999999999987755 4588899999999999999999999999999999999999999
Q ss_pred hcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCc
Q 003000 467 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 546 (859)
Q Consensus 467 ~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldp 546 (859)
+|.+...++.+|+.++..+|||+||||+|+++-+|....-- .....++|.||.+||++..+.+|+.|++||.|+.|||
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelR--GDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELR--GDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhc--ccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999998765432211 1234589999999999999999999999999999999
Q ss_pred cCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHH-HHHHHHHHHHHHhCCCccCHHH
Q 003000 547 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELA-NIVEVAAINMMRDGRTEITTDD 625 (859)
Q Consensus 547 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~-~Lv~~A~~~A~~~~~~~It~ed 625 (859)
++++ ||...|.|.+|+.++|..|++.+++..++.-+.++..++..|.||||+||. .++..|...|+..++..|+.+|
T Consensus 270 aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ed 347 (368)
T COG1223 270 AIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERED 347 (368)
T ss_pred HHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHH
Confidence 9988 999999999999999999999999999999999999999999999999996 6778889999999999999999
Q ss_pred HHHHHHHH
Q 003000 626 LLQAAQIE 633 (859)
Q Consensus 626 l~~Al~~~ 633 (859)
|..|+...
T Consensus 348 ie~al~k~ 355 (368)
T COG1223 348 IEKALKKE 355 (368)
T ss_pred HHHHHHhh
Confidence 99999863
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=7.1e-34 Score=322.60 Aligned_cols=252 Identities=39% Similarity=0.661 Sum_probs=230.4
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
...+...|.++.|++..+..+.+++.. +.++..|..+|+..|.|++|+||||||||++|+++|++++.+++.+..+++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345678899999999999999998874 7788899999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..|.|.+...++.+|..+....|+|+||||||.++..+.....++......++..||..++++....++.||++||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 99999988889999999999999999999999998776543334444556677889999999887889999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
+||+++||||||+.|+|++|+..+|.+||+.++.+..+..++++..++..+.||||+||.++|++|+..|.++++..|+.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~ 414 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQ 414 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003000 624 DDLLQAAQIEERG 636 (859)
Q Consensus 624 edl~~Al~~~~~g 636 (859)
+||..|+.++...
T Consensus 415 ~D~~~A~~~v~~~ 427 (438)
T PTZ00361 415 ADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988543
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.7e-34 Score=321.25 Aligned_cols=251 Identities=46% Similarity=0.737 Sum_probs=231.1
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+.+.|++++|++..+..+.+++.. +.++..|..+|+..|+|++|+||||||||++|+++|.+++.+++.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45678899999999999999988865 67888999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
.|.|.....++.+|+.++...|+||||||+|.++..+.....++.......+..|+..++++....+++||+|||.++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999888889999999999999999999999987765544455556667788899999988888899999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~e 624 (859)
|++++||||||+.|+||+|+.++|.+||+.++.+..+..++++..+|..|.||+|+||..+|++|+..|.+++...|+.+
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~ 363 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME 363 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 003000 625 DLLQAAQIEERG 636 (859)
Q Consensus 625 dl~~Al~~~~~g 636 (859)
||.+|+..+..+
T Consensus 364 d~~~A~~~~~~~ 375 (389)
T PRK03992 364 DFLKAIEKVMGK 375 (389)
T ss_pred HHHHHHHHHhcc
Confidence 999999998765
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-33 Score=316.43 Aligned_cols=226 Identities=36% Similarity=0.657 Sum_probs=211.5
Q ss_pred ccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 466 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 466 (859)
..+.|.+++|+.+++..+++++.+ -+.+.+|....++.+.|||||||||||||.||.++|..++..|+.+.+.++..+|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 458999999999999999999987 4578899999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCc
Q 003000 467 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 546 (859)
Q Consensus 467 ~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldp 546 (859)
+|..+.+++.+|..|+...|||+|+||+|.+++.|+-.. ..-.+.++|+||.+|||...-.+|.|+++|.+|+.|||
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs---TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS---TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC---CCchHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 999999999999999999999999999999999986422 22445689999999999999999999999999999999
Q ss_pred cCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 547 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 547 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
||+||||+|+.++.|.|+..+|.+|++........+.++|+..+|..|+||||+||..|+-.|.+.|..+
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999899999999999999999999999999999999887664
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-32 Score=317.60 Aligned_cols=245 Identities=44% Similarity=0.750 Sum_probs=224.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+.+.|.+++|+...+..+.+++.. +..+..|...++..+.|+||+||||||||+||+++|.+++.+|+.+.++++..
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45678899999999999999998887 56777788889999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
+|+|....+++.+|..++...||||||||+|++.+.++...++ ....++++||.+|+++....+|+||++||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~---~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG---SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch---HHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 9999999999999999999999999999999999887543222 2256999999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCC--CCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-CCcc
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP--MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTEI 621 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~--~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~-~~~I 621 (859)
||+++||||||+.|+||+||..+|.+||+.++.+.. +..++|+..++..|.||+|+||..+|++|...+.++. ...+
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999998554 4578999999999999999999999999999999988 7789
Q ss_pred CHHHHHHHHHHH
Q 003000 622 TTDDLLQAAQIE 633 (859)
Q Consensus 622 t~edl~~Al~~~ 633 (859)
+.+||..|+..+
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999874
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.6e-32 Score=312.93 Aligned_cols=241 Identities=27% Similarity=0.411 Sum_probs=209.6
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 467 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 467 (859)
....|++++|++..+..+......+. ......|+..|+|+||+||||||||++|++||++++.+++.++++.+...|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS--KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh--HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 45679999999999988887655443 2346789999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCcc
Q 003000 468 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 547 (859)
Q Consensus 468 g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldpa 547 (859)
|.....++.+|+.++...||||||||||.+...+.... .+.....+++.|+..|+. ...+|+||+|||+++.|||+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~a 376 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLE 376 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHH
Confidence 99999999999999999999999999999876433222 223445678888888874 45679999999999999999
Q ss_pred CCCCCcccccccCCCCCHHHHHHHHHHHHccCCC--CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 003000 548 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 625 (859)
Q Consensus 548 LlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~--~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ed 625 (859)
++|+||||+.|+|+.|+.++|.+||+.++.+... ..+.++..+|..|.||||+||.++|.+|...|...++ .++.+|
T Consensus 377 llR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~d 455 (489)
T CHL00195 377 ILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDD 455 (489)
T ss_pred HhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHH
Confidence 9999999999999999999999999999987643 2478899999999999999999999999999987775 599999
Q ss_pred HHHHHHHHHc
Q 003000 626 LLQAAQIEER 635 (859)
Q Consensus 626 l~~Al~~~~~ 635 (859)
|..|+..+..
T Consensus 456 l~~a~~~~~P 465 (489)
T CHL00195 456 ILLALKQFIP 465 (489)
T ss_pred HHHHHHhcCC
Confidence 9999987653
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.9e-32 Score=329.75 Aligned_cols=248 Identities=41% Similarity=0.748 Sum_probs=224.8
Q ss_pred CccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 465 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 465 (859)
.+.+.|.++.|++.++..+.+.+.. +..+..+..+|+..|+|+||+||||||||++|+++|++++.+|+.++++++...
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 3567899999999999999998875 778889999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCC
Q 003000 466 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 545 (859)
Q Consensus 466 ~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ld 545 (859)
|+|+....++.+|+.++...|||+||||+|.+++.++.. .++...+.++++||.+||++....+++||+|||+|+.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~--~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR--FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC--CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 999999999999999999999999999999998876432 222345668999999999988888999999999999999
Q ss_pred ccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC--------
Q 003000 546 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-------- 617 (859)
Q Consensus 546 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~-------- 617 (859)
|+++||||||+.|+||+|+.++|.+||+.++++.++..++|+..+|..|+||||+||.++|++|+..|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999999899999999999999999999999999999887742
Q ss_pred ----------CCccCHHHHHHHHHHHHcC
Q 003000 618 ----------RTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 618 ----------~~~It~edl~~Al~~~~~g 636 (859)
...|+.+||..|+..+...
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcCCC
Confidence 1269999999999876443
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=9.2e-32 Score=302.45 Aligned_cols=248 Identities=48% Similarity=0.774 Sum_probs=225.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+.+.|+++.|+++.+..+.+.+.. +.++..+..+|+..|.|++|+||||||||++++++|+.++.+++.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45778899999999999999988765 67788899999999999999999999999999999999999999999988888
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
.|+|.....++.+|+.++...|+||||||+|.++..+.....+++......+..++..++++...+++.||+|||.++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 89988888889999999999999999999999987665444455556667788999999988777899999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~e 624 (859)
|+++++|||||+.|+|+.|+.++|.+||+.++....+..++++..++..|.||+|+||.++|++|+..|.++++..|+.+
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~ 354 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMD 354 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003000 625 DLLQAAQIE 633 (859)
Q Consensus 625 dl~~Al~~~ 633 (859)
||..|+..+
T Consensus 355 d~~~a~~~~ 363 (364)
T TIGR01242 355 DFIKAVEKV 363 (364)
T ss_pred HHHHHHHHh
Confidence 999998865
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-31 Score=279.25 Aligned_cols=227 Identities=34% Similarity=0.591 Sum_probs=200.0
Q ss_pred cccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeecccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 462 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~ 462 (859)
....+++.|+++.|++..+..+.+++.. ++.|.+|.. +-.+-+||||+||||||||+|||++|.+.+..|++|+.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 4466899999999999999999887764 556666542 23444789999999999999999999999999999999999
Q ss_pred chhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-CCCCeEEEeccCCC
Q 003000 463 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRP 541 (859)
Q Consensus 463 ~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-~~~~vlVIatTN~~ 541 (859)
+++|+|..+..+..+|+.++.+.|+||||||||.+++.++. ...+-.|.+-..||.+|.++. ++.+|+|+++||.|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999877643 345666778899999999864 45789999999999
Q ss_pred CCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 542 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 542 ~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
+.||.+++| ||++.||||+|+...|..+|+.|+.+.+.. .+.|+..|+..|+||||+||.-+|+.|.....+.
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999887543 5678999999999999999999999998877664
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-32 Score=283.73 Aligned_cols=250 Identities=38% Similarity=0.660 Sum_probs=233.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
...+++|+.+.|+....-++.+.+.. +.++.++.++|+.+|.|++||||||+|||.+++++|..++..++.+..+++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 44568999999999999888887775 78999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
.|.|.....++..|..|+...||++|+||||++++.+.....+.+.....++..|+.+|+++...+.|-+|+|||+|+.|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 99999999999999999999999999999999998886556688888889999999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~e 624 (859)
||+|+||||+|+.|++|.|+...|..|++.|.........+|...+...++||.|+|+.+.|.+|...|.+..+..+-.+
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~E 364 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHE 364 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 003000 625 DLLQAAQIEER 635 (859)
Q Consensus 625 dl~~Al~~~~~ 635 (859)
|+..++..+..
T Consensus 365 d~~k~vrk~~~ 375 (388)
T KOG0651|consen 365 DFMKLVRKQAD 375 (388)
T ss_pred HHHHHHHHHHH
Confidence 99999876643
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.2e-31 Score=282.38 Aligned_cols=228 Identities=35% Similarity=0.619 Sum_probs=208.8
Q ss_pred cccCccccccCccCchHHHHHHHHHHHh-cccchhhhccC-CccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRG-VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~g-l~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
...+..++|.+++|++.++..+.+.+.. +..+..|...+ +.++.||||+||||||||.+|+++|.+.+..|+.++++.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 4456789999999999999999887765 67778886544 456789999999999999999999999999999999999
Q ss_pred cchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCC--eEEEeccC
Q 003000 462 FVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN--VITIASTN 539 (859)
Q Consensus 462 ~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~--vlVIatTN 539 (859)
+.++++|...+.+..+|..+....|+|+||||+|.+++.| ..+.++-...+-++|+...|++..+.+ |+|+++||
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R---~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR---RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc---ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 9999999999999999999999999999999999999887 246677778888999999999888766 99999999
Q ss_pred CCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 540 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 540 ~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
+|..+|.+++| |+.+.++|+.|+..+|.+|++..++...+.+++|+..+|..|.||||.||.++|+.|+...++.
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999887764
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.5e-29 Score=290.86 Aligned_cols=266 Identities=35% Similarity=0.591 Sum_probs=213.5
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc----------
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN---------- 453 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~---------- 453 (859)
...+.+.|++++|++..+..+.+.+.. +.++..|...|+..|+|+||+||||||||++++++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 455788999999999999999988765 678889999999999999999999999999999999988543
Q ss_pred EEEeeccccchhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCC
Q 003000 454 FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR 529 (859)
Q Consensus 454 ~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~ 529 (859)
|+.+..+++...|+|.....++.+|+.++.. .|+|+||||+|.++..++... .++..+.+++.||..||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 5566777888889999988899999988764 699999999999987764322 2233456789999999999888
Q ss_pred CCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC-CCCC---------cccHHHHH--------
Q 003000 530 GNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-PMAD---------DVDYLAVA-------- 591 (859)
Q Consensus 530 ~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~-~~~~---------d~dl~~lA-------- 591 (859)
++++||+|||+++.|||+++||||||.+|+|++|+.++|.+||+.++... ++.. ..++..++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999998642 3311 11122221
Q ss_pred ---------------------hhCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHcCccccccc-cc
Q 003000 592 ---------------------SMTDGMVGAELANIVEVAAINMMRD----GRTEITTDDLLQAAQIEERGMLDRKER-SS 645 (859)
Q Consensus 592 ---------------------~~t~G~sgadL~~Lv~~A~~~A~~~----~~~~It~edl~~Al~~~~~g~~~~~~~-~~ 645 (859)
..++.+||++|.++|..|...|+.+ +...|+.+|+..|+........+-+.. .+
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~ 491 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNP 491 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCH
Confidence 2256789999999999999888765 345799999999998766542222222 66
Q ss_pred hhhhHHH
Q 003000 646 ETWRQVA 652 (859)
Q Consensus 646 e~~~~vA 652 (859)
++|.++.
T Consensus 492 ~~w~~~~ 498 (512)
T TIGR03689 492 DDWARIS 498 (512)
T ss_pred HHHhhhh
Confidence 7776553
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=6.8e-27 Score=254.24 Aligned_cols=230 Identities=19% Similarity=0.209 Sum_probs=178.9
Q ss_pred ccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHh-----cCCcEEEhhhh
Q 003000 420 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKD-----NAPSVVFIDEL 494 (859)
Q Consensus 420 ~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~-----~~p~Il~iDEI 494 (859)
..|+++|.+++|+||||||||.++++||++++.+++.++++++...|+|..+..++.+|..|+. ..|||||||||
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 3788999999999999999999999999999999999999999999999999999999999875 46999999999
Q ss_pred HhhhhccCCcCCCCchhHHHHHHHHHHhhccc------------cCCCCeEEEeccCCCCCCCccCCCCCcccccccCCC
Q 003000 495 DAVGRERGLIKGSGGQERDATLNQLLVCLDGF------------EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 562 (859)
Q Consensus 495 d~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~------------~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~ 562 (859)
|++++.++. ..+....+.+...||..+|+. ....+|+||+|||+|+.|||+|+||||||+.| ..
T Consensus 222 DA~~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 222 DAGAGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hhcCCCCCC--CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 999887642 222223445558899888752 23567999999999999999999999999975 47
Q ss_pred CCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCC----CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCcc
Q 003000 563 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDG----MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGML 638 (859)
Q Consensus 563 Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G----~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g~~ 638 (859)
|+.++|.+|++.++++..+. ..|+..|+..++| |.|+--..+..++...-+.+ +..+-+-.. .... .
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~----~g~~~~~~~---l~~~-~ 368 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE----VGVENLGKK---LVNS-K 368 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH----hhHHHHHHH---HhcC-C
Confidence 99999999999999988765 5788899988887 56766667777666544332 222222222 2222 1
Q ss_pred cc-ccccchhhhHHHHHHHHHHHHH
Q 003000 639 DR-KERSSETWRQVAINEAAMAVVA 662 (859)
Q Consensus 639 ~~-~~~~~e~~~~vA~hEAGHAvva 662 (859)
.. +.........-+.-|+||.++.
T Consensus 369 ~~~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 369 KGPPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 22 2223444556678899999875
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.2e-27 Score=267.21 Aligned_cols=236 Identities=39% Similarity=0.621 Sum_probs=213.8
Q ss_pred cccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 467 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 467 (859)
.+. .++.|+......++.++.. +.++..+..+|..+|+|+|++||||+|||.+++++|++.+..++.+++.+++..|.
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~ 259 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFP 259 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcc
Confidence 344 5677888887777777765 67888899999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHhcC-CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCc
Q 003000 468 GVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 546 (859)
Q Consensus 468 g~~~~~l~~lfe~a~~~~-p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldp 546 (859)
|++...++..|+.+.... |+++||||+|.+.+.+.... + ..+.+..+|+..||+.....+++||++||+|+.|||
T Consensus 260 gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~---~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 260 GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD---D-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDP 335 (693)
T ss_pred cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc---h-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccCh
Confidence 999999999999999999 99999999999998764322 1 355688999999999888899999999999999999
Q ss_pred cCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003000 547 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 626 (859)
Q Consensus 547 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl 626 (859)
+++| ||||+.+.+..|+..+|.+|++.+++..+..+++++..+|..|.||+|+||..+|.+|...+.++ +++++
T Consensus 336 alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~ 409 (693)
T KOG0730|consen 336 ALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIF 409 (693)
T ss_pred hhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHH
Confidence 9999 99999999999999999999999999999998899999999999999999999999999999887 88888
Q ss_pred HHHHHHHHc
Q 003000 627 LQAAQIEER 635 (859)
Q Consensus 627 ~~Al~~~~~ 635 (859)
..|...+..
T Consensus 410 ~~A~~~i~p 418 (693)
T KOG0730|consen 410 QEALMGIRP 418 (693)
T ss_pred HHHHhcCCc
Confidence 888776544
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-27 Score=263.61 Aligned_cols=273 Identities=31% Similarity=0.492 Sum_probs=217.1
Q ss_pred CccccccC--ccCchHHHHHHH--HHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc-cEEEeeccc
Q 003000 387 GVDVKFSD--VAGLGKIRLELE--EIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQ 461 (859)
Q Consensus 387 ~~~~~f~~--~~gl~~~v~~l~--~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-~~~~is~s~ 461 (859)
.+++.|.+ ++|+++..-.+- .....+-.|....++|+.--+|+|||||||||||.+||.|..-++. +--.+++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 35667766 447765543332 2222344577889999999999999999999999999999987743 233478999
Q ss_pred cchhhhcccchhhhhHHHHHHh--------cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeE
Q 003000 462 FVEIYVGVGASRVRSLYQEAKD--------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVI 533 (859)
Q Consensus 462 ~~~~~~g~~~~~l~~lfe~a~~--------~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vl 533 (859)
..++|+|+++.+++.+|..|.. ..-.|+++||||+++..|+...++. .-.+.++|+||.-||+...-.|++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T-GVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST-GVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC-CccHHHHHHHHHhcccHHhhhcEE
Confidence 9999999999999999988753 1235899999999999987655433 344669999999999999999999
Q ss_pred EEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC----CCCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 003000 534 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PMADDVDYLAVASMTDGMVGAELANIVEVA 609 (859)
Q Consensus 534 VIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~----~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A 609 (859)
||+-||+.|.||.||+|||||...+++.+||...|.+|++.|.... .+..|+|+.+||.+|..|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988654 567899999999999999999999999999
Q ss_pred HHHHHHhC---------------CCccCHHHHHHHHHHHHcCccccccccchh-------------hhHHHHHHHHHHHH
Q 003000 610 AINMMRDG---------------RTEITTDDLLQAAQIEERGMLDRKERSSET-------------WRQVAINEAAMAVV 661 (859)
Q Consensus 610 ~~~A~~~~---------------~~~It~edl~~Al~~~~~g~~~~~~~~~e~-------------~~~vA~hEAGHAvv 661 (859)
...|..+. .-.|+.+||..|++.+.... ..++++ -....+.+-|.-+|
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF----G~see~l~~~~~~Gmi~~g~~v~~il~~G~llv 527 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAF----GISEEDLERFVMNGMINWGPPVTRILDDGKLLV 527 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCccc----CCCHHHHHHHHhCCceeecccHHHHHhhHHHHH
Confidence 88887652 12599999999998664421 112222 23455677788877
Q ss_pred HHh
Q 003000 662 AVN 664 (859)
Q Consensus 662 a~l 664 (859)
+-+
T Consensus 528 ~qv 530 (744)
T KOG0741|consen 528 QQV 530 (744)
T ss_pred HHh
Confidence 654
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=3.6e-26 Score=278.43 Aligned_cols=246 Identities=45% Similarity=0.769 Sum_probs=218.7
Q ss_pred ccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 466 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 466 (859)
+.+.|+++.|+...+..+.+++.. +.++..+..+|+..|.|++|+||||||||+|+++||++++.+++.++++++...|
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 568899999999999999988875 6778899999999999999999999999999999999999999999999999889
Q ss_pred hcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCc
Q 003000 467 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 546 (859)
Q Consensus 467 ~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldp 546 (859)
.|.....++.+|+.+....|+||||||+|.+...+.. ..++..+.+++.|+..|+++.....++||++||.++.+|+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~---~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREE---VTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccC---CcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 9988888999999999999999999999999876532 2233445678899999999888888999999999999999
Q ss_pred cCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC---------
Q 003000 547 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--------- 617 (859)
Q Consensus 547 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~--------- 617 (859)
+++++|||++.|.|+.|+.++|.+|++.+.+...+..+.++..++..|.||+++|+..+++.|+..+.++.
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999998888888999999999999999999999999988776541
Q ss_pred ----------CCccCHHHHHHHHHHHHcC
Q 003000 618 ----------RTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 618 ----------~~~It~edl~~Al~~~~~g 636 (859)
...++.+|+..|+..+...
T Consensus 410 ~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 410 AEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred cccccchhcccccccHHHHHHHHhhcccc
Confidence 1247889999998876543
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-26 Score=274.05 Aligned_cols=229 Identities=35% Similarity=0.613 Sum_probs=201.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc-----cccEEEeec
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISA 459 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~ 459 (859)
....+.|++++|++.++..+++++.. +..++.|.++++.+|+|+|++||||||||..|+++|..+ ...|+.-++
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34678899999999999999998886 778999999999999999999999999999999999987 345666677
Q ss_pred cccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccC
Q 003000 460 SQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 539 (859)
Q Consensus 460 s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN 539 (859)
.+..++|+|.....++.+|+.++...|+|+|+||||-+++.+... ..+....++..||..||++..++.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 778888999999999999999999999999999999998876321 12233457889999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 003000 540 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG 617 (859)
Q Consensus 540 ~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~ 617 (859)
+++.+||+++||||||+.++||+|+.+.|..|+..|.++-.-. ...-+..+|..|.||.|+||..+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 9999999999999999999999999999999999998765422 23446889999999999999999999999998864
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.6e-25 Score=244.98 Aligned_cols=244 Identities=34% Similarity=0.534 Sum_probs=205.1
Q ss_pred cCccccccCccCchHHHHHHHHHHHhc-ccchhhhccCCcc-CceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRI-PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~-~~~~~~~~~gl~~-~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
....+.|+++.|+..++..+.+++... ..+..|. |++. ++|+||.||||+|||.|+++||.+.+..|+.++.+.+.
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~--glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL--GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhh--ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 456788999999999999998887763 3455554 3443 36799999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccC--CCCeEEEeccCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNRP 541 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~--~~~vlVIatTN~~ 541 (859)
..|+|.+...++.+|.-|+...|+|+||||+|.++..| .+...+..+....++|..+++... .++|+||+|||.|
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R---s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR---SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP 300 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc---CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCc
Confidence 99999999999999999999999999999999999887 345556666677788877777554 4579999999999
Q ss_pred CCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCC-CCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC--
Q 003000 542 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR-- 618 (859)
Q Consensus 542 ~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~-~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~-- 618 (859)
+.+|.+++| ||.++++||+|+.+.|..+|+..+.+.+ ...+.|+..+++.|+||++.||.++|.+|+.--.+...
T Consensus 301 ~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 301 WELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred hHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc
Confidence 999999999 9999999999999999999999998773 33567899999999999999999999999865444322
Q ss_pred -----------CccCHHHHHHHHHHHHcC
Q 003000 619 -----------TEITTDDLLQAAQIEERG 636 (859)
Q Consensus 619 -----------~~It~edl~~Al~~~~~g 636 (859)
..++..|+..++..+...
T Consensus 379 ~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 379 TDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred hhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 246677777777766543
No 39
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-24 Score=257.34 Aligned_cols=261 Identities=25% Similarity=0.296 Sum_probs=214.9
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccceeeee
Q 003000 220 RQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIF 299 (859)
Q Consensus 220 ~~~~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~~~rl~~l~~el~~~~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~ 299 (859)
.+.+.+++ .|.+++.+++++.+++.|++++.++.+ ++|+..++.+.++
T Consensus 391 a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~-----------------------~~~k~~~~~~~~~-------- 438 (786)
T COG0542 391 ARVRLEID-KPEELDELERELAQLEIEKEALEREQD-----------------------EKEKKLIDEIIKL-------- 438 (786)
T ss_pred HHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhh-----------------------HHHHHHHHHHHHH--------
Confidence 34556777 889999999999999999999988843 3444444444444
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhchhhhHHHHHHHhcCC
Q 003000 300 YRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKG 379 (859)
Q Consensus 300 YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~i~~~vs~~tgip 379 (859)
+. ..++.++.+++. .++.+.+++++++|||||
T Consensus 439 -~~--------------------------~~~~~~~~~~~~---------------------~v~~~~Ia~vv~~~TgIP 470 (786)
T COG0542 439 -KE--------------------------GRIPELEKELEA---------------------EVDEDDIAEVVARWTGIP 470 (786)
T ss_pred -hh--------------------------hhhhhHHHHHhh---------------------ccCHHHHHHHHHHHHCCC
Confidence 00 334444444331 178889999999999999
Q ss_pred CCcccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCc----eEEEECCCCCCchhHHHhhhhccc---c
Q 003000 380 LPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG----GILLCGPPGVGKTLLAKAVAGEAG---V 452 (859)
Q Consensus 380 ~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~----gvLL~GPpGtGKTtLakaLA~el~---~ 452 (859)
+.++.+.+.....+....+.+.|.++++++..+.+.....+.|+..|+ +++|.||+|+|||.|||+||..+. .
T Consensus 471 v~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~ 550 (786)
T COG0542 471 VAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQ 550 (786)
T ss_pred hhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCc
Confidence 999999888888888888899999999999999999999999998774 399999999999999999999885 8
Q ss_pred cEEEeeccccchh------------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHH
Q 003000 453 NFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 520 (859)
Q Consensus 453 ~~~~is~s~~~~~------------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL 520 (859)
.+++++||+|++. |+|+..+ ..+.+.+++.++|||+||||++.+++ +++.||
T Consensus 551 aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAHpd--------------V~nilL 614 (786)
T COG0542 551 ALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAHPD--------------VFNLLL 614 (786)
T ss_pred cceeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcCHH--------------HHHHHH
Confidence 8999999999876 7887776 45999999999999999999999998 999999
Q ss_pred Hhhccc---------cCCCCeEEEeccCCCC----------------------------CCCccCCCCCcccccccCCCC
Q 003000 521 VCLDGF---------EGRGNVITIASTNRPD----------------------------ILDPALVRPGRFDRKIFIPKP 563 (859)
Q Consensus 521 ~~ld~~---------~~~~~vlVIatTN~~~----------------------------~LdpaLlrpgRfd~~I~~~~P 563 (859)
+.||.- .+..|++||+|||... .+.|+|++ |+|.+|.|.+.
T Consensus 615 QVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L 692 (786)
T COG0542 615 QVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPL 692 (786)
T ss_pred HHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCC
Confidence 999862 2356899999998631 14688888 99999999999
Q ss_pred CHHHHHHHHHHHHcc
Q 003000 564 GLIGRMEILKVHARK 578 (859)
Q Consensus 564 d~~eR~~Il~~~l~~ 578 (859)
+.+...+|+...+..
T Consensus 693 ~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 693 SKEVLERIVDLQLNR 707 (786)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887754
No 40
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.91 E-value=4.2e-23 Score=253.72 Aligned_cols=316 Identities=20% Similarity=0.289 Sum_probs=230.4
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccee
Q 003000 222 RKEELEKMREESEMMEKAMDMQKKEEERRRKKEI-----RLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFF 296 (859)
Q Consensus 222 ~~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~~~-----rl~~l~~el~~~~~~~~~l~~~w~~ek~~~~~i~~l~~~~~ 296 (859)
.+...++.|+.++.+++.+..|+.|.+.+..+.+ |+++++++++.+++++..+..+|..+++.+..+.++
T Consensus 401 ~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~----- 475 (857)
T PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTI----- 475 (857)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----
Confidence 4455677777788888888888888777755533 889999999999999999999999999988888877
Q ss_pred eeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhchhhhHHHHHHHh
Q 003000 297 VIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAY 376 (859)
Q Consensus 297 l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~i~~~vs~~t 376 (859)
+..++.+....+++++..+...+.+.++..++.+++++....... ..........++...++.++++||
T Consensus 476 ----~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~i~~vv~~~t 544 (857)
T PRK10865 476 ----KAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLE-------GKTMRLLRNKVTDAEIAEVLARWT 544 (857)
T ss_pred ----HHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhh-------ccccccccCccCHHHHHHHHHHHH
Confidence 777788887777777777777777788888888887766433111 112223445688899999999999
Q ss_pred cCCCCcccccCccccc-------cCccCchHHHHHHHHHHHhcccchhhhccCCccC----ceEEEECCCCCCchhHHHh
Q 003000 377 GKGLPQYLERGVDVKF-------SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP----GGILLCGPPGVGKTLLAKA 445 (859)
Q Consensus 377 gip~~~~~~~~~~~~f-------~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~----~gvLL~GPpGtGKTtLaka 445 (859)
|||+.++...+..... ..+.|....+..+...+. ....|+..| ..++|+||||||||++|++
T Consensus 545 gip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~-------~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~a 617 (857)
T PRK10865 545 GIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIR-------RSRAGLSDPNRPIGSFLFLGPTGVGKTELCKA 617 (857)
T ss_pred CCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHH-------HHHhcccCCCCCCceEEEECCCCCCHHHHHHH
Confidence 9999988776543322 234455555444444333 333444333 2489999999999999999
Q ss_pred hhhcc---cccEEEeeccccchh------------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCch
Q 003000 446 VAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQ 510 (859)
Q Consensus 446 LA~el---~~~~~~is~s~~~~~------------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge 510 (859)
|+..+ +.+++.++++++... |+|.... ..+.+..+..++++++|||++.+.+.
T Consensus 618 La~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka~~~---------- 685 (857)
T PRK10865 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKAHPD---------- 685 (857)
T ss_pred HHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhCCHH----------
Confidence 99876 457889999887543 1222211 23455566667799999999988765
Q ss_pred hHHHHHHHHHHhhccc---------cCCCCeEEEeccCCC-------------------------CCCCccCCCCCcccc
Q 003000 511 ERDATLNQLLVCLDGF---------EGRGNVITIASTNRP-------------------------DILDPALVRPGRFDR 556 (859)
Q Consensus 511 ~~r~~l~~LL~~ld~~---------~~~~~vlVIatTN~~-------------------------~~LdpaLlrpgRfd~ 556 (859)
+++.|++.++.. .+..+.+||+|||.. ..+.|+|++ |+|.
T Consensus 686 ----v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~ 759 (857)
T PRK10865 686 ----VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDE 759 (857)
T ss_pred ----HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCe
Confidence 778888887642 124567899999973 125678888 9999
Q ss_pred cccCCCCCHHHHHHHHHHHHcc
Q 003000 557 KIFIPKPGLIGRMEILKVHARK 578 (859)
Q Consensus 557 ~I~~~~Pd~~eR~~Il~~~l~~ 578 (859)
++.|.+++.+....|++.++..
T Consensus 760 iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 760 VVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eEecCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999877754
No 41
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.89 E-value=4.8e-22 Score=245.19 Aligned_cols=358 Identities=21% Similarity=0.253 Sum_probs=244.6
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccee
Q 003000 222 RKEELEKMREESEMMEKAMDMQKKEEERRRKKEI-----RLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFF 296 (859)
Q Consensus 222 ~~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~~~-----rl~~l~~el~~~~~~~~~l~~~w~~ek~~~~~i~~l~~~~~ 296 (859)
.+.+..+.|++++.+++++.+++.|.+++.++.+ |++++++++.+++.++..+...|..++..+..+..+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 470 (852)
T TIGR03346 396 IRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQI----- 470 (852)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4455678899999999999999999888866532 889999999999999999999999999988887777
Q ss_pred eeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhchhhhHHHHHHHh
Q 003000 297 VIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAY 376 (859)
Q Consensus 297 l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~i~~~vs~~t 376 (859)
...+.......++.++..+..++.+..+..++.+++.+...+.... ...........++...++.++++||
T Consensus 471 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~v~~~~i~~v~~~~t 541 (852)
T TIGR03346 471 ----KEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLG-----EETKPRLLREEVTAEEIAEVVSRWT 541 (852)
T ss_pred ----HHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhh-----hccccccccCCcCHHHHHHHHHHhc
Confidence 6666555555554555555566666666666666666554331100 0001223445688899999999999
Q ss_pred cCCCCcccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCcc---Cc-eEEEECCCCCCchhHHHhhhhcc--
Q 003000 377 GKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---PG-GILLCGPPGVGKTLLAKAVAGEA-- 450 (859)
Q Consensus 377 gip~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~---~~-gvLL~GPpGtGKTtLakaLA~el-- 450 (859)
|+|+......+..........+.+.+.++..++..+.........|+.. |. .++|+||+|||||++|++||..+
T Consensus 542 gip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 542 GIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred CCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999887765544332222223333444444444443333333444443 33 49999999999999999999876
Q ss_pred -cccEEEeeccccchh------------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 451 -GVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 451 -~~~~~~is~s~~~~~------------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
+.++++++++++... |+|.... +.+.+.++..+.+|++||||+++.+. +++
T Consensus 622 ~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v~~~p~~vlllDeieka~~~--------------v~~ 685 (852)
T TIGR03346 622 DEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEKAHPD--------------VFN 685 (852)
T ss_pred CCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHHHcCCCcEEEEeccccCCHH--------------HHH
Confidence 568899999887543 2222222 34666777788899999999998766 788
Q ss_pred HHHHhhccc---------cCCCCeEEEeccCCCC-------------------------CCCccCCCCCcccccccCCCC
Q 003000 518 QLLVCLDGF---------EGRGNVITIASTNRPD-------------------------ILDPALVRPGRFDRKIFIPKP 563 (859)
Q Consensus 518 ~LL~~ld~~---------~~~~~vlVIatTN~~~-------------------------~LdpaLlrpgRfd~~I~~~~P 563 (859)
.|++.|+.. .+..|++||+|||... .+.|+|+. |+|.+|.|.++
T Consensus 686 ~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL 763 (852)
T TIGR03346 686 VLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPL 763 (852)
T ss_pred HHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCc
Confidence 888888642 1246789999999732 14578887 99999999999
Q ss_pred CHHHHHHHHHHHHccC-------CCC---CcccHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 003000 564 GLIGRMEILKVHARKK-------PMA---DDVDYLAVASM--TDGMVGAELANIVEVAAI 611 (859)
Q Consensus 564 d~~eR~~Il~~~l~~~-------~~~---~d~dl~~lA~~--t~G~sgadL~~Lv~~A~~ 611 (859)
+.+...+|+...+... ++. ++..+..|+.. ...+..+.|.++++....
T Consensus 764 ~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~ 823 (852)
T TIGR03346 764 GREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHH
Confidence 9999999998766421 111 11123344443 223556667666665543
No 42
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.88 E-value=8.8e-22 Score=241.43 Aligned_cols=340 Identities=18% Similarity=0.215 Sum_probs=230.9
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccce
Q 003000 223 KEELEKMREESEMMEKAMDMQKKEEERRRKKE-------IRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVF 295 (859)
Q Consensus 223 ~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~~-------~rl~~l~~el~~~~~~~~~l~~~w~~ek~~~~~i~~l~~~~ 295 (859)
+.+.++.|.+++.+++++.+++.+...+.++. .+...++++++.+++++..+...|+.|+.....+..+
T Consensus 411 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 486 (852)
T TIGR03345 411 ALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILAL---- 486 (852)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34567889999999999999999988876542 1777888999999999999999999998765543332
Q ss_pred eeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhchhhhHHHHHHH
Q 003000 296 FVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRA 375 (859)
Q Consensus 296 ~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~i~~~vs~~ 375 (859)
.. +.. .............+..++.+++.+..... ........++...+++++++|
T Consensus 487 -----~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~i~~vv~~~ 541 (852)
T TIGR03345 487 -----RA-------ELE--ADADAPADDDAALRAQLAELEAALASAQG-----------EEPLVFPEVDAQAVAEVVADW 541 (852)
T ss_pred -----HH-------Hhh--hcccchhhhhHHHHHHHHHHHHHHHHHhh-----------ccccccceecHHHHHHHHHHH
Confidence 00 000 00000012222344455555554443221 122344568889999999999
Q ss_pred hcCCCCcccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCcc---Cce-EEEECCCCCCchhHHHhhhhcc-
Q 003000 376 YGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---PGG-ILLCGPPGVGKTLLAKAVAGEA- 450 (859)
Q Consensus 376 tgip~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~---~~g-vLL~GPpGtGKTtLakaLA~el- 450 (859)
||||+.+...++..........+.+.+.+++.++..+.......+.|+.. |.| ++|+||+|||||.||++||..+
T Consensus 542 tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 542 TGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred HCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999988776655444444445555566666666555544444455543 344 8999999999999999999988
Q ss_pred --cccEEEeeccccchh------------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHH
Q 003000 451 --GVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATL 516 (859)
Q Consensus 451 --~~~~~~is~s~~~~~------------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l 516 (859)
...++.++++++... |+|.... +.+.+.++..+++||+||||+++++. ++
T Consensus 622 ~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~~--------------v~ 685 (852)
T TIGR03345 622 GGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHPD--------------VL 685 (852)
T ss_pred CCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCHH--------------HH
Confidence 457889999887543 4444433 23677778889999999999998765 78
Q ss_pred HHHHHhhcccc---------CCCCeEEEeccCCCC-----------------------------CCCccCCCCCcccccc
Q 003000 517 NQLLVCLDGFE---------GRGNVITIASTNRPD-----------------------------ILDPALVRPGRFDRKI 558 (859)
Q Consensus 517 ~~LL~~ld~~~---------~~~~vlVIatTN~~~-----------------------------~LdpaLlrpgRfd~~I 558 (859)
+.|++.++... +..+++||+|||... .+.|+|++ |++ +|
T Consensus 686 ~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI 762 (852)
T TIGR03345 686 ELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VI 762 (852)
T ss_pred HHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EE
Confidence 88888887532 236799999998521 15678888 997 89
Q ss_pred cCCCCCHHHHHHHHHHHHccC--------CCC---CcccHHHHHhhCCC--CCHHHHHHHHHHHH
Q 003000 559 FIPKPGLIGRMEILKVHARKK--------PMA---DDVDYLAVASMTDG--MVGAELANIVEVAA 610 (859)
Q Consensus 559 ~~~~Pd~~eR~~Il~~~l~~~--------~~~---~d~dl~~lA~~t~G--~sgadL~~Lv~~A~ 610 (859)
.|.+++.++...|+...+... ++. ++.-+..|+....+ +-.+.|.++++.-.
T Consensus 763 ~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 763 PYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 999999999999998776442 221 11223455555432 45677777766543
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.9e-19 Score=194.53 Aligned_cols=198 Identities=25% Similarity=0.403 Sum_probs=150.3
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCc-EEEhhhhHhhhhccCCcC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPS-VVFIDELDAVGRERGLIK 505 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~-Il~iDEId~l~~~r~~~~ 505 (859)
++|+||||||||||.+++-||...|.++-.+++++..-. -.+....+..+|+.+....-+ ++||||.|.++..|....
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty 463 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY 463 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh
Confidence 569999999999999999999999999998888875432 224456778999999876644 689999999998876543
Q ss_pred CCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC---
Q 003000 506 GSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA--- 582 (859)
Q Consensus 506 ~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~--- 582 (859)
. .+..+..+|.||---- .....++++.+||.|..+|.++-. |||.+|+||+|..++|..|+..|+.+....
T Consensus 464 m--SEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 464 M--SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred h--cHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 3 3556778999884322 334568888999999999999987 999999999999999999999988653110
Q ss_pred ------------------------CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 583 ------------------------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 583 ------------------------~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
-+..+.+.|..|.||||++|..|+-.....+.-.....++...|.+.++
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 0112567789999999999999986544333333344566655655543
No 44
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.80 E-value=6.9e-19 Score=216.75 Aligned_cols=266 Identities=18% Similarity=0.215 Sum_probs=190.2
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccceeeeec
Q 003000 223 KEELEKMREESEMMEKAMDMQKKEEERRRKKEI--RLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFY 300 (859)
Q Consensus 223 ~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~~~--rl~~l~~el~~~~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Y 300 (859)
+....+.|.+++.+++++.+++.|++++.++.+ +..+++.+..++++++..+...|..++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 464 (821)
T CHL00095 402 RLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEE----------------- 464 (821)
T ss_pred HhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------------
Confidence 444577899999999999999999888766543 4444444444444555444444443321
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhchhhhHHHHHHHhcCCC
Q 003000 301 RTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGL 380 (859)
Q Consensus 301 kGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~i~~~vs~~tgip~ 380 (859)
.......++...+++++++|||+|+
T Consensus 465 -------------------------------------------------------~~~~~~~v~~~~i~~~~~~~tgip~ 489 (821)
T CHL00095 465 -------------------------------------------------------KRLEVPVVTEEDIAEIVSAWTGIPV 489 (821)
T ss_pred -------------------------------------------------------ccccCCccCHHHHHHHHHHHHCCCc
Confidence 0011234778899999999999999
Q ss_pred CcccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccC---ce-EEEECCCCCCchhHHHhhhhcc---ccc
Q 003000 381 PQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP---GG-ILLCGPPGVGKTLLAKAVAGEA---GVN 453 (859)
Q Consensus 381 ~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~---~g-vLL~GPpGtGKTtLakaLA~el---~~~ 453 (859)
......+..........+.+.+.++++++..+.......+.|+..| .+ ++|+||+|||||+||++||..+ +.+
T Consensus 490 ~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~ 569 (821)
T CHL00095 490 NKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDA 569 (821)
T ss_pred hhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccc
Confidence 9887776655444444556666666666666655555555665443 33 8999999999999999999977 467
Q ss_pred EEEeeccccchh------------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHH
Q 003000 454 FFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 521 (859)
Q Consensus 454 ~~~is~s~~~~~------------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~ 521 (859)
+++++++++... |+|.... +.+.+.++..+.+|++|||+|++++. +++.|++
T Consensus 570 ~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~~~~~~~p~~VvllDeieka~~~--------------v~~~Llq 633 (821)
T CHL00095 570 MIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPYTVVLFDEIEKAHPD--------------IFNLLLQ 633 (821)
T ss_pred eEEEEchhccccccHHHhcCCCCcccCcCcc--chHHHHHHhCCCeEEEECChhhCCHH--------------HHHHHHH
Confidence 899999887542 3333222 34777888888899999999999776 8888998
Q ss_pred hhcccc---------CCCCeEEEeccCCCCC-------------------------------------CCccCCCCCccc
Q 003000 522 CLDGFE---------GRGNVITIASTNRPDI-------------------------------------LDPALVRPGRFD 555 (859)
Q Consensus 522 ~ld~~~---------~~~~vlVIatTN~~~~-------------------------------------LdpaLlrpgRfd 555 (859)
.|+... +..+++||+|||.... +.|+|++ |+|
T Consensus 634 ~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid 711 (821)
T CHL00095 634 ILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLD 711 (821)
T ss_pred HhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCC
Confidence 888521 2468999999985321 3467777 999
Q ss_pred ccccCCCCCHHHHHHHHHHHHcc
Q 003000 556 RKIFIPKPGLIGRMEILKVHARK 578 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~~~l~~ 578 (859)
.+|.|.+++.++...|+...+.+
T Consensus 712 ~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 712 EIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999877754
No 45
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.3e-18 Score=192.79 Aligned_cols=217 Identities=24% Similarity=0.344 Sum_probs=158.7
Q ss_pred HHHhcCCCCcccccCccccccCccCchHHHHH-HHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccc
Q 003000 373 RRAYGKGLPQYLERGVDVKFSDVAGLGKIRLE-LEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 373 s~~tgip~~~~~~~~~~~~f~~~~gl~~~v~~-l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
..|..++.++. -.|+.++--.+.+.+ ++++..+.....-|++.|....+|.|||||||||||+++-|+|+.++
T Consensus 187 ~~W~~v~f~Hp------stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 187 GEWRSVGFPHP------STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred CcceecCCCCC------CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence 45655554433 345554433333333 46677777888899999999999999999999999999999999999
Q ss_pred ccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCC--CCc--hhHHHHHHHHHHhhcccc
Q 003000 452 VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG--SGG--QERDATLNQLLVCLDGFE 527 (859)
Q Consensus 452 ~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~--sgg--e~~r~~l~~LL~~ld~~~ 527 (859)
..++-++.++... . ..++.+.-.. .+-+||+|++||.....+.-... .+. .....++..||..+|++.
T Consensus 261 ydIydLeLt~v~~-----n-~dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw 332 (457)
T KOG0743|consen 261 YDIYDLELTEVKL-----D-SDLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW 332 (457)
T ss_pred CceEEeeeccccC-----c-HHHHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccc
Confidence 9999888776332 1 2255555443 34589999999987542221111 111 235579999999999998
Q ss_pred CCC--CeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCC--CCHHHHH
Q 003000 528 GRG--NVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDG--MVGAELA 603 (859)
Q Consensus 528 ~~~--~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G--~sgadL~ 603 (859)
+.. --|||+|||+++.|||||+||||+|.+|+++.-+..+...++..++.-.. +..-+.++.....| .|+|++.
T Consensus 333 Sscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 333 SSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred ccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHH
Confidence 865 57889999999999999999999999999999999999999999986532 12234444444443 6999985
Q ss_pred HH
Q 003000 604 NI 605 (859)
Q Consensus 604 ~L 605 (859)
..
T Consensus 411 e~ 412 (457)
T KOG0743|consen 411 EE 412 (457)
T ss_pred HH
Confidence 43
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=1.3e-18 Score=165.87 Aligned_cols=130 Identities=45% Similarity=0.718 Sum_probs=114.6
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcC-CcEEEhhhhHhhhhccCCcCCC
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGS 507 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~-p~Il~iDEId~l~~~r~~~~~s 507 (859)
++|+||||||||++++.+|..++.+++.++++.+...+.+.....+..+|+.+.... |+|++|||+|.+.... ..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999988888888889999999998887 9999999999998765 234
Q ss_pred CchhHHHHHHHHHHhhccccCC-CCeEEEeccCCCCCCCccCCCCCcccccccCCC
Q 003000 508 GGQERDATLNQLLVCLDGFEGR-GNVITIASTNRPDILDPALVRPGRFDRKIFIPK 562 (859)
Q Consensus 508 gge~~r~~l~~LL~~ld~~~~~-~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~ 562 (859)
........++.|+..++..... .+++||++||.++.+++.+++ +||+..|++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5566667889999999987665 569999999999999999998 89999999874
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=1.6e-17 Score=180.84 Aligned_cols=223 Identities=18% Similarity=0.310 Sum_probs=159.5
Q ss_pred ccCccCchHHHHHHHHHHHhcccchhhhccCCccCc-e--EEEECCCCCCchhHHHhhhhcc-------cccEEEeeccc
Q 003000 392 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG-G--ILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQ 461 (859)
Q Consensus 392 f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~-g--vLL~GPpGtGKTtLakaLA~el-------~~~~~~is~s~ 461 (859)
++++.|+..++..+.+++..+.....+...|+..+. | ++|+||||||||++|+++|+.+ ..+++.++.++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 456889999999999988775555566777876653 3 8999999999999999998865 23588899888
Q ss_pred cchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC
Q 003000 462 FVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 541 (859)
Q Consensus 462 ~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~ 541 (859)
+...|+|........+|+.+ .++||||||++.+...+ +.......++..|+..|+. ...+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~-----~~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPD-----NERDYGSEAIEILLQVMEN--QRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCC-----CccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcH
Confidence 88889888776666666664 35799999999985432 1122335577888888874 34668888887643
Q ss_pred C-----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC--Cccc---HHHHHhh--CCCCC-HHHHHHHHHH
Q 003000 542 D-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA--DDVD---YLAVASM--TDGMV-GAELANIVEV 608 (859)
Q Consensus 542 ~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~--~d~d---l~~lA~~--t~G~s-gadL~~Lv~~ 608 (859)
. .++|+|.+ ||+.+|.|++|+.+++..|+..++.+.... ++.. ...+... .+.|. ++++.++++.
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 35799998 999999999999999999999998765432 2211 1112222 23455 8999999998
Q ss_pred HHHHHHHh----CCCccCHHHH
Q 003000 609 AAINMMRD----GRTEITTDDL 626 (859)
Q Consensus 609 A~~~A~~~----~~~~It~edl 626 (859)
|...-..+ +...++.+|+
T Consensus 250 ~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 250 ARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHHHHcCCCCCCCHHHH
Confidence 86543332 3334555554
No 48
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.75 E-value=2.6e-17 Score=177.19 Aligned_cols=210 Identities=20% Similarity=0.310 Sum_probs=152.4
Q ss_pred ccCccCchHHHHHHHHHHHhcccchhhhccCCccCc---eEEEECCCCCCchhHHHhhhhcc-------cccEEEeeccc
Q 003000 392 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG---GILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQ 461 (859)
Q Consensus 392 f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~---gvLL~GPpGtGKTtLakaLA~el-------~~~~~~is~s~ 461 (859)
+++..|++.++..+.+++..+.....+...|...+. +++|+|||||||||+|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 567889999999999998876554555566776544 48999999999999999999864 23677888888
Q ss_pred cchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC
Q 003000 462 FVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 541 (859)
Q Consensus 462 ~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~ 541 (859)
+...|+|.....+..+|+.+. ++||||||+|.+... .........++.|+..|+.. ..++++|++++..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcc
Confidence 888899888777777887653 579999999998531 11122345778888888853 4556666665433
Q ss_pred C-----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCccc-HHHHHhh---------CCCCCHHHHHHHH
Q 003000 542 D-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD-YLAVASM---------TDGMVGAELANIV 606 (859)
Q Consensus 542 ~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d-l~~lA~~---------t~G~sgadL~~Lv 606 (859)
+ .++|++.+ ||+..|.||+|+.+++..|++.++......-+.+ +..++.. .....++.+.+++
T Consensus 154 ~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 154 EMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred hhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 2 37899988 9999999999999999999999987654322111 2233211 1124578888888
Q ss_pred HHHHHHHH
Q 003000 607 EVAAINMM 614 (859)
Q Consensus 607 ~~A~~~A~ 614 (859)
+.|.....
T Consensus 232 e~a~~~~~ 239 (261)
T TIGR02881 232 EKAIRRQA 239 (261)
T ss_pred HHHHHHHH
Confidence 88765543
No 49
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.1e-18 Score=178.52 Aligned_cols=201 Identities=24% Similarity=0.314 Sum_probs=156.0
Q ss_pred eEEEECCCCCCchhHHHhhhhccc---------ccEEEeeccccchhhhcccchhhhhHHHHHHhc---CCc--EEEhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEIYVGVGASRVRSLYQEAKDN---APS--VVFIDE 493 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~---------~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~---~p~--Il~iDE 493 (859)
-+||+||||||||+|+|+||..+. ..++++++..+.++|++...+.+..+|+..... ..+ .++|||
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDE 258 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDE 258 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHH
Confidence 399999999999999999999773 457889999999999999999888888887542 222 367999
Q ss_pred hHhhhhccC-CcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHH
Q 003000 494 LDAVGRERG-LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEIL 572 (859)
Q Consensus 494 Id~l~~~r~-~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il 572 (859)
+++++..|. ..+++.....-.++|.+|.+||.+...+||++++|+|..+.||.||.. |-|.+.++++|+...+.+|+
T Consensus 259 VESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Il 336 (423)
T KOG0744|consen 259 VESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEIL 336 (423)
T ss_pred HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHH
Confidence 999987763 223333445557899999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHccCC-------------CCCccc-----HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003000 573 KVHARKKP-------------MADDVD-----YLAVASM-TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 573 ~~~l~~~~-------------~~~d~d-----l~~lA~~-t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~ 632 (859)
+..+.... ....+. ...++.. +.|.||+.|+.|=-.|. |..-....|+.+++..|+-.
T Consensus 337 kscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 337 KSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLE 413 (423)
T ss_pred HHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHH
Confidence 98775420 101111 1222322 58999999988866554 32333457999998887654
No 50
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.6e-18 Score=207.61 Aligned_cols=285 Identities=20% Similarity=0.172 Sum_probs=208.1
Q ss_pred hhhhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003000 188 IDSLCVNAYTPPLKKPESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYEESLQDA 267 (859)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~~~rl~~l~~el~~~ 267 (859)
+||+|+.+.+++.+.| .+|+........++.++..|+.+.+....+ |+. .+.+...
T Consensus 403 ~dEa~a~~~~~~~~lP--------------------~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~--r~~--~~~~~~~ 458 (898)
T KOG1051|consen 403 EDEAAALVKSQAESLP--------------------PWLQNLERVDIKLQDEISELQKKWNQALHK--RPS--LESLAPS 458 (898)
T ss_pred HHHHHHHHhhhhhhCC--------------------HHHHhhhhhhhhhHHHHHHHHHhhhhhhcc--ccc--ccccccc
Confidence 6777777777666666 444444444444444444444444422222 555 7778888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Q 003000 268 RDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDE 347 (859)
Q Consensus 268 ~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~ 347 (859)
+..+..+...|..++..++.+... +...+.-.- .+..++..+...+....+..++ ...... .
T Consensus 459 ~~~~~~l~~~~~~~~s~~~~l~~~---------~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p-~~~~~~--~----- 520 (898)
T KOG1051|consen 459 KPTQQPLSASVDSERSVIEELKLK---------KNSLDRNSL-LAKAHRPNDYTRETDLRYGRIP-DELSEK--S----- 520 (898)
T ss_pred ccccccchhhhccchhHHhhhccc---------cCCcccchh-hhcccCCCCcchhhhccccccc-hhhhhh--c-----
Confidence 888899999999999988888766 555544443 4445666666666666666666 111110 0
Q ss_pred HHhhhhhcCchhHHhhchhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccC-
Q 003000 348 IEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP- 426 (859)
Q Consensus 348 ~~~~~~~~~~~~k~~v~~~~i~~~vs~~tgip~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~- 426 (859)
..+. .....+..++++|+|+|+......+....+.....+.+.|.++++++..+.......+.|+..|
T Consensus 521 ------~~~~-----~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~ 589 (898)
T KOG1051|consen 521 ------NDNQ-----GGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPN 589 (898)
T ss_pred ------cccc-----CCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCC
Confidence 0010 1666889999999999999888777777777778899999999999999988888888888774
Q ss_pred -ce-EEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh---------hhcccchhhhhHHHHHHhcCCcEEEhh
Q 003000 427 -GG-ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFID 492 (859)
Q Consensus 427 -~g-vLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~---------~~g~~~~~l~~lfe~a~~~~p~Il~iD 492 (859)
.. ++|.||.|+|||-||++||..+ ...++++++++|++. |+|.... ..+++.+++.+++||+||
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g--g~LteavrrrP~sVVLfd 667 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFE 667 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH--HHHHHHHhcCCceEEEEe
Confidence 33 9999999999999999999977 678999999986543 5555444 579999999999999999
Q ss_pred hhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---------CCCCeEEEeccCCC
Q 003000 493 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP 541 (859)
Q Consensus 493 EId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~---------~~~~vlVIatTN~~ 541 (859)
|||+.++. +++.|++.+|... +..|+|||+|+|..
T Consensus 668 eIEkAh~~--------------v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 668 EIEKAHPD--------------VLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred chhhcCHH--------------HHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 99999877 8898998888632 34689999999864
No 51
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.72 E-value=7.8e-17 Score=175.41 Aligned_cols=210 Identities=19% Similarity=0.290 Sum_probs=155.2
Q ss_pred CccCchHHHHHHHHHHHhcccchhhhccCCcc--C-ceEEEECCCCCCchhHHHhhhhccc-------ccEEEeeccccc
Q 003000 394 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI--P-GGILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFV 463 (859)
Q Consensus 394 ~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~--~-~gvLL~GPpGtGKTtLakaLA~el~-------~~~~~is~s~~~ 463 (859)
.++|+..++..+.+++.....+..+...|+.. | .+++|+||||||||++|+++|..+. .+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 47899999999999988876666777788765 3 3699999999999999999988662 368899988888
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC--
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-- 541 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~-- 541 (859)
..|+|.....+..+|+.+ .+++|||||++.+...+. .......+++.|+..|+. ...+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRM 172 (284)
T ss_pred HhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHH
Confidence 888888777777777765 347999999998853211 112334577888888874 34678888877643
Q ss_pred C---CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcc-cHHHHHhh------CCC-CCHHHHHHHHHHHH
Q 003000 542 D---ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV-DYLAVASM------TDG-MVGAELANIVEVAA 610 (859)
Q Consensus 542 ~---~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~-dl~~lA~~------t~G-~sgadL~~Lv~~A~ 610 (859)
+ .++|+|.+ ||+..|.||+|+.+++..|+..++.+....-+. ....+..+ .+. -.++.+.++++.+.
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 3 25899999 999999999999999999999999875432111 12233332 122 24799999999887
Q ss_pred HHHHH
Q 003000 611 INMMR 615 (859)
Q Consensus 611 ~~A~~ 615 (859)
.....
T Consensus 251 ~~~~~ 255 (284)
T TIGR02880 251 LRQAN 255 (284)
T ss_pred HHHHH
Confidence 65433
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=1e-15 Score=187.72 Aligned_cols=188 Identities=28% Similarity=0.380 Sum_probs=131.9
Q ss_pred HHHHHHHhcCCCCcccccCccc-----cc-cCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhH
Q 003000 369 GARVRRAYGKGLPQYLERGVDV-----KF-SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLL 442 (859)
Q Consensus 369 ~~~vs~~tgip~~~~~~~~~~~-----~f-~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtL 442 (859)
...+..++++|.........++ .| .++.|+..++..+.+.+.... . .+-..+..++|+||||||||++
T Consensus 290 ~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~---~---~~~~~~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 290 RNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQK---L---RGKMKGPILCLVGPPGVGKTSL 363 (775)
T ss_pred HHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHH---h---hcCCCCceEEEECCCCCCHHHH
Confidence 4556677888876654432111 22 335677777766665443211 0 0111123599999999999999
Q ss_pred HHhhhhcccccEEEeeccccch---------hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHH
Q 003000 443 AKAVAGEAGVNFFSISASQFVE---------IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERD 513 (859)
Q Consensus 443 akaLA~el~~~~~~is~s~~~~---------~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r 513 (859)
+++||+.++.+++.++++.... .|+|...+.+...|..+....| |++|||||++.+... +.
T Consensus 364 Ak~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~------~~--- 433 (775)
T TIGR00763 364 GKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR------GD--- 433 (775)
T ss_pred HHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC------CC---
Confidence 9999999999999998765432 3666666667667776665556 899999999975311 11
Q ss_pred HHHHHHHHhhcc-----cc--------CCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHH
Q 003000 514 ATLNQLLVCLDG-----FE--------GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 576 (859)
Q Consensus 514 ~~l~~LL~~ld~-----~~--------~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l 576 (859)
..+.|+..||. +. +.++++||+|||.++.++++|++ ||+ +|.|+.|+.+++..|++.++
T Consensus 434 -~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 434 -PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred -HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 24556665552 11 22578999999999999999999 995 78999999999999998876
No 53
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.67 E-value=2.1e-16 Score=184.00 Aligned_cols=240 Identities=23% Similarity=0.262 Sum_probs=167.7
Q ss_pred hhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHh
Q 003000 283 KDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMA 362 (859)
Q Consensus 283 ~~~~~i~~l~~~~~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~ 362 (859)
+.++.|.++ ..+.++.|.|||+.|.++++ ++.....++++.+++++++++..+.+....+... ++.
T Consensus 215 ~V~t~I~~l-d~g~l~~y~Gny~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~-----------k~a 280 (530)
T COG0488 215 NVATHILEL-DRGKLTPYKGNYSSYLEQKA--ERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKA-----------KKA 280 (530)
T ss_pred HHhhheEEe-cCCceeEecCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----------HHH
Confidence 356677788 88999999999999999999 4445555556666777777777776544322211 111
Q ss_pred hchhhhHHHHHHHhcCCCCcccccCccccccCcc-CchHHHHHHHHHHHhccc-chhhhccCCccCce--EEEECCCCCC
Q 003000 363 MQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVA-GLGKIRLELEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVG 438 (859)
Q Consensus 363 v~~~~i~~~vs~~tgip~~~~~~~~~~~~f~~~~-gl~~~v~~l~~~v~~~~~-~~~~~~~gl~~~~g--vLL~GPpGtG 438 (859)
....+..+.+........+........+.|.... ..++.+..++++...|.+ ..++.++++.+.+| |.|+||||+|
T Consensus 281 ~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~G 360 (530)
T COG0488 281 KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAG 360 (530)
T ss_pred HHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCC
Confidence 1111112222110000111111222334666665 478899999999999965 47888999988877 9999999999
Q ss_pred chhHHHhhhhcccccEEEeeccccch-hhhcccchhh---hhHHHHHHhcCCcEEEhhhhHhhhhccCCcCC--------
Q 003000 439 KTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASRV---RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG-------- 506 (859)
Q Consensus 439 KTtLakaLA~el~~~~~~is~s~~~~-~~~g~~~~~l---~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~-------- 506 (859)
||||+|.|++.+++..+.|.++..+. .|+.|....+ ..+++.+....|... --++..++...++.+.
