Query 003000
Match_columns 859
No_of_seqs 655 out of 5389
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 8.9E-70 3.1E-74 625.1 42.4 428 387-821 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 4.1E-67 1.4E-71 606.2 42.2 427 388-823 26-470 (499)
3 4b4t_J 26S protease regulatory 100.0 3.7E-44 1.3E-48 401.2 21.7 252 385-636 140-392 (405)
4 4b4t_I 26S protease regulatory 100.0 7.3E-43 2.5E-47 391.6 24.5 252 385-636 174-426 (437)
5 4b4t_H 26S protease regulatory 100.0 1.4E-42 4.7E-47 392.8 22.1 251 386-636 202-453 (467)
6 4b4t_L 26S protease subunit RP 100.0 3E-42 1E-46 391.2 24.1 252 385-636 173-425 (437)
7 4b4t_M 26S protease regulatory 100.0 2.9E-42 9.9E-47 391.0 22.2 251 385-635 173-424 (434)
8 4b4t_K 26S protease regulatory 100.0 2.2E-41 7.4E-46 383.6 23.3 251 385-635 164-416 (428)
9 2di4_A Zinc protease, cell div 100.0 2.7E-40 9.2E-45 345.1 18.6 178 643-824 11-204 (238)
10 3cf2_A TER ATPase, transitiona 100.0 3.4E-37 1.2E-41 371.9 6.2 231 386-616 470-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 2E-34 6.7E-39 347.9 18.8 247 386-635 197-461 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 7.1E-32 2.4E-36 286.3 25.9 251 386-636 5-255 (257)
13 2x8a_A Nuclear valosin-contain 100.0 2.1E-32 7.2E-37 294.5 16.6 246 387-635 4-266 (274)
14 3cf0_A Transitional endoplasmi 100.0 2.3E-31 8E-36 289.8 20.8 248 386-633 8-281 (301)
15 1ixz_A ATP-dependent metallopr 100.0 6E-31 2.1E-35 278.7 22.6 247 384-630 7-253 (254)
16 3h4m_A Proteasome-activating n 100.0 4.2E-30 1.4E-34 276.1 22.5 251 386-636 10-261 (285)
17 1iy2_A ATP-dependent metallopr 100.0 1.8E-29 6.1E-34 271.4 22.9 245 386-630 33-277 (278)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 4.1E-30 1.4E-34 272.1 16.2 248 389-636 2-252 (262)
19 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.1E-28 3.8E-33 271.5 22.6 225 386-616 5-233 (322)
20 3eie_A Vacuolar protein sortin 100.0 4.2E-29 1.4E-33 274.5 16.9 229 382-616 7-238 (322)
21 2r62_A Cell division protease 100.0 7.5E-30 2.6E-34 272.0 7.0 247 387-633 5-253 (268)
22 3hu3_A Transitional endoplasmi 100.0 4.1E-28 1.4E-32 280.8 21.5 244 388-634 199-460 (489)
23 2qp9_X Vacuolar protein sortin 100.0 4.2E-28 1.4E-32 270.3 19.2 225 386-616 44-271 (355)
24 2zan_A Vacuolar protein sortin 99.9 1.4E-27 4.9E-32 273.7 19.2 226 385-616 126-355 (444)
25 1ypw_A Transitional endoplasmi 99.9 2.5E-29 8.7E-34 307.4 0.7 232 386-617 470-702 (806)
26 3b9p_A CG5977-PA, isoform A; A 99.9 1.9E-25 6.6E-30 241.4 18.6 242 385-632 13-271 (297)
27 3d8b_A Fidgetin-like protein 1 99.9 4.2E-25 1.4E-29 246.2 21.9 245 386-636 77-337 (357)
28 3vfd_A Spastin; ATPase, microt 99.9 1.4E-24 4.7E-29 244.7 20.6 244 384-633 106-365 (389)
29 3t15_A Ribulose bisphosphate c 99.9 2.2E-26 7.6E-31 249.8 4.4 228 420-662 30-280 (293)
30 1ypw_A Transitional endoplasmi 99.9 6E-23 2.1E-27 251.1 21.4 244 387-633 198-459 (806)
31 1qvr_A CLPB protein; coiled co 99.9 5.1E-23 1.8E-27 253.9 14.7 354 218-613 388-819 (854)
32 3pxi_A Negative regulator of g 99.8 2.2E-19 7.7E-24 218.8 12.5 288 223-611 386-722 (758)
33 2c9o_A RUVB-like 1; hexameric 99.8 4.3E-21 1.5E-25 220.7 -4.7 204 388-608 32-262 (456)
34 3syl_A Protein CBBX; photosynt 99.8 1.9E-18 6.4E-23 187.3 12.2 222 394-627 32-280 (309)
35 3uk6_A RUVB-like 2; hexameric 99.7 5.9E-18 2E-22 187.9 14.1 220 388-633 39-330 (368)
36 3m6a_A ATP-dependent protease 99.7 4.6E-18 1.6E-22 199.5 9.3 243 369-632 51-340 (543)
37 3pfi_A Holliday junction ATP-d 99.7 2.8E-16 9.6E-21 172.6 19.5 214 388-633 24-254 (338)
38 1ofh_A ATP-dependent HSL prote 99.7 4.8E-16 1.7E-20 167.7 13.9 235 394-632 16-298 (310)
39 1hqc_A RUVB; extended AAA-ATPa 99.7 1.5E-15 5.1E-20 165.4 17.7 212 389-633 8-238 (324)
40 1d2n_A N-ethylmaleimide-sensit 99.6 1.2E-15 4E-20 162.9 13.9 193 422-632 60-263 (272)
41 1g41_A Heat shock protein HSLU 99.6 2E-16 6.7E-21 179.9 6.9 170 393-574 15-190 (444)
42 3hws_A ATP-dependent CLP prote 99.6 1.7E-15 5.9E-20 168.7 14.1 220 395-616 17-325 (363)
43 1r6b_X CLPA protein; AAA+, N-t 99.6 2.3E-16 7.9E-21 192.2 7.3 225 362-611 420-713 (758)
44 2z4s_A Chromosomal replication 99.6 2.3E-15 8E-20 172.2 11.7 191 426-633 130-332 (440)
45 2r44_A Uncharacterized protein 99.6 8.8E-15 3E-19 160.4 13.8 213 392-636 26-300 (331)
46 2v1u_A Cell division control p 99.6 3.1E-14 1.1E-18 157.8 17.8 222 393-634 19-277 (387)
47 2chg_A Replication factor C sm 99.6 4.9E-14 1.7E-18 142.9 16.6 201 388-631 12-224 (226)
48 1g8p_A Magnesium-chelatase 38 99.6 1.9E-14 6.6E-19 158.1 14.5 218 388-636 19-325 (350)
49 1l8q_A Chromosomal replication 99.5 3.2E-14 1.1E-18 155.6 14.7 191 426-634 37-241 (324)
50 3bos_A Putative DNA replicatio 99.5 3.2E-14 1.1E-18 147.0 13.1 180 426-631 52-241 (242)
51 3pvs_A Replication-associated 99.5 2E-14 6.7E-19 164.7 11.6 204 388-632 21-243 (447)
52 1njg_A DNA polymerase III subu 99.5 1.3E-13 4.3E-18 141.4 15.8 208 388-630 18-248 (250)
53 3u61_B DNA polymerase accessor 99.5 3.2E-14 1.1E-18 155.4 11.9 202 386-631 19-235 (324)
54 4fcw_A Chaperone protein CLPB; 99.5 2.9E-14 9.8E-19 154.3 11.4 199 395-613 19-278 (311)
55 1um8_A ATP-dependent CLP prote 99.5 9.3E-14 3.2E-18 155.3 14.0 202 426-629 72-361 (376)
56 1in4_A RUVB, holliday junction 99.5 7.6E-13 2.6E-17 145.8 20.6 212 391-634 23-251 (334)
57 2qby_B CDC6 homolog 3, cell di 99.5 3.2E-13 1.1E-17 150.1 17.2 212 393-634 20-271 (384)
58 2qby_A CDC6 homolog 1, cell di 99.5 5.5E-13 1.9E-17 147.5 17.6 221 392-634 19-273 (386)
59 3te6_A Regulatory protein SIR3 99.5 2.9E-14 9.7E-19 155.9 6.7 139 424-579 43-214 (318)
60 1sxj_D Activator 1 41 kDa subu 99.5 3.1E-13 1.1E-17 148.5 14.9 207 387-631 31-261 (353)
61 1fnn_A CDC6P, cell division co 99.5 1.1E-12 3.6E-17 145.9 18.7 219 392-634 16-275 (389)
62 1r6b_X CLPA protein; AAA+, N-t 99.5 5.3E-13 1.8E-17 162.6 17.4 221 390-634 183-434 (758)
63 1sxj_A Activator 1 95 kDa subu 99.4 5E-13 1.7E-17 155.9 15.1 224 386-633 32-274 (516)
64 3pxg_A Negative regulator of g 99.4 4.4E-13 1.5E-17 154.5 14.2 205 389-633 176-406 (468)
65 2chq_A Replication factor C sm 99.4 8.1E-13 2.8E-17 142.8 15.1 203 385-630 9-223 (319)
66 3f9v_A Minichromosome maintena 99.4 3.1E-13 1E-17 160.1 11.7 189 428-636 329-590 (595)
67 1jbk_A CLPB protein; beta barr 99.4 1.3E-13 4.3E-18 136.6 6.5 158 390-572 19-194 (195)
68 1sxj_B Activator 1 37 kDa subu 99.4 3.2E-12 1.1E-16 138.3 15.2 202 387-631 15-229 (323)
69 1jr3_A DNA polymerase III subu 99.4 4.3E-12 1.5E-16 140.4 16.1 208 388-630 11-241 (373)
70 3pxi_A Negative regulator of g 99.4 2.8E-12 9.6E-17 156.3 14.8 188 389-616 176-388 (758)
71 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 3.9E-13 1.3E-17 155.6 6.4 187 427-631 42-283 (500)
72 1iqp_A RFCS; clamp loader, ext 99.3 6.3E-12 2.2E-16 136.2 15.0 201 387-630 19-231 (327)
73 1qvr_A CLPB protein; coiled co 99.3 2.7E-12 9.2E-17 158.4 13.2 203 389-616 166-395 (854)
74 2p65_A Hypothetical protein PF 99.3 1.2E-12 4.1E-17 129.4 5.3 151 390-564 19-187 (187)
75 1sxj_C Activator 1 40 kDa subu 99.3 1E-11 3.4E-16 136.8 12.3 206 387-630 19-236 (340)
76 2bjv_A PSP operon transcriptio 99.3 7.3E-12 2.5E-16 132.8 10.4 205 390-626 3-250 (265)
77 1sxj_E Activator 1 40 kDa subu 99.2 3.6E-11 1.2E-15 132.4 12.1 196 385-611 6-242 (354)
78 1ojl_A Transcriptional regulat 99.2 4.2E-11 1.4E-15 130.3 10.5 201 395-627 4-246 (304)
79 3kw6_A 26S protease regulatory 99.1 1.3E-10 4.4E-15 100.7 9.5 76 561-636 1-76 (78)
80 3k1j_A LON protease, ATP-depen 99.1 7.3E-11 2.5E-15 140.2 10.3 133 484-632 200-374 (604)
81 1a5t_A Delta prime, HOLB; zinc 99.1 1.6E-10 5.5E-15 127.2 11.2 159 424-609 22-208 (334)
82 2krk_A 26S protease regulatory 99.1 1.9E-10 6.6E-15 101.6 8.8 78 559-636 7-84 (86)
83 1w5s_A Origin recognition comp 99.0 2.1E-09 7E-14 120.4 16.8 223 393-633 22-293 (412)
84 3n70_A Transport activator; si 99.0 2.1E-10 7.3E-15 110.7 6.7 89 427-541 25-116 (145)
85 3vlf_B 26S protease regulatory 99.0 7.7E-10 2.6E-14 98.2 9.0 73 564-636 2-74 (88)
86 2gno_A DNA polymerase III, gam 98.9 1.2E-09 4.2E-14 118.8 9.1 125 426-576 18-152 (305)
87 3co5_A Putative two-component 98.9 9E-10 3.1E-14 106.1 6.8 110 396-541 7-116 (143)
88 3aji_B S6C, proteasome (prosom 98.8 5.2E-09 1.8E-13 91.5 7.4 73 564-636 2-74 (83)
89 3cmw_A Protein RECA, recombina 98.8 6.9E-09 2.3E-13 133.7 9.4 155 386-541 1013-1218(1706)
90 4akg_A Glutathione S-transfera 98.7 4.3E-09 1.5E-13 141.0 6.0 139 425-578 1266-1433(2695)
91 3ec2_A DNA replication protein 98.7 2.6E-08 9E-13 99.0 8.4 104 424-542 36-144 (180)
92 2dzn_B 26S protease regulatory 98.7 5.7E-09 1.9E-13 91.2 2.8 71 566-636 1-71 (82)
93 2kjq_A DNAA-related protein; s 98.6 2.5E-08 8.5E-13 97.0 4.6 58 426-498 36-96 (149)
94 3f8t_A Predicted ATPase involv 98.6 2.6E-07 8.9E-12 104.9 13.4 187 428-636 241-486 (506)
95 2vhj_A Ntpase P4, P4; non- hyd 98.4 1E-07 3.6E-12 103.6 3.9 117 427-548 124-242 (331)
96 1ny5_A Transcriptional regulat 98.4 1.4E-06 4.8E-11 97.7 12.7 179 428-629 162-383 (387)
97 1svm_A Large T antigen; AAA+ f 98.3 2.2E-07 7.5E-12 103.9 4.9 119 422-562 165-284 (377)
98 2w58_A DNAI, primosome compone 98.3 1.9E-07 6.4E-12 94.4 2.2 70 426-497 54-127 (202)
99 2fna_A Conserved hypothetical 98.2 4.2E-06 1.5E-10 90.9 11.6 164 427-607 31-251 (357)
100 2qen_A Walker-type ATPase; unk 98.1 1.1E-05 3.9E-10 87.4 12.9 165 427-606 32-246 (350)
101 4akg_A Glutathione S-transfera 98.1 1.2E-05 4.2E-10 108.2 14.3 165 426-612 645-839 (2695)
102 2r2a_A Uncharacterized protein 98.1 1.9E-06 6.6E-11 87.8 5.0 128 427-566 6-156 (199)
103 3dzd_A Transcriptional regulat 98.1 6.4E-06 2.2E-10 91.8 9.6 166 428-612 154-360 (368)
104 3fvq_A Fe(3+) IONS import ATP- 98.1 1.1E-06 3.6E-11 97.5 2.8 50 411-460 13-64 (359)
105 3rlf_A Maltose/maltodextrin im 98.0 1.1E-06 3.6E-11 98.2 1.9 49 412-460 13-63 (381)
106 3gfo_A Cobalt import ATP-bindi 98.0 1.9E-06 6.4E-11 92.3 2.3 44 417-460 23-68 (275)
107 2qgz_A Helicase loader, putati 98.0 1.1E-06 3.6E-11 95.7 0.3 70 426-497 152-226 (308)
108 1z47_A CYSA, putative ABC-tran 98.0 2.7E-06 9.4E-11 94.2 3.5 45 416-460 29-75 (355)
109 1ye8_A Protein THEP1, hypothet 97.9 1.1E-05 3.8E-10 80.6 7.3 26 429-454 3-28 (178)
110 2c9o_A RUVB-like 1; hexameric 97.9 1.2E-05 4.2E-10 91.9 8.6 128 486-633 296-437 (456)
111 1jr3_D DNA polymerase III, del 97.9 1.2E-05 4.2E-10 88.1 8.0 178 424-633 16-209 (343)
112 1v43_A Sugar-binding transport 97.9 3.5E-06 1.2E-10 93.9 3.7 49 412-460 21-71 (372)
113 2yyz_A Sugar ABC transporter, 97.9 2.8E-06 9.7E-11 94.2 2.6 49 412-460 13-63 (359)
114 2it1_A 362AA long hypothetical 97.9 2.9E-06 1E-10 94.2 2.6 49 412-460 13-63 (362)
115 3cmu_A Protein RECA, recombina 97.9 1.3E-05 4.4E-10 104.8 8.3 116 423-538 1424-1561(2050)
116 2pcj_A ABC transporter, lipopr 97.8 2.9E-06 9.8E-11 88.0 0.9 45 415-459 17-63 (224)
117 3tif_A Uncharacterized ABC tra 97.8 7.4E-06 2.5E-10 85.5 3.8 44 417-460 20-65 (235)
118 1oxx_K GLCV, glucose, ABC tran 97.8 3.4E-06 1.2E-10 93.4 1.1 43 417-459 20-64 (353)
119 1g29_1 MALK, maltose transport 97.8 4E-06 1.4E-10 93.5 1.4 48 412-459 13-62 (372)
120 3d31_A Sulfate/molybdate ABC t 97.8 4.9E-06 1.7E-10 92.0 1.3 44 417-460 15-60 (348)
121 4g1u_C Hemin import ATP-bindin 97.8 7.5E-06 2.6E-10 87.2 2.5 47 412-458 21-69 (266)
122 2cbz_A Multidrug resistance-as 97.7 3.1E-05 1.1E-09 80.9 6.5 45 416-460 19-65 (237)
123 2nq2_C Hypothetical ABC transp 97.7 2.2E-05 7.6E-10 82.9 4.8 43 416-458 19-63 (253)
124 2pjz_A Hypothetical protein ST 97.7 4.5E-05 1.5E-09 81.1 7.1 43 416-460 19-63 (263)
125 2ff7_A Alpha-hemolysin translo 97.7 3.9E-05 1.3E-09 80.7 6.6 45 416-460 23-69 (247)
126 2qi9_C Vitamin B12 import ATP- 97.7 2.5E-05 8.5E-10 82.3 4.8 43 417-460 15-59 (249)
127 3tui_C Methionine import ATP-b 97.7 9.4E-06 3.2E-10 90.1 1.6 44 417-460 43-88 (366)
128 3vkg_A Dynein heavy chain, cyt 97.6 1.9E-05 6.6E-10 107.0 4.3 137 426-577 1304-1470(3245)
129 2pze_A Cystic fibrosis transme 97.6 3.8E-05 1.3E-09 79.8 5.5 45 416-460 22-68 (229)
130 2bbs_A Cystic fibrosis transme 97.6 5.4E-05 1.8E-09 81.6 6.7 56 403-460 41-98 (290)
131 2ehv_A Hypothetical protein PH 97.6 0.00016 5.3E-09 74.8 9.5 21 427-447 31-51 (251)
132 3nh6_A ATP-binding cassette SU 97.6 5.2E-05 1.8E-09 82.3 5.3 45 416-460 68-114 (306)
133 2onk_A Molybdate/tungstate ABC 97.5 2.3E-05 8E-10 82.1 2.3 43 418-460 15-58 (240)
134 1tue_A Replication protein E1; 97.5 2E-05 6.9E-10 80.3 1.5 26 427-452 59-84 (212)
135 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00011 3.7E-09 74.8 6.7 24 427-450 24-47 (235)
136 4a74_A DNA repair and recombin 97.5 7.1E-05 2.4E-09 76.3 4.9 23 428-450 27-49 (231)
137 4gp7_A Metallophosphoesterase; 97.5 1.6E-05 5.5E-10 78.5 -0.1 26 422-447 3-30 (171)
138 3vkg_A Dynein heavy chain, cyt 97.5 0.00017 5.7E-09 98.2 9.2 126 427-573 605-750 (3245)
139 2eyu_A Twitching motility prot 97.5 5.9E-05 2E-09 80.0 4.0 67 429-495 28-108 (261)
140 1htw_A HI0065; nucleotide-bind 97.4 3.9E-05 1.3E-09 75.2 2.1 42 417-459 22-65 (158)
141 1g6h_A High-affinity branched- 97.4 6.3E-05 2.2E-09 79.5 3.0 49 412-460 17-67 (257)
142 1b0u_A Histidine permease; ABC 97.4 6.4E-05 2.2E-09 79.7 2.8 49 412-460 16-66 (262)
143 1ji0_A ABC transporter; ATP bi 97.3 6.5E-05 2.2E-09 78.6 2.4 47 414-460 18-66 (240)
144 3ozx_A RNAse L inhibitor; ATP 97.3 0.00012 4.2E-09 85.5 4.8 113 422-540 288-415 (538)
145 2olj_A Amino acid ABC transpor 97.3 7.7E-05 2.6E-09 79.2 2.8 49 412-460 34-84 (263)
146 2pt7_A CAG-ALFA; ATPase, prote 97.3 5.9E-05 2E-09 82.7 1.9 69 428-496 173-251 (330)
147 1sgw_A Putative ABC transporte 97.3 7.3E-05 2.5E-09 76.9 2.4 45 416-460 23-69 (214)
148 3qf4_B Uncharacterized ABC tra 97.3 0.00034 1.1E-08 82.8 8.2 45 416-460 369-415 (598)
149 1vpl_A ABC transporter, ATP-bi 97.3 8.6E-05 2.9E-09 78.5 2.8 47 414-460 27-75 (256)
150 2cvh_A DNA repair and recombin 97.3 0.00022 7.6E-09 72.1 5.7 35 427-461 21-55 (220)
151 2ihy_A ABC transporter, ATP-bi 97.3 8E-05 2.7E-09 79.8 2.4 49 412-460 31-81 (279)
152 3hr8_A Protein RECA; alpha and 97.3 0.00029 1E-08 77.9 6.8 109 428-537 63-194 (356)
153 3jvv_A Twitching mobility prot 97.2 0.00013 4.5E-09 80.8 3.8 70 426-495 122-206 (356)
154 1n0w_A DNA repair protein RAD5 97.2 0.00024 8.1E-09 73.1 5.2 35 427-461 25-68 (243)
155 2yl4_A ATP-binding cassette SU 97.2 0.00028 9.6E-09 83.4 6.4 44 417-460 359-404 (595)
156 4a82_A Cystic fibrosis transme 97.2 0.00032 1.1E-08 82.6 6.7 45 416-460 355-401 (578)
157 3b5x_A Lipid A export ATP-bind 97.2 0.00041 1.4E-08 81.8 7.6 44 416-459 357-402 (582)
158 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00012 4.1E-09 85.6 2.8 113 419-541 303-432 (538)
159 2ixe_A Antigen peptide transpo 97.2 0.00013 4.6E-09 77.7 3.0 45 416-460 33-79 (271)
160 2zr9_A Protein RECA, recombina 97.2 0.00027 9.2E-09 78.1 5.3 77 423-499 58-153 (349)
161 3b60_A Lipid A export ATP-bind 97.1 0.0004 1.4E-08 81.9 6.8 45 416-460 357-403 (582)
162 1mv5_A LMRA, multidrug resista 97.1 0.00011 3.6E-09 77.1 1.7 44 416-459 16-61 (243)
163 2ewv_A Twitching motility prot 97.1 0.00022 7.5E-09 79.5 4.0 79 417-495 127-219 (372)
164 3vaa_A Shikimate kinase, SK; s 97.1 0.00016 5.3E-09 72.9 2.6 39 419-457 16-56 (199)
165 2yz2_A Putative ABC transporte 97.1 0.00016 5.6E-09 76.7 2.8 44 417-460 22-67 (266)
166 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00014 4.8E-09 76.5 2.1 45 415-459 16-64 (250)
167 1pzn_A RAD51, DNA repair and r 97.1 0.0003 1E-08 77.7 4.6 29 422-450 125-155 (349)
168 3bk7_A ABC transporter ATP-bin 97.1 0.00017 6E-09 85.3 2.8 38 421-458 375-414 (607)
169 3qf4_A ABC transporter, ATP-bi 97.1 0.00061 2.1E-08 80.4 7.2 45 416-460 357-403 (587)
170 2zu0_C Probable ATP-dependent 97.0 0.00019 6.5E-09 76.3 2.4 48 412-459 30-81 (267)
171 1zp6_A Hypothetical protein AT 97.0 0.00034 1.2E-08 69.4 3.8 34 428-461 11-44 (191)
172 3nwj_A ATSK2; P loop, shikimat 97.0 0.00016 5.6E-09 76.1 0.9 43 415-457 32-79 (250)
173 1qhx_A CPT, protein (chloramph 96.9 0.00039 1.3E-08 68.1 3.6 36 427-462 4-39 (178)