T Consensus 361 KSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~-e~~~r~~L~~f~F~~~~~~~~v~~ 439 (530)
T COG0488 361 KSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD-EQEVRAYLGRFGFTGEDQEKPVGV 439 (530)
T ss_pred HHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc-HHHHHHHHHHcCCChHHHhCchhh
Confidence 99999999999988888888776543 3777766443 368888888777643 5567777766555443
Q ss_pred -CCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCCC
Q 003000 507 -SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 543 (859)
Q Consensus 507 -sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~~ 543 (859)
|||++.|..+..++ ...+|++|+ .+|||.|.
T Consensus 440 LSGGEk~Rl~La~ll------~~~pNvLiLDEPTNhLDi 472 (530)
T COG0488 440 LSGGEKARLLLAKLL------LQPPNLLLLDEPTNHLDI 472 (530)
T ss_pred cCHhHHHHHHHHHHh------ccCCCEEEEcCCCccCCH
Confidence 99999999999999 678999999 99999874
No 54
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.1e-15 Score=172.00 Aligned_cols=242 Identities=24% Similarity=0.308 Sum_probs=161.5
Q ss_pred HHHHhcCCCCcccccCcc------ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHh
Q 003000 372 VRRAYGKGLPQYLERGVD------VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKA 445 (859)
Q Consensus 372 vs~~tgip~~~~~~~~~~------~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLaka 445 (859)
+.....+|.........+ +.-.+..|+++++..+-+...... +...+. ..-+||+||||+|||+|+++
T Consensus 296 lDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~---l~~~~k---GpILcLVGPPGVGKTSLgkS 369 (782)
T COG0466 296 LDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQK---LTKKLK---GPILCLVGPPGVGKTSLGKS 369 (782)
T ss_pred HHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHH---HhccCC---CcEEEEECCCCCCchhHHHH
Confidence 334455565544433222 223567799999977666544221 111111 12389999999999999999
Q ss_pred hhhcccccEEEeeccccchh---------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHH
Q 003000 446 VAGEAGVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATL 516 (859)
Q Consensus 446 LA~el~~~~~~is~s~~~~~---------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l 516 (859)
||..++..|++++.+...+. |+|...+++-+-...+...+| +++|||||+++.+... . --
T Consensus 370 IA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rG------D----Pa 438 (782)
T COG0466 370 IAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRG------D----PA 438 (782)
T ss_pred HHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCC------C----hH
Confidence 99999999999999876543 899988888777777888888 8999999999765321 1 23
Q ss_pred HHHHHhhcc-----c--------cCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHc-----c
Q 003000 517 NQLLVCLDG-----F--------EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR-----K 578 (859)
Q Consensus 517 ~~LL~~ld~-----~--------~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~-----~ 578 (859)
..||..||- | .+-++|+||+|+|..+.++..|+. |+. +|.++-++..+...|.+.|+- .
T Consensus 439 SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~ 515 (782)
T COG0466 439 SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKE 515 (782)
T ss_pred HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHH
Confidence 455655553 1 123579999999999999999999 885 999999999999999998872 2
Q ss_pred CCCCC------cccHHHHH-hhCC--CCC--HHHHHHHHHHHHHHHHHhCCC---ccCHHHHHHHHHHH
Q 003000 579 KPMAD------DVDYLAVA-SMTD--GMV--GAELANIVEVAAINMMRDGRT---EITTDDLLQAAQIE 633 (859)
Q Consensus 579 ~~~~~------d~dl~~lA-~~t~--G~s--gadL~~Lv~~A~~~A~~~~~~---~It~edl~~Al~~~ 633 (859)
.++.. +.-+..+. .+|. |.- -+.|..+|+.++..-...... .|+..++..-+...
T Consensus 516 ~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 516 HGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred cCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCc
Confidence 23221 11122222 2221 211 256667777766554443322 46777777766543
No 55
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.5e-16 Score=178.49 Aligned_cols=220 Identities=23% Similarity=0.401 Sum_probs=175.4
Q ss_pred HHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCc
Q 003000 408 IVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPS 487 (859)
Q Consensus 408 ~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~ 487 (859)
.+..+..+..-...+......+||+|+|||||||++++.|.+++.+++.++|.++...-.+.....+...|..++...|+
T Consensus 413 l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pa 492 (953)
T KOG0736|consen 413 LVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPA 492 (953)
T ss_pred HHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCce
Confidence 33334333333334455556799999999999999999999999999999999998887777788889999999999999
Q ss_pred EEEhhhhHhhhhccCCcCCCCchhHH--HHHHHHHHhhcccc-CCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCC
Q 003000 488 VVFIDELDAVGRERGLIKGSGGQERD--ATLNQLLVCLDGFE-GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPG 564 (859)
Q Consensus 488 Il~iDEId~l~~~r~~~~~sgge~~r--~~l~~LL~~ld~~~-~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd 564 (859)
|||+-.+|.++.+. .||+..+ ..+..++. ++.+. +..+++||++|+..+.+++.+.+ -|-..|.++.|+
T Consensus 493 vifl~~~dvl~id~-----dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~ls 564 (953)
T KOG0736|consen 493 VLFLRNLDVLGIDQ-----DGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALS 564 (953)
T ss_pred EEEEeccceeeecC-----CCchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCC
Confidence 99999999987543 2233332 23444444 33333 56789999999999999999988 888899999999
Q ss_pred HHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHH---HhC-----------------CCccCHH
Q 003000 565 LIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMM---RDG-----------------RTEITTD 624 (859)
Q Consensus 565 ~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~---~~~-----------------~~~It~e 624 (859)
.++|.+||+.++....+..++....++..|.||+.+++..++..+-..+. ... ...++++
T Consensus 565 e~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~e 644 (953)
T KOG0736|consen 565 EEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEE 644 (953)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHH
Confidence 99999999999999999999999999999999999999998876622211 111 1569999
Q ss_pred HHHHHHHHHHc
Q 003000 625 DLLQAAQIEER 635 (859)
Q Consensus 625 dl~~Al~~~~~ 635 (859)
||..++.+...
T Consensus 645 df~kals~~~~ 655 (953)
T KOG0736|consen 645 DFDKALSRLQK 655 (953)
T ss_pred HHHHHHHHHHH
Confidence 99999986643
No 56
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.9e-16 Score=177.25 Aligned_cols=237 Identities=24% Similarity=0.249 Sum_probs=172.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhccc----ccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAG----VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~----~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~ 502 (859)
+.++|.||+|+|||.|+++|+.++. .++..++|+.+...-+......+..+|..+..++|+|+++|++|.+.+...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 4599999999999999999999773 456678888876555555556678899999999999999999999976322
Q ss_pred CcCCCCchhHHHHHHHHH-HhhccccC-CCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCC
Q 003000 503 LIKGSGGQERDATLNQLL-VCLDGFEG-RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 580 (859)
Q Consensus 503 ~~~~sgge~~r~~l~~LL-~~ld~~~~-~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~ 580 (859)
... +........++.++ +.+..+.. +..+.||++.+....|+|-|.+|++|+.++.+|.|+..+|.+||+..+.+..
T Consensus 512 ~e~-~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 512 NEN-GQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 111 11222223344444 33343333 3446888999999999999999999999999999999999999999888765
Q ss_pred CC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHcCccccccc--cc-hhh-hHH
Q 003000 581 MA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD----GRTEITTDDLLQAAQIEERGMLDRKER--SS-ETW-RQV 651 (859)
Q Consensus 581 ~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~----~~~~It~edl~~Al~~~~~g~~~~~~~--~~-e~~-~~v 651 (859)
.. ..-|++-++..|+||...|+..++.+|...|... +...+|.++|..+++......+..... +. -.| .+-
T Consensus 591 ~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~dig 670 (952)
T KOG0735|consen 591 SDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIG 670 (952)
T ss_pred hhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecc
Confidence 32 1233445999999999999999999998887732 334799999999998654321111111 11 112 244
Q ss_pred HHHHHHHHHHHHh
Q 003000 652 AINEAAMAVVAVN 664 (859)
Q Consensus 652 A~hEAGHAvva~l 664 (859)
+.||+-.++...+
T Consensus 671 g~~~~k~~l~~~i 683 (952)
T KOG0735|consen 671 GLFEAKKVLEEVI 683 (952)
T ss_pred cHHHHHHHHHHHH
Confidence 6788887776543
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=3.4e-16 Score=189.23 Aligned_cols=200 Identities=19% Similarity=0.252 Sum_probs=141.1
Q ss_pred hhchhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCcc---Cc-eEEEECCCCC
Q 003000 362 AMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---PG-GILLCGPPGV 437 (859)
Q Consensus 362 ~v~~~~i~~~vs~~tgip~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~---~~-gvLL~GPpGt 437 (859)
.++..++.+++++|+|+|+......+..........+...+.++++++..+.........|+.. |. .++|+|||||
T Consensus 420 ~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~Gv 499 (758)
T PRK11034 420 TVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGV 499 (758)
T ss_pred ccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCC
Confidence 3666789999999999999887765543322222223333334444444333333333344432 33 4999999999
Q ss_pred CchhHHHhhhhcccccEEEeeccccchh-----hhcccchh-----hhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCC
Q 003000 438 GKTLLAKAVAGEAGVNFFSISASQFVEI-----YVGVGASR-----VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507 (859)
Q Consensus 438 GKTtLakaLA~el~~~~~~is~s~~~~~-----~~g~~~~~-----l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~s 507 (859)
|||++|++||..++.+++.++++++... .+|...+. -..+.+.++..+.+|+||||||++.+.
T Consensus 500 GKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~------- 572 (758)
T PRK11034 500 GKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD------- 572 (758)
T ss_pred CHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH-------
Confidence 9999999999999999999999987542 22221111 123556667778899999999999765
Q ss_pred CchhHHHHHHHHHHhhccc---------cCCCCeEEEeccCCC-------------------------CCCCccCCCCCc
Q 003000 508 GGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRP-------------------------DILDPALVRPGR 553 (859)
Q Consensus 508 gge~~r~~l~~LL~~ld~~---------~~~~~vlVIatTN~~-------------------------~~LdpaLlrpgR 553 (859)
+++.|++.|+.. .+..|++||+|||.. ..+.|+|++ |
T Consensus 573 -------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--R 643 (758)
T PRK11034 573 -------VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--R 643 (758)
T ss_pred -------HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--c
Confidence 888899888742 123578999999932 126688888 9
Q ss_pred ccccccCCCCCHHHHHHHHHHHHc
Q 003000 554 FDRKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 554 fd~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
+|.+|.|++++.++...|+...+.
T Consensus 644 id~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 644 LDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987764
No 58
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=9.3e-16 Score=187.11 Aligned_cols=233 Identities=21% Similarity=0.235 Sum_probs=161.6
Q ss_pred HhhchhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCcc---Cce-EEEECCCC
Q 003000 361 MAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---PGG-ILLCGPPG 436 (859)
Q Consensus 361 ~~v~~~~i~~~vs~~tgip~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~---~~g-vLL~GPpG 436 (859)
..++..++...++.|+|+|+......+..........+.+.+.++++++..+.......+.|+.. |.| ++|+||+|
T Consensus 415 ~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~G 494 (731)
T TIGR02639 415 ANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTG 494 (731)
T ss_pred cccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCC
Confidence 34777889999999999998776554333322222334444444555555444444444555543 343 89999999
Q ss_pred CCchhHHHhhhhcccccEEEeeccccchh------------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCc
Q 003000 437 VGKTLLAKAVAGEAGVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 504 (859)
Q Consensus 437 tGKTtLakaLA~el~~~~~~is~s~~~~~------------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~ 504 (859)
||||+||++||..++.+++.++++++.+. |+|.... +.+.+.++..+++|++|||+|++++.
T Consensus 495 vGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~--~~l~~~~~~~p~~VvllDEieka~~~---- 568 (731)
T TIGR02639 495 VGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQG--GLLTEAVRKHPHCVLLLDEIEKAHPD---- 568 (731)
T ss_pred ccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchh--hHHHHHHHhCCCeEEEEechhhcCHH----
Confidence 99999999999999999999999987653 3333222 34667777888899999999999775
Q ss_pred CCCCchhHHHHHHHHHHhhccc---------cCCCCeEEEeccCCCC-------------------------CCCccCCC
Q 003000 505 KGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-------------------------ILDPALVR 550 (859)
Q Consensus 505 ~~sgge~~r~~l~~LL~~ld~~---------~~~~~vlVIatTN~~~-------------------------~LdpaLlr 550 (859)
+.+.|++.|++. .+..+++||+|||... .+.|+|+.
T Consensus 569 ----------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~ 638 (731)
T TIGR02639 569 ----------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN 638 (731)
T ss_pred ----------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh
Confidence 788888888753 1245789999998742 25778877
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHccC-------CCC---CcccHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 003000 551 PGRFDRKIFIPKPGLIGRMEILKVHARKK-------PMA---DDVDYLAVASM--TDGMVGAELANIVEVAAI 611 (859)
Q Consensus 551 pgRfd~~I~~~~Pd~~eR~~Il~~~l~~~-------~~~---~d~dl~~lA~~--t~G~sgadL~~Lv~~A~~ 611 (859)
|||.+|.|.+++.++...|++..+.+. ++. ++..+..|+.. ...+-.+.|..+++....
T Consensus 639 --Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~ 709 (731)
T TIGR02639 639 --RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIK 709 (731)
T ss_pred --cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhH
Confidence 999999999999999999999877532 111 12223445542 344556777666665443
No 59
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.6e-14 Score=167.47 Aligned_cols=217 Identities=41% Similarity=0.678 Sum_probs=191.9
Q ss_pred cchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhh
Q 003000 414 HGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDE 493 (859)
Q Consensus 414 ~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDE 493 (859)
.+..+..++...+.+++++||||+|||+++++++.. +..+..++.......++|.....++.+|+.+....|+++++|+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 6 EPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred CHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 455677889999999999999999999999999999 6656778888888899999999999999999999999999999
Q ss_pred hHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHH
Q 003000 494 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILK 573 (859)
Q Consensus 494 Id~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~ 573 (859)
++.+.+.+.. ..+...+.+++.++..++++. ...+++++.||.+..+++++.+||||++.+.++.|+...+.+|+.
T Consensus 85 ~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~ 160 (494)
T COG0464 85 IDALAPKRSS---DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQ 160 (494)
T ss_pred hhhcccCccc---cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHH
Confidence 9999887654 445566678899999999888 444888899999999999999999999999999999999999999
Q ss_pred HHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC------CCccCHHHHHHHHHHHHc
Q 003000 574 VHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------RTEITTDDLLQAAQIEER 635 (859)
Q Consensus 574 ~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~------~~~It~edl~~Al~~~~~ 635 (859)
.+........+.++..++..+.|++++++..++..+...+.++. ...++.+++.+++..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 161 IHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99988888878999999999999999999999999988887774 346899999999988654
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.58 E-value=4.3e-14 Score=155.31 Aligned_cols=210 Identities=21% Similarity=0.276 Sum_probs=146.9
Q ss_pred cccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhccc
Q 003000 391 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG 470 (859)
Q Consensus 391 ~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~ 470 (859)
+|++..|..+.+..+..++...... -..+.+++|+||||||||+|++++|.+++.++..+..+....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 4677888888887776665432211 123456999999999999999999999987766555432211
Q ss_pred chhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc----------------CCCCeEE
Q 003000 471 ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGNVIT 534 (859)
Q Consensus 471 ~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~----------------~~~~vlV 534 (859)
...+...+... ..+.++||||++.+... ....|+..+++.. ....+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11122222222 34679999999988543 2222333332211 1234788
Q ss_pred EeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003000 535 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM 613 (859)
Q Consensus 535 IatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A 613 (859)
|++||.+..+++++++ ||...+.|++|+.+++.+|++..+....+. ++..+..++..+.|.. +.+.++++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 8999999999999988 998899999999999999999887654433 2334677888888855 66678888877777
Q ss_pred HHhCCCccCHHHHHHHHHH
Q 003000 614 MRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 614 ~~~~~~~It~edl~~Al~~ 632 (859)
...+...|+.+++..++..
T Consensus 210 ~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 6666677999999999876
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.57 E-value=2.6e-14 Score=156.45 Aligned_cols=178 Identities=26% Similarity=0.409 Sum_probs=130.0
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcC----CcEEEhhhhHhhhhcc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELDAVGRER 501 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~----p~Il~iDEId~l~~~r 501 (859)
..+++|||||||||||||+.||+..+.+|..++... .+.+.++.+++.++... -.|+|+|||+.+...
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~- 119 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA- 119 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-
Confidence 346899999999999999999999999999988743 33456788998886543 369999999998654
Q ss_pred CCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc--CCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHcc-
Q 003000 502 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK- 578 (859)
Q Consensus 502 ~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT--N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~- 578 (859)
....||-.++ ++.+++|++| |+.-.++++|++++ +++.+.+.+.++...+++..+..
T Consensus 120 -------------QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlSR~---~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 120 -------------QQDALLPHVE----NGTIILIGATTENPSFELNPALLSRA---RVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred -------------hhhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhhhh---heeeeecCCHHHHHHHHHHHHhhh
Confidence 5667776665 5678888655 77778999999944 37889999999999999874422
Q ss_pred -CCCC------CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 579 -KPMA------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 579 -~~~~------~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
.++. ++.-...++..+.|-..+-| ++++.+...+ +.+. .++.+++.+++++..
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAALSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHHHhc-CCCc-ccCHHHHHHHHhhhh
Confidence 2222 23335677888887666555 6666665443 2233 455888888877643
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.57 E-value=6.2e-14 Score=155.90 Aligned_cols=213 Identities=21% Similarity=0.244 Sum_probs=151.8
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhc
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVG 468 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g 468 (859)
...|++..|.++.+..+..++...... -..+.+++|+||||||||+||+++|++++..+..++...+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~---- 89 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK---- 89 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC----
Confidence 457888889888887777666543211 123557999999999999999999999998877665543211
Q ss_pred ccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc----------------CCCCe
Q 003000 469 VGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGNV 532 (859)
Q Consensus 469 ~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~----------------~~~~v 532 (859)
...+..++... ..++++|||||+.+... ....|...|+... .-.++
T Consensus 90 --~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 90 --PGDLAAILTNL--EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred --hHHHHHHHHhc--ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 12233344332 35689999999988532 1122222232211 11347
Q ss_pred EEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 003000 533 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELANIVEVAAI 611 (859)
Q Consensus 533 lVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~-d~dl~~lA~~t~G~sgadL~~Lv~~A~~ 611 (859)
.+|++||.+..++++|.+ ||+..+.|++|+.+++.+|++..+....+.- +..+..++..+.|.. +.+.++++.+..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 888999999999999988 9999999999999999999998887665442 233678888888754 777788888777
Q ss_pred HHHHhCCCccCHHHHHHHHHHH
Q 003000 612 NMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 612 ~A~~~~~~~It~edl~~Al~~~ 633 (859)
.+...+...|+.+++..++...
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHHh
Confidence 7766666689999999998654
No 63
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.56 E-value=7e-13 Score=161.80 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=149.2
Q ss_pred HHHHHhcCCCCcccccCccc-----cc-cCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHH
Q 003000 371 RVRRAYGKGLPQYLERGVDV-----KF-SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAK 444 (859)
Q Consensus 371 ~vs~~tgip~~~~~~~~~~~-----~f-~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLak 444 (859)
-+.....+|.........++ .+ .+..|+.+++..+.+....... .+-.....++|+||||+|||++++
T Consensus 294 yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~------~~~~~g~~i~l~GppG~GKTtl~~ 367 (784)
T PRK10787 294 YIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR------VNKIKGPILCLVGPPGVGKTSLGQ 367 (784)
T ss_pred HHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh------cccCCCceEEEECCCCCCHHHHHH
Confidence 34444556665544432222 22 3367888888766554443211 111112349999999999999999
Q ss_pred hhhhcccccEEEeeccccchh---------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHH
Q 003000 445 AVAGEAGVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDAT 515 (859)
Q Consensus 445 aLA~el~~~~~~is~s~~~~~---------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~ 515 (859)
.||+.++.++++++++..... |.|...+.+...+..+....| |++|||+|++..... +. .
T Consensus 368 ~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~------g~----~ 436 (784)
T PRK10787 368 SIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR------GD----P 436 (784)
T ss_pred HHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC------CC----H
Confidence 999999999999988765432 555555544444444433445 899999999875421 10 3
Q ss_pred HHHHHHhhcc-----c--------cCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHcc----
Q 003000 516 LNQLLVCLDG-----F--------EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK---- 578 (859)
Q Consensus 516 l~~LL~~ld~-----~--------~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~---- 578 (859)
.+.|+..+|. + .+-+++++|+|+|... |+|+|++ ||. +|.|+.++.++..+|++.++..
T Consensus 437 ~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~ 512 (784)
T PRK10787 437 ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIE 512 (784)
T ss_pred HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHH
Confidence 4566666663 1 1237899999999984 9999998 995 7999999999999999988842
Q ss_pred -CCCC-C--ccc---HHHHH-hhCCCCCHHHHHHHHHHHHHHHH----HhCC---CccCHHHHHHHHH
Q 003000 579 -KPMA-D--DVD---YLAVA-SMTDGMVGAELANIVEVAAINMM----RDGR---TEITTDDLLQAAQ 631 (859)
Q Consensus 579 -~~~~-~--d~d---l~~lA-~~t~G~sgadL~~Lv~~A~~~A~----~~~~---~~It~edl~~Al~ 631 (859)
..+. . .++ +..++ ..+..+-.+.|..++...+..+. ..+. -.|+.+++.+.+.
T Consensus 513 ~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 513 RNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 1111 1 111 33333 33344445666655554443322 2222 3588888877654
No 64
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.54 E-value=5.4e-14 Score=145.23 Aligned_cols=190 Identities=22% Similarity=0.293 Sum_probs=123.6
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 467 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 467 (859)
....|++..|..+.+..+.-++...... -....+++|+||||+||||||+.||++++.++..+++..+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 4568999999998887766555543211 122346999999999999999999999999998887654221
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----C-----------CCC
Q 003000 468 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G-----------RGN 531 (859)
Q Consensus 468 g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----~-----------~~~ 531 (859)
...+..++... ....|+|||||+.+... +...|+..|+++. + -.+
T Consensus 89 ---~~dl~~il~~l--~~~~ILFIDEIHRlnk~--------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ---AGDLAAILTNL--KEGDILFIDEIHRLNKA--------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC--HH--------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---HHHHHHHHHhc--CCCcEEEEechhhccHH--------------HHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 12223333333 24579999999998654 6677777777532 1 135
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHH
Q 003000 532 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVA 609 (859)
Q Consensus 532 vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~t~G~sgadL~~Lv~~A 609 (859)
+.+|+||+....|.+.|+. ||..+..+..++.++...|++......++.-+ .....+|.++.| +++-.-+|++.+
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 8899999999999999988 99998999999999999999987776665533 335778888886 566555666654
No 65
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.1e-13 Score=153.22 Aligned_cols=187 Identities=22% Similarity=0.335 Sum_probs=135.9
Q ss_pred HHHHHhcCCCCcccccCc------cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHH
Q 003000 371 RVRRAYGKGLPQYLERGV------DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAK 444 (859)
Q Consensus 371 ~vs~~tgip~~~~~~~~~------~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLak 444 (859)
-+...+.+|......+.. .+.-++..|+.+++..+.+.+..- .+. |-.-..-+||+||||+|||+++|
T Consensus 383 YLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~---kLr---gs~qGkIlCf~GPPGVGKTSI~k 456 (906)
T KOG2004|consen 383 YLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVG---KLR---GSVQGKILCFVGPPGVGKTSIAK 456 (906)
T ss_pred HHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHH---hhc---ccCCCcEEEEeCCCCCCcccHHH
Confidence 344445555554443322 223356778999987777665421 111 11112239999999999999999
Q ss_pred hhhhcccccEEEeeccccchh---------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHH
Q 003000 445 AVAGEAGVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDAT 515 (859)
Q Consensus 445 aLA~el~~~~~~is~s~~~~~---------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~ 515 (859)
+||..++..|++++.+.+... |+|...+++-+.+..+...+| +++|||||+++... .|+ -
T Consensus 457 SIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~------qGD----P 525 (906)
T KOG2004|consen 457 SIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH------QGD----P 525 (906)
T ss_pred HHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC------CCC----h
Confidence 999999999999999887654 899998888888888888888 89999999997321 111 2
Q ss_pred HHHHHHhhcc-------------ccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHc
Q 003000 516 LNQLLVCLDG-------------FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 516 l~~LL~~ld~-------------~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
-..||..||- -.+-+.|+||+|.|..+.|+++|+. |+. +|.++-+..++...|-+.|+-
T Consensus 526 asALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 526 ASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred HHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 2344544442 1123569999999999999999998 885 899999999999999998873
No 66
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.49 E-value=2.7e-13 Score=165.62 Aligned_cols=198 Identities=24% Similarity=0.357 Sum_probs=143.8
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc----------cccEEEeeccccc--hhhhcccchhhhhHHHHHHhcCCcEEEhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDE 493 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~--~~~~g~~~~~l~~lfe~a~~~~p~Il~iDE 493 (859)
..+++|+||||||||++++.||..+ +..++.++++.+. ..|.|.....++.+|+.+....++|+||||
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 3468999999999999999999976 6678888888776 458888888999999999877889999999
Q ss_pred hHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC-----CCCccCCCCCcccccccCCCCCHHHH
Q 003000 494 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGR 568 (859)
Q Consensus 494 Id~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR 568 (859)
+|.+.+... .++|.. ...+.|...+. ++.+.+|++||..+ ..|++|.| ||. .|.|+.|+.+++
T Consensus 283 ih~l~~~g~---~~~~~~--~~~~~L~~~l~----~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~ 350 (731)
T TIGR02639 283 IHTIVGAGA---TSGGSM--DASNLLKPALS----SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEET 350 (731)
T ss_pred HHHHhccCC---CCCccH--HHHHHHHHHHh----CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHH
Confidence 999975421 122221 12333443333 56789999998643 47999999 997 799999999999
Q ss_pred HHHHHHHHccC----CC-CCcccHHHHHhhCCCCC-----HHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHH
Q 003000 569 MEILKVHARKK----PM-ADDVDYLAVASMTDGMV-----GAELANIVEVAAINMMRD----GRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 569 ~~Il~~~l~~~----~~-~~d~dl~~lA~~t~G~s-----gadL~~Lv~~A~~~A~~~----~~~~It~edl~~Al~~~~ 634 (859)
..|++...... .+ ..+..+..++..+..|- +.....++++|+...... ....|+.+|+..++....
T Consensus 351 ~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 351 VKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 99999665432 11 23344566666665543 444457788876543322 134599999999998765
Q ss_pred c
Q 003000 635 R 635 (859)
Q Consensus 635 ~ 635 (859)
.
T Consensus 431 g 431 (731)
T TIGR02639 431 H 431 (731)
T ss_pred C
Confidence 3
No 67
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.48 E-value=7.7e-13 Score=139.11 Aligned_cols=214 Identities=22% Similarity=0.257 Sum_probs=160.6
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 467 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 467 (859)
....|++..|..+++..++=.+.+-+.. -....++||+||||.||||||..||++++..+-..++..+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 3557888889888887776655543211 223456999999999999999999999999988777654332
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc----------------CCCC
Q 003000 468 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGN 531 (859)
Q Consensus 468 g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~----------------~~~~ 531 (859)
.+.+-.++... ...+|+|||||+.+.+. +-..|...|++|. +-..
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhcChh--------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 12222233332 34589999999998764 4445555566532 1245
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHHH
Q 003000 532 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVAA 610 (859)
Q Consensus 532 vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~t~G~sgadL~~Lv~~A~ 610 (859)
+.+|++|.+...|...|.. ||.....+..++.++...|+........+.-+ .....+|.++.| +++-...|+++..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999999988 99999999999999999999988876655533 335778888887 5666668999999
Q ss_pred HHHHHhCCCccCHHHHHHHHHHH
Q 003000 611 INMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 611 ~~A~~~~~~~It~edl~~Al~~~ 633 (859)
-.|.-.+...|+.+....|+...
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHHHh
Confidence 99988888899999999888764
No 68
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=9.3e-13 Score=150.62 Aligned_cols=204 Identities=21% Similarity=0.264 Sum_probs=144.3
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc------------
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 453 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------ 453 (859)
+.....|+++.|...++..+..++.. -+++..++|+||+||||||+|+.+|..++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 34567889999988888776665542 1345568999999999999999999987542
Q ss_pred ------------EEEeeccccchhhhcccchhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 454 ------------FFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 454 ------------~~~is~s~~~~~~~g~~~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
++.++.+ ...+...++.+.+.+. ...+.|++|||+|.+... .++
T Consensus 80 sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~--------------A~N 139 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ--------------SFN 139 (484)
T ss_pred HHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH--------------HHH
Confidence 1111111 0112233455554443 234569999999998654 789
Q ss_pred HHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCC
Q 003000 518 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 596 (859)
Q Consensus 518 ~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G 596 (859)
.||..|+ ....++++|++|+.++.|.+.+++ |+. .+.|.+++..+....++..+...++. ++..+..|+..+.|
T Consensus 140 ALLKtLE--EPp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 140 ALLKTLE--EPPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHHHHhh--cCCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998 455789999899999999999999 663 68898999888888888887665443 33446778888876
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 597 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 597 ~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.++..++++.+... ....||.+++.+.+
T Consensus 215 -d~RdAL~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 215 -SVRDMLSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred -hHHHHHHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 566666788766532 22358999887765
No 69
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=5.6e-13 Score=155.79 Aligned_cols=209 Identities=17% Similarity=0.214 Sum_probs=144.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc------------E
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------F 454 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------~ 454 (859)
....+|+++.|.+.++..+.+++.. -+++..+||+||+|+||||+++.||+.+... .
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 4567899999999988877776652 1345668999999999999999999987641 1
Q ss_pred EEe-ec-----cccchhh-h----cccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHH
Q 003000 455 FSI-SA-----SQFVEIY-V----GVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 519 (859)
Q Consensus 455 ~~i-s~-----s~~~~~~-~----g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~L 519 (859)
+.+ +| +.+.+.+ + ..+...++.+.+.+.. ....|++|||+|.+... .+|.|
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~--------------AaNAL 144 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH--------------AFNAM 144 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH--------------HHHHH
Confidence 100 00 0000100 0 1122344556655432 33579999999998654 78999
Q ss_pred HHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCC
Q 003000 520 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMV 598 (859)
Q Consensus 520 L~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~t~G~s 598 (859)
|..|+ ....+++||.+||.++.|.+.+++ |+ ..+.|..++.++..+.+...+...++..+ ..+..|+..+.| +
T Consensus 145 LKTLE--EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s 218 (700)
T PRK12323 145 LKTLE--EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-S 218 (700)
T ss_pred HHhhc--cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998 456788999999999999999998 66 58999999999999988887765544433 335667777765 5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 599 GAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 599 gadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
.++..+++..+.. .+...|+.+++...+
T Consensus 219 ~RdALsLLdQaia----~~~~~It~~~V~~~L 246 (700)
T PRK12323 219 MRDALSLTDQAIA----YSAGNVSEEAVRGML 246 (700)
T ss_pred HHHHHHHHHHHHH----hccCCcCHHHHHHHh
Confidence 6666677776653 233357777776654
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.5e-12 Score=150.83 Aligned_cols=204 Identities=20% Similarity=0.246 Sum_probs=139.3
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc--------------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------- 452 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-------------- 452 (859)
.....|+++.|...++..+..++.. -.+|.+++|+|||||||||+|+++|..+..
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 3567889999988876666554431 135667999999999999999999998753
Q ss_pred ----------cEEEeeccccchhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHH
Q 003000 453 ----------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 518 (859)
Q Consensus 453 ----------~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~ 518 (859)
.++.++.+. ..+...++.+.+.+... ...|++|||++.+... .++.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--------------a~~~ 136 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--------------AFNA 136 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH--------------HHHH
Confidence 223332221 11123345555544322 3469999999998543 5778
Q ss_pred HHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 003000 519 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 597 (859)
Q Consensus 519 LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~ 597 (859)
|+..++. ..+++++|++|+.+..+++++.+ |+. .+.|.+|+..+...+++..+...++. ++..+..|+..+.|
T Consensus 137 LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G- 210 (472)
T PRK14962 137 LLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG- 210 (472)
T ss_pred HHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 8888884 44577777777778899999998 764 89999999999999999887654432 33346778887765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
+.+++.+++..+... .+ ..||.+++..++.
T Consensus 211 dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 211 GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 444555666554322 22 2499999998864
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.44 E-value=1.3e-12 Score=158.28 Aligned_cols=198 Identities=24% Similarity=0.348 Sum_probs=138.1
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc----------cccEEEeeccccc--hhhhcccchhhhhHHHHHHhcCCcEEEhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDE 493 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~--~~~~g~~~~~l~~lfe~a~~~~p~Il~iDE 493 (859)
..+++|+||||||||++++.++..+ +..++.++.+.+. ..|.|.....++.+++.+....++||||||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDE 286 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 286 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEecc
Confidence 3457999999999999999999754 3445555555544 346777778888899988888889999999
Q ss_pred hHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC-----CCCccCCCCCcccccccCCCCCHHHH
Q 003000 494 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGR 568 (859)
Q Consensus 494 Id~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR 568 (859)
|+.+.+... .+++.. ...+.|... ...+.+.||++||.++ ..|++|.| ||+ .|.|+.|+.+++
T Consensus 287 Ih~L~g~g~---~~~g~~--d~~nlLkp~----L~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~ 354 (758)
T PRK11034 287 IHTIIGAGA---ASGGQV--DAANLIKPL----LSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEET 354 (758)
T ss_pred HHHHhccCC---CCCcHH--HHHHHHHHH----HhCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHH
Confidence 999976531 122221 122222222 2467899999998865 47999999 996 799999999999
Q ss_pred HHHHHHHHccCCCCCccc-----HHHHHh-----hCCCCCHHHHHHHHHHHHHHHHH----hCCCccCHHHHHHHHHHHH
Q 003000 569 MEILKVHARKKPMADDVD-----YLAVAS-----MTDGMVGAELANIVEVAAINMMR----DGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 569 ~~Il~~~l~~~~~~~d~d-----l~~lA~-----~t~G~sgadL~~Lv~~A~~~A~~----~~~~~It~edl~~Al~~~~ 634 (859)
..|++.+........++. +...+. .+..+-+.....++++|+..... .....|+.+|+.+++.+..
T Consensus 355 ~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 355 VQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 999997765543332232 222222 23445677888999998754321 2234689999999888765
Q ss_pred c
Q 003000 635 R 635 (859)
Q Consensus 635 ~ 635 (859)
.
T Consensus 435 g 435 (758)
T PRK11034 435 R 435 (758)
T ss_pred C
Confidence 4
No 72
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.44 E-value=7.5e-13 Score=153.44 Aligned_cols=190 Identities=19% Similarity=0.277 Sum_probs=132.1
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchhhhcccch-hhhhHHHHHHhcCCcEEEhhhhHhhhhc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~-~l~~lfe~a~~~~p~Il~iDEId~l~~~ 500 (859)
++++|+||+|+|||+|+++++.++ +..++++++.++...+...... ....+.+..+ .+++|+|||++.+...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 459999999999999999999987 4557788888776554432211 1122323322 4779999999988543
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC---CCccCCCCCccc--ccccCCCCCHHHHHHHHHHH
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 575 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~---LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~ 575 (859)
. . ....|+..++.+...+..+||+++..|.. +++.+.+ ||. .++.|++|+.++|..|++..
T Consensus 227 ~---------~---~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 E---------R---TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred H---------H---HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 1 1 22333443443333444566666666654 6788887 885 57899999999999999998
Q ss_pred HccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 576 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 576 l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
+...++. ++..+..||....| +.+.|..+++.....+...++ .||.+.+.+++....
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~~~ 350 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTGK-PITLELAKEALKDLL 350 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHhh
Confidence 8765443 33346677777654 788888999888777766554 599999999998753
No 73
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.44 E-value=1.5e-12 Score=153.42 Aligned_cols=215 Identities=27% Similarity=0.312 Sum_probs=146.2
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEE
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFS 456 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~ 456 (859)
.....|+++.|....+..+..... ...+.+++|+||||||||++|+++...+ +.+|+.
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 345678888888877766654321 1124569999999999999999997532 357888
Q ss_pred eecccc--ch-----hhhcccch-------hh--hh----HHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHH
Q 003000 457 ISASQF--VE-----IYVGVGAS-------RV--RS----LYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATL 516 (859)
Q Consensus 457 is~s~~--~~-----~~~g~~~~-------~l--~~----lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l 516 (859)
++++.. .. ..++.... .+ .. -.........+++||||++.+... .+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~--------------~q 192 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV--------------QM 192 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH--------------HH
Confidence 887531 11 11110000 00 00 000122334579999999998765 66
Q ss_pred HHHHHhhcccc--------------------------CCCCeEEE-eccCCCCCCCccCCCCCcccccccCCCCCHHHHH
Q 003000 517 NQLLVCLDGFE--------------------------GRGNVITI-ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 569 (859)
Q Consensus 517 ~~LL~~ld~~~--------------------------~~~~vlVI-atTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~ 569 (859)
+.|+..|+... -..++.+| +|||.++.++|++++ |+. .|.|++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHH
Confidence 77776664310 01234455 677889999999998 774 7889999999999
Q ss_pred HHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003000 570 EILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 570 ~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~ 632 (859)
.|++..+++..+. ++..+..++..+ ++++++.++++.|+..|..+++..|+.+|+..++..
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 9999998776543 223345566655 378999999999998888888889999999999753
No 74
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.43 E-value=1.2e-12 Score=149.69 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=140.4
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchhhhcccc-hhhhhHHHHHHhcCCcEEEhhhhHhhhhc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~-~~l~~lfe~a~~~~p~Il~iDEId~l~~~ 500 (859)
..++|+||+|+|||+|++++++++ +..++++++.++...+..... ..+..+.+..+ .+++|+|||++.+...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 458999999999999999999877 466788888776654432211 11222223332 3679999999987543
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC---CCccCCCCCccc--ccccCCCCCHHHHHHHHHHH
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 575 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~---LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~ 575 (859)
. . ....|+..++.....+..+||++++.|.. +++.+.+ ||. ..+.|++|+.++|..|++..
T Consensus 215 ~---------~---~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 215 E---------R---TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred H---------H---HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 1 22233333433333344566666666654 6688887 885 47999999999999999999
Q ss_pred HccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccccccccchhhhHHHHH
Q 003000 576 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 654 (859)
Q Consensus 576 l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g~~~~~~~~~e~~~~vA~h 654 (859)
+...++. ++..+..||.... -+.++|..+++.....|...+ ..||.+.+.+++...... ..+.+..+
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~~----------~~~~it~~ 348 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLRA----------KKKEITIE 348 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhccc----------cCCCCCHH
Confidence 8766544 3334667787765 477889999998877776555 469999999998754322 11235566
Q ss_pred HHHHHHHHHh
Q 003000 655 EAAMAVVAVN 664 (859)
Q Consensus 655 EAGHAvva~l 664 (859)
++-++|..++
T Consensus 349 ~I~~~Va~~~ 358 (405)
T TIGR00362 349 NIQEVVAKYY 358 (405)
T ss_pred HHHHHHHHHc
Confidence 6666666544
No 75
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.5e-12 Score=153.90 Aligned_cols=210 Identities=19% Similarity=0.225 Sum_probs=143.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEE--Eeecc---
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF--SISAS--- 460 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~--~is~s--- 460 (859)
+....+|+++.|.+.++..+.+.+. +-+++..+||+||+||||||++++||+.++.... ...|+
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 3456789999999888877766543 1234566899999999999999999998754211 00111
Q ss_pred -----------ccchh--hhcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhh
Q 003000 461 -----------QFVEI--YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 523 (859)
Q Consensus 461 -----------~~~~~--~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~l 523 (859)
++.+. ....+...++.+++.+.. ....|+||||+|.+... .+|.||..|
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~--------------A~NALLKtL 143 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH--------------AFNAMLKTL 143 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH--------------HHHHHHHHH
Confidence 00000 001112334556655442 23579999999998643 678899988
Q ss_pred ccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHH
Q 003000 524 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 602 (859)
Q Consensus 524 d~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL 602 (859)
+ ....++.||++||.++.|.+.|++ |+ ..+.|..++.++....|+..+...++. ++..+..|++.+.|- .++.
T Consensus 144 E--EPP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mRdA 217 (830)
T PRK07003 144 E--EPPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MRDA 217 (830)
T ss_pred H--hcCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHH
Confidence 8 445688999999999999999999 66 588999999999999998888665543 334467778888774 5556
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 603 ANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 603 ~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
.+++..+... +...|+.+++...+
T Consensus 218 LsLLdQAia~----~~~~It~~~V~~~L 241 (830)
T PRK07003 218 LSLTDQAIAY----SANEVTETAVSGML 241 (830)
T ss_pred HHHHHHHHHh----ccCCcCHHHHHHHh
Confidence 5777766532 22347777666544
No 76
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.7e-12 Score=144.76 Aligned_cols=210 Identities=19% Similarity=0.227 Sum_probs=141.6
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEe--------e
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI--------S 458 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~i--------s 458 (859)
.....|+++.|.+..+..+.+++.. -++|..++|+||+|+||||+|+++|..+....... +
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3457889999988888776655531 13456689999999999999999999875321100 0
Q ss_pred cccc-----chhh-hc----ccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhc
Q 003000 459 ASQF-----VEIY-VG----VGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 524 (859)
Q Consensus 459 ~s~~-----~~~~-~g----~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld 524 (859)
|.++ ...+ +. .....++.+.+.+... ...|++|||+|.+... .++.|+..++
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~--------------a~naLLk~lE 144 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH--------------SFNALLKTLE 144 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH--------------HHHHHHHHHh
Confidence 0000 0000 00 1122345555544322 2459999999988543 6778888888
Q ss_pred cccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHH
Q 003000 525 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 603 (859)
Q Consensus 525 ~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~ 603 (859)
. ...++.+|.+|+.++.+.+.+.+ |+ ..+.|++|+.++...++...+...+.. ++..+..++..+.| +++++.
T Consensus 145 e--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al 218 (363)
T PRK14961 145 E--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDAL 218 (363)
T ss_pred c--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 44567777777778889989987 66 578999999999999999887765532 33446667777765 677777
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 604 NIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 604 ~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
++++.+... +...|+.+++.+++.
T Consensus 219 ~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 219 NLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 777766532 455799999888763
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=2.9e-12 Score=149.02 Aligned_cols=214 Identities=19% Similarity=0.273 Sum_probs=148.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEe--------
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI-------- 457 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~i-------- 457 (859)
+.....|.++.|....+..+.+++.. -+++.+++|+||+||||||+|+++|..++......
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 34567888999988888776664431 24467799999999999999999999875421100
Q ss_pred ----eccccchh------hh----cccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHH
Q 003000 458 ----SASQFVEI------YV----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 519 (859)
Q Consensus 458 ----s~s~~~~~------~~----g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~L 519 (859)
+|..+... .+ ..+...++.+++.+... ...|++|||++.+... .++.|
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~--------------a~naL 148 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG--------------AFNAL 148 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH--------------HHHHH
Confidence 01011000 00 11223456666666533 3469999999987543 67888
Q ss_pred HHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCC
Q 003000 520 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMV 598 (859)
Q Consensus 520 L~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~t~G~s 598 (859)
+..|+ ....++++|.+|+.++.+.+.+.+ |+ ..+.|.+++.++...+++..+...+..-+ ..+..++..+.| +
T Consensus 149 Lk~LE--epp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-s 222 (507)
T PRK06645 149 LKTLE--EPPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-S 222 (507)
T ss_pred HHHHh--hcCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888 455678888888888899999988 66 47889999999999999998876655433 346678887766 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 599 GAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 599 gadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
.+++.++++.+...+... ...||.+++.+.+.
T Consensus 223 lR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 223 ARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred HHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 888888888876554221 23589888887653
No 78
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.41 E-value=8.3e-12 Score=143.19 Aligned_cols=199 Identities=27% Similarity=0.389 Sum_probs=136.3
Q ss_pred cccccCccCchHHHHH---HHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh
Q 003000 389 DVKFSDVAGLGKIRLE---LEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 465 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~---l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 465 (859)
...|+++.|....+.. +..++. . ..+.+++|+|||||||||||++|+..++.++..+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~---~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIE---A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHH---c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 4567777777766544 333332 1 123468999999999999999999999999988887532
Q ss_pred hhcccchhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc--C
Q 003000 466 YVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--N 539 (859)
Q Consensus 466 ~~g~~~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT--N 539 (859)
+...++.+++.+. .....++||||++.+... ..+.|+..++ ...+++|++| |
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~--------------~q~~LL~~le----~~~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA--------------QQDALLPHVE----DGTITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH--------------HHHHHHHHhh----cCcEEEEEeCCCC
Confidence 1233445555543 225679999999988543 4556666665 2456666554 4
Q ss_pred CCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC--CC--CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 003000 540 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--PM--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615 (859)
Q Consensus 540 ~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~--~~--~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~ 615 (859)
....+++++++ |+ ..+.|++|+.++...+++..+... .+ ..+..+..++..+.| ..+.+.++++.+...
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~--- 203 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG--- 203 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc---
Confidence 45578999998 77 688999999999999999876542 11 122335677777754 555666777666533
Q ss_pred hCCCccCHHHHHHHHHHH
Q 003000 616 DGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 616 ~~~~~It~edl~~Al~~~ 633 (859)
...|+.+++..++...
T Consensus 204 --~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 204 --VDSITLELLEEALQKR 219 (413)
T ss_pred --cCCCCHHHHHHHHhhh
Confidence 4469999999998764
No 79
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=9.4e-12 Score=140.10 Aligned_cols=195 Identities=24% Similarity=0.298 Sum_probs=129.5
Q ss_pred cCceEEEECCCCCCchhHHHhhhhccc---------ccEEEeeccccchh----------hh--ccc--------chhhh
Q 003000 425 IPGGILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEI----------YV--GVG--------ASRVR 475 (859)
Q Consensus 425 ~~~gvLL~GPpGtGKTtLakaLA~el~---------~~~~~is~s~~~~~----------~~--g~~--------~~~l~ 475 (859)
.+.+++|+||||||||++++.++..+. ..++++++...... .. +.. ...+.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 118 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFR 118 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHH
Confidence 345699999999999999999998652 46778887653321 10 110 01123
Q ss_pred hHHHHHHh-cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc-ccCCCCeEEEeccCCCC---CCCccCCC
Q 003000 476 SLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-FEGRGNVITIASTNRPD---ILDPALVR 550 (859)
Q Consensus 476 ~lfe~a~~-~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~-~~~~~~vlVIatTN~~~---~LdpaLlr 550 (859)
.+++.... ..+.|++|||+|.+.... ...+..|+...+. ...+.++.+|+++|.++ .+++.+.+
T Consensus 119 ~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s 187 (365)
T TIGR02928 119 RLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS 187 (365)
T ss_pred HHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc
Confidence 34444432 346789999999996221 0145555543211 12336788899998886 47788877
Q ss_pred CCccc-ccccCCCCCHHHHHHHHHHHHccC----CCCCcc-c-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 551 PGRFD-RKIFIPKPGLIGRMEILKVHARKK----PMADDV-D-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 551 pgRfd-~~I~~~~Pd~~eR~~Il~~~l~~~----~~~~d~-d-l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
||. ..|.|++++.++..+|++.++... .+.+++ + +..++..+.|... .+.++++.|...|..++...|+.
T Consensus 188 --~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R-~al~~l~~a~~~a~~~~~~~it~ 264 (365)
T TIGR02928 188 --SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDAR-KAIDLLRVAGEIAEREGAERVTE 264 (365)
T ss_pred --cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHcCCCCCCH
Confidence 774 679999999999999999888521 122221 1 2334455556544 44578889998888888889999
Q ss_pred HHHHHHHHHH
Q 003000 624 DDLLQAAQIE 633 (859)
Q Consensus 624 edl~~Al~~~ 633 (859)
+|+..|+...
T Consensus 265 ~~v~~a~~~~ 274 (365)
T TIGR02928 265 DHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHH
Confidence 9999998866
No 80
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=3.2e-12 Score=149.92 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=144.3
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-------------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 453 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------- 453 (859)
.....|+++.|.+.++..+.+.+. +-+++..+||+||+|+||||+|+++|+.++..
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 456789999999888777766654 12445678999999999999999999987542
Q ss_pred -----------EEEeeccccchhhhcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHH
Q 003000 454 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 518 (859)
Q Consensus 454 -----------~~~is~s~~~~~~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~ 518 (859)
++.++.++ ..+...++.+.+.+.. ..+.|++|||+|.+... .++.
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--------------A~NA 137 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--------------SFNA 137 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH--------------HHHH
Confidence 22222211 0112334555554432 33569999999988644 6788
Q ss_pred HHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 003000 519 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 597 (859)
Q Consensus 519 LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~ 597 (859)
|+..|+. ...++.+|++|+.+..+.+.+++ |+ ..+.|.+++..+....+...+...++. ++..+..|+..+.|
T Consensus 138 LLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 138 LLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888884 44677788788888888888887 66 488999999999999998888765544 33346677777765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
+.+++.+++..+... +...|+.+++...+.
T Consensus 212 dLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 212 SLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 777777887766532 445699988877643
No 81
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=3.5e-12 Score=149.06 Aligned_cols=204 Identities=16% Similarity=0.212 Sum_probs=145.4
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-------------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 453 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------- 453 (859)
.....|+++.|...++..+.+.+.. -+++..+||+||+|+||||+|+++|+.+...
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 4567899999999988877776642 2345678999999999999999999987542
Q ss_pred -----------EEEeeccccchhhhcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHH
Q 003000 454 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 518 (859)
Q Consensus 454 -----------~~~is~s~~~~~~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~ 518 (859)
+++++.+. ..+...++.+.+.+.. ....|++|||+|.+... .++.
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--------------a~na 138 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--------------SFNA 138 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH--------------HHHH
Confidence 22222211 1122334555555432 23469999999998654 6888
Q ss_pred HHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 003000 519 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 597 (859)
Q Consensus 519 LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~ 597 (859)
|+..|+. ...++.+|.+|+.+..+.+.+++ |+ ..+.|.+++..+....+...+...++. ++..+..++..+.|
T Consensus 139 LLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 139 LLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999984 45678888788888888888888 65 578899999998888888777665543 33346677777754
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
+.+++.+++..+... +...||.+++...+.
T Consensus 213 slR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 213 SVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 778888888876432 345689988887653
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=5.8e-12 Score=149.48 Aligned_cols=208 Identities=20% Similarity=0.289 Sum_probs=141.4
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEE--eeccc----
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ---- 461 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~--is~s~---- 461 (859)
....|+++.|.+.++..+.+.+.. -+++..+||+||+|+||||+|+++|..+....+. ..|+.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 457899999988888776655542 1345668999999999999999999987553110 01110
Q ss_pred --c-----chhh-hc----ccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc
Q 003000 462 --F-----VEIY-VG----VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 525 (859)
Q Consensus 462 --~-----~~~~-~g----~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~ 525 (859)
+ .+.+ +. .+...++.+.+.+.. ....|++|||+|.+... .+|.||..|+
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--------------a~NALLKtLE- 144 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNALLKTLE- 144 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH--------------HHHHHHHHHH-
Confidence 0 0000 00 112334555555432 34569999999998654 7899999999
Q ss_pred ccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHH
Q 003000 526 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 604 (859)
Q Consensus 526 ~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~ 604 (859)
....+++||.+|+.+..|.+.+++ |+ ..+.|.+++.++....+...+...++. ++..+..|+..+.| +.++..+
T Consensus 145 -EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~ 219 (647)
T PRK07994 145 -EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALS 219 (647)
T ss_pred -cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 456788888888889999999998 65 689999999999999998887654443 33445677777766 5566667
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 605 IVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 605 Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
++..+... +...|+.+++...+
T Consensus 220 lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 220 LTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHh----cCCCcCHHHHHHHH
Confidence 77766422 23347777766554
No 83
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.37 E-value=4.7e-12 Score=136.28 Aligned_cols=208 Identities=24% Similarity=0.393 Sum_probs=137.8
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc---EEEeeccccch
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVE 464 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~---~~~is~s~~~~ 464 (859)
....+++..|....+-. +.++..+-.. .--.+++|+|||||||||||+.|+.....+ |++++...
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq--------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--- 200 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQ--------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--- 200 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHc--------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc---
Confidence 45567777776555432 4444332211 112358999999999999999999988665 55555432
Q ss_pred hhhcccchhhhhHHHHHHh-----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc-
Q 003000 465 IYVGVGASRVRSLYQEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST- 538 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~-----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT- 538 (859)
.....++.+|+.+.+ ..-.|+|||||+.+... ....||-.++ ++.|++|++|
T Consensus 201 ----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks--------------QQD~fLP~VE----~G~I~lIGATT 258 (554)
T KOG2028|consen 201 ----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------------QQDTFLPHVE----NGDITLIGATT 258 (554)
T ss_pred ----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh--------------hhhcccceec----cCceEEEeccc
Confidence 223456788888764 33569999999998654 4455554443 5778889655
Q ss_pred -CCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHc---cC-----CCC------CcccHHHHHhhCCCCCHHHHH
Q 003000 539 -NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR---KK-----PMA------DDVDYLAVASMTDGMVGAELA 603 (859)
Q Consensus 539 -N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~---~~-----~~~------~d~dl~~lA~~t~G~sgadL~ 603 (859)
|..-.++.+|++++| ++.+...+.+....||..-+. +- ++. ++--++.++..++|-..+.|
T Consensus 259 ENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL- 334 (554)
T KOG2028|consen 259 ENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL- 334 (554)
T ss_pred CCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH-
Confidence 666679999999553 677888888888888886432 11 111 22236778999999888887
Q ss_pred HHHHHHHHH-HHHhC---CCccCHHHHHHHHHHH
Q 003000 604 NIVEVAAIN-MMRDG---RTEITTDDLLQAAQIE 633 (859)
Q Consensus 604 ~Lv~~A~~~-A~~~~---~~~It~edl~~Al~~~ 633 (859)
|.++.++.. ..+.| +..++.+|+.+.+.+.
T Consensus 335 N~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 335 NALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 455555333 33333 3479999999998754
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=7e-12 Score=144.86 Aligned_cols=203 Identities=22% Similarity=0.259 Sum_probs=146.4
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc--------------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------- 452 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-------------- 452 (859)
....+|+++.|.+..+..+.++... -++|.++||+||+|+||||+|+.+|..+..
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 4567899999988887766655431 245678999999999999999999986532
Q ss_pred ----------cEEEeeccccchhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHH
Q 003000 453 ----------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 518 (859)
Q Consensus 453 ----------~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~ 518 (859)
+++.++.++ ..+...++.+.+.+... .+.|++|||++.+... .++.
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~--------------A~Na 135 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS--------------AFNA 135 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH--------------HHHH
Confidence 223333321 11223456666666433 3569999999888543 7889
Q ss_pred HHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 003000 519 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 597 (859)
Q Consensus 519 LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~ 597 (859)
|+..|+ .+..++++|.+|+.++.+.+.+++ |+ ..+.|.+++.++....+...+...+.. ++..+..|+..+.|
T Consensus 136 LLK~LE--ePp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 136 LLKTLE--EPAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHHHHh--CCCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 999998 455678888888888889999988 65 468999999999999999888765543 33446677777754
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.+++.++++.+.... + ..||.+++...+
T Consensus 210 slR~alslLdqli~y~---~-~~It~e~V~~ll 238 (491)
T PRK14964 210 SMRNALFLLEQAAIYS---N-NKISEKSVRDLL 238 (491)
T ss_pred CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHH
Confidence 7788888888776432 2 369999988765
No 85
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.36 E-value=1e-11 Score=141.43 Aligned_cols=186 Identities=25% Similarity=0.307 Sum_probs=117.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch-hhhcccchhh-hhHHHH----HHhcCCcEEEhhhhHhhhhc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASRV-RSLYQE----AKDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~-~~~g~~~~~l-~~lfe~----a~~~~p~Il~iDEId~l~~~ 500 (859)
.+++|+||||||||++|++||..++.+|+.++++.+.. .|+|.....+ ..+++. .....++||||||||.+...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 45999999999999999999999999999999988764 4777654432 333332 22346789999999999765
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCC---------------------------
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD--------------------------- 542 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~--------------------------- 542 (859)
....+....-....+++.||..|++.. +..++++|.|+|...
T Consensus 189 ~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~ 268 (412)
T PRK05342 189 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAE 268 (412)
T ss_pred cCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccc
Confidence 221111000111236777888887521 112345555555410
Q ss_pred -------------------------CCCccCCCCCcccccccCCCCCHHHHHHHHHH----HHc-------cCCCC---C
Q 003000 543 -------------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKV----HAR-------KKPMA---D 583 (859)
Q Consensus 543 -------------------------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~----~l~-------~~~~~---~ 583 (859)
.+.|+|+. |+|.++.|.+++.+++.+|+.. .++ ...+. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t 346 (412)
T PRK05342 269 VKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFT 346 (412)
T ss_pred cccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEC
Confidence 03567766 9999999999999999999973 221 11221 1
Q ss_pred cccHHHHHhh--CCCCCHHHHHHHHHHHHHHHH
Q 003000 584 DVDYLAVASM--TDGMVGAELANIVEVAAINMM 614 (859)
Q Consensus 584 d~dl~~lA~~--t~G~sgadL~~Lv~~A~~~A~ 614 (859)
+.-+..|+.. ..++-.+.|..+++....-..
T Consensus 347 ~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 347 DEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 2224455543 445556777777666554443
No 86
>PRK04195 replication factor C large subunit; Provisional
Probab=99.36 E-value=9.5e-12 Score=145.42 Aligned_cols=210 Identities=23% Similarity=0.299 Sum_probs=142.7
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
.++.....|+++.|....+..+...+..+.. -.++++++|+|||||||||+|++||++++.+++.++.++..
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 3455667788999999988888877765431 12366799999999999999999999999999999887643
Q ss_pred hhhhcccchhhhhHHHHHHh------cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEec
Q 003000 464 EIYVGVGASRVRSLYQEAKD------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS 537 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~------~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIat 537 (859)
.. ..+..+...+.. ..+.+|+|||+|.+.... .+..+..|+..++ ..+..||++
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~----~~~~~iIli 136 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIK----KAKQPIILT 136 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHH----cCCCCEEEe
Confidence 21 111222222111 246799999999885421 0113455555555 233456667
Q ss_pred cCCCCCCCc-cCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 003000 538 TNRPDILDP-ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615 (859)
Q Consensus 538 TN~~~~Ldp-aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~ 615 (859)
+|.+..+++ .+.+ | ...|.|++|+..++..+++..+...++. ++..+..|+..+.| |++.+++..... .
T Consensus 137 ~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~--a 207 (482)
T PRK04195 137 ANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAI--A 207 (482)
T ss_pred ccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH--h
Confidence 888888777 5544 3 3589999999999999999888665443 33446777877755 666676665543 3
Q ss_pred hCCCccCHHHHHHHH
Q 003000 616 DGRTEITTDDLLQAA 630 (859)
Q Consensus 616 ~~~~~It~edl~~Al 630 (859)
.+...|+.+++....
T Consensus 208 ~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 EGYGKLTLEDVKTLG 222 (482)
T ss_pred cCCCCCcHHHHHHhh
Confidence 455578988887653
No 87
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=5.9e-12 Score=145.18 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=129.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchhhhcccc-hhhhhHHHHHHhcCCcEEEhhhhHhhhhc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~-~~l~~lfe~a~~~~p~Il~iDEId~l~~~ 500 (859)
.+++|+||+|+|||+|++++++++ +..+.++++.++...+..... ..+.. |.......+++++|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 459999999999999999999976 346778888877655432211 11222 22222235789999999987543
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC---CCccCCCCCcc--cccccCCCCCHHHHHHHHHHH
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRF--DRKIFIPKPGLIGRMEILKVH 575 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~---LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~ 575 (859)
. . ....|+..++.+...+..+||++.+.|.. +.+.+.+ || +.++.|++|+.+.|..|++..
T Consensus 210 ~---------~---~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 T---------G---VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred H---------H---HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1 0 12223333333333445566666666654 5667877 66 467889999999999999988
Q ss_pred HccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 576 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 576 l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
+...++. ++..+..||....| +.++|..+++.....+...++ .||.+.+.+++....
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~~-~it~~~a~~~L~~~~ 333 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGE-EVDLKEAILLLKDFI 333 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 8654333 23336677777764 788898998887766666554 599999999987653
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=7.5e-12 Score=148.02 Aligned_cols=211 Identities=18% Similarity=0.240 Sum_probs=146.1
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEE--eecc---
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISAS--- 460 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~--is~s--- 460 (859)
+.....|+++.|...++..+.+.+.. -+++.++||+||+|+||||+|+++|+.+...... ..|+
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 34567899999999888777776552 2456779999999999999999999987543110 0011
Q ss_pred --------ccchh-----hhcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhh
Q 003000 461 --------QFVEI-----YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 523 (859)
Q Consensus 461 --------~~~~~-----~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~l 523 (859)
.+... ....+...++.+++.+.. ....|++|||++.+... .++.||..|
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~--------------A~NALLKtL 143 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS--------------AFNAMLKTL 143 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH--------------HHHHHHHHH
Confidence 11000 001122345666655432 23469999999877433 678899888
Q ss_pred ccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHH
Q 003000 524 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 602 (859)
Q Consensus 524 d~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL 602 (859)
+. ...++.+|++||.+..+.+.+++ |+ ..+.|++++.++....+...+...++. ++..+..|+..+. .+.+++
T Consensus 144 EE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdA 217 (709)
T PRK08691 144 EE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDA 217 (709)
T ss_pred Hh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHH
Confidence 84 44677888888889999988887 66 478888999999999999888766554 2334667777775 577888
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 603 ANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 603 ~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
.++++.+... +...|+.+++...+.
T Consensus 218 lnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 218 LSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 8888877643 344688888877654
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.1e-11 Score=146.90 Aligned_cols=209 Identities=17% Similarity=0.201 Sum_probs=142.7
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc------------E
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------F 454 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------~ 454 (859)
.....|+++.|.+.++..+.+++.. -+++..+||+||+|+||||+++++|+.+... .