174 4f4c_A Multidrug resistance pr 96.9 0.00059 2E-08 87.8 5.9 46 416-461 432-479 (1321)
175 2ghi_A Transport protein; mult 96.9 0.00033 1.1E-08 74.1 2.9 42 417-459 35-78 (260)
176 1xp8_A RECA protein, recombina 96.9 0.0013 4.5E-08 73.0 7.8 115 422-537 70-207 (366)
177 3ozx_A RNAse L inhibitor; ATP 96.9 0.001 3.5E-08 77.6 6.8 40 418-457 14-56 (538)
178 1kag_A SKI, shikimate kinase I 96.8 0.00051 1.8E-08 66.9 3.3 28 428-455 6-33 (173)
179 1g41_A Heat shock protein HSLU 96.8 0.0028 9.5E-08 72.0 9.4 139 487-631 252-431 (444)
180 1z6g_A Guanylate kinase; struc 96.8 0.00044 1.5E-08 70.9 2.5 34 417-450 12-47 (218)
181 2iw3_A Elongation factor 3A; a 96.8 0.00062 2.1E-08 84.1 4.3 37 412-448 445-483 (986)
182 3lda_A DNA repair protein RAD5 96.7 0.0012 4.3E-08 74.1 6.0 112 427-539 179-326 (400)
183 3trf_A Shikimate kinase, SK; a 96.7 0.0006 2E-08 67.3 3.0 32 426-457 5-36 (185)
184 1u94_A RECA protein, recombina 96.7 0.0013 4.6E-08 72.7 6.1 77 423-499 60-155 (356)
185 2v9p_A Replication protein E1; 96.7 0.00028 9.4E-09 76.5 0.6 47 403-450 102-150 (305)
186 3j16_B RLI1P; ribosome recycli 96.7 0.0014 4.7E-08 77.6 6.5 29 429-457 106-134 (608)
187 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0015 5E-08 76.4 6.5 38 418-456 38-77 (538)
188 3j16_B RLI1P; ribosome recycli 96.7 0.0009 3.1E-08 79.2 4.7 38 418-455 363-407 (608)
189 3gd7_A Fusion complex of cysti 96.7 0.00051 1.7E-08 76.9 2.4 45 415-460 34-80 (390)
190 2jeo_A Uridine-cytidine kinase 96.7 0.00056 1.9E-08 71.3 2.5 37 417-453 14-52 (245)
191 3kb2_A SPBC2 prophage-derived 96.7 0.00072 2.5E-08 65.5 3.1 31 428-458 3-33 (173)
192 2z43_A DNA repair and recombin 96.7 0.0018 6.1E-08 70.5 6.6 113 423-537 104-254 (324)
193 3g5u_A MCG1178, multidrug resi 96.7 0.001 3.5E-08 85.3 5.3 45 416-460 404-450 (1284)
194 3thx_B DNA mismatch repair pro 96.7 0.00096 3.3E-08 82.3 4.7 32 417-448 662-695 (918)
195 2gza_A Type IV secretion syste 96.7 0.00058 2E-08 75.7 2.5 77 419-495 166-262 (361)
196 2oap_1 GSPE-2, type II secreti 96.7 0.00048 1.6E-08 79.9 1.9 69 427-495 261-343 (511)
197 2rhm_A Putative kinase; P-loop 96.7 0.00073 2.5E-08 66.9 2.9 31 426-456 5-35 (193)
198 1v5w_A DMC1, meiotic recombina 96.6 0.0017 5.7E-08 71.5 6.1 108 429-538 125-271 (343)
199 2p5t_B PEZT; postsegregational 96.6 0.0012 4.1E-08 69.2 4.7 38 425-462 31-68 (253)
200 2b8t_A Thymidine kinase; deoxy 96.6 0.0058 2E-07 63.1 9.5 69 429-497 15-101 (223)
201 1y63_A LMAJ004144AAA protein; 96.6 0.00085 2.9E-08 66.6 2.9 30 428-457 12-42 (184)
202 1via_A Shikimate kinase; struc 96.6 0.0008 2.8E-08 66.0 2.5 29 428-456 6-34 (175)
203 3g5u_A MCG1178, multidrug resi 96.6 0.0014 4.8E-08 84.1 5.3 44 417-460 1048-1093(1284)
204 1nlf_A Regulatory protein REPA 96.5 0.0023 8E-08 67.8 6.2 23 428-450 32-54 (279)
205 4eun_A Thermoresistant glucoki 96.5 0.001 3.5E-08 66.9 3.2 27 428-454 31-57 (200)
206 2orw_A Thymidine kinase; TMTK, 96.5 0.00078 2.7E-08 67.4 2.1 21 429-449 6-26 (184)
207 3bk7_A ABC transporter ATP-bin 96.5 0.0025 8.5E-08 75.4 6.7 39 417-456 107-147 (607)
208 3cmu_A Protein RECA, recombina 96.5 0.0029 1E-07 83.1 7.7 117 423-539 729-867 (2050)
209 3io5_A Recombination and repai 96.5 0.0027 9.1E-08 68.9 6.2 110 428-537 30-168 (333)
210 2ze6_A Isopentenyl transferase 96.5 0.0012 4.1E-08 69.4 3.1 31 429-459 4-34 (253)
211 1gvn_B Zeta; postsegregational 96.4 0.002 6.7E-08 69.1 4.9 36 426-461 33-68 (287)
212 1knq_A Gluconate kinase; ALFA/ 96.4 0.0012 4.1E-08 64.6 2.9 28 428-455 10-37 (175)
213 2dr3_A UPF0273 protein PH0284; 96.4 0.007 2.4E-07 62.0 8.9 33 427-459 24-59 (247)
214 3tr0_A Guanylate kinase, GMP k 96.4 0.0011 3.7E-08 66.4 2.6 23 429-451 10-32 (205)
215 1p9r_A General secretion pathw 96.4 0.00067 2.3E-08 76.7 1.0 29 425-453 165-194 (418)
216 3t61_A Gluconokinase; PSI-biol 96.4 0.0012 4.3E-08 66.2 2.9 30 427-456 19-48 (202)
217 3lw7_A Adenylate kinase relate 96.4 0.0012 4.1E-08 63.6 2.6 28 428-456 3-30 (179)
218 3e1s_A Exodeoxyribonuclease V, 96.4 0.0026 8.8E-08 74.9 5.9 24 427-450 205-228 (574)
219 1z6t_A APAF-1, apoptotic prote 96.4 0.0073 2.5E-07 70.7 9.8 144 428-599 149-322 (591)
220 1znw_A Guanylate kinase, GMP k 96.4 0.0011 3.9E-08 67.0 2.5 28 424-451 16-45 (207)
221 3thx_A DNA mismatch repair pro 96.4 0.0029 1E-07 78.2 6.5 30 418-447 652-683 (934)
222 3c8u_A Fructokinase; YP_612366 96.4 0.0017 5.7E-08 65.8 3.7 33 429-461 25-60 (208)
223 2iyv_A Shikimate kinase, SK; t 96.4 0.0012 4.2E-08 65.0 2.6 29 428-456 4-32 (184)
224 3iij_A Coilin-interacting nucl 96.4 0.0015 5.2E-08 64.2 3.2 30 427-456 12-41 (180)
225 3uie_A Adenylyl-sulfate kinase 96.4 0.0011 3.7E-08 66.7 2.2 24 428-451 27-50 (200)
226 3asz_A Uridine kinase; cytidin 96.3 0.0018 6.2E-08 65.3 3.7 32 429-460 9-40 (211)
227 4f4c_A Multidrug resistance pr 96.3 0.0014 4.8E-08 84.3 3.5 43 417-459 1094-1138(1321)
228 3a00_A Guanylate kinase, GMP k 96.3 0.0015 5.3E-08 64.8 3.1 27 428-454 3-29 (186)
229 2if2_A Dephospho-COA kinase; a 96.3 0.0013 4.4E-08 66.0 2.5 29 428-457 3-31 (204)
230 1u0j_A DNA replication protein 96.3 0.0019 6.6E-08 68.4 3.7 32 427-459 105-136 (267)
231 3sfz_A APAF-1, apoptotic pepti 96.3 0.027 9.2E-07 71.3 14.8 167 394-599 125-322 (1249)
232 1zuh_A Shikimate kinase; alpha 96.3 0.0015 5.2E-08 63.5 2.6 30 428-457 9-38 (168)
233 3b9q_A Chloroplast SRP recepto 96.3 0.002 6.7E-08 69.7 3.6 34 420-453 92-127 (302)
234 3cm0_A Adenylate kinase; ATP-b 96.3 0.0013 4.6E-08 64.7 2.1 28 428-455 6-33 (186)
235 3lnc_A Guanylate kinase, GMP k 96.2 0.0013 4.3E-08 67.7 1.9 33 419-451 18-53 (231)
236 1tev_A UMP-CMP kinase; ploop, 96.2 0.0017 5.9E-08 64.0 2.8 29 427-455 4-32 (196)
237 1cke_A CK, MSSA, protein (cyti 96.2 0.0019 6.5E-08 65.7 3.1 28 428-455 7-34 (227)
238 1e6c_A Shikimate kinase; phosp 96.2 0.0017 5.8E-08 63.1 2.6 29 428-456 4-32 (173)
239 2cdn_A Adenylate kinase; phosp 96.2 0.002 6.8E-08 64.6 3.0 30 428-457 22-51 (201)
240 1ly1_A Polynucleotide kinase; 96.2 0.0022 7.4E-08 62.5 3.2 27 427-453 3-30 (181)
241 2j41_A Guanylate kinase; GMP, 96.2 0.0023 7.7E-08 64.0 3.3 25 428-452 8-32 (207)
242 1jjv_A Dephospho-COA kinase; P 96.2 0.0019 6.6E-08 64.9 2.8 27 428-455 4-30 (206)
243 3dl0_A Adenylate kinase; phosp 96.2 0.0019 6.6E-08 65.4 2.8 29 429-457 3-31 (216)
244 1kht_A Adenylate kinase; phosp 96.2 0.0017 5.7E-08 64.0 2.2 24 428-451 5-28 (192)
245 1s96_A Guanylate kinase, GMP k 96.1 0.002 7E-08 66.3 2.8 24 429-452 19-42 (219)
246 3fb4_A Adenylate kinase; psych 96.1 0.002 6.7E-08 65.3 2.6 29 429-457 3-31 (216)
247 2c95_A Adenylate kinase 1; tra 96.1 0.0021 7.3E-08 63.6 2.7 30 427-456 10-39 (196)
248 1qf9_A UMP/CMP kinase, protein 96.1 0.0025 8.5E-08 62.8 3.0 31 426-456 6-36 (194)
249 3upu_A ATP-dependent DNA helic 96.1 0.0053 1.8E-07 70.1 6.2 23 428-450 47-69 (459)
250 2vli_A Antibiotic resistance p 96.1 0.0026 8.9E-08 62.3 3.1 29 427-455 6-34 (183)
251 1zd8_A GTP:AMP phosphotransfer 96.1 0.0024 8.2E-08 65.4 2.9 31 426-456 7-37 (227)
252 2bwj_A Adenylate kinase 5; pho 96.1 0.0024 8.1E-08 63.5 2.7 30 427-456 13-42 (199)
253 1wb9_A DNA mismatch repair pro 96.1 0.0041 1.4E-07 75.8 5.3 32 417-449 597-630 (800)
254 2pt5_A Shikimate kinase, SK; a 96.1 0.0023 8E-08 61.8 2.6 28 429-456 3-30 (168)
255 2bbw_A Adenylate kinase 4, AK4 96.0 0.0029 9.9E-08 65.7 3.2 28 426-453 27-54 (246)
256 1aky_A Adenylate kinase; ATP:A 96.0 0.0028 9.6E-08 64.5 3.1 30 427-456 5-34 (220)
257 3b85_A Phosphate starvation-in 96.0 0.0014 4.8E-08 67.0 0.7 28 429-457 25-52 (208)
258 1vma_A Cell division protein F 95.9 0.0093 3.2E-07 64.5 7.0 24 427-450 105-128 (306)
259 1sq5_A Pantothenate kinase; P- 95.9 0.0021 7.1E-08 69.5 1.8 23 429-451 83-105 (308)
260 1g5t_A COB(I)alamin adenosyltr 95.9 0.014 4.7E-07 59.1 7.7 100 429-541 31-163 (196)
261 2zts_A Putative uncharacterize 95.9 0.013 4.3E-07 60.1 7.7 33 427-459 31-67 (251)
262 1ukz_A Uridylate kinase; trans 95.9 0.0029 1E-07 63.3 2.7 30 428-457 17-46 (203)
263 2i1q_A DNA repair and recombin 95.9 0.0056 1.9E-07 66.3 5.2 108 428-537 100-255 (322)
264 3umf_A Adenylate kinase; rossm 95.9 0.0031 1E-07 64.9 2.9 40 423-464 26-65 (217)
265 3kta_A Chromosome segregation 95.9 0.0029 9.8E-08 62.2 2.6 33 420-452 19-52 (182)
266 2pez_A Bifunctional 3'-phospho 95.9 0.0042 1.4E-07 61.0 3.8 31 429-459 8-41 (179)
267 2og2_A Putative signal recogni 95.9 0.003 1E-07 69.9 2.9 33 421-453 150-184 (359)
268 3sr0_A Adenylate kinase; phosp 95.9 0.0033 1.1E-07 64.1 2.8 34 429-464 3-36 (206)
269 1kgd_A CASK, peripheral plasma 95.9 0.0036 1.2E-07 61.8 3.1 24 428-451 7-30 (180)
270 2jaq_A Deoxyguanosine kinase; 95.9 0.0035 1.2E-07 62.3 2.9 27 429-455 3-29 (205)
271 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.0022 7.5E-08 73.4 1.6 45 402-452 118-164 (460)
272 3be4_A Adenylate kinase; malar 95.8 0.0035 1.2E-07 63.9 2.9 30 428-457 7-36 (217)
273 1zak_A Adenylate kinase; ATP:A 95.8 0.0026 8.9E-08 64.8 1.8 29 427-455 6-34 (222)
274 2bdt_A BH3686; alpha-beta prot 95.8 0.0033 1.1E-07 62.2 2.5 22 429-450 5-26 (189)
275 2pbr_A DTMP kinase, thymidylat 95.8 0.0046 1.6E-07 60.9 3.5 30 429-458 3-35 (195)
276 1ak2_A Adenylate kinase isoenz 95.8 0.0038 1.3E-07 64.3 3.0 29 428-456 18-46 (233)
277 3tlx_A Adenylate kinase 2; str 95.8 0.0038 1.3E-07 65.0 3.0 31 426-456 29-59 (243)
278 2px0_A Flagellar biosynthesis 95.8 0.0096 3.3E-07 64.1 6.2 34 427-460 106-143 (296)
279 3tau_A Guanylate kinase, GMP k 95.8 0.0041 1.4E-07 63.0 3.0 24 429-452 11-34 (208)
280 2r8r_A Sensor protein; KDPD, P 95.8 0.026 8.8E-07 58.3 9.0 31 429-459 9-42 (228)
281 3szr_A Interferon-induced GTP- 95.8 0.012 3.9E-07 69.8 7.3 34 423-457 43-77 (608)
282 2iut_A DNA translocase FTSK; n 95.8 0.013 4.6E-07 68.3 7.6 74 487-573 345-420 (574)
283 2qm8_A GTPase/ATPase; G protei 95.7 0.0016 5.5E-08 71.5 -0.1 33 418-450 45-79 (337)
284 1lvg_A Guanylate kinase, GMP k 95.7 0.0036 1.2E-07 63.0 2.5 24 428-451 6-29 (198)
285 3sop_A Neuronal-specific septi 95.7 0.0031 1.1E-07 67.0 2.1 31 428-458 4-34 (270)
286 1e4v_A Adenylate kinase; trans 95.7 0.0035 1.2E-07 63.6 2.3 29 429-457 3-31 (214)
287 2qt1_A Nicotinamide riboside k 95.7 0.0049 1.7E-07 62.0 3.4 27 429-455 24-51 (207)
288 1nks_A Adenylate kinase; therm 95.7 0.0033 1.1E-07 61.8 2.1 23 429-451 4-26 (194)
289 1tf7_A KAIC; homohexamer, hexa 95.7 0.021 7E-07 66.4 9.1 27 424-450 277-305 (525)
290 4e22_A Cytidylate kinase; P-lo 95.7 0.0046 1.6E-07 64.7 3.3 28 428-455 29-56 (252)
291 2v54_A DTMP kinase, thymidylat 95.7 0.0073 2.5E-07 60.2 4.5 32 427-458 5-37 (204)
292 2obl_A ESCN; ATPase, hydrolase 95.7 0.0041 1.4E-07 68.5 2.9 40 418-458 62-103 (347)
293 2r6a_A DNAB helicase, replicat 95.7 0.0098 3.4E-07 67.8 6.0 38 422-459 199-240 (454)
294 2z0h_A DTMP kinase, thymidylat 95.6 0.0059 2E-07 60.4 3.5 29 429-457 3-34 (197)
295 2dpy_A FLII, flagellum-specifi 95.6 0.005 1.7E-07 70.0 3.4 42 417-459 147-190 (438)
296 2yhs_A FTSY, cell division pro 95.6 0.0052 1.8E-07 70.5 3.5 35 419-453 284-320 (503)
297 2o8b_B DNA mismatch repair pro 95.6 0.0081 2.8E-07 75.1 5.5 21 428-449 791-811 (1022)
298 3kl4_A SRP54, signal recogniti 95.6 0.02 6.7E-07 64.9 8.1 34 426-459 97-133 (433)
299 3crm_A TRNA delta(2)-isopenten 95.6 0.0057 2E-07 66.6 3.5 33 427-459 6-38 (323)
300 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0054 1.9E-07 64.4 3.2 32 428-459 6-40 (260)
301 2xb4_A Adenylate kinase; ATP-b 95.5 0.0058 2E-07 62.6 3.1 27 429-455 3-29 (223)
302 3dm5_A SRP54, signal recogniti 95.5 0.026 9E-07 64.0 8.7 69 426-494 100-191 (443)
303 2i3b_A HCR-ntpase, human cance 95.5 0.0048 1.6E-07 62.0 2.3 22 429-450 4-25 (189)
304 3ake_A Cytidylate kinase; CMP 95.5 0.0064 2.2E-07 60.7 3.2 30 428-457 4-33 (208)
305 2iw3_A Elongation factor 3A; a 95.4 0.0031 1.1E-07 78.0 0.8 45 416-460 687-733 (986)
306 2ius_A DNA translocase FTSK; n 95.4 0.019 6.4E-07 66.4 7.2 73 488-573 300-374 (512)
307 3ux8_A Excinuclease ABC, A sub 95.4 0.0085 2.9E-07 71.8 4.4 27 417-443 33-61 (670)
308 3r20_A Cytidylate kinase; stru 95.4 0.0081 2.8E-07 62.5 3.6 29 427-455 10-38 (233)
309 2a5y_B CED-4; apoptosis; HET: 95.3 0.025 8.7E-07 65.9 8.1 144 427-598 153-330 (549)
310 1ls1_A Signal recognition part 95.3 0.035 1.2E-06 59.6 8.5 45 404-450 78-122 (295)
311 1pui_A ENGB, probable GTP-bind 95.3 0.0055 1.9E-07 61.2 2.0 45 403-450 4-50 (210)
312 3aez_A Pantothenate kinase; tr 95.3 0.0062 2.1E-07 66.1 2.5 24 429-452 93-116 (312)
313 2grj_A Dephospho-COA kinase; T 95.3 0.007 2.4E-07 61.0 2.6 28 429-456 15-42 (192)
314 1vht_A Dephospho-COA kinase; s 95.2 0.0077 2.6E-07 61.1 2.8 28 428-456 6-33 (218)
315 2plr_A DTMP kinase, probable t 95.2 0.0069 2.4E-07 60.5 2.4 25 428-452 6-30 (213)
316 1uf9_A TT1252 protein; P-loop, 95.2 0.0072 2.5E-07 60.1 2.5 28 428-456 10-37 (203)
317 1uj2_A Uridine-cytidine kinase 95.2 0.012 4E-07 61.4 4.2 36 428-463 24-67 (252)
318 1cr0_A DNA primase/helicase; R 95.2 0.0057 1.9E-07 65.2 1.7 24 428-451 37-60 (296)
319 2wwf_A Thymidilate kinase, put 95.2 0.0054 1.8E-07 61.6 1.4 27 427-453 11-37 (212)
320 2qor_A Guanylate kinase; phosp 95.1 0.0074 2.5E-07 60.7 2.4 25 427-451 13-37 (204)
321 3foz_A TRNA delta(2)-isopenten 95.1 0.012 4.1E-07 63.7 4.0 34 426-459 10-43 (316)
322 3a8t_A Adenylate isopentenyltr 95.1 0.01 3.4E-07 65.0 3.3 32 428-459 42-73 (339)
323 1rj9_A FTSY, signal recognitio 95.0 0.0075 2.6E-07 65.2 2.1 28 428-455 104-131 (304)
324 1rz3_A Hypothetical protein rb 95.0 0.012 4.2E-07 59.0 3.6 23 428-450 24-46 (201)
325 1lw7_A Transcriptional regulat 95.0 0.0058 2E-07 67.5 1.2 27 428-454 172-198 (365)
326 2qag_B Septin-6, protein NEDD5 95.0 0.0074 2.5E-07 68.2 2.0 22 429-450 45-66 (427)
327 3cmw_A Protein RECA, recombina 95.0 0.016 5.5E-07 75.4 5.3 114 424-538 1427-1565(1706)
328 1q3t_A Cytidylate kinase; nucl 95.0 0.011 3.8E-07 60.9 3.2 29 428-456 18-46 (236)
329 1nn5_A Similar to deoxythymidy 95.0 0.0068 2.3E-07 60.8 1.5 27 427-453 10-36 (215)
330 2fz4_A DNA repair protein RAD2 94.9 0.032 1.1E-06 57.7 6.6 33 428-460 110-142 (237)
331 3ney_A 55 kDa erythrocyte memb 94.9 0.015 5.2E-07 58.8 3.8 24 428-451 21-44 (197)
332 3bh0_A DNAB-like replicative h 94.8 0.041 1.4E-06 59.5 7.3 38 422-459 64-104 (315)
333 1j8m_F SRP54, signal recogniti 94.8 0.064 2.2E-06 57.6 8.7 53 405-459 77-134 (297)
334 2q6t_A DNAB replication FORK h 94.8 0.028 9.5E-07 63.8 6.1 38 422-459 196-237 (444)
335 1f2t_A RAD50 ABC-ATPase; DNA d 94.8 0.012 4.2E-07 56.5 2.7 26 425-450 21-47 (149)
336 3d3q_A TRNA delta(2)-isopenten 94.7 0.013 4.6E-07 64.1 3.1 31 428-458 9-39 (340)
337 2f1r_A Molybdopterin-guanine d 94.7 0.0071 2.4E-07 59.8 0.7 33 428-460 4-39 (171)
338 2yvu_A Probable adenylyl-sulfa 94.6 0.012 4E-07 58.1 2.3 24 428-451 15-38 (186)
339 1m7g_A Adenylylsulfate kinase; 94.6 0.015 5.1E-07 58.8 2.9 32 428-459 27-62 (211)
340 3euj_A Chromosome partition pr 94.6 0.0097 3.3E-07 68.3 1.7 42 418-459 20-62 (483)
341 2h92_A Cytidylate kinase; ross 94.6 0.015 5.1E-07 58.8 2.9 29 428-456 5-33 (219)
342 1ex7_A Guanylate kinase; subst 94.5 0.018 6.1E-07 57.7 3.3 24 429-452 4-27 (186)
343 3e70_C DPA, signal recognition 94.5 0.01 3.5E-07 64.8 1.6 26 428-453 131-156 (328)
344 2ga8_A Hypothetical 39.9 kDa p 94.5 0.006 2.1E-07 67.2 -0.3 29 428-456 26-54 (359)
345 3tqc_A Pantothenate kinase; bi 94.5 0.02 7E-07 62.3 3.9 24 428-451 94-117 (321)
346 1u0l_A Probable GTPase ENGC; p 94.5 0.015 5.1E-07 62.6 2.7 32 428-459 171-202 (301)
347 3exa_A TRNA delta(2)-isopenten 94.4 0.018 6.1E-07 62.4 3.2 31 428-458 5-35 (322)
348 3qf7_A RAD50; ABC-ATPase, ATPa 94.4 0.013 4.6E-07 64.8 2.3 32 419-450 15-47 (365)
349 2f6r_A COA synthase, bifunctio 94.4 0.014 4.8E-07 62.1 2.2 28 428-456 77-104 (281)
350 1ltq_A Polynucleotide kinase; 94.3 0.014 4.9E-07 62.0 2.3 28 427-454 3-31 (301)
351 2qmh_A HPR kinase/phosphorylas 94.3 0.024 8.2E-07 57.5 3.6 31 427-458 35-65 (205)
352 1gtv_A TMK, thymidylate kinase 94.3 0.0087 3E-07 60.1 0.3 24 429-452 3-26 (214)
353 2rcn_A Probable GTPase ENGC; Y 94.3 0.016 5.3E-07 64.1 2.4 32 428-459 217-249 (358)
354 2vp4_A Deoxynucleoside kinase; 94.2 0.02 6.9E-07 58.8 2.9 21 429-449 23-43 (230)
355 1w36_D RECD, exodeoxyribonucle 94.2 0.038 1.3E-06 65.4 5.6 23 428-450 166-188 (608)
356 4aby_A DNA repair protein RECN 94.2 0.006 2.1E-07 68.2 -1.3 37 416-452 49-86 (415)
357 2f9l_A RAB11B, member RAS onco 94.1 0.019 6.5E-07 57.0 2.5 23 428-450 7-29 (199)
358 1w4r_A Thymidine kinase; type 94.1 0.065 2.2E-06 54.0 6.4 67 429-497 23-103 (195)
359 1tf7_A KAIC; homohexamer, hexa 94.1 0.012 4.2E-07 68.2 1.3 41 419-459 29-76 (525)
360 1tq4_A IIGP1, interferon-induc 94.1 0.013 4.5E-07 66.0 1.4 30 428-457 71-100 (413)
361 2ffh_A Protein (FFH); SRP54, s 94.1 0.11 3.7E-06 58.7 8.8 42 407-450 81-122 (425)
362 3llm_A ATP-dependent RNA helic 94.0 0.073 2.5E-06 54.6 6.8 21 427-447 77-97 (235)
363 1oix_A RAS-related protein RAB 94.0 0.019 6.4E-07 56.9 2.2 22 429-450 32-53 (191)
364 3zvl_A Bifunctional polynucleo 94.0 0.025 8.7E-07 63.7 3.5 29 427-455 259-287 (416)
365 2o5v_A DNA replication and rep 94.0 0.02 7E-07 63.2 2.7 33 418-450 17-50 (359)
366 2p67_A LAO/AO transport system 93.9 0.037 1.3E-06 60.6 4.5 22 429-450 59-80 (341)
367 4eaq_A DTMP kinase, thymidylat 93.9 0.023 8E-07 58.6 2.6 24 429-452 29-52 (229)
368 1a7j_A Phosphoribulokinase; tr 93.8 0.026 9E-07 60.4 3.1 35 428-462 7-44 (290)
369 2v3c_C SRP54, signal recogniti 93.8 0.066 2.3E-06 60.6 6.5 35 426-460 99-136 (432)
370 2qnr_A Septin-2, protein NEDD5 93.8 0.016 5.4E-07 62.4 1.2 21 429-449 21-41 (301)
371 2xau_A PRE-mRNA-splicing facto 93.8 0.047 1.6E-06 66.4 5.5 22 428-449 111-132 (773)
372 1odf_A YGR205W, hypothetical 3 93.6 0.029 9.8E-07 60.2 2.8 26 427-452 32-57 (290)
373 3qks_A DNA double-strand break 93.6 0.029 9.9E-07 56.7 2.7 26 426-451 22-48 (203)
374 3gmt_A Adenylate kinase; ssgci 93.6 0.026 9E-07 58.4 2.4 34 428-463 10-43 (230)
375 2yv5_A YJEQ protein; hydrolase 93.5 0.024 8.1E-07 61.1 2.0 31 428-459 167-197 (302)
376 2qag_C Septin-7; cell cycle, c 93.3 0.012 4E-07 66.5 -0.8 23 429-451 34-56 (418)
377 1t9h_A YLOQ, probable GTPase E 93.3 0.012 4.2E-07 63.6 -0.7 31 428-458 175-205 (307)
378 1nij_A Hypothetical protein YJ 93.3 0.025 8.7E-07 61.2 1.8 22 429-450 7-28 (318)
379 1xx6_A Thymidine kinase; NESG, 93.3 0.096 3.3E-06 52.6 5.9 69 429-498 11-94 (191)
380 3fdi_A Uncharacterized protein 93.2 0.037 1.3E-06 55.9 2.8 29 428-456 8-36 (201)
381 2wji_A Ferrous iron transport 93.1 0.036 1.2E-06 53.2 2.5 22 428-449 5-26 (165)
382 3qkt_A DNA double-strand break 93.1 0.032 1.1E-06 61.0 2.3 28 423-450 19-47 (339)
383 1np6_A Molybdopterin-guanine d 93.0 0.043 1.5E-06 54.3 2.8 24 427-450 7-30 (174)
384 2zej_A Dardarin, leucine-rich 93.0 0.039 1.3E-06 54.0 2.4 21 429-449 5-25 (184)
385 3eph_A TRNA isopentenyltransfe 92.9 0.044 1.5E-06 61.4 2.9 31 428-458 4-34 (409)
386 1qhl_A Protein (cell division 92.8 0.0092 3.1E-07 61.8 -2.5 27 429-455 30-56 (227)
387 2j37_W Signal recognition part 92.8 0.18 6.2E-06 58.1 8.0 34 426-459 101-137 (504)
388 1e69_A Chromosome segregation 92.8 0.041 1.4E-06 59.6 2.5 28 423-450 20-48 (322)
389 3bgw_A DNAB-like replicative h 92.7 0.12 4E-06 58.7 6.4 38 422-459 193-233 (444)
390 1c9k_A COBU, adenosylcobinamid 92.7 0.065 2.2E-06 53.4 3.6 32 429-461 2-33 (180)
391 2xxa_A Signal recognition part 92.6 0.23 7.9E-06 56.2 8.4 36 426-461 100-139 (433)
392 2wjg_A FEOB, ferrous iron tran 92.6 0.049 1.7E-06 52.9 2.5 22 428-449 9-30 (188)
393 3ux8_A Excinuclease ABC, A sub 92.5 0.027 9.4E-07 67.3 0.8 31 417-447 337-369 (670)
394 1xjc_A MOBB protein homolog; s 92.5 0.072 2.4E-06 52.5 3.7 31 428-458 6-39 (169)
395 1zu4_A FTSY; GTPase, signal re 92.4 0.07 2.4E-06 58.0 3.8 31 420-450 97-129 (320)
396 1f6b_A SAR1; gtpases, N-termin 92.4 0.049 1.7E-06 54.1 2.3 30 419-448 17-47 (198)
397 1p5z_B DCK, deoxycytidine kina 92.4 0.055 1.9E-06 56.6 2.8 24 428-451 26-49 (263)
398 1q57_A DNA primase/helicase; d 92.2 0.11 3.7E-06 59.8 5.2 39 422-460 238-280 (503)
399 3p32_A Probable GTPase RV1496/ 91.9 0.13 4.4E-06 56.5 5.2 23 428-450 81-103 (355)
400 2gj8_A MNME, tRNA modification 91.9 0.06 2.1E-06 52.2 2.3 21 429-449 7-27 (172)
401 2dyk_A GTP-binding protein; GT 91.9 0.067 2.3E-06 50.3 2.5 23 428-450 3-25 (161)
402 1x6v_B Bifunctional 3'-phospho 91.8 0.075 2.5E-06 62.9 3.3 33 428-460 54-89 (630)
403 3vkw_A Replicase large subunit 91.8 0.23 7.8E-06 56.2 7.1 21 429-449 164-184 (446)
404 1z2a_A RAS-related protein RAB 91.8 0.069 2.4E-06 50.5 2.5 22 428-449 7-28 (168)
405 1w1w_A Structural maintenance 91.8 0.075 2.6E-06 59.9 3.1 27 427-453 27-53 (430)
406 1ewq_A DNA mismatch repair pro 91.7 0.061 2.1E-06 65.2 2.5 33 417-450 568-600 (765)
407 1m2o_B GTP-binding protein SAR 91.7 0.063 2.2E-06 52.9 2.2 21 428-448 25-45 (190)
408 2nzj_A GTP-binding protein REM 91.7 0.071 2.4E-06 50.9 2.4 22 428-449 6-27 (175)
409 3cr8_A Sulfate adenylyltranfer 91.6 0.041 1.4E-06 64.2 0.7 25 428-452 371-395 (552)
410 1kao_A RAP2A; GTP-binding prot 91.5 0.076 2.6E-06 49.9 2.5 22 428-449 5-26 (167)
411 3q72_A GTP-binding protein RAD 91.5 0.067 2.3E-06 50.7 2.0 22 429-450 5-26 (166)
412 2ged_A SR-beta, signal recogni 91.4 0.077 2.6E-06 51.8 2.5 24 427-450 49-72 (193)
413 1ni3_A YCHF GTPase, YCHF GTP-b 91.4 0.11 3.8E-06 58.0 3.9 21 428-448 22-42 (392)
414 2ce2_X GTPase HRAS; signaling 91.4 0.074 2.5E-06 49.9 2.2 22 428-449 5-26 (166)
415 2axn_A 6-phosphofructo-2-kinas 91.4 0.082 2.8E-06 61.3 3.0 25 428-452 37-61 (520)
416 2erx_A GTP-binding protein DI- 91.4 0.082 2.8E-06 50.1 2.5 22 428-449 5-26 (172)
417 1u8z_A RAS-related protein RAL 91.4 0.082 2.8E-06 49.7 2.5 22 428-449 6-27 (168)
418 3auy_A DNA double-strand break 91.4 0.064 2.2E-06 59.3 2.0 30 419-448 17-47 (371)
419 3b6e_A Interferon-induced heli 91.3 0.13 4.5E-06 51.1 4.0 23 427-449 49-71 (216)
420 1z0j_A RAB-22, RAS-related pro 91.3 0.083 2.9E-06 50.0 2.5 23 428-450 8-30 (170)
421 3q85_A GTP-binding protein REM 91.3 0.083 2.9E-06 50.1 2.5 21 429-449 5-25 (169)
422 1ek0_A Protein (GTP-binding pr 91.3 0.085 2.9E-06 49.9 2.5 22 428-449 5-26 (170)
423 2lkc_A Translation initiation 91.2 0.11 3.6E-06 49.9 3.1 22 428-449 10-31 (178)
424 3hdt_A Putative kinase; struct 91.1 0.088 3E-06 54.2 2.6 29 428-456 16-44 (223)
425 1wms_A RAB-9, RAB9, RAS-relate 91.1 0.089 3E-06 50.4 2.5 22 428-449 9-30 (177)
426 3tw8_B RAS-related protein RAB 91.1 0.084 2.9E-06 50.5 2.3 22 428-449 11-32 (181)
427 1g16_A RAS-related protein SEC 91.1 0.084 2.9E-06 50.0 2.2 22 428-449 5-26 (170)
428 1z08_A RAS-related protein RAB 91.0 0.091 3.1E-06 49.8 2.5 22 428-449 8-29 (170)
429 1nrj_B SR-beta, signal recogni 91.0 0.091 3.1E-06 52.6 2.5 23 428-450 14-36 (218)
430 1ky3_A GTP-binding protein YPT 91.0 0.094 3.2E-06 50.3 2.5 22 428-449 10-31 (182)
431 1c1y_A RAS-related protein RAP 90.9 0.096 3.3E-06 49.4 2.5 22 428-449 5-26 (167)
432 1r2q_A RAS-related protein RAB 90.8 0.099 3.4E-06 49.4 2.5 21 428-448 8-28 (170)
433 3k53_A Ferrous iron transport 90.8 0.087 3E-06 55.4 2.2 23 428-450 5-27 (271)
434 2lw1_A ABC transporter ATP-bin 90.7 0.56 1.9E-05 41.0 7.0 57 224-280 22-81 (89)
435 2www_A Methylmalonic aciduria 90.7 0.094 3.2E-06 57.6 2.5 22 429-450 77-98 (349)
436 2ocp_A DGK, deoxyguanosine kin 90.7 0.12 4E-06 53.2 3.0 24 428-451 4-27 (241)
437 2hxs_A RAB-26, RAS-related pro 90.7 0.11 3.8E-06 49.7 2.7 22 428-449 8-29 (178)
438 3lxx_A GTPase IMAP family memb 90.6 0.1 3.4E-06 53.5 2.5 23 428-450 31-53 (239)
439 4i1u_A Dephospho-COA kinase; s 90.6 0.11 3.8E-06 53.0 2.8 30 428-458 11-40 (210)
440 3bc1_A RAS-related protein RAB 90.6 0.1 3.6E-06 50.4 2.5 22 428-449 13-34 (195)
441 2j9r_A Thymidine kinase; TK1, 90.6 0.3 1E-05 49.9 5.9 22 429-450 31-52 (214)
442 1r8s_A ADP-ribosylation factor 90.6 0.11 3.7E-06 49.0 2.5 21 429-449 3-23 (164)
443 3tqf_A HPR(Ser) kinase; transf 90.5 0.1 3.4E-06 51.7 2.2 23 427-449 17-39 (181)
444 1svi_A GTP-binding protein YSX 90.5 0.097 3.3E-06 51.1 2.2 23 427-449 24-46 (195)
445 4dsu_A GTPase KRAS, isoform 2B 90.5 0.11 3.7E-06 50.2 2.5 22 428-449 6-27 (189)
446 4b3f_X DNA-binding protein smu 90.5 0.23 8E-06 58.9 5.8 20 429-448 208-227 (646)
447 3clv_A RAB5 protein, putative; 90.5 0.11 3.7E-06 50.6 2.5 22 428-449 9-30 (208)
448 2oil_A CATX-8, RAS-related pro 90.4 0.11 3.8E-06 50.7 2.5 22 428-449 27-48 (193)
449 3pxg_A Negative regulator of g 90.4 0.24 8.2E-06 56.5 5.6 64 220-283 383-448 (468)
450 2fn4_A P23, RAS-related protei 90.4 0.1 3.5E-06 49.9 2.2 22 428-449 11-32 (181)
451 1upt_A ARL1, ADP-ribosylation 90.4 0.12 4E-06 49.1 2.5 22 428-449 9-30 (171)
452 1z0f_A RAB14, member RAS oncog 90.3 0.12 4E-06 49.4 2.5 22 428-449 17-38 (179)
453 2y8e_A RAB-protein 6, GH09086P 90.3 0.11 3.6E-06 49.7 2.2 22 428-449 16-37 (179)
454 2cxx_A Probable GTP-binding pr 90.3 0.1 3.5E-06 50.6 2.1 22 428-449 3-24 (190)
455 1fzq_A ADP-ribosylation factor 90.3 0.1 3.5E-06 50.9 2.0 22 428-449 18-39 (181)
456 3con_A GTPase NRAS; structural 90.2 0.12 4E-06 50.4 2.5 22 428-449 23-44 (190)
457 1udx_A The GTP-binding protein 90.2 0.099 3.4E-06 58.9 2.2 29 421-449 150-180 (416)
458 1sky_E F1-ATPase, F1-ATP synth 90.1 0.12 4.1E-06 58.9 2.7 23 428-450 153-175 (473)
459 3ice_A Transcription terminati 90.1 0.14 4.7E-06 57.1 3.0 28 423-450 169-198 (422)
460 2a9k_A RAS-related protein RAL 90.1 0.13 4.3E-06 49.6 2.5 22 428-449 20-41 (187)
461 3t1o_A Gliding protein MGLA; G 90.0 0.13 4.4E-06 50.0 2.6 23 428-450 16-38 (198)
462 2gxq_A Heat resistant RNA depe 90.0 0.59 2E-05 46.1 7.5 16 427-442 39-54 (207)
463 1moz_A ARL1, ADP-ribosylation 90.0 0.097 3.3E-06 50.5 1.6 22 427-448 19-40 (183)
464 3pqc_A Probable GTP-binding pr 90.0 0.11 3.9E-06 50.3 2.2 22 428-449 25-46 (195)
465 2efe_B Small GTP-binding prote 90.0 0.13 4.4E-06 49.4 2.5 22 428-449 14-35 (181)
466 1m7b_A RND3/RHOE small GTP-bin 89.9 0.12 4.1E-06 50.3 2.2 22 428-449 9-30 (184)
467 2g6b_A RAS-related protein RAB 89.8 0.13 4.6E-06 49.2 2.5 22 428-449 12-33 (180)
468 2bme_A RAB4A, RAS-related prot 89.8 0.12 4.2E-06 49.9 2.2 22 428-449 12-33 (186)
469 3cbq_A GTP-binding protein REM 89.8 0.13 4.3E-06 51.1 2.3 20 429-448 26-45 (195)
470 4edh_A DTMP kinase, thymidylat 89.8 0.13 4.3E-06 52.5 2.3 23 429-451 9-31 (213)
471 3v9p_A DTMP kinase, thymidylat 89.7 0.12 4.1E-06 53.4 2.1 23 429-451 28-50 (227)
472 1m8p_A Sulfate adenylyltransfe 89.7 0.15 5.2E-06 59.8 3.2 33 428-460 398-434 (573)
473 1ega_A Protein (GTP-binding pr 89.7 0.13 4.5E-06 55.1 2.5 21 429-449 11-31 (301)
474 1ksh_A ARF-like protein 2; sma 89.6 0.14 4.9E-06 49.5 2.5 24 427-450 19-42 (186)
475 3kkq_A RAS-related protein M-R 89.6 0.14 4.9E-06 49.3 2.5 22 428-449 20-41 (183)
476 2gf9_A RAS-related protein RAB 89.6 0.14 4.9E-06 49.9 2.5 22 428-449 24-45 (189)
477 1mh1_A RAC1; GTP-binding, GTPa 89.5 0.15 5E-06 49.1 2.5 22 428-449 7-28 (186)
478 2bov_A RAla, RAS-related prote 89.5 0.14 4.9E-06 50.2 2.5 22 428-449 16-37 (206)
479 1bif_A 6-phosphofructo-2-kinas 89.4 0.099 3.4E-06 59.7 1.3 25 428-452 41-65 (469)
480 3tkl_A RAS-related protein RAB 89.4 0.15 5.2E-06 49.7 2.5 22 428-449 18-39 (196)
481 1zbd_A Rabphilin-3A; G protein 89.4 0.15 5.2E-06 50.2 2.5 22 428-449 10-31 (203)
482 1vg8_A RAS-related protein RAB 89.4 0.15 5.1E-06 50.3 2.5 22 428-449 10-31 (207)
483 3ihw_A Centg3; RAS, centaurin, 89.3 0.15 5.2E-06 49.8 2.5 21 429-449 23-43 (184)
484 2wsm_A Hydrogenase expression/ 89.2 0.13 4.5E-06 51.6 2.0 23 428-450 32-54 (221)
485 4ag6_A VIRB4 ATPase, type IV s 89.1 0.24 8.3E-06 54.8 4.2 24 426-449 35-58 (392)
486 3bwd_D RAC-like GTP-binding pr 89.1 0.17 5.7E-06 48.7 2.5 22 428-449 10-31 (182)
487 2vf7_A UVRA2, excinuclease ABC 89.1 0.07 2.4E-06 65.2 -0.3 34 417-450 512-548 (842)
488 3dz8_A RAS-related protein RAB 89.0 0.15 5.2E-06 49.9 2.2 23 428-450 25-47 (191)
489 2fg5_A RAB-22B, RAS-related pr 89.0 0.15 5.1E-06 50.0 2.2 22 428-449 25-46 (192)
490 3iev_A GTP-binding protein ERA 89.0 0.16 5.5E-06 54.6 2.6 21 429-449 13-33 (308)
491 1x3s_A RAS-related protein RAB 89.0 0.17 5.7E-06 49.2 2.5 22 428-449 17-38 (195)
492 2atv_A RERG, RAS-like estrogen 89.0 0.17 5.7E-06 49.8 2.5 22 428-449 30-51 (196)
493 1zd9_A ADP-ribosylation factor 89.0 0.17 5.8E-06 49.4 2.5 21 429-449 25-45 (188)
494 3b1v_A Ferrous iron uptake tra 88.9 0.16 5.4E-06 53.8 2.4 22 428-449 5-26 (272)
495 2iwr_A Centaurin gamma 1; ANK 88.9 0.13 4.4E-06 49.5 1.5 22 428-449 9-30 (178)
496 2cjw_A GTP-binding protein GEM 88.9 0.17 5.8E-06 49.9 2.5 21 428-448 8-28 (192)
497 3c5c_A RAS-like protein 12; GD 88.9 0.17 5.8E-06 49.5 2.5 21 429-449 24-44 (187)
498 3tmk_A Thymidylate kinase; pho 88.9 0.21 7.1E-06 51.1 3.2 25 429-453 8-32 (216)
499 3reg_A RHO-like small GTPase; 88.9 0.17 5.9E-06 49.5 2.5 22 428-449 25-46 (194)
500 2a5j_A RAS-related protein RAB 88.8 0.17 6E-06 49.4 2.5 21 429-449 24-44 (191)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=8.9e-70 Score=625.07 Aligned_cols=428 Identities=45% Similarity=0.726 Sum_probs=370.9
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 466 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 466 (859)
.+.+.|+++.|.+..+..+.+++..+.++..+.++|+.+|+|++|+||||||||+|+++||++++.+++.++++++...|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCc
Q 003000 467 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 546 (859)
Q Consensus 467 ~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldp 546 (859)
+|.+...++.+|..+....|+||||||+|.+...++...+++......+++.|+..|+++....+++||++||.++.+||
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99888888999999999999999999999998765433334455666789999999998877788999999999999999
Q ss_pred cCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003000 547 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 626 (859)
Q Consensus 547 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl 626 (859)
+++||||||+.|.|++|+..+|.+|++.+++..++..++++..++..+.|++|+||.++|++|+..|.+++...|+.+||
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHcCcccccc--ccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCC-ccccceeccccccccccccCCH
Q 003000 627 LQAAQIEERGMLDRKE--RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAG-RELGYVRMKMDHMKFKEGMLSR 703 (859)
Q Consensus 627 ~~Al~~~~~g~~~~~~--~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g-~~lG~~~~~~~e~~~~~~~~tr 703 (859)
..|++++..+ +.++. .++.+++.+|+||+|||++++++++.+++++|||.|+ | .++||+++.|.+ +.+++||
T Consensus 250 ~~al~~v~~~-~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~pr-g~~alg~~~~~p~~---~~~~~~~ 324 (476)
T 2ce7_A 250 EEAIDRVIAG-PARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPR-GYKALGYTLHLPEE---DKYLVSR 324 (476)
T ss_dssp HHHHHHHC---------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC---------------------CCSCBH
T ss_pred HHHHHHHhcC-ccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecC-cccccceEEEcCcc---cccccCH
Confidence 9999999877 33332 3778889999999999999999999999999999999 6 899999999876 6788999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCc----CCCC-------------chhhh
Q 003000 704 QSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGLS-------------NFWVA 765 (859)
Q Consensus 704 ~~l~~~I~v~LAGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~----~g~~-------------~~~~~ 765 (859)
.+|+++|+++|||||||+++||+ +||||++|+++||.+|+.||+ ||||+.. |+.. ..|++
T Consensus 325 ~~l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~ 402 (476)
T 2ce7_A 325 NELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSE 402 (476)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCH
T ss_pred HHHHHHHHHHHhHHHHHhhhcCC--CCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccH
Confidence 99999999999999999999997 999999999999999999999 9999854 2211 23567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHHh
Q 003000 766 DRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVEL 821 (859)
Q Consensus 766 ~~~~~id~ev~~lL~~ay~rA~~IL~~nr~~L~~LA~~LLeketL~~~ei~~Il~~ 821 (859)
++...+|.+|+++|++||++|++||++||+.|++||++|+++|+|+++||.+|++.