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 3557899999988888777665542 2345668999999999999999999877531 0
Q ss_pred EEe-eccc--------cchh--hhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHH
Q 003000 455 FSI-SASQ--------FVEI--YVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 519 (859)
Q Consensus 455 ~~i-s~s~--------~~~~--~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~L 519 (859)
+.+ +|.. +... ....+...++.+.+.+... ...|++|||+|.+... .++.|
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~--------------a~NaL 144 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT--------------AFNAM 144 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH--------------HHHHH
Confidence 000 0000 0000 0011223455666655432 2469999999998654 68889
Q ss_pred HHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHhhCCCCC
Q 003000 520 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMV 598 (859)
Q Consensus 520 L~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~-d~dl~~lA~~t~G~s 598 (859)
+..|+. ...++++|.+|+.+..+.+.+++ |+ ..+.|..++.++....++..+...++.- +..+..|+..+.| +
T Consensus 145 LKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-s 218 (618)
T PRK14951 145 LKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-S 218 (618)
T ss_pred HHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 988884 45677888788888888888888 55 5889999999999999988877655543 3346777877765 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 599 GAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 599 gadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
.+++.+++..+... +...||.+++...+
T Consensus 219 lR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 219 MRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 77777877665533 34468888777654
No 90
>PRK06893 DNA replication initiation factor; Validated
Probab=99.35 E-value=1.1e-11 Score=131.19 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=116.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 503 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~ 503 (859)
+.++|+||||||||+|+.++|+++ +....+++....... ...+++.. ...++++|||++.+....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~~--~~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF--------SPAVLENL--EQQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--------hHHHHhhc--ccCCEEEEeChhhhcCCh--
Confidence 348999999999999999999876 334445554321110 01233333 245799999999875331
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCC-eEEEeccCCCCCCC---ccCCCCCcccccccCCCCCHHHHHHHHHHHHccC
Q 003000 504 IKGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDILD---PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK 579 (859)
Q Consensus 504 ~~~sgge~~r~~l~~LL~~ld~~~~~~~-vlVIatTN~~~~Ld---paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~ 579 (859)
.....+..+ ++.....++ ++|++++..|..++ |.+.++.+++..+.+++|+.+++..|++..+...
T Consensus 108 -------~~~~~l~~l---~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 -------EWELAIFDL---FNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHHHHHHHH---HHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 111223333 333333333 44556666676554 8898866667899999999999999999887655
Q ss_pred CCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 580 PMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 580 ~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
.+. ++.-+..|+....| +.+.+.++++.....+...++ .||...+.+++
T Consensus 178 ~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~~-~it~~~v~~~L 227 (229)
T PRK06893 178 GIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQR-KLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHh
Confidence 443 33335667777764 667777777765433443344 69999988875
No 91
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.35 E-value=8.7e-11 Score=140.60 Aligned_cols=214 Identities=26% Similarity=0.304 Sum_probs=130.1
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEee
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 458 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is 458 (859)
...|+++.|....+..+...+. ...+..++|+|||||||||+|+++.+.. +.+++.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 4567788887776654432221 1124569999999999999999998755 34678888
Q ss_pred ccccch-------hhhcccchhh----hhHHH----------HHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 459 ASQFVE-------IYVGVGASRV----RSLYQ----------EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 459 ~s~~~~-------~~~g~~~~~l----~~lfe----------~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
+..+.. ..++...... ...+. .......+++||||++.+... ...
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q~ 283 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------------LQN 283 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------------HHH
Confidence 765420 1122111000 00000 011234569999999877543 344
Q ss_pred HHHHhhccc--------------------------cCCCCeEEE-eccCCCCCCCccCCCCCcccccccCCCCCHHHHHH
Q 003000 518 QLLVCLDGF--------------------------EGRGNVITI-ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 570 (859)
Q Consensus 518 ~LL~~ld~~--------------------------~~~~~vlVI-atTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~ 570 (859)
.|+..|+.. ....++++| +||+.++.++++|++ ||. .+.|++++.+++..
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 444444321 012235666 456778889999987 886 57899999999999
Q ss_pred HHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHHH
Q 003000 571 ILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD--------GRTEITTDDLLQAAQIE 633 (859)
Q Consensus 571 Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~--------~~~~It~edl~~Al~~~ 633 (859)
|++..+...... .+.-+..|+..+. .++...+++..+...+..+ +...|+.+|+.+++...
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 999988765432 2223445555543 4555556666665443221 23369999999997643
No 92
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.1e-11 Score=149.15 Aligned_cols=209 Identities=18% Similarity=0.207 Sum_probs=140.8
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEE-E-eecc----
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-S-ISAS---- 460 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~-~-is~s---- 460 (859)
.....|+++.|...++..+.+++.. -+++..+||+||+||||||+|+++|+.+..... . ..|+
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 3557899999998888777665542 134566899999999999999999998865311 0 0010
Q ss_pred --ccchh------hh-c---ccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhc
Q 003000 461 --QFVEI------YV-G---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 524 (859)
Q Consensus 461 --~~~~~------~~-g---~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld 524 (859)
.+... .+ + .+...++.+.+.+.. ....|+||||++.+... .++.||..|+
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e--------------AqNALLKtLE 144 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS--------------SFNALLKTLE 144 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH--------------HHHHHHHHHh
Confidence 00000 01 0 112234555555432 33469999999998654 8899999999
Q ss_pred cccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHH
Q 003000 525 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 603 (859)
Q Consensus 525 ~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~ 603 (859)
....++.+|++|+.+..|.+.|++ |+ .++.|.+++.++....++..+....+. .+..+..|+..+.| +.+++.
T Consensus 145 --EPP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~AL 218 (944)
T PRK14949 145 --EPPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDAL 218 (944)
T ss_pred --ccCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 455677788778888889899998 65 578999999999999998877654433 22346667777765 566666
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 604 NIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 604 ~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+++..+.. . +...++.+.+...+
T Consensus 219 nLLdQala--~--~~~~It~~~V~~ll 241 (944)
T PRK14949 219 SLTDQAIA--F--GGGQVMLTQVQTML 241 (944)
T ss_pred HHHHHHHH--h--cCCcccHHHHHHHh
Confidence 88877662 2 33357766665543
No 93
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=1.5e-11 Score=139.94 Aligned_cols=196 Identities=22% Similarity=0.299 Sum_probs=130.6
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchh----------hhcc----cchhh----hhHHHHHH
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----------YVGV----GASRV----RSLYQEAK 482 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~----------~~g~----~~~~l----~~lfe~a~ 482 (859)
+.+++|+||||+|||++++.++..+ +..++++++...... ..+. ..... ..+.+...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999876 466888887653321 1110 00011 22223322
Q ss_pred h-cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC---CCCccCCCCCcc-ccc
Q 003000 483 D-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF-DRK 557 (859)
Q Consensus 483 ~-~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~---~LdpaLlrpgRf-d~~ 557 (859)
. ..+.||+|||+|.+..... ...+..|+..++... ..++.+|+++|..+ .+++.+.+ || ...
T Consensus 135 ~~~~~~viviDE~d~l~~~~~----------~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKEG----------NDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccCC----------chHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 3457899999999862110 125666666555433 34787888887664 46777765 55 357
Q ss_pred ccCCCCCHHHHHHHHHHHHccCC---CCCcccHHHHHhhCCC--CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003000 558 IFIPKPGLIGRMEILKVHARKKP---MADDVDYLAVASMTDG--MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 558 I~~~~Pd~~eR~~Il~~~l~~~~---~~~d~dl~~lA~~t~G--~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~ 632 (859)
|.|++++.++..+|++.++.... ..++..+..++..+.+ ...+.+.+++..|...|..++...|+.+|+..|+..
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 89999999999999998875421 1223335556666633 234555588888888888888889999999999987
Q ss_pred HH
Q 003000 633 EE 634 (859)
Q Consensus 633 ~~ 634 (859)
..
T Consensus 282 ~~ 283 (394)
T PRK00411 282 SE 283 (394)
T ss_pred HH
Confidence 63
No 94
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.33 E-value=6.8e-12 Score=141.61 Aligned_cols=240 Identities=18% Similarity=0.193 Sum_probs=165.1
Q ss_pred hhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhh
Q 003000 284 DSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAM 363 (859)
Q Consensus 284 ~~~~i~~l~~~~~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v 363 (859)
.++.|..+ ....+.+|.|||+.|...+. +......++++.+++++...+..+...-..-+ ...+++.
T Consensus 285 vCT~Ii~l-~~kkl~~y~Gnydqy~~tr~--E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a----------~~~rka~ 351 (614)
T KOG0927|consen 285 VCTNIIHL-DNKKLIYYEGNYDQYVKTRS--ELEENQMKAYEKQQKQIAHMKDLIARFGHGSA----------KLGRKAQ 351 (614)
T ss_pred Hhhhhhee-cccceeeecCCHHHHhhHHH--HHhHHHHHHHHHHHhHHHHhhHHHHhhcccch----------hhhHHHh
Confidence 35667777 77779999999999999888 77888888899999999999988875542111 1112222
Q ss_pred chhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhcc-cchhhhccCCccCc--eEEEECCCCCCch
Q 003000 364 QFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFT-HGEMYRRRGVRIPG--GILLCGPPGVGKT 440 (859)
Q Consensus 364 ~~~~i~~~vs~~tgip~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~-~~~~~~~~gl~~~~--gvLL~GPpGtGKT 440 (859)
...+....+. ..|.......+....+.|.+.+.++..++...++.+.|. ++.+|.++.+.+.. .+.++||||+|||
T Consensus 352 s~~K~~~km~-~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKs 430 (614)
T KOG0927|consen 352 SKEKTLDKME-ADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKS 430 (614)
T ss_pred hhhhhHHHHh-hccccccccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchh
Confidence 2222222221 122223334455677889999888888888899888776 34677776665554 4999999999999
Q ss_pred hHHHhhhhcccccEEEeeccccchh-hhcccchhh----hhHHHHHHhcCCcEEEhhhhHhhhhccCCcCC---------
Q 003000 441 LLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV----RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG--------- 506 (859)
Q Consensus 441 tLakaLA~el~~~~~~is~s~~~~~-~~g~~~~~l----~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~--------- 506 (859)
||+|.+.+.+.+..|.++...-... ++.+..... ....+.....-|..-=++++..+++..++.+.
T Consensus 431 TLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~L 510 (614)
T KOG0927|consen 431 TLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQL 510 (614)
T ss_pred hhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhc
Confidence 9999999999998888876543322 222221110 12233333333434557788888877666543
Q ss_pred CCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCCC
Q 003000 507 SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 543 (859)
Q Consensus 507 sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~~ 543 (859)
|+|++.+.+++.++ ...++++|+ .+||+.|.
T Consensus 511 S~Gqr~rVlFa~l~------~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 511 SDGQRRRVLFARLA------VKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred ccccchhHHHHHHH------hcCCcEEEecCCCcCCCc
Confidence 89999999999998 667888888 99999874
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.7e-11 Score=145.04 Aligned_cols=203 Identities=25% Similarity=0.333 Sum_probs=144.7
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc--------------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------- 452 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-------------- 452 (859)
....+|+++.|.+..+..+.+.+.. .+++..+||+||+|||||++|+.+|..+..
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 3567899999999888777776553 134566899999999999999999987642
Q ss_pred ----------cEEEeeccccchhhhcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHH
Q 003000 453 ----------NFFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 518 (859)
Q Consensus 453 ----------~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~ 518 (859)
+++.++.+. +.+...++.+.+.+.. ..+.|++|||++.+... .++.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--------------a~na 138 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--------------AFNA 138 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH--------------HHHH
Confidence 122222211 1122345666666543 23569999999988543 6888
Q ss_pred HHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 003000 519 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 597 (859)
Q Consensus 519 LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~ 597 (859)
|+..++. +..++++|.+|+.++.+.+.+++ |+. .+.|++|+..+....+...+...++. ++..+..++..+.|
T Consensus 139 LLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9988884 45677888778888999999988 664 67899999999999999888766543 23346667777765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.+++.+++..+... +...||.+++..++
T Consensus 213 ~~R~al~~Ldq~~~~----~~~~It~~~V~~vl 241 (559)
T PRK05563 213 GMRDALSILDQAISF----GDGKVTYEDALEVT 241 (559)
T ss_pred CHHHHHHHHHHHHHh----ccCCCCHHHHHHHh
Confidence 777777888776543 23468888877654
No 96
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.33 E-value=7.3e-12 Score=141.98 Aligned_cols=187 Identities=25% Similarity=0.303 Sum_probs=120.4
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch-hhhcccchh-hhhHHHH----HHhcCCcEEEhhhhHhhhhc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASR-VRSLYQE----AKDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~-~~~g~~~~~-l~~lfe~----a~~~~p~Il~iDEId~l~~~ 500 (859)
.++||+||||||||++|++||..++.++..++++.+.. .|+|..... +..+++. +....++||||||+|++...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 45999999999999999999999999999998887653 477765332 2333322 12345789999999999764
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCC---------------------------
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD--------------------------- 542 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~--------------------------- 542 (859)
....+....-....+++.||+.|++.. +..++++|.|+|...
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~ 276 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAE 276 (413)
T ss_pred hccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccc
Confidence 221110000011136777888776532 124577888877610
Q ss_pred -----------------------CCCccCCCCCcccccccCCCCCHHHHHHHHHHH----Hcc-------CCCC---Ccc
Q 003000 543 -----------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH----ARK-------KPMA---DDV 585 (859)
Q Consensus 543 -----------------------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~----l~~-------~~~~---~d~ 585 (859)
.+.|+|+. |+|.++.|.+.+.+++.+|+... ++. .++. .+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~ 354 (413)
T TIGR00382 277 VKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEE 354 (413)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHH
Confidence 03477766 99999999999999999998753 211 1111 112
Q ss_pred cHHHHHhh--CCCCCHHHHHHHHHHHHHHHHH
Q 003000 586 DYLAVASM--TDGMVGAELANIVEVAAINMMR 615 (859)
Q Consensus 586 dl~~lA~~--t~G~sgadL~~Lv~~A~~~A~~ 615 (859)
-+..|+.. ...+-.+-|..+++....-...
T Consensus 355 a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 355 ALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 24455554 4455677777777776655444
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2e-11 Score=143.63 Aligned_cols=209 Identities=18% Similarity=0.210 Sum_probs=141.6
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEE--eeccc----
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ---- 461 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~--is~s~---- 461 (859)
....|+++.|...++..+.+.+.. -+++..++|+||+|+||||+|+++|..+...... -.|+.
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 456889999998888777666542 2345668999999999999999999987542110 01110
Q ss_pred -------cchhh-h----cccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc
Q 003000 462 -------FVEIY-V----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 525 (859)
Q Consensus 462 -------~~~~~-~----g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~ 525 (859)
+...+ + ..+...++.+.+.+... ...|++|||+|.+... .++.||..|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~--------------a~naLLK~LEe 145 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS--------------AFNAMLKTLEE 145 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH--------------HHHHHHHHHhC
Confidence 00000 0 11123345666655432 2469999999987543 67889999984
Q ss_pred ccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHhhCCCCCHHHHHH
Q 003000 526 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELAN 604 (859)
Q Consensus 526 ~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~-d~dl~~lA~~t~G~sgadL~~ 604 (859)
...++++|.+|+.++.+.+.+++ |+ ..+.|.+++.++....+...+...++.. +..+..++..+. .+.+++.+
T Consensus 146 --pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gslr~al~ 219 (527)
T PRK14969 146 --PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSMRDALS 219 (527)
T ss_pred --CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHH
Confidence 45677888777888888888887 65 6899999999999988887776554432 233566677765 46677778
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 605 IVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 605 Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
+++.+... +...|+.+++...+.
T Consensus 220 lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 220 LLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHh----cCCCcCHHHHHHHHC
Confidence 88777543 455688888877653
No 98
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.32 E-value=1.3e-11 Score=152.24 Aligned_cols=216 Identities=24% Similarity=0.336 Sum_probs=143.8
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEeec
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISA 459 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~ 459 (859)
-.++++.|-+.. ++.++..+.. ....+++|+||||||||++++.||..+ +..++.+++
T Consensus 184 ~~ld~~iGr~~e---i~~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 184 GKIDPVLGRDDE---IRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCCcccCCHHH---HHHHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 456677776654 3444332211 112358999999999999999999865 245777777
Q ss_pred cccch--hhhcccchhhhhHHHHHHh-cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEe
Q 003000 460 SQFVE--IYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 536 (859)
Q Consensus 460 s~~~~--~~~g~~~~~l~~lfe~a~~-~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIa 536 (859)
+.+.. .|.|.....++.+++.+.. ..++|+||||++.+.+.++. +++.. .-+.|...+ .++.+.+|+
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~---~~~~d---~~n~Lkp~l----~~G~l~~Ig 321 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ---AGQGD---AANLLKPAL----ARGELRTIA 321 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc---ccccc---HHHHhhHHh----hCCCeEEEE
Confidence 77653 4777777889999998865 45789999999999765321 11111 223333333 367899998
Q ss_pred ccCCCC-----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCC----C-CCcccHHHHHhhCCCC-----CHHH
Q 003000 537 STNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP----M-ADDVDYLAVASMTDGM-----VGAE 601 (859)
Q Consensus 537 tTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~----~-~~d~dl~~lA~~t~G~-----sgad 601 (859)
||+..+ .+||+|.| ||. .|.|+.|+.+++..||+....... + ..+..+..++..+.+| -+..
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 887643 48999999 996 899999999999999875554321 1 1344466677777665 3455
Q ss_pred HHHHHHHHHHHHHHh-CCCccCHHHHHHHH
Q 003000 602 LANIVEVAAINMMRD-GRTEITTDDLLQAA 630 (859)
Q Consensus 602 L~~Lv~~A~~~A~~~-~~~~It~edl~~Al 630 (859)
...|+++|+...... ....+..+++...+
T Consensus 399 AIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 668889887655433 33345555555444
No 99
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=1.7e-11 Score=141.35 Aligned_cols=191 Identities=18% Similarity=0.220 Sum_probs=123.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 503 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~ 503 (859)
.+++|+||+|+|||+|++++++.+ +..+++++...+...+.......-...|.... ..+++++|||++.+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 459999999999999999999876 57778888776655433221111111233322 356799999999875321
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC---CCCccCCCCCccc--ccccCCCCCHHHHHHHHHHHHcc
Q 003000 504 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARK 578 (859)
Q Consensus 504 ~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~---~LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l~~ 578 (859)
. ....|...++.+...+..+|+++++.|. .+++.|.+ ||. ..+.+++|+.++|..|++..+..
T Consensus 219 -------~---~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 -------A---TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred -------h---hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 1122222222222233455555555554 46788888 884 78899999999999999998877
Q ss_pred CCCCCccc-HHHHHhhCCCCCHHHHHHHHHHHHH---HHHHhCCCccCHHHHHHHHHHHH
Q 003000 579 KPMADDVD-YLAVASMTDGMVGAELANIVEVAAI---NMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 579 ~~~~~d~d-l~~lA~~t~G~sgadL~~Lv~~A~~---~A~~~~~~~It~edl~~Al~~~~ 634 (859)
.++.-+.+ +..++....+ ..+.|.++++..+. .+...+ ..||.+++.+++....
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~-~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSH-QLLYVDDIKALLHDVL 344 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 65443333 4556666554 56677777777642 222233 4699999999988653
No 100
>PLN03025 replication factor C subunit; Provisional
Probab=99.31 E-value=3.5e-11 Score=133.49 Aligned_cols=203 Identities=17% Similarity=0.166 Sum_probs=131.0
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccc-----ccEEEee
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSIS 458 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~-----~~~~~is 458 (859)
.++.....|+++.|....+..+..++.. -.. .+++|+|||||||||+++++|+++. ..++.++
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 3455667888888888877766655431 112 2589999999999999999999872 2344455
Q ss_pred ccccchhhhcccchhhhhHHHHHH-------hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCC
Q 003000 459 ASQFVEIYVGVGASRVRSLYQEAK-------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 531 (859)
Q Consensus 459 ~s~~~~~~~g~~~~~l~~lfe~a~-------~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~ 531 (859)
.++... ...++....... ...+.+++|||+|.+... ..+.|+..++.. ..+
T Consensus 72 ~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~--~~~ 129 (319)
T PLN03025 72 ASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIY--SNT 129 (319)
T ss_pred cccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhcc--cCC
Confidence 443211 112222222211 123569999999998643 456666666643 334
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 003000 532 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAA 610 (859)
Q Consensus 532 vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~ 610 (859)
+.+|.++|....+.+++++ |+ ..+.|++|+.++....++..+...++. ++..+..++..+.| ..+.+.+.++.+
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~- 204 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT- 204 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH-
Confidence 5677788888888899988 65 489999999999999999887665443 33446777777654 334444444421
Q ss_pred HHHHHhCCCccCHHHHHHH
Q 003000 611 INMMRDGRTEITTDDLLQA 629 (859)
Q Consensus 611 ~~A~~~~~~~It~edl~~A 629 (859)
+ .+...|+.+++...
T Consensus 205 --~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 205 --H--SGFGFVNQENVFKV 219 (319)
T ss_pred --H--hcCCCCCHHHHHHH
Confidence 1 23446888888754
No 101
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.7e-11 Score=141.48 Aligned_cols=203 Identities=22% Similarity=0.302 Sum_probs=139.7
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc------------
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 453 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------ 453 (859)
+.....|+++.|.+.++..+..++.. -.++..+||+|||||||||+++++|..+...
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 34567889999998888777766553 1345568999999999999999999877421
Q ss_pred -----------EEEeeccccchhhhcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHH
Q 003000 454 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 518 (859)
Q Consensus 454 -----------~~~is~s~~~~~~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~ 518 (859)
+..++.+. ..+...++.+.+.+.. ..+.+++|||+|.+... .++.
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~--------------a~na 135 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS--------------AFNA 135 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHH--------------HHHH
Confidence 22222210 1112234455444432 34569999999876432 6788
Q ss_pred HHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 003000 519 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 597 (859)
Q Consensus 519 LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~ 597 (859)
|+..++. ...++++|.+||.+..+.+.+.+ |+. .+.|++|+.++....+...+...++. ++..+..++..+.|
T Consensus 136 LLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G- 209 (504)
T PRK14963 136 LLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG- 209 (504)
T ss_pred HHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888884 44577788788888999999988 654 78999999999999999888766554 23345667777765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.+++.++++.+.. . + ..||.+++..++
T Consensus 210 dlR~aln~Lekl~~---~-~-~~It~~~V~~~l 237 (504)
T PRK14963 210 AMRDAESLLERLLA---L-G-TPVTRKQVEEAL 237 (504)
T ss_pred CHHHHHHHHHHHHh---c-C-CCCCHHHHHHHH
Confidence 55666666666532 1 2 368988887764
No 102
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=1.7e-11 Score=143.77 Aligned_cols=190 Identities=15% Similarity=0.201 Sum_probs=127.6
Q ss_pred eEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccC
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~ 502 (859)
.++|+|++|+|||+|+.+|++++ +..+.++++.+|...+...........|... -..+++|+||||+.+....
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-
Confidence 48999999999999999999976 4577889988877665433222111223322 2346899999999885431
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC---CCCCccCCCCCcc--cccccCCCCCHHHHHHHHHHHHc
Q 003000 503 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP---DILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 503 ~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~---~~LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
... ..|+..++.+...+.-+||.+...| ..+++.|.+ || ..++.+..|+.+.|..||+..+.
T Consensus 394 --------~tq---eeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 --------STQ---EEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred --------HHH---HHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 111 2222333332333344455443333 357888988 76 56779999999999999999887
Q ss_pred cCCCCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 578 KKPMADDVD-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 578 ~~~~~~d~d-l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
...+.-..+ +..|+.... -+.+.|..+++.....+...++ .||.+.+.+++..+.
T Consensus 461 ~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~~~~-~itl~la~~vL~~~~ 516 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASLNRQ-PVDLGLTEIVLRDLI 516 (617)
T ss_pred hcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHhh
Confidence 766553333 556666654 3688898888887766665554 599999999887653
No 103
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.31 E-value=1.6e-11 Score=128.74 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=117.5
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccC
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~ 502 (859)
+..++|+||+|||||+|+++++..+ +.++++++++.+.... ..+++... .+.+++|||++.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-
Confidence 4569999999999999999999876 4567788877654321 12333222 34689999999875321
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCC---ccCCCCCcc--cccccCCCCCHHHHHHHHHHHHc
Q 003000 503 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD---PALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 503 ~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ld---paLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
. ....|...++........+|+.++..+..++ +.+.+ || ...|.+|+|+.+++..+++.++.
T Consensus 107 --------~---~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 107 --------E---WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred --------H---HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 0 1223333333222223344444444443332 66766 55 47899999999999999998776
Q ss_pred cCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 578 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 578 ~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
...+. ++.-+..|+.. -+.+.+++.++++.+...+...++ .|+.+.+.+++
T Consensus 174 ~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAKR-KITIPFVKEVL 225 (226)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHh
Confidence 54433 23335667774 566889999999998766666554 69998887765
No 104
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.30 E-value=2.7e-11 Score=135.82 Aligned_cols=204 Identities=24% Similarity=0.310 Sum_probs=140.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc------------
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 453 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------ 453 (859)
+.....|+++.|....+..+...+.. -..+..++|+||+|+|||+++++++..+...
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34557788899998888777665542 1345668999999999999999999876422
Q ss_pred ------------EEEeeccccchhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 454 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 454 ------------~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
++.++.+. ......++.+++.+... ...|++|||+|.+... .++
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--------------~~~ 135 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--------------AFN 135 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH--------------HHH
Confidence 11222110 01122345666665433 2358999999887543 577
Q ss_pred HHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCC
Q 003000 518 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 596 (859)
Q Consensus 518 ~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G 596 (859)
.|+..++. ...++++|.+||.++.+.+.+.+ |+ ..+.|++|+..+...++..++...+.. ++..+..++..+.|
T Consensus 136 ~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 136 ALLKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888874 34567777778888888888888 76 478999999999999999888766543 22345666777755
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 597 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 597 ~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.+.+.+.++.+...+ + ..||.+++.+++
T Consensus 211 -~~~~a~~~lekl~~~~---~-~~it~~~v~~~~ 239 (355)
T TIGR02397 211 -SLRDALSLLDQLISFG---N-GNITYEDVNELL 239 (355)
T ss_pred -ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 6666666666655432 2 359999998775
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=1.6e-11 Score=139.17 Aligned_cols=185 Identities=19% Similarity=0.286 Sum_probs=127.3
Q ss_pred cccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-----------------
Q 003000 391 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----------------- 453 (859)
Q Consensus 391 ~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~----------------- 453 (859)
.|+++.|.+.++..+.+++..-.. .+..++...+.++||+||+|+|||++|+++|..+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 467788999999888888774322 2334555678889999999999999999999865332
Q ss_pred ------EEEeeccccchhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhh
Q 003000 454 ------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 523 (859)
Q Consensus 454 ------~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~l 523 (859)
+..+.... ...+...++.+++.+... ...|++|||+|.+... ..+.||..|
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~--------------aanaLLk~L 141 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER--------------AANALLKAV 141 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--------------HHHHHHHHh
Confidence 11111110 001123456777766542 3469999999998654 568888888
Q ss_pred ccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHH
Q 003000 524 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELA 603 (859)
Q Consensus 524 d~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~ 603 (859)
+. +..++++|.+|+.++.+.|.+++ |+ ..|+|++|+.++....+.... ++. ......++..+.|..+..+.
T Consensus 142 Ee--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EE--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hc--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHH
Confidence 84 44556666566668999999998 65 589999999999887776332 222 33456788889888777664
Q ss_pred HH
Q 003000 604 NI 605 (859)
Q Consensus 604 ~L 605 (859)
-+
T Consensus 213 l~ 214 (394)
T PRK07940 213 LA 214 (394)
T ss_pred Hh
Confidence 33
No 106
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=3.2e-11 Score=141.26 Aligned_cols=204 Identities=19% Similarity=0.229 Sum_probs=139.1
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-------------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 453 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------- 453 (859)
.....|+++.|.+..+..+...+.. -+++..++|+||+|+||||+|+.+|..+...
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3457889999988888776665542 1345668999999999999999999976431
Q ss_pred -----------EEEeeccccchhhhcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHH
Q 003000 454 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 518 (859)
Q Consensus 454 -----------~~~is~s~~~~~~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~ 518 (859)
++.++... ..+...++.+.+.+.. ....|++|||+|.+... .++.
T Consensus 79 C~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~--------------a~na 138 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ--------------SFNA 138 (546)
T ss_pred HHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHH--------------HHHH
Confidence 11121110 0111233455554432 23569999999988543 7888
Q ss_pred HHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 003000 519 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 597 (859)
Q Consensus 519 LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~ 597 (859)
||..|+. ...++++|++|+.+..+.+.+++ |+ ..+.|.+++.++....+...+...++. ++..+..++..+. .
T Consensus 139 LLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-G 212 (546)
T PRK14957 139 LLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-G 212 (546)
T ss_pred HHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 9999984 45677777777778888888888 55 589999999999988888877665443 3334566677664 5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
+.+++.++++.+.... + ..|+.+++.+++.
T Consensus 213 dlR~alnlLek~i~~~---~-~~It~~~V~~~l~ 242 (546)
T PRK14957 213 SLRDALSLLDQAISFC---G-GELKQAQIKQMLG 242 (546)
T ss_pred CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHc
Confidence 6777778887765332 2 4588888887543
No 107
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.28 E-value=7e-11 Score=142.88 Aligned_cols=208 Identities=24% Similarity=0.295 Sum_probs=132.9
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 467 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 467 (859)
....|+++.|....+....-+...+.. ....+++|+|||||||||+|+++++..+.+++.+++...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~----- 88 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA----- 88 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-----
Confidence 346677777776665332222222211 112468999999999999999999999888887776421
Q ss_pred cccchhhhhHHHHHH-----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc--CC
Q 003000 468 GVGASRVRSLYQEAK-----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NR 540 (859)
Q Consensus 468 g~~~~~l~~lfe~a~-----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT--N~ 540 (859)
+...++..+..+. .....++||||+|.+... ..+.|+..++ ...+++|++| |.
T Consensus 89 --~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTTenp 148 (725)
T PRK13341 89 --GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATTENP 148 (725)
T ss_pred --hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecCCCh
Confidence 1112233333321 124569999999988543 4455665554 3456777555 44
Q ss_pred CCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHcc-------CCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 003000 541 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-------KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN 612 (859)
Q Consensus 541 ~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~-------~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~ 612 (859)
...+++++++ |. .++.|++++.+++..|++..+.. ..+. ++..+..|+..+.| ..+.+.++++.+...
T Consensus 149 ~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~ 224 (725)
T PRK13341 149 YFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVES 224 (725)
T ss_pred HhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 4568899998 53 47899999999999999988762 1121 23335777777754 567777888776643
Q ss_pred HHHhC--CCccCHHHHHHHHHHH
Q 003000 613 MMRDG--RTEITTDDLLQAAQIE 633 (859)
Q Consensus 613 A~~~~--~~~It~edl~~Al~~~ 633 (859)
+...+ ...|+.+++.+++...
T Consensus 225 ~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 225 TPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred cccCCCCceeccHHHHHHHHHHh
Confidence 32222 2238888888887653
No 108
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.28 E-value=6e-11 Score=140.85 Aligned_cols=189 Identities=20% Similarity=0.221 Sum_probs=121.0
Q ss_pred EEEECCCCCCchhHHHhhhhcc----------cccEEEeeccccchhh---------h-cc-------cchhhhhHHHHH
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEIY---------V-GV-------GASRVRSLYQEA 481 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~~~~---------~-g~-------~~~~l~~lfe~a 481 (859)
++|+|+||||||++++.+..++ ...+++|+|..+...+ + +. ....+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5699999999999999998765 2557888886543221 0 11 011234455544
Q ss_pred H--hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCC---CCCCCccCCCCCcccc
Q 003000 482 K--DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR---PDILDPALVRPGRFDR 556 (859)
Q Consensus 482 ~--~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~---~~~LdpaLlrpgRfd~ 556 (859)
. .....||+|||||.+.... ..+|..|+.... .....++||+.+|. ++.++|.+.+ ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCccH-----------HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 2235689999999986431 124555554333 23457888999986 4567888877 6543
Q ss_pred -cccCCCCCHHHHHHHHHHHHccCC-CCCcccHHHHHh---hCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 557 -KIFIPKPGLIGRMEILKVHARKKP-MADDVDYLAVAS---MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 557 -~I~~~~Pd~~eR~~Il~~~l~~~~-~~~d~dl~~lA~---~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
.|.|++|+.+++.+||+.++.... +.++.-+..+|. ...|-.... -.+|+.|+.. .+...|+.+|+..|+.
T Consensus 929 eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKA-LDILRrAgEi---kegskVT~eHVrkAle 1004 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKA-LQICRKAFEN---KRGQKIVPRDITEATN 1004 (1164)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHH-HHHHHHHHhh---cCCCccCHHHHHHHHH
Confidence 588999999999999999887532 222333455555 333333333 3566666643 3445799999999987
Q ss_pred HHHcC
Q 003000 632 IEERG 636 (859)
Q Consensus 632 ~~~~g 636 (859)
.+...
T Consensus 1005 eiE~s 1009 (1164)
T PTZ00112 1005 QLFDS 1009 (1164)
T ss_pred HHHhh
Confidence 66443
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.27 E-value=8.9e-11 Score=123.67 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=114.9
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccC
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~ 502 (859)
..+++|+||+|||||+|++++++.+ +..+.++++..+... +. ....+.+++|||++.+...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~~-- 105 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDDA-- 105 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCch--
Confidence 4569999999999999999999865 557777777654321 11 1224568999999986432
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCC-CC--CCCccCCCCCcc--cccccCCCCCHHHHHHHHHHHHc
Q 003000 503 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-PD--ILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 503 ~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~-~~--~LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
....|+..++........++|.+++. +. .+.+.+.+ || ...|.+++|+..++..++...+.
T Consensus 106 ------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 106 ------------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred ------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 22334444443333444334444433 31 24566666 66 56899999999999899887765
Q ss_pred cCCCCC-cccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 578 KKPMAD-DVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 578 ~~~~~~-d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
...+.- +.-+..|+.. -+-+.+++.++++.....|...+ ..||...+.+++.
T Consensus 172 ~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 172 ERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 544432 2335667774 44578888888888655554544 5799999988864
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=5e-11 Score=140.50 Aligned_cols=204 Identities=21% Similarity=0.264 Sum_probs=138.6
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc------------
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 453 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------ 453 (859)
+.....|+++.|...++..+.+++.. -+++..+||+||+|+||||+|+++|+.+...
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 34567888998888887777665542 1345679999999999999999999987542
Q ss_pred ------------EEEeeccccchhhhcccchhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 454 ------------FFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 454 ------------~~~is~s~~~~~~~g~~~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
++.++.+. ..+...++.+.+.+. .....|++|||+|.+... .++
T Consensus 78 sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~--------------a~n 137 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE--------------AFN 137 (624)
T ss_pred HHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH--------------HHH
Confidence 22222110 011122333333332 233569999999998543 678
Q ss_pred HHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCC
Q 003000 518 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 596 (859)
Q Consensus 518 ~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G 596 (859)
.|+..|+. ...++++|++||.+..+.+.+++ |+. +|.|++++.++...++...+....+. ++..+..++..+.|
T Consensus 138 aLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 138 ALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89988884 44678888888888888888888 663 78999999999999998877665542 33446667777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 597 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 597 ~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.+++.++++.+. ..+...|+.+++..++
T Consensus 213 -dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 -SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred -CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 4455556666442 2344579998887765
No 111
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.27 E-value=9.6e-11 Score=130.26 Aligned_cols=210 Identities=20% Similarity=0.271 Sum_probs=130.2
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccc-----ccEEEeec
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISA 459 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~-----~~~~~is~ 459 (859)
++.....|+++.|....+..+..+... ...++++|+||||||||+++++++.++. .+++.+++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 344566788888877777666665431 1123589999999999999999998773 34667777
Q ss_pred cccchhh---h----------cc-------cchhhhhHHHHHHh-----cCCcEEEhhhhHhhhhccCCcCCCCchhHHH
Q 003000 460 SQFVEIY---V----------GV-------GASRVRSLYQEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDA 514 (859)
Q Consensus 460 s~~~~~~---~----------g~-------~~~~l~~lfe~a~~-----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~ 514 (859)
+++.... . +. ....++.+...... ..+.+|+|||++.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------- 140 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------- 140 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH--------------
Confidence 6543211 1 10 01112222222222 23469999999887432
Q ss_pred HHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhh
Q 003000 515 TLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASM 593 (859)
Q Consensus 515 ~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~ 593 (859)
..+.|...++... .++.+|.+++.+..+.+.+.+ |+ ..+.|++|+.++...+++..+...++. ++..+..++..
T Consensus 141 ~~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 141 AQQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred HHHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444555555432 334455566666677778877 54 478999999999999999888765543 34456777777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 594 TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 594 t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
+.| + +..+++.....+ . +...||.+++.+++.
T Consensus 216 ~~g-d---lr~l~~~l~~~~-~-~~~~It~~~v~~~~~ 247 (337)
T PRK12402 216 AGG-D---LRKAILTLQTAA-L-AAGEITMEAAYEALG 247 (337)
T ss_pred cCC-C---HHHHHHHHHHHH-H-cCCCCCHHHHHHHhC
Confidence 743 3 444444443333 2 223699999988653
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=4.4e-11 Score=146.18 Aligned_cols=211 Identities=19% Similarity=0.151 Sum_probs=140.8
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEE-------Ee-
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------SI- 457 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~-------~i- 457 (859)
+....+|+++.|.+.++..|...+.. -+++..+||+||+||||||++++||..+.+..+ .+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 44567899999988887766665441 234556899999999999999999998854211 10
Q ss_pred ecc----------ccchhh--hcccchhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHH
Q 003000 458 SAS----------QFVEIY--VGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 521 (859)
Q Consensus 458 s~s----------~~~~~~--~g~~~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~ 521 (859)
+|- ++.... ...+...++.+.+.+. ...+.|+||||+|.+... .+|.||.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~--------------a~NaLLK 142 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ--------------GFNALLK 142 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH--------------HHHHHHH
Confidence 000 000000 0001123344433322 244679999999999654 7889999
Q ss_pred hhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHhhCCCCCHH
Q 003000 522 CLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGA 600 (859)
Q Consensus 522 ~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~-d~dl~~lA~~t~G~sga 600 (859)
.|+. ...+++||++|+.++.|.+.|++ |+ .+|.|..++.++...+|...+...++.. +..+..|+..+.| +.+
T Consensus 143 ~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR 216 (824)
T PRK07764 143 IVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVR 216 (824)
T ss_pred HHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 45678888888888888889988 54 4889999999999999988886655542 3335566666655 777
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 601 ELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 601 dL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
++.++++..... .+...||.+++...+
T Consensus 217 ~Al~eLEKLia~---~~~~~IT~e~V~all 243 (824)
T PRK07764 217 DSLSVLDQLLAG---AGPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHHhh---cCCCCCCHHHHHHHh
Confidence 777777765422 234468888877654
No 113
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=6.2e-11 Score=137.97 Aligned_cols=210 Identities=21% Similarity=0.279 Sum_probs=139.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-------EEEe-e
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-S 458 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~-------~~~i-s 458 (859)
.....|.++.|.+..+..+.+.+.. -+++..++|+||+|+||||+|+.+|..+... .+.+ +
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 3556788898988888777665542 1245568999999999999999999987531 1110 1
Q ss_pred c-----cccchhh-h----cccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhc
Q 003000 459 A-----SQFVEIY-V----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 524 (859)
Q Consensus 459 ~-----s~~~~~~-~----g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld 524 (859)
| +.+...+ + ..+...++.+.+.+... .+.|++|||++.+... .++.|+..++
T Consensus 79 c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~--------------a~naLLk~LE 144 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE--------------AFNALLKTLE 144 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH--------------HHHHHHHHHh
Confidence 1 0111111 0 01122345555554432 3469999999987543 5788888888
Q ss_pred cccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHHH
Q 003000 525 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELA 603 (859)
Q Consensus 525 ~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~t~G~sgadL~ 603 (859)
. +..++++|.+|+.++.+.+++.+ |+. .+.|++|+..+....+..++...++..+ ..+..++..+.| +.+++.
T Consensus 145 e--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al 218 (486)
T PRK14953 145 E--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAA 218 (486)
T ss_pred c--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 44566777667778888888887 654 7899999999999999988877655432 335667777654 567777
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 604 NIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 604 ~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
++++.+... +...||.+++.+++.
T Consensus 219 ~~Ldkl~~~----~~~~It~~~V~~~lg 242 (486)
T PRK14953 219 SLLDQASTY----GEGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHhC
Confidence 777776533 234689998888653
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=3.6e-11 Score=142.01 Aligned_cols=210 Identities=19% Similarity=0.203 Sum_probs=140.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccE-------EEe-e
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI-S 458 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~-------~~i-s 458 (859)
.....|+++.|...++..+.+.+.. -+++..+||+||+||||||+|+++|+.+.... +.+ +
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 4567899999988888777666542 23556689999999999999999999775321 110 0
Q ss_pred cccc-------chh-hh-c---ccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHh
Q 003000 459 ASQF-------VEI-YV-G---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 522 (859)
Q Consensus 459 ~s~~-------~~~-~~-g---~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ 522 (859)
|-.+ ... .+ + .+...++.+.+.+.. ....|++|||++.+... .++.||..
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~--------------A~NALLK~ 141 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA--------------GFNALLKI 141 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH--------------HHHHHHHH
Confidence 0000 000 00 0 112233444444322 33569999999888543 78899999
Q ss_pred hccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHhhCCCCCHHH
Q 003000 523 LDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAE 601 (859)
Q Consensus 523 ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~-d~dl~~lA~~t~G~sgad 601 (859)
|+ ....++++|.+|+.++.+.+.+++ |. .++.|.+++..+....+...+...++.- +..+..++..+ |.+.++
T Consensus 142 LE--Epp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s-~GdlR~ 215 (584)
T PRK14952 142 VE--EPPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG-GGSPRD 215 (584)
T ss_pred Hh--cCCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHH
Confidence 98 455688888888888999999988 63 5899999999999989988887655432 23344555555 457777
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 602 LANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 602 L~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.++++.+... .+...||.+++...+
T Consensus 216 aln~Ldql~~~---~~~~~It~~~v~~ll 241 (584)
T PRK14952 216 TLSVLDQLLAG---AADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHhc---cCCCCcCHHHHHHHH
Confidence 77888876532 224468888877664
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=6.8e-11 Score=141.25 Aligned_cols=210 Identities=21% Similarity=0.291 Sum_probs=143.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEE---eecccc
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---ISASQF 462 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~---is~s~~ 462 (859)
+.....|.++.|.+.++..+...+.. -+++..+||+||+|+|||++|+++|..+.+.-.. -.|+..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 34667899999998888777766652 1345668999999999999999999877542110 011110
Q ss_pred -------chhhhc-----ccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc
Q 003000 463 -------VEIYVG-----VGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF 526 (859)
Q Consensus 463 -------~~~~~g-----~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~ 526 (859)
...+.. .+...++.+.+.+... ...|++|||++.+... .++.||..|+.
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~--------------A~NALLKtLEE- 144 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS--------------AFNALLKTLEE- 144 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH--------------HHHHHHHHhhc-
Confidence 000100 1123356676666543 3469999999987543 78889999984
Q ss_pred cCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHHHHH
Q 003000 527 EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANI 605 (859)
Q Consensus 527 ~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~t~G~sgadL~~L 605 (859)
+..++++|.+|+.++.|.+.+++ |+. .+.|.+|+.++....+...+...++..+ ..+..+|..+.| +.+++.++
T Consensus 145 -PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 145 -PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred -CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 55678888888888999999988 664 8999999999999999887766554322 235667776654 55666677
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 606 VEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 606 v~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+..+... +...|+.+++..++
T Consensus 220 Lekl~~y----~~~~It~e~V~ell 240 (725)
T PRK07133 220 AEQVSIF----GNNKITLKNVEELF 240 (725)
T ss_pred HHHHHHh----ccCCCCHHHHHHHH
Confidence 7765433 22348888887764
No 116
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=8.6e-11 Score=139.77 Aligned_cols=202 Identities=22% Similarity=0.312 Sum_probs=142.7
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-------------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 453 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------- 453 (859)
.....|+++.|...++..+.+.+.. -+++..+||+||+|+||||+++++|+.+...
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 3567899999999888777766542 2356678999999999999999999987532
Q ss_pred -----------EEEeeccccchhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHH
Q 003000 454 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 518 (859)
Q Consensus 454 -----------~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~ 518 (859)
++.+++.. ..+...++.+.+.+... ...|++|||+|.+... .++.
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~--------------a~na 138 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN--------------AFNA 138 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH--------------HHHH
Confidence 11111111 11223455666655432 2459999999988643 6889
Q ss_pred HHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 003000 519 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 597 (859)
Q Consensus 519 LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~ 597 (859)
|+..|+ ....+++||.+||.++.|.+.+++ |+ ..+.|..++..+....+...+...++. ++..+..++..+.|
T Consensus 139 LLk~LE--epp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G- 212 (576)
T PRK14965 139 LLKTLE--EPPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG- 212 (576)
T ss_pred HHHHHH--cCCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-
Confidence 999998 455688888888889999999988 65 488999999999888888877665543 33446667777765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQA 629 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~A 629 (859)
+.+++.++++.+.... + ..|+.+++...
T Consensus 213 ~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 213 SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 6666767777655332 2 35888887765
No 117
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=5.7e-11 Score=139.41 Aligned_cols=204 Identities=21% Similarity=0.287 Sum_probs=139.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc-------------
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------- 452 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~------------- 452 (859)
+.....|+++.|.+..+..+.+.+. +-.++.+++|+||+|+||||+|+++|..+..
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 3456788899998888766665443 1244567999999999999999999987632
Q ss_pred -----------cEEEeeccccchhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 453 -----------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 453 -----------~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
.++.++.+. ..+...++.+.+.+... ...|++|||+|.+... ..+
T Consensus 78 sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--------------A~N 137 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--------------AWN 137 (605)
T ss_pred HHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH--------------HHH
Confidence 111121111 01122345565554432 2458999999987533 678
Q ss_pred HHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCC
Q 003000 518 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 596 (859)
Q Consensus 518 ~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G 596 (859)
.|+..|+ .+..++++|++|+.+..+.+.+++ |+. .+.|++|+..+....+...+...+.. ++..+..++..+.|
T Consensus 138 aLLKtLE--EPp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 138 ALLKTLE--EPPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHHHH--hCCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888888 445678888888888999999988 664 79999999999999998877655432 23346667777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 597 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 597 ~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.+++.++++.+... .+. .|+.+++...+
T Consensus 213 -dlR~AlnlLekL~~y---~~~-~It~e~V~ell 241 (605)
T PRK05896 213 -SLRDGLSILDQLSTF---KNS-EIDIEDINKTF 241 (605)
T ss_pred -cHHHHHHHHHHHHhh---cCC-CCCHHHHHHHh
Confidence 566666777764432 233 38888887754
No 118
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.23 E-value=5.9e-11 Score=128.05 Aligned_cols=184 Identities=21% Similarity=0.215 Sum_probs=117.5
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch--hhhcc----cchhh---------------------hhHHH
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE--IYVGV----GASRV---------------------RSLYQ 479 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~--~~~g~----~~~~l---------------------~~lfe 479 (859)
..++|+||||||||++|++||..++.+++.+++..-.. ..+|. ....+ ..++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 45899999999999999999999999999998765321 11211 11100 11222
Q ss_pred HHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc--------------CCCCeEEEeccCCCC---
Q 003000 480 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------------GRGNVITIASTNRPD--- 542 (859)
Q Consensus 480 ~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--------------~~~~vlVIatTN~~~--- 542 (859)
.+ . .+.++++|||+.+.+. +.+.|+..|+... ...++.||+|+|...
T Consensus 102 A~-~-~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 102 AV-R-EGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HH-H-cCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 22 2 3469999999997654 6666776665411 124678999999763
Q ss_pred --CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcc--cHHHHHhh---C---CCCCHHHHHHHHHHHHHH
Q 003000 543 --ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV--DYLAVASM---T---DGMVGAELANIVEVAAIN 612 (859)
Q Consensus 543 --~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~--dl~~lA~~---t---~G~sgadL~~Lv~~A~~~ 612 (859)
.++++|++ || ..+.++.|+.++..+|+..+.. ..... .+..++.. . ...+ ++.++.-+...
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~ 236 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVA 236 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHH
Confidence 46888988 88 5789999999999999998752 22111 01111111 1 1223 44444444444
Q ss_pred HHHhCCCccCHHHHHHHHHHHHc
Q 003000 613 MMRDGRTEITTDDLLQAAQIEER 635 (859)
Q Consensus 613 A~~~~~~~It~edl~~Al~~~~~ 635 (859)
+....+..++.+||.+.+..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 237 TQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHcCCCCCCCcHHHHHHHHHHhc
Confidence 44556777888888888766543
No 119
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.23 E-value=1.3e-10 Score=143.79 Aligned_cols=196 Identities=24% Similarity=0.373 Sum_probs=131.2
Q ss_pred cccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEeecc
Q 003000 391 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISAS 460 (859)
Q Consensus 391 ~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s 460 (859)
.++.+.|-++.+..+.++.. ...+++++|+||||||||++++.||..+ +.+++.++++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~ 244 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG 244 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH
Confidence 35556666655544433321 2234568999999999999999999876 3678889888
Q ss_pred ccc--hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc
Q 003000 461 QFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 538 (859)
Q Consensus 461 ~~~--~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT 538 (859)
.+. ..|.|+....++.+++.+....++|+|||||+.+.+.... .|+.. ..+.|...+ .++.+.+|++|
T Consensus 245 ~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~g~~~---~a~lLkp~l----~rg~l~~IgaT 314 (821)
T CHL00095 245 LLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---EGAID---AANILKPAL----ARGELQCIGAT 314 (821)
T ss_pred HHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---CCccc---HHHHhHHHH----hCCCcEEEEeC
Confidence 765 3577877888999999998878899999999999754321 11111 222222222 35778999888
Q ss_pred CCCC-----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHcc----CCC-CCcccHHHHHhhCCCCC-----HHHHH
Q 003000 539 NRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK----KPM-ADDVDYLAVASMTDGMV-----GAELA 603 (859)
Q Consensus 539 N~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~----~~~-~~d~dl~~lA~~t~G~s-----gadL~ 603 (859)
+..+ ..||+|.+ ||. .|.++.|+.++...|++..... ..+ .++..+..++..+.+|. +....
T Consensus 315 t~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 315 TLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred CHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHH
Confidence 8764 47899998 997 5789999999999988754321 122 12333555666665543 34444
Q ss_pred HHHHHHHH
Q 003000 604 NIVEVAAI 611 (859)
Q Consensus 604 ~Lv~~A~~ 611 (859)
.++++|+.
T Consensus 392 dlld~a~a 399 (821)
T CHL00095 392 DLLDEAGS 399 (821)
T ss_pred HHHHHHHH
Confidence 56666543
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=1.3e-10 Score=137.89 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=145.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEee-------
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS------- 458 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is------- 458 (859)
+.....|+++.|.+..+..+.+++.. -+++.++||+||+|+||||+|+++|+.+.......+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 34556899999988888777765542 245678999999999999999999998754321111
Q ss_pred cc------ccchh-h-----h----cccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHH
Q 003000 459 AS------QFVEI-Y-----V----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 518 (859)
Q Consensus 459 ~s------~~~~~-~-----~----g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~ 518 (859)
|+ .+... + + ..+...++.+.+.+... ...|++|||++.+... .++.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~--------------a~na 151 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA--------------AFNA 151 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH--------------HHHH
Confidence 11 00000 0 0 01123456666666533 2569999999988543 6888
Q ss_pred HHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhhCCCC
Q 003000 519 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGM 597 (859)
Q Consensus 519 LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~t~G~ 597 (859)
|+..|+. ...++++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....+...+...+..-+ ..+..|+..+.|
T Consensus 152 LLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 152 LLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred HHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9988884 45677777777888888888888 65 47899999999999999988876654433 345566777755
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
+.+++.++++.+... +...||.+++...+.
T Consensus 226 dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 226 SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 777887888776533 234699999987654
No 121
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.23 E-value=9.4e-11 Score=131.56 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=61.4
Q ss_pred CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc--------ccCCCCeEEEecc----CCCCCCCccCCCCC
Q 003000 485 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG--------FEGRGNVITIAST----NRPDILDPALVRPG 552 (859)
Q Consensus 485 ~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~--------~~~~~~vlVIatT----N~~~~LdpaLlrpg 552 (859)
..+||||||||++...... .+.+-...-+...||..+++ ..+..+++||++. ..|..|-|+|. |
T Consensus 247 ~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--G 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--G 322 (441)
T ss_pred cCCEEEEEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--C
Confidence 3569999999999865311 11111222377888888887 2345789999766 34566778885 5
Q ss_pred cccccccCCCCCHHHHHHHHH
Q 003000 553 RFDRKIFIPKPGLIGRMEILK 573 (859)
Q Consensus 553 Rfd~~I~~~~Pd~~eR~~Il~ 573 (859)
||+.++.+.+++.++...||.
T Consensus 323 R~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 323 RFPIRVELQALTTDDFERILT 343 (441)
T ss_pred ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999984
No 122
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=4.3e-11 Score=148.17 Aligned_cols=164 Identities=24% Similarity=0.422 Sum_probs=117.2
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEeec
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISA 459 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~ 459 (859)
-.++.+.|-+.. ++.++.-+.. +...+++|+||||||||++++.||..+ +.+++.+++
T Consensus 175 ~~l~~vigr~~e---i~~~i~iL~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEE---IRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHH---HHHHHHHHhc---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 356666666654 3444432221 112358999999999999999999977 667888888
Q ss_pred cccc--hhhhcccchhhhhHHHHHHh-cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEe
Q 003000 460 SQFV--EIYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 536 (859)
Q Consensus 460 s~~~--~~~~g~~~~~l~~lfe~a~~-~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIa 536 (859)
+.+. ..|.|.....++.+|+.+.. ..++|+||||++.+.+... ++|+.. ..+.|... ..++.+.+|+
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~---~~~~~d---~~~~lkp~----l~~g~l~~Ig 312 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK---ADGAMD---AGNMLKPA----LARGELHCVG 312 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCC---Cccchh---HHHHhcch----hhcCCCeEEE
Confidence 8765 34777777888899988654 5688999999999975432 122211 22223322 2467899999
Q ss_pred ccCCCC-----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHcc
Q 003000 537 STNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 578 (859)
Q Consensus 537 tTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~ 578 (859)
+|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.....
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 998876 38999999 998 5889999999999999876644
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=7.2e-11 Score=136.44 Aligned_cols=190 Identities=16% Similarity=0.200 Sum_probs=126.5
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchhhhcccch---hhhhHHHHHHhcCCcEEEhhhhHhhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS---RVRSLYQEAKDNAPSVVFIDELDAVG 498 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~---~l~~lfe~a~~~~p~Il~iDEId~l~ 498 (859)
.+++|+|++|+|||+|++++++.+ +..++++++.++...+...... .+..+.+. ...+++|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 458999999999999999999855 4567788888877654432111 11112122 2346799999998774
Q ss_pred hccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC---CCCccCCCCCcc--cccccCCCCCHHHHHHHHH
Q 003000 499 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF--DRKIFIPKPGLIGRMEILK 573 (859)
Q Consensus 499 ~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~---~LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~ 573 (859)
.. +. ....|...++.....+..+||.+...|. .+++.|.+ || +.++.+.+|+.++|..|++
T Consensus 220 ~k---------~~---~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YK---------EK---TNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CC---------HH---HHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 32 11 2223333333333334445555544554 35788887 77 4677899999999999999
Q ss_pred HHHccCCC---CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHHHHH
Q 003000 574 VHARKKPM---ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTEITTDDLLQAAQIE 633 (859)
Q Consensus 574 ~~l~~~~~---~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~-~~~It~edl~~Al~~~ 633 (859)
..+...++ .++.-+..|+..+.| +.+.|.++++.+...+.... ...||.+.+.+++...
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 99876542 233335667777765 78889899998876665542 2579999999998764
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.22 E-value=6.2e-11 Score=130.97 Aligned_cols=160 Identities=22% Similarity=0.291 Sum_probs=108.6
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
.++.....|+++.|.+..+..+...+.. -..|..++|+||||+|||+++++++..++.+++.++++. .
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~ 79 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C 79 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c
Confidence 4556677889998888887766665541 123555777999999999999999999988888888876 2
Q ss_pred hhhhcccchhhhhHHHHHH-hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 542 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~-~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~ 542 (859)
. .......+........ ...+.+++|||+|.+... . ....|...++.. ..++.+|.+||.++
T Consensus 80 ~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~---~~~~L~~~le~~--~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 80 R--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------D---AQRHLRSFMEAY--SKNCSFIITANNKN 142 (316)
T ss_pred c--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------H---HHHHHHHHHHhc--CCCceEEEEcCChh
Confidence 1 1111111111111111 135789999999887321 1 223333344532 35677888999999
Q ss_pred CCCccCCCCCcccccccCCCCCHHHHHHHHHHH
Q 003000 543 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 575 (859)
Q Consensus 543 ~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~ 575 (859)
.+++++++ ||. .+.|+.|+.+++..++...
T Consensus 143 ~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 143 GIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hchHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 99999988 775 7899999999998887654
No 125
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.22 E-value=9.1e-11 Score=124.58 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=113.4
Q ss_pred ceEEEECCCCCCchhHHHhhhhccc---ccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 503 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~---~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~ 503 (859)
..++|+||+|||||+|+.++++.+. ....+++....... ...+.+.... ..+++|||++.+...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~--- 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGD--- 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCC---
Confidence 4689999999999999999998653 33445554432111 1122232222 358999999987532
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCC-eEEEeccCCCCC---CCccCCCCCccc--ccccCCCCCHHHHHHHHHHHHc
Q 003000 504 IKGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 504 ~~~sgge~~r~~l~~LL~~ld~~~~~~~-vlVIatTN~~~~---LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
......+-.++..+ ...++ .+++.+++.|.. +.|.|.+ |+. .++.+.+|+.+++..+++..+.
T Consensus 113 ------~~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 113 ------ELWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred ------HHHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 11122232333222 22333 355566666655 5789988 774 7899999999999999998666
Q ss_pred cCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 578 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 578 ~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
..++. ++.-+..|+....| +.+.+.++++.....+...+ ..||.+.+.+++.
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~k~~l~ 234 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITAQ-RKLTIPFVKEILK 234 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHc
Confidence 54443 23335667777764 67778888887543333333 4599998888753
No 126
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3e-11 Score=132.38 Aligned_cols=243 Identities=20% Similarity=0.242 Sum_probs=140.5
Q ss_pred hhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh--hhhhcCchhH
Q 003000 283 KDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQ--GEAEQNPHLK 360 (859)
Q Consensus 283 ~~~~~i~~l~~~~~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~--~~~~~~~~~k 360 (859)
..++.|..+ +...+++|+|||.-|..... +......+.++.++.+++++...-....+....... .+.......+
T Consensus 474 ~VCtdIIHL-D~qkLhyYrGNY~~FKKmY~--Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~~K 550 (807)
T KOG0066|consen 474 SVCTDIIHL-DNQKLHYYRGNYTLFKKMYA--QKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKK 550 (807)
T ss_pred HHHHHHhhh-hhhhhhhhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhcccc
Confidence 456677777 77889999999999999998 566677788888888887777643221110000000 0000000011
Q ss_pred Hhhchhhh-HHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhc-ccchhhhcc--CCccCceEEEECCCC
Q 003000 361 MAMQFMKS-GARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRR--GVRIPGGILLCGPPG 436 (859)
Q Consensus 361 ~~v~~~~i-~~~vs~~tgip~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~-~~~~~~~~~--gl~~~~gvLL~GPpG 436 (859)
...+.+.. +..+ +.+..+-...+.|++...+...++++.++.+.| +...+|..+ |+.....|+|+||||
T Consensus 551 nq~dded~gapEL-------L~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNG 623 (807)
T KOG0066|consen 551 NQNDDEDAGAPEL-------LQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNG 623 (807)
T ss_pred ccCccccccCHHH-------HhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCC
Confidence 11111111 1111 011222335677888888999999999999988 455677665 555556799999999
Q ss_pred CCchhHHHhhhhcccccEEEeeccccchh-hhcccch-hh---hhHHHHHHhcCCcEEEhhhhHhhhhccCCcC------
Q 003000 437 VGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGAS-RV---RSLYQEAKDNAPSVVFIDELDAVGRERGLIK------ 505 (859)
Q Consensus 437 tGKTtLakaLA~el~~~~~~is~s~~~~~-~~g~~~~-~l---~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~------ 505 (859)
+|||||++.|.|.+.+.-+...-...... ++.+... .+ ....+...+. . -+--.+....++..++.+
T Consensus 624 VGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~-F-Nlpyq~ARK~LG~fGL~sHAHTik 701 (807)
T KOG0066|consen 624 VGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRK-F-NLPYQEARKQLGTFGLASHAHTIK 701 (807)
T ss_pred ccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHh-c-CCChHHHHHHhhhhhhhhccceEe
Confidence 99999999999999877665543332211 2222111 00 0111111100 0 011123333333322211
Q ss_pred ---CCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCCC
Q 003000 506 ---GSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 543 (859)
Q Consensus 506 ---~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~~ 543 (859)
-|||+..|.+++.|. .....|+|+ .+||..+.
T Consensus 702 ikdLSGGQKaRValaeLa------l~~PDvlILDEPTNNLDI 737 (807)
T KOG0066|consen 702 IKDLSGGQKARVALAELA------LGGPDVLILDEPTNNLDI 737 (807)
T ss_pred eeecCCcchHHHHHHHHh------cCCCCEEEecCCCCCcch
Confidence 289999999999887 456677887 88887653
No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=99.21 E-value=1.6e-10 Score=122.70 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=118.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 503 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~ 503 (859)
..++|+||+|+|||+|+.++++++ +...++++..++...+ ..+.+.... .++++||+++.+....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 568999999999999999998754 4566777776654321 123333332 3589999999774321
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC---CCccCCCCCcc--cccccCCCCCHHHHHHHHHHHHcc
Q 003000 504 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 578 (859)
Q Consensus 504 ~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~---LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~~ 578 (859)
. ....|...++.+...+..+||+++..|.. ..|.|.+ || ..++.+.+|+.+++..+++..+..