T Consensus 403 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 403 EVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 78889999999999999999999999999999999999999999999999999964
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=4.1e-67 Score=606.19 Aligned_cols=427 Identities=44% Similarity=0.675 Sum_probs=387.7
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 467 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 467 (859)
+.+.|+++.|.+..+..+.+++..+.++..+.++|+.+|+|++|+||||||||+|+++||+.++.+++.++++++...++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCcc
Q 003000 468 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 547 (859)
Q Consensus 468 g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldpa 547 (859)
+.....++.+|+.+....|+++||||||.+...+....+.+.......++.|+..|+++.....+++|++||.|+.+|++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 88778888999998878899999999999876554322234456667899999999998887889999999999999999
Q ss_pred CCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003000 548 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 627 (859)
Q Consensus 548 LlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~ 627 (859)
++||||||+.|.|++|+..+|.+||+.+++..++.+++++..+|..+.|++|+||.++|++|+..|.+.+...|+.+||.
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Confidence 99999999999999999999999999999888888889999999999999999999999999999988888889999999
Q ss_pred HHHHHHHcCccccc--cccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCCccccceecccc-ccccccccCCHH
Q 003000 628 QAAQIEERGMLDRK--ERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMD-HMKFKEGMLSRQ 704 (859)
Q Consensus 628 ~Al~~~~~g~~~~~--~~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g~~lG~~~~~~~-e~~~~~~~~tr~ 704 (859)
.|++++..+ ..++ ..++.+++.+||||+||||+++++++.++|+++||.|+ |+++||++ |. + +.+++|+.
T Consensus 266 ~al~~v~~~-~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr-~~~~g~~~--p~q~---~~~~~t~~ 338 (499)
T 2dhr_A 266 EAADRVMML-PAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGFMM--PRRE---DMLHWSRK 338 (499)
T ss_dssp HHHHHHTTC-SSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCS-SCTTCSSH--HHHT---TCCCCCHH
T ss_pred HHHHHHhcc-cccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecC-CCcCcccc--cchh---hhhccCHH
Confidence 999999887 3333 33778889999999999999999999999999999999 88999998 44 3 56788999
Q ss_pred HHHHHHHHhhhhHHHHHHHhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCc----CCC----------CchhhhhhHH
Q 003000 705 SLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGL----------SNFWVADRIN 769 (859)
Q Consensus 705 ~l~~~I~v~LAGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~----~g~----------~~~~~~~~~~ 769 (859)
+|+++|+++|||||||+++||+ +|||+++|+++||.+|+.||+ |||++.. |+. ...|++++..
T Consensus 339 ~l~~~i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~ 416 (499)
T 2dhr_A 339 RLLDQIAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAK 416 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHH
T ss_pred HHHHHHHHHhhhHhHHHhhhcc--cCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHH
Confidence 9999999999999999999996 999999999999999999999 9999864 221 1245777889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHHhcC
Q 003000 770 EIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHG 823 (859)
Q Consensus 770 ~id~ev~~lL~~ay~rA~~IL~~nr~~L~~LA~~LLeketL~~~ei~~Il~~~~ 823 (859)
.||.+|+++|++||++|++||++|++.|++||++|+++|+|+++||.+|++...
T Consensus 417 ~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~ 470 (499)
T 2dhr_A 417 RIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLP 470 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999998653
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-44 Score=401.16 Aligned_cols=252 Identities=38% Similarity=0.660 Sum_probs=239.1
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
.+.++++|++++|++.++..+.+++.. +.++..|..+|+.+|+|+||+||||||||+||+++|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 356789999999999999999998887 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..|+|.+...++.+|..++..+||||||||+|.+++.+....+++......+++.||..||++....+|+||+|||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 99999999999999999999999999999999999887665555666777899999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
|||||+||||||+.|+||+|+.++|.+||+.|+++.++..++|+..||..|+||||+||.++|++|+..|.++++..|+.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~ 379 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQ 379 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCH
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003000 624 DDLLQAAQIEERG 636 (859)
Q Consensus 624 edl~~Al~~~~~g 636 (859)
+||..|++++...
T Consensus 380 ~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 380 EDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc
Confidence 9999999988654
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-43 Score=391.59 Aligned_cols=252 Identities=38% Similarity=0.669 Sum_probs=239.3
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
...++++|++++|+++++..+.+.+.. +.++..|..+|+..|+|+|||||||||||+||++||++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 456889999999999999999998886 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..|+|.+...++.+|..++..+||||||||+|.++..|.....++......+++.||..||++....+|+||+|||+|+.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 99999999999999999999999999999999999888766656666777899999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
|||||+||||||+.|+|++|+.++|.+||+.|+++.++..++|+..||..|+||||+||.++|++|+..|.++++..|+.
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~ 413 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTA 413 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCH
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003000 624 DDLLQAAQIEERG 636 (859)
Q Consensus 624 edl~~Al~~~~~g 636 (859)
+||..|++++..+
T Consensus 414 eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 414 EDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988654
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-42 Score=392.82 Aligned_cols=251 Identities=37% Similarity=0.615 Sum_probs=238.7
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..++++|++++|++.++..+.+++.. +.++..|..+|+.+|+|+||+||||||||+||++||++++.+|+.++++++..
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 56789999999999999999998876 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
.|+|.+...++.+|..++..+||||||||+|.++..|.....++......+++.||..||++....+|+||+|||+|+.|
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 99999999999999999999999999999999998876655555667778899999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~e 624 (859)
||+|+||||||+.|+|++|+.++|.+||+.++++.++..++|+..||..|+||||+||.++|++|+..|.++++..|+.+
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~ 441 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEK 441 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 003000 625 DLLQAAQIEERG 636 (859)
Q Consensus 625 dl~~Al~~~~~g 636 (859)
||..|++++..|
T Consensus 442 Df~~Al~kV~~g 453 (467)
T 4b4t_H 442 DFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998876
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-42 Score=391.19 Aligned_cols=252 Identities=40% Similarity=0.680 Sum_probs=238.6
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
...++++|++++|++..+..+.+++.. +.++..|..+|+.+|+|+|||||||||||+||++||++++.+|+.++++++.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 356889999999999999999998887 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..|+|.+...++.+|..++...||||||||+|.++..|...+.+++.....+++.||..||++....+|+||+|||+|+.
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 99999999999999999999999999999999999887665556666777889999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
|||+|+||||||+.|+||+|+.++|.+||+.|+++.+...++|+..+|..|+||||+||.++|++|+..|.++++..|+.
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~ 412 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINP 412 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003000 624 DDLLQAAQIEERG 636 (859)
Q Consensus 624 edl~~Al~~~~~g 636 (859)
+||..|++++...
T Consensus 413 ~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 413 DDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-42 Score=391.03 Aligned_cols=251 Identities=39% Similarity=0.657 Sum_probs=236.5
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
...+.++|++++|++.++..+.+.+.. +.++..|.++|+..|+|+|||||||||||+||++||++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 456889999999999999999887665 7889999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..|+|.+...++.+|..++..+||||||||+|.++..|.....++......+++.||..||++....+|+||+|||+|+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999888765556666777889999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
|||+|+||||||+.|+||+|+.++|.+||+.++++.++..++|+..||..|+||||+||.++|++|+..|.++++..|+.
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~ 412 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKH 412 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 003000 624 DDLLQAAQIEER 635 (859)
Q Consensus 624 edl~~Al~~~~~ 635 (859)
+||..|+..+..
T Consensus 413 ~Df~~Al~~v~~ 424 (434)
T 4b4t_M 413 EDFVEGISEVQA 424 (434)
T ss_dssp HHHHHHHHSCSS
T ss_pred HHHHHHHHHHhC
Confidence 999999987644
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=383.60 Aligned_cols=251 Identities=37% Similarity=0.603 Sum_probs=236.6
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
...++++|++++|++.++..+.+.+.. +.++..|..+|+..|+|+||+||||||||+||++||++++.+|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 456789999999999999999998875 7889999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..|+|.+...++.+|..++..+|||+||||+|.++..+.....+++.....+++.||.+||++....+|+||+|||+|+.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999888665556666777899999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCC-CCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003000 544 LDPALVRPGRFDRKIFIP-KPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 622 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~-~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It 622 (859)
|||+|+||||||+.|+|| +|+..+|..||+.++++.++..++|+..+|..|+||||+||.++|++|+..|.++++..|+
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~ 403 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVIL 403 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 999999999999999997 8999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 003000 623 TDDLLQAAQIEER 635 (859)
Q Consensus 623 ~edl~~Al~~~~~ 635 (859)
.+||..|+..+..
T Consensus 404 ~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 404 QSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999987643
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2.7e-40 Score=345.09 Aligned_cols=178 Identities=30% Similarity=0.401 Sum_probs=149.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHhCCCCCCceEEEecCCCCccccceeccccccccccccCCHHHHHHHHHHhhhhHHHHHH
Q 003000 643 RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADEL 722 (859)
Q Consensus 643 ~~~e~~~~vA~hEAGHAvva~ll~~~~~i~~VTI~pr~g~~lG~~~~~~~e~~~~~~~~tr~~l~~~I~v~LAGRAAEel 722 (859)
.++++++++||||||||||++++++.+||++|||+|| |+++|||.+.|.+ +++++||.+|+++|+|+|||||||++
T Consensus 11 ~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPR-G~alG~t~~~P~e---d~~~~tk~~l~~~i~v~LgGRaAEel 86 (238)
T 2di4_A 11 ISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIE---DKHIYDKKDLYNKILVLLGGRAAEEV 86 (238)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC--------------------CCCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeec-CCcceEEEeCCcc---cccccCHHHHHHHHHHHHhHHHHHHH
Confidence 4899999999999999999999999999999999999 8899999999876 67899999999999999999999999
Q ss_pred HhCCCCcccchhhHHHHHHHHHHHHHH-hCCCCCc----CC-----------CCchhhhhhHHHHHHHHHHHHHHHHHHH
Q 003000 723 WCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FG-----------LSNFWVADRINEIDTEALRILNLCYERA 786 (859)
Q Consensus 723 ~fG~~~~stga~~Dl~~At~iA~~mV~-~Gm~~~~----~g-----------~~~~~~~~~~~~id~ev~~lL~~ay~rA 786 (859)
+||.+++||||++|+++||.+|+.||+ ||||+.. |+ ....|++.+...||.+|+++|+.||++|
T Consensus 87 ifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~~ay~~a 166 (238)
T 2di4_A 87 FFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKA 166 (238)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 996656999999999999999999999 9999853 22 1235677888999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHHhcCC
Q 003000 787 KEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHGS 824 (859)
Q Consensus 787 ~~IL~~nr~~L~~LA~~LLeketL~~~ei~~Il~~~~~ 824 (859)
++||++||+.|++||++||+++||+++||.+|++.++.
T Consensus 167 ~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~ 204 (238)
T 2di4_A 167 KAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGI 204 (238)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCC
Confidence 99999999999999999999999999999999988743
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.4e-37 Score=371.95 Aligned_cols=231 Identities=41% Similarity=0.746 Sum_probs=183.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+.+.|+++.|+++++..+.+++.. +.++..|.++|...|+|+||+||||||||++|++||++++.+|+.+++++++.
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 34678899999999999999988876 57888999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
.|+|.++..++.+|+.|+...||||||||||.+++.|+...++++...+.++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999998876544455556667999999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
||+++||||||+.|+||+|+.++|.+||+.++++.++..++|+..||..|+||||+||.++|++|+..|.++
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-34 Score=347.90 Aligned_cols=247 Identities=40% Similarity=0.673 Sum_probs=227.4
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+.+.|++++|+++.+..+++++.. +.++..|..+|..+|+||||+||||||||+||++||++++.+++.++++++..
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34678999999999999999998876 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
.|+|.....++.+|+.++...||||||||||.+++.+.. ++++..+.++++|+..|+++..+.+|+||++||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~---~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTT---CCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCC---CCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 999999999999999999999999999999999887643 34556677999999999999888999999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-------
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------- 617 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~------- 617 (859)
||+|+||||||+.|+|+.|+..+|.+||+.++++..+..++|+..+|..|.||+|+||.++|++|+..|.++.
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999988899999999999999999999999999999887752
Q ss_pred ----------CCccCHHHHHHHHHHHHc
Q 003000 618 ----------RTEITTDDLLQAAQIEER 635 (859)
Q Consensus 618 ----------~~~It~edl~~Al~~~~~ 635 (859)
...|+.+||..|+..+..
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCC
Confidence 124788999999876544
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=7.1e-32 Score=286.29 Aligned_cols=251 Identities=49% Similarity=0.839 Sum_probs=222.4
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 465 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 465 (859)
..+...|+++.|++..+..+.+++..+..+..+..+|...|.|++|+||||||||+++++|++.++.+++.++++++...
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 45678899999999999999999888888888889999999999999999999999999999999999999999999888
Q ss_pred hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCC
Q 003000 466 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 545 (859)
Q Consensus 466 ~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ld 545 (859)
+.+.....++.+|+.+....|+++||||+|.+...+......+.......++.++..++++....+++||++||.++.+|
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 88888888899999998888999999999999876543222334445568899999999888788899999999999999
Q ss_pred ccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 003000 546 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 625 (859)
Q Consensus 546 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ed 625 (859)
++++|+|||++.+.|++|+.++|.+|++.++...++..+.++..++..+.||+++||.++|+.|...|..++...|+.+|
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~ 244 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 244 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHH
Confidence 99999999999999999999999999999998888888888999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHcC
Q 003000 626 LLQAAQIEERG 636 (859)
Q Consensus 626 l~~Al~~~~~g 636 (859)
+..|+..+..|
T Consensus 245 ~~~a~~~~~~~ 255 (257)
T 1lv7_A 245 FEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcC
Confidence 99999988766
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.98 E-value=2.1e-32 Score=294.50 Aligned_cols=246 Identities=38% Similarity=0.645 Sum_probs=203.3
Q ss_pred CccccccCccCchHHHHHHHHHH-HhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIV-KFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 465 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v-~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 465 (859)
.+.+.|++++|++.++..+.+.+ ..+.++..+.++++.+++|++|+||||||||||+++||+.++..++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 35788999999999999998754 45788899999999999999999999999999999999999999999999998888
Q ss_pred hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCC
Q 003000 466 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 545 (859)
Q Consensus 466 ~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ld 545 (859)
|.+.....++.+|+.+....|+++++||+|.+...+... ........++.++..|++......++++++||.|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 888777888999999988899999999999986543221 11112246789999999988888899999999999999
Q ss_pred ccCCCCCcccccccCCCCCHHHHHHHHHHHHcc---CCCCCcccHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHh----
Q 003000 546 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARK---KPMADDVDYLAVASMT--DGMVGAELANIVEVAAINMMRD---- 616 (859)
Q Consensus 546 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~---~~~~~d~dl~~lA~~t--~G~sgadL~~Lv~~A~~~A~~~---- 616 (859)
++++||||||+.|+|++|+.++|.+||+.+++. .+...++++..+|..+ +||||+||.++|++|+..|.++
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 3455789999999875 4999999999999999988764
Q ss_pred -------CCCccCHHHHHHHHHHHHc
Q 003000 617 -------GRTEITTDDLLQAAQIEER 635 (859)
Q Consensus 617 -------~~~~It~edl~~Al~~~~~ 635 (859)
+...|+.+||..|+..+..
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcC
Confidence 2336999999999876543
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=2.3e-31 Score=289.85 Aligned_cols=248 Identities=40% Similarity=0.716 Sum_probs=218.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+.+.|+++.|++.++..+.+.+.. +..+..|..+|+..+.+++|+||||||||+||++||+.++.+++.++++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 35678899999999999999988875 66788888899999999999999999999999999999999999999999998
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
.|+|.....++.+|+.+....|+++||||+|.+...++.....++.....+++.|+..|+++....+++||++||.++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99998888899999999999999999999999987664433333334455788999999988777899999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-------
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------- 617 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~------- 617 (859)
|++++|+|||+..|+|++|+.++|.+|++.+++..++..++++..++..+.||+|+||.++|++|+..|.++.
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999998887788999999999999999999999999998876542
Q ss_pred ------------------CCccCHHHHHHHHHHH
Q 003000 618 ------------------RTEITTDDLLQAAQIE 633 (859)
Q Consensus 618 ------------------~~~It~edl~~Al~~~ 633 (859)
...|+.+||..|+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTC
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 1358888998888654
No 15
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=6e-31 Score=278.67 Aligned_cols=247 Identities=55% Similarity=0.895 Sum_probs=214.9
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
....+...|+++.|++..+..+++++..+.++..+.++++.++.|++|+||||||||||+++|++.++.+++.+++..+.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34557789999999999999999999998888889999999999999999999999999999999999999999988877
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 543 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~ 543 (859)
..+.+.....+..+|+.+....|+++++||+|.+...+....+.........++.++..|++......++++++||.|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 76776666777889999887789999999999987654321112334556678899999998877777889999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 623 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ 623 (859)
+|++++|+|||++.|+|+.|+.++|.+|++.+++...+..++++..++..+.|++++||.++|++|...|.+.+...|+.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~ 246 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 246 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCH
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999888888999
Q ss_pred HHHHHHH
Q 003000 624 DDLLQAA 630 (859)
Q Consensus 624 edl~~Al 630 (859)
+|+.+|+
T Consensus 247 ~dl~~a~ 253 (254)
T 1ixz_A 247 KDLEEAA 253 (254)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=4.2e-30 Score=276.13 Aligned_cols=251 Identities=46% Similarity=0.762 Sum_probs=226.4
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+...|+++.|.+..+..+.+.+.. +..+..+..+|+..+.+++|+||||||||+|++++|+.++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 44678899999999999999887765 66778888899999999999999999999999999999999999999999988
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
.+.|.....+..+|..+....|+|+||||+|.+...+.....++.......+..++..++++....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 88888888889999999999999999999999987655433344556667888889888888777899999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~e 624 (859)
|+++++++||+..+.|++|+.++|.+|++.++.......+.++..++..+.|+++++|..+|+.|...|..++...|+.+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~ 249 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMD 249 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 003000 625 DLLQAAQIEERG 636 (859)
Q Consensus 625 dl~~Al~~~~~g 636 (859)
|+..|+..+...
T Consensus 250 d~~~al~~~~~~ 261 (285)
T 3h4m_A 250 DFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999987643
No 17
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=1.8e-29 Score=271.42 Aligned_cols=245 Identities=56% Similarity=0.897 Sum_probs=213.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 465 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 465 (859)
..+...|+++.|.+..+..+.+++..+..+..+..+++.++.|++|+||||||||||+++|++.++.+++.+++..+...
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 34678899999999999999999999988888999999999999999999999999999999999999999998887776
Q ss_pred hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCC
Q 003000 466 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 545 (859)
Q Consensus 466 ~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ld 545 (859)
+.+.....+..+|+.+....|+++++||++.+...+....+.........++.++..+++......++++++||.|+.+|
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld 192 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCC
Confidence 66666667788999988788999999999998755432111223445667889999999877767788899999999999
Q ss_pred ccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 003000 546 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 625 (859)
Q Consensus 546 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ed 625 (859)
++++|++||++.|+|++|+.++|.+|++.+++...+..++++..++..+.|++++||.++|+.|...|...+...|+.+|
T Consensus 193 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~d 272 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272 (278)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHH
T ss_pred HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence 99999999999999999999999999999998888788889999999999999999999999999999888888899999
Q ss_pred HHHHH
Q 003000 626 LLQAA 630 (859)
Q Consensus 626 l~~Al 630 (859)
+.+|+
T Consensus 273 l~~a~ 277 (278)
T 1iy2_A 273 LEEAA 277 (278)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=272.10 Aligned_cols=248 Identities=45% Similarity=0.718 Sum_probs=197.2
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhc
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVG 468 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g 468 (859)
.+.|+++.|++..+..+.+++..+..+..+...|...+++++|+||||||||++|+++|++++.+++.++++.+...+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 56899999999999999999988888888888999999999999999999999999999999999999999998888877
Q ss_pred ccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCC-CCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCcc
Q 003000 469 VGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG-SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 547 (859)
Q Consensus 469 ~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~-sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldpa 547 (859)
.....+..+|+.+....|++|||||+|.+...+..... .........++.|+..+++.....+++||++||.++.+|++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 77777888999999888999999999999765432111 11223345788899889887777889999999999999999
Q ss_pred CCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCccc--HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 003000 548 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD--YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 625 (859)
Q Consensus 548 LlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d--l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~ed 625 (859)
++++|||+..++|++|+.++|.+|++.++...+...+.+ +..++..+.|+++++|.++++.|...|.+++...|+.+|
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d 241 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCC
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 999999999999999999999999999998876654433 478999999999999999999999999988888999999
Q ss_pred HHHHHHHHHcC
Q 003000 626 LLQAAQIEERG 636 (859)
Q Consensus 626 l~~Al~~~~~g 636 (859)
+..|+..+..+
T Consensus 242 ~~~a~~~~~~~ 252 (262)
T 2qz4_A 242 FEYAVERVLAG 252 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccC
Confidence 99999988766
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=271.46 Aligned_cols=225 Identities=35% Similarity=0.578 Sum_probs=196.2
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc-cccEEEeeccccc
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GVNFFSISASQFV 463 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el-~~~~~~is~s~~~ 463 (859)
..+.+.|+++.|++.++..+.+.+.. +..+..+.. +...++|++|+||||||||+||+++|+++ +.+++.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 34678999999999999999987764 555666553 35566899999999999999999999999 8999999999999
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-CCCCeEEEeccCCCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRPD 542 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-~~~~vlVIatTN~~~ 542 (859)
..|+|.....++.+|+.++...|+||||||+|.+...+.. ...+..+.+++.|+..++++. ...+++||++||.++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS---CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc---ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 9999999889999999999999999999999999876543 223445668899999999875 357899999999999
Q ss_pred CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 543 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 543 ~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
.+|++++| ||+..|++++|+.++|..|++.++...+.. .+.++..|+..|.||||+||.++|++|...|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999877653 6788999999999999999999999999888765
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=4.2e-29 Score=274.51 Aligned_cols=229 Identities=35% Similarity=0.616 Sum_probs=195.8
Q ss_pred cccccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 382 QYLERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 382 ~~~~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
......+.+.|+++.|+..++..+.+++.. +..+..+.. +...+.++||+||||||||+||+++|++++.+++.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 344566788999999999999999887764 344444444 556678999999999999999999999999999999999
Q ss_pred ccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-CCCCeEEEeccC
Q 003000 461 QFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTN 539 (859)
Q Consensus 461 ~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-~~~~vlVIatTN 539 (859)
++...|+|.....++.+|..++...|+||||||+|.+...+.. +.....+.+.+.|+..++++. ...+++||++||
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC---CcchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 9999999999899999999999999999999999999765432 222334557888999998874 557899999999
Q ss_pred CCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 540 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 540 ~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
.++.||++++| ||+..|+|++|+.++|..|++.++...+.. .+.++..++..+.||+++||.++|++|...|.++
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999887654 6778999999999999999999999999888775
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=7.5e-30 Score=271.99 Aligned_cols=247 Identities=51% Similarity=0.839 Sum_probs=211.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 466 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 466 (859)
.+...|+++.|.+..+..+.+++..+..+..+..++...+.|++|+||||||||+||++||+.++.+++.++++.+...+
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45678999999999999999998888888888999999999999999999999999999999999999999999988888
Q ss_pred hcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcC-CCCchhHHHHHHHHHHhhccccC-CCCeEEEeccCCCCCC
Q 003000 467 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK-GSGGQERDATLNQLLVCLDGFEG-RGNVITIASTNRPDIL 544 (859)
Q Consensus 467 ~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~-~sgge~~r~~l~~LL~~ld~~~~-~~~vlVIatTN~~~~L 544 (859)
.|.....++.+|+.+....|+++||||+|.+...+.... .++.......++.|+..+++... ..+++||+|||.++.+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 888877788899999988999999999999976542111 11122222356778888887654 3458999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~e 624 (859)
|++++++|||+..|+|++|+.++|.+|++.++....+..++++..++..+.||+|+||.++|+.|...|...+...|+.+
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~ 244 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQ 244 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHH
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHH
Confidence 99999999999999999999999999999999888777788889999999999999999999999999887777889999
Q ss_pred HHHHHHHHH
Q 003000 625 DLLQAAQIE 633 (859)
Q Consensus 625 dl~~Al~~~ 633 (859)
|+..|+..+
T Consensus 245 ~~~~a~~~~ 253 (268)
T 2r62_A 245 HLKEAVERG 253 (268)
T ss_dssp HHHTSCTTC
T ss_pred HHHHHHHHH
Confidence 999887644
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=4.1e-28 Score=280.77 Aligned_cols=244 Identities=41% Similarity=0.690 Sum_probs=219.2
Q ss_pred ccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 466 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 466 (859)
....|+++.|+...+..+.+.+.. +..+..+..+|...+.++||+||||||||++|++|+..++.+++.++++++...|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 346788899999999999888775 5678889999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCc
Q 003000 467 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 546 (859)
Q Consensus 467 ~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ldp 546 (859)
+|.....++.+|+.+....|++|||||||.+...+. ...++....+++.|+..|++.....+++||+|||.++.+|+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~---~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE---KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTT---SCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccc---cccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 998888889999999999999999999999987643 23455667789999999998888889999999999999999
Q ss_pred cCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC-------
Q 003000 547 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT------- 619 (859)
Q Consensus 547 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~------- 619 (859)
+++++|||+..|+|++|+.++|.+||+.++...++..+.++..++..+.||+++||.+||++|...|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999888888899999999999999999999999999999887543
Q ss_pred ----------ccCHHHHHHHHHHHH
Q 003000 620 ----------EITTDDLLQAAQIEE 634 (859)
Q Consensus 620 ----------~It~edl~~Al~~~~ 634 (859)
.|+.+||..|+..+.
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ 460 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSN 460 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHH
T ss_pred ccchhhcccCcCCHHHHHHHHHhCC
Confidence 378888888876543
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=4.2e-28 Score=270.32 Aligned_cols=225 Identities=36% Similarity=0.622 Sum_probs=187.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+.+.|+++.|+..++..+.+.+.. +..+..+.. +...++++||+||||||||+||++||.+++.+++.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 34678899999999999999887754 455556654 5567788999999999999999999999999999999999988
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccC-CCCeEEEeccCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG-RGNVITIASTNRPDI 543 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~-~~~vlVIatTN~~~~ 543 (859)
.|+|.....++.+|..++...|+||||||+|.+...+.. ......+.+++.|+..|+++.. ..+++||++||.++.
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~---~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC---CcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 899988888899999999999999999999999766432 2234455678889999987754 568999999999999
Q ss_pred CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 544 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 544 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
+|++++| ||+..++|++|+.++|..||+.++...+.. .+.++..|+..|.||+|+||.++|++|+..|.++
T Consensus 200 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 200 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp SCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999877643 6788999999999999999999999999998875
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=1.4e-27 Score=273.73 Aligned_cols=226 Identities=35% Similarity=0.573 Sum_probs=186.4
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc-cccEEEeecccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GVNFFSISASQF 462 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el-~~~~~~is~s~~ 462 (859)
...+.+.|+++.|++.++..+.+++.. +..+..|.. +...++++||+||||||||+||++||.++ +.+++.++++++
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 345678999999999999999887754 444555542 34566899999999999999999999999 899999999999
Q ss_pred chhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-CCCCeEEEeccCCC
Q 003000 463 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRP 541 (859)
Q Consensus 463 ~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-~~~~vlVIatTN~~ 541 (859)
...|+|.....++.+|..++...|+||||||||.+.+.+.. ......+.+++.|+..|+++. ...+++||+|||.+
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~ 281 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 281 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSC---CCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCC---ccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCc
Confidence 99999988888999999999999999999999999766532 223445668899999999875 35789999999999
Q ss_pred CCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 542 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 542 ~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
+.+|++++| ||+..|++++|+.++|..||+.++...+.. .+.++..|+..|.||+|+||.++|++|...|.++
T Consensus 282 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 282 WVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999877643 6788999999999999999999999999888764
No 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=2.5e-29 Score=307.36 Aligned_cols=232 Identities=41% Similarity=0.743 Sum_probs=199.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+.+.|+++.|+..++..+.+++.. +..+..+..+++..+.+++|+||||||||+|+++||+.++.+++.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 45678899999999999888877664 45566777888888889999999999999999999999999999999999999
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 544 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~L 544 (859)
.|+|.....++.+|+.++...|+|+||||||.+...++...+..+.....+++.||..|+++....+++||+|||+++.|
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999987764332233445677899999999999888899999999999999
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG 617 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~ 617 (859)
||+++|||||+..|+|++|+.++|..||+.++++.++..++++..++..+.|||++||.++|++|...|.++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888888999999999999999999999999999998764
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=1.9e-25 Score=241.42 Aligned_cols=242 Identities=33% Similarity=0.540 Sum_probs=197.6
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
...+...|+++.|.+..+..+.+.+.. ...+..+..++ ..+.+++|+||||||||++|+++|+.++.+++.++++.+.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345678899999999999888877654 33455554443 3467899999999999999999999999999999999988
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCC---CCeEEEeccCC
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR---GNVITIASTNR 540 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~---~~vlVIatTN~ 540 (859)
..+.+.....++.+|..+....|+++||||+|.+...+... ..+......+.|+..+++.... .+++||++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 88888877778889999999999999999999997654321 1222345677888888876543 57999999999
Q ss_pred CCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCC-CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC--
Q 003000 541 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-- 617 (859)
Q Consensus 541 ~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~-- 617 (859)
++.+++++++ ||+..+++++|+.++|..|++.++...+. ..+.++..++..+.|+++++|.++|+.|...+.++.
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 99999999999999999999999877544 245678899999999999999999999998888764
Q ss_pred ----------CCccCHHHHHHHHHH
Q 003000 618 ----------RTEITTDDLLQAAQI 632 (859)
Q Consensus 618 ----------~~~It~edl~~Al~~ 632 (859)
...|+.+||..|+..
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTS
T ss_pred hhcccccccccCCcCHHHHHHHHHH
Confidence 246999999998754
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.2e-25 Score=246.23 Aligned_cols=245 Identities=30% Similarity=0.518 Sum_probs=202.3
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
..+...|+++.|....+..+.+.+.. +..+..+...+ ..+.+++|+||||||||+||++||..++.+++.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34577899999999999998887764 44555554443 56788999999999999999999999999999999999988
Q ss_pred hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccC--CCCeEEEeccCCCC
Q 003000 465 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNRPD 542 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~--~~~vlVIatTN~~~ 542 (859)
.|.|.....++.+|..+....|+||||||+|.+...+.. ........+++.|+..+++... ..+++||++||.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 888888888889999999899999999999999765421 2234455678889999887643 46799999999999
Q ss_pred CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC----
Q 003000 543 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG---- 617 (859)
Q Consensus 543 ~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~---- 617 (859)
.+++++++ ||+..++++.|+.++|..|+..++...... .+.++..++..+.||+++||..+|+.|...+.++-
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999998765432 45678899999999999999999999998887742
Q ss_pred --------CCccCHHHHHHHHHHHHcC
Q 003000 618 --------RTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 618 --------~~~It~edl~~Al~~~~~g 636 (859)
...|+.+||..|+..+...
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCCC
Confidence 3579999999999887543
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=244.67 Aligned_cols=244 Identities=33% Similarity=0.544 Sum_probs=193.0
Q ss_pred cccCccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeecccc
Q 003000 384 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 462 (859)
Q Consensus 384 ~~~~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~ 462 (859)
........|+++.|...++..+.+++.. ...+..+..++ ..+.++||+||||||||+||++||..++.+++.++++.+
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 3445677899999999999888877654 33444444444 346789999999999999999999999999999999999
Q ss_pred chhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccC--CCCeEEEeccCC
Q 003000 463 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNR 540 (859)
Q Consensus 463 ~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~--~~~vlVIatTN~ 540 (859)
...|.|.....+..+|..+....|+||||||||.+...+.. ........+++.|+..++++.. ..+++||++||.
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 99999988888899999999999999999999999765422 2233345677888888887654 467999999999
Q ss_pred CCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh---
Q 003000 541 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD--- 616 (859)
Q Consensus 541 ~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~--- 616 (859)
++.+|+++++ ||+..|+|+.|+.++|..|++.++...... .+.++..++..+.|+++++|..|++.|...+.++
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~ 339 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKP 339 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCC
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999 999999999999999999999998765432 4557889999999999999999999999888886
Q ss_pred ---------CCCccCHHHHHHHHHHH
Q 003000 617 ---------GRTEITTDDLLQAAQIE 633 (859)
Q Consensus 617 ---------~~~~It~edl~~Al~~~ 633 (859)
....|+.+||..++..+
T Consensus 340 ~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 340 EQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp C---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhhccchhhcCCcCHHHHHHHHHHc
Confidence 33579999999998754
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=2.2e-26 Score=249.81 Aligned_cols=228 Identities=19% Similarity=0.194 Sum_probs=159.1
Q ss_pred ccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHH----HhcCCcEEEhhhhH
Q 003000 420 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA----KDNAPSVVFIDELD 495 (859)
Q Consensus 420 ~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a----~~~~p~Il~iDEId 495 (859)
..+...|.|++|+||||||||+||++||+.++.+++.++++++...|+|.....++.+|..+ +...|+|+||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34677889999999999999999999999999999999999999999998888888899888 57789999999999
Q ss_pred hhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCC
Q 003000 496 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPG 564 (859)
Q Consensus 496 ~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd 564 (859)
.+++.+.. ...+....+.+.+.|+..||+.. ...+++||+|||.++.+|++++|+|||+..|++ |+
T Consensus 110 ~~~~~~~~-~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~ 186 (293)
T 3t15_A 110 AGAGRMGG-TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 186 (293)
T ss_dssp ---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CC
T ss_pred hhcCCCCC-CccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cC
Confidence 99874321 11222234456788888887432 456899999999999999999999999999874 69
Q ss_pred HHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHH-------HHHHHHH-HHhCCCccCHHHHHHHHHHHHcC
Q 003000 565 LIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIV-------EVAAINM-MRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 565 ~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv-------~~A~~~A-~~~~~~~It~edl~~Al~~~~~g 636 (859)
.++|.+|++.++... +++...++..+.||++++|..+. ..+.... ...|-..+.. . +..+
T Consensus 187 ~~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~~~-----~---~~~~ 254 (293)
T 3t15_A 187 REDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGD-----K---LLNS 254 (293)
T ss_dssp HHHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTCHH-----H---HTSC
T ss_pred HHHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-----H---HHcC
Confidence 999999999888643 56788899999999999885321 1111111 1111111111 1 1112
Q ss_pred ccccccccchhhhHHHHHHHHHHHHH
Q 003000 637 MLDRKERSSETWRQVAINEAAMAVVA 662 (859)
Q Consensus 637 ~~~~~~~~~e~~~~vA~hEAGHAvva 662 (859)
....+..........++||+||+++.
T Consensus 255 ~~~~~~~~~~~~~~~~l~~~g~~~~~ 280 (293)
T 3t15_A 255 FDGPPTFEQPKMTIEKLLEYGNMLVQ 280 (293)
T ss_dssp SSCSCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHH
Confidence 11122234557788999999999985
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=6e-23 Score=251.12 Aligned_cols=244 Identities=41% Similarity=0.683 Sum_probs=216.4
Q ss_pred CccccccCccCchHHHHHHHHHHHh-cccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 465 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 465 (859)
...+.|+++.|++..+..+.+.+.. +.++..|..+++..+.+++|+||||||||||+++||+.++.+++.+++.++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4568899999999999999988876 778889999999999999999999999999999999999999999999998888
Q ss_pred hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCC
Q 003000 466 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 545 (859)
Q Consensus 466 ~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~Ld 545 (859)
+.+.....++.+|+.+....|+++|+||++.+...+. ...++..+.++..|+..+++.....++++|++||.++.+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~---~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE---KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTS---CCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccc---cccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 8888888899999999999999999999999987643 2334555678889999999988888999999999999999
Q ss_pred ccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC------
Q 003000 546 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT------ 619 (859)
Q Consensus 546 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~------ 619 (859)
+++.++|||+..+.++.|+.++|.+|++.++....+..+.++..++..+.|++++++..++++|...+.++...
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99999999999999999999999999999999888888889999999999999999999999998887765332
Q ss_pred -----------ccCHHHHHHHHHHH
Q 003000 620 -----------EITTDDLLQAAQIE 633 (859)
Q Consensus 620 -----------~It~edl~~Al~~~ 633 (859)
.++.+++..++...
T Consensus 435 ~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 435 ETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred hccchhhhhhhhhhhhhhhcccccc
Confidence 35666777776654
No 31
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.88 E-value=5.1e-23 Score=253.88 Aligned_cols=354 Identities=20% Similarity=0.246 Sum_probs=255.6
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 003000 218 LKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEI-----RLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLG 292 (859)
Q Consensus 218 ~~~~~~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~~~-----rl~~l~~el~~~~~~~~~l~~~w~~ek~~~~~i~~l~ 292 (859)
.-...+....+.|.+++.+++++.+++.|.+.+.++.+ |+.+++++++.+++++..+..+|+.|+..+..+..+
T Consensus 388 a~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 466 (854)
T 1qvr_A 388 AAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREA- 466 (854)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34445667789999999999999999999999887642 999999999999999999999999999999999888
Q ss_pred cceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhchhhhHHHH
Q 003000 293 IVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARV 372 (859)
Q Consensus 293 ~~~~l~~YkGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~i~~~v 372 (859)
+...+......+.+++..+.+++.+..+..++.+++++...+.. ..........++...+...+
T Consensus 467 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~l~~~v 530 (854)
T 1qvr_A 467 --------QHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK--------LRGARFVRLEVTEEDIAEIV 530 (854)
T ss_dssp --------HHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH--------SSSCSSCCSEECHHHHHHHH
T ss_pred --------HHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh--------hcccccccCCcCHHHHHHHH
Confidence 87777777777766666677777777888888888887654310 11112233456777889999
Q ss_pred HHHhcCCCCcccccCcc-------ccccCccCchHHHHHHHHHHHhcccchhhhccCCcc---C-ceEEEECCCCCCchh
Q 003000 373 RRAYGKGLPQYLERGVD-------VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---P-GGILLCGPPGVGKTL 441 (859)
Q Consensus 373 s~~tgip~~~~~~~~~~-------~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~---~-~gvLL~GPpGtGKTt 441 (859)
++|+++|+......+.. ..+..+.|....+..+...+... ..|+.. | .+++|+||||||||+
T Consensus 531 ~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~-------~~g~~~~~~p~~~vLl~Gp~GtGKT~ 603 (854)
T 1qvr_A 531 SRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA-------RAGLKDPNRPIGSFLFLGPTGVGKTE 603 (854)
T ss_dssp HTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH-------GGGCSCSSSCSEEEEEBSCSSSSHHH
T ss_pred HHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH-------hcccCCCCCCceEEEEECCCCCCHHH
Confidence 99999876655333221 12244567777766666555432 222222 2 359999999999999
Q ss_pred HHHhhhhcc---cccEEEeeccccchh------------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCC
Q 003000 442 LAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 506 (859)
Q Consensus 442 LakaLA~el---~~~~~~is~s~~~~~------------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~ 506 (859)
+|++|+..+ +.+++.++|+++... |+|... .+.++..++..++++|||||++.+...
T Consensus 604 lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~~------ 675 (854)
T 1qvr_A 604 LAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHPD------ 675 (854)
T ss_dssp HHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSCHH------
T ss_pred HHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCHH------
Confidence 999999988 789999999987653 222222 134666667777899999999988654
Q ss_pred CCchhHHHHHHHHHHhhcccc---------CCCCeEEEeccCCC--------------------------CCCCccCCCC
Q 003000 507 SGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP--------------------------DILDPALVRP 551 (859)
Q Consensus 507 sgge~~r~~l~~LL~~ld~~~---------~~~~vlVIatTN~~--------------------------~~LdpaLlrp 551 (859)
+++.|++.|+... +..+++||+|||.. ..+.|+|++
T Consensus 676 --------~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~- 746 (854)
T 1qvr_A 676 --------VFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN- 746 (854)
T ss_dssp --------HHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred --------HHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH-
Confidence 8889998888532 23478899999972 246788887
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHccC-------CCC---CcccHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 003000 552 GRFDRKIFIPKPGLIGRMEILKVHARKK-------PMA---DDVDYLAVASMTD--GMVGAELANIVEVAAINM 613 (859)
Q Consensus 552 gRfd~~I~~~~Pd~~eR~~Il~~~l~~~-------~~~---~d~dl~~lA~~t~--G~sgadL~~Lv~~A~~~A 613 (859)
||+.++.|++|+.+++..|+..++... ... ++.-+..|+...- .+..++|.++++.+...+
T Consensus 747 -Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 747 -RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp -TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred -hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999877532 111 1222445555443 456777888777765443
No 32
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.78 E-value=2.2e-19 Score=218.80 Aligned_cols=288 Identities=18% Similarity=0.232 Sum_probs=186.7
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccceeeeec
Q 003000 223 KEELEKMREESEMMEKAMDMQKKEEERRRKKEI--RLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFY 300 (859)
Q Consensus 223 ~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~~~--rl~~l~~el~~~~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Y 300 (859)
+....+.|.+++.+++++.+++.|.+.+.+..+ +..+++.++.++++++..+...|..++..
T Consensus 386 ~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~---------------- 449 (758)
T 3pxi_A 386 RLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ---------------- 449 (758)
T ss_dssp HHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHC----------------
T ss_pred HhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------
Confidence 445566788888888888888888776665544 66666666666666666665555544320
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCchhHHhhchhhhHHHHHHHhcCCC
Q 003000 301 RTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGL 380 (859)
Q Consensus 301 kGnye~y~~~ke~ae~~~~~e~a~~~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~i~~~vs~~tgip~ 380 (859)
....++...+...++.|+++|+
T Consensus 450 ----------------------------------------------------------~~~~v~~~~i~~~v~~~~~ip~ 471 (758)
T 3pxi_A 450 ----------------------------------------------------------ENSEVTVDDIAMVVSSWTGVPV 471 (758)
T ss_dssp ----------------------------------------------------------C---CCTHHHHHHHHTTC----
T ss_pred ----------------------------------------------------------cCcccCHHHHHHHHHHHhCCCh
Confidence 1122444566667777777776
Q ss_pred CcccccCcc-------ccccCccCchHHHHHHHHHHHhcccchhhhccCCc---cCc-eEEEECCCCCCchhHHHhhhhc
Q 003000 381 PQYLERGVD-------VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVR---IPG-GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 381 ~~~~~~~~~-------~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~---~~~-gvLL~GPpGtGKTtLakaLA~e 449 (859)
......+.. .....+.|....+..+...+.... .+.. .|. +++|+||||||||++|++||..