T Consensus 114 -------~---~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 114 -------D---WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred -------H---HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1 12234444444444556677777665543 4688888 77 467788999999999999966655
Q ss_pred CCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 579 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 579 ~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
..+. ++.-+..|+.... -+.+.+.++++.-...+...+ ..||..-+.+++
T Consensus 182 ~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~~~-~~it~~~~~~~L 232 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQASLQAQ-RKLTIPFLKETL 232 (234)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHh
Confidence 4443 2333556666665 477888888887665444433 459988888775
No 128
>PRK08727 hypothetical protein; Validated
Probab=99.21 E-value=1.1e-10 Score=123.67 Aligned_cols=180 Identities=22% Similarity=0.282 Sum_probs=114.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 503 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~ 503 (859)
..++|+||+|||||+|+.+++..+ +....++++.++.. .+...++.. ....+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCCh--
Confidence 349999999999999999998765 44555666544322 122334433 345699999998775321
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC---CccCCCCCcc--cccccCCCCCHHHHHHHHHHHHcc
Q 003000 504 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL---DPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 578 (859)
Q Consensus 504 ~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L---dpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~~ 578 (859)
.....+-.++..+ ...+.-+|+.+.+.|..+ +|.+.+ || ..++.+++|+.+++..|++.++..
T Consensus 110 -------~~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 1111222333332 222323444455566654 789988 76 567899999999999999987755
Q ss_pred CCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003000 579 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 579 ~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~ 632 (859)
..+. ++..+..|+..+.| +.+.+.++++.....+...++ .||.+.+.+++..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~~ 230 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLEE 230 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHhh
Confidence 4443 33346778888764 444555667765544554444 6999999888753
No 129
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=1e-10 Score=145.26 Aligned_cols=175 Identities=23% Similarity=0.379 Sum_probs=124.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc----------cccEEEeeccccc--hhhhcccchhhhhHHHHHHhc-CCcEEEhhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDN-APSVVFIDE 493 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~--~~~~g~~~~~l~~lfe~a~~~-~p~Il~iDE 493 (859)
.+++|+||||||||++++.||..+ +.+++.++++.+. ..|.|.....+..+|..+... .+.|+||||
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDE 274 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDE 274 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 457999999999999999999875 5667888877765 347777777888899888653 588999999
Q ss_pred hHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC-----CCCccCCCCCcccccccCCCCCHHHH
Q 003000 494 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGR 568 (859)
Q Consensus 494 Id~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR 568 (859)
++.+.+... +.|. ....+.|... ..++.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++
T Consensus 275 ih~l~~~g~----~~~~--~d~~~~Lk~~----l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~ 341 (852)
T TIGR03346 275 LHTLVGAGK----AEGA--MDAGNMLKPA----LARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDT 341 (852)
T ss_pred HHHhhcCCC----Ccch--hHHHHHhchh----hhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHH
Confidence 999975321 1111 1123333322 2467789998888764 47999999 996 589999999999
Q ss_pred HHHHHHHHccCCCC-----CcccHHHHHhhCCCC-----CHHHHHHHHHHHHHHHH
Q 003000 569 MEILKVHARKKPMA-----DDVDYLAVASMTDGM-----VGAELANIVEVAAINMM 614 (859)
Q Consensus 569 ~~Il~~~l~~~~~~-----~d~dl~~lA~~t~G~-----sgadL~~Lv~~A~~~A~ 614 (859)
..|++......... .+..+...+..+.+| -|.....|+++|+....
T Consensus 342 ~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 342 ISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIR 397 (852)
T ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHH
Confidence 99999776554322 233455555555554 45566688888775543
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.8e-10 Score=130.10 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=136.6
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeecccc----
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF---- 462 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~---- 462 (859)
.....|+++.|....+..+...+.. -.++.+++|+||+|+|||+++++++..+..+........+
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 4567888888888877666555431 1346679999999999999999999977542211110000
Q ss_pred --chhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEe
Q 003000 463 --VEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 536 (859)
Q Consensus 463 --~~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIa 536 (859)
.+.....+...++.+++.+... .+.++++||++.+... .++.|+..++. ...++++|.
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll~~le~--~~~~~~~Il 143 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFLKTLEE--PPAHAIFIL 143 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHHHHHhC--CCCceEEEE
Confidence 0000011123455666655432 3469999999987543 56778777774 344566666
Q ss_pred ccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 003000 537 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615 (859)
Q Consensus 537 tTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~ 615 (859)
+|+.+..+.+++.+ |+ ..+.|++|+..+...++...+...++. ++..+..++..+.| +.+.+.+.++.....+
T Consensus 144 ~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~-- 217 (367)
T PRK14970 144 ATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC-- 217 (367)
T ss_pred EeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc--
Confidence 77777888889887 55 368999999999999988877766543 34446667777654 5666666666554332
Q ss_pred hCCCccCHHHHHHHHH
Q 003000 616 DGRTEITTDDLLQAAQ 631 (859)
Q Consensus 616 ~~~~~It~edl~~Al~ 631 (859)
+.. ||.+++..++.
T Consensus 218 -~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 -GKN-ITRQAVTENLN 231 (367)
T ss_pred -CCC-CCHHHHHHHhC
Confidence 333 88888876653
No 131
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.20 E-value=5.9e-11 Score=130.09 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=98.2
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh--hhcccchhh----------hhHHHHHHhcCCcEEEhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGASRV----------RSLYQEAKDNAPSVVFIDE 493 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~--~~g~~~~~l----------~~lfe~a~~~~p~Il~iDE 493 (859)
.++++|.||||||||++++.||..++.++++++++..... ++|...-.+ ...+-.+. ..++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 4569999999999999999999999999999998876655 444321100 11233333 3467899999
Q ss_pred hHhhhhccCCcCCCCchhHHHHHHHHHHhhcc------------ccCCCCeEEEeccCCCC------------CCCccCC
Q 003000 494 LDAVGRERGLIKGSGGQERDATLNQLLVCLDG------------FEGRGNVITIASTNRPD------------ILDPALV 549 (859)
Q Consensus 494 Id~l~~~r~~~~~sgge~~r~~l~~LL~~ld~------------~~~~~~vlVIatTN~~~------------~LdpaLl 549 (859)
++...++ +++.|...|+. +....++.||+|+|..+ .++.+++
T Consensus 143 in~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 143 YDAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred hhccCHH--------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 9987554 34443333331 22345789999999864 3688998
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHcc
Q 003000 550 RPGRFDRKIFIPKPGLIGRMEILKVHARK 578 (859)
Q Consensus 550 rpgRfd~~I~~~~Pd~~eR~~Il~~~l~~ 578 (859)
. ||-.++.++.|+.++-.+|+......
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 8 99888899999999999999876543
No 132
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.3e-10 Score=134.14 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=150.4
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccE-------EEe--
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI-- 457 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~-------~~i-- 457 (859)
.....|+++.|...++..+.+++.. -++..+.+|.||.||||||+||.+|..+++.- +.+
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 4567899999988888888777663 23455689999999999999999999775432 111
Q ss_pred ----eccccchh-----hhcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhc
Q 003000 458 ----SASQFVEI-----YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 524 (859)
Q Consensus 458 ----s~s~~~~~-----~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld 524 (859)
+-+.+.+. -...+...++.+.+.+.. ..+.|.+|||++-+... .+|.||..++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~--------------afNALLKTLE 144 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ--------------AFNALLKTLE 144 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH--------------HHHHHhcccc
Confidence 11111111 011223445667776653 33569999999988544 8999999999
Q ss_pred cccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCccc-HHHHHhhCCCCCHHHHH
Q 003000 525 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD-YLAVASMTDGMVGAELA 603 (859)
Q Consensus 525 ~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d-l~~lA~~t~G~sgadL~ 603 (859)
.+..+|++|.+|..++.+++.+++ |.. .+.|...+.++....+...+.+..+.-+.+ +..+|+...| |.+|..
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 678899999999999999999999 543 678888999999999998888777765544 5556666665 778888
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 604 NIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 604 ~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
.+++.|.... ...||.+.+...+
T Consensus 219 slLDq~i~~~----~~~It~~~v~~~l 241 (515)
T COG2812 219 SLLDQAIAFG----EGEITLESVRDML 241 (515)
T ss_pred HHHHHHHHcc----CCcccHHHHHHHh
Confidence 9999886443 2457776666554
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=1.8e-10 Score=134.46 Aligned_cols=204 Identities=20% Similarity=0.239 Sum_probs=141.4
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc------------
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 453 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------ 453 (859)
+.....|+++.|.+.++..+...+.. -.++..+||+||+|+|||++|+++|..+...
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34567899999998888777766541 1356668999999999999999999876321
Q ss_pred ------------EEEeeccccchhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 454 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 454 ------------~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
++.++.+. ..+...++.+.+..... ...|++|||++.+... .++
T Consensus 76 ~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~--------------A~N 135 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE--------------AFN 135 (535)
T ss_pred HHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH--------------HHH
Confidence 11111110 01123445555443322 2358999999888654 788
Q ss_pred HHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCC
Q 003000 518 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 596 (859)
Q Consensus 518 ~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G 596 (859)
.||..|+. ...++.+|.+|+.+..+.+++++ |. ..+.|.+++.++....+...+...++. ++..+..++..+.|
T Consensus 136 ALLK~LEE--pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 136 ALLKTLEE--PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG 210 (535)
T ss_pred HHHHHHhh--cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999985 35567777777778999999998 64 588999999999988888877765543 23446667777665
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 597 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 597 ~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.+++.+++..+...+ ...||.+++...+
T Consensus 211 -dlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 211 -SLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred -cHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 7788888888776543 2358888877654
No 134
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.19 E-value=3.9e-10 Score=120.09 Aligned_cols=192 Identities=21% Similarity=0.215 Sum_probs=128.8
Q ss_pred ccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc----E--EE
Q 003000 383 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----F--FS 456 (859)
Q Consensus 383 ~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~----~--~~ 456 (859)
+.++.....|+++.|.+.+|..+.+.+.. . .-..+|||||||||||+.++++|.++..+ . ..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 34566778899999998888888776654 1 22348999999999999999999988541 1 12
Q ss_pred eeccccchhhhcccchhhhhHHHHHHhc---------C-CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc
Q 003000 457 ISASQFVEIYVGVGASRVRSLYQEAKDN---------A-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF 526 (859)
Q Consensus 457 is~s~~~~~~~g~~~~~l~~lfe~a~~~---------~-p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~ 526 (859)
.+.++...+.+ ...++ .-|...... + +.|++|||.|.+..+ ..+.|...|+.+
T Consensus 94 lnaSderGisv--vr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aLrr~mE~~ 156 (346)
T KOG0989|consen 94 LNASDERGISV--VREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAALRRTMEDF 156 (346)
T ss_pred hcccccccccc--hhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHHHHHHhcc
Confidence 23332221111 11111 123332211 1 269999999998765 788899999964
Q ss_pred cCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcc-cHHHHHhhCCCCCHHHHHHH
Q 003000 527 EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV-DYLAVASMTDGMVGAELANI 605 (859)
Q Consensus 527 ~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~-dl~~lA~~t~G~sgadL~~L 605 (859)
..++.+|.-||.++.|.+.+.+ |.. .+.|++...+.....|+..+.+.++.-+. .+..++..++|-- ++....
T Consensus 157 --s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL-R~Ait~ 230 (346)
T KOG0989|consen 157 --SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL-RRAITT 230 (346)
T ss_pred --ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH-HHHHHH
Confidence 4567788889999999999988 664 67888888888888888887776665433 3667777776633 333344
Q ss_pred HHHH
Q 003000 606 VEVA 609 (859)
Q Consensus 606 v~~A 609 (859)
++.+
T Consensus 231 Lqsl 234 (346)
T KOG0989|consen 231 LQSL 234 (346)
T ss_pred HHHh
Confidence 4433
No 135
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=2.5e-10 Score=130.39 Aligned_cols=213 Identities=17% Similarity=0.223 Sum_probs=137.2
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEE----------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---------- 456 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~---------- 456 (859)
.....|+++.|.+.++..+...+. +-+++..++|+||+|+||||+|+++|..+......
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 456678899898888766655443 12456679999999999999999999987542100
Q ss_pred eecccc------c-----hh--hhcc---cchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHH
Q 003000 457 ISASQF------V-----EI--YVGV---GASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATL 516 (859)
Q Consensus 457 is~s~~------~-----~~--~~g~---~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l 516 (859)
-.|+.. . +. +-+. +...++.+.+.+.. ....+++|||++.+... .+
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~--------------~~ 144 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA--------------AF 144 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH--------------HH
Confidence 011110 0 00 1111 12334444444432 22458999999988543 56
Q ss_pred HHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCC
Q 003000 517 NQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTD 595 (859)
Q Consensus 517 ~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~ 595 (859)
+.|+..++ .....+++|.+|+.+..+-+.+.+ |+. .+.|++++.++....+...+...+.. ++..+..++..+.
T Consensus 145 ~~LLk~LE--ep~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~ 219 (397)
T PRK14955 145 NAFLKTLE--EPPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQ 219 (397)
T ss_pred HHHHHHHh--cCCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 77888887 344566666666667788888877 554 78999999999888888777655432 3334566777775
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 003000 596 GMVGAELANIVEVAAINMMR-DGRTEITTDDLLQAA 630 (859)
Q Consensus 596 G~sgadL~~Lv~~A~~~A~~-~~~~~It~edl~~Al 630 (859)
| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 220 g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 220 G-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred C-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 4 666666777766544422 234579998888765
No 136
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.16 E-value=4.7e-10 Score=124.68 Aligned_cols=135 Identities=21% Similarity=0.209 Sum_probs=95.5
Q ss_pred CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCC-CCCccCCCCCc
Q 003000 486 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGR 553 (859)
Q Consensus 486 p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~-~LdpaLlrpgR 553 (859)
.+++|+||++.+... ++..|+..|+.-. ...++++|+++|..+ .++++++. |
T Consensus 132 ~GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 132 RGILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred CCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--h
Confidence 469999999997554 6677777765321 124688889988765 68999999 9
Q ss_pred ccccccCCCCCH-HHHHHHHHHHHccC-------------------------------CCCCcc--cHHHHHhhCCCCCH
Q 003000 554 FDRKIFIPKPGL-IGRMEILKVHARKK-------------------------------PMADDV--DYLAVASMTDGMVG 599 (859)
Q Consensus 554 fd~~I~~~~Pd~-~eR~~Il~~~l~~~-------------------------------~~~~d~--dl~~lA~~t~G~sg 599 (859)
|...+.++.|+. +++.+|++...... .+.+.+ -+..++..+..-+.
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~ 275 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL 275 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC
Confidence 999999998876 88889988743210 011100 02333444443354
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 600 AELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 600 adL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
+.-..+++-|...|..+|+..|+.+|+..++..+...
T Consensus 276 Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 276 RGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 5555889999999999999999999999998876543
No 137
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.5e-10 Score=125.56 Aligned_cols=196 Identities=25% Similarity=0.349 Sum_probs=136.5
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhccccc-----EEEeeccccchhh---------h------cccc-hhhhhHHHHHH
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISASQFVEIY---------V------GVGA-SRVRSLYQEAK 482 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~~-----~~~is~s~~~~~~---------~------g~~~-~~l~~lfe~a~ 482 (859)
..|.+++++||||||||.+++.++.++... +++|+|-.....| + |... .....+++...
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH
Confidence 345569999999999999999999988443 7899987765441 1 0010 11233444444
Q ss_pred h-cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC---CCCccCCCCCcc-ccc
Q 003000 483 D-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF-DRK 557 (859)
Q Consensus 483 ~-~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~---~LdpaLlrpgRf-d~~ 557 (859)
. ...-|+++||+|.+....+ .++..|+...... ..++.+|+.+|..+ .+||.+.+ +| ...
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~ 184 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSE 184 (366)
T ss_pred hcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcce
Confidence 3 3455889999999976521 3666776655543 56788889988874 68888877 44 345
Q ss_pred ccCCCCCHHHHHHHHHHHHccCC----CCCccc--HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 558 IFIPKPGLIGRMEILKVHARKKP----MADDVD--YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 558 I~~~~Pd~~eR~~Il~~~l~~~~----~~~d~d--l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
|.||+++..+...|+..+..... +.+++- +..++....| ..+-...+++.|+..|.+++...++.+++..|..
T Consensus 185 I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 185 IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 89999999999999998876432 222211 2333455555 4444558999999999999999999999999955
Q ss_pred HHHc
Q 003000 632 IEER 635 (859)
Q Consensus 632 ~~~~ 635 (859)
.+..
T Consensus 264 ~~~~ 267 (366)
T COG1474 264 EIER 267 (366)
T ss_pred HhhH
Confidence 5433
No 138
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=6.1e-10 Score=128.85 Aligned_cols=203 Identities=18% Similarity=0.255 Sum_probs=137.3
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-------------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 453 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------- 453 (859)
....+|+++.|.+..+..+.+.+.. -+++..+||+||+|+|||++|+++|..+...
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 3457899999988888776665542 1346679999999999999999999876332
Q ss_pred ------------EEEeeccccchhhhcccchhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 454 ------------FFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 454 ------------~~~is~s~~~~~~~g~~~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
++.+++.. ..+...++.+.+.+. ...+.|++|||+|.+... ..+
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--------------~~n 139 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--------------AFN 139 (451)
T ss_pred HHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH--------------HHH
Confidence 11111110 001122333333322 234679999999988543 578
Q ss_pred HHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCC
Q 003000 518 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 596 (859)
Q Consensus 518 ~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G 596 (859)
.|+..|+. ..+++++|++||.+..+.+.+.+ |+. .+.|++++.++....+...+...+.. ++..+..|+..+.|
T Consensus 140 ~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888885 44577788788888889999988 654 78999999999999888877665443 33446677777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 597 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 597 ~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.+++.++++..... .+ ..|+.+++..++
T Consensus 215 -dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 215 -SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred -CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 555565666654322 23 349999887765
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=3.4e-10 Score=133.79 Aligned_cols=209 Identities=19% Similarity=0.218 Sum_probs=141.0
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-------EEEe-e
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-S 458 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~-------~~~i-s 458 (859)
.....|+++.|.+.++..+...+.. -+++..++|+||+|+|||++|+++|..+... .+.+ +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 3567899999999888877766542 1345669999999999999999999987532 1111 0
Q ss_pred cccc-----chh--hhc---ccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhc
Q 003000 459 ASQF-----VEI--YVG---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 524 (859)
Q Consensus 459 ~s~~-----~~~--~~g---~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld 524 (859)
|-.+ .+. +-| .+...++.+.+.+.. ..+.|++|||++.+... .++.|+..++
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~--------------a~naLLK~LE 144 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--------------AFNALLKTIE 144 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH--------------HHHHHHHhhc
Confidence 0000 000 011 111234444444332 33569999999988543 6788998888
Q ss_pred cccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHH
Q 003000 525 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 603 (859)
Q Consensus 525 ~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~ 603 (859)
.+..++++|++|+.+..+.+++++ |+. .+.|.+++.++....+...+...++. ++..+..|+..+.| +.+++.
T Consensus 145 --epp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~al 218 (563)
T PRK06647 145 --EPPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAY 218 (563)
T ss_pred --cCCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 455678888777778889999988 664 68899999999999998877655443 23345667777665 777777
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 604 NIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 604 ~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
++++.+...+ + ..|+.+++..++
T Consensus 219 slLdklis~~---~-~~It~e~V~~ll 241 (563)
T PRK06647 219 TLFDQVVSFS---D-SDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 8887665332 2 358888887765
No 140
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.15 E-value=9.6e-11 Score=131.54 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=61.8
Q ss_pred CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc--------ccCCCCeEEEecc----CCCCCCCccCCCCC
Q 003000 485 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG--------FEGRGNVITIAST----NRPDILDPALVRPG 552 (859)
Q Consensus 485 ~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~--------~~~~~~vlVIatT----N~~~~LdpaLlrpg 552 (859)
.-+||||||||++....+. ++.+-...-+...||..+++ ..+..+++||++. ..|..+-|+|.-
T Consensus 249 ~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG-- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 3469999999999865321 11111222377888888887 2346789999766 345667788865
Q ss_pred cccccccCCCCCHHHHHHHHH
Q 003000 553 RFDRKIFIPKPGLIGRMEILK 573 (859)
Q Consensus 553 Rfd~~I~~~~Pd~~eR~~Il~ 573 (859)
||+.++.+.+++.++...||.
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999984
No 141
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.14 E-value=3.5e-10 Score=125.51 Aligned_cols=217 Identities=19% Similarity=0.265 Sum_probs=132.6
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccc-------cc--EEEeec
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-------VN--FFSISA 459 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~-------~~--~~~is~ 459 (859)
.+.|.++.|....+..+.-... ++ | .+++||.|+||+||||+++++++-+. .+ +..+.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~---~~------~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI---DP------G---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh---cc------C---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 4567777787776654432111 00 0 14599999999999999999999873 21 111111
Q ss_pred c----------------ccchhhhcccchhh-h-hHHHHH-------------HhcCCcEEEhhhhHhhhhccCCcCCCC
Q 003000 460 S----------------QFVEIYVGVGASRV-R-SLYQEA-------------KDNAPSVVFIDELDAVGRERGLIKGSG 508 (859)
Q Consensus 460 s----------------~~~~~~~g~~~~~l-~-~lfe~a-------------~~~~p~Il~iDEId~l~~~r~~~~~sg 508 (859)
. .+.....+.+...+ + ..++.. .....+++|+||++.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------- 143 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------- 143 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH--------
Confidence 0 00111111011101 0 001111 0122358999999998654
Q ss_pred chhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCC-CCCccCCCCCcccccccCCCCCH-HHHHHHHHHH
Q 003000 509 GQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKPGL-IGRMEILKVH 575 (859)
Q Consensus 509 ge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~-~LdpaLlrpgRfd~~I~~~~Pd~-~eR~~Il~~~ 575 (859)
+++.|+..|+... ....+++|+|+|..+ .++++++. ||...|.+++|.. ++|.+|+...
T Consensus 144 ------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 144 ------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 6777777775421 235688999999755 58889988 9999999998876 8899999875
Q ss_pred HccCC----C------C--------------------Cccc---HHHHHhhCC-CCCHHHHHHHHHHHHHHHHHhCCCcc
Q 003000 576 ARKKP----M------A--------------------DDVD---YLAVASMTD-GMVGAELANIVEVAAINMMRDGRTEI 621 (859)
Q Consensus 576 l~~~~----~------~--------------------~d~d---l~~lA~~t~-G~sgadL~~Lv~~A~~~A~~~~~~~I 621 (859)
..... + . ++.. +..++..+. .-..++|. +++.|...|...|+..|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V 294 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAV 294 (334)
T ss_pred hcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCee
Confidence 32110 0 0 0100 122233332 23566665 99999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 003000 622 TTDDLLQAAQIEE 634 (859)
Q Consensus 622 t~edl~~Al~~~~ 634 (859)
+.+|+..+...+.
T Consensus 295 ~~~Di~~~~~~vl 307 (334)
T PRK13407 295 GRSHLRSVATMAL 307 (334)
T ss_pred CHHHHHHHHHHhh
Confidence 9999988876554
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=8.7e-10 Score=131.69 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=136.6
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEE---eeccc-
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---ISASQ- 461 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~---is~s~- 461 (859)
+.....|+++.|.+.++..+...+.. -.++..+||+||+|+||||+++++|..+...... ..|+.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 34567899999999888777665542 1245568999999999999999999877432110 00100
Q ss_pred -----cchh----h------hcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHh
Q 003000 462 -----FVEI----Y------VGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 522 (859)
Q Consensus 462 -----~~~~----~------~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ 522 (859)
+... + .......++.+.+.+.. ....|++|||++.+... .++.|+..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~--------------a~naLLk~ 143 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTA--------------AFNALLKT 143 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH--------------HHHHHHHH
Confidence 0000 0 00111223444443332 23469999999988543 67888888
Q ss_pred hccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHH
Q 003000 523 LDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAE 601 (859)
Q Consensus 523 ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgad 601 (859)
|+. ...+++||.+++..+.+.+.+.+ |+. .+.|+.++..+...++...+...++. ++..+..++..+.| +.++
T Consensus 144 LEe--pp~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~ 217 (585)
T PRK14950 144 LEE--PPPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRD 217 (585)
T ss_pred Hhc--CCCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 884 34567777777777778888877 654 68899999999999888877665543 23336677777765 7777
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 602 LANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 602 L~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+.++++..... +...|+.+++...+
T Consensus 218 al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 218 AENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 77777754332 23468888877654
No 143
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=8.4e-10 Score=131.33 Aligned_cols=213 Identities=17% Similarity=0.218 Sum_probs=137.7
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEE----------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---------- 456 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~---------- 456 (859)
.....|+++.|...++..+.+.+. +-+++.++||+||+|+||||+|+.+|+.+......
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 356788899998888776665443 12556779999999999999999999987542100
Q ss_pred eecccc------c-----hh--hhcc---cchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHH
Q 003000 457 ISASQF------V-----EI--YVGV---GASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATL 516 (859)
Q Consensus 457 is~s~~------~-----~~--~~g~---~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l 516 (859)
-.|+.. . +. +.+. +...++.+.+.+.. ....|++|||+|.+... ..
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~--------------a~ 144 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA--------------AF 144 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH--------------HH
Confidence 011110 0 00 1111 12334555444422 23469999999888543 57
Q ss_pred HHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCC-CCcccHHHHHhhCC
Q 003000 517 NQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTD 595 (859)
Q Consensus 517 ~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~lA~~t~ 595 (859)
+.|+..|+. ....+++|.+|+.+..+.+.+.+ |. ..|.|.+++..+....+...+...+. .++..+..|+..+.
T Consensus 145 naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 889988884 44566666666777888888887 44 48999999999988888877765443 23344667777776
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 003000 596 GMVGAELANIVEVAAINMMR-DGRTEITTDDLLQAA 630 (859)
Q Consensus 596 G~sgadL~~Lv~~A~~~A~~-~~~~~It~edl~~Al 630 (859)
| +.+++.+.++.....+.. .....|+.+++.+.+
T Consensus 220 G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 220 G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred C-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 5 566666666655444311 224468888887765
No 144
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.11 E-value=1.1e-09 Score=120.75 Aligned_cols=203 Identities=23% Similarity=0.254 Sum_probs=128.0
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc-----cEEEeec
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISA 459 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-----~~~~is~ 459 (859)
++.....|++..|....+..+...+..- . .++++|+||||+|||++++++++.+.. .++.++.
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-----------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-----------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-----------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 4445567888888877776666554311 1 124899999999999999999998632 3344433
Q ss_pred cccchhhhcccchhhhhHHHH-HHh-----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeE
Q 003000 460 SQFVEIYVGVGASRVRSLYQE-AKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVI 533 (859)
Q Consensus 460 s~~~~~~~g~~~~~l~~lfe~-a~~-----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vl 533 (859)
++... ...+...+.. +.. ..+.+++|||++.+... ....|+..++... .++.
T Consensus 77 ~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~le~~~--~~~~ 134 (319)
T PRK00440 77 SDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------------AQQALRRTMEMYS--QNTR 134 (319)
T ss_pred ccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------------HHHHHHHHHhcCC--CCCe
Confidence 32110 1111122211 211 22458999999887533 3445666666433 3455
Q ss_pred EEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 003000 534 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN 612 (859)
Q Consensus 534 VIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~ 612 (859)
+|.++|.+..+.+.+.+ |+. ++.|++|+.++...+++.++...+.. ++..+..++..+.| +.+.+.+.++.+..
T Consensus 135 lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~- 209 (319)
T PRK00440 135 FILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA- 209 (319)
T ss_pred EEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH-
Confidence 66667777777777877 665 68999999999999999888766543 33456777777755 44444455554332
Q ss_pred HHHhCCCccCHHHHHHHH
Q 003000 613 MMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 613 A~~~~~~~It~edl~~Al 630 (859)
. ...||.+++..++
T Consensus 210 ---~-~~~it~~~v~~~~ 223 (319)
T PRK00440 210 ---T-GKEVTEEAVYKIT 223 (319)
T ss_pred ---c-CCCCCHHHHHHHh
Confidence 2 3469999998875
No 145
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.09 E-value=9.4e-10 Score=123.79 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=131.7
Q ss_pred eEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccC
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~ 502 (859)
-++|+||.|+|||+|++++++.. +..+++++...|...++.....+-..-|.... .-++++||+|+.+.+..
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~- 191 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE- 191 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh-
Confidence 38999999999999999999866 23567777777666554332222122344433 45689999999986541
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC---CCccCCCCCccc--ccccCCCCCHHHHHHHHHHHHc
Q 003000 503 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 503 ~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~---LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
. ....|...+..+...++-+|+.+...|.. +.|.|.+ ||. .++.+.+|+.+.|..|+...+.
T Consensus 192 --------~---~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 192 --------R---TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred --------h---HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 1 12222223333334555677777677765 4578877 775 4678999999999999998776
Q ss_pred cCCCCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 578 KKPMADDVD-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 578 ~~~~~~d~d-l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
..++.-+-+ +..+|.... -+.++|..+++.....+...++ .||.+.+.+++......
T Consensus 259 ~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred hcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 665543333 455565554 5788999999988888777666 79999999999877654
No 146
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.09 E-value=2.3e-10 Score=120.28 Aligned_cols=169 Identities=21% Similarity=0.311 Sum_probs=108.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchhhhcccch-hhhhHHHHHHhcCCcEEEhhhhHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVGRER 501 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~-~l~~lfe~a~~~~p~Il~iDEId~l~~~r 501 (859)
.++|+||+|+|||+|+.++++++ +..++++++.+|...+...... .+..+.+.. ...++++||+++.+...
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc-
Confidence 48999999999999999999865 4567888888877665432221 122222332 35679999999998543
Q ss_pred CCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC---CCccCCCCCccc--ccccCCCCCHHHHHHHHHHHH
Q 003000 502 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHA 576 (859)
Q Consensus 502 ~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~---LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l 576 (859)
.. ....|...++.+...+..+||++...|.. +++.|.+ ||. ..+.+.+|+.+.|..|++..+
T Consensus 113 --------~~---~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 113 --------QR---TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp --------HH---HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred --------hH---HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 11 33444555555455566677777666664 4667777 764 478899999999999999998
Q ss_pred ccCCCCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003000 577 RKKPMADDVD-YLAVASMTDGMVGAELANIVEVAAINM 613 (859)
Q Consensus 577 ~~~~~~~d~d-l~~lA~~t~G~sgadL~~Lv~~A~~~A 613 (859)
...++.-+.+ +..|+.... -+.++|..+++.....+
T Consensus 180 ~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 KERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 8776654444 344555554 47888888888765544
No 147
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.08 E-value=1.3e-09 Score=121.27 Aligned_cols=221 Identities=20% Similarity=0.227 Sum_probs=137.1
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc-------cEEEee--
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSIS-- 458 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-------~~~~is-- 458 (859)
..+.|.++.|.++.+..+..... ++ ..+|++|.|++||||||++++++..+.. +|....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~---~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI---DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 35678888888887755543222 22 1257999999999999999999876521 221000
Q ss_pred ----c-------------------cccchhhhcccchhh------hhHHHHH---------HhcCCcEEEhhhhHhhhhc
Q 003000 459 ----A-------------------SQFVEIYVGVGASRV------RSLYQEA---------KDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 459 ----~-------------------s~~~~~~~g~~~~~l------~~lfe~a---------~~~~p~Il~iDEId~l~~~ 500 (859)
+ ..+...-.+.....+ ...|... .....+++|+||++.+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 0 000000011111111 0111111 1223469999999998655
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhccc-----------cCCCCeEEEeccCCCC-CCCccCCCCCcccccccCCCCC-HHH
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKPG-LIG 567 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~-----------~~~~~vlVIatTN~~~-~LdpaLlrpgRfd~~I~~~~Pd-~~e 567 (859)
+...|+..|+.. .....+++|+|.|..+ .+.++++. ||...|.+..|+ .+.
T Consensus 160 --------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 160 --------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred --------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 666777776531 1234688889888765 58999998 999999999997 588
Q ss_pred HHHHHHHHHccC--CC----------------------------CCccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003000 568 RMEILKVHARKK--PM----------------------------ADDVD---YLAVASMTDGMVGAELANIVEVAAINMM 614 (859)
Q Consensus 568 R~~Il~~~l~~~--~~----------------------------~~d~d---l~~lA~~t~G~sgadL~~Lv~~A~~~A~ 614 (859)
+.+|++...... +. .++.. +..++..+.--+++--..+++.|...|.
T Consensus 224 e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aa 303 (350)
T CHL00081 224 RVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAA 303 (350)
T ss_pred HHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHH
Confidence 999998653211 00 00101 1223333433345555588899999999
Q ss_pred HhCCCccCHHHHHHHHHHHHcC
Q 003000 615 RDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 615 ~~~~~~It~edl~~Al~~~~~g 636 (859)
..|+..|+.+||..++..+...
T Consensus 304 l~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 304 FEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998877554
No 148
>PRK06620 hypothetical protein; Validated
Probab=99.08 E-value=7.3e-10 Score=115.98 Aligned_cols=164 Identities=14% Similarity=0.150 Sum_probs=106.6
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 506 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~ 506 (859)
+.++|+||+|+|||+|+++++...+..+. +.... ....+ ...++++||||+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-----------~~~~~-----~~~d~lliDdi~~~~~------- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-----------NEEIL-----EKYNAFIIEDIENWQE------- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----------chhHH-----hcCCEEEEeccccchH-------
Confidence 56999999999999999999987654222 11100 00111 1336899999984411
Q ss_pred CCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC--CCccCCCCCccc--ccccCCCCCHHHHHHHHHHHHccCCCC
Q 003000 507 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI--LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARKKPMA 582 (859)
Q Consensus 507 sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~--LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l~~~~~~ 582 (859)
..+-.++..+ ...+..+||+++..|.. + |+|++ |+. .++.+.+|+.+.+..+++..+...++.
T Consensus 100 -------~~lf~l~N~~---~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 100 -------PALLHIFNII---NEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred -------HHHHHHHHHH---HhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1222333222 24456677777755554 5 78887 764 468999999999999999887755443
Q ss_pred -CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 583 -DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 583 -~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
++.-+..|+....| +.+.+.++++.....+...+ ..||.+.+.+++
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 33335667777754 67778888887544444444 469998888765
No 149
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=1.2e-09 Score=130.60 Aligned_cols=208 Identities=21% Similarity=0.277 Sum_probs=135.4
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEE----eeccc
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS----ISASQ 461 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~----is~s~ 461 (859)
+.....|+++.|...++..+..++.. -+++.++||+||+|+|||++|+++|+.+...... -.|+.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 34557788999988888777666552 1245579999999999999999999987542110 01110
Q ss_pred --------------cc--hhhhcccchhhhhHHHHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHH
Q 003000 462 --------------FV--EIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 521 (859)
Q Consensus 462 --------------~~--~~~~g~~~~~l~~lfe~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~ 521 (859)
+. ......+...++.+.+.+... ...|++|||+|.+... .++.||.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~--------------a~naLLK 143 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA--------------AFNALLK 143 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHH--------------HHHHHHH
Confidence 00 000112223456666655432 3469999999988543 6788999
Q ss_pred hhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHH
Q 003000 522 CLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGA 600 (859)
Q Consensus 522 ~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sga 600 (859)
.|+ ....++++|++|+.++.+-+.+++ |+ ..+.|+.++.++....+...+.+.+.. ....+..++..+.|. .+
T Consensus 144 ~LE--ePp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~-lr 217 (620)
T PRK14948 144 TLE--EPPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG-LR 217 (620)
T ss_pred HHh--cCCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HH
Confidence 998 445677888778888888889988 65 468888888888877777666554332 223466777777663 46
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003000 601 ELANIVEVAAINMMRDGRTEITTDDLLQA 629 (859)
Q Consensus 601 dL~~Lv~~A~~~A~~~~~~~It~edl~~A 629 (859)
++.++++..... .+ .|+.+++.+.
T Consensus 218 ~A~~lLeklsL~---~~--~It~e~V~~l 241 (620)
T PRK14948 218 DAESLLDQLSLL---PG--PITPEAVWDL 241 (620)
T ss_pred HHHHHHHHHHhc---cC--CCCHHHHHHH
Confidence 666666654322 22 4777666543
No 150
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.06 E-value=3.7e-10 Score=107.87 Aligned_cols=121 Identities=45% Similarity=0.664 Sum_probs=80.3
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchh---hhhHHHHHHhcCCcEEEhhhhHhhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASR---VRSLYQEAKDNAPSVVFIDELDAVGR 499 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~---l~~lfe~a~~~~p~Il~iDEId~l~~ 499 (859)
..+++|+||||+|||++++.++..+ +.+++.+++.............. ....+.......+.++++||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 3469999999999999999999988 78888888876554322111111 01122233345678999999998732
Q ss_pred ccCCcCCCCchhHHHHHHHHHHhhccccC----CCCeEEEeccCCCC--CCCccCCCCCcccccccCCC
Q 003000 500 ERGLIKGSGGQERDATLNQLLVCLDGFEG----RGNVITIASTNRPD--ILDPALVRPGRFDRKIFIPK 562 (859)
Q Consensus 500 ~r~~~~~sgge~~r~~l~~LL~~ld~~~~----~~~vlVIatTN~~~--~LdpaLlrpgRfd~~I~~~~ 562 (859)
. ....++..+..... ..++.+|+++|... .+++.+.+ ||+..|.+++
T Consensus 99 ~--------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 99 G--------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H--------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 2 22334444443322 46788888888777 67777776 9987777763
No 151
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=5.2e-10 Score=135.13 Aligned_cols=232 Identities=18% Similarity=0.168 Sum_probs=128.8
Q ss_pred hhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhch
Q 003000 286 TVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQF 365 (859)
Q Consensus 286 ~~i~~l~~~~~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~ 365 (859)
+.+..+ ..|.+..|.|+|+.|..+++ ++.....++++.++.++++++..+.+....+. . .+.....
T Consensus 214 d~i~~L-~~G~i~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~---~--------~~~a~~r 279 (638)
T PRK10636 214 DKIIHI-EQQSLFEYTGNYSSFEVQRA--TRLAQQQAMYESQQERVAHLQSYIDRFRAKAT---K--------AKQAQSR 279 (638)
T ss_pred CEEEEE-eCCEEEEecCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---h--------HHHHHHH
Confidence 444445 56788899999999998776 34444455566666666666666553221000 0 0000000
Q ss_pred hhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHH
Q 003000 366 MKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLA 443 (859)
Q Consensus 366 ~~i~~~vs~~tgip~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLa 443 (859)
.+....+.. +. +........+.|+.....++.++.++++...|.+..++.++++.+..| +.|+||||+|||||+
T Consensus 280 ~~~l~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLl 355 (638)
T PRK10636 280 IKMLERMEL---IA-PAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLI 355 (638)
T ss_pred HHHHHHhhc---cc-ccccCCceeEecCCCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHH
Confidence 011111110 00 000011233444433333455666777777776666788899998888 999999999999999
Q ss_pred HhhhhcccccEEEeecccc-chhhhcccc-hhh---hhHHHHHHhcCCcEEEhhhhHhhhhccCC---------cCCCCc
Q 003000 444 KAVAGEAGVNFFSISASQF-VEIYVGVGA-SRV---RSLYQEAKDNAPSVVFIDELDAVGRERGL---------IKGSGG 509 (859)
Q Consensus 444 kaLA~el~~~~~~is~s~~-~~~~~g~~~-~~l---~~lfe~a~~~~p~Il~iDEId~l~~~r~~---------~~~sgg 509 (859)
++|+|.+.+..|.|..+.- .-.|+.+.. ..+ ..+++......+.. .-..+..++...++ ..-|||
T Consensus 356 k~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 434 (638)
T PRK10636 356 KLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQE-LEQKLRDYLGGFGFQGDKVTEETRRFSGG 434 (638)
T ss_pred HHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchh-hHHHHHHHHHHcCCChhHhcCchhhCCHH
Confidence 9999998777676655321 112333321 111 12233222212211 11223333322222 122999
Q ss_pred hhHHHHHHHHHHhhccccCCCCeEEE-eccCCCC
Q 003000 510 QERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 542 (859)
Q Consensus 510 e~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~ 542 (859)
++.+..+..++ ....+++++ .+||+.|
T Consensus 435 ekqRl~La~~l------~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 435 EKARLVLALIV------WQRPNLLLLDEPTNHLD 462 (638)
T ss_pred HHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 99999998888 456788888 8888755
No 152
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.05 E-value=2.4e-10 Score=115.41 Aligned_cols=110 Identities=33% Similarity=0.373 Sum_probs=74.3
Q ss_pred eEEEECCCCCCchhHHHhhhhcccc----cEEEeeccccchhhhcccchhhhhHHHH----HHhcCCcEEEhhhhHhhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGV----NFFSISASQFVEIYVGVGASRVRSLYQE----AKDNAPSVVFIDELDAVGR 499 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~----~~~~is~s~~~~~~~g~~~~~l~~lfe~----a~~~~p~Il~iDEId~l~~ 499 (859)
.++|+||+|||||.|+++||..+.. +++.++++.+....- ....+..++.. .......||+|||||++++
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 4899999999999999999999986 999999999876100 00111111111 1111224999999999987
Q ss_pred ccCCcCCCCchhHHHHHHHHHHhhccc---------cCCCCeEEEeccCCCC
Q 003000 500 ERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD 542 (859)
Q Consensus 500 ~r~~~~~sgge~~r~~l~~LL~~ld~~---------~~~~~vlVIatTN~~~ 542 (859)
. .+...+.....+++.||+.|++. .+..+++||+|+|.-.
T Consensus 83 ~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 S---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp T---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred c---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 5 12233334446888899888751 2346899999998754
No 153
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=2.9e-09 Score=127.31 Aligned_cols=203 Identities=19% Similarity=0.271 Sum_probs=136.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-------------
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 453 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------- 453 (859)
.....|+++.|....+..+...+.. -.++..+||+||+|+|||++++++|..+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 3557899999988887777665541 2356679999999999999999999976421
Q ss_pred ------------EEEeeccccchhhhcccchhhhhHHHHHHhcC----CcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 454 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 454 ------------~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~----p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
+..+++++ ......++.+.+.+...+ ..|++|||++.+... .++
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~--------------a~n 139 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA--------------AFN 139 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--------------HHH
Confidence 11111110 011223455555554332 458999999888543 678
Q ss_pred HHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhhCCC
Q 003000 518 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDG 596 (859)
Q Consensus 518 ~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~t~G 596 (859)
.|+..|+. ...++++|.+|+....|-+.|++ |+ .++.|.+++..+....+...+...++.-+ ..+..|+..+.
T Consensus 140 aLLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~- 213 (614)
T PRK14971 140 AFLKTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD- 213 (614)
T ss_pred HHHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 89998884 44567777777777888899988 55 47999999999999999887776655433 34667777775
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 597 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 597 ~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
.+.+++.++++.....+ +.. |+.+++.+.+
T Consensus 214 gdlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 214 GGMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred CCHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 46666666666544332 322 7776665543
No 154
>PRK09087 hypothetical protein; Validated
Probab=99.02 E-value=1.3e-09 Score=115.18 Aligned_cols=171 Identities=18% Similarity=0.162 Sum_probs=111.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCC
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 507 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~s 507 (859)
.++|+||+|+|||+|+++++...+.. +++...+... ++..... .+++||+++.+...
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~------- 102 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD------- 102 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC-------
Confidence 38999999999999999999875443 3333322221 2222211 47889999865211
Q ss_pred CchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC---CCccCCCCCccc--ccccCCCCCHHHHHHHHHHHHccCCCC
Q 003000 508 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARKKPMA 582 (859)
Q Consensus 508 gge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~---LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l~~~~~~ 582 (859)
+ ..|...++.+...+..+||+++..|.. ..|.|++ ||. .++.+.+|+.+.|..|++.++....+.
T Consensus 103 --~------~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 103 --E------TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred --H------HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 123333333334455677766655543 3678888 774 788999999999999999998776543
Q ss_pred -CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003000 583 -DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 583 -~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~ 633 (859)
++..+..|+....| +.+.+..+++.....+...++ .||...+.+++..+
T Consensus 173 l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~~-~it~~~~~~~l~~~ 222 (226)
T PRK09087 173 VDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERKS-RITRALAAEVLNEM 222 (226)
T ss_pred CCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhh
Confidence 33346677777763 555666666666555555554 59999999998754
No 155
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.02 E-value=4.3e-09 Score=110.50 Aligned_cols=192 Identities=22% Similarity=0.334 Sum_probs=129.1
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccc
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFV 463 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~ 463 (859)
...+.+++..|++..+..+.+-...+.. -.+..++||+|+.|||||+++|++..+. |..++.+...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 3467788889999888777655544321 1234569999999999999999999866 6667777665543
Q ss_pred hhhhcccchhhhhHHHHHHhcC-CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc--CCCCeEEEeccCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTNR 540 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~-p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--~~~~vlVIatTN~ 540 (859)
. +..+++.++..+ .-|||+|++- +-. ++ .....|-..|++-. ...||+|.+|+|+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe~---------~d---~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-FEE---------GD---TEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-CCC---------Cc---HHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 2 344666666443 4589999863 111 11 13455556666633 3578999999998
Q ss_pred CCCCCccC----------CCC-----------CcccccccCCCCCHHHHHHHHHHHHccCCCCCcc-c----HHHHHhhC
Q 003000 541 PDILDPAL----------VRP-----------GRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV-D----YLAVASMT 594 (859)
Q Consensus 541 ~~~LdpaL----------lrp-----------gRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~-d----l~~lA~~t 594 (859)
-+.++..+ +.+ .||+..|.|.+|+.++-.+|++.++...++.-+. + ...+|...
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 65432211 111 3999999999999999999999999876655431 2 23455666
Q ss_pred CCCCHHHHHHHHHH
Q 003000 595 DGMVGAELANIVEV 608 (859)
Q Consensus 595 ~G~sgadL~~Lv~~ 608 (859)
.|.||+-..+.++.
T Consensus 231 g~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 231 GGRSGRTARQFIDD 244 (249)
T ss_pred CCCCHHHHHHHHHH
Confidence 67788777666653
No 156
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=5.9e-09 Score=112.27 Aligned_cols=189 Identities=13% Similarity=0.182 Sum_probs=114.9
Q ss_pred EEEECCCCCCchhHHHhhhhccccc-EEE--e-ec----cccchh---hhcccch------hhhhHH----HHHHhcCCc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVN-FFS--I-SA----SQFVEI---YVGVGAS------RVRSLY----QEAKDNAPS 487 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~-~~~--i-s~----s~~~~~---~~g~~~~------~l~~lf----e~a~~~~p~ 487 (859)
++|+||||+||||+++.+++.+... +.. + +. .++... .+|.... .+..+. .......+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 125 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRA 125 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence 8899999999999999999987532 111 1 11 111100 1121110 011222 222345567
Q ss_pred EEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc--CCCCCCC-c---cCCCCCcccccccCC
Q 003000 488 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILD-P---ALVRPGRFDRKIFIP 561 (859)
Q Consensus 488 Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT--N~~~~Ld-p---aLlrpgRfd~~I~~~ 561 (859)
+++|||++.+... ....+..|..... .....+.|+.+. ...+.+. + .+.+ |+...+.++
T Consensus 126 vliiDe~~~l~~~-----------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 126 LLVVDEAQNLTPE-----------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred EEEEECcccCCHH-----------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 9999999887432 1112222221111 112223333332 2222221 1 2434 777788999
Q ss_pred CCCHHHHHHHHHHHHccCCC-----CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003000 562 KPGLIGRMEILKVHARKKPM-----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 562 ~Pd~~eR~~Il~~~l~~~~~-----~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~ 633 (859)
+.+.++...++...+...+. -.+..+..|...+.|.... |..+++.+...|...+...|+.+++..++..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 99999999999988764321 2334577888999988655 99999999999999999999999999998754
No 157
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.98 E-value=1.5e-09 Score=131.11 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=125.7
Q ss_pred hhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhch
Q 003000 286 TVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQF 365 (859)
Q Consensus 286 ~~i~~l~~~~~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~ 365 (859)
+.+..+ ..|.+..|.|||+.|..+++. +......+++.+.+++++++..+.+ . .++... +.....+.
T Consensus 221 d~i~~L-~~G~i~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~a~~~--~~~~r~~~---- 287 (635)
T PRK11147 221 TRIVDL-DRGKLVSYPGNYDQYLLEKEE--ALRVEELQNAEFDRKLAQEEVWIRQ-G---IKARRT--RNEGRVRA---- 287 (635)
T ss_pred CeEEEE-ECCEEEEecCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh-h---hhhhhh--hHHHHHHH----
Confidence 444444 567788899999999988773 2323334444444555555554442 1 000000 00000000
Q ss_pred hhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHH
Q 003000 366 MKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLA 443 (859)
Q Consensus 366 ~~i~~~vs~~tgip~~~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLa 443 (859)
...+... .+. +........+.|+.....++.++.++++...|.+..++.++++.+..| +.|+||||+|||||+
T Consensus 288 ---~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLl 362 (635)
T PRK11147 288 ---LKALRRE-RSE-RREVMGTAKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLL 362 (635)
T ss_pred ---HHHhhhh-hcc-ccccCCceeEEeCCCCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHH
Confidence 0111000 000 000012233444433334455666777777776666788899998888 999999999999999
Q ss_pred HhhhhcccccEEEeeccccc-hhhhcccchhh---hhHHHHHHhcCCcEEE---hhhhHhhhhccCC---------cCCC
Q 003000 444 KAVAGEAGVNFFSISASQFV-EIYVGVGASRV---RSLYQEAKDNAPSVVF---IDELDAVGRERGL---------IKGS 507 (859)
Q Consensus 444 kaLA~el~~~~~~is~s~~~-~~~~g~~~~~l---~~lfe~a~~~~p~Il~---iDEId~l~~~r~~---------~~~s 507 (859)
++|+|.+.+..+.|..+.-. -.|+.+....+ ..+++.+....+.... -.++..++...++ ..-|
T Consensus 363 k~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 442 (635)
T PRK11147 363 KLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALS 442 (635)
T ss_pred HHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCC
Confidence 99999987777776653211 12444322111 1344443321111000 1123332222221 1229
Q ss_pred CchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCC
Q 003000 508 GGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 542 (859)
Q Consensus 508 gge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~ 542 (859)
||++.+..+..++ ....+++++ .+||+.|
T Consensus 443 gGekqRl~la~al------~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 443 GGERNRLLLARLF------LKPSNLLILDEPTNDLD 472 (635)
T ss_pred HHHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 9999999998888 456788888 8888754
No 158
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.96 E-value=2.9e-09 Score=118.74 Aligned_cols=128 Identities=32% Similarity=0.457 Sum_probs=90.4
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh--hhcccchh----------h--hhHHHHHHhcCCcEEEh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGASR----------V--RSLYQEAKDNAPSVVFI 491 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~--~~g~~~~~----------l--~~lfe~a~~~~p~Il~i 491 (859)
.+.++|.||||||||+|++.+|..++.+++++.|...... .+|...-. + +-+|.... +++++
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 3458999999999999999999999999999999865543 11110000 0 11222222 49999
Q ss_pred hhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc----------ccCCCCeEEEeccCC-----CCCCCccCCCCCcccc
Q 003000 492 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDG----------FEGRGNVITIASTNR-----PDILDPALVRPGRFDR 556 (859)
Q Consensus 492 DEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~----------~~~~~~vlVIatTN~-----~~~LdpaLlrpgRfd~ 556 (859)
|||+...+. +.+.|+..|+. +.-...++||+|+|. ...+++++++ ||..
T Consensus 119 DEInra~p~--------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 119 DEINRAPPE--------------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred eccccCCHH--------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 999988655 77788877775 223356889999994 3458899998 9988
Q ss_pred cccCCCCCHHHHHHHHH
Q 003000 557 KIFIPKPGLIGRMEILK 573 (859)
Q Consensus 557 ~I~~~~Pd~~eR~~Il~ 573 (859)
.++++.|+..+-..++.
T Consensus 183 ~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 183 RIYVDYPDSEEEERIIL 199 (329)
T ss_pred EEecCCCCchHHHHHHH
Confidence 99999995444444333
No 159
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.95 E-value=8.3e-09 Score=124.37 Aligned_cols=190 Identities=21% Similarity=0.255 Sum_probs=121.3
Q ss_pred ceEEEECCCCCCchhHHHhhhhccc-----------------------------------ccEEEeeccccchhhhcccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAG-----------------------------------VNFFSISASQFVEIYVGVGA 471 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~-----------------------------------~~~~~is~s~~~~~~~g~~~ 471 (859)
+|++|.|++|||||+++++|+..+. .+|+.+.++......+|...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 4699999999999999999998762 34444444332222222110
Q ss_pred hhhhhHH-------H--HHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCC
Q 003000 472 SRVRSLY-------Q--EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGN 531 (859)
Q Consensus 472 ~~l~~lf-------e--~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~ 531 (859)
+...+ + .+.....+++|||||+.+... +++.|+..|+.-. ...+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLSVSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCceeeecCC
Confidence 00000 0 001123469999999998655 7788888776321 1246
Q ss_pred eEEEeccCCC-CCCCccCCCCCcccccccCCCCC-HHHHHHHHHHHHcc-------------------------------
Q 003000 532 VITIASTNRP-DILDPALVRPGRFDRKIFIPKPG-LIGRMEILKVHARK------------------------------- 578 (859)
Q Consensus 532 vlVIatTN~~-~~LdpaLlrpgRfd~~I~~~~Pd-~~eR~~Il~~~l~~------------------------------- 578 (859)
++||+|+|.. ..+.++|+. ||+..|.++.|. .+++.+|+...+..
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~ 247 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPS 247 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCC
Confidence 8999999964 358889988 999989888764 56677777643210
Q ss_pred CCCCCcccHHHHHhhC--CCC-CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 003000 579 KPMADDVDYLAVASMT--DGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 635 (859)
Q Consensus 579 ~~~~~d~dl~~lA~~t--~G~-sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 635 (859)
..+ ++..+..++..+ -|. +.+....+++-|...|...++..|+.+||..|+..+..
T Consensus 248 V~i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 248 VRI-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLP 306 (633)
T ss_pred CCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhh
Confidence 001 111122222221 234 34455578888888999999999999999999987753
No 160
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.95 E-value=3.7e-09 Score=108.14 Aligned_cols=145 Identities=23% Similarity=0.315 Sum_probs=98.5
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhccccc------------------------EEEeeccccchhhhcccchhhhhHHH
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------------FFSISASQFVEIYVGVGASRVRSLYQ 479 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------------------~~~is~s~~~~~~~g~~~~~l~~lfe 479 (859)
+++..+||+||+|+|||++++.++..+... +..+..... ..+...++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-----~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-----SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-----cCCHHHHHHHHH
Confidence 456679999999999999999999876321 111111100 011133444555
Q ss_pred HHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCccc
Q 003000 480 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 555 (859)
Q Consensus 480 ~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd 555 (859)
.+.. ....|++|||+|.+... ..+.|+..|+. ...++++|.+||.+..+.+++.+ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~- 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RC- 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hc-
Confidence 5543 23468999999998654 57788888885 34566677777777899999988 65
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCC
Q 003000 556 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGM 597 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~ 597 (859)
..+.|++|+.++..+++... ++. +..+..++..+.|.
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGGS 184 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCCC
Confidence 48999999999998888776 232 33456666666653
No 161
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.94 E-value=4.9e-10 Score=108.68 Aligned_cols=109 Identities=32% Similarity=0.464 Sum_probs=71.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh--hhcccc---h--hh--hhHHHHHHhcCCcEEEhhhhHhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGA---S--RV--RSLYQEAKDNAPSVVFIDELDAVG 498 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~--~~g~~~---~--~l--~~lfe~a~~~~p~Il~iDEId~l~ 498 (859)
+|+|+||||||||+|++.+|..++.++..+.++..... .+|.-. . .+ ..+...+. .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 48999999999999999999999999999988775433 111100 0 00 11111111 56799999999876
Q ss_pred hccCCcCCCCchhHHHHHHHHHHhhcccc-----------CCC------CeEEEeccCCCC----CCCccCCCCCcc
Q 003000 499 RERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRG------NVITIASTNRPD----ILDPALVRPGRF 554 (859)
Q Consensus 499 ~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~------~vlVIatTN~~~----~LdpaLlrpgRf 554 (859)
+. ++..|+..++.-. ... ++.||+|+|..+ .++++|++ ||
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 44 6666666555410 011 489999999998 79999998 76
No 162
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.94 E-value=1.1e-08 Score=120.45 Aligned_cols=190 Identities=16% Similarity=0.146 Sum_probs=120.0
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEe----eccccchhhhcc-cchhhhhHHH--HHHhcCCcEEEhhhhHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI----SASQFVEIYVGV-GASRVRSLYQ--EAKDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~i----s~s~~~~~~~g~-~~~~l~~lfe--~a~~~~p~Il~iDEId~l~~~ 500 (859)
++||+|+||||||+++++++.......+.. ++..+....+.. ..+.. .++ .......++++|||++.+...
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~ 315 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF--TLEGGALVLADNGVCCIDEFDKMDDS 315 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE--EecCccEEecCCCEEEEechhhCCHH
Confidence 599999999999999999998764332211 111111100000 00000 000 011223569999999998654
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCC-------------CCCccCCCCCcccc
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRFDR 556 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~-------------~LdpaLlrpgRfd~ 556 (859)
....|+..|+.-. -+.++.||+|+|+.. .|++++++ |||.
T Consensus 316 --------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdL 379 (509)
T smart00350 316 --------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDL 379 (509)
T ss_pred --------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceee
Confidence 5566666664311 125688999999763 48999999 9998
Q ss_pred cc-cCCCCCHHHHHHHHHHHHccCC-----------------------------C---CCcccHHHHH-----hh-----
Q 003000 557 KI-FIPKPGLIGRMEILKVHARKKP-----------------------------M---ADDVDYLAVA-----SM----- 593 (859)
Q Consensus 557 ~I-~~~~Pd~~eR~~Il~~~l~~~~-----------------------------~---~~d~dl~~lA-----~~----- 593 (859)
.+ ....|+.+....|.++.+.... + ..+.....+. .+
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~ 459 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQ 459 (509)
T ss_pred EEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccc
Confidence 65 4467888888888876432110 0 0000001110 01
Q ss_pred -----CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 003000 594 -----TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 635 (859)
Q Consensus 594 -----t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 635 (859)
..+.|++.+..|++-|...|..+++..|+.+|+..|+..+..
T Consensus 460 ~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 460 SEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred cccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 235689999999999999999999999999999999987653
No 163
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.94 E-value=8.5e-09 Score=123.09 Aligned_cols=192 Identities=20% Similarity=0.221 Sum_probs=125.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccc--cEEEeeccccchhhhcccc--hhh--hh-HHHH--HHhcCCcEEEhhhhHhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGA--SRV--RS-LYQE--AKDNAPSVVFIDELDAV 497 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~--~~~~is~s~~~~~~~g~~~--~~l--~~-lfe~--a~~~~p~Il~iDEId~l 497 (859)
++|+|.|++|||||+++++|+..++. +|+.+..+......+|... ..+ .. .|+. +.....+++|+|||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 46999999999999999999997753 5887775433332333210 000 00 0000 01123468999999998
Q ss_pred hhccCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCC---CCCccCCCCCcccccccCC-C
Q 003000 498 GRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD---ILDPALVRPGRFDRKIFIP-K 562 (859)
Q Consensus 498 ~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~---~LdpaLlrpgRfd~~I~~~-~ 562 (859)
.+. +++.|+..|+.-. ...++.||+|+|..+ .+.++|+. ||+.+|.+. .
T Consensus 97 ~~~--------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 97 DDG--------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred CHH--------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 765 7788888776421 124688999999875 68889998 999887665 4
Q ss_pred CCHHHHHHHHHHHHccC-------------------------CCCCcccHHHHHhh--CCCCC-HHHHHHHHHHHHHHHH
Q 003000 563 PGLIGRMEILKVHARKK-------------------------PMADDVDYLAVASM--TDGMV-GAELANIVEVAAINMM 614 (859)
Q Consensus 563 Pd~~eR~~Il~~~l~~~-------------------------~~~~d~dl~~lA~~--t~G~s-gadL~~Lv~~A~~~A~ 614 (859)
|+..+|.+|++..+... .+. +..+..++.. .-|.+ .+....+++-|...|.
T Consensus 161 ~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~-~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aa 239 (589)
T TIGR02031 161 ASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTIS-AEQVKELVLTAASLGISGHRADLFAVRAAKAHAA 239 (589)
T ss_pred CCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCC-HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence 57777888887654211 111 1112222221 22333 3444478888888999
Q ss_pred HhCCCccCHHHHHHHHHHHHc
Q 003000 615 RDGRTEITTDDLLQAAQIEER 635 (859)
Q Consensus 615 ~~~~~~It~edl~~Al~~~~~ 635 (859)
.++++.|+.+|+..|+..+..