T Consensus 472 ~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 472 SKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRAR-------AGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp ---CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHT-------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHH-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 554332211 112446677777766666555321 2222 233 5999999999999999999998
Q ss_pred c---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc
Q 003000 450 A---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF 526 (859)
Q Consensus 450 l---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~ 526 (859)
+ +.++++++++++...+... ...++..++..+++|+|||||+.+... +++.|++.|+..
T Consensus 545 l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~--------------~~~~Ll~~le~g 606 (758)
T 3pxi_A 545 IFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAHPD--------------VFNILLQVLEDG 606 (758)
T ss_dssp HHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSCHH--------------HHHHHHHHHHHS
T ss_pred hcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccCHH--------------HHHHHHHHhccC
Confidence 7 6789999999988776544 233566667778899999999998654 788888888752
Q ss_pred c---------CCCCeEEEeccCCCCC------------CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC------
Q 003000 527 E---------GRGNVITIASTNRPDI------------LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK------ 579 (859)
Q Consensus 527 ~---------~~~~vlVIatTN~~~~------------LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~------ 579 (859)
. ...+++||+|||.+.. ++|+|++ ||+.+|.|++|+.+++..|+..++...
T Consensus 607 ~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~ 684 (758)
T 3pxi_A 607 RLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKE 684 (758)
T ss_dssp BCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2 3457899999997654 7889988 999999999999999999999877542
Q ss_pred -CCC---CcccHHHHHh--hCCCCCHHHHHHHHHHHHH
Q 003000 580 -PMA---DDVDYLAVAS--MTDGMVGAELANIVEVAAI 611 (859)
Q Consensus 580 -~~~---~d~dl~~lA~--~t~G~sgadL~~Lv~~A~~ 611 (859)
... ++.-+..|+. ....+..++|.++++.+..
T Consensus 685 ~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 685 QDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVE 722 (758)
T ss_dssp TTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTH
T ss_pred CCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Confidence 111 1222444544 3344566777777776543
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=4.3e-21 Score=220.68 Aligned_cols=204 Identities=19% Similarity=0.220 Sum_probs=139.4
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccc--ccEEEeeccccchh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG--VNFFSISASQFVEI 465 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~--~~~~~is~s~~~~~ 465 (859)
+...|+++.|....+..+..++..+. .+...++++||+||||||||++|+++|+.++ .+++.++++++...
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~-------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIK-------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHH-------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 45668999999999888887776543 2445668899999999999999999999998 99999999999999
Q ss_pred hhcccchhhhhHHHHH---HhcCCcEEEhhhhHhhhhccCCcCCCCc-hhH---------------HHHHHHHHHhhc--
Q 003000 466 YVGVGASRVRSLYQEA---KDNAPSVVFIDELDAVGRERGLIKGSGG-QER---------------DATLNQLLVCLD-- 524 (859)
Q Consensus 466 ~~g~~~~~l~~lfe~a---~~~~p~Il~iDEId~l~~~r~~~~~sgg-e~~---------------r~~l~~LL~~ld-- 524 (859)
|+|.... +..+|..+ +...|+|+||||+|.+++.+.....++. ... ..+.+.++..++
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9988776 88899988 7788999999999999877643221110 000 012233555554
Q ss_pred cccCCCCeEEEeccCCCCCCCccCCCCCcccc--cccCCCCC--HHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHH
Q 003000 525 GFEGRGNVITIASTNRPDILDPALVRPGRFDR--KIFIPKPG--LIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGA 600 (859)
Q Consensus 525 ~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~--~I~~~~Pd--~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sga 600 (859)
+......++|++|||.++.+|++++|+||||+ .+++|.|+ ..+|.+|++.+.. .|+..++..+.| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 22333335555999999999999999999999 66777774 4678877764432 268889999999 99
Q ss_pred HHHHHHHH
Q 003000 601 ELANIVEV 608 (859)
Q Consensus 601 dL~~Lv~~ 608 (859)
||.++|..
T Consensus 255 dl~~l~~~ 262 (456)
T 2c9o_A 255 DILSMMGQ 262 (456)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 99999865
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=1.9e-18 Score=187.30 Aligned_cols=222 Identities=18% Similarity=0.234 Sum_probs=164.0
Q ss_pred CccCchHHHHHHHHHHHhcccchhhhccCCccC---ceEEEECCCCCCchhHHHhhhhccc-------ccEEEeeccccc
Q 003000 394 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP---GGILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFV 463 (859)
Q Consensus 394 ~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~---~gvLL~GPpGtGKTtLakaLA~el~-------~~~~~is~s~~~ 463 (859)
++.|++..+..+.+++..+..+..+...|+..+ .+++|+||||||||++|+++|..++ .+++.++++.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 578999999999988876555555666666544 3499999999999999999999873 389999999998
Q ss_pred hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC-
Q 003000 464 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD- 542 (859)
Q Consensus 464 ~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~- 542 (859)
..++|.....+..+|..+ .++++||||+|.+...+. +.......++.|+..++. ...+++||++||...
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~-----~~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMEN--NRDDLVVILAGYADRM 181 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHH
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCC-----cccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHH
Confidence 888888777777777765 467999999999864321 112234577888888884 456788999998754
Q ss_pred ----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHhh-------CCCCCHHHHHHHHHHHH
Q 003000 543 ----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASM-------TDGMVGAELANIVEVAA 610 (859)
Q Consensus 543 ----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl~~lA~~-------t~G~sgadL~~Lv~~A~ 610 (859)
.++|+|++ ||+.+|.|++|+.+++..|++.++......-+ ..+..++.. .....++++.++++.|.
T Consensus 182 ~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 182 ENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 35799998 99999999999999999999999987654322 223444444 22345899999999988
Q ss_pred HHHHHh----CCCccCHHHHH
Q 003000 611 INMMRD----GRTEITTDDLL 627 (859)
Q Consensus 611 ~~A~~~----~~~~It~edl~ 627 (859)
..+..+ ....++.+++.
T Consensus 260 ~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 260 LRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHh
Confidence 755443 33455655554
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.74 E-value=5.9e-18 Score=187.94 Aligned_cols=220 Identities=19% Similarity=0.244 Sum_probs=160.0
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc--cEEEeeccccchh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEI 465 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~--~~~~is~s~~~~~ 465 (859)
+...|+++.|....+..+..+...+.. +...+++++|+||||||||++|++++..++. +++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 344588899988887776666654432 2233568999999999999999999998864 7777776653322
Q ss_pred hhc-------------------------------------------------ccchhhhhHHHHHHh---------cCCc
Q 003000 466 YVG-------------------------------------------------VGASRVRSLYQEAKD---------NAPS 487 (859)
Q Consensus 466 ~~g-------------------------------------------------~~~~~l~~lfe~a~~---------~~p~ 487 (859)
+++ .....++..+..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 211 112233444443322 1267
Q ss_pred EEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc-----------CCCCCCCccCCCCCcccc
Q 003000 488 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST-----------NRPDILDPALVRPGRFDR 556 (859)
Q Consensus 488 Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT-----------N~~~~LdpaLlrpgRfd~ 556 (859)
|+||||++.+... .++.|+..++.. ...++++++. |.+..++++|++ ||..
T Consensus 192 vl~IDEi~~l~~~--------------~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHMLDIE--------------SFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp EEEEESGGGSBHH--------------HHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred eEEEhhccccChH--------------HHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 9999999988643 667777777643 2345544443 457789999999 8876
Q ss_pred cccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003000 557 KIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 557 ~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~ 633 (859)
|.|++|+.+++..|++.++...... ++..+..++..+.|.+++++.++++.|...|...+...|+.+++..++...
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 7999999999999999888764433 334467788888867899999999999999999999999999999998753
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.72 E-value=4.6e-18 Score=199.52 Aligned_cols=243 Identities=22% Similarity=0.261 Sum_probs=150.1
Q ss_pred HHHHHHHhcCCCCcccccC------ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccC-ceEEEECCCCCCchh
Q 003000 369 GARVRRAYGKGLPQYLERG------VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP-GGILLCGPPGVGKTL 441 (859)
Q Consensus 369 ~~~vs~~tgip~~~~~~~~------~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~-~gvLL~GPpGtGKTt 441 (859)
...+..++.+|........ ......++.|+.+++..+.+.+. ...++...+ ..++|+|||||||||
T Consensus 51 ~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~-------l~~~~~~~~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 51 RNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLA-------VQKLTKSLKGPILCLAGPPGVGKTS 123 (543)
T ss_dssp HHHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHH-------HHHHSSSCCSCEEEEESSSSSSHHH
T ss_pred HHHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHH-------HHHhcccCCCCEEEEECCCCCCHHH
Confidence 3444555666654433221 12223446677666655544332 233333333 359999999999999
Q ss_pred HHHhhhhcccccEEEeeccccch---------hhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhH
Q 003000 442 LAKAVAGEAGVNFFSISASQFVE---------IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQER 512 (859)
Q Consensus 442 LakaLA~el~~~~~~is~s~~~~---------~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~ 512 (859)
|+++||+.++.+++.++++.... .|+|.....+...|..+....| ++||||+|.+...+.
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~---------- 192 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR---------- 192 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------
T ss_pred HHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------
Confidence 99999999999999999877543 3566666666667776655656 999999999875421
Q ss_pred HHHHHHHHHhhccccC-------------CCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHc--
Q 003000 513 DATLNQLLVCLDGFEG-------------RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR-- 577 (859)
Q Consensus 513 r~~l~~LL~~ld~~~~-------------~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~-- 577 (859)
....+.|+..|+.... ..+++||+|||.++.++|+|++ ||+ +|.|+.|+.+++..|++.++.
T Consensus 193 ~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~ 269 (543)
T 3m6a_A 193 GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPK 269 (543)
T ss_dssp -----CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHH
T ss_pred cCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHH
Confidence 1145667777764321 1578999999999999999999 996 799999999999999998762
Q ss_pred ---cCCCC------CcccHHHHHhhCCC-CCHHHHHHHHHHHHHH----HHHh--CCCccCHHHHHHHHHH
Q 003000 578 ---KKPMA------DDVDYLAVASMTDG-MVGAELANIVEVAAIN----MMRD--GRTEITTDDLLQAAQI 632 (859)
Q Consensus 578 ---~~~~~------~d~dl~~lA~~t~G-~sgadL~~Lv~~A~~~----A~~~--~~~~It~edl~~Al~~ 632 (859)
...+. ++..+..++....+ ...++|.+.+..++.. +... +...|+.+++..++..
T Consensus 270 ~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 270 QIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred HHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 22221 12224444443332 3445555555444443 3333 3447999999998753
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.70 E-value=2.8e-16 Score=172.63 Aligned_cols=214 Identities=18% Similarity=0.188 Sum_probs=162.5
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 467 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 467 (859)
....|+++.|....+..+...+...... ...+.+++|+||||||||++|++++..++.+++.++++.+..
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 93 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--- 93 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc---
Confidence 3457889999999888887776644211 123456999999999999999999999999999999875421
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc----------------CCCC
Q 003000 468 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGN 531 (859)
Q Consensus 468 g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~----------------~~~~ 531 (859)
...+...+.. ...++++|||||+.+... .++.|+..++... ...+
T Consensus 94 ---~~~~~~~~~~--~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 94 ---SGDLAAILTN--LSEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ---HHHHHHHHHT--CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ---hhHHHHHHHh--ccCCCEEEEechhhcCHH--------------HHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 1222223322 246789999999988543 5666666665432 1124
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 003000 532 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAA 610 (859)
Q Consensus 532 vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~ 610 (859)
+++|++||....++++|++ ||+.++.|++|+.+++..|+..++...... ++..+..++..+.| .++.+.++++.+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 8999999999999999998 999999999999999999999988776543 23345667775554 6788889999998
Q ss_pred HHHHHhCCCccCHHHHHHHHHHH
Q 003000 611 INMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 611 ~~A~~~~~~~It~edl~~Al~~~ 633 (859)
..+...+...|+.+++..++...
T Consensus 232 ~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 232 DFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHhhcCCccCHHHHHHHHHHh
Confidence 88888888889999999988764
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.65 E-value=4.8e-16 Score=167.67 Aligned_cols=235 Identities=23% Similarity=0.310 Sum_probs=154.7
Q ss_pred CccCchHHHHHHHHHHHh-cccchhhhcc-CCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch-hhhccc
Q 003000 394 DVAGLGKIRLELEEIVKF-FTHGEMYRRR-GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVG 470 (859)
Q Consensus 394 ~~~gl~~~v~~l~~~v~~-~~~~~~~~~~-gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~-~~~g~~ 470 (859)
.+.|.+..+..+...+.. +......... +...+.+++|+||||||||+++++++..++.+++.++++.+.. .|+|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 467888888777665543 1111111000 1124567999999999999999999999999999999998765 455543
Q ss_pred c-hhhhhHHHHH----H-hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc--------CCCCeEEEe
Q 003000 471 A-SRVRSLYQEA----K-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------GRGNVITIA 536 (859)
Q Consensus 471 ~-~~l~~lfe~a----~-~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--------~~~~vlVIa 536 (859)
. ..+..++..+ . ...++|+||||+|.+...... .........+.+.|+..+++.. ...+++||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 2 2234444422 1 123679999999999765321 1122222234677777777531 235788888
Q ss_pred c----cCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHH-----------HHccCCC---CCcccHHHHHhhC----
Q 003000 537 S----TNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV-----------HARKKPM---ADDVDYLAVASMT---- 594 (859)
Q Consensus 537 t----TN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~-----------~l~~~~~---~~d~dl~~lA~~t---- 594 (859)
+ ++.+..++|+|++ ||+..|.|++|+.+++..|++. .+..... .++..+..++..+
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 8 5677889999998 9998899999999999999983 1111221 1233355566555
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHh-----CCC-ccCHHHHHHHHHH
Q 003000 595 ---DGMVGAELANIVEVAAINMMRD-----GRT-EITTDDLLQAAQI 632 (859)
Q Consensus 595 ---~G~sgadL~~Lv~~A~~~A~~~-----~~~-~It~edl~~Al~~ 632 (859)
.+...+.+.++++.+...+... +.. .|+.+++..++..
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 2567888999999876543322 222 4999999988753
No 39
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.65 E-value=1.5e-15 Score=165.37 Aligned_cols=212 Identities=20% Similarity=0.245 Sum_probs=157.1
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhc
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVG 468 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g 468 (859)
...|++..|....+..+...+...... -..+.+++|+||+|||||++|++++..++.+++.++++.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~---- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK---- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS----
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC----
Confidence 446888889888887777766543211 123456999999999999999999999999999888776422
Q ss_pred ccchhhhhHHHHHHh--cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc----------------CCC
Q 003000 469 VGASRVRSLYQEAKD--NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRG 530 (859)
Q Consensus 469 ~~~~~l~~lfe~a~~--~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~----------------~~~ 530 (859)
...++..... ..++++||||++.+... ....|+..++... ...
T Consensus 77 -----~~~l~~~l~~~~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 -----PGDLAAILANSLEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -----HHHHHHHHTTTCCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -----hHHHHHHHHHhccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1223333333 45789999999987543 3445555554321 113
Q ss_pred CeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 003000 531 NVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVA 609 (859)
Q Consensus 531 ~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A 609 (859)
++++|++||.+..++++|.+ ||+.++.|++|+.+++..++..++...+.. ++..+..++..+.| .++.+.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 68899999999999999988 998899999999999999999988765443 23346778888865 568888999988
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHH
Q 003000 610 AINMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 610 ~~~A~~~~~~~It~edl~~Al~~~ 633 (859)
...+...+...|+.+++..++...
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh
Confidence 776666666789999999887654
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.63 E-value=1.2e-15 Score=162.94 Aligned_cols=193 Identities=22% Similarity=0.318 Sum_probs=133.4
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhccc----chhhhhHHHHHHhcCCcEEEhhhhHhh
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG----ASRVRSLYQEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~----~~~l~~lfe~a~~~~p~Il~iDEId~l 497 (859)
+...+.+++|+||||||||++|+++|..++.+++.+++++. ++|.. ...++.+|+.+....+++|||||+|.+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 34556789999999999999999999999999999987652 23322 234577888887778899999999998
Q ss_pred hhccCCcCCCCchhHHHHHHHHHHhhcccc-CCCCeEEEeccCCCCCCCc-cCCCCCcccccccCCCCCH-HHHHHHHHH
Q 003000 498 GRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRPDILDP-ALVRPGRFDRKIFIPKPGL-IGRMEILKV 574 (859)
Q Consensus 498 ~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-~~~~vlVIatTN~~~~Ldp-aLlrpgRfd~~I~~~~Pd~-~eR~~Il~~ 574 (859)
...+. .+.......+..|...++... ...+++||+|||.++.+++ .+.+ ||+..|.+|+++. ++...++..
T Consensus 137 ~~~~~----~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 137 LDYVP----IGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TTCBT----TTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred hccCC----CChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 65432 112223345666666666543 3456889999999998888 5555 9999999877665 344444433
Q ss_pred HHccCCCCCcccHHHHHhhCCCC----CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003000 575 HARKKPMADDVDYLAVASMTDGM----VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 575 ~l~~~~~~~d~dl~~lA~~t~G~----sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~ 632 (859)
...+ .+.++..++..+.|+ ..+++.++++.|... ......+++..++..
T Consensus 211 ---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~-----~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 211 ---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM-----DPEYRVRKFLALLRE 263 (272)
T ss_dssp ---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS-----CGGGHHHHHHHHHHH
T ss_pred ---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh-----chHHHHHHHHHHHHH
Confidence 3333 455688899999887 567777777665422 233555666666543
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.62 E-value=2e-16 Score=179.85 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=75.9
Q ss_pred cCccCchHHHHHHHHHHHh-cccchhhhccCCc-cCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch-hhhcc
Q 003000 393 SDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVR-IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGV 469 (859)
Q Consensus 393 ~~~~gl~~~v~~l~~~v~~-~~~~~~~~~~gl~-~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~-~~~g~ 469 (859)
..+.|++.++..+..++.. +.....+..++.. .+++++|+||||||||+++++||+.++.+++.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 3578899998888766643 3333333333333 3567999999999999999999999999999999999888 48885
Q ss_pred -cchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEec-cCCCCCCCcc
Q 003000 470 -GASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS-TNRPDILDPA 547 (859)
Q Consensus 470 -~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIat-TN~~~~Ldpa 547 (859)
....++.+|+.+... +++||++.+... ..+...+.+++.|+..||++....++ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~------~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR------AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc------chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 567778889888764 458998876432 12233456899999999998766554 444 9999999999
Q ss_pred CCCCCcccccccCCCCCHH-HHHHHHHH
Q 003000 548 LVRPGRFDRKIFIPKPGLI-GRMEILKV 574 (859)
Q Consensus 548 LlrpgRfd~~I~~~~Pd~~-eR~~Il~~ 574 (859)
|+||||||+.|+|+.|+.. .|.+||..
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ----------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 9999999999999999987 78888753
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.62 E-value=1.7e-15 Score=168.65 Aligned_cols=220 Identities=25% Similarity=0.300 Sum_probs=144.2
Q ss_pred ccCchHHHHHHHHHHHhcccchhh--hccCC-ccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh-hhccc
Q 003000 395 VAGLGKIRLELEEIVKFFTHGEMY--RRRGV-RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVG 470 (859)
Q Consensus 395 ~~gl~~~v~~l~~~v~~~~~~~~~--~~~gl-~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~-~~g~~ 470 (859)
+.|.+.++..+..++......... ...+. ..+.+++|+||||||||++|++||..++.+++.++++.+... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 567888887777666421111000 00111 234579999999999999999999999999999999987754 77665
Q ss_pred -chhhhhHHHHH----HhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc------------------
Q 003000 471 -ASRVRSLYQEA----KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------------------ 527 (859)
Q Consensus 471 -~~~l~~lfe~a----~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~------------------ 527 (859)
...+..+|..+ ....++|+||||+|.+...+.....+.......+++.|+..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 34445566554 3445789999999999876543332333334458889999888421
Q ss_pred -CCCCeEEEeccCCC----------CC-----------------------------------CCccCCCCCcccccccCC
Q 003000 528 -GRGNVITIASTNRP----------DI-----------------------------------LDPALVRPGRFDRKIFIP 561 (859)
Q Consensus 528 -~~~~vlVIatTN~~----------~~-----------------------------------LdpaLlrpgRfd~~I~~~ 561 (859)
...|+++|+++|.. .. ++|+|++ ||+.++.|+
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 22344555554432 11 6788887 999999999
Q ss_pred CCCHHHHHHHHHH----HH-------ccCCCC---CcccHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHh
Q 003000 562 KPGLIGRMEILKV----HA-------RKKPMA---DDVDYLAVAS--MTDGMVGAELANIVEVAAINMMRD 616 (859)
Q Consensus 562 ~Pd~~eR~~Il~~----~l-------~~~~~~---~d~dl~~lA~--~t~G~sgadL~~Lv~~A~~~A~~~ 616 (859)
+|+.+++.+|+.. .+ ...... .+.-+..|+. ....+..++|.++++.+...+..+
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 9999999999885 22 111221 2222445553 334455788999999888776654
No 43
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.62 E-value=2.3e-16 Score=192.22 Aligned_cols=225 Identities=20% Similarity=0.258 Sum_probs=157.0
Q ss_pred hhchhhhHHHHHHHhcCCCCcccccCccc-------cccCccCchHHHHHHHHHHHhcccchhhhccCCcc---Cc-eEE
Q 003000 362 AMQFMKSGARVRRAYGKGLPQYLERGVDV-------KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---PG-GIL 430 (859)
Q Consensus 362 ~v~~~~i~~~vs~~tgip~~~~~~~~~~~-------~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~---~~-gvL 430 (859)
.++...+...++.|+++|.......+... ....+.|....+..+..++.. ...|+.. |. +++
T Consensus 420 ~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~-------~~~g~~~~~~p~~~~l 492 (758)
T 1r6b_X 420 TVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKM-------ARAGLGHEHKPVGSFL 492 (758)
T ss_dssp SCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHH-------HHTTCSCTTSCSEEEE
T ss_pred ccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHH-------HhcccCCCCCCceEEE
Confidence 35667788889999999877654332211 123455666666555554432 2334432 33 599
Q ss_pred EECCCCCCchhHHHhhhhcccccEEEeeccccchh------------hhcccchhhhhHHHHHHhcCCcEEEhhhhHhhh
Q 003000 431 LCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 498 (859)
Q Consensus 431 L~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~------------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~ 498 (859)
|+||||||||++|++|+..++.+++.++++++... |+|.... ..+...++..+++|+|||||+.+.