T Consensus 240 l~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 240 LHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HhCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999987753
No 164
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.93 E-value=7.8e-09 Score=118.47 Aligned_cols=194 Identities=18% Similarity=0.228 Sum_probs=116.0
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccc--cEEEeecc-ccchhhhccc-chhh--hhHHHHHHhc---CCcEEEhhhhHh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISAS-QFVEIYVGVG-ASRV--RSLYQEAKDN---APSVVFIDELDA 496 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~--~~~~is~s-~~~~~~~g~~-~~~l--~~lfe~a~~~---~p~Il~iDEId~ 496 (859)
..+++|+||||||||++|++|+...+. +|..+.+. ......+|.. .... ..-|...... ...++|+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 345999999999999999999986642 33333222 0112222211 0000 1112211111 234899999987
Q ss_pred hhhccCCcCCCCchhHHHHHHHHHHhhcccc-CC-------CCeEEEeccCCCCC---CCccCCCCCcccccccCCCCC-
Q 003000 497 VGRERGLIKGSGGQERDATLNQLLVCLDGFE-GR-------GNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKPG- 564 (859)
Q Consensus 497 l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-~~-------~~vlVIatTN~~~~---LdpaLlrpgRfd~~I~~~~Pd- 564 (859)
+.+. +++.||..|..-. .. +--++++|||.... ..++++. ||-..|.+|+|+
T Consensus 119 asp~--------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 119 AGPA--------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred CCHH--------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 7654 7888888884311 11 11344455575432 3358888 998889999997
Q ss_pred HHHHHHHHHHHHcc--CCCC-----Cccc--------------------HHHHHhh---C---CCCCHHHHHHHHHHHHH
Q 003000 565 LIGRMEILKVHARK--KPMA-----DDVD--------------------YLAVASM---T---DGMVGAELANIVEVAAI 611 (859)
Q Consensus 565 ~~eR~~Il~~~l~~--~~~~-----~d~d--------------------l~~lA~~---t---~G~sgadL~~Lv~~A~~ 611 (859)
.++..+|+...... .+.. ...+ +..|... + ...|++--..+++-|..
T Consensus 183 ~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA 262 (498)
T PRK13531 183 KANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQA 262 (498)
T ss_pred hHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHH
Confidence 45557787653221 1110 0000 1122321 2 23788888899999999
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 612 NMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 612 ~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
.|...|+..|+.+|+. .+.-+.+.
T Consensus 263 ~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 263 SAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 9999999999999999 66665554
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.93 E-value=2.4e-09 Score=101.01 Aligned_cols=123 Identities=35% Similarity=0.481 Sum_probs=78.6
Q ss_pred ceEEEECCCCCCchhHHHhhhhccccc---EEEeeccccchhh--------------hcccchhhhhHHHHHHhcCCcEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEIY--------------VGVGASRVRSLYQEAKDNAPSVV 489 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~---~~~is~s~~~~~~--------------~g~~~~~l~~lfe~a~~~~p~Il 489 (859)
..++|+|||||||||+++.+|..+... ++.++++...... .......+..+++.+....++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 458999999999999999999998765 7777776543321 11223344667777877778999
Q ss_pred EhhhhHhhhhccCCcCCCCchhHHHHHHHHHH-----hhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCC
Q 003000 490 FIDELDAVGRERGLIKGSGGQERDATLNQLLV-----CLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 563 (859)
Q Consensus 490 ~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~-----~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~P 563 (859)
++||++.+..... ...... .........+..+|+++|......+..+++ |++..+.++.+
T Consensus 83 iiDei~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-------------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-------------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999998865421 010100 011112345678888888633333333333 78888777654
No 166
>PHA02244 ATPase-like protein
Probab=98.91 E-value=1.9e-08 Score=111.75 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=82.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh--hhcc--cchhh--hhHHHHHHhcCCcEEEhhhhHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGV--GASRV--RSLYQEAKDNAPSVVFIDELDAVGRER 501 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~--~~g~--~~~~l--~~lfe~a~~~~p~Il~iDEId~l~~~r 501 (859)
.++|+||||||||+||++||..++.+++.++.. ... ..|. ....+ ..++..+ ..+++++|||++.+.+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~- 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE- 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH-
Confidence 489999999999999999999999999988742 111 1110 00111 1233332 34679999999987654
Q ss_pred CCcCCCCchhHHHHHHHHHHhhcc---------ccCCCCeEEEeccCCC-----------CCCCccCCCCCcccccccCC
Q 003000 502 GLIKGSGGQERDATLNQLLVCLDG---------FEGRGNVITIASTNRP-----------DILDPALVRPGRFDRKIFIP 561 (859)
Q Consensus 502 ~~~~~sgge~~r~~l~~LL~~ld~---------~~~~~~vlVIatTN~~-----------~~LdpaLlrpgRfd~~I~~~ 561 (859)
++..|...++. +....++.+|+|+|.+ ..+++++++ ||- .|+|+
T Consensus 196 -------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 196 -------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred -------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 44444444432 2234678999999973 457899998 995 68999
Q ss_pred CCCHHHHHHHH
Q 003000 562 KPGLIGRMEIL 572 (859)
Q Consensus 562 ~Pd~~eR~~Il 572 (859)
.|+. .-..|+
T Consensus 260 yp~~-~E~~i~ 269 (383)
T PHA02244 260 YDEK-IEHLIS 269 (383)
T ss_pred CCcH-HHHHHh
Confidence 8873 333444
No 167
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.91 E-value=1.8e-08 Score=109.15 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=92.2
Q ss_pred CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCC------------CCCCCccCCCCCc
Q 003000 486 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR------------PDILDPALVRPGR 553 (859)
Q Consensus 486 p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~------------~~~LdpaLlrpgR 553 (859)
|+|+||||++-+.-. .+..|-..|+. .... +||++||+ |+.++..|+. |
T Consensus 292 pGVLFIDEvHmLDIE--------------~FsFlnrAlEs--e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHMLDIE--------------CFSFLNRALES--ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhhhHH--------------HHHHHHHHhhc--ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 667888887766332 33444444442 1222 56677775 4567777776 5
Q ss_pred ccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003000 554 FDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 554 fd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~ 632 (859)
+ .+|...+++.++..+|++..+....+. ++.-++.|+.....-|-+-..+|+.-|...|.++++..|..+|+..|...
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 4 366778899999999999998776554 33346777777777777777899999999999999999999999999776
Q ss_pred HH
Q 003000 633 EE 634 (859)
Q Consensus 633 ~~ 634 (859)
..
T Consensus 432 F~ 433 (450)
T COG1224 432 FL 433 (450)
T ss_pred Hh
Confidence 53
No 168
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.85 E-value=1.6e-08 Score=117.97 Aligned_cols=186 Identities=23% Similarity=0.250 Sum_probs=114.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEE--Eeeccc------------------cc--------hhhhcccchhhhhHH
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFF--SISASQ------------------FV--------EIYVGVGASRVRSLY 478 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~--~is~s~------------------~~--------~~~~g~~~~~l~~lf 478 (859)
..++|+||||||||+|++.+++.+.+..+ .+.... |. ...+|.+...-...+
T Consensus 212 ~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i 291 (499)
T TIGR00368 212 HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEI 291 (499)
T ss_pred CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhh
Confidence 34999999999999999999986532111 011111 00 001111100000011
Q ss_pred HHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCC------
Q 003000 479 QEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRP------ 541 (859)
Q Consensus 479 e~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~------ 541 (859)
.....+++||||++.+... ++..|++.|+... -..++.+|+++|.-
T Consensus 292 ---~lA~~GvLfLDEi~e~~~~--------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~ 354 (499)
T TIGR00368 292 ---SLAHNGVLFLDELPEFKRS--------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYG 354 (499)
T ss_pred ---hccCCCeEecCChhhCCHH--------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCC
Confidence 2233469999999987544 6777777765421 12568999999862
Q ss_pred C-----------------CCCccCCCCCcccccccCCCCCHHHH-------------HHHHHH------HHccC---CCC
Q 003000 542 D-----------------ILDPALVRPGRFDRKIFIPKPGLIGR-------------MEILKV------HARKK---PMA 582 (859)
Q Consensus 542 ~-----------------~LdpaLlrpgRfd~~I~~~~Pd~~eR-------------~~Il~~------~l~~~---~~~ 582 (859)
+ .+...|+. |||.++.++.++..+. ..+.+. .+... ...
T Consensus 355 ~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N 432 (499)
T TIGR00368 355 GKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKN 432 (499)
T ss_pred CCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 1 37778888 9999999997754432 223221 11111 111
Q ss_pred Cccc----------------HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 583 DDVD----------------YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 583 ~d~d----------------l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
..+. +..-+....++|.+....+++-|...|...+...|+.+|+.+|+.
T Consensus 433 ~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 433 ADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred ccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 1111 111123344689999999999999999999999999999999974
No 169
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1e-08 Score=109.62 Aligned_cols=95 Identities=34% Similarity=0.574 Sum_probs=69.4
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh-hhcccchhh-hhHHHHH----HhcCCcEEEhhhhHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV-RSLYQEA----KDNAPSVVFIDELDAVGRER 501 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~-~~g~~~~~l-~~lfe~a----~~~~p~Il~iDEId~l~~~r 501 (859)
++||+||+|||||.||+.||..+++||...++..+.+. |+|....++ ..+.+.+ .+...+|++|||||++....
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkS 178 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKS 178 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC
Confidence 39999999999999999999999999999999887764 888877665 3444432 22335699999999997542
Q ss_pred C---CcCCCCchhHHHHHHHHHHhhcc
Q 003000 502 G---LIKGSGGQERDATLNQLLVCLDG 525 (859)
Q Consensus 502 ~---~~~~sgge~~r~~l~~LL~~ld~ 525 (859)
. ...+-.|+. +...||..+++
T Consensus 179 eN~SITRDVSGEG---VQQALLKiiEG 202 (408)
T COG1219 179 ENPSITRDVSGEG---VQQALLKIIEG 202 (408)
T ss_pred CCCCcccccCchH---HHHHHHHHHcC
Confidence 1 112223333 56667777776
No 170
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.5e-08 Score=112.67 Aligned_cols=152 Identities=24% Similarity=0.376 Sum_probs=103.4
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcccc------------------------cEEEeeccccchhhhcccchhhhhHH
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------------------NFFSISASQFVEIYVGVGASRVRSLY 478 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~------------------------~~~~is~s~~~~~~~g~~~~~l~~lf 478 (859)
-+.+.++||+||+|+|||++|+.+|..+-. ++..+....- . -.-....++.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 355777999999999999999999986632 1122211100 0 001123445555
Q ss_pred HHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcc
Q 003000 479 QEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRF 554 (859)
Q Consensus 479 e~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRf 554 (859)
+.+.. ....|++||++|.+... ..|.||..|+ .+..++++|.+|+.++.+.|.+++ |+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LE--EPp~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLE--EPSGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHh--CCCCCeEEEEEECChhhCcHHHHh--hc
Confidence 55443 33568999999998655 7899999999 456788999999999999999999 66
Q ss_pred cccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCH
Q 003000 555 DRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 599 (859)
Q Consensus 555 d~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sg 599 (859)
. .+.|++|+.++....+...... ..+.+...++..+.|-.+
T Consensus 158 ~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 158 Q-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred e-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 4 5899999999888887755321 122334455666665443
No 171
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.4e-08 Score=110.53 Aligned_cols=172 Identities=16% Similarity=0.267 Sum_probs=113.4
Q ss_pred cccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc--------cEEEeecccc
Q 003000 391 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV--------NFFSISASQF 462 (859)
Q Consensus 391 ~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~--------~~~~is~s~~ 462 (859)
.|+++.|...++..+...+. .-+.|..++|+||+|+|||++|+.+|..+-. .+..+...+-
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK 70 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC
Confidence 47778887777766655543 1245667899999999999999999986522 2222222100
Q ss_pred chhhhcccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc
Q 003000 463 VEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 538 (859)
Q Consensus 463 ~~~~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT 538 (859)
.. .....++.+.+.+.. ....|++||++|.+... ..|.||..++ .+..++++|.+|
T Consensus 71 ~~----i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naLLK~LE--epp~~t~~il~~ 130 (313)
T PRK05564 71 KS----IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAFLKTIE--EPPKGVFIILLC 130 (313)
T ss_pred CC----CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHHHHHhc--CCCCCeEEEEEe
Confidence 00 111234555544332 23469999999888644 6789999999 456677777777
Q ss_pred CCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCH
Q 003000 539 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 599 (859)
Q Consensus 539 N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sg 599 (859)
+.++.+.|.+++ |. ..+.|++|+.++....+...+.. . +...+..++..+.|-.+
T Consensus 131 ~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 131 ENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred CChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 888999999998 55 48999999999988877765431 1 22334556666655433
No 172
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.9e-08 Score=111.91 Aligned_cols=180 Identities=21% Similarity=0.234 Sum_probs=115.1
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccE----E-------E
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----F-------S 456 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~----~-------~ 456 (859)
....++++.|.+.++..+.+.+.. -++|..+||+||+|+||+++|.++|..+-..- . .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 344677788888777666655442 25577799999999999999999998662110 0 0
Q ss_pred e----ecccc--c------hh-hh-----cc--------cchhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCC
Q 003000 457 I----SASQF--V------EI-YV-----GV--------GASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKG 506 (859)
Q Consensus 457 i----s~s~~--~------~~-~~-----g~--------~~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~ 506 (859)
+ .|... + +. ++ +. ....++.+.+.+. ...+.|++|||+|.+...
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~------ 156 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN------ 156 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH------
Confidence 0 00000 0 00 00 10 0122333333322 245679999999988654
Q ss_pred CCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCccc
Q 003000 507 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD 586 (859)
Q Consensus 507 sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d 586 (859)
..+.||..++ ....++++|.+|+.++.+.|.+++ |+ ..|.|++|+.++...++...... ..+..
T Consensus 157 --------aanaLLK~LE--epp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 157 --------AANALLKVLE--EPPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred --------HHHHHHHHHh--cCCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 7888998888 445677888888889999999887 55 48899999999999988876421 12222
Q ss_pred HHHHHhhCCCCCHH
Q 003000 587 YLAVASMTDGMVGA 600 (859)
Q Consensus 587 l~~lA~~t~G~sga 600 (859)
+..++..+.|..+.
T Consensus 221 ~~~l~~~s~Gsp~~ 234 (365)
T PRK07471 221 RAALAALAEGSVGR 234 (365)
T ss_pred HHHHHHHcCCCHHH
Confidence 34566667664443
No 173
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.9e-08 Score=111.28 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=113.2
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc-------cEEEe-ecc
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSI-SAS 460 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-------~~~~i-s~s 460 (859)
...++.+.|.+.++..+..++.. -+.|..++|+||+|+||||+++.+|..+.. +.... .++
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~ 87 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP 87 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC
Confidence 34566777877777666655441 245667999999999999999999987633 11100 110
Q ss_pred c---cchh---------hhc----c---------cchhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchh
Q 003000 461 Q---FVEI---------YVG----V---------GASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQE 511 (859)
Q Consensus 461 ~---~~~~---------~~g----~---------~~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~ 511 (859)
. .... ++. . ....++.+.+... .....|++|||+|.+...
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~----------- 156 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN----------- 156 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-----------
Confidence 0 0000 010 0 0122233333222 234569999999998654
Q ss_pred HHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHH
Q 003000 512 RDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA 591 (859)
Q Consensus 512 ~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA 591 (859)
..+.||..++. +..++++|..|+.++.+.|.+++ |+ ..+.|++|+.++...++........+ ++..+..++
T Consensus 157 ---aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~ 227 (351)
T PRK09112 157 ---AANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALL 227 (351)
T ss_pred ---HHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHH
Confidence 67889988885 44566666667788888899988 76 59999999999999999874322221 122345566
Q ss_pred hhCCCCCH
Q 003000 592 SMTDGMVG 599 (859)
Q Consensus 592 ~~t~G~sg 599 (859)
..+.|..+
T Consensus 228 ~~s~G~pr 235 (351)
T PRK09112 228 QRSKGSVR 235 (351)
T ss_pred HHcCCCHH
Confidence 66655433
No 174
>PRK04132 replication factor C small subunit; Provisional
Probab=98.80 E-value=3.1e-08 Score=120.94 Aligned_cols=177 Identities=21% Similarity=0.243 Sum_probs=126.5
Q ss_pred CccCce-EEEEC--CCCCCchhHHHhhhhcc-----cccEEEeeccccchhhhcccchhhhhHHHHHHhc------CCcE
Q 003000 423 VRIPGG-ILLCG--PPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDN------APSV 488 (859)
Q Consensus 423 l~~~~g-vLL~G--PpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~------~p~I 488 (859)
+.+|+- -+..| |++.||||+|++||+++ +.+++.+++++... ...++.+...+... .+.|
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KV 633 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKI 633 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEE
Confidence 344432 46668 99999999999999987 55789999987422 12345555443322 2359
Q ss_pred EEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHH
Q 003000 489 VFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGR 568 (859)
Q Consensus 489 l~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR 568 (859)
++|||+|.+... ..+.|+..|+. ...++.+|++||.+..+.+++++ |+ ..+.|++|+.++.
T Consensus 634 vIIDEaD~Lt~~--------------AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i 694 (846)
T PRK04132 634 IFLDEADALTQD--------------AQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDI 694 (846)
T ss_pred EEEECcccCCHH--------------HHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHH
Confidence 999999998644 67888888884 45688899999999999999998 65 5889999999999
Q ss_pred HHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 569 MEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 569 ~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
...+...+...++. ++..+..++..+.|-.+.-| ++++.+.. . ...|+.+++..+.
T Consensus 695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI-n~Lq~~~~---~--~~~It~~~V~~~~ 751 (846)
T PRK04132 695 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI-NILQAAAA---L--DDKITDENVFLVA 751 (846)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHHHH---h--cCCCCHHHHHHHh
Confidence 98888777654443 34567888888887554444 55554432 1 2358888877653
No 175
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5.9e-08 Score=107.40 Aligned_cols=95 Identities=35% Similarity=0.562 Sum_probs=67.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccccch-hhhcccchhh-hhHHHHH----HhcCCcEEEhhhhHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASRV-RSLYQEA----KDNAPSVVFIDELDAVGRER 501 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~-~~~g~~~~~l-~~lfe~a----~~~~p~Il~iDEId~l~~~r 501 (859)
+|||.||+|+|||.|++.||..+++||...+|..+.. .|+|.....+ ..+++.| .+..-+|+||||+|++....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 4999999999999999999999999999999998764 4888765543 4444443 23345699999999997432
Q ss_pred CCc---CCCCchhHHHHHHHHHHhhcc
Q 003000 502 GLI---KGSGGQERDATLNQLLVCLDG 525 (859)
Q Consensus 502 ~~~---~~sgge~~r~~l~~LL~~ld~ 525 (859)
... .+-+|+. +...||..+++
T Consensus 308 ~~i~~~RDVsGEG---VQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEG---VQQALLKLLEG 331 (564)
T ss_pred ccccccccccchh---HHHHHHHHhcc
Confidence 111 1223444 55556666665
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.77 E-value=5.3e-08 Score=113.37 Aligned_cols=187 Identities=24% Similarity=0.258 Sum_probs=114.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEE--eecccc------------------chh--------hhcccchhhhhHH
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQF------------------VEI--------YVGVGASRVRSLY 478 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~--is~s~~------------------~~~--------~~g~~~~~l~~lf 478 (859)
..++|+||||+|||+|++.|++.+.+..+. +..+.+ ... .+|.+...-...+
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l 290 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI 290 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHh
Confidence 349999999999999999999876433221 111111 000 1111100000112
Q ss_pred HHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCC-----
Q 003000 479 QEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD----- 542 (859)
Q Consensus 479 e~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~----- 542 (859)
......++|+||++.+... ++..|++.|+.-. ...++.+|+|+|...
T Consensus 291 ---~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 291 ---SLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred ---hhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecC
Confidence 2233469999999887543 6777777664321 135689999999752
Q ss_pred ----------------CCCccCCCCCcccccccCCCCCHHH----------HHHHH----H---HH-HccCCCCCccc--
Q 003000 543 ----------------ILDPALVRPGRFDRKIFIPKPGLIG----------RMEIL----K---VH-ARKKPMADDVD-- 586 (859)
Q Consensus 543 ----------------~LdpaLlrpgRfd~~I~~~~Pd~~e----------R~~Il----~---~~-l~~~~~~~d~d-- 586 (859)
.+...++. |||..+.++.|+.+. ...|- . .. .+...+...+.
T Consensus 354 ~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~ 431 (506)
T PRK09862 354 GNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSP 431 (506)
T ss_pred CCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHH
Confidence 36678888 999999999875321 11121 1 00 00000011110
Q ss_pred --------------HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003000 587 --------------YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 587 --------------l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~ 632 (859)
+..-+...-|+|.+....+++-|...|..++++.|+.+|+.+|+.-
T Consensus 432 ~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 432 EIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 1111234457899999999999999999999999999999999863
No 177
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.74 E-value=2e-08 Score=114.34 Aligned_cols=121 Identities=31% Similarity=0.458 Sum_probs=74.0
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccc--c-----EEEeec----cccchhh----hccc--chhhhhHHHHHHhc--CC
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGV--N-----FFSISA----SQFVEIY----VGVG--ASRVRSLYQEAKDN--AP 486 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~--~-----~~~is~----s~~~~~~----~g~~--~~~l~~lfe~a~~~--~p 486 (859)
.++++|+||||||||++|+.+|..+.. . ++.+.. .+++..+ .|.. .+.+..+...|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 346999999999999999999987632 1 122221 1222222 1110 01122334555543 47
Q ss_pred cEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhc--------------------cccCCCCeEEEeccCCCC----
Q 003000 487 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD--------------------GFEGRGNVITIASTNRPD---- 542 (859)
Q Consensus 487 ~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld--------------------~~~~~~~vlVIatTN~~~---- 542 (859)
.+++||||+.....+ ++..++..|+ .+.-..|+.||+|+|..+
T Consensus 274 ~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccCHHH-------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 899999998865443 2222222222 244457899999999988
Q ss_pred CCCccCCCCCcccccccCCC
Q 003000 543 ILDPALVRPGRFDRKIFIPK 562 (859)
Q Consensus 543 ~LdpaLlrpgRfd~~I~~~~ 562 (859)
.+|.||+| ||. .|.+.+
T Consensus 341 ~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hccHHHHh--hhh-eEEecC
Confidence 69999999 985 455554
No 178
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.73 E-value=5.7e-08 Score=107.22 Aligned_cols=129 Identities=33% Similarity=0.463 Sum_probs=90.1
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhccc------------------------ccEEEeeccccchhhhcccchhhhhHHH
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAG------------------------VNFFSISASQFVEIYVGVGASRVRSLYQ 479 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~------------------------~~~~~is~s~~~~~~~g~~~~~l~~lfe 479 (859)
+.|..+||+||||+|||++|.++|+.+. +.+..++.++....- .....++.+-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 3455699999999999999999999885 456666665532210 11223344433
Q ss_pred HHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCccc
Q 003000 480 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 555 (859)
Q Consensus 480 ~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd 555 (859)
.... ...-|++|||+|.+..+ ..+.|+..++ .+..++.+|.+||.++.+-|.+.+ |.
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc- 160 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RC- 160 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cc-
Confidence 3322 33579999999999765 7788888888 566788999999999999999988 44
Q ss_pred ccccCCCCCHHHHHHHHH
Q 003000 556 RKIFIPKPGLIGRMEILK 573 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~ 573 (859)
..+.|++|+........+
T Consensus 161 ~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 161 QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred eeeecCCchHHHHHHHhh
Confidence 377787765444444333
No 179
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3e-08 Score=112.00 Aligned_cols=230 Identities=15% Similarity=0.120 Sum_probs=141.8
Q ss_pred hhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhchh
Q 003000 287 VATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFM 366 (859)
Q Consensus 287 ~i~~l~~~~~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~ 366 (859)
.|..+ ....+.+|+|||+.|.+.+. ++..+.+++++.+......++..+.+++..+++..
T Consensus 264 dIIH~-~~~kL~~YkGN~~~Fvk~k~--E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~----------------- 323 (582)
T KOG0062|consen 264 DIIHL-ENLKLDYYKGNYSQFVKTKP--EAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARAS----------------- 323 (582)
T ss_pred HHHHH-hhhhhhhhcCcHHHHHHhhH--HhhhhhhhhcchHHHHHHHHHHHHHHhccCcccch-----------------
Confidence 34333 34458899999999999999 56677788888888888899999988875443211
Q ss_pred hhHHHHHHHhcCC--CCcccccCccccccC-ccCchHHHHHHHHHHHhcccc--hhhhccCCccC--ceEEEECCCCCCc
Q 003000 367 KSGARVRRAYGKG--LPQYLERGVDVKFSD-VAGLGKIRLELEEIVKFFTHG--EMYRRRGVRIP--GGILLCGPPGVGK 439 (859)
Q Consensus 367 ~i~~~vs~~tgip--~~~~~~~~~~~~f~~-~~gl~~~v~~l~~~v~~~~~~--~~~~~~gl~~~--~gvLL~GPpGtGK 439 (859)
....++......| .+...+......|+. ...+....+.+..+...+... ..+..+|.... ..+.++|+||.||
T Consensus 324 svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gk 403 (582)
T KOG0062|consen 324 SVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGK 403 (582)
T ss_pred hHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhH
Confidence 0011111111111 122233334455555 223444445555555544322 35566665554 3499999999999
Q ss_pred hhHHHhhhhcccccEEEeeccccchh-hhccc-ch---hhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcC---------
Q 003000 440 TLLAKAVAGEAGVNFFSISASQFVEI-YVGVG-AS---RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK--------- 505 (859)
Q Consensus 440 TtLakaLA~el~~~~~~is~s~~~~~-~~g~~-~~---~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~--------- 505 (859)
||+.|.+.+++.+.-+.+....-... |+.+. .. ..-..++.+....|+. .-.|++.-++..+..+
T Consensus 404 st~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~ 482 (582)
T KOG0062|consen 404 STLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK-TEEEIRRHLGSFGLSGELALQSIAS 482 (582)
T ss_pred HHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC-CHHHHHHHHHhcCCCchhhhccccc
Confidence 99999999998765554443332211 22221 11 1233455555666664 4556666555444332
Q ss_pred CCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCCC
Q 003000 506 GSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 543 (859)
Q Consensus 506 ~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~~ 543 (859)
-|||++.+.+++.+. ..+++++|+ .+||+.|.
T Consensus 483 LSGGQKsrvafA~~~------~~~PhlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 483 LSGGQKSRVAFAACT------WNNPHLLVLDEPTNHLDR 515 (582)
T ss_pred cCCcchhHHHHHHHh------cCCCcEEEecCCCccccH
Confidence 299999999999988 778999999 99999874
No 180
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.8e-08 Score=110.15 Aligned_cols=142 Identities=23% Similarity=0.415 Sum_probs=100.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeec-cccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA-SQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK 505 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~-s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~ 505 (859)
.++||.||||+|||+||-.+|...+.||+.+-. .+.+...-......+..+|+.+.+.+-+++++|+|+.+..- .
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~----v 614 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY----V 614 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc----c
Confidence 359999999999999999999999999997643 33322212223356788999999999999999999998632 2
Q ss_pred CCCchhHHHHHHHHHHhhccccCCCC-eEEEeccCCCCCCCc-cCCCCCcccccccCCCCCH-HHHHHHHHH
Q 003000 506 GSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDILDP-ALVRPGRFDRKIFIPKPGL-IGRMEILKV 574 (859)
Q Consensus 506 ~sgge~~r~~l~~LL~~ld~~~~~~~-vlVIatTN~~~~Ldp-aLlrpgRfd~~I~~~~Pd~-~eR~~Il~~ 574 (859)
.-|-...+.++..|+-.+....+.++ .+|++||...+.|.. .++. .|+..|.+|..+. ++..+++..
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 23334556677778877776665544 666677766554332 3445 7999999998765 556666653
No 181
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.4e-08 Score=105.53 Aligned_cols=84 Identities=29% Similarity=0.437 Sum_probs=62.9
Q ss_pred CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc--------cCCCCeEEEecc----CCCCCCCccCCCCCc
Q 003000 486 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--------EGRGNVITIAST----NRPDILDPALVRPGR 553 (859)
Q Consensus 486 p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~--------~~~~~vlVIatT----N~~~~LdpaLlrpgR 553 (859)
.+|+||||||+++...+ .++++-.+.-+...||-.+++. ...++++||++. ..|..|-|+|. ||
T Consensus 251 ~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred cCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 35999999999986533 1222334445777788777763 235789999877 55778888884 69
Q ss_pred ccccccCCCCCHHHHHHHHH
Q 003000 554 FDRKIFIPKPGLIGRMEILK 573 (859)
Q Consensus 554 fd~~I~~~~Pd~~eR~~Il~ 573 (859)
|+..+.+...+.++...||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999999988885
No 182
>PLN03073 ABC transporter F family; Provisional
Probab=98.67 E-value=5.6e-08 Score=118.55 Aligned_cols=232 Identities=15% Similarity=0.150 Sum_probs=118.0
Q ss_pred hhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhch
Q 003000 286 TVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQF 365 (859)
Q Consensus 286 ~~i~~l~~~~~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~ 365 (859)
+.+..+ ..|.+..|.|+|+.|...++ ++....++.++.+.++++++++.+.+......+..... ...+.
T Consensus 409 d~i~~l-~~g~i~~~~g~~~~~~~~~~--~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~----s~~k~---- 477 (718)
T PLN03073 409 TDILHL-HGQKLVTYKGDYDTFERTRE--EQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQ----SRIKA---- 477 (718)
T ss_pred CEEEEE-ECCEEEEeCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHh----hcchH----
Confidence 344444 45778889999999988766 44444555666666777777776654332111000000 00000
Q ss_pred hhhHHHHHHHhcCCCCcccccCccccccCcc-CchHHHHHHHHHHHhcc-cchhhhccCCccCce--EEEECCCCCCchh
Q 003000 366 MKSGARVRRAYGKGLPQYLERGVDVKFSDVA-GLGKIRLELEEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTL 441 (859)
Q Consensus 366 ~~i~~~vs~~tgip~~~~~~~~~~~~f~~~~-gl~~~v~~l~~~v~~~~-~~~~~~~~gl~~~~g--vLL~GPpGtGKTt 441 (859)
.+.+.... +.. ......+.|+... ..+...+.++++...|. ....+.++++.+..| ++|+||||+||||
T Consensus 478 ---l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKST 550 (718)
T PLN03073 478 ---LDRLGHVD--AVV--NDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKST 550 (718)
T ss_pred ---HHHHhhhh--ccc--cCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHH
Confidence 00010000 000 0000111222110 11222344555555553 234678888888877 9999999999999
Q ss_pred HHHhhhhcccccEEEeeccccch-hhhcccc-hh--h-hhHHHHHHhcCCcEEEhhhhHhhhhccC---------CcCCC
Q 003000 442 LAKAVAGEAGVNFFSISASQFVE-IYVGVGA-SR--V-RSLYQEAKDNAPSVVFIDELDAVGRERG---------LIKGS 507 (859)
Q Consensus 442 LakaLA~el~~~~~~is~s~~~~-~~~g~~~-~~--l-~~lfe~a~~~~p~Il~iDEId~l~~~r~---------~~~~s 507 (859)
|+++|+|.+.+..+.+....... .|+.+.. .. + ...........+.. --.++..++...+ ...-|
T Consensus 551 LLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~-~~~~i~~~L~~~gl~~~~~~~~~~~LS 629 (718)
T PLN03073 551 ILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGV-PEQKLRAHLGSFGVTGNLALQPMYTLS 629 (718)
T ss_pred HHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCC-CHHHHHHHHHHCCCChHHhcCCccccC
Confidence 99999998877666665332111 1222211 00 0 00000111111110 1122333222211 12239
Q ss_pred CchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCC
Q 003000 508 GGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 542 (859)
Q Consensus 508 gge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~ 542 (859)
||++.+..+...+ ....+++++ .+||+.|
T Consensus 630 gGqkqRvaLAraL------~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 630 GGQKSRVAFAKIT------FKKPHILLLDEPSNHLD 659 (718)
T ss_pred HHHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 9999999988877 456778888 8887754
No 183
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.65 E-value=7.4e-09 Score=98.52 Aligned_cols=104 Identities=29% Similarity=0.434 Sum_probs=59.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccc-cc-hhhhcc-----cchhh----hhHHHHHHhcCCcEEEhhhhHh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ-FV-EIYVGV-----GASRV----RSLYQEAKDNAPSVVFIDELDA 496 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~-~~-~~~~g~-----~~~~l----~~lfe~a~~~~p~Il~iDEId~ 496 (859)
++||.|+||+|||++++++|..++..|.+|.+.. +. ....|. ....+ .-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 3799999999999999999999999999987753 22 111111 11111 1122 25999999998
Q ss_pred hhhccCCcCCCCchhHHHHHHHHHHhhccc---------cCCCCeEEEeccCCCC-----CCCccCCCCCcc
Q 003000 497 VGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-----ILDPALVRPGRF 554 (859)
Q Consensus 497 l~~~r~~~~~sgge~~r~~l~~LL~~ld~~---------~~~~~vlVIatTN~~~-----~LdpaLlrpgRf 554 (859)
..++ +.+.||+.|.+. .-...++||+|-|..+ .|+.+++. ||
T Consensus 74 appk--------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APPK--------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-HH--------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCHH--------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 8665 778888777641 2235689999999866 36666666 65
No 184
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.64 E-value=2.5e-07 Score=110.78 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=67.0
Q ss_pred CeEEEeccCCC--CCCCccCCCCCccc---ccccCCC--C-CHHHHHHHHHHH---HccCCCCCccc---HHHHH---hh
Q 003000 531 NVITIASTNRP--DILDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKVH---ARKKPMADDVD---YLAVA---SM 593 (859)
Q Consensus 531 ~vlVIatTN~~--~~LdpaLlrpgRfd---~~I~~~~--P-d~~eR~~Il~~~---l~~~~~~~d~d---l~~lA---~~ 593 (859)
++.||+++|.. ..++|.|++ ||+ ..+.|+. | +.+.+..+.+.. +...+..+.++ +..+. .+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 67888888864 578999998 998 5566543 3 455555554432 32221112222 22222 11
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 594 TDG------MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 594 t~G------~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
..| .+.++|.++++.|...|..++...|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 112 45799999999998888888888999999999987554
No 185
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.64 E-value=3.9e-08 Score=101.32 Aligned_cols=143 Identities=27% Similarity=0.359 Sum_probs=64.5
Q ss_pred cccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEE--eecccc------
Q 003000 391 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQF------ 462 (859)
Q Consensus 391 ~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~--is~s~~------ 462 (859)
.|.++.|....+..+.-+.. | ..+++|+||||||||++|+.+..-+...... +..+..
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 37788888888766654333 1 2469999999999999999999866321110 000000
Q ss_pred ------------ch--------hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHh
Q 003000 463 ------------VE--------IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 522 (859)
Q Consensus 463 ------------~~--------~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ 522 (859)
.. ..+|.+....- -.+....-+|+|+||+-.+-.. ++..|.+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~P---GeislAh~GVLflDE~~ef~~~--------------vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRP---GEISLAHRGVLFLDELNEFDRS--------------VLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE----CGGGGTTSEEEECETTTS-HH--------------HHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCc---CHHHHhcCCEEEechhhhcCHH--------------HHHHHHHH
Confidence 00 01111100000 0012233469999999777543 88888888
Q ss_pred hccc-----------cCCCCeEEEeccCCC-----------------------CCCCccCCCCCcccccccCCCCCHH
Q 003000 523 LDGF-----------EGRGNVITIASTNRP-----------------------DILDPALVRPGRFDRKIFIPKPGLI 566 (859)
Q Consensus 523 ld~~-----------~~~~~vlVIatTN~~-----------------------~~LdpaLlrpgRfd~~I~~~~Pd~~ 566 (859)
|+.. .-..++++|+|+|.= ..|.-.|+. |||..|.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 8642 113568999999851 125556766 88888888776554
No 186
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.9e-07 Score=103.26 Aligned_cols=179 Identities=20% Similarity=0.255 Sum_probs=115.1
Q ss_pred cccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc------------------
Q 003000 391 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------------ 452 (859)
Q Consensus 391 ~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~------------------ 452 (859)
.|+++.|...++..+...+.. -+++..+||+||.|+||+++|.++|..+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 467778888877766665542 245677999999999999999999886521
Q ss_pred cEEEeeccccchh------h---hc--------ccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchh
Q 003000 453 NFFSISASQFVEI------Y---VG--------VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQE 511 (859)
Q Consensus 453 ~~~~is~s~~~~~------~---~g--------~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~ 511 (859)
++..+........ + .| -....++.+.+.+.. ....|++||++|.+...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~----------- 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----------- 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-----------
Confidence 1122221100000 0 00 001123445444432 33568999999888654
Q ss_pred HHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHH
Q 003000 512 RDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA 591 (859)
Q Consensus 512 ~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA 591 (859)
..|.||..|+.- . ++++|..|+.++.|-|.+++ |. ..|.|++|+.++...++........ .+.+...++
T Consensus 140 ---aaNaLLK~LEEP--p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~ 208 (314)
T PRK07399 140 ---AANALLKTLEEP--G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELL 208 (314)
T ss_pred ---HHHHHHHHHhCC--C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHH
Confidence 778999999853 3 55677777888999999998 54 5899999999999999887643221 122346677
Q ss_pred hhCCCCCHHHH
Q 003000 592 SMTDGMVGAEL 602 (859)
Q Consensus 592 ~~t~G~sgadL 602 (859)
....|-.+.-+
T Consensus 209 ~~a~Gs~~~al 219 (314)
T PRK07399 209 ALAQGSPGAAI 219 (314)
T ss_pred HHcCCCHHHHH
Confidence 77766544443
No 187
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.5e-07 Score=111.77 Aligned_cols=135 Identities=21% Similarity=0.283 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccc-hhhhcccch-hh--
Q 003000 401 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-EIYVGVGAS-RV-- 474 (859)
Q Consensus 401 ~v~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~-~~~~g~~~~-~l-- 474 (859)
..+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.|....-. -.|+.+... .+
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 397 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFEN 397 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCC
Confidence 3455556655565555778888888877 99999999999999999999887777776543211 113322211 00
Q ss_pred -hhHHHHHHhcC-CcEEEhhhhHhhhhc---------cCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCC
Q 003000 475 -RSLYQEAKDNA-PSVVFIDELDAVGRE---------RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 542 (859)
Q Consensus 475 -~~lfe~a~~~~-p~Il~iDEId~l~~~---------r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~ 542 (859)
..+.+.+.... +. ---+.++.++.. +....-|||++.+..+...+ ....+++++ .+||..|
T Consensus 398 ~~t~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al------~~~p~lllLDEPt~~LD 470 (530)
T PRK15064 398 DLTLFDWMSQWRQEG-DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLM------MQKPNVLVMDEPTNHMD 470 (530)
T ss_pred CCcHHHHHHHhccCC-ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 11222221110 00 001112222211 11222399999999888887 446677777 6766543
No 188
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.61 E-value=1.8e-07 Score=109.30 Aligned_cols=168 Identities=25% Similarity=0.354 Sum_probs=105.7
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHH--H--hcCCcEEEhhhhHhhhhccCCc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA--K--DNAPSVVFIDELDAVGRERGLI 504 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a--~--~~~p~Il~iDEId~l~~~r~~~ 504 (859)
+||+||||.||||||+.||+++|..++.|+.++--.... ....+..+.+.- . ...|.-+++||||-....
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~--v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~---- 402 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPM--VKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA---- 402 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHH--HHHHHHHHHhhccccccCCCcceEEEecccCCcHH----
Confidence 899999999999999999999999999999987332110 011121121111 1 244666899999864321
Q ss_pred CCCCchhHHHHHHHHHHhhcc------ccCC----------C---CeEEEeccCCCCCCCccCCCCC-cccccccCCCCC
Q 003000 505 KGSGGQERDATLNQLLVCLDG------FEGR----------G---NVITIASTNRPDILDPALVRPG-RFDRKIFIPKPG 564 (859)
Q Consensus 505 ~~sgge~~r~~l~~LL~~ld~------~~~~----------~---~vlVIatTN~~~~LdpaLlrpg-Rfd~~I~~~~Pd 564 (859)
.++.++..+.. .... . .--||+.+|... -|+|+ |- -|-.+|+|.+|.
T Consensus 403 ----------~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR-~Lr~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 403 ----------AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALR-PLRPFAEIIAFVPPS 469 (877)
T ss_pred ----------HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhh-hcccceEEEEecCCC
Confidence 34444443331 0000 0 023677777644 35554 23 377899999999
Q ss_pred HHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003000 565 LIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 618 (859)
Q Consensus 565 ~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~ 618 (859)
.....+=|+..+...++. +|...|+..++ ++-.||+.++|.-.+.+....+
T Consensus 470 ~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 470 QSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred hhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhccc
Confidence 888887777777666554 33444444443 4456999999998887766433
No 189
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=7.2e-08 Score=107.44 Aligned_cols=133 Identities=23% Similarity=0.285 Sum_probs=91.2
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhcccccE--E-Eeeccccc-----------hh-hhc--------------------
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--F-SISASQFV-----------EI-YVG-------------------- 468 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~~~--~-~is~s~~~-----------~~-~~g-------------------- 468 (859)
++|.++||+||+|+||+++|+.+|..+.... . .-.|+... +. ++.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 7788899999999999999999998663311 0 00111100 00 000
Q ss_pred -------------ccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCC
Q 003000 469 -------------VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 531 (859)
Q Consensus 469 -------------~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~ 531 (859)
-....++.+.+.+.. ....|++||++|.+... ..|.||..|+ .+..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhc--CCCcC
Confidence 011223444333321 22347778888777544 7899999999 67788
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHH
Q 003000 532 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 575 (859)
Q Consensus 532 vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~ 575 (859)
+++|.+|+.++.|.|.+++ |+ ..|.|++|+.++....+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 66 58999999999888887654
No 190
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=2e-07 Score=103.28 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=92.4
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhccccc--EEEeecccc-----------chh-hh----c--ccchhhhhHHHHHHh
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN--FFSISASQF-----------VEI-YV----G--VGASRVRSLYQEAKD 483 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~~--~~~is~s~~-----------~~~-~~----g--~~~~~l~~lfe~a~~ 483 (859)
+.+.+++|+||.|+||+++|+.+|..+-.. ...-.|+.. .+. ++ | -+...++.+.+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 456789999999999999999999865221 000011110 000 00 0 112334555444432
Q ss_pred ----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCccccccc
Q 003000 484 ----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 559 (859)
Q Consensus 484 ----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~ 559 (859)
....|++||++|.+... ..|.||..|+ .+..++++|.+|+.++.+.|.+++ |. ..+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA--------------AANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QTWL 162 (325)
T ss_pred ccccCCceEEEEechhhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eEEe
Confidence 33468999999998654 7899999999 577889999999999999999998 54 3788
Q ss_pred CCCCCHHHHHHHHHHH
Q 003000 560 IPKPGLIGRMEILKVH 575 (859)
Q Consensus 560 ~~~Pd~~eR~~Il~~~ 575 (859)
|++|+.++....+...
T Consensus 163 ~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 163 IHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999998887777654
No 191
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=2.2e-07 Score=110.84 Aligned_cols=221 Identities=12% Similarity=0.095 Sum_probs=117.3
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEe-ec---
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI-SA--- 459 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~i-s~--- 459 (859)
.++.....++++.+..+.+..+..++.... ++......++|+||||+||||+++++|+.++..+... +.
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~-------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQV-------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhcc-------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 345566778888887777766665544321 1122223489999999999999999999887654331 11
Q ss_pred cccchhh------------hcccchhhhhHHHHHHh----------cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHH
Q 003000 460 SQFVEIY------------VGVGASRVRSLYQEAKD----------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 517 (859)
Q Consensus 460 s~~~~~~------------~g~~~~~l~~lfe~a~~----------~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~ 517 (859)
......| +......+..++..+.. ....||+||||+.+.... ...+.
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~-----------~~~lq 216 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD-----------TRALH 216 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh-----------HHHHH
Confidence 0000000 01111223334443331 235699999998765320 11344
Q ss_pred HHHH-hhccccCCCCeEEEe-cc-CCC------C-------CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCC-
Q 003000 518 QLLV-CLDGFEGRGNVITIA-ST-NRP------D-------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP- 580 (859)
Q Consensus 518 ~LL~-~ld~~~~~~~vlVIa-tT-N~~------~-------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~- 580 (859)
.+|. ... ..+.+.+|+ +| |.. + .|.+++++..|. .+|.|++.+.....+.|...+....
T Consensus 217 ~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 217 EILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred HHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 4443 221 123333333 33 211 1 133677753344 2789999999997777776665321
Q ss_pred -------CCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHH-------HhCCCccCHHHHHHHH
Q 003000 581 -------MADDVDYLAVASMTDGMVGAELANIVEVAAINMM-------RDGRTEITTDDLLQAA 630 (859)
Q Consensus 581 -------~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~-------~~~~~~It~edl~~Al 630 (859)
+.....+..|+....| |++.+++.-...+. ..+...++..++..+.
T Consensus 293 ~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 293 KNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred ccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 1122345666665554 66655554443322 2233456666655543
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.8e-07 Score=104.31 Aligned_cols=152 Identities=20% Similarity=0.257 Sum_probs=101.8
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcccc------------------------cEEEeeccccchhhhcccchhhhhHH
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------------------NFFSISASQFVEIYVGVGASRVRSLY 478 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~------------------------~~~~is~s~~~~~~~g~~~~~l~~lf 478 (859)
-++|..+||+||.|+||+++|.++|..+-. ++..+....- .. .-+...++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHH
Confidence 356778999999999999999999886521 1222211100 00 01122345554
Q ss_pred HHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcc
Q 003000 479 QEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRF 554 (859)
Q Consensus 479 e~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRf 554 (859)
+.+. .....|++||++|.+... ..|.||..|+ .+..++++|..|+.++.|.|.++| |.
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RC 159 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALLTDA--------------AANALLKTLE--EPPENTWFFLACREPARLLATLRS--RC 159 (334)
T ss_pred HHHhhccccCCceEEEEcchHhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc
Confidence 4443 234569999999998655 7899999999 577899999999999999999999 66
Q ss_pred cccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHH
Q 003000 555 DRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGA 600 (859)
Q Consensus 555 d~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sga 600 (859)
. .+.|++|+.++....+.... +.+ ..+...++..+.|-.+.
T Consensus 160 q-~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 160 R-LHYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPGA 200 (334)
T ss_pred c-cccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHHH
Confidence 5 68999999888777665321 222 22244556666664443
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.3e-07 Score=109.13 Aligned_cols=175 Identities=24% Similarity=0.402 Sum_probs=120.8
Q ss_pred EEEECCCCCCchhHHHhhhhcc----------cccEEEeeccccchh--hhcccchhhhhHHHHHHhcCCcEEEhhhhHh
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI--YVGVGASRVRSLYQEAKDNAPSVVFIDELDA 496 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~~~--~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~ 496 (859)
-+|+|+||+|||.++.-||... +..++.++++.++.. |-|+-+.+++.+.+.+....+.|+|||||+.
T Consensus 194 PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHt 273 (786)
T COG0542 194 PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHT 273 (786)
T ss_pred CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 5899999999999999998754 456788888887644 8899999999999999988888999999999
Q ss_pred hhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC-----CCCccCCCCCcccccccCCCCCHHHHHHH
Q 003000 497 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEI 571 (859)
Q Consensus 497 l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~I 571 (859)
+.+... .+|+ .-..-|.|--.| .++.+-+|++|..-+ .-|+||-| ||. .|.+.-|+.++-..|
T Consensus 274 iVGAG~---~~G~--a~DAaNiLKPaL----ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~I 341 (786)
T COG0542 274 IVGAGA---TEGG--AMDAANLLKPAL----ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAI 341 (786)
T ss_pred hcCCCc---cccc--ccchhhhhHHHH----hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHH
Confidence 965421 1121 111223222222 356678887775433 35899999 996 889999999999999
Q ss_pred HHHHHccCCCC-----CcccHHHHHh-----hCCCCCHHHHHHHHHHHHHHHHH
Q 003000 572 LKVHARKKPMA-----DDVDYLAVAS-----MTDGMVGAELANIVEVAAINMMR 615 (859)
Q Consensus 572 l~~~l~~~~~~-----~d~dl~~lA~-----~t~G~sgadL~~Lv~~A~~~A~~ 615 (859)
++..-...... .|.-+...+. .++-+-|.-...++.+|+.....
T Consensus 342 LrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 342 LRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred HHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence 98654332111 1222222222 24455666666888888755544
No 194
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.57 E-value=1.1e-06 Score=95.16 Aligned_cols=215 Identities=18% Similarity=0.293 Sum_probs=124.1
Q ss_pred cCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---------cccEEEeeccccchh-
Q 003000 396 AGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVEI- 465 (859)
Q Consensus 396 ~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---------~~~~~~is~s~~~~~- 465 (859)
.|+......++.+...+..|.. .-..+++|+|++|.|||++++..+... ..|++.+.+....+.
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3556665555555554444421 113469999999999999999998643 235555554322111
Q ss_pred --h------hc------ccchhh-hhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCC
Q 003000 466 --Y------VG------VGASRV-RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRG 530 (859)
Q Consensus 466 --~------~g------~~~~~l-~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~ 530 (859)
| +| ...... ..+..-.+...+.+++|||++.++.. ...+.+.+++.| ..|.+ .-.-
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~L-K~L~N-eL~i 181 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-------SYRKQREFLNAL-KFLGN-ELQI 181 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-------cHHHHHHHHHHH-HHHhh-ccCC
Confidence 1 11 011111 23445567788889999999998642 122233333333 33321 1112
Q ss_pred CeEEEeccCCCC--CCCccCCCCCcccccccCCCCCH-HHHHHHHHHHHccCCCC--Ccc---cH-HHHHhhCCCCCHHH
Q 003000 531 NVITIASTNRPD--ILDPALVRPGRFDRKIFIPKPGL-IGRMEILKVHARKKPMA--DDV---DY-LAVASMTDGMVGAE 601 (859)
Q Consensus 531 ~vlVIatTN~~~--~LdpaLlrpgRfd~~I~~~~Pd~-~eR~~Il~~~l~~~~~~--~d~---dl-~~lA~~t~G~sgad 601 (859)
.++.++|..-.. .-|+.+-+ ||+ .+.+|.-.. ++...++..+-...++. +++ ++ ..|-..|.|.+ ++
T Consensus 182 piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~ 257 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GE 257 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HH
Confidence 344444432222 24777766 987 555565332 34455666555444433 122 22 44556677655 56
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003000 602 LANIVEVAAINMMRDGRTEITTDDLLQA 629 (859)
Q Consensus 602 L~~Lv~~A~~~A~~~~~~~It~edl~~A 629 (859)
+..+++.|+..|++.|...||.+.+..+
T Consensus 258 l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 258 LSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 8899999999999999999999998764
No 195
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.56 E-value=1.6e-06 Score=90.01 Aligned_cols=193 Identities=20% Similarity=0.251 Sum_probs=127.7
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccc
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFV 463 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~ 463 (859)
...+.+.++.|.+.++..+-+-...|.. -.+-.++||+|.-|||||+|+|++.++. +..+++|+-.++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3457788888988887666443333221 1223459999999999999999998876 6677888776654
Q ss_pred hhhhcccchhhhhHHHHHHhcC-CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc--CCCCeEEEeccCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTNR 540 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~-p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--~~~~vlVIatTN~ 540 (859)
. +-.+++..+..+ .-|||+|++--=. |+. ....|-..|++-. ...||+|.+|+|+
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~----------gd~---~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLSFEE----------GDD---AYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCCCCC----------Cch---HHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 3 344677766544 3478888862111 111 3444555566533 3578999999998
Q ss_pred CCCCCcc--------------------CCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcc---c--HHHHHhhCC
Q 003000 541 PDILDPA--------------------LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV---D--YLAVASMTD 595 (859)
Q Consensus 541 ~~~Ldpa--------------------LlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~---d--l~~lA~~t~ 595 (859)
-..++.. +--..||+-.+.|++++.++-..|+..++....++-+. + ....|..-.
T Consensus 184 RHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg 263 (287)
T COG2607 184 RHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRG 263 (287)
T ss_pred cccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 6654311 11124999999999999999999999999887665421 1 233455566
Q ss_pred CCCHHHHHHHHHHH
Q 003000 596 GMVGAELANIVEVA 609 (859)
Q Consensus 596 G~sgadL~~Lv~~A 609 (859)
|-||+-.-+.++..
T Consensus 264 ~RSGR~A~QF~~~~ 277 (287)
T COG2607 264 GRSGRVAWQFIRDL 277 (287)
T ss_pred CCccHhHHHHHHHH
Confidence 77777766666543
No 196
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2e-07 Score=103.96 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=88.9
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhccccc------------------------EEEeeccccchhhhcccchhhhhHHH
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------------FFSISASQFVEIYVGVGASRVRSLYQ 479 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------------------~~~is~s~~~~~~~g~~~~~l~~lfe 479 (859)
++|..+||+||+|+|||++|+.+|..+-.. +..+.... . ......++.+.+
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~---~--~i~id~ir~l~~ 100 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG---Q--SIKKDQIRYLKE 100 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc---c--cCCHHHHHHHHH
Confidence 556778999999999999999998865221 11111100 0 001123444444
Q ss_pred HHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCccc
Q 003000 480 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 555 (859)
Q Consensus 480 ~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd 555 (859)
.+.. ....|++||++|.+... ..|.||..|+ .+..++++|.+|+.+..+.|.+++ |.
T Consensus 101 ~~~~~~~~~~~kvviI~~a~~~~~~--------------a~NaLLK~LE--EPp~~~~~Il~t~~~~~ll~TIrS--Rc- 161 (329)
T PRK08058 101 EFSKSGVESNKKVYIIEHADKMTAS--------------AANSLLKFLE--EPSGGTTAILLTENKHQILPTILS--RC- 161 (329)
T ss_pred HHhhCCcccCceEEEeehHhhhCHH--------------HHHHHHHHhc--CCCCCceEEEEeCChHhCcHHHHh--hc-
Confidence 4432 23469999999988654 7889999999 456788888888888999999998 44
Q ss_pred ccccCCCCCHHHHHHHHHH
Q 003000 556 RKIFIPKPGLIGRMEILKV 574 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~~ 574 (859)
..++|++|+.++...++..
T Consensus 162 ~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 162 QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred eeeeCCCCCHHHHHHHHHH
Confidence 4889999999888777753
No 197
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.54 E-value=5.7e-07 Score=100.56 Aligned_cols=189 Identities=24% Similarity=0.366 Sum_probs=115.5
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeec----c----------------------------ccchhhhcccchhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA----S----------------------------QFVEIYVGVGASRV 474 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~----s----------------------------~~~~~~~g~~~~~l 474 (859)
.|+||.|+.|+||||++|+|+.-+..--+.+.| . .++..-++.+..++
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 469999999999999999999977433222211 0 01111122222211
Q ss_pred -hh--HHHH------------HHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc-----------ccC
Q 003000 475 -RS--LYQE------------AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----------FEG 528 (859)
Q Consensus 475 -~~--lfe~------------a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~-----------~~~ 528 (859)
.. +... ..+.+-+|+++||+..+... +++.||..+.. +..
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~h 184 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRH 184 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeecc
Confidence 11 1111 11223469999999877543 67777776654 223
Q ss_pred CCCeEEEeccCCCC-CCCccCCCCCcccccccCCCC-CHHHHHHHHHHHHccCCCCCcccH-------------------
Q 003000 529 RGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKP-GLIGRMEILKVHARKKPMADDVDY------------------- 587 (859)
Q Consensus 529 ~~~vlVIatTN~~~-~LdpaLlrpgRfd~~I~~~~P-d~~eR~~Il~~~l~~~~~~~d~dl------------------- 587 (859)
..++++|+|+|.-. .|-|.|+. ||+..|.+..| +.++|..|++..+.-. ..++.-+
T Consensus 185 pa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~ 261 (423)
T COG1239 185 PARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARS 261 (423)
T ss_pred CccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45799999999864 58899998 99999988754 6778999888655321 1111111
Q ss_pred ------------HHHHhh-----CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 588 ------------LAVASM-----TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 588 ------------~~lA~~-----t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
..++.. ..| ..+++ .+++.|...|...|+..++.+|+.+|.....
T Consensus 262 ~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi-~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l 323 (423)
T COG1239 262 LLSEVELDDDAETKIAELCARLAVDG-HRADI-VVVRAAKALAALRGRTEVEEEDIREAAELAL 323 (423)
T ss_pred ccccccCcHHHHHHHHHHHHHhccCC-Cchhh-HHHHHHHHHHHhcCceeeehhhHHHHHhhhh
Confidence 111111 112 23344 5556666777888999999999999887653
No 198
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=3.7e-07 Score=100.96 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=101.1
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcccc---------------------cEEEee--ccccchh-hhcccchhhhhHH
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV---------------------NFFSIS--ASQFVEI-YVGVGASRVRSLY 478 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~---------------------~~~~is--~s~~~~~-~~g~~~~~l~~lf 478 (859)
-++|..+||+||+|+||+++|.++|..+-. ++..+. ...-... ...-....++.+.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 356778999999999999999999975521 111111 0000000 0000122345555
Q ss_pred HHHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcc
Q 003000 479 QEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRF 554 (859)
Q Consensus 479 e~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRf 554 (859)
+.+... ...|++||++|.+... ..|.||..|+ .+..+++||..|+.++.|-|.+++ |+
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hh
Confidence 444332 2359999999998654 7899999999 566788888889999999999999 65
Q ss_pred cccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHH
Q 003000 555 DRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAEL 602 (859)
Q Consensus 555 d~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL 602 (859)
. .|.|++|+.++....+... ... ..+...++..+.|..+..+
T Consensus 165 q-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 165 Q-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred e-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 3 7889999988777776532 222 2234456666666555443
No 199
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.50 E-value=6.3e-07 Score=106.48 Aligned_cols=207 Identities=20% Similarity=0.197 Sum_probs=120.9
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI 465 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~ 465 (859)
...|+.+.|.......+.+.+..+.. ....|+|+|++|||||++|++|.... +.+|+.++|+.+...
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 35677777877777666665554431 23348999999999999999998764 569999999876432
Q ss_pred -----hhcccchhh-------hhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc--C---
Q 003000 466 -----YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G--- 528 (859)
Q Consensus 466 -----~~g~~~~~l-------~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--~--- 528 (859)
.+|...+.+ ...|+. ...+.+|||||+.+... ....|+..++... .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEECCC
Confidence 122211100 011222 23568999999998654 6667777665321 0
Q ss_pred ----CCCeEEEeccCCCC-------CCCccCCCCCccc-ccccCCCCC--HHHHHHHHHHHHccC----CCCCccc---H
Q 003000 529 ----RGNVITIASTNRPD-------ILDPALVRPGRFD-RKIFIPKPG--LIGRMEILKVHARKK----PMADDVD---Y 587 (859)
Q Consensus 529 ----~~~vlVIatTN~~~-------~LdpaLlrpgRfd-~~I~~~~Pd--~~eR~~Il~~~l~~~----~~~~d~d---l 587 (859)
..++.+|++|+..- .+.+.|.. |+. ..|.+|+.. .++...|+..++... .....++ +
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 12477888876531 23333333 343 245555543 234445666555432 1111222 3
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003000 588 LAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 627 (859)
Q Consensus 588 ~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~ 627 (859)
..|..+.=.-..++|.++++.|+..+ ....|+.+|+.
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 34444443345678888888776543 34468888864
No 200
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.48 E-value=3.8e-07 Score=93.94 Aligned_cols=209 Identities=16% Similarity=0.215 Sum_probs=117.6
Q ss_pred ccccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc-cc----cEEEe
Q 003000 383 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GV----NFFSI 457 (859)
Q Consensus 383 ~~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el-~~----~~~~i 457 (859)
+.++.....+.+++|.++.+..+.-+...-.. ++++|.||||+||||-+.+||+++ |. .+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnm------------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNM------------PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCC------------CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 34556677788999999888777655542211 248999999999999999999876 32 23455
Q ss_pred eccccchhhhcccchhhhhHHHHHHhcCC---cEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEE
Q 003000 458 SASQFVEIYVGVGASRVRSLYQEAKDNAP---SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 534 (859)
Q Consensus 458 s~s~~~~~~~g~~~~~l~~lfe~a~~~~p---~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlV 534 (859)
+.|+-. .++.-...+..+-+.--..+| .|+++||.|++... ....|-..|+-+. ...-+
T Consensus 85 NASdeR--GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRtMEiyS--~ttRF 146 (333)
T KOG0991|consen 85 NASDER--GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRTMEIYS--NTTRF 146 (333)
T ss_pred cCcccc--ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHHHHHHc--ccchh
Confidence 554421 111111222222222223333 48999999987532 3333444444222 23446
Q ss_pred EeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003000 535 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM 613 (859)
Q Consensus 535 IatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A 613 (859)
..++|..+.+-..+.+ |.- .+.|...+..+...-+....+...+. .+..++.+.-..+| |+++.+|.- ++
T Consensus 147 alaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnL--Qs 217 (333)
T KOG0991|consen 147 ALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNL--QS 217 (333)
T ss_pred hhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHH--HH
Confidence 6677888877666766 433 44455555554433333222222222 22335555555555 555555543 34
Q ss_pred HHhCCCccCHHHHHHHH
Q 003000 614 MRDGRTEITTDDLLQAA 630 (859)
Q Consensus 614 ~~~~~~~It~edl~~Al 630 (859)
...|-..|+.+.+...+
T Consensus 218 t~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 218 TVNGFGLVNQENVFKVC 234 (333)
T ss_pred Hhccccccchhhhhhcc
Confidence 45566678888776654
No 201
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.48 E-value=7.8e-07 Score=102.00 Aligned_cols=212 Identities=25% Similarity=0.281 Sum_probs=129.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccc
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFV 463 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~ 463 (859)
.....|+++.|-......+...++.+.. -+..|||.|.+||||..+|++|-+.. +.||+.++|+.+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAK----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcC----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3456788888888877777766665432 24459999999999999999997654 6799999999876
Q ss_pred hh-----hhcccchh--------hhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---
Q 003000 464 EI-----YVGVGASR--------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--- 527 (859)
Q Consensus 464 ~~-----~~g~~~~~--------l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--- 527 (859)
+. .+|+..+. -..+|+.|. .+-+|+|||..+-.. ....||..|..-.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgempl~--------------LQaKLLRVLQEkei~r 371 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEMPLP--------------LQAKLLRVLQEKEIER 371 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccCCHH--------------HHHHHHHHHhhceEEe
Confidence 54 33433321 123454432 347999999876433 6778888776411
Q ss_pred ------CCCCeEEEeccCCC--CCC-----CccCCCCCcccccccCCCCCHHHHHH----HHHHHHcc----CCCC-Ccc
Q 003000 528 ------GRGNVITIASTNRP--DIL-----DPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARK----KPMA-DDV 585 (859)
Q Consensus 528 ------~~~~vlVIatTN~~--~~L-----dpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~~----~~~~-~d~ 585 (859)
...+|-||+|||.. +.+ -..|.- |+. ++.+..|...+|.+ +...++.+ .+.. ..+
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 12458999999874 222 222222 332 55666676666654 33333332 2111 112
Q ss_pred c---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH-HHH
Q 003000 586 D---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL-QAA 630 (859)
Q Consensus 586 d---l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~-~Al 630 (859)
. +..|.+..=--..++|+|++..+...+ .....|+.+|+. .++
T Consensus 449 s~~a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l 495 (560)
T COG3829 449 SPDALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFAL 495 (560)
T ss_pred CHHHHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcchhhh
Confidence 2 233333332235689999999888643 333347877776 443
No 202
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.47 E-value=1.4e-06 Score=103.51 Aligned_cols=192 Identities=15% Similarity=0.099 Sum_probs=127.7
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccc--cEEEeeccccchhhhcccc--hhh---hhHHHH--HHhcCCcEEEhhhhHhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGA--SRV---RSLYQE--AKDNAPSVVFIDELDAV 497 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~--~~~~is~s~~~~~~~g~~~--~~l---~~lfe~--a~~~~p~Il~iDEId~l 497 (859)
+|++|.|+.|+|||+++++++.-+.. ||..+..+......+|... ..+ ...++. +.....+|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 57999999999999999999998754 7776665544444454321 000 000100 11223469999999888
Q ss_pred hhccCCcCCCCchhHHHHHHHHHHhhccc-----------cCCCCeEEEeccCCC---CCCCccCCCCCcccccccCCCC
Q 003000 498 GRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRP---DILDPALVRPGRFDRKIFIPKP 563 (859)
Q Consensus 498 ~~~r~~~~~sgge~~r~~l~~LL~~ld~~-----------~~~~~vlVIatTN~~---~~LdpaLlrpgRfd~~I~~~~P 563 (859)
.+. +++.|++.|+.- .-..++++|++.|.. ..|.++++. ||+..|.++.|
T Consensus 106 ~~~--------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 106 EPG--------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred CHH--------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 655 889999988752 113568888875433 348889999 99999999987
Q ss_pred CHHHHH-------HHHH--HHHccCCCCCcccHHHHHhh--CCCC-CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 564 GLIGRM-------EILK--VHARKKPMADDVDYLAVASM--TDGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 564 d~~eR~-------~Il~--~~l~~~~~~~d~dl~~lA~~--t~G~-sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
+..+.. +|.. ..+.+..+. +..+..++.. .-|. |.+-...+++-|...|...|++.|+.+||.+|+.
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 765422 3333 223333332 2223333221 2354 6666668999999999999999999999999998
Q ss_pred HHHc
Q 003000 632 IEER 635 (859)
Q Consensus 632 ~~~~ 635 (859)
.+..
T Consensus 249 lvL~ 252 (584)
T PRK13406 249 LVLA 252 (584)
T ss_pred HHHH
Confidence 7653
No 203
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.46 E-value=1.2e-06 Score=92.90 Aligned_cols=132 Identities=22% Similarity=0.247 Sum_probs=92.0
Q ss_pred cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCC-------------CCCCCccCCC
Q 003000 484 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-------------PDILDPALVR 550 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~-------------~~~LdpaLlr 550 (859)
.-|+|+||||++-+.-. .+..|-..++. .-.-+||.+||+ |..+++.|+.
T Consensus 295 lvPGVLFIDEVhMLDiE--------------cFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIE--------------CFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred hcCcceEeeehhhhhhH--------------HHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 34789999999876433 45555555553 222356666665 4456777766
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003000 551 PGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 629 (859)
Q Consensus 551 pgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~A 629 (859)
|+- +|..-+++.++..+|++.+.....+.-+ .-+..++.....-|-+-..+|+.-|...|...|+..|..+|+.++
T Consensus 358 --Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 --RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred --hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 542 5566678889999999988876655432 335667776666677777788888888898999999999999998
Q ss_pred HHHHHc
Q 003000 630 AQIEER 635 (859)
Q Consensus 630 l~~~~~ 635 (859)
-.....
T Consensus 435 ~~Lf~D 440 (456)
T KOG1942|consen 435 TELFLD 440 (456)
T ss_pred HHHHHh
Confidence 776543
No 204
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.46 E-value=1.1e-06 Score=103.51 Aligned_cols=207 Identities=20% Similarity=0.257 Sum_probs=118.6
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhc-----------ccccEEEee
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE-----------AGVNFFSIS 458 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~e-----------l~~~~~~is 458 (859)
..|+++.|.......+.+.+..+... +..|+|+|++||||+++|++|-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 35777788887777777666654321 235899999999999999999765 467999999
Q ss_pred ccccchh-----hhcccchh--------hhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc
Q 003000 459 ASQFVEI-----YVGVGASR--------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 525 (859)
Q Consensus 459 ~s~~~~~-----~~g~~~~~--------l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~ 525 (859)
|+.+... .+|...+. -..+|+.+ ..+.||||||+.+... ....|+..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------------~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP--------------LQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH--------------HHHHHHhhhhc
Confidence 9876433 23322111 11244443 3458999999998654 66777777654
Q ss_pred cc---------CCCCeEEEeccCCCCCCCccCCCCCcccc-------cccCCCCCHHHHHH----HHHHHHcc----CCC
Q 003000 526 FE---------GRGNVITIASTNRPDILDPALVRPGRFDR-------KIFIPKPGLIGRME----ILKVHARK----KPM 581 (859)
Q Consensus 526 ~~---------~~~~vlVIatTN~~~~LdpaLlrpgRfd~-------~I~~~~Pd~~eR~~----Il~~~l~~----~~~ 581 (859)
.. -..++-||++||..-. .+...|+|.. .+.+..|...+|.+ ++..++.. ...
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~---~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLE---EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHH---HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 21 1234678888865311 1112233331 34555666666543 44555543 221
Q ss_pred CCcccH--------HHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003000 582 ADDVDY--------LAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 626 (859)
Q Consensus 582 ~~d~dl--------~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl 626 (859)
.-..+. ..|..+.=-...++|.++++.++..+.......|+.+++
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 111111 122222222356888888888776432222234665554
No 205
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.46 E-value=2.1e-06 Score=104.84 Aligned_cols=126 Identities=22% Similarity=0.243 Sum_probs=73.4
Q ss_pred ceEEEECCCCCCchhHHHhhhhccc-------ccEEEeeccccchhhhcccchhhhhHHH--HHHhcCCcEEEhhhhHhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFVEIYVGVGASRVRSLYQ--EAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~-------~~~~~is~s~~~~~~~g~~~~~l~~lfe--~a~~~~p~Il~iDEId~l 497 (859)
..|||+|.||||||++|+.++.... .++..+.+..... +.+...+.+ .++ .+.....++++|||++.+
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~--~le~GaLvlAdgGtL~IDEidkm 569 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRA--MIQPGAVVLANGGVCCIDELDKC 569 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcc--cccCCcEEEcCCCeEEecchhhC
Confidence 3599999999999999999987542 2222222222111 010000000 000 011123468999999998
Q ss_pred hhccCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCC-------------CCCccCCCCCc
Q 003000 498 GRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGR 553 (859)
Q Consensus 498 ~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~-------------~LdpaLlrpgR 553 (859)
... ....|+..|+.-. -+.++.||+|+|+.. .|++.|++ |
T Consensus 570 s~~--------------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--R 633 (915)
T PTZ00111 570 HNE--------------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--R 633 (915)
T ss_pred CHH--------------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--h
Confidence 544 4555666664311 135689999999852 37889999 9
Q ss_pred ccccc-cCCCCCHHHHHHH
Q 003000 554 FDRKI-FIPKPGLIGRMEI 571 (859)
Q Consensus 554 fd~~I-~~~~Pd~~eR~~I 571 (859)
||.++ .++.|+.+.=..|
T Consensus 634 FDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 634 FDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred hcEEEEecCCCChHHHHHH
Confidence 99765 4456665443333
No 206
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.45 E-value=1.6e-06 Score=96.78 Aligned_cols=176 Identities=21% Similarity=0.219 Sum_probs=98.6
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----hhcccchhh-------hhHHHHHHhcCCcEEEh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFI 491 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l-------~~lfe~a~~~~p~Il~i 491 (859)
..|+|+|++||||+++|++|-... +.+|+.++|+.+... .+|.....+ ..+|+.+ ..+.+||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 348999999999999999996544 579999999865332 222211100 1123332 3568999
Q ss_pred hhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---------CCCCeEEEeccCCC-------CCCCccCCCCCccc
Q 003000 492 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFD 555 (859)
Q Consensus 492 DEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~---------~~~~vlVIatTN~~-------~~LdpaLlrpgRfd 555 (859)
|||+.+... ....|+..++... ...++.||++||.. ..+.+.|.. ||.
T Consensus 100 dei~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 100 DELATASLL--------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred CChHhCCHH--------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 999998654 6667777665321 12457888888753 123445554 553
Q ss_pred ccccCCCCCHHHH----HHHHHHHHccC----CCC--Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003000 556 RKIFIPKPGLIGR----MEILKVHARKK----PMA--DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 622 (859)
Q Consensus 556 ~~I~~~~Pd~~eR----~~Il~~~l~~~----~~~--~d~d---l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It 622 (859)
.+.|..|...+| ..++..++... ... ..++ +..|..+.=--..++|.++++.++..+ ....++
T Consensus 164 -~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~---~~~~~~ 239 (329)
T TIGR02974 164 -FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH---GLEEAP 239 (329)
T ss_pred -chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC---CCCccc
Confidence 233444444444 33455444321 111 1222 233333332334577777777766443 222455
Q ss_pred HHH
Q 003000 623 TDD 625 (859)
Q Consensus 623 ~ed 625 (859)
.++
T Consensus 240 ~~~ 242 (329)
T TIGR02974 240 IDE 242 (329)
T ss_pred hhh
Confidence 544
No 207
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=6e-07 Score=99.25 Aligned_cols=130 Identities=24% Similarity=0.322 Sum_probs=91.5
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcccc-----------------------cEEEeeccccchhhhcccchhhhhHHH
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----------------------NFFSISASQFVEIYVGVGASRVRSLYQ 479 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~-----------------------~~~~is~s~~~~~~~g~~~~~l~~lfe 479 (859)
-++|.+++|+||.|+||+++|+.+|..+-. ++..+....- ... -....++.+.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKS--ITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCc--CCHHHHHHHHH
Confidence 356778999999999999999999885521 1222221100 000 01123344444
Q ss_pred HHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCccc
Q 003000 480 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 555 (859)
Q Consensus 480 ~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd 555 (859)
.+.. ....|++||++|.+... ..|.||..++ .+..++++|..|+.++.+-|.+++ |..
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq 160 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ 160 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce
Confidence 4322 33569999999998654 7899999999 577889999999999999999999 553
Q ss_pred ccccCCCCCHHHHHHHHHH
Q 003000 556 RKIFIPKPGLIGRMEILKV 574 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~~ 574 (859)
.+.|++|+.++..+.+..
T Consensus 161 -~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 -QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -eEeCCCCCHHHHHHHHHH
Confidence 789999998887777653
No 208
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.42 E-value=1.7e-06 Score=101.85 Aligned_cols=211 Identities=20% Similarity=0.243 Sum_probs=120.3
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhc---ccccEEEeeccccchh-
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE---AGVNFFSISASQFVEI- 465 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~e---l~~~~~~is~s~~~~~- 465 (859)
..|+++.|.......+.+.+..+... +..|+|+|++||||+++|++|-.. .+.||+.++|+.+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 55777788887777777666654321 235899999999999999999764 3679999999876432
Q ss_pred ----hhcccchh--------hhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc------
Q 003000 466 ----YVGVGASR--------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------ 527 (859)
Q Consensus 466 ----~~g~~~~~--------l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~------ 527 (859)
.+|...+. -..+|+.+ ..+.+|||||+.+... ....|+..++...
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecCC
Confidence 23321111 12234433 3458999999998654 6667777665321
Q ss_pred ---CCCCeEEEeccCCCC--CCCccCCCCC---cccccccCCCCCHHHHHH----HHHHHHccC----CCCCccc-HHH-
Q 003000 528 ---GRGNVITIASTNRPD--ILDPALVRPG---RFDRKIFIPKPGLIGRME----ILKVHARKK----PMADDVD-YLA- 589 (859)
Q Consensus 528 ---~~~~vlVIatTN~~~--~LdpaLlrpg---Rfd~~I~~~~Pd~~eR~~----Il~~~l~~~----~~~~d~d-l~~- 589 (859)
...++-||++||..- .+....+++. |+. .+.+..|...+|.+ ++..++... ...-+.+ +..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 112467888886542 2222222211 222 24445555555543 445555432 1111111 111
Q ss_pred ------HHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003000 590 ------VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ 628 (859)
Q Consensus 590 ------lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~ 628 (859)
|..+.=-...++|.++++.+...+.......|+.+++..
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 333332335578888888877654322234688877643
No 209
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.41 E-value=1.7e-06 Score=102.08 Aligned_cols=193 Identities=19% Similarity=0.207 Sum_probs=111.2
Q ss_pred ccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh---
Q 003000 392 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI--- 465 (859)
Q Consensus 392 f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~--- 465 (859)
+..+.|.......+.+.+..+.. .+..|+|+|++||||+++|++|.... +.+|+.++|+.+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAE 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHH
Confidence 44556666666666555554321 13358999999999999999998754 579999999876432
Q ss_pred --hhcccchhh-------hhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---------
Q 003000 466 --YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------- 527 (859)
Q Consensus 466 --~~g~~~~~l-------~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--------- 527 (859)
.+|.....+ ...|+. ...+.+|||||+.+... ....|+..++...
T Consensus 256 ~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 256 SELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 233211110 112333 33568999999998654 5667776665321
Q ss_pred CCCCeEEEeccCCCC-------CCCccCCCCCcccccccCCCCCHHHHHH----HHHHHHccC----CC-CCccc---HH
Q 003000 528 GRGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARKK----PM-ADDVD---YL 588 (859)
Q Consensus 528 ~~~~vlVIatTN~~~-------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~~~----~~-~~d~d---l~ 588 (859)
...++-||++||..- .+.+.|.. |+. .+.|..|...+|.+ ++..++... .. ...++ +.
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 113578888887642 13333333 332 33455555555543 444444321 11 11222 33
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003000 589 AVASMTDGMVGAELANIVEVAAINMM 614 (859)
Q Consensus 589 ~lA~~t~G~sgadL~~Lv~~A~~~A~ 614 (859)
.|..+.=-...++|.++++.|+..+.
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 34444333456888899988876653
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.40 E-value=1.9e-06 Score=96.05 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=46.6
Q ss_pred ccc-CccCchHHHHHHHHHHHhcccchhhhccCCccC-ceEEEECCCCCCchhHHHhhhhcccc-------cEEEeec--
Q 003000 391 KFS-DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP-GGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSISA-- 459 (859)
Q Consensus 391 ~f~-~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~-~gvLL~GPpGtGKTtLakaLA~el~~-------~~~~is~-- 459 (859)
-|+ ++.|+.+++..+-+ .+.... .|.... +.++|+||||+|||||+++|++.++. +++.+.+
T Consensus 48 ~F~~~~~G~~~~i~~lv~---~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVN---YFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHH---HHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 355 67788887644443 332221 232323 45899999999999999999999866 8888887
Q ss_pred --cccchh
Q 003000 460 --SQFVEI 465 (859)
Q Consensus 460 --s~~~~~ 465 (859)
+.+.+.
T Consensus 121 ~~sp~~e~ 128 (361)
T smart00763 121 EESPMHED 128 (361)
T ss_pred CCCCCccC
Confidence 555444
No 211
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.39 E-value=1.4e-06 Score=97.05 Aligned_cols=191 Identities=20% Similarity=0.193 Sum_probs=105.8
Q ss_pred ccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh---
Q 003000 392 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI--- 465 (859)
Q Consensus 392 f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~--- 465 (859)
++++.|.......+.+.+..+. ..+..|+|+|++||||+++|++|-... +.+|+.++|+.+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 3445566666555555444332 123358999999999999999997544 468999999876422
Q ss_pred --hhcccchh-------hhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc--C------
Q 003000 466 --YVGVGASR-------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G------ 528 (859)
Q Consensus 466 --~~g~~~~~-------l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--~------ 528 (859)
.+|..... ....++. ...+.+||||++.+... ....|+..++... .
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCce
Confidence 22221110 0112322 33568999999998654 5666666665321 1
Q ss_pred -CCCeEEEeccCCC-------CCCCccCCCCCcccccccCCCCCHHHHH----HHHHHHHcc----CCCC--CcccH---
Q 003000 529 -RGNVITIASTNRP-------DILDPALVRPGRFDRKIFIPKPGLIGRM----EILKVHARK----KPMA--DDVDY--- 587 (859)
Q Consensus 529 -~~~vlVIatTN~~-------~~LdpaLlrpgRfd~~I~~~~Pd~~eR~----~Il~~~l~~----~~~~--~d~dl--- 587 (859)
..++.||++|+.. ..+.+.|.. ||. .+.|..|...+|. .++..++.. .... ..++-
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1257888887653 234455555 553 2334444445543 345544422 1111 12232
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHH
Q 003000 588 LAVASMTDGMVGAELANIVEVAAIN 612 (859)
Q Consensus 588 ~~lA~~t~G~sgadL~~Lv~~A~~~ 612 (859)
..|....=--..++|.++++.|...
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 3333333223457777777777643
No 212
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.39 E-value=4e-07 Score=108.72 Aligned_cols=135 Identities=24% Similarity=0.289 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccc-hhhhcccchhh---h
Q 003000 402 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-EIYVGVGASRV---R 475 (859)
Q Consensus 402 v~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~-~~~~g~~~~~l---~ 475 (859)
.+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.|..+.-. -.|+.+....+ .
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~ 403 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNK 403 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCC
Confidence 344555555565555788888888887 99999999999999999999887777776653211 11333321111 1
Q ss_pred hHHHHHHhcCC--cEE-EhhhhHhhhhcc---------CCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCC
Q 003000 476 SLYQEAKDNAP--SVV-FIDELDAVGRER---------GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 542 (859)
Q Consensus 476 ~lfe~a~~~~p--~Il-~iDEId~l~~~r---------~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~ 542 (859)
.+++.+..... ..- --.++..++... ....-|||+..+..+...+ ....+++++ .+||..|
T Consensus 404 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al------~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 404 TVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL------KQGGNVLLLDEPTNDLD 477 (556)
T ss_pred CHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 23333221100 000 001111111111 1122389999998888777 456777777 7777644
No 213
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.38 E-value=6.5e-07 Score=106.81 Aligned_cols=135 Identities=22% Similarity=0.299 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccc-hhhhcccchhh---h
Q 003000 402 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-EIYVGVGASRV---R 475 (859)
Q Consensus 402 v~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~-~~~~g~~~~~l---~ 475 (859)
.+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.|..+.-. -.|+.+....+ .
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~ 401 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNK 401 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCC
Confidence 345555555565555788888888887 99999999999999999999887777766543211 11333321100 1
Q ss_pred hHHHHHHhcCC--cEE-EhhhhHhhhhcc---------CCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCC
Q 003000 476 SLYQEAKDNAP--SVV-FIDELDAVGRER---------GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 542 (859)
Q Consensus 476 ~lfe~a~~~~p--~Il-~iDEId~l~~~r---------~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~ 542 (859)
.+++.+..... ..- .-..+..+.... ....-|+|++.+..+...+ ....+++++ .+||..|
T Consensus 402 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al------~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 402 TVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL------KSGGNVLLLDEPTNDLD 475 (552)
T ss_pred cHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH------hhCCCEEEEeCCCCCCC
Confidence 23333321100 000 000111111111 1122389999999888877 445677777 7776644
No 214
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.6e-07 Score=98.65 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=41.1
Q ss_pred HhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 410 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 410 ~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..|.....+.++++.++.| +.|+||+|||||||++.|||...+..+.|..
T Consensus 11 ~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~ 62 (248)
T COG1116 11 KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62 (248)
T ss_pred EEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 3455556778899999988 9999999999999999999988777666543
No 215
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.37 E-value=4.1e-06 Score=98.09 Aligned_cols=190 Identities=17% Similarity=0.203 Sum_probs=114.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcc----------cccEEEeeccccchh---hh-------cccch------hhhhHHHHH
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI---YV-------GVGAS------RVRSLYQEA 481 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~~~---~~-------g~~~~------~l~~lfe~a 481 (859)
.+.+.|-||||||.++..+..++ ...++.|++-.+... |. |.... .+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 38999999999999999998755 356777776655443 21 11110 111111100
Q ss_pred -HhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC----CCccCCCCCccc-
Q 003000 482 -KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI----LDPALVRPGRFD- 555 (859)
Q Consensus 482 -~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~----LdpaLlrpgRfd- 555 (859)
....++||+|||+|.+.... ..++..+..... ..+..++||+-.|..+. |.+.+-+ |++
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~ 568 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGL 568 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccc
Confidence 23457899999999997642 114444442222 34567888888888764 3333333 554
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHH-hh---CCCCCHHHHHHHHHHHHHHHHHhCC-------CccCHH
Q 003000 556 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA-SM---TDGMVGAELANIVEVAAINMMRDGR-------TEITTD 624 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA-~~---t~G~sgadL~~Lv~~A~~~A~~~~~-------~~It~e 624 (859)
..|.|.+++..+..+|+..++.....-.+ +..+|+ +. ..|-+.+. ..+|+.|...|..+.. ..|+.-
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~-~aielvarkVAavSGDaRra-ldic~RA~Eia~~~~~~~k~~~~q~v~~~ 646 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFEN-KAIELVARKVAAVSGDARRA-LDICRRAAEIAEERNVKGKLAVSQLVGIL 646 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcch-hHHHHHHHHHHhccccHHHH-HHHHHHHHHHhhhhcccccccccceeehH
Confidence 47899999999999999999877632221 222333 22 22333333 3778888877765544 446666
Q ss_pred HHHHHHHHHH
Q 003000 625 DLLQAAQIEE 634 (859)
Q Consensus 625 dl~~Al~~~~ 634 (859)
|+.+|+..+.
T Consensus 647 ~v~~Ai~em~ 656 (767)
T KOG1514|consen 647 HVMEAINEML 656 (767)
T ss_pred HHHHHHHHHh
Confidence 6666665443
No 216
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.5e-07 Score=101.41 Aligned_cols=210 Identities=25% Similarity=0.298 Sum_probs=124.6
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccccc----EEEeeccccch
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----FFSISASQFVE 464 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~----~~~is~s~~~~ 464 (859)
...|.|+.|....+..+.-+... ..+++++||||||||+|++.+.+-+.+- .++++. +.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~---I~ 237 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSA---IH 237 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHH---Hh
Confidence 34678888888887666544332 2358999999999999999999877431 111110 00
Q ss_pred hhhcccch-----------------hhhhHHH--------HHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHH
Q 003000 465 IYVGVGAS-----------------RVRSLYQ--------EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 519 (859)
Q Consensus 465 ~~~g~~~~-----------------~l~~lfe--------~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~L 519 (859)
.+.|.... ....+.- .+.....+|+|+||+-.+-. .+++.|
T Consensus 238 s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~--------------~iLe~L 303 (490)
T COG0606 238 SLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKR--------------SILEAL 303 (490)
T ss_pred hhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhH--------------HHHHHH
Confidence 01110000 0000000 01112235999999866533 388888
Q ss_pred HHhhcccc-----------CCCCeEEEeccCCCC-----------------------CCCccCCCCCcccccccCCCCCH
Q 003000 520 LVCLDGFE-----------GRGNVITIASTNRPD-----------------------ILDPALVRPGRFDRKIFIPKPGL 565 (859)
Q Consensus 520 L~~ld~~~-----------~~~~vlVIatTN~~~-----------------------~LdpaLlrpgRfd~~I~~~~Pd~ 565 (859)
.+-|++-. -..++.+|+++|.-- .|.-.|++ |||..+.++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 88777521 124578888888631 23446666 9999999988764
Q ss_pred HHHH--------------HHHHHH----HccCCC--C----------------CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 003000 566 IGRM--------------EILKVH----ARKKPM--A----------------DDVDYLAVASMTDGMVGAELANIVEVA 609 (859)
Q Consensus 566 ~eR~--------------~Il~~~----l~~~~~--~----------------~d~dl~~lA~~t~G~sgadL~~Lv~~A 609 (859)
.++. .+.+.+ .+...+ + .+.++...+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3332 222211 011111 1 122333444455578888888888888
Q ss_pred HHHHHHhCCCccCHHHHHHHHH
Q 003000 610 AINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 610 ~~~A~~~~~~~It~edl~~Al~ 631 (859)
...|-..+.+.|...|+.+|+.
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHh
Confidence 8888888888888889888875
No 217
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.35 E-value=7.6e-07 Score=89.27 Aligned_cols=117 Identities=29% Similarity=0.389 Sum_probs=75.7
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhcccc-----------------------cEEEeeccccchhhhcccchhhhhHHHH
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGV-----------------------NFFSISASQFVEIYVGVGASRVRSLYQE 480 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~-----------------------~~~~is~s~~~~~~~g~~~~~l~~lfe~ 480 (859)
++|..++|+||+|+||+++|..+|..+-. ++..++...... .-....++.+.+.
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHHH
Confidence 56777999999999999999999986511 122222211100 0112334445444
Q ss_pred HHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccc
Q 003000 481 AKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 556 (859)
Q Consensus 481 a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~ 556 (859)
+.. ....|++||++|.+... ..|.||..|+ .+..++++|.+|+.++.|-|.+++ |.-
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~~~--------------a~NaLLK~LE--epp~~~~fiL~t~~~~~il~TI~S--Rc~- 154 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLTEE--------------AQNALLKTLE--EPPENTYFILITNNPSKILPTIRS--RCQ- 154 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS-HH--------------HHHHHHHHHH--STTTTEEEEEEES-GGGS-HHHHT--TSE-
T ss_pred HHHHHhcCCceEEEeehHhhhhHH--------------HHHHHHHHhc--CCCCCEEEEEEECChHHChHHHHh--hce-
Confidence 432 23569999999998765 8899999999 566789999999999999999998 542
Q ss_pred cccCCC
Q 003000 557 KIFIPK 562 (859)
Q Consensus 557 ~I~~~~ 562 (859)
.|.|++
T Consensus 155 ~i~~~~ 160 (162)
T PF13177_consen 155 VIRFRP 160 (162)
T ss_dssp EEEE--
T ss_pred EEecCC
Confidence 455544
No 218
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.35 E-value=1.5e-06 Score=97.86 Aligned_cols=197 Identities=23% Similarity=0.253 Sum_probs=115.1
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhh---c-ccccEEEeeccccc
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAG---E-AGVNFFSISASQFV 463 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~---e-l~~~~~~is~s~~~ 463 (859)
....+.++.|.......+.+-++.+.. ....||++|++||||+.+|+.|.. . ...||+.++|+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAP----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCC----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 344566666766666666555554321 112389999999999999999864 2 36799999999876
Q ss_pred hh-----hhcccch-------hhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc-----
Q 003000 464 EI-----YVGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF----- 526 (859)
Q Consensus 464 ~~-----~~g~~~~-------~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~----- 526 (859)
+. .+|...+ .-..+|+.+ ..+.+|+|||..+-.. ....|+..|+..
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRV 205 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEec
Confidence 54 2222111 113355544 3458999999988654 566677777651
Q ss_pred ----cCCCCeEEEeccCC--CCCCCc--cCCCCCcccccccCCCCCHHHHH----HHHHHHH----ccCCCCCccc----
Q 003000 527 ----EGRGNVITIASTNR--PDILDP--ALVRPGRFDRKIFIPKPGLIGRM----EILKVHA----RKKPMADDVD---- 586 (859)
Q Consensus 527 ----~~~~~vlVIatTN~--~~~Ldp--aLlrpgRfd~~I~~~~Pd~~eR~----~Il~~~l----~~~~~~~d~d---- 586 (859)
....+|.+|++||. .+.+-. .|.++ |+...|.+|+ ..+|. .+++.++ ++.......+
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPp--LrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a 282 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPP--LRERKEDILLLAEHFLKSEARRLGLPLSVDSPEA 282 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCC--hhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 12356899988854 233333 44431 4444555555 44443 2333333 3333332222
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003000 587 YLAVASMTDGMVGAELANIVEVAAINMM 614 (859)
Q Consensus 587 l~~lA~~t~G~sgadL~~Lv~~A~~~A~ 614 (859)
+..+-.+.---..++|.++|..++..+.
T Consensus 283 ~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 283 LRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 2233333222356889999998886663
No 219
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=7.4e-07 Score=99.09 Aligned_cols=132 Identities=22% Similarity=0.337 Sum_probs=89.2
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhccc-------------------------ccEEEeecccc----chhhhcccchhh
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAG-------------------------VNFFSISASQF----VEIYVGVGASRV 474 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~-------------------------~~~~~is~s~~----~~~~~g~~~~~l 474 (859)
++|.+++|+||+|+|||++|+.+|+.+. ++++.++...- ......-+...+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 6778899999999999999999998652 22333332110 000000122344
Q ss_pred hhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCC
Q 003000 475 RSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVR 550 (859)
Q Consensus 475 ~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlr 550 (859)
+.+.+.+.. ....|+++|+++.+... ..+.|+..++... .++.+|.+|+.++.+.|.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH
Confidence 666655543 23458889999888654 6777888888543 456677788888899999888
Q ss_pred CCcccccccCCCCCHHHHHHHHHH
Q 003000 551 PGRFDRKIFIPKPGLIGRMEILKV 574 (859)
Q Consensus 551 pgRfd~~I~~~~Pd~~eR~~Il~~ 574 (859)
|. ..+.|++|+.++....+..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 54 4888999999887776653
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.33 E-value=1.1e-05 Score=89.92 Aligned_cols=67 Identities=22% Similarity=0.170 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 003000 210 EIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKK-----EIRLQKYEESLQDARDNYRYMAN 276 (859)
Q Consensus 210 ~~~~~~~~~~~~~~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~-----~~rl~~l~~el~~~~~~~~~l~~ 276 (859)
+.|+..+..++.++.|+-+.=.++.+++.++..+-.......-. ..-+.++.+++.+|+++..+|..
T Consensus 15 ~~r~~~~~~~~~r~~e~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~ 86 (329)
T PRK06835 15 KRRDKEELELKNRKEEVYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLV 86 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888899999999999999999998887665433221 22566666666666666655543
No 221
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.33 E-value=2.2e-06 Score=98.21 Aligned_cols=204 Identities=24% Similarity=0.297 Sum_probs=124.8
Q ss_pred cccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh--
Q 003000 391 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-- 465 (859)
Q Consensus 391 ~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-- 465 (859)
.+....|-......+...+..+... ...|+|+|++||||-.+|++|-... +.||+.++|+.+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 4555667777888887777765432 2348999999999999999997755 569999999986544
Q ss_pred ---hhcccchhh-------hhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----C--
Q 003000 466 ---YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G-- 528 (859)
Q Consensus 466 ---~~g~~~~~l-------~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----~-- 528 (859)
.+|...+.+ ...|+.+ ..+.+|||||..+... +...||..+..-. +
T Consensus 209 ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl~--------------~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPLE--------------LQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCHH--------------HHHHHHHHHHcCeeEecCCCc
Confidence 344333211 1234433 3568999999887544 6777887776411 1
Q ss_pred --CCCeEEEeccCCC--CC-----CCccCCCCCcccccccCCCCCHHHHHH----HHHHHHcc----CCC-CCcccHHHH
Q 003000 529 --RGNVITIASTNRP--DI-----LDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARK----KPM-ADDVDYLAV 590 (859)
Q Consensus 529 --~~~vlVIatTN~~--~~-----LdpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~~----~~~-~~d~dl~~l 590 (859)
.-+|-||++||.. +. +-+.|.. |+. ++.+..|...+|.+ ++.+++.. .+. ...++-..+
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~ 348 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEAL 348 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 2358899999863 12 2222322 332 66777777777765 44444433 211 234455555
Q ss_pred HhhCCCCC---HHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003000 591 ASMTDGMV---GAELANIVEVAAINMMRDGRTEITTDDLL 627 (859)
Q Consensus 591 A~~t~G~s---gadL~~Lv~~A~~~A~~~~~~~It~edl~ 627 (859)
+.....-- .++|.|+++.++. ......|+.+++.
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~i---l~~~~~i~~~~l~ 385 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVI---LSEGPEIEVEDLP 385 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHh---cCCccccchhhcc
Confidence 55544333 3556666665553 3345567777664
No 222
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.31 E-value=3.7e-06 Score=102.05 Aligned_cols=208 Identities=20% Similarity=0.230 Sum_probs=117.8
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI- 465 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~- 465 (859)
..|+++.|.......+.+.+..+.. ....|+|+|++||||+++|++|.... +.+|+.++|+.+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 4577777766666555544443321 12348999999999999999998754 469999999876432
Q ss_pred ----hhccc----chhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc----C-----
Q 003000 466 ----YVGVG----ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----G----- 528 (859)
Q Consensus 466 ----~~g~~----~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~----~----- 528 (859)
.+|.. .......|+. ...+.||||||+.+... ....|+..++.-. +
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceE
Confidence 23321 0001112332 34568999999998654 5667777665321 0
Q ss_pred CCCeEEEeccCCCC-------CCCccCCCCCcccccccCCCCCHHHHH----HHHHHHHccC----C--C-CCcccHHHH
Q 003000 529 RGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRM----EILKVHARKK----P--M-ADDVDYLAV 590 (859)
Q Consensus 529 ~~~vlVIatTN~~~-------~LdpaLlrpgRfd~~I~~~~Pd~~eR~----~Il~~~l~~~----~--~-~~d~dl~~l 590 (859)
..++.||+|||..- .+.+.|.. |+. .+.+..|...+|. .++..++... . + ..+..+..|
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 12577888887531 12222222 221 3445555555653 3444444322 1 1 111223444
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 591 ASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 591 A~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
..+.=.-..++|.++++.|...+ ....|+.+|+...+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 44442345688888888776543 33468888875543
No 223
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.29 E-value=5.9e-06 Score=97.82 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=113.3
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccch
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE 464 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~ 464 (859)
....|+...|.......+.+.+..+.. ....|+|+|++||||+++|+++-... ..+|+.++|+.+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 345677777776665555444433211 12348999999999999999985433 46899999987643
Q ss_pred h-----hhcccch-------hhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc--cC--
Q 003000 465 I-----YVGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--EG-- 528 (859)
Q Consensus 465 ~-----~~g~~~~-------~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~--~~-- 528 (859)
. .+|...+ .-..+|+.+ ..+.+|||||+.+... ....|+..+... ..
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccCC
Confidence 2 2232211 012234433 3568999999998654 556666666531 11
Q ss_pred -----CCCeEEEeccCCCC-------CCCccCCCCCcccccccCCCCCHHHHH----HHHHHHHc----cCCC-CCcccH
Q 003000 529 -----RGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRM----EILKVHAR----KKPM-ADDVDY 587 (859)
Q Consensus 529 -----~~~vlVIatTN~~~-------~LdpaLlrpgRfd~~I~~~~Pd~~eR~----~Il~~~l~----~~~~-~~d~dl 587 (859)
..++.||++|+..- .+.+.|.. |+. .+.+..|...+|. .++..++. .... ...+.-
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 13577888776531 23334444 443 2444555555554 23333332 2221 112333
Q ss_pred HHHHhhC---CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003000 588 LAVASMT---DGMVGAELANIVEVAAINMMRDGRTEITTDDL 626 (859)
Q Consensus 588 ~~lA~~t---~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl 626 (859)
..+.... -.-..++|.+++..|...+ ....|+.+|+
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 3333332 2224567777777665433 3346777775
No 224
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.28 E-value=2.2e-06 Score=94.82 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=52.3
Q ss_pred CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCC------------CCCCCccCCCCCc
Q 003000 486 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR------------PDILDPALVRPGR 553 (859)
Q Consensus 486 p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~------------~~~LdpaLlrpgR 553 (859)
|+|+||||++-+.-. .+..|-..|+. +... +||.+||+ |..++..|+. |
T Consensus 279 pGVLFIDEvHmLDiE--------------cFsfLnralEs--~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIE--------------CFSFLNRALES--ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGSBHH--------------HHHHHHHHHTS--TT---EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhccHH--------------HHHHHHHHhcC--CCCc-EEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 678888888776433 33333334442 2223 56667774 4456777777 5
Q ss_pred ccccccCCCCCHHHHHHHHHHHHccCCCCCccc-HHHHHhhCCCCCHHHHHHHHH
Q 003000 554 FDRKIFIPKPGLIGRMEILKVHARKKPMADDVD-YLAVASMTDGMVGAELANIVE 607 (859)
Q Consensus 554 fd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d-l~~lA~~t~G~sgadL~~Lv~ 607 (859)
+ .+|...+++.++..+|++.++....+.-+.+ +..|+......|-+-..+|+.
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~ 393 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLIT 393 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhh
Confidence 5 3677889999999999999998765543222 334444333334443334443
No 225
>PRK08116 hypothetical protein; Validated
Probab=98.25 E-value=8e-07 Score=96.35 Aligned_cols=128 Identities=23% Similarity=0.284 Sum_probs=73.1
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhc----ccchhhhhHHHHHHhcCCcEEEhhhhHhhhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVG----VGASRVRSLYQEAKDNAPSVVFIDELDAVGR 499 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g----~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~ 499 (859)
.|++|+|++|||||+|+.+|++.+ +.+++.++.+++...+.. ........+++.. ...++|+|||+....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~- 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER- 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC-
Confidence 479999999999999999999976 677888888776554321 1111112333333 234699999984321
Q ss_pred ccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC-CC----CCccCCCCCcc---cccccCCCCCHHHHHHH
Q 003000 500 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-DI----LDPALVRPGRF---DRKIFIPKPGLIGRMEI 571 (859)
Q Consensus 500 ~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~-~~----LdpaLlrpgRf---d~~I~~~~Pd~~eR~~I 571 (859)
..+. ....|...++..... +..+|.|||.+ +. ++..+.+ |+ ...|.++-|+. |..+
T Consensus 192 --------~t~~---~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~ 255 (268)
T PRK08116 192 --------DTEW---AREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEI 255 (268)
T ss_pred --------CCHH---HHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHH
Confidence 1122 234444455543322 33466677764 22 4555555 53 22345555553 4444
Q ss_pred HH
Q 003000 572 LK 573 (859)
Q Consensus 572 l~ 573 (859)
.+
T Consensus 256 ~~ 257 (268)
T PRK08116 256 AK 257 (268)
T ss_pred HH
Confidence 43
No 226
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.24 E-value=3.7e-05 Score=87.48 Aligned_cols=195 Identities=22% Similarity=0.259 Sum_probs=117.6
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI 465 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~ 465 (859)
...+..++|.......+.+.+..+... ...|||.|.+||||-.+||+|-... ..||+.++|+.+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 445666778788877777766655332 2348999999999999999997644 789999999987654
Q ss_pred -----hhcccchhhhh-------HHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc-----cC
Q 003000 466 -----YVGVGASRVRS-------LYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----EG 528 (859)
Q Consensus 466 -----~~g~~~~~l~~-------lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~-----~~ 528 (859)
.+|+..+.+.. -|+. ...+-+|+|||..+-.. ...+||..+..- -+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFEl---AdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFEL---ADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred HHHHHHhcccccccccchhccCcceee---cCCCeEechhhccCCHH--------------HHHHHHHHHhhcceeecCC
Confidence 34433332211 1222 22457999999776443 667777776541 11
Q ss_pred ----CCCeEEEeccCCCCCCCccCCCCCccc-------ccccCCCCCHHHHHH----HHHHHHcc----CCC-CCccc--
Q 003000 529 ----RGNVITIASTNRPDILDPALVRPGRFD-------RKIFIPKPGLIGRME----ILKVHARK----KPM-ADDVD-- 586 (859)
Q Consensus 529 ----~~~vlVIatTN~~~~LdpaLlrpgRfd-------~~I~~~~Pd~~eR~~----Il~~~l~~----~~~-~~d~d-- 586 (859)
.-+|-||++||.- |-.++ +.|+|- .++.+..|...+|.. +..+++.+ .+. ...++
T Consensus 352 ~r~ikVDVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~ 428 (550)
T COG3604 352 DRTIKVDVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE 428 (550)
T ss_pred CceeEEEEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH
Confidence 1348999999973 11111 223331 144555666666643 22233322 222 11122
Q ss_pred -HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003000 587 -YLAVASMTDGMVGAELANIVEVAAINM 613 (859)
Q Consensus 587 -l~~lA~~t~G~sgadL~~Lv~~A~~~A 613 (859)
+..|..+.---..++|+++++.|+..|
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 333433333335699999999999887
No 227
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.24 E-value=3.5e-06 Score=85.05 Aligned_cols=97 Identities=28% Similarity=0.409 Sum_probs=65.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----hhcccch-------hhhhHHHHHHhcCCcEEEh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS-------RVRSLYQEAKDNAPSVVFI 491 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~-------~l~~lfe~a~~~~p~Il~i 491 (859)
..|+|+|++||||+.+|++|-... +.||+.++|+.+... .+|.... .-..+++.+ ..+.+||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceEEee
Confidence 459999999999999999998755 579999999886533 3443221 112455554 3458999
Q ss_pred hhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc--c---C----CCCeEEEeccCC
Q 003000 492 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--E---G----RGNVITIASTNR 540 (859)
Q Consensus 492 DEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~--~---~----~~~vlVIatTN~ 540 (859)
|||+.+... +...|+..|+.- . . ..++-||++||.
T Consensus 100 d~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-HH--------------HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhhHHH--------------HHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 999998765 677777777631 1 1 236899988875
No 228
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.23 E-value=9.9e-06 Score=99.16 Aligned_cols=195 Identities=22% Similarity=0.247 Sum_probs=110.1
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI- 465 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~- 465 (859)
..|.++.|.......+.+.+..+.. ....|+|+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 4566777777776666555554321 12358999999999999999997644 579999999875432
Q ss_pred ----hhcccchh-------hhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-------
Q 003000 466 ----YVGVGASR-------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------- 527 (859)
Q Consensus 466 ----~~g~~~~~-------l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~------- 527 (859)
.+|..... ....|+ ....+.+|||||+.+... ....|+..++...
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hhhhhcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCCCC
Confidence 22221110 011233 234578999999998654 5666766665321
Q ss_pred --CCCCeEEEeccCCCC--CCCccCCCCC---cccccccCCCCCHHHHHH----HHHHHHccC----CCC----CcccHH
Q 003000 528 --GRGNVITIASTNRPD--ILDPALVRPG---RFDRKIFIPKPGLIGRME----ILKVHARKK----PMA----DDVDYL 588 (859)
Q Consensus 528 --~~~~vlVIatTN~~~--~LdpaLlrpg---Rfd~~I~~~~Pd~~eR~~----Il~~~l~~~----~~~----~d~dl~ 588 (859)
...++-||++|+..- .+....+++. |+. .+.|..|...+|.+ +++.++... ... ...-+.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 124578888887642 2222222211 221 34455566666644 444444321 111 112233
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHH
Q 003000 589 AVASMTDGMVGAELANIVEVAAIN 612 (859)
Q Consensus 589 ~lA~~t~G~sgadL~~Lv~~A~~~ 612 (859)
.|....=-...++|.++++.|+..
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHh
Confidence 344443334567888888877654
No 229
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.20 E-value=1.5e-06 Score=92.66 Aligned_cols=129 Identities=21% Similarity=0.285 Sum_probs=77.3
Q ss_pred HHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc--cchh----------hhcccchh
Q 003000 408 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ--FVEI----------YVGVGASR 473 (859)
Q Consensus 408 ~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~--~~~~----------~~g~~~~~ 473 (859)
+...|.....++++++.++.| +.|.||||||||||+|+|++-+.+..+.|.... +... |+.|....
T Consensus 8 ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~ 87 (258)
T COG1120 8 LSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA 87 (258)
T ss_pred EEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC
Confidence 334566677888999999988 999999999999999999999887665554332 2111 33332210
Q ss_pred h--hhHHHHHHh-cCCcE-EEh-----hh--hHhh--------hhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEE
Q 003000 474 V--RSLYQEAKD-NAPSV-VFI-----DE--LDAV--------GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 534 (859)
Q Consensus 474 l--~~lfe~a~~-~~p~I-l~i-----DE--Id~l--------~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlV 534 (859)
. -.+++.+.. ..|.. .|- |+ ++.. +..|....-|||++.+..++..| .....+++
T Consensus 88 ~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL------aQ~~~iLL 161 (258)
T COG1120 88 PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL------AQETPILL 161 (258)
T ss_pred CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH------hcCCCEEE
Confidence 0 112222211 11111 111 11 1111 12234444599999999998888 56677787
Q ss_pred E-eccCCCC
Q 003000 535 I-ASTNRPD 542 (859)
Q Consensus 535 I-atTN~~~ 542 (859)
+ .+|++.|
T Consensus 162 LDEPTs~LD 170 (258)
T COG1120 162 LDEPTSHLD 170 (258)
T ss_pred eCCCccccC
Confidence 7 7777644
No 230
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=2.8e-05 Score=87.70 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=110.9
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchh----------h----hcccch-hhhhHHHH-
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----------Y----VGVGAS-RVRSLYQE- 480 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~----------~----~g~~~~-~l~~lfe~- 480 (859)
...-++++.+.|.||+|||.++.-+...+ .+..++++|.++... + .+.+.. .....|+.
T Consensus 171 e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h 250 (529)
T KOG2227|consen 171 ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH 250 (529)
T ss_pred hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 44556679999999999999998766544 234477777754322 1 111111 11122322
Q ss_pred HHhc-CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCC----CCccc
Q 003000 481 AKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVR----PGRFD 555 (859)
Q Consensus 481 a~~~-~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlr----pgRfd 555 (859)
.... .+-++++||+|.++.... .++..|. ++.. ..+..+++|+-.|..|.-|..|.+ .+.-+
T Consensus 251 ~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lF-ewp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P 317 (529)
T KOG2227|consen 251 TKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLF-EWPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKP 317 (529)
T ss_pred HhcccceEEEEechhhHHhhccc-----------ceeeeeh-hccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCC
Confidence 2222 356889999999974421 1332222 2222 235678888999998865543321 23345
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCCccc--HHHHHhhCCCCCHH--HHHHHHHHHHHHHHHh
Q 003000 556 RKIFIPKPGLIGRMEILKVHARKKPMADDVD--YLAVASMTDGMVGA--ELANIVEVAAINMMRD 616 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d--l~~lA~~t~G~sga--dL~~Lv~~A~~~A~~~ 616 (859)
..+.|++++.++..+||+..+.........+ +...|+...|.||. .+-.+|+.|..++...
T Consensus 318 ~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 318 KLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred ceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999998876554433 55667777777762 2334455555444433
No 231
>PRK06526 transposase; Provisional
Probab=98.17 E-value=4e-06 Score=90.16 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=45.9
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcc-cchhhhhHHHHHHhcCCcEEEhhhhHhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAVG 498 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~-~~~~l~~lfe~a~~~~p~Il~iDEId~l~ 498 (859)
+.+++|+||||||||+|+.+|+.++ +..+..+++.+++...... ....+...+... ..+++|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 4569999999999999999998865 5555556666655443211 111122222222 346799999998763
No 232
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.13 E-value=2.8e-06 Score=94.93 Aligned_cols=190 Identities=21% Similarity=0.224 Sum_probs=104.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh----hhcccchhhhhHHH--HHHhcCCcEEEhhhhHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI----YVGVGASRVRSLYQ--EAKDNAPSVVFIDELDAVGRER 501 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~----~~g~~~~~l~~lfe--~a~~~~p~Il~iDEId~l~~~r 501 (859)
++||+|.||+|||.|++.++.-. +..+++++...... .+......-...++ .+-....+|++|||+|.+...
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~-pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~- 136 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLA-PRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED- 136 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT--SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH-
T ss_pred ceeeccchhhhHHHHHHHHHhhC-CceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch-
Confidence 49999999999999999887654 33344443321111 00000000000111 112234579999999998543
Q ss_pred CCcCCCCchhHHHHHHHHHHhhccc----c-------CCCCeEEEeccCCCC-------------CCCccCCCCCccccc
Q 003000 502 GLIKGSGGQERDATLNQLLVCLDGF----E-------GRGNVITIASTNRPD-------------ILDPALVRPGRFDRK 557 (859)
Q Consensus 502 ~~~~~sgge~~r~~l~~LL~~ld~~----~-------~~~~vlVIatTN~~~-------------~LdpaLlrpgRfd~~ 557 (859)
....|+..|+.- . -+.+.-|++++|+.. .+++.|++ |||-+
T Consensus 137 -------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLi 201 (331)
T PF00493_consen 137 -------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLI 201 (331)
T ss_dssp -------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEE
T ss_pred -------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEE
Confidence 456666666641 1 124577889998765 37889999 99988
Q ss_pred ccC-CCCCHHHHHHHHHHHHccCCCC---------C---ccc------HHHHHh--------------------------
Q 003000 558 IFI-PKPGLIGRMEILKVHARKKPMA---------D---DVD------YLAVAS-------------------------- 592 (859)
Q Consensus 558 I~~-~~Pd~~eR~~Il~~~l~~~~~~---------~---d~d------l~~lA~-------------------------- 592 (859)
+.+ ..|+.+.-..|.++.+...... . .++ +-..++
T Consensus 202 f~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~ 281 (331)
T PF00493_consen 202 FLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKES 281 (331)
T ss_dssp ECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCH
T ss_pred EEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccc
Confidence 765 5666554444544433222100 0 000 111111
Q ss_pred ----hCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 593 ----MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 593 ----~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
.....|.+.|..|++-|...|..+-+..|+.+|+..|+..+.
T Consensus 282 ~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 282 KSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp HCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 012356788889999999899889999999999999998764
No 233
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.12 E-value=1.3e-06 Score=89.86 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=44.6
Q ss_pred HHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 405 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 405 l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
++++.+.|+....++++++.+.+| +.|+||+|+|||||+|+|.+--.+..+.|..
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i 61 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEE
Confidence 345667788888899999999988 9999999999999999998866555554443
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.12 E-value=2.5e-05 Score=83.46 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=49.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcc---cchhhhhHHHHHHhcCCcEEEhhhhHhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV---GASRVRSLYQEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~---~~~~l~~lfe~a~~~~p~Il~iDEId~l 497 (859)
.+++|+|+||||||+|+.+||..+ +..+..++.+++.....+. .......+++... ..++|+|||+...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 479999999999999999999987 6677888887776542211 1112234455443 5679999999764
No 235
>PRK08181 transposase; Validated
Probab=98.11 E-value=5.4e-06 Score=89.76 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=48.6
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcc-cchhhhhHHHHHHhcCCcEEEhhhhHhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAVG 498 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~-~~~~l~~lfe~a~~~~p~Il~iDEId~l~ 498 (859)
..+++|+||||||||+|+.+|+.++ +..+.+++..+++..+... ........+... ..+++|+|||+....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 3469999999999999999999755 6677778877766543211 111222344433 346799999997653
No 236
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.11 E-value=2.4e-05 Score=82.96 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=104.4
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc-c--ccEEEeeccccch-------------h-h-------hcccc-hhhhhHHHHH
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA-G--VNFFSISASQFVE-------------I-Y-------VGVGA-SRVRSLYQEA 481 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el-~--~~~~~is~s~~~~-------------~-~-------~g~~~-~~l~~lfe~a 481 (859)
.++++|||+|+||-|.+.+|.+++ | ..-..+....|.. . + .|... --+..+...+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 458999999999999999998877 2 2211111111110 0 1 11111 1124444444
Q ss_pred Hhc---------CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCC
Q 003000 482 KDN---------APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPG 552 (859)
Q Consensus 482 ~~~---------~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpg 552 (859)
.+. ...+++|.|.|.+..+ ....|-..|+.+. +++-+|..+|....+-+++.+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS-- 176 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS-- 176 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--
Confidence 332 3458999999998655 6677777788554 466777788999999899988
Q ss_pred cccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHH
Q 003000 553 RFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 602 (859)
Q Consensus 553 Rfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL 602 (859)
|. ..|.+|.|+.++...++...+.+.++. +..-+..+|..+.|--.+.|
T Consensus 177 RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAl 226 (351)
T KOG2035|consen 177 RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRAL 226 (351)
T ss_pred he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHH
Confidence 43 368999999999999999888776554 33346778888877555544
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=98.10 E-value=3.8e-06 Score=90.68 Aligned_cols=70 Identities=33% Similarity=0.442 Sum_probs=46.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhc-ccchhhhhHHHHHHhcCCcEEEhhhhHhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVG-VGASRVRSLYQEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g-~~~~~l~~lfe~a~~~~p~Il~iDEId~l 497 (859)
.+++|+||||||||+|+.+|+..+ +..+..+++.++...+.. .....+..++... ...+++++|||+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 459999999999999999998764 555666666665533211 1112233445443 245679999999764
No 238
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.10 E-value=6.9e-07 Score=99.32 Aligned_cols=56 Identities=27% Similarity=0.304 Sum_probs=45.8
Q ss_pred HHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 406 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 406 ~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
+++.+.|++.....++++.+..| +.|.||+||||||++|+|||...+..+.|....
T Consensus 9 ~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G 66 (352)
T COG3842 9 RNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG 66 (352)
T ss_pred EeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 44556677666778899999998 889999999999999999999888877765543
No 239
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.08 E-value=1.5e-06 Score=88.35 Aligned_cols=75 Identities=24% Similarity=0.170 Sum_probs=48.9
Q ss_pred CccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccc-----hhhhhHHHHHHhcCCcEEEhhhhH
Q 003000 423 VRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGA-----SRVRSLYQEAKDNAPSVVFIDELD 495 (859)
Q Consensus 423 l~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~-----~~l~~lfe~a~~~~p~Il~iDEId 495 (859)
+.++.| +.|+||||+|||||++.|+|...+..+.+......-.|..+.. ..-+-.+..+....|.++++||--
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 444555 8999999999999999999988777777665432111221110 111223444556778999999975
Q ss_pred hh
Q 003000 496 AV 497 (859)
Q Consensus 496 ~l 497 (859)
.-
T Consensus 100 s~ 101 (177)
T cd03222 100 AY 101 (177)
T ss_pred cc
Confidence 43
No 240
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.08 E-value=1.9e-06 Score=101.36 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=46.4
Q ss_pred HHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 406 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 406 ~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
.++...|+...++.+.++.+..| +.|+|+||+|||||+|+|+|...+..+.|+...
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 34445567777888888888877 999999999999999999999988888776654
No 241
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.07 E-value=8.6e-07 Score=98.08 Aligned_cols=55 Identities=27% Similarity=0.389 Sum_probs=42.1
Q ss_pred HHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 407 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 407 ~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
++.+.|++.....++++.+..| +.|+||+|||||||+|+|||-..+..++|..++
T Consensus 8 ~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred eeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 3444454432456777888877 999999999999999999999888887776544
No 242
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.07 E-value=8.3e-06 Score=97.42 Aligned_cols=222 Identities=21% Similarity=0.233 Sum_probs=119.3
Q ss_pred ccCccCchHHHHHHHHHHHhcccchhhhccCCccC--ceEEEECCCCCCchhHHHhhhhcccccEEEe-eccccchhhhc
Q 003000 392 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP--GGILLCGPPGVGKTLLAKAVAGEAGVNFFSI-SASQFVEIYVG 468 (859)
Q Consensus 392 f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~--~gvLL~GPpGtGKTtLakaLA~el~~~~~~i-s~s~~~~~~~g 468 (859)
.+.+-|...++..+- ...|+.......-|..+. -++||+|.||+|||.|++.+++.+...++.- .++.- +|
T Consensus 285 aPsIyG~e~VKkAil--LqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~G 358 (682)
T COG1241 285 APSIYGHEDVKKAIL--LQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AG 358 (682)
T ss_pred cccccCcHHHHHHHH--HHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cC
Confidence 345567777654442 222333322222222222 2499999999999999999998765433321 11111 11
Q ss_pred ccchhhhhHH--HH------HHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc-----------cCC
Q 003000 469 VGASRVRSLY--QE------AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGR 529 (859)
Q Consensus 469 ~~~~~l~~lf--e~------a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~-----------~~~ 529 (859)
-+...++.-+ +. +--..++|..|||+|++-.. ..+.+...|+.. .-+
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHHHHHHhcEeeecccceeeecc
Confidence 1111111111 10 01234679999999987432 334444444431 112
Q ss_pred CCeEEEeccCCCC-------------CCCccCCCCCcccccccCC-CCCHHHHHH----HHHHHHccC------------
Q 003000 530 GNVITIASTNRPD-------------ILDPALVRPGRFDRKIFIP-KPGLIGRME----ILKVHARKK------------ 579 (859)
Q Consensus 530 ~~vlVIatTN~~~-------------~LdpaLlrpgRfd~~I~~~-~Pd~~eR~~----Il~~~l~~~------------ 579 (859)
..+-|++++|+.. .|++.|++ |||..+.+. .|+.+.=.. |+..|....
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~ 502 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDE 502 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccc
Confidence 3456788888865 37889999 999876554 455442222 444442111
Q ss_pred ---------------------CCCCcccHHHHH-------h--------hCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 580 ---------------------PMADDVDYLAVA-------S--------MTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 580 ---------------------~~~~d~dl~~lA-------~--------~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
+...+.....|. . .+-..|.++|..+++-|-..|..+-+..|+.
T Consensus 503 ~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 503 VEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred cccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 111110011110 0 1122567888888888877777777778888
Q ss_pred HHHHHHHHHHHc
Q 003000 624 DDLLQAAQIEER 635 (859)
Q Consensus 624 edl~~Al~~~~~ 635 (859)
+|+.+|+..+..
T Consensus 583 eD~~eAi~lv~~ 594 (682)
T COG1241 583 EDVDEAIRLVDF 594 (682)
T ss_pred HHHHHHHHHHHH
Confidence 888888776543
No 243
>PRK12377 putative replication protein; Provisional
Probab=98.07 E-value=3.5e-05 Score=82.57 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=46.7
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhccc--chhhhhHHHHHHhcCCcEEEhhhhHhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVG--ASRVRSLYQEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~--~~~l~~lfe~a~~~~p~Il~iDEId~l 497 (859)
.+++|+||||||||+|+.+|++.+ +..++.++..++....-..- ......+++.+ ...++|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 579999999999999999999977 56677777777655421110 00112233333 34679999999654
No 244
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.07 E-value=3e-05 Score=82.73 Aligned_cols=91 Identities=11% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 003000 541 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD-YLAVASMTDGMVGAELANIVEVAAINMMRDGRT 619 (859)
Q Consensus 541 ~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d-l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~ 619 (859)
|..++-.|+. |. .+|.-.+++.++...||+..+....+.-+.| ++.|......-|-+--.+|+..|...+.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4556667766 44 2567778999999999999987664443222 344444444455666678999999999999888
Q ss_pred ccCHHHHHHHHHHHH
Q 003000 620 EITTDDLLQAAQIEE 634 (859)
Q Consensus 620 ~It~edl~~Al~~~~ 634 (859)
.+..+|+..+.....
T Consensus 416 ~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFL 430 (454)
T ss_pred eeehhHHHHHHHHHh
Confidence 999999999987654
No 245
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.07 E-value=1.7e-05 Score=85.79 Aligned_cols=159 Identities=20% Similarity=0.243 Sum_probs=95.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhh---hhHHHHHHh-------cCCcEEEhhhhHhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRV---RSLYQEAKD-------NAPSVVFIDELDAV 497 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l---~~lfe~a~~-------~~p~Il~iDEId~l 497 (859)
+.|+|||||+|||+..-+.|..+..+...-++--..+.--..+...+ -..|...+. ..+..+++||.|..
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM 143 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM 143 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh
Confidence 68999999999999999999987554221111000000000111111 223444442 25678999999998
Q ss_pred hhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHc
Q 003000 498 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 498 ~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
..+ ..+.|-..++.+.. ++.|..-+|++..+.|++++ ||. .+.|.+.+.......+..++.
T Consensus 144 T~~--------------AQnALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 144 TRD--------------AQNALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred hHH--------------HHHHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHh
Confidence 655 66777777775544 55555667999999999998 776 456666666677777777765
Q ss_pred cCCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHH
Q 003000 578 KKPMADD-VDYLAVASMTDGMVGAELANIVEVA 609 (859)
Q Consensus 578 ~~~~~~d-~dl~~lA~~t~G~sgadL~~Lv~~A 609 (859)
.....-. .-...++..+. .|+...++..
T Consensus 205 ~e~~~~~~~~~~a~~r~s~----gDmr~a~n~L 233 (360)
T KOG0990|consen 205 SEQKETNPEGYSALGRLSV----GDMRVALNYL 233 (360)
T ss_pred cchhhcCHHHHHHHHHHhH----HHHHHHHHHH
Confidence 4433322 22333444443 3454444443
No 246
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=3.4e-06 Score=86.36 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=41.0
Q ss_pred HhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 410 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 410 ~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+....++..+++....| +.|+||||+|||||+|+|.|++.+..+.+...
T Consensus 9 ~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~ 61 (259)
T COG4559 9 YSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61 (259)
T ss_pred EEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeC
Confidence 3344555667778888877 89999999999999999999998877776654
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.06 E-value=8.4e-06 Score=77.65 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=45.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcc--------cccEEEeeccccchh---------hhcc------cchhh-hhHHHHHHh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA--------GVNFFSISASQFVEI---------YVGV------GASRV-RSLYQEAKD 483 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el--------~~~~~~is~s~~~~~---------~~g~------~~~~l-~~lfe~a~~ 483 (859)
.++|+||+|+|||++++.++..+ ..+++.+++...... .++. ....+ ..+.+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 48999999999999999999977 567777776554311 0111 11111 334444555
Q ss_pred cCCcEEEhhhhHhhh
Q 003000 484 NAPSVVFIDELDAVG 498 (859)
Q Consensus 484 ~~p~Il~iDEId~l~ 498 (859)
....+|+|||+|.+.