T Consensus 493 l~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~ 570 (758)
T 1r6b_X 493 FAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_dssp EECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC
T ss_pred EECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC
Confidence 99999999999999999999999999999988654 3332222 335666777788999999999986
Q ss_pred hccCCcCCCCchhHHHHHHHHHHhhcccc---------CCCCeEEEeccCCCC-------------------------CC
Q 003000 499 RERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------------------------IL 544 (859)
Q Consensus 499 ~~r~~~~~sgge~~r~~l~~LL~~ld~~~---------~~~~vlVIatTN~~~-------------------------~L 544 (859)
+. +++.|++.|+... +..+++||+|||.+. .+
T Consensus 571 ~~--------------~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 636 (758)
T 1r6b_X 571 PD--------------VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF 636 (758)
T ss_dssp HH--------------HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHS
T ss_pred HH--------------HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhc
Confidence 55 7888888887421 125789999999854 57
Q ss_pred CccCCCCCcccccccCCCCCHHHHHHHHHHHHccC-------CC---CCcccHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 003000 545 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-------PM---ADDVDYLAVASM--TDGMVGAELANIVEVAAI 611 (859)
Q Consensus 545 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~-------~~---~~d~dl~~lA~~--t~G~sgadL~~Lv~~A~~ 611 (859)
+|+|++ |||.+|.|++|+.+++..|++.++... .+ .++..+..|+.. ...+..+.|.++++.+..
T Consensus 637 ~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 637 TPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp CHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred CHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 889988 999999999999999999999887532 11 112223444432 234556777777776654
No 44
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.59 E-value=2.3e-15 Score=172.20 Aligned_cols=191 Identities=16% Similarity=0.217 Sum_probs=137.2
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~ 500 (859)
+.+++|+||||+|||||+++|++.+ +.+++++++..+...+.+.........|.......+++++|||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5579999999999999999999988 77888999887755443322221112233333336889999999998642
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC---CCccCCCCCccc--ccccCCCCCHHHHHHHHHHH
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 575 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~---LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~ 575 (859)
. . ....|+..++.....+..+||++.+.+.. +++.|++ ||. .++.+++|+.++|..|++..
T Consensus 210 ~---------~---~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 210 T---------G---VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp H---------H---HHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred h---------H---HHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 1 33444444444334445566666666654 7889988 885 78999999999999999988
Q ss_pred HccCC--CCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003000 576 ARKKP--MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 576 l~~~~--~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~ 633 (859)
+...+ +.++ .+..++..+.| +.+++.++++.+...|...+. .||.+++.+++...
T Consensus 276 ~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 276 LEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 86433 3333 36778888865 889999999999888876665 69999999987643
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.57 E-value=8.8e-15 Score=160.44 Aligned_cols=213 Identities=18% Similarity=0.178 Sum_probs=145.0
Q ss_pred ccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc--hhhhcc
Q 003000 392 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV--EIYVGV 469 (859)
Q Consensus 392 f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~--~~~~g~ 469 (859)
++.+.|....+..+...... +.+++|+||||||||+|++++|+.++.++..++++... ....|.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 45566777666444433221 24699999999999999999999999999888874221 111211
Q ss_pred cchh-hhhHHHHHHhcC---CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc---------cCCCCeEEEe
Q 003000 470 GASR-VRSLYQEAKDNA---PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIA 536 (859)
Q Consensus 470 ~~~~-l~~lfe~a~~~~---p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~---------~~~~~vlVIa 536 (859)
.... ....|. .... .+++||||++.+... .++.|+..|+.. ....+++||+
T Consensus 92 ~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~--------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 92 MIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK--------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp EEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH--------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred eeecCCCCceE--eccCcccccEEEEEccccCCHH--------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 1000 000000 0111 379999999987543 556666666532 1234688888
Q ss_pred ccCCCC-----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCC----------------------C-CcccHH
Q 003000 537 STNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM----------------------A-DDVDYL 588 (859)
Q Consensus 537 tTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~----------------------~-~d~dl~ 588 (859)
|+|..+ .+++++++ ||+..+.|++|+.+++.+|++.++..... . ++..+.
T Consensus 156 t~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 233 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEK 233 (331)
T ss_dssp EECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHH
T ss_pred ecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHH
Confidence 888654 38999999 99988999999999999999988764311 0 111122
Q ss_pred HHHhh-------------------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 589 AVASM-------------------TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 589 ~lA~~-------------------t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
.++.. ..|.|++.+..+++.|...|...++..|+.+|+.+++..+...
T Consensus 234 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 234 YIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 33221 1266999999999999999999999999999999999887654
No 46
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.57 E-value=3.1e-14 Score=157.77 Aligned_cols=222 Identities=18% Similarity=0.192 Sum_probs=149.9
Q ss_pred cCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---------cccEEEeeccccc
Q 003000 393 SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFV 463 (859)
Q Consensus 393 ~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---------~~~~~~is~s~~~ 463 (859)
+...|.+..+..+...+... +....+.+++|+||||||||++++.+++.+ +.+++.+++....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~--------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA--------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG--------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHH--------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 55666666655554433221 112335579999999999999999999988 7788889876533
Q ss_pred hhh---------h-------cccchh-hhhHHHHHHhc-CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc
Q 003000 464 EIY---------V-------GVGASR-VRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 525 (859)
Q Consensus 464 ~~~---------~-------g~~~~~-l~~lfe~a~~~-~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~ 525 (859)
..+ + +..... +..+++.+... .|++++|||++.+.... .....+..++..++.
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQE 161 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchhh
Confidence 211 1 111111 23344444333 37799999999986431 012356666666554
Q ss_pred ccCCCCeEEEeccCCC---CCCCccCCCCCcccc-cccCCCCCHHHHHHHHHHHHcc--CC-CCCcccHHHHHhhCC---
Q 003000 526 FEGRGNVITIASTNRP---DILDPALVRPGRFDR-KIFIPKPGLIGRMEILKVHARK--KP-MADDVDYLAVASMTD--- 595 (859)
Q Consensus 526 ~~~~~~vlVIatTN~~---~~LdpaLlrpgRfd~-~I~~~~Pd~~eR~~Il~~~l~~--~~-~~~d~dl~~lA~~t~--- 595 (859)
.....++.+|++||.+ +.+++.+.+ ||.. .|.|++|+.+++..|+..++.. .. ..++..+..++..+.
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREH 239 (387)
T ss_dssp C-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSS
T ss_pred cCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3215678899999887 678889988 8875 8999999999999999988764 11 122333566666665
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 596 GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 596 G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
| .++.+.++++.|...|...+...|+.+++..++....
T Consensus 240 G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 240 G-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp C-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5 5667779999999888887888999999999987653
No 47
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.56 E-value=4.9e-14 Score=142.94 Aligned_cols=201 Identities=21% Similarity=0.173 Sum_probs=139.0
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc-----cccEEEeecccc
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQF 462 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~ 462 (859)
....|.+..|....+..+...+..- .+.+++|+||+|+|||++++.++..+ ...++.++++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 3456777778777776666554321 12349999999999999999999875 345666766543
Q ss_pred chhhhcccchhhhhHHHHHH------hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEe
Q 003000 463 VEIYVGVGASRVRSLYQEAK------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 536 (859)
Q Consensus 463 ~~~~~g~~~~~l~~lfe~a~------~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIa 536 (859)
... ..+...+.... ...+.+++|||++.+... ..+.|+..++. ...++.+|+
T Consensus 80 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~--~~~~~~~i~ 137 (226)
T 2chg_A 80 RGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAALRRTMEM--YSKSCRFIL 137 (226)
T ss_dssp TCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------------HHHHHHHHHHH--TTTTEEEEE
T ss_pred cCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------------HHHHHHHHHHh--cCCCCeEEE
Confidence 211 11122222221 245789999999988543 44556666653 345778888
Q ss_pred ccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 003000 537 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMR 615 (859)
Q Consensus 537 tTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~ 615 (859)
+||.+..+++++.+ ||. .+.|++|+.++...++..++...+.. ++..+..++..+.| ..+.+.++++.+...+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-- 211 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--
Confidence 99999999999988 887 89999999999999999887654332 33346677777765 5666667776665433
Q ss_pred hCCCccCHHHHHHHHH
Q 003000 616 DGRTEITTDDLLQAAQ 631 (859)
Q Consensus 616 ~~~~~It~edl~~Al~ 631 (859)
..|+.+|+.+++.
T Consensus 212 ---~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ---EVVDADTIYQITA 224 (226)
T ss_dssp ---SCBCHHHHHHHHH
T ss_pred ---ceecHHHHHHHhc
Confidence 5799999999875
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=1.9e-14 Score=158.13 Aligned_cols=218 Identities=18% Similarity=0.225 Sum_probs=137.2
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc-------c-------
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------N------- 453 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-------~------- 453 (859)
+...|+++.|.+..+..+.... +. ..+.+++|+||||||||++|++++..++. +
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~--~~----------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTA--VD----------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH--HC----------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCCchhccChHHHHHHHHHHh--hC----------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 4567888888877543321111 11 11235999999999999999999997753 1
Q ss_pred -------------------EEEeeccccchhhhcccchhhhhHHHHH---------HhcCCcEEEhhhhHhhhhccCCcC
Q 003000 454 -------------------FFSISASQFVEIYVGVGASRVRSLYQEA---------KDNAPSVVFIDELDAVGRERGLIK 505 (859)
Q Consensus 454 -------------------~~~is~s~~~~~~~g~~~~~l~~lfe~a---------~~~~p~Il~iDEId~l~~~r~~~~ 505 (859)
++.+..+......+|.. .+...+... ....++++||||++.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~----- 159 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH----- 159 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-----
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-----
Confidence 11111110000111110 000111111 1123679999999988654
Q ss_pred CCCchhHHHHHHHHHHhhccc----c-------CCCCeEEEeccCCCC-CCCccCCCCCcccccccCCCC-CHHHHHHHH
Q 003000 506 GSGGQERDATLNQLLVCLDGF----E-------GRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKP-GLIGRMEIL 572 (859)
Q Consensus 506 ~sgge~~r~~l~~LL~~ld~~----~-------~~~~vlVIatTN~~~-~LdpaLlrpgRfd~~I~~~~P-d~~eR~~Il 572 (859)
.++.|+..++.. . ...+++||+|||..+ .++++|++ ||+..+.+++| +.+.+..|+
T Consensus 160 ---------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 160 ---------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp ---------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 556666655531 1 123688999999755 79999999 99988999998 677777888
Q ss_pred HHHHc-------------------------------cCCCCCcccHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHhCC
Q 003000 573 KVHAR-------------------------------KKPMADDVDYLAVASMTD---GMVGAELANIVEVAAINMMRDGR 618 (859)
Q Consensus 573 ~~~l~-------------------------------~~~~~~d~dl~~lA~~t~---G~sgadL~~Lv~~A~~~A~~~~~ 618 (859)
+.++. ...+. +..+..++.... +.+.+.+.++++.|...|...++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~ 307 (350)
T 1g8p_A 229 RRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA 307 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 66311 11222 222334443332 23679999999999999988898
Q ss_pred CccCHHHHHHHHHHHHcC
Q 003000 619 TEITTDDLLQAAQIEERG 636 (859)
Q Consensus 619 ~~It~edl~~Al~~~~~g 636 (859)
..|+.+|+..|+..+...
T Consensus 308 ~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 308 TAVGRDHLKRVATMALSH 325 (350)
T ss_dssp SBCCHHHHHHHHHHHHGG
T ss_pred CcCCHHHHHHHHHHHHhh
Confidence 889999999999887554
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.54 E-value=3.2e-14 Score=155.57 Aligned_cols=191 Identities=17% Similarity=0.187 Sum_probs=131.2
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccC
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~ 502 (859)
+.+++|+||||||||||++++++.+ +.+++++++..+...+.+.........|.... ..++++||||++.+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~- 114 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE- 114 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-
Confidence 4569999999999999999999988 78899999888765544332221112232222 247899999999985421
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC---CCCccCCCCCccc--ccccCCCCCHHHHHHHHHHHHc
Q 003000 503 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 503 ~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~---~LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
. ....++..++.....+..+|+++++.+. .++++|++ ||+ .++.|++ +.+++..|++.++.
T Consensus 115 --------~---~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 115 --------R---TQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp --------H---HHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred --------H---HHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 1 2333444444333344567777777776 68899988 886 6789999 99999999999887
Q ss_pred cCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHH---HHH-hCCCcc-CHHHHHHHHHHHH
Q 003000 578 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN---MMR-DGRTEI-TTDDLLQAAQIEE 634 (859)
Q Consensus 578 ~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~---A~~-~~~~~I-t~edl~~Al~~~~ 634 (859)
..++. ++..+..++..+ ...+++.++++.+... +.. .+...| +.+++.+++....
T Consensus 181 ~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 181 EFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHh
Confidence 55443 233467788888 4678888888877654 101 222357 8888888877553
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.53 E-value=3.2e-14 Score=147.01 Aligned_cols=180 Identities=16% Similarity=0.144 Sum_probs=125.6
Q ss_pred CceEEEECCCCCCchhHHHhhhhccc---ccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccC
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 502 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~---~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~ 502 (859)
+.+++|+||||||||+|+++++..+. .++..++++++...+. . .+... ..+.+++|||++.+....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~--~~~~vliiDe~~~~~~~~- 120 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST----A----LLEGL--EQFDLICIDDVDAVAGHP- 120 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG----G----GGTTG--GGSSEEEEETGGGGTTCH-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH----H----HHHhc--cCCCEEEEeccccccCCH-
Confidence 45799999999999999999998774 6677888776544321 1 11111 346799999999875431
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCCe-EEEeccCCCC---CCCccCCCCCccc--ccccCCCCCHHHHHHHHHHHH
Q 003000 503 LIKGSGGQERDATLNQLLVCLDGFEGRGNV-ITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHA 576 (859)
Q Consensus 503 ~~~~sgge~~r~~l~~LL~~ld~~~~~~~v-lVIatTN~~~---~LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l 576 (859)
. ....|+..++.......+ +|+.+++.+. .+++.+.+ ||. ..+.|++|+.+++..++..++
T Consensus 121 --------~---~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 121 --------L---WEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp --------H---HHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred --------H---HHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 0 133344444433333444 5555554444 45577877 775 899999999999999999988
Q ss_pred ccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 577 RKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 577 ~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
...+.. ++..+..++..+.| +.+++.++++.+...|...++ .||.+++..++.
T Consensus 188 ~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 188 AMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 755433 23346677887765 788999999999888765554 699999998863
No 51
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.52 E-value=2e-14 Score=164.70 Aligned_cols=204 Identities=23% Similarity=0.311 Sum_probs=142.7
Q ss_pred ccccccCccCchHHH---HHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 388 VDVKFSDVAGLGKIR---LELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v---~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
....|+++.|....+ ..+...+.. . ...+++|+||||||||||+++|++.++.+++.+++...
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~---~---------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA---G---------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH---T---------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc---C---------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 345788888888776 344433331 1 11569999999999999999999999999999886532
Q ss_pred hhhcccchhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc--
Q 003000 465 IYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST-- 538 (859)
Q Consensus 465 ~~~g~~~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT-- 538 (859)
+...++.++..+. ...++++|||||+.+... .++.|+..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCC
Confidence 2233445555544 245789999999988543 44556666663 456777655
Q ss_pred CCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCC-------C-CCcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 003000 539 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-------M-ADDVDYLAVASMTDGMVGAELANIVEVAA 610 (859)
Q Consensus 539 N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~-------~-~~d~dl~~lA~~t~G~sgadL~~Lv~~A~ 610 (859)
|....++++|++ |+. ++.|++|+.+++..++...+.... + .++..+..++..+.| ..+.+.++++.+.
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~ 219 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMA 219 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 555689999999 776 778999999999999999887521 1 123346677777655 6677888888887
Q ss_pred HHHHHh--CCCccCHHHHHHHHHH
Q 003000 611 INMMRD--GRTEITTDDLLQAAQI 632 (859)
Q Consensus 611 ~~A~~~--~~~~It~edl~~Al~~ 632 (859)
..+... +...||.+++.+++..
T Consensus 220 ~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 220 DMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HhcccccCCCCccCHHHHHHHHhh
Confidence 665422 4467999999998753
No 52
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.52 E-value=1.3e-13 Score=141.44 Aligned_cols=208 Identities=20% Similarity=0.258 Sum_probs=138.7
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEe--ecc-----
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI--SAS----- 460 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~i--s~s----- 460 (859)
....|++..|....+..+...+.. ...+..++|+||+|+|||+|++.+++.+......+ .+.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 344567777877777666655432 12245689999999999999999998774322110 000
Q ss_pred ---------ccchhhhc--ccchhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc
Q 003000 461 ---------QFVEIYVG--VGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 525 (859)
Q Consensus 461 ---------~~~~~~~g--~~~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~ 525 (859)
.+...... .....+..+++.+. ...+.+++|||++.+... .++.|+..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~--------------~~~~l~~~l~~ 152 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNALLKTLEE 152 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH--------------HHHHHHHHHHS
T ss_pred HHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH--------------HHHHHHHHHhc
Confidence 00000000 01112233443332 234689999999987433 56677777763
Q ss_pred ccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHH
Q 003000 526 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 604 (859)
Q Consensus 526 ~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~ 604 (859)
...++.+|++||.+..+++.+.+ |+ ..+.+++|+.++...++..++...... ++..+..++..+.| .++.+.+
T Consensus 153 --~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~ 226 (250)
T 1njg_A 153 --PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALS 226 (250)
T ss_dssp --CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHH
T ss_pred --CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 34578888999999899999888 65 589999999999999999888655432 33446778888877 7888888
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 605 IVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 605 Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+++.|... +...|+.+++.+++
T Consensus 227 ~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 227 LTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHhc----cCceecHHHHHHHh
Confidence 88877532 33479999998875
No 53
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.52 E-value=3.2e-14 Score=155.42 Aligned_cols=202 Identities=19% Similarity=0.201 Sum_probs=134.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 465 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 465 (859)
+.....|+++.|....+..+...+. ....|..++++||||||||++++++++.++.+++.++++...
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--
Confidence 3455678899998888777766655 123455688899999999999999999999999999987632
Q ss_pred hhcccchhhhhHHHHHHhc-----CCcEEEhhhhHhhh-hccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccC
Q 003000 466 YVGVGASRVRSLYQEAKDN-----APSVVFIDELDAVG-RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 539 (859)
Q Consensus 466 ~~g~~~~~l~~lfe~a~~~-----~p~Il~iDEId~l~-~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN 539 (859)
...++..+...... .+.+++|||+|.+. .. ..+.|+..++.. ..++.||++||
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~--------------~~~~L~~~le~~--~~~~~iI~~~n 144 (324)
T 3u61_B 86 -----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE--------------SQRHLRSFMEAY--SSNCSIIITAN 144 (324)
T ss_dssp -----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH--------------HHHHHHHHHHHH--GGGCEEEEEES
T ss_pred -----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH--------------HHHHHHHHHHhC--CCCcEEEEEeC
Confidence 22334434333222 56899999999885 32 456666666643 35678889999
Q ss_pred CCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHH-------ccCCCC-Cc-ccHHHHHhhCCCCCHHHHHHHHHHHH
Q 003000 540 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA-------RKKPMA-DD-VDYLAVASMTDGMVGAELANIVEVAA 610 (859)
Q Consensus 540 ~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l-------~~~~~~-~d-~dl~~lA~~t~G~sgadL~~Lv~~A~ 610 (859)
.+..+++++++ ||. ++.|++|+.+++..|+...+ ....+. ++ ..+..++..+.|.... +.+.++.+.
T Consensus 145 ~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~-a~~~L~~~~ 220 (324)
T 3u61_B 145 NIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK-TIGELDSYS 220 (324)
T ss_dssp SGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH-HHHHHHHHG
T ss_pred CccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH-HHHHHHHHh
Confidence 99999999999 885 79999999999877665433 222222 23 4467788887764444 435554443
Q ss_pred HHHHHhCCCccCHHHHHHHHH
Q 003000 611 INMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 611 ~~A~~~~~~~It~edl~~Al~ 631 (859)
....|+.+++..++.
T Consensus 221 ------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 ------SKGVLDAGILSLVTN 235 (324)
T ss_dssp ------GGTCBCC--------
T ss_pred ------ccCCCCHHHHHHHhC
Confidence 223588888887654
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.52 E-value=2.9e-14 Score=154.32 Aligned_cols=199 Identities=19% Similarity=0.250 Sum_probs=134.6
Q ss_pred ccCchHHHHHHHHHHHhcccchhhhccCCccCc-eEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----
Q 003000 395 VAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG-GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----- 465 (859)
Q Consensus 395 ~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~-gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~----- 465 (859)
+.|....+..+...+....... .....|. .++|+||||||||++|++|++.+ +.+++.++++.+...
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHH
Confidence 5577777766666555321100 0011233 59999999999999999999987 567889998876432
Q ss_pred hhcccch-----hhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---------CCCC
Q 003000 466 YVGVGAS-----RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGN 531 (859)
Q Consensus 466 ~~g~~~~-----~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~---------~~~~ 531 (859)
.+|.... ....+.......+++++||||++.+... +++.|+..|+... +..+
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPD--------------VFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHH--------------HHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHH--------------HHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 2221111 0123445555566789999999998654 6777777776422 1247
Q ss_pred eEEEeccCC--------------------------CCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC------
Q 003000 532 VITIASTNR--------------------------PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK------ 579 (859)
Q Consensus 532 vlVIatTN~--------------------------~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~------ 579 (859)
++||+|||. ...++|+|++ ||+..+.|++|+.+++..|++.++...