T Consensus 86 ~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 86 RRVVLLVIDEADHLF 100 (131)
T ss_dssp CTEEEEEEETTHHHH
T ss_pred cCCeEEEEeChHhcC
Confidence 555589999999973
No 248
>PF13173 AAA_14: AAA domain
Probab=98.05 E-value=8.8e-06 Score=78.12 Aligned_cols=68 Identities=28% Similarity=0.354 Sum_probs=45.1
Q ss_pred eEEEECCCCCCchhHHHhhhhccc--ccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG--VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~--~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l 497 (859)
-++|+||.||||||+++.++..+. ...+++++.+......... . +...+.......+.++||||+..+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 389999999999999999998776 6777888776443211100 0 112222222225678999999887
No 249
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.03 E-value=2.9e-05 Score=90.07 Aligned_cols=177 Identities=23% Similarity=0.225 Sum_probs=101.3
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----hhcccchhh-------hhHHHHHHhcCCcEEEh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFI 491 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l-------~~lfe~a~~~~p~Il~i 491 (859)
..++|+|++||||+++|+++.... +.+|+.++|+.+... .+|.....+ ...++ ....+.+||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEE
Confidence 348999999999999999997654 468999999876432 122111100 01122 234568999
Q ss_pred hhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---------CCCCeEEEeccCCC-------CCCCccCCCCCccc
Q 003000 492 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFD 555 (859)
Q Consensus 492 DEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~---------~~~~vlVIatTN~~-------~~LdpaLlrpgRfd 555 (859)
|||+.+... ....|+..++... ...++.||++|+.. ..+.+.|.. |+.
T Consensus 240 ~~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 303 (445)
T TIGR02915 240 DEIGDLPLN--------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA 303 (445)
T ss_pred echhhCCHH--------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc
Confidence 999998654 6666776665321 01357888888654 223333333 332
Q ss_pred ccccCCCCCHHHHHH----HHHHHHccC----CCC-Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 556 RKIFIPKPGLIGRME----ILKVHARKK----PMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~----Il~~~l~~~----~~~-~d~d---l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
.+.+..|...+|.+ ++..++... ... ..++ +..|..+.--...++|.++++.|...+ ....|+.
T Consensus 304 -~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~ 379 (445)
T TIGR02915 304 -EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITA 379 (445)
T ss_pred -cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccH
Confidence 34455555566654 444444321 111 1122 344444443345688888888877543 2346777
Q ss_pred HHH
Q 003000 624 DDL 626 (859)
Q Consensus 624 edl 626 (859)
+++
T Consensus 380 ~~l 382 (445)
T TIGR02915 380 EDL 382 (445)
T ss_pred HHc
Confidence 765
No 250
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.01 E-value=4.5e-06 Score=89.80 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=44.7
Q ss_pred HHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 406 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 406 ~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
+++.+.+.....+.++++.++.| +.|+||+|+|||||+|+|||-..+..++|..+.
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~ 63 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNG 63 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECC
Confidence 44455565555666788888888 999999999999999999999988887776554
No 251
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.01 E-value=8.1e-06 Score=81.81 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=53.6
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc--cc--------hh---hhcccch--hhhhHH
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ--FV--------EI---YVGVGAS--RVRSLY 478 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~--~~--------~~---~~g~~~~--~l~~lf 478 (859)
..+.++++.++.| +.|.||||+|||||+++|+|...+..+.+.... .. .. |+.+-.. .-+-.+
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~l 93 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEI 93 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHH
Confidence 3567777777777 999999999999999999998876666544322 10 00 1111111 112245
Q ss_pred HHHHhcCCcEEEhhhhHhh
Q 003000 479 QEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 479 e~a~~~~p~Il~iDEId~l 497 (859)
..+....|.++++||...-
T Consensus 94 aral~~~p~illlDEP~~~ 112 (163)
T cd03216 94 ARALARNARLLILDEPTAA 112 (163)
T ss_pred HHHHhcCCCEEEEECCCcC
Confidence 5556678999999997543
No 252
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=1.5e-05 Score=86.93 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=81.0
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcccc----------------cEEEeeccccchhhhcccchhhhhHHHHHHh---
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV----------------NFFSISASQFVEIYVGVGASRVRSLYQEAKD--- 483 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~----------------~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~--- 483 (859)
-+++..++|+||.|+||+++|..+|..+-. ++..+....-. .. -+...++.+.+.+..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-~~--I~idqiR~l~~~~~~~p~ 92 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-RL--HSIETPRAIKKQIWIHPY 92 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-Cc--CcHHHHHHHHHHHhhCcc
Confidence 356777999999999999999999876522 22222111000 00 012233444444432
Q ss_pred -cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCC
Q 003000 484 -NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 562 (859)
Q Consensus 484 -~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~ 562 (859)
....|++||++|.+... ..|.||..|+ .+..++++|..|+.++.+.|.+++ |.. .+.|++
T Consensus 93 e~~~kv~ii~~ad~mt~~--------------AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~ 153 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLD--------------AISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPM 153 (290)
T ss_pred CCCceEEEEechhhcCHH--------------HHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccc
Confidence 23468999999998765 7899999999 567889999899999999999998 543 566665
Q ss_pred C
Q 003000 563 P 563 (859)
Q Consensus 563 P 563 (859)
+
T Consensus 154 ~ 154 (290)
T PRK05917 154 E 154 (290)
T ss_pred h
Confidence 4
No 253
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.99 E-value=6.4e-05 Score=87.27 Aligned_cols=226 Identities=15% Similarity=0.196 Sum_probs=126.9
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccC--CccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRG--VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 467 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~g--l~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 467 (859)
-.|+.+-|.+.++.++--.. ++.......-| ++-.-+|+|+|.||+|||-++++.++.+.... ++++..... .
T Consensus 342 Sl~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~v-YtsGkaSSa--A 416 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSV-YTSGKASSA--A 416 (764)
T ss_pred hhCccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcce-EecCccccc--c
Confidence 34677778877776664322 33322222222 33333599999999999999999998765443 333221111 0
Q ss_pred cccchhh------hhHHHHH--HhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc-----------cC
Q 003000 468 GVGASRV------RSLYQEA--KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EG 528 (859)
Q Consensus 468 g~~~~~l------~~lfe~a--~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~-----------~~ 528 (859)
|-+..-+ ...++.- .-...+|-.|||+|++... -...+...|+.- .-
T Consensus 417 GLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 417 GLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred cceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHHHHHHhheehheecceEEee
Confidence 1111000 0011110 1123468899999998542 223444555431 11
Q ss_pred CCCeEEEeccCCCC-------------CCCccCCCCCcccccc-cCCCCCHHHHHHHHHHHHccC---------------
Q 003000 529 RGNVITIASTNRPD-------------ILDPALVRPGRFDRKI-FIPKPGLIGRMEILKVHARKK--------------- 579 (859)
Q Consensus 529 ~~~vlVIatTN~~~-------------~LdpaLlrpgRfd~~I-~~~~Pd~~eR~~Il~~~l~~~--------------- 579 (859)
+.+.-||+++|+.. .+++++++ |||..+ -+..|+...=..|-++.+...
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~ 560 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTL 560 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccH
Confidence 23456888888764 26889999 999654 456676655444444333221
Q ss_pred --------------CCCCccc-------HHHHH--------hhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 580 --------------PMADDVD-------YLAVA--------SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 580 --------------~~~~d~d-------l~~lA--------~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
|.....- +..+- ..+-+.|.++|+.+++-+-..|...-+..+|.+|+.+|+
T Consensus 561 e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~ 640 (764)
T KOG0480|consen 561 EQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAV 640 (764)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHH
Confidence 0000000 00000 112256788888888887777777777788999988888
Q ss_pred HHHHcC
Q 003000 631 QIEERG 636 (859)
Q Consensus 631 ~~~~~g 636 (859)
+.....
T Consensus 641 eLlk~S 646 (764)
T KOG0480|consen 641 ELLKKS 646 (764)
T ss_pred HHHHhh
Confidence 876554
No 254
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=7.9e-06 Score=85.66 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=39.3
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
..++++++.+..| +.|+|+||+|||||+|.|||...+..+.+.+..
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G 88 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc
Confidence 4567788888887 999999999999999999999988887776543
No 255
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=6.3e-06 Score=87.67 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=75.8
Q ss_pred HHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecccc---------chhhhcccch--
Q 003000 406 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF---------VEIYVGVGAS-- 472 (859)
Q Consensus 406 ~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~---------~~~~~g~~~~-- 472 (859)
+++...|.+...+.++++.++.| +.|+||||+|||||+|+|.|.+.+..+++..... .-.|+.|...
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d 87 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVD 87 (254)
T ss_pred eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccC
Confidence 34444555434778888988887 9999999999999999999999888887764332 1114444221
Q ss_pred --hhhhHHHHHHhcC---CcEEE------hhhhHhhhh--------ccCCcCCCCchhHHHHHHHHHHhhccccCCCCeE
Q 003000 473 --RVRSLYQEAKDNA---PSVVF------IDELDAVGR--------ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVI 533 (859)
Q Consensus 473 --~l~~lfe~a~~~~---p~Il~------iDEId~l~~--------~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vl 533 (859)
--..+++-+.-.. .+.+- -.+++.++. ++....-|||+..|..++..| ..++.++
T Consensus 88 ~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL------~~~p~ll 161 (254)
T COG1121 88 RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL------AQNPDLL 161 (254)
T ss_pred CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh------ccCCCEE
Confidence 0023344333221 11111 033443332 233333499999999998888 4556666
Q ss_pred EE
Q 003000 534 TI 535 (859)
Q Consensus 534 VI 535 (859)
++
T Consensus 162 lL 163 (254)
T COG1121 162 LL 163 (254)
T ss_pred Ee
Confidence 65
No 256
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=2.2e-06 Score=89.41 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=38.2
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 33334677788888877 9999999999999999999988766666543
No 257
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.95 E-value=3e-05 Score=93.17 Aligned_cols=100 Identities=20% Similarity=0.293 Sum_probs=63.0
Q ss_pred CeEEEeccCCC--CCCCccCCCCCccc---ccccCCC--C-CHHHHHHHHHHHHccCC---CCCcccH---HHHH---hh
Q 003000 531 NVITIASTNRP--DILDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKVHARKKP---MADDVDY---LAVA---SM 593 (859)
Q Consensus 531 ~vlVIatTN~~--~~LdpaLlrpgRfd---~~I~~~~--P-d~~eR~~Il~~~l~~~~---~~~d~dl---~~lA---~~ 593 (859)
++.||+++|.. ..+||+|.. ||. ..+.|.. + +.+.+..+++...+... ....++- ..+. .+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 56788888774 567899987 775 4455542 2 24445555553332211 1112232 2222 11
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003000 594 TDG------MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 594 t~G------~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~ 632 (859)
..| ...++|..+++.|...|...+...++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 347899999999999999999999999999988754
No 258
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.95 E-value=8.9e-05 Score=86.74 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=69.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeecccc----chhhhcccchhhhhHHHH--HHhcCCcEEEhhhhHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF----VEIYVGVGASRVRSLYQE--AKDNAPSVVFIDELDAVGRER 501 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~----~~~~~g~~~~~l~~lfe~--a~~~~p~Il~iDEId~l~~~r 501 (859)
+|||+|.||||||.+++.+.+-+..-.+ .++-.- ...|+......-+-+.+. +-....+|..|||+|++...
T Consensus 464 NILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dS- 541 (804)
T KOG0478|consen 464 NILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDS- 541 (804)
T ss_pred eEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHH-
Confidence 4999999999999999999886643322 222110 011221111100001111 01123568899999998433
Q ss_pred CCcCCCCchhHHHHHHHHHHhhc------cc--cCCCCeEEEeccCCCC-------------CCCccCCCCCcccccc-c
Q 003000 502 GLIKGSGGQERDATLNQLLVCLD------GF--EGRGNVITIASTNRPD-------------ILDPALVRPGRFDRKI-F 559 (859)
Q Consensus 502 ~~~~~sgge~~r~~l~~LL~~ld------~~--~~~~~vlVIatTN~~~-------------~LdpaLlrpgRfd~~I-~ 559 (859)
.+.+|.+.|++=. |+ .-+...-||++.|+.. .|+|.|++ |||.++ -
T Consensus 542 ----------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyll 609 (804)
T KOG0478|consen 542 ----------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLL 609 (804)
T ss_pred ----------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEE
Confidence 1224433332210 11 1134567888988543 37899999 999765 4
Q ss_pred CCCCCHH
Q 003000 560 IPKPGLI 566 (859)
Q Consensus 560 ~~~Pd~~ 566 (859)
+..||..
T Consensus 610 lD~~DE~ 616 (804)
T KOG0478|consen 610 LDKPDER 616 (804)
T ss_pred ecCcchh
Confidence 5566655
No 259
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.4e-05 Score=79.01 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=40.6
Q ss_pred ccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 413 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 413 ~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
....+|.++++.+..| +.+.||||+|||||+|.|||-+.+..++|.+.
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 3456788888888777 88999999999999999999998888777654
No 260
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.93 E-value=2.8e-05 Score=77.04 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=44.3
Q ss_pred HHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 403 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 403 ~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.++.++...-.+..++.+.++.+..| ++|+||+|||||||.|++|.-..+..+.+.
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~ 61 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE
Confidence 34455555556677788888888877 999999999999999999998877666554
No 261
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.93 E-value=4.6e-06 Score=84.98 Aligned_cols=69 Identities=32% Similarity=0.504 Sum_probs=46.8
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcc-cchhhhhHHHHHHhcCCcEEEhhhhHh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDA 496 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~-~~~~l~~lfe~a~~~~p~Il~iDEId~ 496 (859)
..|++|+||+|||||+||.+|+.++ +.....++..+++...-.. ........++... .+.+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 4679999999999999999999866 7778888888877653221 1122344555544 346899999843
No 262
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.92 E-value=1.2e-05 Score=78.94 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=53.3
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccchh-hhcccchh--hhhHHHHHHhcCCcEEEh
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASR--VRSLYQEAKDNAPSVVFI 491 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~-~~g~~~~~--l~~lfe~a~~~~p~Il~i 491 (859)
.+.++++.+..| ++|.||||+|||||+++|+|...+..+.+........ |+.+-... -+-.+..+....|.++++
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 456667777766 8999999999999999999998777776654331111 21111111 122344555677889999
Q ss_pred hhhHhh
Q 003000 492 DELDAV 497 (859)
Q Consensus 492 DEId~l 497 (859)
||-..-
T Consensus 95 DEP~~~ 100 (144)
T cd03221 95 DEPTNH 100 (144)
T ss_pred eCCccC
Confidence 997543
No 263
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.91 E-value=3.8e-06 Score=85.42 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=34.8
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
..+.++++.+..| ++|.||||+|||||+++|+|...+.-+.+.
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~ 57 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3567777777776 999999999999999999998766555543
No 264
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=9.7e-06 Score=80.42 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=52.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecccc--ch-------h---hh---cccchhhhhHHH
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--VE-------I---YV---GVGASRVRSLYQ 479 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~--~~-------~---~~---g~~~~~l~~lfe 479 (859)
.+..+++.++.| ++|+||||+|||||+++|++.+.+..+.+..... .. . |+ ..+.. -+-.+.
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~-~r~~l~ 92 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQR-QRVALA 92 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHH-HHHHHH
Confidence 566667777766 9999999999999999999988776666554331 10 0 11 11111 122244
Q ss_pred HHHhcCCcEEEhhhhHhh
Q 003000 480 EAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 480 ~a~~~~p~Il~iDEId~l 497 (859)
.+....|.++++||...-
T Consensus 93 ~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 93 RALLLNPDLLLLDEPTSG 110 (157)
T ss_pred HHHhcCCCEEEEeCCCcC
Confidence 445566889999998653
No 265
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.91 E-value=1.2e-05 Score=83.77 Aligned_cols=160 Identities=25% Similarity=0.266 Sum_probs=83.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccc---cEEEeec-cccch----hh-------------hc-----------------
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGV---NFFSISA-SQFVE----IY-------------VG----------------- 468 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~---~~~~is~-s~~~~----~~-------------~g----------------- 468 (859)
..++|+||.|+|||+|++.+...+.. ..+++.. ..... .. ++
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSE 100 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-G
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchh
Confidence 45899999999999999999987722 1111211 11000 00 00
Q ss_pred ccchhhhhHHHHHHhcC-CcEEEhhhhHhhh-hccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC-----
Q 003000 469 VGASRVRSLYQEAKDNA-PSVVFIDELDAVG-RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP----- 541 (859)
Q Consensus 469 ~~~~~l~~lfe~a~~~~-p~Il~iDEId~l~-~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~----- 541 (859)
.....+..+++.+.... ..+++|||++.+. ... .....+..|...++......++.+|.++...
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~ 171 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEE 171 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHH
Confidence 01122344555554433 3789999999987 211 1122555566666654445555444333221
Q ss_pred -CCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCC-C-CCcccHHHHHhhCCCCC
Q 003000 542 -DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-M-ADDVDYLAVASMTDGMV 598 (859)
Q Consensus 542 -~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~-~-~~d~dl~~lA~~t~G~s 598 (859)
..-.+.+.. |+.. +.+++.+.++..+++...+.... + .++.++..+...|.|..
T Consensus 172 ~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 172 FLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp TT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred hhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 112333433 7877 99999999999999998876651 1 25667788888887754
No 266
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=1.3e-05 Score=81.11 Aligned_cols=41 Identities=29% Similarity=0.330 Sum_probs=33.9
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
.+.++++.+..| +.|+||||+|||||++.|+|...+..+.+
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 567777887777 99999999999999999999876555544
No 267
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.89 E-value=0.0001 Score=86.81 Aligned_cols=170 Identities=19% Similarity=0.230 Sum_probs=88.4
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEee-ccccc------hhhhcccc------h---hhhhH-HHHHHh-------
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS-ASQFV------EIYVGVGA------S---RVRSL-YQEAKD------- 483 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is-~s~~~------~~~~g~~~------~---~l~~l-fe~a~~------- 483 (859)
-++|+||+||||||+++.||.+++..+.+.. ...+. ..|.+... . .+..+ +...+.
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g 126 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSG 126 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccC
Confidence 4788999999999999999999988776642 11110 00111100 0 01111 111111
Q ss_pred ----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCC-CeEEEec-c------CCC--------CC
Q 003000 484 ----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRG-NVITIAS-T------NRP--------DI 543 (859)
Q Consensus 484 ----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~-~vlVIat-T------N~~--------~~ 543 (859)
....||+|+|+-.+... .. ...+..+..++ . .... .++||.+ + |.. ..
T Consensus 127 ~~~~~~~kvILVEDlPN~~~~------~~-~~f~~~L~~~l---~--~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L 194 (519)
T PF03215_consen 127 SNSSSNKKVILVEDLPNVFHR------DT-SRFREALRQYL---R--SSRCLPLVFIISETESLSGDNSYRSNSFTAERL 194 (519)
T ss_pred CCcCCCceEEEeeccccccch------hH-HHHHHHHHHHH---H--cCCCCCEEEEEecccccCCCCcccccchhhhhc
Confidence 23568999998644321 11 22223333333 2 1222 5666655 1 111 13
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC--------CCCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--------PMADDVD-YLAVASMTDGMVGAELANIVEVAAINMM 614 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~--------~~~~d~d-l~~lA~~t~G~sgadL~~Lv~~A~~~A~ 614 (859)
+++.++...++ .+|.|.+-...-..+-|...+... ....... ++.|+..+. +||+.+++.-...+.
T Consensus 195 ~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 195 FPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred cCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 55566543333 367888777665555555443322 1222222 566776654 588888887766665
No 268
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.87 E-value=3.9e-06 Score=86.99 Aligned_cols=44 Identities=36% Similarity=0.379 Sum_probs=36.5
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 4567777877777 9999999999999999999988776666643
No 269
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.87 E-value=4.4e-06 Score=87.08 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=36.3
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.+..| ++|.||||+|||||+++|+|.+.+..+.+..
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34567778887777 8999999999999999999988766665543
No 270
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=1.7e-05 Score=80.00 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=34.3
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.++.| ++|.||||+|||||+++|+|...+..+.+.
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~ 60 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 456677777776 999999999999999999998866555543
No 271
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.84 E-value=3.4e-05 Score=89.89 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=103.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----hhcccchhhhhHH----HHHHhcCCcEEEhhhhH
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRVRSLY----QEAKDNAPSVVFIDELD 495 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l~~lf----e~a~~~~p~Il~iDEId 495 (859)
.+++.|.+||||+++++++.... ..+|+.++|+.+... .+|.....+.... ........+.+|||||+
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~ 238 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIG 238 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchh
Confidence 58999999999999999997654 568999999876432 2222111110000 00112345789999999
Q ss_pred hhhhccCCcCCCCchhHHHHHHHHHHhhcccc---------CCCCeEEEeccCCCC-------CCCccCCCCCccc-ccc
Q 003000 496 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------ILDPALVRPGRFD-RKI 558 (859)
Q Consensus 496 ~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~---------~~~~vlVIatTN~~~-------~LdpaLlrpgRfd-~~I 558 (859)
.+... ....|+..++... ...++-||++|+..- .+.+.|.. |+. ..|
T Consensus 239 ~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i 302 (463)
T TIGR01818 239 DMPLD--------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRI 302 (463)
T ss_pred hCCHH--------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCccee
Confidence 98654 4556665554311 112567887776531 23333333 443 255
Q ss_pred cCCCCC--HHHHHHHHHHHHccC----CCC-Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003000 559 FIPKPG--LIGRMEILKVHARKK----PMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ 628 (859)
Q Consensus 559 ~~~~Pd--~~eR~~Il~~~l~~~----~~~-~d~d---l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~ 628 (859)
.+|+.. .++...++..++... ... ..++ +..|....---..++|.++++.|...+ ....|+.+|+..
T Consensus 303 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~ 379 (463)
T TIGR01818 303 HLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPA 379 (463)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchH
Confidence 666554 344555665554322 111 1222 333444322224588888888877544 334688888765
Q ss_pred HH
Q 003000 629 AA 630 (859)
Q Consensus 629 Al 630 (859)
.+
T Consensus 380 ~~ 381 (463)
T TIGR01818 380 EL 381 (463)
T ss_pred HH
Confidence 54
No 272
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.83 E-value=1.7e-05 Score=87.67 Aligned_cols=69 Identities=26% Similarity=0.420 Sum_probs=47.8
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcc-cchhhhhHHHHHHhcCCcEEEhhhhHh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDA 496 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~-~~~~l~~lfe~a~~~~p~Il~iDEId~ 496 (859)
..|++|+||+|||||+|+.+||.++ +..+..+++.+++...... ....+...++.+ ...++|+|||+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 4689999999999999999999987 6677777777765442211 111223344443 3456999999854
No 273
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.82 E-value=2.5e-05 Score=78.50 Aligned_cols=43 Identities=30% Similarity=0.425 Sum_probs=34.6
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 566777777776 9999999999999999999988665555443
No 274
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.82 E-value=1.6e-05 Score=80.74 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=34.7
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.++.| ++|.||||+|||||+++|+|...+..+++.
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 567777888777 999999999999999999998766555543
No 275
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.82 E-value=5.7e-06 Score=86.10 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=36.0
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 3567778888777 8999999999999999999988766665543
No 276
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.82 E-value=2e-05 Score=84.89 Aligned_cols=70 Identities=30% Similarity=0.496 Sum_probs=47.8
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccc-hhh-hhHHHHHHhcCCcEEEhhhhHhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGA-SRV-RSLYQEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~-~~l-~~lfe~a~~~~p~Il~iDEId~l 497 (859)
+.+++|+||||+|||+|+-+|+.++ |..+..++..+++...-.... ... ..+...+ ...++|+|||+-..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4579999999999999999999977 677888888887755221111 111 1122212 34579999999654
No 277
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.81 E-value=6.8e-05 Score=87.23 Aligned_cols=180 Identities=23% Similarity=0.304 Sum_probs=102.4
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----hhcccchhh-------hhHHHHHHhcCCcEEEh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFI 491 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l-------~~lfe~a~~~~p~Il~i 491 (859)
..+++.|++||||+++++++.... +.+++.++|..+... .+|.....+ ...+. ....+++||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFE---RANEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEE
Confidence 358999999999999999997643 578999999876432 222211100 01222 223568999
Q ss_pred hhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----C----CCCeEEEeccCCCC-------CCCccCCCCCccc
Q 003000 492 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNRPD-------ILDPALVRPGRFD 555 (859)
Q Consensus 492 DEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----~----~~~vlVIatTN~~~-------~LdpaLlrpgRfd 555 (859)
|||+.+... ....|+..++... . ..++.||++||..- .+.+.+.. |+.
T Consensus 244 d~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~ 307 (457)
T PRK11361 244 DEIGEMPLV--------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN 307 (457)
T ss_pred echhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc
Confidence 999998654 5666666665321 0 13578888887531 22333332 222
Q ss_pred ccccCCCCCHHHHHH----HHHHHHccC----CCC-Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 556 RKIFIPKPGLIGRME----ILKVHARKK----PMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~----Il~~~l~~~----~~~-~d~d---l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
.+.+..|...+|.+ ++..++... ... ..++ +..|..+.--...++|.++++.|...+ ....|+.
T Consensus 308 -~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~ 383 (457)
T PRK11361 308 -VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFS 383 (457)
T ss_pred -cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccH
Confidence 34555566666543 333333321 111 1122 334444443345688888888876443 3446888
Q ss_pred HHHHHH
Q 003000 624 DDLLQA 629 (859)
Q Consensus 624 edl~~A 629 (859)
+|+...
T Consensus 384 ~~l~~~ 389 (457)
T PRK11361 384 EDLPPQ 389 (457)
T ss_pred HHChHh
Confidence 777543
No 278
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.81 E-value=1.9e-05 Score=88.98 Aligned_cols=142 Identities=21% Similarity=0.296 Sum_probs=83.8
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcccc-cEEEeeccccchhhh------cccchhhhhHHHHHHhcCCcEEEhhhh
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQFVEIYV------GVGASRVRSLYQEAKDNAPSVVFIDEL 494 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-~~~~is~s~~~~~~~------g~~~~~l~~lfe~a~~~~p~Il~iDEI 494 (859)
....|+|+.|+||.|+|||.|+-+....+.. .-.++...+|+.... ......+..+.+.... ...+|+|||+
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeee
Confidence 3456899999999999999999999888765 334455555543311 1111223333333333 3348999998
Q ss_pred HhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC-CCCCccCCCCCcccccccCCCCCHHHHHHHHH
Q 003000 495 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-DILDPALVRPGRFDRKIFIPKPGLIGRMEILK 573 (859)
Q Consensus 495 d~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~-~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~ 573 (859)
.---.. .-.++..|+..+- ..++++|+|+|.+ +.|-+ +.+.+.... --..+++
T Consensus 137 ~V~Dia-----------DAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~-----~gl~r~~Fl------p~I~~l~ 190 (362)
T PF03969_consen 137 QVTDIA-----------DAMILKRLFEALF----KRGVVLVATSNRPPEDLYK-----NGLQRERFL------PFIDLLK 190 (362)
T ss_pred eccchh-----------HHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC-----CcccHHHHH------HHHHHHH
Confidence 543111 0115555665443 4688999999974 33322 233222222 1356777
Q ss_pred HHHccCCCCCcccHHHH
Q 003000 574 VHARKKPMADDVDYLAV 590 (859)
Q Consensus 574 ~~l~~~~~~~d~dl~~l 590 (859)
.++.-..++...|+...
T Consensus 191 ~~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 191 RRCDVVELDGGVDYRRR 207 (362)
T ss_pred hceEEEEecCCCchhhh
Confidence 77777777777777653
No 279
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=6.8e-06 Score=87.23 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=36.0
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.+.++.++.| ++|+||||+|||||++.++|-+.+..+.+..
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~ 63 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEE
Confidence 3456677777766 9999999999999999999999877766643
No 280
>PF05729 NACHT: NACHT domain
Probab=97.80 E-value=8.8e-05 Score=73.07 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=71.1
Q ss_pred EEEECCCCCCchhHHHhhhhccc---------ccEEEeeccccchh--------h----hcccchhhhhHH-HHHHhcCC
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEI--------Y----VGVGASRVRSLY-QEAKDNAP 486 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~---------~~~~~is~s~~~~~--------~----~g~~~~~l~~lf-e~a~~~~p 486 (859)
++|+|++|+|||++++.++..+. ...+.+.+...... + .......+...+ ........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999987551 11223333332211 0 001111111112 22334456
Q ss_pred cEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCC--CCCCCccCCCCCcccccccCCCCC
Q 003000 487 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR--PDILDPALVRPGRFDRKIFIPKPG 564 (859)
Q Consensus 487 ~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~--~~~LdpaLlrpgRfd~~I~~~~Pd 564 (859)
.+++||.+|.+...... ++.......+..++ .. ....++-+|.|+.. ...+...+.. ...+.+++.+
T Consensus 83 ~llilDglDE~~~~~~~---~~~~~~~~~l~~l~---~~-~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQS---QERQRLLDLLSQLL---PQ-ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred eEEEEechHhcccchhh---hHHHHHHHHHHHHh---hh-ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 68899999998653211 01111122233333 22 11233334433332 2222222222 1468889999
Q ss_pred HHHHHHHHHHHHcc
Q 003000 565 LIGRMEILKVHARK 578 (859)
Q Consensus 565 ~~eR~~Il~~~l~~ 578 (859)
.++..++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999888753
No 281
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.79 E-value=3.2e-05 Score=78.12 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=34.5
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.++.| ++|+||||+|||||+++|+|...+..+.+.
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 566777777777 899999999999999999998866555543
No 282
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.79 E-value=3.4e-05 Score=78.00 Aligned_cols=57 Identities=32% Similarity=0.486 Sum_probs=45.5
Q ss_pred HHHHHHhccc-chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 405 LEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 405 l~~~v~~~~~-~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
++++.+.|.+ +..+.++++.+++| ++|+||+|+|||||+|.|.++..+.-+.+....
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~ 63 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63 (223)
T ss_pred ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECC
Confidence 4566666654 44788899999998 889999999999999999998877766665443
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.79 E-value=7.3e-05 Score=73.10 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=45.1
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhh-------------------hccc-chhh----hhHHHHH
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY-------------------VGVG-ASRV----RSLYQEA 481 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~-------------------~g~~-~~~l----~~lfe~a 481 (859)
++|+||||+|||+++..+++.+ +.+.+.++........ .... .... ......+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 5899999999999999999876 4555565554332110 0000 0000 1123444
Q ss_pred HhcCCcEEEhhhhHhhhhc
Q 003000 482 KDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 482 ~~~~p~Il~iDEId~l~~~ 500 (859)
....|.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5667889999999988643
No 284
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.79 E-value=8.2e-06 Score=85.19 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 401 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 401 ~v~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
.+++++++.+.|++...+.++++.+++| +.+.||+|+|||||+|.|.+.+.+..+.|
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 3456677788889999999999999998 88999999999999999999887665554
No 285
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.78 E-value=3.7e-05 Score=82.95 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=36.9
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 71 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 34567778888777 9999999999999999999988776666643
No 286
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.78 E-value=2.1e-05 Score=86.52 Aligned_cols=55 Identities=25% Similarity=0.265 Sum_probs=44.8
Q ss_pred HHHHHhcc-cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 406 EEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 406 ~~~v~~~~-~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.++.+.|+ ....+.++++.++.| +.|.||||+|||||+|+|+|...+..+++...
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~ 65 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVL 65 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEc
Confidence 34445566 466778889999888 99999999999999999999998887776544
No 287
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=2.2e-05 Score=85.13 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 405 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 405 l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
..++...|.+...+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+.
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 82 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL 82 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 356666777777788888888887 999999999999999999998876666554
No 288
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=2e-05 Score=81.97 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=36.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4567777777777 8999999999999999999988776666654
No 289
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.77 E-value=3.7e-05 Score=93.53 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=86.6
Q ss_pred HHHHHHHhccc--chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccchh------------hh
Q 003000 404 ELEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------------YV 467 (859)
Q Consensus 404 ~l~~~v~~~~~--~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~------------~~ 467 (859)
.++++...|.. +....++++.++.| +.|+|++|||||||+|.|.|-..+..|.|..+..--. |+
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence 34455555543 35778899999999 9999999999999999999999888777765543211 22
Q ss_pred cccchhh-hhHHHHHHhcCCcEEEhhhhHhhhhc-------------------cCCcCCCCchhHHHHHHHHHHhhcccc
Q 003000 468 GVGASRV-RSLYQEAKDNAPSVVFIDELDAVGRE-------------------RGLIKGSGGQERDATLNQLLVCLDGFE 527 (859)
Q Consensus 468 g~~~~~l-~~lfe~a~~~~p~Il~iDEId~l~~~-------------------r~~~~~sgge~~r~~l~~LL~~ld~~~ 527 (859)
.+...-. +.+.++..-..|..- .+|+-..+.. .+...=|||++.+..+...+ .
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL------l 625 (709)
T COG2274 553 LQDPFLFSGSIRENIALGNPEAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL------L 625 (709)
T ss_pred cccchhhcCcHHHHHhcCCCCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh------c
Confidence 2221111 456666666666432 3344332211 01111299999999999888 6
Q ss_pred CCCCeEEE-eccCCCCC
Q 003000 528 GRGNVITI-ASTNRPDI 543 (859)
Q Consensus 528 ~~~~vlVI-atTN~~~~ 543 (859)
.+++++++ .+|+..|.
T Consensus 626 ~~P~ILlLDEaTSaLD~ 642 (709)
T COG2274 626 SKPKILLLDEATSALDP 642 (709)
T ss_pred cCCCEEEEeCcccccCH
Confidence 77888888 77776554
No 290
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.75 E-value=7.1e-06 Score=86.66 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=36.1
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
+...+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 58 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 334567777887776 999999999999999999998866655554
No 291
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.74 E-value=4.6e-06 Score=92.21 Aligned_cols=53 Identities=25% Similarity=0.269 Sum_probs=41.5
Q ss_pred HHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 407 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 407 ~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
++.+.|.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 12 ~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i 66 (306)
T PRK13537 12 NVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66 (306)
T ss_pred eEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3334444445677888888877 8999999999999999999998777666544
No 292
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.73 E-value=1.9e-05 Score=82.68 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=37.0
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
.+.++++.+..| +.|+|++|||||||+++|+|-..+..+.|....
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G 68 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 556777777777 999999999999999999998877777665443
No 293
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=1.8e-05 Score=89.09 Aligned_cols=44 Identities=30% Similarity=0.357 Sum_probs=36.5
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|||...+..+.|..
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~ 65 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI 65 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEE
Confidence 3466777777776 9999999999999999999998877776644
No 294
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.72 E-value=6.2e-05 Score=73.18 Aligned_cols=85 Identities=32% Similarity=0.517 Sum_probs=55.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccc---cEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 503 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~---~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~ 503 (859)
..|+|+|++||||+++|++|....+. +++.+++.... ..+++.+ .++.++|+++|.+...
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~--- 84 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE--- 84 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH---
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH---
Confidence 34899999999999999999886543 45555554322 2344443 5678999999998654
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCC
Q 003000 504 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR 540 (859)
Q Consensus 504 ~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~ 540 (859)
....|+..+.... ..++-+|+++..
T Consensus 85 -----------~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 85 -----------AQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp -----------HHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred -----------HHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 5555666565432 455666665543
No 295
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.72 E-value=2.6e-05 Score=81.54 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=36.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 62 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF 62 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 567778888777 9999999999999999999988776666544
No 296
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.72 E-value=7.9e-05 Score=87.11 Aligned_cols=180 Identities=16% Similarity=0.215 Sum_probs=103.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----hhcccchhh-------hhHHHHHHhcCCcEEEhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 492 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l-------~~lfe~a~~~~p~Il~iD 492 (859)
.++|+|++|||||++|++|.... +.+|+.++|+.+... .+|...+.. ...|+ ....+.+|||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~ 239 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLD 239 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEe
Confidence 48999999999999999998765 568999999876432 222211100 01122 2235679999
Q ss_pred hhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---------CCCCeEEEeccCCC-------CCCCccCCCCCccc-
Q 003000 493 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFD- 555 (859)
Q Consensus 493 EId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~---------~~~~vlVIatTN~~-------~~LdpaLlrpgRfd- 555 (859)
|++.+... ....|+..++... ...++-||+||+.. ..+.+.|.. ||.
T Consensus 240 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~ 303 (469)
T PRK10923 240 EIGDMPLD--------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNV 303 (469)
T ss_pred ccccCCHH--------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhcc
Confidence 99998654 5566666665321 02356788888653 134445554 552
Q ss_pred ccccCCCCCH--HHHHHHHHHHHccC----CC----CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 003000 556 RKIFIPKPGL--IGRMEILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 625 (859)
Q Consensus 556 ~~I~~~~Pd~--~eR~~Il~~~l~~~----~~----~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ed 625 (859)
..|.+|+... ++...++..++... .. ....-+..|..+.=-...++|.++++.+...+ ....|+.+|
T Consensus 304 ~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~ 380 (469)
T PRK10923 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQD 380 (469)
T ss_pred eeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHH
Confidence 3444544321 23333555554321 11 11122344444444445688888888876543 344688888
Q ss_pred HHHH
Q 003000 626 LLQA 629 (859)
Q Consensus 626 l~~A 629 (859)
+...
T Consensus 381 l~~~ 384 (469)
T PRK10923 381 LPGE 384 (469)
T ss_pred CcHh
Confidence 7543
No 297
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.72 E-value=3.2e-05 Score=80.56 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=75.7
Q ss_pred HHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc--cchh-----------hhccc
Q 003000 406 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ--FVEI-----------YVGVG 470 (859)
Q Consensus 406 ~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~--~~~~-----------~~g~~ 470 (859)
+++...|+....+..+++.++.| ++|.||||+|||||+++|+|...+..++|.+.. +... |+.++
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPeg 86 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEG 86 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccc
Confidence 44455677777778888998888 999999999999999999999988777765432 2111 34333
Q ss_pred chhhh--hHHHHHHh----c---CCcEEEhhhhHhhhhc------cCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE
Q 003000 471 ASRVR--SLYQEAKD----N---APSVVFIDELDAVGRE------RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 535 (859)
Q Consensus 471 ~~~l~--~lfe~a~~----~---~p~Il~iDEId~l~~~------r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI 535 (859)
..-+. ++-++..- . ...--.+|++..+++. +....-|||++.-..+...| ..++.++++
T Consensus 87 R~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL------m~~PklLLL 160 (237)
T COG0410 87 RRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL------MSRPKLLLL 160 (237)
T ss_pred ccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH------hcCCCEEEe
Confidence 32211 11222210 0 1111126777766553 11122388888766666655 456677776
No 298
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.72 E-value=2.8e-05 Score=94.47 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=41.8
Q ss_pred HHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 408 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 408 ~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+...|.+..++.++++.++.| +.|+||||+|||||+++|+|...+..|.|..
T Consensus 9 ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 9 AWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred EEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 333454555788888888887 9999999999999999999988777676654
No 299
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.71 E-value=2.3e-05 Score=82.25 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhccc
Q 003000 401 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 401 ~v~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~ 451 (859)
..+.++++...+.+..++.++++.+..| +.|+||||+|||||++.++++..
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 3455666666677778888999888877 99999999999999999999763
No 300
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.71 E-value=4.8e-05 Score=80.77 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=37.6
Q ss_pred hhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 418 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 418 ~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
-+++++.+|.| ++++||||.||||++|.|.|.+-+..+.+....
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 36788999998 999999999999999999999877777666544
No 301
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=1.2e-05 Score=97.71 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=41.2
Q ss_pred HhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 410 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 410 ~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..|+...++.++++.+..| ++|+||||+|||||+++|+|...+..|.|..
T Consensus 9 ~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 9 IRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred EEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 3455556788888888887 9999999999999999999988777676654
No 302
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.70 E-value=0.00015 Score=90.55 Aligned_cols=135 Identities=27% Similarity=0.359 Sum_probs=93.3
Q ss_pred cCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh--hhccc-------chhh-hhHHHHHHhcCCcEEEhhhh
Q 003000 425 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVG-------ASRV-RSLYQEAKDNAPSVVFIDEL 494 (859)
Q Consensus 425 ~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~--~~g~~-------~~~l-~~lfe~a~~~~p~Il~iDEI 494 (859)
+.++++|-|.||+|||+|+.+||+..|..+++|+.++.... .+|.. .-.+ ..-|-.+.+. ...+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehh
Confidence 44569999999999999999999999999999999875443 12211 1111 2233333333 347899999
Q ss_pred HhhhhccCCcCCCCchhHHHHHHHHHHhhcc------------ccCCCCeEEEeccCCCC------CCCccCCCCCcccc
Q 003000 495 DAVGRERGLIKGSGGQERDATLNQLLVCLDG------------FEGRGNVITIASTNRPD------ILDPALVRPGRFDR 556 (859)
Q Consensus 495 d~l~~~r~~~~~sgge~~r~~l~~LL~~ld~------------~~~~~~vlVIatTN~~~------~LdpaLlrpgRfd~ 556 (859)
.-.... ++..|-.++|. +.-.+|+.|++|-|+-+ .|+..+++ ||.
T Consensus 1621 NLaSQS--------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs- 1683 (4600)
T COG5271 1621 NLASQS--------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS- 1683 (4600)
T ss_pred hhhHHH--------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-
Confidence 654322 55555555553 22346889999988754 48899998 996
Q ss_pred cccCCCCCHHHHHHHHHHHHc
Q 003000 557 KIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 557 ~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
+|++..++.++...|......
T Consensus 1684 vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1684 VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred eEEecccccchHHHHHHhhCC
Confidence 677888888877777765543
No 303
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.70 E-value=1.3e-05 Score=83.80 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=38.7
Q ss_pred hcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 411 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 411 ~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.+...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+...
T Consensus 20 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 71 (214)
T PRK13543 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71 (214)
T ss_pred ecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEEC
Confidence 333334667778888777 99999999999999999999887666665443
No 304
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.70 E-value=5.7e-05 Score=76.83 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=27.8
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhh
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~ 448 (859)
.+.++++.++.| +.|+||||+|||||+++++.
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 467778888877 89999999999999999974
No 305
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.69 E-value=2.7e-05 Score=85.94 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=37.2
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 52 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV 52 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34567778888877 8999999999999999999988777666654
No 306
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=2.2e-05 Score=88.60 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=36.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| +.|+||||+|||||+++|||...+..+.|...
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~ 64 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIG 64 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEEC
Confidence 456677777776 89999999999999999999887777766543
No 307
>PRK06921 hypothetical protein; Provisional
Probab=97.68 E-value=3.8e-05 Score=83.24 Aligned_cols=67 Identities=28% Similarity=0.302 Sum_probs=42.9
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc----cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhH
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELD 495 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el----~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId 495 (859)
..+++|+||+|+|||+|+.+||+++ +..+++++..++....... .......++.. ...++|+|||++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~ 187 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLF 187 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEeccc
Confidence 4569999999999999999999976 4556667665543322110 01111222222 346799999994
No 308
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=2e-05 Score=79.94 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=35.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
..+.++++.+..| +.|.||||+|||||+++|+|.+.+..+.+.
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3567778888777 889999999999999999998876666554
No 309
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.68 E-value=9.6e-06 Score=89.50 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=39.2
Q ss_pred hcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 411 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 411 ~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.|.+...+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 13 ~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 63 (303)
T TIGR01288 13 SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63 (303)
T ss_pred EeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 344444677888888877 9999999999999999999988776666643
No 310
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.68 E-value=2.9e-05 Score=82.47 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=39.6
Q ss_pred hcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 411 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 411 ~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.....+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 80 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 344555778888888877 8999999999999999999988766666543
No 311
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.68 E-value=2.8e-05 Score=80.74 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=36.6
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 34567777777776 8999999999999999999988766666554
No 312
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.68 E-value=3.1e-05 Score=78.95 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=34.6
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL 59 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 456667777766 8999999999999999999988766665543
No 313
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.68 E-value=2.1e-05 Score=89.16 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=36.3
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~ 62 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 4567777888776 9999999999999999999988776666543
No 314
>PRK15115 response regulator GlrR; Provisional
Probab=97.67 E-value=0.00014 Score=84.33 Aligned_cols=179 Identities=21% Similarity=0.281 Sum_probs=102.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhh-----hcccchhh-------hhHHHHHHhcCCcEEEhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY-----VGVGASRV-------RSLYQEAKDNAPSVVFID 492 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~-----~g~~~~~l-------~~lfe~a~~~~p~Il~iD 492 (859)
.++|+|++|||||++|+++.... +.+|+.++|+.+.... +|...+.. ..+++ ....+.+|||
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ 235 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFLD 235 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEEE
Confidence 48999999999999999997654 5789999998754321 12111100 11222 2235689999
Q ss_pred hhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----C----CCCeEEEeccCCCCCCCccCCCCCcccc-------
Q 003000 493 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNRPDILDPALVRPGRFDR------- 556 (859)
Q Consensus 493 EId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----~----~~~vlVIatTN~~~~LdpaLlrpgRfd~------- 556 (859)
|++.+... ....|+..++... . ..++.+|++|+.. +.. ++..|+|..
T Consensus 236 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~l~~~l~ 298 (444)
T PRK15115 236 EIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPK-AMARGEFREDLYYRLN 298 (444)
T ss_pred ccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHH-HHHcCCccHHHHHhhc
Confidence 99998654 5566666665321 0 1257888888753 222 222344421
Q ss_pred cccCCCCCHHHHHH----HHHHHHccC----C--C--CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003000 557 KIFIPKPGLIGRME----ILKVHARKK----P--M--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624 (859)
Q Consensus 557 ~I~~~~Pd~~eR~~----Il~~~l~~~----~--~--~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~e 624 (859)
.+.+..|...+|.+ ++..++... . . ..+.-+..|..+.=.-..++|.++++.|...+ ....|+.+
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~ 375 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDA 375 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChh
Confidence 33455566666643 344444321 1 1 12222444555553446678888888776432 34468887
Q ss_pred HHHHH
Q 003000 625 DLLQA 629 (859)
Q Consensus 625 dl~~A 629 (859)
++...
T Consensus 376 ~l~~~ 380 (444)
T PRK15115 376 LVEQA 380 (444)
T ss_pred hhhhh
Confidence 77543
No 315
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=3.5e-05 Score=83.61 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=36.8
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence 34677778888877 9999999999999999999988776665543
No 316
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.65 E-value=3.9e-05 Score=82.39 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=37.9
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+...
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~ 64 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN 64 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 334567777887777 99999999999999999999887776766543
No 317
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00027 Score=77.27 Aligned_cols=128 Identities=18% Similarity=0.249 Sum_probs=82.6
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhccccc-------EEEe-ecc-----ccchh-hhc-c----cchhhhhHHHHHHh-
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-SAS-----QFVEI-YVG-V----GASRVRSLYQEAKD- 483 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~~-------~~~i-s~s-----~~~~~-~~g-~----~~~~l~~lfe~a~~- 483 (859)
+++.++||+|| +||+++|+.+|..+-.. .+.. +|. ...+. ++. . ....++.+.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56778999996 68999999999755211 1111 000 00000 110 0 11334555444432
Q ss_pred ---cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccC
Q 003000 484 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 560 (859)
Q Consensus 484 ---~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~ 560 (859)
....|++||++|.+... ..|.||..++ .+..++++|..|+.++.+-|.+++ |. ..|.|
T Consensus 100 p~~~~~kV~II~~ad~m~~~--------------AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN--------------AANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RT-QIFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cc-eeeeC
Confidence 23468999999998755 7899999999 566788999889889999999999 54 37778
Q ss_pred CCCCHHHHHHHHH
Q 003000 561 PKPGLIGRMEILK 573 (859)
Q Consensus 561 ~~Pd~~eR~~Il~ 573 (859)
++ +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 66 5555555554
No 318
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.63 E-value=3.4e-05 Score=80.65 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=35.9
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 4677778888776 9999999999999999999988666555543
No 319
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.62 E-value=0.00015 Score=84.01 Aligned_cols=183 Identities=22% Similarity=0.211 Sum_probs=101.3
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhh-----hcccchhh----hhHHHHHHhcCCcEEEhhhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY-----VGVGASRV----RSLYQEAKDNAPSVVFIDEL 494 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~-----~g~~~~~l----~~lfe~a~~~~p~Il~iDEI 494 (859)
..++++|.+|+||+++++++-... +.+|+.++|+...... +|.....+ ...........++.+|||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei 242 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEecc
Confidence 448999999999999999996543 5789999998754332 22111110 00000012234678999999
Q ss_pred HhhhhccCCcCCCCchhHHHHHHHHHHhhccccC---------CCCeEEEeccCCCCCCCccCCCCCcccc-------cc
Q 003000 495 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG---------RGNVITIASTNRPDILDPALVRPGRFDR-------KI 558 (859)
Q Consensus 495 d~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~---------~~~vlVIatTN~~~~LdpaLlrpgRfd~-------~I 558 (859)
+.+... ....|+..++...- ..++.+|++|+..-. ....+|+|.. .+
T Consensus 243 ~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l~~~l~~~ 305 (441)
T PRK10365 243 GDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---AEVNAGRFRQDLYYRLNVV 305 (441)
T ss_pred ccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccc
Confidence 998654 55666666653210 124667877755321 1223344432 34
Q ss_pred cCCCCCHHHHHH----HHHHHHccC----CC----CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003000 559 FIPKPGLIGRME----ILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 626 (859)
Q Consensus 559 ~~~~Pd~~eR~~----Il~~~l~~~----~~----~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl 626 (859)
.+..|...+|.+ ++..++... .. .....+..|....-.-..++|.++++.|... .....|+.+++
T Consensus 306 ~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~l 382 (441)
T PRK10365 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---LTGEYISEREL 382 (441)
T ss_pred eecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---CCCCccchHhC
Confidence 455555555543 444444331 11 1122233444444233567777777776643 23446888877
Q ss_pred HHH
Q 003000 627 LQA 629 (859)
Q Consensus 627 ~~A 629 (859)
...
T Consensus 383 ~~~ 385 (441)
T PRK10365 383 PLA 385 (441)
T ss_pred chh
Confidence 543
No 320
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.00013 Score=78.16 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=79.1
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccc------cc-----hhhh--c----ccchhhhhHHHHHHh---
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ------FV-----EIYV--G----VGASRVRSLYQEAKD--- 483 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~------~~-----~~~~--g----~~~~~l~~lfe~a~~--- 483 (859)
..|..+||+||.|+||..+|.++|..+-..-..-.|+. +. +.++ . -....++.+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 45667999999999999999999875521110001111 00 0000 0 011223444433321
Q ss_pred --cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCC
Q 003000 484 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 561 (859)
Q Consensus 484 --~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~ 561 (859)
....|++|+++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhhCHH--------------HHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 23568999999988655 7899999999 577899999999999999999999 653 45566
Q ss_pred CC
Q 003000 562 KP 563 (859)
Q Consensus 562 ~P 563 (859)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 65
No 321
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.62 E-value=0.0007 Score=77.97 Aligned_cols=170 Identities=14% Similarity=0.172 Sum_probs=86.4
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeeccc-------c------chhhhcccchhhhhHHHHHH------------h
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ-------F------VEIYVGVGASRVRSLYQEAK------------D 483 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~-------~------~~~~~g~~~~~l~~lfe~a~------------~ 483 (859)
+||+||+||||||.++.|+.++|..+....-.- + ...++......+..+...+. .
T Consensus 113 LLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~ 192 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLR 192 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccc
Confidence 899999999999999999999998887654111 0 11011111111112222221 1
Q ss_pred cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCC------CCccccc
Q 003000 484 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVR------PGRFDRK 557 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlr------pgRfd~~ 557 (859)
..+.+|++||+-..... . ....+..+|..+-......-|++|.-++..+..++..+. ..|++ .
T Consensus 193 ~~~~liLveDLPn~~~~------d----~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~ 261 (634)
T KOG1970|consen 193 TDKKLILVEDLPNQFYR------D----DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-N 261 (634)
T ss_pred cCceEEEeeccchhhhh------h----hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-e
Confidence 23558999998554321 0 112333333333222222322233222333333322221 12333 5
Q ss_pred ccCCCCCHHHHHHHHHHHHccC-------CCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003000 558 IFIPKPGLIGRMEILKVHARKK-------PMADDVDYLAVASMTDGMVGAELANIVEVAAINM 613 (859)
Q Consensus 558 I~~~~Pd~~eR~~Il~~~l~~~-------~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A 613 (859)
|.|.+=...-..+.|+..+... .+.....+..++... ++||+.+++.-.+.+
T Consensus 262 IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 262 ISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred EeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 7777766666666666555432 112234445555544 558988888777665
No 322
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.61 E-value=3.4e-05 Score=87.00 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=37.6
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.+...+.++++.++.| +.|+||||+|||||+++|||...+..+.+..
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (353)
T TIGR03265 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ 63 (353)
T ss_pred eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEE
Confidence 33333456677777766 9999999999999999999988777776654
No 323
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.61 E-value=6.1e-05 Score=75.67 Aligned_cols=41 Identities=29% Similarity=0.465 Sum_probs=33.6
Q ss_pred ccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 420 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 420 ~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+++.++.| +.|.||+|+|||||+..|||..-+..+.+...
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~ 59 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEc
Confidence 455666766 99999999999999999999987777766543
No 324
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.61 E-value=2.7e-05 Score=75.00 Aligned_cols=41 Identities=34% Similarity=0.433 Sum_probs=32.8
Q ss_pred ccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 420 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 420 ~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
++++.++.| ++|+||||+|||||+++|++...+..+.+...
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~ 45 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILIN 45 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEET
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccc
Confidence 345555555 99999999999999999999988777776443
No 325
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.60 E-value=6.7e-05 Score=77.35 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=35.7
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcc--cccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el--~~~~~~is~ 459 (859)
..+.++++.+..| ++|.||||+|||||+++|+|.. .+.-+.+..
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~ 70 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI 70 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 3567777777776 9999999999999999999988 766665543
No 326
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.59 E-value=3.5e-05 Score=79.35 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=31.9
Q ss_pred cCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 421 RGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 421 ~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 66777666 9999999999999999999988666655543
No 327
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.0011 Score=70.30 Aligned_cols=181 Identities=19% Similarity=0.251 Sum_probs=108.6
Q ss_pred EEEECCCCCCchhHHHhhhhcccc---cEEEeecccc-----chhhhcc--c--chhh--------hhHHHHHHh-cCCc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQF-----VEIYVGV--G--ASRV--------RSLYQEAKD-NAPS 487 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~---~~~~is~s~~-----~~~~~g~--~--~~~l--------~~lfe~a~~-~~p~ 487 (859)
+.++|+-|+|||++.|++...+.- ..+.++-..+ ....+.. . ...+ +.+.+.... ..|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 789999999999999977765532 2223332221 1111111 1 1112 222233333 3457
Q ss_pred EEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCc--------cCCCCCccccccc
Q 003000 488 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP--------ALVRPGRFDRKIF 559 (859)
Q Consensus 488 Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldp--------aLlrpgRfd~~I~ 559 (859)
++++||.+.+..+- -..+..|...-++....-.++.++=. . |.+ ++-. |++..|.
T Consensus 134 ~l~vdEah~L~~~~-----------le~Lrll~nl~~~~~~~l~ivL~Gqp---~-L~~~lr~~~l~e~~~--R~~ir~~ 196 (269)
T COG3267 134 VLMVDEAHDLNDSA-----------LEALRLLTNLEEDSSKLLSIVLIGQP---K-LRPRLRLPVLRELEQ--RIDIRIE 196 (269)
T ss_pred EEeehhHhhhChhH-----------HHHHHHHHhhcccccCceeeeecCCc---c-cchhhchHHHHhhhh--eEEEEEe
Confidence 89999999886541 11222222222222222335555432 1 222 2223 7777789
Q ss_pred CCCCCHHHHHHHHHHHHccCC----CCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003000 560 IPKPGLIGRMEILKVHARKKP----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 627 (859)
Q Consensus 560 ~~~Pd~~eR~~Il~~~l~~~~----~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~ 627 (859)
+++.+.++-...++.+++.-. +..+--+..+...+.| .++-|.+++..|...|...+...|+...+.
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 999999988888888886543 3334446667777777 677899999999999999898888877654
No 328
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.58 E-value=0.00015 Score=75.16 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=24.7
Q ss_pred hccCCccCceEEEECCCCCCchhHHHhhhhcc
Q 003000 419 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 419 ~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el 450 (859)
.++.+....-++|+||||+|||||+|.|++..
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34444444458999999999999999998743
No 329
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.58 E-value=0.00014 Score=75.22 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=35.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL 58 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4567777887777 999999999999999999998866655554
No 330
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=1.4e-05 Score=90.72 Aligned_cols=44 Identities=25% Similarity=0.260 Sum_probs=35.5
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|.||||+|||||+++|||...+.-+.+..
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i 78 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 3456677777766 8999999999999999999988776666543
No 331
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.57 E-value=5e-05 Score=78.82 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=36.8
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.++.| ++|.||||+|||||+++|+|.+.+..+.+..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 34567778888877 9999999999999999999988776665543
No 332
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.56 E-value=4.4e-05 Score=86.73 Aligned_cols=43 Identities=28% Similarity=0.386 Sum_probs=35.3
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| ++|+||||||||||+++|||...+..+.|..
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~ 73 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 456677777766 9999999999999999999988777666643
No 333
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.56 E-value=1.7e-05 Score=89.06 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=44.8
Q ss_pred HHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 403 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 403 ~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+.++++.+.|.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i 100 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEE
Confidence 44455555565555778888888887 9999999999999999999998777776653
No 334
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.55 E-value=4.2e-05 Score=86.52 Aligned_cols=44 Identities=30% Similarity=0.372 Sum_probs=36.2
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccE--EEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNF--FSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~--~~is~ 459 (859)
..+.++++.+..| +.|+||||+|||||+++|||...+.. +.+..
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~ 66 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI 66 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEE
Confidence 3566777887776 99999999999999999999887766 76644
No 335
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.55 E-value=5.8e-05 Score=77.86 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=36.1
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+.
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR 58 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 334567777777777 999999999999999999998866655554
No 336
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.53 E-value=0.0001 Score=88.63 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=38.6
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.+++| ++|+||+|+|||||++.|+|...+..|.+..+
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 4678888888887 99999999999999999999988877766543
No 337
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.53 E-value=5.7e-05 Score=83.36 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=38.9
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.+...+.++++.++.| +.|.||||+|||||+++|+|...+..+++..
T Consensus 12 ~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i 61 (301)
T TIGR03522 12 YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61 (301)
T ss_pred ECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33444677788888877 9999999999999999999988777776643
No 338
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=2.2e-05 Score=88.27 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=37.0
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~ 64 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 3567788888887 8999999999999999999998776666544
No 339
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.52 E-value=0.00011 Score=90.27 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=42.5
Q ss_pred HHHHHHhcc--cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 405 LEEIVKFFT--HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 405 l~~~v~~~~--~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
++++...|. +...++++++.+++| ++|+||+|+|||||++.|+|...+..|.|..
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 344444442 234678888998887 9999999999999999999998777666543
No 340
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.52 E-value=3.3e-05 Score=92.33 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHhcc-cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 407 EIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 407 ~~v~~~~-~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
++...|. +...+.++++.++.| ++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 11 ~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~ 66 (556)
T PRK11819 11 RVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP 66 (556)
T ss_pred eEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 3333444 345678888888887 9999999999999999999998766666543
No 341
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.52 E-value=0.00012 Score=87.09 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=38.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.++++++.+++| ++|+||+|+|||||++.|+|...+..|.+...
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 678888998888 99999999999999999999988777666443
No 342
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.51 E-value=0.00064 Score=88.15 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=95.5
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccE---EEeecc---ccc
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF---FSISAS---QFV 463 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~---~~is~s---~~~ 463 (859)
..+++..|.+..+..+..+.. ++....+-+.|+|++|+||||||+++++.+...| +.++.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLH----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred cccccccchHHHHHHHHHHHc----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 356677788877766655442 1122233489999999999999999988764332 111110 000
Q ss_pred hhhh----------------------cccchhhh--hHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHH
Q 003000 464 EIYV----------------------GVGASRVR--SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 519 (859)
Q Consensus 464 ~~~~----------------------g~~~~~l~--~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~L 519 (859)
..+. +.....+. ..........+.++++|+++... .+..+
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~----------------~l~~L 314 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQD----------------VLDAL 314 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHH----------------HHHHH
Confidence 0000 00000000 11122223445678889875431 34444
Q ss_pred HHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc--cc-HHHHHhhCCC
Q 003000 520 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD--VD-YLAVASMTDG 596 (859)
Q Consensus 520 L~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d--~d-l~~lA~~t~G 596 (859)
....+.+ ..+..||.||...+. ++....++++.++.|+.++..++|..++.......+ .+ ...++..+.|
T Consensus 315 ~~~~~~~--~~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 315 AGQTQWF--GSGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGN 387 (1153)
T ss_pred HhhCccC--CCCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCC
Confidence 3333322 233445556664332 322346778999999999999999988754432221 11 2346677777
Q ss_pred CCHH
Q 003000 597 MVGA 600 (859)
Q Consensus 597 ~sga 600 (859)
..-+
T Consensus 388 LPLA 391 (1153)
T PLN03210 388 LPLG 391 (1153)
T ss_pred CcHH
Confidence 6643
No 343
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.51 E-value=8.9e-05 Score=69.02 Aligned_cols=62 Identities=27% Similarity=0.464 Sum_probs=36.1
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhh
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 498 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~ 498 (859)
|.|+||||+|||+|++.|+..+...+....... .|.... -...|+... ..+ ++++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~---vy~~~~---~~~~w~gY~-~q~-vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDS---VYTRNP---GDKFWDGYQ-GQP-VVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCc---EEeCCC---ccchhhccC-CCc-EEEEeecCccc
Confidence 579999999999999999987754332111111 111000 022343333 334 78899986653
No 344
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=5.7e-05 Score=86.42 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=43.8
Q ss_pred HHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 404 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 404 ~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...++...+.....+.++++.++.| ++|+||||+|||||+++|++.+.+..+.|..
T Consensus 30 ~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i 87 (400)
T PRK10070 30 SKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI 87 (400)
T ss_pred cHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEE
Confidence 3445666665555678888888887 9999999999999999999988776665543
No 345
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=7.3e-05 Score=77.58 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=35.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhccc---ccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG---VNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~---~~~~~is~ 459 (859)
..+.++++.++.| ++|+||||+|||||++.|+|... +..+.+..
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i 69 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE
Confidence 3566777777776 99999999999999999999876 55565543
No 346
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.49 E-value=0.00011 Score=77.27 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=35.1
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
..+..+++.+..| +.|+||+|||||||+..|++-..+..+.+
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v 62 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 3566778888888 99999999999999999999876666554
No 347
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=5.6e-05 Score=82.57 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhccccc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
.+.++++.++.| +.|+||||+|||||+++|+|.+.+.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 567778888877 9999999999999999999987654
No 348
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=9.2e-05 Score=78.38 Aligned_cols=45 Identities=29% Similarity=0.279 Sum_probs=36.9
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~ 59 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 34677788887776 9999999999999999999998766665543
No 349
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00025 Score=74.78 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=35.7
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.++.| ++|.||||+|||||+++|+|.+.+..+.+..
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 567778888877 8999999999999999999988666565543
No 350
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.47 E-value=0.00012 Score=88.28 Aligned_cols=44 Identities=32% Similarity=0.416 Sum_probs=37.1
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.+++| ++|+||+|+|||||++.|++.. +.-|.|..+
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~ 409 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKIN 409 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEEC
Confidence 4577888888887 9999999999999999999998 666666443
No 351
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.47 E-value=0.00027 Score=74.97 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=50.5
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR 499 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~ 499 (859)
..|..++||+|||||..+|.+|..+|.+++.++|++.++. ..+..+|.-+... .+.+.+||++.+-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLSE 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSSH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-CchhhhhhhhhhhH
Confidence 3466899999999999999999999999999999885543 3455666665554 56899999988743
No 352
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.46 E-value=0.00032 Score=72.79 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=59.1
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcc-------------------c----chhhhhHHHHHH
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-------------------G----ASRVRSLYQEAK 482 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~-------------------~----~~~l~~lfe~a~ 482 (859)
++|+||||+|||+|+..++... +...++++..++....+.+ . ...+..+.+.+.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 94 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFID 94 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998887533 5567777765421110000 0 001222333344
Q ss_pred hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccC
Q 003000 483 DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 539 (859)
Q Consensus 483 ~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN 539 (859)
...+++++||-+..+..... .+.. ......+..++..|..+....++.+|.+..
T Consensus 95 ~~~~~lvVIDSis~l~~~~~--~~~~-~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 95 RDSASLVVVDSFTALYRLEL--SDDR-ISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred hcCccEEEEeCcHHHhHHHh--CCcc-HHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 45789999999998753211 1111 112223334444444444456667776643
No 353
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.45 E-value=2.4e-05 Score=81.81 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=37.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 4677788888877 9999999999999999999998777776654
No 354
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.45 E-value=0.00013 Score=75.64 Aligned_cols=43 Identities=35% Similarity=0.476 Sum_probs=34.1
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcc--cccEEEee
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSIS 458 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el--~~~~~~is 458 (859)
..+.++++.+..| ++|+||||+|||||+++|+|.. .+..+.+.
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~ 60 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL 60 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE
Confidence 4567777877776 9999999999999999999984 44455443
No 355
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.45 E-value=0.0025 Score=72.58 Aligned_cols=224 Identities=19% Similarity=0.228 Sum_probs=124.1
Q ss_pred ccCchHHHHHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccch
Q 003000 395 VAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGAS 472 (859)
Q Consensus 395 ~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~ 472 (859)
+-|..+++..+.-+.. +.......-|.++.+. |+|.|.||+.||-|++.|.+-.....++.--+ +..+|-+..
T Consensus 344 IyGheDVKKaLLLlLV--Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAA 418 (721)
T KOG0482|consen 344 IYGHEDVKKALLLLLV--GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAA 418 (721)
T ss_pred hccchHHHHHHHHHhh--CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchh
Confidence 4466666655543332 3333333346666654 99999999999999999987654333322111 111222222
Q ss_pred hhhh-HHHHH-------HhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhh----c--cc--cCCCCeEEEe
Q 003000 473 RVRS-LYQEA-------KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL----D--GF--EGRGNVITIA 536 (859)
Q Consensus 473 ~l~~-lfe~a-------~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~l----d--~~--~~~~~vlVIa 536 (859)
-++. +...+ --...+|..|||+|++... .|..+...+.+- . ++ .-+..+-|++
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-----------DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILa 487 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-----------DRTAIHEVMEQQTISIAKAGINTTLNARTSILA 487 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-----------hhHHHHHHHHhhhhhhhhhccccchhhhHHhhh
Confidence 1111 00000 0122458899999998543 122333333210 0 11 1134577888
Q ss_pred ccCCCC-------------CCCccCCCCCcccccccC-CCCCHHHHHHHHHH----HHccCCCCC---cccHH-------
Q 003000 537 STNRPD-------------ILDPALVRPGRFDRKIFI-PKPGLIGRMEILKV----HARKKPMAD---DVDYL------- 588 (859)
Q Consensus 537 tTN~~~-------------~LdpaLlrpgRfd~~I~~-~~Pd~~eR~~Il~~----~l~~~~~~~---d~dl~------- 588 (859)
+.|+.. .|+.+|++ |||...-+ ..|+.+.-..+.++ |.....-.. .++..
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~ 565 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS 565 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH
Confidence 888753 37899999 99976544 35665544444432 222111110 01111
Q ss_pred ---------------HHH------------hhCC-CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 589 ---------------AVA------------SMTD-GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 589 ---------------~lA------------~~t~-G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
.++ .... -.|++.|-.+++.+...|..+-.+.+..+|+.+|+..+...
T Consensus 566 ~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 566 LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 110 0011 23688888899888888888888889999999999987664
No 356
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00016 Score=73.74 Aligned_cols=42 Identities=24% Similarity=0.193 Sum_probs=33.3
Q ss_pred hhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 418 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 418 ~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..++++....| +.|.||||+||||++|.||..+.+..+.+..
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~i 61 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEE
Confidence 34556666666 8999999999999999999998777665543
No 357
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.45 E-value=0.00017 Score=88.78 Aligned_cols=56 Identities=25% Similarity=0.245 Sum_probs=43.1
Q ss_pred HHHHHHhccc--chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 405 LEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 405 l~~~v~~~~~--~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
++++...|.. ...++++++.+++| +.|+||+|+|||||++.|+|...+.-|.+...
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3444444432 34678889999887 99999999999999999999988776666443
No 358
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.44 E-value=0.00021 Score=77.62 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=77.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhc--ccccE---EEeeccccchh---------hhccc---------chhhhhHHHHHHh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGE--AGVNF---FSISASQFVEI---------YVGVG---------ASRVRSLYQEAKD 483 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~e--l~~~~---~~is~s~~~~~---------~~g~~---------~~~l~~lfe~a~~ 483 (859)
+-++|+|++|+|||+||..++.. ....| +.++.+..... .++.. .......+.....
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 99 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLK 99 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHC
T ss_pred EEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence 34999999999999999999987 33222 22332221110 11111 1111222233334
Q ss_pred cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCC
Q 003000 484 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 563 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~P 563 (859)
..+++++||+++... .+..+...+... ..+.-||.||....... .. +.-+..+.++..
T Consensus 100 ~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~~-~~---~~~~~~~~l~~L 157 (287)
T PF00931_consen 100 DKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRDRSVAG-SL---GGTDKVIELEPL 157 (287)
T ss_dssp CTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESCGGGGT-TH---HSCEEEEECSS-
T ss_pred cccceeeeeeecccc----------------cccccccccccc--ccccccccccccccccc-cc---cccccccccccc
Confidence 458899999986543 222333222211 23455666775543221 11 111467899999
Q ss_pred CHHHHHHHHHHHHccCC----CCCcccHHHHHhhCCCCC
Q 003000 564 GLIGRMEILKVHARKKP----MADDVDYLAVASMTDGMV 598 (859)
Q Consensus 564 d~~eR~~Il~~~l~~~~----~~~d~dl~~lA~~t~G~s 598 (859)
+.++-.++|........ .........++..+.|..
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998876543 111223567888887643
No 359
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00026 Score=81.53 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=73.3
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEE--Eeeccccchh----------hhcccchhh-hhHHHH
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFF--SISASQFVEI----------YVGVGASRV-RSLYQE 480 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~--~is~s~~~~~----------~~g~~~~~l-~~lfe~ 480 (859)
..++.+++.+|+| +.|+|+||+||||++|+|.+... ..+ .|++-++... |+.|...-+ ..++.+
T Consensus 366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N 444 (591)
T KOG0057|consen 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN 444 (591)
T ss_pred ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence 3778889999998 99999999999999999998775 333 3444443222 333332211 345566
Q ss_pred HHhcCCcEEEhhhhHhhhhc--------------------cCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE-eccC
Q 003000 481 AKDNAPSVVFIDELDAVGRE--------------------RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTN 539 (859)
Q Consensus 481 a~~~~p~Il~iDEId~l~~~--------------------r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN 539 (859)
.....|++ -.+|+-..+.. ++. .-|||++.+..+...+ .....++++ .+|+
T Consensus 445 I~YGn~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~------lKda~Il~~DEaTS 516 (591)
T KOG0057|consen 445 IKYGNPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAF------LKDAPILLLDEATS 516 (591)
T ss_pred hhcCCCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhccc-ccccchHHHHHHHHHH------hcCCCeEEecCccc
Confidence 65555552 23444333221 110 1199999988877666 456677777 5665
Q ss_pred CCC
Q 003000 540 RPD 542 (859)
Q Consensus 540 ~~~ 542 (859)
..|
T Consensus 517 ~LD 519 (591)
T KOG0057|consen 517 ALD 519 (591)
T ss_pred ccc
Confidence 544
No 360
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.43 E-value=6.2e-05 Score=81.88 Aligned_cols=143 Identities=24% Similarity=0.355 Sum_probs=72.7
Q ss_pred CceEEEECCCCCCchhHHHhhhhccccc---EEEeeccccchh-hh-cccchhh----hhHHHHHHhcCCcEEEhhhhHh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEI-YV-GVGASRV----RSLYQEAKDNAPSVVFIDELDA 496 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~---~~~is~s~~~~~-~~-g~~~~~l----~~lfe~a~~~~p~Il~iDEId~ 496 (859)
...++|+||+|||||.+++.....+... ...++++..... .+ ......+ +..+. .......|+|+|++.-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~g-P~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYG-PPGGKKLVLFIDDLNM 111 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEE-EESSSEEEEEEETTT-
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCC-CCCCcEEEEEecccCC
Confidence 3459999999999999998877665432 233444432211 00 0000000 00000 0112235899999976
Q ss_pred hhhccCCcCCCCchhHHHHHHHHHHhhccccCC--------CCeEEEeccCCCC---CCCccCCCCCcccccccCCCCCH
Q 003000 497 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGR--------GNVITIASTNRPD---ILDPALVRPGRFDRKIFIPKPGL 565 (859)
Q Consensus 497 l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~--------~~vlVIatTN~~~---~LdpaLlrpgRfd~~I~~~~Pd~ 565 (859)
-..+. -|.......+.+++.. .++.+. .++.+|+++|... .+++.|+| .| .++.++.|+.
T Consensus 112 p~~d~-----ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 112 PQPDK-----YGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSD 182 (272)
T ss_dssp S---T-----TS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TC
T ss_pred CCCCC-----CCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCCh
Confidence 44332 1222233344444422 122221 3578888887643 35666666 44 3788999999
Q ss_pred HHHHHHHHHHHcc
Q 003000 566 IGRMEILKVHARK 578 (859)
Q Consensus 566 ~eR~~Il~~~l~~ 578 (859)
+....|+...+..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877653
No 361
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00014 Score=83.53 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcccch--hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 402 RLELEEIVKFFTHGE--MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 402 v~~l~~~v~~~~~~~--~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
..+++++...|.+.. .+.++++.+..| +.|+|++||||||++..|++...+..+++..+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 677888888887654 788999988887 999999999999999999999988888776654
No 362
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.42 E-value=0.00028 Score=75.68 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=27.7
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+.|+||||+|||||+++|+|...+..+.+...
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~ 59 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE 59 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC
Confidence 89999999999999999999987776666543
No 363
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=8.4e-05 Score=81.11 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=36.0
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~ 66 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV 66 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 567777888777 8999999999999999999998777666543
No 364
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.42 E-value=6.8e-05 Score=85.85 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=40.0
Q ss_pred HhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 410 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 410 ~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..|.+...+.++++.+..| +.|+||||+|||||+|+|+|.+.+..+.+..
T Consensus 11 ~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l 62 (402)
T PRK09536 11 VEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62 (402)
T ss_pred EEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 3344555678888888887 8999999999999999999988776665543
No 365
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.42 E-value=0.00017 Score=85.12 Aligned_cols=117 Identities=24% Similarity=0.243 Sum_probs=66.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccc-------hhhhcccchhhhhHHHHHHhcCC
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-------EIYVGVGASRVRSLYQEAKDNAP 486 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~-------~~~~g~~~~~l~~lfe~a~~~~p 486 (859)
.+.+.+++.++.| +++.||+|||||+|.|+|||--..-.+.+.+..-. ..|+..+ .++.+.-..... +
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~G--tLre~l~YP~~~-~ 483 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQG--TLREALCYPNAA-P 483 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCc--cHHHHHhCCCCC-C
Confidence 3556667777766 99999999999999999999775555555554211 1133322 222221111100 0
Q ss_pred cEEEhhhhHhhhhcc---------CCc-----CCCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCC
Q 003000 487 SVVFIDELDAVGRER---------GLI-----KGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 542 (859)
Q Consensus 487 ~Il~iDEId~l~~~r---------~~~-----~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~ 542 (859)
. +=-+|+-..+..- ... .=|+||+.+..+..++ ...+.++|+ .||+..|
T Consensus 484 ~-~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil------L~kP~~v~LDEATsALD 547 (604)
T COG4178 484 D-FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL------LHKPKWVFLDEATSALD 547 (604)
T ss_pred C-CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH------HcCCCEEEEecchhccC
Confidence 0 0011111111110 000 0189999999999998 567788888 7776543
No 366
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0056 Score=69.10 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=27.8
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeecccc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQF 462 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~ 462 (859)
+.-++|+||+|+||||++..||..+ +..+..+++..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 3448999999999999999998755 445555655443
No 367
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.42 E-value=9.9e-05 Score=83.28 Aligned_cols=44 Identities=32% Similarity=0.470 Sum_probs=36.2
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.|..
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i 61 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3566777777776 9999999999999999999988776666544
No 368
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.0001 Score=80.19 Aligned_cols=43 Identities=26% Similarity=0.321 Sum_probs=36.2
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.|..
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 64 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 567778888777 9999999999999999999988776666643
No 369
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=5.7e-05 Score=77.67 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=29.0
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el 450 (859)
.+.++++.+..| ++|+||||+|||||+++|+|..
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566777777766 8999999999999999999854
No 370
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=9.5e-05 Score=80.68 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=35.5
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII 66 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 567777887777 9999999999999999999988766665543
No 371
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00023 Score=72.33 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=34.2
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.+..| +.+.||+|||||||++.+||...+.-+++.
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~ 63 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ 63 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEE
Confidence 556777777766 899999999999999999998866655554
No 372
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00012 Score=76.09 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=32.2
Q ss_pred ccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 420 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 420 ~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
++++.+..| +.|.||||+|||||+++|+|...+..+.+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~ 57 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI 57 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 455666666 9999999999999999999988766665543
No 373
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00011 Score=80.20 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=36.6
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 567788888877 8999999999999999999988777776654
No 374
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.39 E-value=6.5e-05 Score=89.78 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=37.8
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
....+.++++.++.| ++|+||||+|||||+++|+|...+..|.+..
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~ 64 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 334678888888887 9999999999999999999988666555543
No 375
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.38 E-value=0.0002 Score=77.53 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=36.9
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.+..| ++|+||||+|||||+++|+|.+.+.-+.+..
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 34567788888777 9999999999999999999988766665543
No 376
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=9.2e-05 Score=81.17 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=36.5
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV 65 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 567788888877 9999999999999999999988777666544
No 377
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.38 E-value=5.5e-05 Score=78.84 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=39.0
Q ss_pred hcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 411 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 411 ~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.|.+...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 8 ~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 58 (213)
T cd03235 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred EECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 343344677788888877 9999999999999999999988776666654
No 378
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00011 Score=79.69 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=35.5
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| ++|.||||+|||||+++|+|.+.+.-+.+..
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 68 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFY 68 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 567777777777 8999999999999999999988766665544
No 379
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.37 E-value=0.00012 Score=77.27 Aligned_cols=57 Identities=21% Similarity=0.185 Sum_probs=47.9
Q ss_pred HHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 403 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 403 ~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+.+..+...|.....+.++++.+..| +.|.||||+|||||+++|+|...+..+.+..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 81 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 55666777787777889999988887 9999999999999999999988777776654
No 380
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.36 E-value=0.00022 Score=85.54 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=37.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.+++| ++|+|++|+|||||+++|+|...+..|.+...
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 567788888777 99999999999999999999987776666543
No 381
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.36 E-value=4.8e-05 Score=78.80 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=38.6
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+...
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 58 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 33334567778887776 99999999999999999999887766766543
No 382
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00012 Score=79.36 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=34.9
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.+..| ++|+||||+|||||+++|+|...+..+.+.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 67 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 567777887776 899999999999999999998876656554
No 383
>PRK13409 putative ATPase RIL; Provisional
Probab=97.36 E-value=0.00025 Score=85.30 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=64.0
Q ss_pred hhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhh--hhHHHHHHhc--CCc-EEE
Q 003000 418 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRV--RSLYQEAKDN--APS-VVF 490 (859)
Q Consensus 418 ~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l--~~lfe~a~~~--~p~-Il~ 490 (859)
+..+++.+..| +.|+||||+|||||+++|+|.+.+..+.+... ..-.|+.+..... ..+.+.+... ... -..
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~ 433 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYY 433 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHH
Confidence 45566666766 99999999999999999999987766666442 1111222211100 1122221110 000 001
Q ss_pred hhhh-Hhhh----hccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCC
Q 003000 491 IDEL-DAVG----RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRP 541 (859)
Q Consensus 491 iDEI-d~l~----~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~ 541 (859)
.+++ +.++ ..+....-|||+..+..+...| ....+++++ .+|+..
T Consensus 434 ~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL------~~~p~llLLDEPt~~L 484 (590)
T PRK13409 434 KSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACL------SRDADLYLLDEPSAHL 484 (590)
T ss_pred HHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHH------hcCCCEEEEeCCccCC
Confidence 1111 1110 1122223399999999998887 456777777 677653
No 384
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=9.3e-05 Score=80.54 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=35.2
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.+.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 60 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 567778888777 999999999999999999998876656553
No 385
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.35 E-value=4.1e-05 Score=90.82 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=36.8
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcc--cccEEEee
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSIS 458 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el--~~~~~~is 458 (859)
|.....+.++++.+..| ++|+||||+|||||+++|+|.. .+..+.+.
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~ 60 (520)
T TIGR03269 10 FDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60 (520)
T ss_pred ECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEE
Confidence 43334677788888877 9999999999999999999986 45555544
No 386
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=9.9e-05 Score=81.64 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=36.2
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+.+
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 567778888777 9999999999999999999988766666544
No 387
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.33 E-value=0.00017 Score=73.80 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=45.4
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh------h----------cccchhhhhHHHHHHhcCCcEE
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY------V----------GVGASRVRSLYQEAKDNAPSVV 489 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~------~----------g~~~~~l~~lfe~a~~~~p~Il 489 (859)
...++|+||||+|||||+++|++.+......+...+..+.. . +.....+..++..+.+..|+++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 34489999999999999999999875433333222211110 0 0011223456666777889999
Q ss_pred EhhhhHh
Q 003000 490 FIDELDA 496 (859)
Q Consensus 490 ~iDEId~ 496 (859)
++.|+..
T Consensus 105 ~igEir~ 111 (186)
T cd01130 105 IVGEVRG 111 (186)
T ss_pred EEEccCc
Confidence 9999853
No 388
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=4.4e-05 Score=80.72 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=36.9
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLV 64 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4567778888877 9999999999999999999998776666654
No 389
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.33 E-value=0.00011 Score=83.24 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=37.8
Q ss_pred ccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 413 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 413 ~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.....+.++++.++.| ++|+||||+|||||+++|++...+..+.+.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~ 51 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF 51 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE
Confidence 3344567788888887 999999999999999999999877766554
No 390
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.33 E-value=0.00042 Score=75.27 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=43.7
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeecc-----------ccchh--hhccc-----------chhhhhHHHHHH
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS-----------QFVEI--YVGVG-----------ASRVRSLYQEAK 482 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s-----------~~~~~--~~g~~-----------~~~l~~lfe~a~ 482 (859)
.+++|+||||+|||||+++|++.+....+.+... ++... ++.+. ......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 4699999999999999999999886544332211 11111 11111 011123556677
Q ss_pred hcCCcEEEhhhh
Q 003000 483 DNAPSVVFIDEL 494 (859)
Q Consensus 483 ~~~p~Il~iDEI 494 (859)
...|.++++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 391
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.32 E-value=0.0002 Score=74.69 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=32.3
Q ss_pred hccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 419 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 419 ~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.++++.+..| ++|.||||+|||||+++|+|...+..+++..
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3455666655 9999999999999999999988766665543
No 392
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00013 Score=79.65 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=36.5
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i 65 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEE
Confidence 3567778888877 9999999999999999999988766665544
No 393
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.31 E-value=0.0003 Score=86.46 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=38.2
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.+++| +.|+||+|+|||||++.|+|...+..|.+...
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 3678888998887 99999999999999999999987776665443
No 394
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.31 E-value=6.9e-05 Score=79.71 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=37.1
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 34677788888877 9999999999999999999988766666543
No 395
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.001 Score=73.20 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=85.7
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhcccc-------------cEEEeeccccchhhhcccchhhhhHHHHHHh-----cC
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------NFFSISASQFVEIYVGVGASRVRSLYQEAKD-----NA 485 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~-------------~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~-----~~ 485 (859)
+++...||+|+.|.||+++++.++..+-+ .+..++... .. -....++.+.+.+.. ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-~~----i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-KD----LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-Cc----CCHHHHHHHHHHhccCCcccCC
Confidence 34556899999999999999999887511 111221000 00 011234444444422 24
Q ss_pred CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCH
Q 003000 486 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 565 (859)
Q Consensus 486 p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~ 565 (859)
..|++||+++.+... ..+.||..|+ .+..++++|..|+.++.+-|.++++| .++.|++|+.
T Consensus 91 ~KvvII~~~e~m~~~--------------a~NaLLK~LE--EPp~~t~~il~~~~~~kll~TI~SRc---~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKTSNS--------------LLNALLKTIE--EPPKDTYFLLTTKNINKVLPTIVSRC---QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEecccccCHH--------------HHHHHHHHhh--CCCCCeEEEEEeCChHhChHHHHhCe---EEEECCCCCH
Confidence 568999999877543 6789999999 46677888877778888989998844 4789999988
Q ss_pred HHHHHHHHH
Q 003000 566 IGRMEILKV 574 (859)
Q Consensus 566 ~eR~~Il~~ 574 (859)
++....+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 887766654
No 396
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.30 E-value=0.00014 Score=68.41 Aligned_cols=30 Identities=43% Similarity=0.793 Sum_probs=26.0
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
|+|.|||||||||+++.||..++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999887765443
No 397
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.30 E-value=6.2e-05 Score=79.38 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=39.0
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+.+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 67 (225)
T PRK10247 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE 67 (225)
T ss_pred eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEEC
Confidence 33344677788888877 99999999999999999999877766666543
No 398
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00031 Score=75.19 Aligned_cols=82 Identities=22% Similarity=0.154 Sum_probs=55.9
Q ss_pred hccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecccc--c--------hh-----------------hhcc
Q 003000 419 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--V--------EI-----------------YVGV 469 (859)
Q Consensus 419 ~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~--~--------~~-----------------~~g~ 469 (859)
.++++.+..| +.|+|.+||||||++|.|.+-..+..|.|..... . +. |..+
T Consensus 30 d~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhe 109 (268)
T COG4608 30 DGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHE 109 (268)
T ss_pred cceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcc
Confidence 4566777766 9999999999999999999999888877755421 0 00 1111
Q ss_pred cc--hhhhhHHHHHHhcCCcEEEhhhhHhhhhc
Q 003000 470 GA--SRVRSLYQEAKDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 470 ~~--~~l~~lfe~a~~~~p~Il~iDEId~l~~~ 500 (859)
-. ..-+-.+..+....|.+++.||.-+.+..
T Consensus 110 lSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred cCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 11 11123455666788999999999877643
No 399
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.29 E-value=0.00014 Score=81.65 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=36.5
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.++.| +.|+||||+|||||+++|++...+..+.+..
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i 64 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIV 64 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 567788888877 8999999999999999999988777676643
No 400
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.29 E-value=6.9e-05 Score=79.34 Aligned_cols=48 Identities=25% Similarity=0.191 Sum_probs=38.2
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.+...+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 33334567778888777 8999999999999999999988776666654
No 401
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.28 E-value=0.00031 Score=86.50 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=42.1
Q ss_pred HHHHHhcc-cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 406 EEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 406 ~~~v~~~~-~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+++...|. +...++++++.+++| ++|+||+|+|||||++.|+|...+.-|.|...
T Consensus 477 ~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id 534 (708)
T TIGR01193 477 NDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN 534 (708)
T ss_pred EEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence 34444443 234678888888877 99999999999999999999887776666443
No 402
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.27 E-value=4.7e-05 Score=79.79 Aligned_cols=44 Identities=30% Similarity=0.362 Sum_probs=36.5
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4567777887777 9999999999999999999988776666654
No 403
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.00015 Score=76.93 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=37.9
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34667788888877 9999999999999999999998777777654
No 404
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00036 Score=71.99 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=38.7
Q ss_pred HHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhh
Q 003000 403 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 403 ~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~ 448 (859)
..++++..+|+....++++++.+|.+ ..|.||+|||||||+|++-.
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 34456666777788888999999987 89999999999999999965
No 405
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.27 E-value=0.00037 Score=85.86 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=37.7
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..++++++.+++| ++|+||+|+|||||++.|+|...+..|.|..
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 3678888888888 9999999999999999999998777666543
No 406
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00017 Score=78.98 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=35.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.+..| +.|+||||+|||||+++|+|.+.+.-+.+.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~ 65 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII 65 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Confidence 567777888777 999999999999999999998877666553
No 407
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00048 Score=81.87 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=80.6
Q ss_pred HHHHHHHHhccc---chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc--cchh----------
Q 003000 403 LELEEIVKFFTH---GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ--FVEI---------- 465 (859)
Q Consensus 403 ~~l~~~v~~~~~---~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~--~~~~---------- 465 (859)
++.+++...|.. ...++++++.+++| ++|+||+|+||||++..|-+...+..+.|.... +.+.
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig 545 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG 545 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee
Confidence 344555555543 34788999999988 999999999999999999998888877765433 2111
Q ss_pred hhcccchhh-hhHHHHHHhcCCcEEEhhhhHhhhh--------------------ccCCcCCCCchhHHHHHHHHHHhhc
Q 003000 466 YVGVGASRV-RSLYQEAKDNAPSVVFIDELDAVGR--------------------ERGLIKGSGGQERDATLNQLLVCLD 524 (859)
Q Consensus 466 ~~g~~~~~l-~~lfe~a~~~~p~Il~iDEId~l~~--------------------~r~~~~~sgge~~r~~l~~LL~~ld 524 (859)
+++|..--+ +.+-++.....+. .--|||...+. .++ ..-|||++.|..++..|
T Consensus 546 ~V~QEPvLFs~sI~eNI~YG~~~-~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG-~qLSGGQKQRIAIARAL---- 619 (716)
T KOG0058|consen 546 LVGQEPVLFSGSIRENIAYGLDN-ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG-SQLSGGQKQRIAIARAL---- 619 (716)
T ss_pred eeeccceeecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCccccccccCCcc-ccccchHHHHHHHHHHH----
Confidence 233322111 2233333222221 12233332211 110 11299999999998887
Q ss_pred cccCCCCeEEE-eccCCCCC
Q 003000 525 GFEGRGNVITI-ASTNRPDI 543 (859)
Q Consensus 525 ~~~~~~~vlVI-atTN~~~~ 543 (859)
..++.|+|+ .+|.-.|.
T Consensus 620 --lr~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 620 --LRNPRVLILDEATSALDA 637 (716)
T ss_pred --hcCCCEEEEechhhhcch
Confidence 567888888 67765553
No 408
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00023 Score=83.83 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=38.7
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 57 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence 33444677888888877 8999999999999999999988776666643
No 409
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.26 E-value=0.00016 Score=73.97 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=36.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 51 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI 51 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 3567777888777 9999999999999999999988776666644
No 410
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=4.6e-05 Score=79.93 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=36.7
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 63 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV 63 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4567778888777 8999999999999999999988776666654
No 411
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.25 E-value=7e-05 Score=78.10 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=36.6
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|.+.+..+++..
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 61 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 3567777888777 9999999999999999999988776666654
No 412
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00038 Score=70.93 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=48.9
Q ss_pred HHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 404 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 404 ~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.++++.+.|.......+.++.+|.| -.|.||||.|||||+..++.-++...+.+...
T Consensus 3 ~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~ 61 (252)
T COG4604 3 TIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61 (252)
T ss_pred eehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEe
Confidence 4567888898888899999999987 88999999999999999999888777766544
No 413
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.25 E-value=0.00051 Score=75.74 Aligned_cols=136 Identities=24% Similarity=0.329 Sum_probs=81.6
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcccccE-EEeeccccchh-------hhcccchhhhhHHHHHHhcCCcEEEhhhh
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-FSISASQFVEI-------YVGVGASRVRSLYQEAKDNAPSVVFIDEL 494 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~~~-~~is~s~~~~~-------~~g~~~~~l~~lfe~a~~~~p~Il~iDEI 494 (859)
-..++|+.|+|+-|+|||.|.-..-..+...- .++....|+.. ..|+. .-+..+-... .....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~-~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADEL-AAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHH-HhcCCEEEeeee
Confidence 34678999999999999999999988876543 44544444432 12222 1111222222 233469999998
Q ss_pred Hh--hhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCC-CCCCCccCCCCCcccccccCCCCCHHHHHHH
Q 003000 495 DA--VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-PDILDPALVRPGRFDRKIFIPKPGLIGRMEI 571 (859)
Q Consensus 495 d~--l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~-~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~I 571 (859)
.- ++.. .++..|+..|= ..+|++++|+|. |+.|-+.=+.+.|| +| -.++
T Consensus 140 ~VtDI~DA-------------MiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~F-----LP------~I~l 191 (367)
T COG1485 140 EVTDIADA-------------MILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERF-----LP------AIDL 191 (367)
T ss_pred eecChHHH-------------HHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhh-----HH------HHHH
Confidence 43 2221 15666665553 358899999986 34443333332333 22 2567
Q ss_pred HHHHHccCCCCCcccHH
Q 003000 572 LKVHARKKPMADDVDYL 588 (859)
Q Consensus 572 l~~~l~~~~~~~d~dl~ 588 (859)
++.++.-+.++...|+.
T Consensus 192 i~~~~~v~~vD~~~DYR 208 (367)
T COG1485 192 IKSHFEVVNVDGPVDYR 208 (367)
T ss_pred HHHheEEEEecCCcccc
Confidence 88888777777776654
No 414
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.24 E-value=0.00055 Score=82.28 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=37.8
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| ++|+||+|+|||||++.|+|...+..|.+...
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 577888888877 99999999999999999999988777766544
No 415
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.24 E-value=7.6e-05 Score=78.46 Aligned_cols=44 Identities=30% Similarity=0.299 Sum_probs=37.2
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF 64 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 3567788888877 9999999999999999999988777666654
No 416
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.23 E-value=0.00094 Score=73.26 Aligned_cols=179 Identities=20% Similarity=0.283 Sum_probs=99.7
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----hhcccc--hhhhhHHHHHHhcCCcEEEhhhhHhhh
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGA--SRVRSLYQEAKDNAPSVVFIDELDAVG 498 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~--~~l~~lfe~a~~~~p~Il~iDEId~l~ 498 (859)
+||.|.+||||-.+||+--... ..||..++|..+-+. .+|... ..-..+|+.+. .+-+|+|||-.+.
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~An---gGTVlLDeIgEmS 306 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQAN---GGTVLLDEIGEMS 306 (511)
T ss_pred eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhcc---CCeEEeehhhhcC
Confidence 7999999999999999864433 679999999987654 334333 22345787763 3468999998776
Q ss_pred hccCCcCCCCchhHHHHHHHHHHhhccc-cC--------CCCeEEEeccCCC--CCCCccCCCCCcccc--cccCCCCCH
Q 003000 499 RERGLIKGSGGQERDATLNQLLVCLDGF-EG--------RGNVITIASTNRP--DILDPALVRPGRFDR--KIFIPKPGL 565 (859)
Q Consensus 499 ~~r~~~~~sgge~~r~~l~~LL~~ld~~-~~--------~~~vlVIatTN~~--~~LdpaLlrpgRfd~--~I~~~~Pd~ 565 (859)
+. ....||..+.+- .. ..+|-||+||..+ +.....-.|..-|.+ ++.+..|..
T Consensus 307 p~--------------lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpL 372 (511)
T COG3283 307 PR--------------LQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPL 372 (511)
T ss_pred HH--------------HHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCcc
Confidence 54 667777776541 11 1358999999543 333333222222221 444555555
Q ss_pred HHHHH----HHH----HHHccCCCC-Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003000 566 IGRME----ILK----VHARKKPMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 627 (859)
Q Consensus 566 ~eR~~----Il~----~~l~~~~~~-~d~d---l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~ 627 (859)
.+|.. +.+ .+..+.... +..+ +..+..+.---..++|.|.+-+|+... ++ ..++.+++.
T Consensus 373 Rer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~--Eg-~~l~i~~i~ 443 (511)
T COG3283 373 RERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL--EG-YELRIEDIL 443 (511)
T ss_pred ccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh--cc-Cccchhhcc
Confidence 55433 222 233333222 2222 223333322224566777666665332 22 245555553
No 417
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.23 E-value=7.4e-05 Score=78.25 Aligned_cols=44 Identities=23% Similarity=0.179 Sum_probs=36.8
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4567778888777 9999999999999999999988776666654
No 418
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.00018 Score=81.24 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=32.5
Q ss_pred ccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 420 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 420 ~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~ 57 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVL 57 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 456666666 9999999999999999999988776666543
No 419
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=7.9e-05 Score=79.28 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=38.6
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.....+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (241)
T PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 (241)
T ss_pred eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 33334677788888777 9999999999999999999988776666654
No 420
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0014 Score=68.42 Aligned_cols=35 Identities=29% Similarity=0.554 Sum_probs=31.3
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el 450 (859)
.+++.+++.+..| ..|.||||+|||||+.+|+|.-
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6778888888888 8899999999999999999965
No 421
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.00025 Score=75.30 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=34.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.+..| ++|+||||+|||||+++|+|.+.+.-+.+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~ 57 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 456667777766 999999999999999999998876666543
No 422
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.22 E-value=0.0014 Score=66.42 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=24.3
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEeecc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISAS 460 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is~s 460 (859)
+++.||||||||+|+-.++... +.+..+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998776543 5566666543
No 423
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.22 E-value=0.0004 Score=71.97 Aligned_cols=67 Identities=25% Similarity=0.460 Sum_probs=41.1
Q ss_pred EEEECCCCCCchhHHHhhhhccccc----EEEeec-cccchh----h-----hcccchhhhhHHHHHHhcCCcEEEhhhh
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVN----FFSISA-SQFVEI----Y-----VGVGASRVRSLYQEAKDNAPSVVFIDEL 494 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~----~~~is~-s~~~~~----~-----~g~~~~~l~~lfe~a~~~~p~Il~iDEI 494 (859)
++|+||+|+||||+++++++.+..+ .+.+.- .++... + ++.....+...+..+....|+++++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 8999999999999999999877432 122211 111100 1 1112222344455566678999999998
Q ss_pred H
Q 003000 495 D 495 (859)
Q Consensus 495 d 495 (859)
.
T Consensus 84 r 84 (198)
T cd01131 84 R 84 (198)
T ss_pred C
Confidence 3
No 424
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.00047 Score=78.86 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=67.9
Q ss_pred HHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee--c-cccchhh---hcccchhhhhHHH
Q 003000 408 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS--A-SQFVEIY---VGVGASRVRSLYQ 479 (859)
Q Consensus 408 ~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is--~-s~~~~~~---~g~~~~~l~~lfe 479 (859)
+..+|+...++....+.+.+| ..|+|+||+|||||+|+||.. ....+.+. + +..+... .........-+.+
T Consensus 86 fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~ 164 (582)
T KOG0062|consen 86 FDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAE 164 (582)
T ss_pred eeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHHHHh
Confidence 334455666666666666655 999999999999999999981 11111110 0 0000000 0000000011111
Q ss_pred HHHhcCCcEEEhhhhHh-hhhccCCcC---------CCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCCCC
Q 003000 480 EAKDNAPSVVFIDELDA-VGRERGLIK---------GSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 543 (859)
Q Consensus 480 ~a~~~~p~Il~iDEId~-l~~~r~~~~---------~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~~~ 543 (859)
.. .. ..-+-++||.. ++..-+|.. =|||-+.+..++..| ...+.++++ .+||+.|.
T Consensus 165 e~-~l-~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAl------f~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 165 EK-EL-LAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARAL------FAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred hh-hh-hccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHH------hcCCCEEeecCCcccchh
Confidence 10 00 00113455544 433323221 189999999988877 456777887 99999875
No 425
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=7.7e-05 Score=79.18 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=36.3
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 4567778888877 9999999999999999999988766665543
No 426
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00022 Score=74.51 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=43.0
Q ss_pred HHHHHhc-ccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 406 EEIVKFF-THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 406 ~~~v~~~-~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+++.+.| .....+.++++.++.| +.|+||+|+|||||+|+|.+..++..+++-..
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~ 64 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFN 64 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEec
Confidence 3344445 4555677888999988 99999999999999999999877777666443
No 427
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.20 E-value=0.00039 Score=83.82 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=36.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
..+.++++.+++| ++|+|++|+|||||++.|+|...+.-+.+.
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 3577888888877 999999999999999999999877665543
No 428
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.20 E-value=0.00053 Score=81.54 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=37.5
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..++++++.+++| ++|+||+|+|||||++.|+|...+.-+.+..
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3578888888888 9999999999999999999988777666543
No 429
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.0002 Score=76.16 Aligned_cols=49 Identities=31% Similarity=0.399 Sum_probs=38.8
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.+...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+...
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 62 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 33334667778888777 99999999999999999999887776766543
No 430
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.00021 Score=74.95 Aligned_cols=47 Identities=26% Similarity=0.220 Sum_probs=37.7
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+...+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+...
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 60 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 334567777777776 89999999999999999999887777766543
No 431
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.20 E-value=8.4e-05 Score=78.87 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=37.7
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 60 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 334667777887776 9999999999999999999988777776654
No 432
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.20 E-value=9.4e-05 Score=79.08 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=38.3
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.+...+.++++.+..| ++|+||||+|||||+++|+|.+.+.-+.+..
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (250)
T PRK11264 13 FHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62 (250)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 33334677788888777 8999999999999999999988766666654
No 433
>PRK08118 topology modulation protein; Reviewed
Probab=97.19 E-value=0.0004 Score=70.02 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=28.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.|+++||||+|||||++.|+..++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999998877764
No 434
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.19 E-value=0.0002 Score=74.56 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=36.1
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 3566777777766 9999999999999999999988776666654
No 435
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.19 E-value=6e-05 Score=79.36 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=36.2
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcc-----cccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el-----~~~~~~is~ 459 (859)
..+.++++.+..| +.|+||||+|||||+++|+|.. .+..+.+..
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 64 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE
Confidence 4567778888777 9999999999999999999988 666666544
No 436
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.19 E-value=0.00072 Score=70.03 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=19.0
Q ss_pred eEEEECCCCCCchhHHHhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVA 447 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA 447 (859)
.++|+||||+|||||++.|+
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 39999999999999999998
No 437
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.0002 Score=78.04 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=35.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.+..| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 65 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK 65 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 567777887777 999999999999999999998876666554
No 438
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.17 E-value=0.0002 Score=75.51 Aligned_cols=45 Identities=33% Similarity=0.428 Sum_probs=37.5
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.+..| ++|+||||+|||||+++|+|.+.+..+++...
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 4567777887777 99999999999999999999987777766543
No 439
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00041 Score=80.80 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=44.8
Q ss_pred HHHHHHhcccc-hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 405 LEEIVKFFTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 405 l~~~v~~~~~~-~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
++++...+.+. ....++++.++.| +.|+|++|+|||||+..|+|.+.+..+++...+
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng 382 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNG 382 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC
Confidence 44555555443 5667888888877 999999999999999999999988777776553
No 440
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.16 E-value=0.0015 Score=74.14 Aligned_cols=72 Identities=26% Similarity=0.453 Sum_probs=49.2
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh------hhcc--------cchhhhhHHHHHHhcCCcEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------YVGV--------GASRVRSLYQEAKDNAPSVVF 490 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~------~~g~--------~~~~l~~lfe~a~~~~p~Il~ 490 (859)
-++|+|+||+|||||+..+|..+ +...++++..+-... .++. ....+..+++.+....|.+++
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVV 163 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVI 163 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEE
Confidence 38999999999999999998755 345666665432211 1111 112345566777777899999
Q ss_pred hhhhHhhhh
Q 003000 491 IDELDAVGR 499 (859)
Q Consensus 491 iDEId~l~~ 499 (859)
||.|..+..
T Consensus 164 IDSIq~l~~ 172 (372)
T cd01121 164 IDSIQTVYS 172 (372)
T ss_pred EcchHHhhc
Confidence 999988753
No 441
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.16 E-value=8.8e-05 Score=79.50 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=37.1
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYI 63 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe
Confidence 3567777888777 99999999999999999999987777766543
No 442
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00072 Score=79.94 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=35.9
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 312 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL 312 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEE
Confidence 567778888877 9999999999999999999988666665543
No 443
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0011 Score=70.75 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=82.5
Q ss_pred cCCccCc-e-EEEECCCCCCchhHHHhhhhcccccEEEeeccccc--h----hhhcccchhhhhHHHHHHhcC-------
Q 003000 421 RGVRIPG-G-ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV--E----IYVGVGASRVRSLYQEAKDNA------- 485 (859)
Q Consensus 421 ~gl~~~~-g-vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~--~----~~~g~~~~~l~~lfe~a~~~~------- 485 (859)
.++..|. | ..|.|++|+|||||+++|||-..+.-++|...... + .++.....++.++|+.++-.+
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 4455554 5 88999999999999999999998887777655432 1 244445566777888876432
Q ss_pred --CcEEE--hhhhHhhh--------hccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCc
Q 003000 486 --PSVVF--IDELDAVG--------RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGR 553 (859)
Q Consensus 486 --p~Il~--iDEId~l~--------~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgR 553 (859)
+..-+ -+++|.+. -+|....-|||++.|..+...| .....++++ |..|-+
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRAL------Lt~P~LLLm---------DEPLaS--- 158 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRAL------LTAPELLLM---------DEPLAS--- 158 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHH------hcCCCeeee---------cCchhh---
Confidence 11111 23444432 1233344599999998887766 223333332 333322
Q ss_pred ccccccCCCCCHHHHHHHHHHHHccCCC
Q 003000 554 FDRKIFIPKPGLIGRMEILKVHARKKPM 581 (859)
Q Consensus 554 fd~~I~~~~Pd~~eR~~Il~~~l~~~~~ 581 (859)
+..|...+.+-.++....+..+
T Consensus 159 ------LD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 159 ------LDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred ------cccchhhHHHHHHHHHHHhcCC
Confidence 2345566666666666655543
No 444
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.15 E-value=8.3e-05 Score=79.05 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=37.2
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcc--cccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el--~~~~~~is~ 459 (859)
|.+...+.++++.++.| ++|+||||+|||||+++|+|.. .+..+.+..
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 61 (243)
T TIGR01978 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61 (243)
T ss_pred ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEE
Confidence 33344677888888877 9999999999999999999984 455555543
No 445
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00022 Score=76.73 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=36.7
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3567778888877 9999999999999999999988776666654
No 446
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.13 E-value=9.7e-05 Score=80.11 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=38.7
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 17 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (269)
T PRK11831 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66 (269)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 33334677888888877 9999999999999999999998776666654
No 447
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0008 Score=66.55 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.7
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el 450 (859)
..++++|+||+||||++.-|+..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 358999999999999999999866
No 448
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00027 Score=75.18 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=37.7
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+...
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 34667778887777 99999999999999999999887777766543
No 449
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0012 Score=74.71 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=25.6
Q ss_pred eEEEECCCCCCchhHHHhhhhcc----c-ccEEEeeccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA----G-VNFFSISASQ 461 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el----~-~~~~~is~s~ 461 (859)
.++|+||||+||||++..||..+ + ..++.++...
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 49999999999999999999864 2 2444555444
No 450
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.11 E-value=0.00058 Score=82.00 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=36.0
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.++++++.+++| ++|+||+|+|||||++.|+|...+.-|.+..
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i 399 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 567778888777 9999999999999999999998776665543
No 451
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.11 E-value=0.00062 Score=83.70 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=42.5
Q ss_pred HHHHHHhcc--cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 405 LEEIVKFFT--HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 405 l~~~v~~~~--~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
++++...|. ....+.++++.++.| ++|+|++|+|||||++.|+|...+.-|.|...
T Consensus 458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 344444443 234678888888877 99999999999999999999987776665443
No 452
>PRK07261 topology modulation protein; Provisional
Probab=97.11 E-value=0.00061 Score=68.92 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=27.4
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
++|+|+||+|||||++.|+..++.+.+..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7999999999999999999998888776653
No 453
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.11 E-value=0.00011 Score=78.77 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=36.8
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4567777877777 9999999999999999999988777776654
No 454
>PRK10908 cell division protein FtsE; Provisional
Probab=97.10 E-value=0.00012 Score=77.02 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=36.5
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3566777777776 8999999999999999999998777776654
No 455
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.10 E-value=0.00071 Score=81.27 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=36.6
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+++| ++|+||+|+|||||++.|+|...+..+.+..
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~ 374 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF 374 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 567788888877 9999999999999999999998777666543
No 456
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.10 E-value=0.00011 Score=78.16 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=38.5
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+.+...+.++++.+..| ++|.||||+|||||+++|+|.+.+..+.+...
T Consensus 12 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 62 (242)
T TIGR03411 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62 (242)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 33334667778888777 89999999999999999999887766666543
No 457
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.10 E-value=0.0006 Score=82.21 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=36.9
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+++| ++|+|++|+|||||++.|+|...+.-|.+..
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 577888888887 9999999999999999999998877665543
No 458
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.10 E-value=0.00067 Score=70.34 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEECCCCCCchhHHHhhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~ 448 (859)
-++|+||||+|||||+++|++
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 499999999999999999994
No 459
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.09 E-value=0.00029 Score=73.39 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=36.3
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3567777777776 8999999999999999999988777676654
No 460
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.09 E-value=0.00038 Score=77.88 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=35.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+.++++.+..| +.|+|+||+|||||+++|+|.+.+..+.|.
T Consensus 36 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~ 79 (331)
T PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA 79 (331)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE
Confidence 567778888877 999999999999999999998866655554
No 461
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.09 E-value=0.0061 Score=65.95 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=46.1
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhccc------------chhhhhHHHHHHhcCCcEEEhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG------------ASRVRSLYQEAKDNAPSVVFIDE 493 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~------------~~~l~~lfe~a~~~~p~Il~iDE 493 (859)
|--+-|+|++||||++.++.||+.+-.. --.|.++..|++.. ..-...+-+.+..+.-++.++||
T Consensus 110 PLvLSfHG~tGTGKN~Va~iiA~n~~~~---Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE 186 (344)
T KOG2170|consen 110 PLVLSFHGWTGTGKNYVAEIIAENLYRG---GLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDE 186 (344)
T ss_pred CeEEEecCCCCCchhHHHHHHHHHHHhc---cccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEech
Confidence 3347899999999999999999865211 01122333322211 11113455666778888999999
Q ss_pred hHhhhhc
Q 003000 494 LDAVGRE 500 (859)
Q Consensus 494 Id~l~~~ 500 (859)
+|++.+.
T Consensus 187 ~DKmp~g 193 (344)
T KOG2170|consen 187 VDKLPPG 193 (344)
T ss_pred hhhcCHh
Confidence 9998654
No 462
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.08 E-value=0.00011 Score=78.95 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=36.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|.||||+|||||+++|+|.+.+..+.+..
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 4567777777777 9999999999999999999988776666654
No 463
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.08 E-value=0.0051 Score=70.28 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=29.7
Q ss_pred ccccccccccccCc-----ccccccccceEEEeeCCeeEEecc
Q 003000 133 KDEGKLKHVIKSPS-----GSLRQKAEPVLVVLEDSRVLRTVL 170 (859)
Q Consensus 133 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 170 (859)
-...++.|++|-|+ +.++-+|-.+.+|.-.=|-.|.++
T Consensus 132 l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~~~~ 174 (729)
T KOG0481|consen 132 LKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTRPNV 174 (729)
T ss_pred hhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccccce
Confidence 34567888888876 458999999999987777777666
No 464
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00012 Score=78.51 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=39.1
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+++...
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 65 (255)
T PRK11300 15 FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR 65 (255)
T ss_pred ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEEC
Confidence 33334667777877776 99999999999999999999987777766653
No 465
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.0003 Score=72.71 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=37.7
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~ 60 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEE
Confidence 334677788888777 9999999999999999999988776666554
No 466
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.08 E-value=0.00073 Score=81.41 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=36.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+++| ++|+||+|+|||||++.|+|...+..+.+..
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 467778888877 9999999999999999999988776665543
No 467
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00058 Score=80.03 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=35.3
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.++.| ++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I 83 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI 83 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 567778888777 8999999999999999999988666665543
No 468
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00031 Score=73.13 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=35.2
Q ss_pred hhhhccCCccCce-EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g-vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 14 ~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (211)
T cd03264 14 RALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58 (211)
T ss_pred EEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 3566666766666 8899999999999999999988776666654
No 469
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.07 E-value=0.00018 Score=75.83 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=46.4
Q ss_pred HHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 405 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 405 l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
++++.+.|.+.....++++.++.| ++|+||+||||||++|.|-+-..+..+.|-.
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i 60 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEE
Confidence 456677777888888999999988 8999999999999999999988877766543
No 470
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.0003 Score=74.97 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=36.5
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 62 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3567778888777 9999999999999999999988776666654
No 471
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.07 E-value=0.00029 Score=73.26 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=37.2
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 334567778888777 9999999999999999999988776666654
No 472
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.06 E-value=0.0003 Score=73.75 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=36.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 567777777776 9999999999999999999998777776654
No 473
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00032 Score=74.26 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=37.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| ++|+||||+|||||+++|+|.+.+..+++...
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 69 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN 69 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 567778888777 99999999999999999999887777776543
No 474
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.05 E-value=0.00099 Score=79.61 Aligned_cols=43 Identities=26% Similarity=0.236 Sum_probs=37.2
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+++| +.|+||+|+|||||++.|+|...+..|.+..
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 382 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 577888888887 9999999999999999999998777776644
No 475
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.05 E-value=0.00077 Score=80.48 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=36.8
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+++| ++|+||+|+|||||++.|+|...+..+.+..
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 377 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL 377 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 3567788888877 9999999999999999999998776665543
No 476
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.05 E-value=0.0018 Score=71.96 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=60.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-h---hc------------ccchhhhhHHHHHHhcCCcE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-Y---VG------------VGASRVRSLYQEAKDNAPSV 488 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-~---~g------------~~~~~l~~lfe~a~~~~p~I 488 (859)
-+.|+||||||||+|+-.++... +...++++..+.... | +| .....+..+...++...+++
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 38999999999999987665433 455666665432221 0 01 01111222223344567899
Q ss_pred EEhhhhHhhhhccCCcCCCC----chhHHHHHHHHHHhhccccCCCCeEEEecc
Q 003000 489 VFIDELDAVGRERGLIKGSG----GQERDATLNQLLVCLDGFEGRGNVITIAST 538 (859)
Q Consensus 489 l~iDEId~l~~~r~~~~~sg----ge~~r~~l~~LL~~ld~~~~~~~vlVIatT 538 (859)
+++|-+..+.+........+ +... ..+..+|..|.......++.+|.+.
T Consensus 137 IVIDSv~al~~~~E~e~~~g~~~~~~~a-R~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 137 IVVDSVAALVPKAEIEGEMGDSHVGLQA-RLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred EEEcchhhhccchhhcccccccchhHHH-HHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999988765322111111 1222 2344555555555556777777764
No 477
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0013 Score=74.39 Aligned_cols=36 Identities=31% Similarity=0.287 Sum_probs=27.9
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQ 461 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~ 461 (859)
|+-++|+||+|+||||++..||..+ +..++.+++..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4559999999999999999999866 34555555543
No 478
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.05 E-value=0.00035 Score=74.32 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=37.4
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
...+.++++.+..| +.|+||||+|||||+++|+|.+.+.-+.+...
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVD 61 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 34567777887776 99999999999999999999887766766543
No 479
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.05 E-value=0.00015 Score=77.94 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=39.4
Q ss_pred hcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 411 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 411 ~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 14 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 65 (257)
T PRK10619 14 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65 (257)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 343344677788888877 89999999999999999999987766766543
No 480
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.04 E-value=0.0001 Score=80.12 Aligned_cols=42 Identities=36% Similarity=0.482 Sum_probs=34.2
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhccccc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
+.+...+.++++.+..| ++|+||||+|||||+++|+|.+.+.
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 33344677788887777 9999999999999999999987654
No 481
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.04 E-value=0.0015 Score=68.68 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.6
Q ss_pred CceEEEECCCCCCchhHHHhhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~ 448 (859)
|.-++|||+||+||||+|+.+++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45599999999999999999975
No 482
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.03 E-value=0.0018 Score=66.98 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=55.6
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec--cccchhhhcccchhhhhHHHHHHhc-CCcEEEh
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA--SQFVEIYVGVGASRVRSLYQEAKDN-APSVVFI 491 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~--s~~~~~~~g~~~~~l~~lfe~a~~~-~p~Il~i 491 (859)
.+..+++.++.| +.+.|.||+|||||+++|||.+.+..+.|.. .+....-..+....+..+|+..... .|...+-
T Consensus 21 ~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTie 100 (263)
T COG1101 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIE 100 (263)
T ss_pred HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHH
Confidence 345667778877 8899999999999999999999887766543 3333333444445567778776543 3554443
Q ss_pred hhhHhhhhccC
Q 003000 492 DELDAVGRERG 502 (859)
Q Consensus 492 DEId~l~~~r~ 502 (859)
+++ .+...|+
T Consensus 101 ENl-~la~~Rg 110 (263)
T COG1101 101 ENL-ALAESRG 110 (263)
T ss_pred HHH-HHHHhcC
Confidence 333 4444443
No 483
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.03 E-value=0.0021 Score=74.89 Aligned_cols=73 Identities=22% Similarity=0.444 Sum_probs=50.7
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhh------hcc--------cchhhhhHHHHHHhcCCcEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY------VGV--------GASRVRSLYQEAKDNAPSVV 489 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~------~g~--------~~~~l~~lfe~a~~~~p~Il 489 (859)
.-++|+|+||+|||||+..++... +...++++..+..... +|. ....+..+++.+....|.++
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lV 160 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLV 160 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEE
Confidence 338999999999999999998755 4566777765433221 111 11234556667777789999
Q ss_pred EhhhhHhhhh
Q 003000 490 FIDELDAVGR 499 (859)
Q Consensus 490 ~iDEId~l~~ 499 (859)
+||.+..+..
T Consensus 161 VIDSIq~l~~ 170 (446)
T PRK11823 161 VIDSIQTMYS 170 (446)
T ss_pred EEechhhhcc
Confidence 9999988754
No 484
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.03 E-value=0.00011 Score=79.09 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=38.1
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+.+...+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 11 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (256)
T TIGR03873 11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60 (256)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 33344667778877776 9999999999999999999988776666554
No 485
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.02 E-value=0.00035 Score=73.63 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=36.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 69 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence 567777777776 9999999999999999999988777676654
No 486
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.02 E-value=0.00014 Score=77.07 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=36.6
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 64 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 34567777777777 9999999999999999999988776666544
No 487
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00014 Score=78.81 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=33.6
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
...++.++.++.| +.++|.+|.|||||+|++-+--.+..+.+
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v 63 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence 3556788888888 99999999999999999977555554444
No 488
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.01 E-value=0.00015 Score=78.49 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=38.2
Q ss_pred hcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 411 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 411 ~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 20 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 70 (265)
T PRK10575 20 RVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 (265)
T ss_pred EECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 343334677788888777 8999999999999999999987766665543
No 489
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00045 Score=83.82 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=36.5
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.|.+
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~ 383 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIF 383 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEE
Confidence 567888888887 9999999999999999999988766666544
No 490
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00037 Score=74.27 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=36.2
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 3567777887777 8999999999999999999988776666544
No 491
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.00 E-value=0.00082 Score=67.25 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.4
Q ss_pred CceEEEECCCCCCchhHHHhhhhc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~e 449 (859)
++..+++||||+|||+++++++-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998643
No 492
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.00 E-value=0.00036 Score=75.17 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=37.3
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~ 61 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 334677778888777 8999999999999999999988776666554
No 493
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.00 E-value=0.0064 Score=75.27 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~e 449 (859)
..++|+||||+|||||+|.|++.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 34999999999999999999986
No 494
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.99 E-value=0.00016 Score=75.93 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=35.8
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.+..| ++|.||||+|||||+++|+|.+.+..+.+..
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF 59 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4566777777766 8999999999999999999988776666644
No 495
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.98 E-value=0.0018 Score=68.84 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=23.5
Q ss_pred eEEEECCCCCCchhHH-Hhhhhcc--cccEEEeecc
Q 003000 428 GILLCGPPGVGKTLLA-KAVAGEA--GVNFFSISAS 460 (859)
Q Consensus 428 gvLL~GPpGtGKTtLa-kaLA~el--~~~~~~is~s 460 (859)
-++|+||||||||||+ +.+++.+ +....+++..
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3999999999999996 5555443 4455556543
No 496
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.98 E-value=0.00081 Score=74.51 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=48.1
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh----------h-----cccchhhhhHHHHHHhcCCc
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY----------V-----GVGASRVRSLYQEAKDNAPS 487 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~----------~-----g~~~~~l~~lfe~a~~~~p~ 487 (859)
+.....++++||+|+|||||+++|++.+......+...+..+.. . +...-.+..++..+.+..|+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 33445699999999999999999999875443333222211110 0 00112235577777788999
Q ss_pred EEEhhhhHh
Q 003000 488 VVFIDELDA 496 (859)
Q Consensus 488 Il~iDEId~ 496 (859)
++++||+..
T Consensus 221 ~ii~gE~r~ 229 (308)
T TIGR02788 221 RIILGELRG 229 (308)
T ss_pred eEEEeccCC
Confidence 999999963
No 497
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.98 E-value=0.0009 Score=80.29 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=41.9
Q ss_pred HHHHHhcc-cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 406 EEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 406 ~~~v~~~~-~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+++...|. +...++++++.+++| +.|+||+|+||||+++.|.+...+..|.|..
T Consensus 332 ~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 332 ENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred EEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 33444444 456778888888887 9999999999999999999988776655543
No 498
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.98 E-value=0.0043 Score=69.33 Aligned_cols=161 Identities=20% Similarity=0.276 Sum_probs=89.2
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhccccc--EEEeeccccchhh-------h-cccc-----------hhhhhHHHHH
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVN--FFSISASQFVEIY-------V-GVGA-----------SRVRSLYQEA 481 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~~--~~~is~s~~~~~~-------~-g~~~-----------~~l~~lfe~a 481 (859)
-.+|+|+.|||.-|||||+|.-..-+.+... --+|...+|+... . .++. ..+.-+-+..
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 4568999999999999999999988766431 1123333333210 0 0000 0111122222
Q ss_pred HhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC-CCCCccCCCCCcccccccC
Q 003000 482 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-DILDPALVRPGRFDRKIFI 560 (859)
Q Consensus 482 ~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~-~~LdpaLlrpgRfd~~I~~ 560 (859)
. ...+++.+||+..---. .-.+|+.|...|- ..+|++++|+|+. +.|-..= +.+...+
T Consensus 191 a-~ea~lLCFDEfQVTDVA-----------DAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknG-----lQR~~F~ 249 (467)
T KOG2383|consen 191 A-EEAILLCFDEFQVTDVA-----------DAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNG-----LQRENFI 249 (467)
T ss_pred h-hhceeeeechhhhhhHH-----------HHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcc-----hhhhhhh
Confidence 2 22468999998432100 0114555554443 3488999999873 4443322 2223333
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCC-C--CCHH-HHHHHHHHHH
Q 003000 561 PKPGLIGRMEILKVHARKKPMADDVDYLAVASMTD-G--MVGA-ELANIVEVAA 610 (859)
Q Consensus 561 ~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~-G--~sga-dL~~Lv~~A~ 610 (859)
| -..+|+.++.-..+++.+|+...+.... + |.+. |...++++--
T Consensus 250 P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 250 P------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred h------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 2 3578888888888888899983332221 1 3333 7777776654
No 499
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=96.97 E-value=0.00045 Score=70.55 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=47.1
Q ss_pred HHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 404 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 404 ~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++.+.|+......+.++.+..| +.|.||||.||||..-.+.|-..+..+.+-..
T Consensus 6 ~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld 64 (243)
T COG1137 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD 64 (243)
T ss_pred EehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEEC
Confidence 3466778888887888888888888 99999999999999999999887777665443
No 500
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.97 E-value=0.0067 Score=70.79 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.2
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
+||+|.||||||-++|.+++.....++.
T Consensus 485 vLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 485 VLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred EEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 9999999999999999999876655544
Done!