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 889999998 4468899987 999999999999999999999876542
Q ss_pred -CCC---CcccHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 003000 580 -PMA---DDVDYLAVASMTD--GMVGAELANIVEVAAINM 613 (859)
Q Consensus 580 -~~~---~d~dl~~lA~~t~--G~sgadL~~Lv~~A~~~A 613 (859)
... .+..+..|+...- ....++|.++++.+...+
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 111 2223455665544 567788888888776544
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.50 E-value=9.3e-14 Score=155.27 Aligned_cols=202 Identities=23% Similarity=0.289 Sum_probs=124.5
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc-hhhhcccc-hhhhhHHHHH----HhcCCcEEEhhhhHhhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-EIYVGVGA-SRVRSLYQEA----KDNAPSVVFIDELDAVGR 499 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~-~~~~g~~~-~~l~~lfe~a----~~~~p~Il~iDEId~l~~ 499 (859)
+.+++|+||||||||++|++||..++.+++.++++.+. ..|+|... ..+..++... ....++++||||++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 151 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence 45699999999999999999999999999999998865 34555432 2233444332 234678999999999876
Q ss_pred ccCCcCCCCchhHHHHHHHHHHhhccc-------------------cCCCCeEEEeccCCC-------------------
Q 003000 500 ERGLIKGSGGQERDATLNQLLVCLDGF-------------------EGRGNVITIASTNRP------------------- 541 (859)
Q Consensus 500 ~r~~~~~sgge~~r~~l~~LL~~ld~~-------------------~~~~~vlVIatTN~~------------------- 541 (859)
.+.............+++.|+..|++. ....|+++|++||..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~ 231 (376)
T 1um8_A 152 LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQ 231 (376)
T ss_dssp ------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCC
T ss_pred hcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCc
Confidence 532211111111123677788777753 123567888877621
Q ss_pred ----------------------CCCCccCCCCCcccccccCCCCCHHHHHHHHHH----H-------HccCCCC---Ccc
Q 003000 542 ----------------------DILDPALVRPGRFDRKIFIPKPGLIGRMEILKV----H-------ARKKPMA---DDV 585 (859)
Q Consensus 542 ----------------------~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~----~-------l~~~~~~---~d~ 585 (859)
..+.|+|++ ||+.+|.|++++.++...|+.. + +...... ++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T 1um8_A 232 EKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE 309 (376)
T ss_dssp SSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH
T ss_pred hhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH
Confidence 124567766 8989999999999999998862 1 1111111 222
Q ss_pred cHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhCC------CccCHHHHHHH
Q 003000 586 DYLAVASMTD--GMVGAELANIVEVAAINMMRDGR------TEITTDDLLQA 629 (859)
Q Consensus 586 dl~~lA~~t~--G~sgadL~~Lv~~A~~~A~~~~~------~~It~edl~~A 629 (859)
.+..|+.... ....+.|.++++.+...+..+.. ..||.+++..+
T Consensus 310 a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 310 AIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCC
Confidence 2455555532 35578999999988876655322 25888888654
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.49 E-value=7.6e-13 Score=145.82 Aligned_cols=212 Identities=20% Similarity=0.271 Sum_probs=145.7
Q ss_pred cccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhccc
Q 003000 391 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG 470 (859)
Q Consensus 391 ~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~ 470 (859)
.|+...|....+..+...+..-.. .-..+..++|+||||+|||||+++||+.++.++...++..+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------ 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------ 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------
Confidence 566666666555554443332110 0123456999999999999999999999988776665443221
Q ss_pred chhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc----------------CCCCeEE
Q 003000 471 ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGNVIT 534 (859)
Q Consensus 471 ~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~----------------~~~~vlV 534 (859)
...+..++.. ...++|+++||++.+... +...|+..++... .-..+.+
T Consensus 90 ~~~l~~~~~~--~~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 QGDMAAILTS--LERGDVLFIDEIHRLNKA--------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp HHHHHHHHHH--CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred HHHHHHHHHH--ccCCCEEEEcchhhcCHH--------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1112222222 234679999999887532 2233333332211 0124677
Q ss_pred EeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003000 535 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM 613 (859)
Q Consensus 535 IatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A 613 (859)
+++||.+..|++.+++ ||...+.+++|+.+++.+|++......... ++..+..++..+.| +++.+.++++.+...|
T Consensus 154 i~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 7899999999999998 998889999999999999999887655443 23346778888876 5578889999998888
Q ss_pred HHhCCCccCHHHHHHHHHHHH
Q 003000 614 MRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 614 ~~~~~~~It~edl~~Al~~~~ 634 (859)
...+...||.+++.+++....
T Consensus 231 ~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHT
T ss_pred HHcCCCCcCHHHHHHHHHHhC
Confidence 888887899999999998764
No 57
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=3.2e-13 Score=150.13 Aligned_cols=212 Identities=18% Similarity=0.208 Sum_probs=145.3
Q ss_pred cCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc-----------cccEEEeeccc
Q 003000 393 SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----------GVNFFSISASQ 461 (859)
Q Consensus 393 ~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el-----------~~~~~~is~s~ 461 (859)
++..|.+..+..+...+..+.. -..+++++|+||+|||||+|++.++..+ +.+++.+++..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 5567777777666665543211 1335679999999999999999999987 78889998765
Q ss_pred cc-hh----------h-------hcccchh-hhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHH-HHHHHH
Q 003000 462 FV-EI----------Y-------VGVGASR-VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDAT-LNQLLV 521 (859)
Q Consensus 462 ~~-~~----------~-------~g~~~~~-l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~-l~~LL~ 521 (859)
.. .. . .+..... +..++..+....+ +|+|||++.+..... ... +..|+.
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----------~~~~l~~l~~ 160 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----------GDIVLYQLLR 160 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----------SHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----------CceeHHHHhc
Confidence 43 11 1 0111111 2334444433334 999999999865310 013 455553
Q ss_pred hhccccCCCCeEEEeccCCC---CCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHcc----CCCCCcccHHHHHhhC
Q 003000 522 CLDGFEGRGNVITIASTNRP---DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK----KPMADDVDYLAVASMT 594 (859)
Q Consensus 522 ~ld~~~~~~~vlVIatTN~~---~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~----~~~~~d~dl~~lA~~t 594 (859)
.. .++.||++||.+ +.+++.+++ ||...|.|++|+.++...|+..++.. ..+. +..+..++..+
T Consensus 161 ~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~~ 231 (384)
T 2qby_B 161 SD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAIS 231 (384)
T ss_dssp SS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHHH
T ss_pred CC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHHH
Confidence 32 678899999887 678899888 88889999999999999999988763 2222 33356677766
Q ss_pred CC--CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 595 DG--MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 595 ~G--~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
.+ -..+.+.++++.|...|. +...|+.+++..++....
T Consensus 232 ~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 232 AKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 52 245666688888877765 556899999999987654
No 58
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=5.5e-13 Score=147.52 Aligned_cols=221 Identities=20% Similarity=0.239 Sum_probs=146.6
Q ss_pred ccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc------cccEEEeeccccchh
Q 003000 392 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA------GVNFFSISASQFVEI 465 (859)
Q Consensus 392 f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el------~~~~~~is~s~~~~~ 465 (859)
.+...|-+..+..+...+.... ....+..++|+||+|||||+|++.+++.+ +.+++.+++......
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH
Confidence 3556666665544444322110 01334569999999999999999999988 778888887543211
Q ss_pred ---------hh-------cccchh-hhhHHHHHHhcC-CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc
Q 003000 466 ---------YV-------GVGASR-VRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE 527 (859)
Q Consensus 466 ---------~~-------g~~~~~-l~~lfe~a~~~~-p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~ 527 (859)
.+ +..... +..+++.+.... |.+++|||++.+..... ...+..|+..++..
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~~- 159 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSEV- 159 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhhc-
Confidence 00 111111 233444444433 88999999999864311 01566777666544
Q ss_pred CCCCeEEEeccCCC---CCCCccCCCCCccc-ccccCCCCCHHHHHHHHHHHHccC---CCCCcccHHHHHhhCC---CC
Q 003000 528 GRGNVITIASTNRP---DILDPALVRPGRFD-RKIFIPKPGLIGRMEILKVHARKK---PMADDVDYLAVASMTD---GM 597 (859)
Q Consensus 528 ~~~~vlVIatTN~~---~~LdpaLlrpgRfd-~~I~~~~Pd~~eR~~Il~~~l~~~---~~~~d~dl~~lA~~t~---G~ 597 (859)
...++.+|++||.+ ..+++.+.+ ||. +.|.|++|+.++...|+..++... ....+..+..++..+. |
T Consensus 160 ~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G- 236 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG- 236 (386)
T ss_dssp CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-
T ss_pred CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-
Confidence 34678888888877 467888877 665 489999999999999999877531 1122233455666665 5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 598 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 598 sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
.++.+.++++.|...+...+...|+.+++..|+....
T Consensus 237 ~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 237 DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 4566668999998888888888999999999987764
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.9e-14 Score=155.90 Aligned_cols=139 Identities=8% Similarity=0.069 Sum_probs=101.2
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEeeccccchh----------hhc------ccchhhhhH
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI----------YVG------VGASRVRSL 477 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~~~----------~~g------~~~~~l~~l 477 (859)
..|.+++|+||||||||++++.++.++ ...+++++|..+... ..| .....+..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 456779999999999999999999988 346788887664432 112 122345666
Q ss_pred HHHH--HhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCC----CCccCCCC
Q 003000 478 YQEA--KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI----LDPALVRP 551 (859)
Q Consensus 478 fe~a--~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~----LdpaLlrp 551 (859)
|..+ ....+.|++|||+|.+. . ..++..|+.... ....+++||+.+|..+. +++++.+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-~------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-S------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-C------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhh-c------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 7664 34567899999999986 1 115666665433 34577899999998864 5666666
Q ss_pred Cccc-ccccCCCCCHHHHHHHHHHHHccC
Q 003000 552 GRFD-RKIFIPKPGLIGRMEILKVHARKK 579 (859)
Q Consensus 552 gRfd-~~I~~~~Pd~~eR~~Il~~~l~~~ 579 (859)
||. .+|.|++|+.++...|++.++...
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 886 689999999999999999888653
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=3.1e-13 Score=148.53 Aligned_cols=207 Identities=17% Similarity=0.165 Sum_probs=141.2
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc------cEEEeecc
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------NFFSISAS 460 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~------~~~~is~s 460 (859)
.....|+++.|....+..+...+.. . . +.+++|+||||||||++++++++.++. .+..++++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~---~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKS---A--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTC---T--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhc---C--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 4456788888888777555444321 1 1 134999999999999999999998643 46667765
Q ss_pred ccchhhhcccchhhhhHHHHHH----------------hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhc
Q 003000 461 QFVEIYVGVGASRVRSLYQEAK----------------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 524 (859)
Q Consensus 461 ~~~~~~~g~~~~~l~~lfe~a~----------------~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld 524 (859)
+.... ..++..+.... ...+.+++|||++.+... ..+.|+..++
T Consensus 99 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~--------------~~~~Ll~~le 158 (353)
T 1sxj_D 99 DERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD--------------AQSALRRTME 158 (353)
T ss_dssp SCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH--------------HHHHHHHHHH
T ss_pred cccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH--------------HHHHHHHHHH
Confidence 53111 11122221111 123569999999988643 4566776676
Q ss_pred cccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHH
Q 003000 525 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 603 (859)
Q Consensus 525 ~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~ 603 (859)
.. ..++.+|.+||.+..+++++++ |+. .+.|++|+.++...++...+...++. ++..+..++..+.|. .+.+.
T Consensus 159 ~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~ 232 (353)
T 1sxj_D 159 TY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGI 232 (353)
T ss_dssp HT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHH
T ss_pred hc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHH
Confidence 43 3456677788999999999998 886 88999999999999999887654432 334467788888764 55566
Q ss_pred HHHHHHHHHHHHhCCC-ccCHHHHHHHHH
Q 003000 604 NIVEVAAINMMRDGRT-EITTDDLLQAAQ 631 (859)
Q Consensus 604 ~Lv~~A~~~A~~~~~~-~It~edl~~Al~ 631 (859)
++++.+...+.+.+.. .|+.+++..++.
T Consensus 233 ~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 233 TLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 7777776665544433 699999988754
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.46 E-value=1.1e-12 Score=145.90 Aligned_cols=219 Identities=13% Similarity=0.109 Sum_probs=150.2
Q ss_pred ccCccCchHHHHHHHHHHHhcccchhhhccCCccCc--eEEEECCCCCCchhHHHhhhhcc----cccEEEeeccccchh
Q 003000 392 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG--GILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEI 465 (859)
Q Consensus 392 f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~--gvLL~GPpGtGKTtLakaLA~el----~~~~~~is~s~~~~~ 465 (859)
.+...|-+..+..+...+..... -..+. .++|+||||||||+|++.+++.+ +..++.+++......
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 35566777776666655543211 02233 69999999999999999999988 567888887654321
Q ss_pred ---------hhcc-------cchhh-hhHHHHHHh-cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc
Q 003000 466 ---------YVGV-------GASRV-RSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE 527 (859)
Q Consensus 466 ---------~~g~-------~~~~l-~~lfe~a~~-~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~ 527 (859)
.++. ....+ ..+...+.. ..|.+++|||++.+... .+..|+..++...
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~--------------~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPD--------------ILSTFIRLGQEAD 153 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHH--------------HHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchH--------------HHHHHHHHHHhCC
Confidence 0111 11111 122222222 44789999999988322 6667776665433
Q ss_pred C--CCCeEEEeccCCC---CCCCccCCCCCcccc-cccCCCCCHHHHHHHHHHHHcc---CCCCCcccHHHHHhhCC---
Q 003000 528 G--RGNVITIASTNRP---DILDPALVRPGRFDR-KIFIPKPGLIGRMEILKVHARK---KPMADDVDYLAVASMTD--- 595 (859)
Q Consensus 528 ~--~~~vlVIatTN~~---~~LdpaLlrpgRfd~-~I~~~~Pd~~eR~~Il~~~l~~---~~~~~d~dl~~lA~~t~--- 595 (859)
. ..++.||++||.+ +.+++.+.+ ||.. .|.|++++.++...++...+.. ....++..+..++..+.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 2 2578888888887 567888877 8775 7999999999999999988764 12223445677777773
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003000 596 -----GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 596 -----G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 634 (859)
+-.++.+.++++.|...|...+...|+.+++..++....
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 235677889999999888888888999999999987654
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.46 E-value=5.3e-13 Score=162.60 Aligned_cols=221 Identities=21% Similarity=0.290 Sum_probs=152.3
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEeec
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISA 459 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~ 459 (859)
-.|+++.|.+..+..+.++.. ...+.+++|+||||||||+++++++..+ +..++.+++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 356777777766555444322 1234579999999999999999999876 556777777
Q ss_pred cccc--hhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEec
Q 003000 460 SQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS 537 (859)
Q Consensus 460 s~~~--~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIat 537 (859)
+.+. ..|.|.....+..+|+.+....++++||||++.+.+.... +++ .....+.|.. +....++.+|++
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~~~--~~~~~~~L~~----~l~~~~~~~I~a 321 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGG--QVDAANLIKP----LLSSGKIRVIGS 321 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS---SSC--HHHHHHHHSS----CSSSCCCEEEEE
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC---Ccc--hHHHHHHHHH----HHhCCCeEEEEE
Confidence 7665 3466666677788898888777899999999998654211 111 1123333332 234577889999
Q ss_pred cCCCC-----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHcc----CCC-CCcccHHHHHhhC-----CCCCHHHH
Q 003000 538 TNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK----KPM-ADDVDYLAVASMT-----DGMVGAEL 602 (859)
Q Consensus 538 TN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~----~~~-~~d~dl~~lA~~t-----~G~sgadL 602 (859)
||.++ .+|++|.+ ||+ .|.|+.|+.+++..|++.++.. ..+ ..+..+..++..+ ..+.+..+
T Consensus 322 t~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp ECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred eCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 98753 47899998 998 7999999999999999976643 111 1222344555443 34567788
Q ss_pred HHHHHHHHHHHHH----hCCCccCHHHHHHHHHHHH
Q 003000 603 ANIVEVAAINMMR----DGRTEITTDDLLQAAQIEE 634 (859)
Q Consensus 603 ~~Lv~~A~~~A~~----~~~~~It~edl~~Al~~~~ 634 (859)
..++++|...+.. .+...|+.+|+..++....
T Consensus 399 i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 8999998766655 2356799999999988764
No 63
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=5e-13 Score=155.88 Aligned_cols=224 Identities=17% Similarity=0.210 Sum_probs=141.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccc--chhhhccCCc---cCceEEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFTH--GEMYRRRGVR---IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~~--~~~~~~~gl~---~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+.....|+++.|....+..+...+..+.. +..+...|.. .+++++|+||||||||++|+++|.+++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 44556788999999988888877764321 1223333332 456899999999999999999999999999999998
Q ss_pred ccchhhhcccc-------hhhhhHHHHH-----HhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccC
Q 003000 461 QFVEIYVGVGA-------SRVRSLYQEA-----KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG 528 (859)
Q Consensus 461 ~~~~~~~g~~~-------~~l~~lfe~a-----~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~ 528 (859)
+.......... ..+..+|..+ ....++||+|||+|.+..... ..++.|+..++. .
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----------~~l~~L~~~l~~--~ 178 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----------GGVGQLAQFCRK--T 178 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----------THHHHHHHHHHH--C
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----------HHHHHHHHHHHh--c
Confidence 76543221110 1123334333 234578999999999864311 134455555542 2
Q ss_pred CCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC--CCCCcccHHHHHhhCCCCCHHHHHHHH
Q 003000 529 RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--PMADDVDYLAVASMTDGMVGAELANIV 606 (859)
Q Consensus 529 ~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~--~~~~d~dl~~lA~~t~G~sgadL~~Lv 606 (859)
...+++|+++.....+++ +. |+...|.|++|+.+++..++...+... .+.+ ..+..++..+.|. .+.+.+++
T Consensus 179 ~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s~Gd-iR~~i~~L 252 (516)
T 1sxj_A 179 STPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTTRGD-IRQVINLL 252 (516)
T ss_dssp SSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHTTTC-HHHHHHHH
T ss_pred CCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCc-HHHHHHHH
Confidence 334555555444344443 43 445689999999999999998776543 3333 3477888887652 33333444
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003000 607 EVAAINMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 607 ~~A~~~A~~~~~~~It~edl~~Al~~~ 633 (859)
..+ +. +...|+.+++..++...
T Consensus 253 ~~~---~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 253 STI---ST--TTKTINHENINEISKAW 274 (516)
T ss_dssp THH---HH--HSSCCCTTHHHHHHHHH
T ss_pred HHH---Hh--cCCCCchHHHHHHHHhh
Confidence 332 22 33468988888877644
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.44 E-value=4.4e-13 Score=154.49 Aligned_cols=205 Identities=22% Similarity=0.303 Sum_probs=134.9
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEee
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 458 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is 458 (859)
.-.|+.+.|.+..+..+..++.. ....+++|+||||||||+++++||..+ +.+++.++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 34577788888777655544331 223568999999999999999999986 67788888
Q ss_pred ccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc
Q 003000 459 ASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 538 (859)
Q Consensus 459 ~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT 538 (859)
++ ..|.|.....++.+|..+....++|+||| +.. ...+.|+..|+ .+.+.||++|
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~~-------------~a~~~L~~~L~----~g~v~vI~at 298 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AAI-------------DASNILKPSLA----RGELQCIGAT 298 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEEC
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cch-------------hHHHHHHHhhc----CCCEEEEecC
Confidence 87 55667767778889999988889999999 110 13445554443 5678999999
Q ss_pred CCCC-----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC----CCC-CcccHHHHHhhCC-----CCCHHHHH
Q 003000 539 NRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PMA-DDVDYLAVASMTD-----GMVGAELA 603 (859)
Q Consensus 539 N~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~----~~~-~d~dl~~lA~~t~-----G~sgadL~ 603 (859)
|.+. .+|++|++ ||. .|.|+.|+.+++..|++.++... .+. .+..+..++..+. .+.+....
T Consensus 299 ~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai 375 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (468)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred CHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHH
Confidence 9887 58999999 998 59999999999999999877552 221 2333455554443 34456777
Q ss_pred HHHHHHHHHHHHhCC-CccCHHHHHHHHHHH
Q 003000 604 NIVEVAAINMMRDGR-TEITTDDLLQAAQIE 633 (859)
Q Consensus 604 ~Lv~~A~~~A~~~~~-~~It~edl~~Al~~~ 633 (859)
.++..|...+..... .......+...+...
T Consensus 376 ~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 376 DLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 888888766554432 334455555555443
No 65
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.43 E-value=8.1e-13 Score=142.76 Aligned_cols=203 Identities=22% Similarity=0.210 Sum_probs=138.9
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc-----cccEEEeec
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISA 459 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~ 459 (859)
++.....|+++.|....+..+...+. . -..+ +++|+||+|||||+++++++..+ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34455678888888777655544322 1 1222 39999999999999999999886 445777777
Q ss_pred cccchhhhcccchhhhhHHHHHH------hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeE
Q 003000 460 SQFVEIYVGVGASRVRSLYQEAK------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVI 533 (859)
Q Consensus 460 s~~~~~~~g~~~~~l~~lfe~a~------~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vl 533 (859)
+.... ...++..+.... ...+.+++|||+|.+... ..+.|+..++. ...+++
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~ 134 (319)
T 2chq_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAALRRTMEM--YSKSCR 134 (319)
T ss_dssp TSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH--------------HHHTTGGGTSS--SSSSEE
T ss_pred ccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH--------------HHHHHHHHHHh--cCCCCe
Confidence 65321 112222333222 134789999999988543 56677777773 346788
Q ss_pred EEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 003000 534 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN 612 (859)
Q Consensus 534 VIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~ 612 (859)
+|++||.+..+++++.+ |+. .+.|++|+.+++..++..++...+.. ++..+..++..+.| ..+.+.++++.+..
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~- 209 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA- 209 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH-
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH-
Confidence 88899999999999988 775 89999999999999999888765543 33345667776655 44555555554432
Q ss_pred HHHhCCCccCHHHHHHHH
Q 003000 613 MMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 613 A~~~~~~~It~edl~~Al 630 (859)
. ...|+.+++..++
T Consensus 210 ---~-~~~i~~~~v~~~~ 223 (319)
T 2chq_A 210 ---I-GEVVDADTIYQIT 223 (319)
T ss_dssp ---S-SSCBCHHHHHHHT
T ss_pred ---c-CCCCCHHHHHHHH
Confidence 1 3469999987764
No 66
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=3.1e-13 Score=160.11 Aligned_cols=189 Identities=17% Similarity=0.194 Sum_probs=127.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEe----eccccchhhhcc---cchhh-hhHHHHHHhcCCcEEEhhhhHhhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI----SASQFVEIYVGV---GASRV-RSLYQEAKDNAPSVVFIDELDAVGR 499 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~i----s~s~~~~~~~g~---~~~~l-~~lfe~a~~~~p~Il~iDEId~l~~ 499 (859)
++||+||||||||+||+++|..++...+.. +++.+....... +.... ...+..+ ..+++|||||+.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~ 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhCCH
Confidence 699999999999999999999887655432 112211111100 00000 1122222 357999999999855
Q ss_pred ccCCcCCCCchhHHHHHHHHHHhhcccc-----------CCCCeEEEeccCCCC-------------CCCccCCCCCccc
Q 003000 500 ERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRFD 555 (859)
Q Consensus 500 ~r~~~~~sgge~~r~~l~~LL~~ld~~~-----------~~~~vlVIatTN~~~-------------~LdpaLlrpgRfd 555 (859)
. ..+.|+..|+... .+.++.||+|||... .++++|++ |||
T Consensus 406 ~--------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFD 469 (595)
T 3f9v_A 406 E--------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFD 469 (595)
T ss_dssp H--------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCS
T ss_pred h--------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCe
Confidence 4 5667777776421 135688999999986 89999999 998
Q ss_pred ccc-cCCCCCHHHHHHHHHHHHccCC--------------------------CCCcccHHHHHhh--------------C
Q 003000 556 RKI-FIPKPGLIGRMEILKVHARKKP--------------------------MADDVDYLAVASM--------------T 594 (859)
Q Consensus 556 ~~I-~~~~Pd~~eR~~Il~~~l~~~~--------------------------~~~d~dl~~lA~~--------------t 594 (859)
..+ ..+.|+.+ ...|.+..+.... ...+.....|... +
T Consensus 470 l~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~ 548 (595)
T 3f9v_A 470 LIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSP 548 (595)
T ss_dssp CCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSC
T ss_pred EEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 654 55667666 7777776664321 1111112223332 3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 595 DGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 595 ~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
.+.|.+.+.++++.|...|..+++..|+.+|+.+|+..+...
T Consensus 549 ~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 549 ILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp BCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999876543
No 67
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.41 E-value=1.3e-13 Score=136.60 Aligned_cols=158 Identities=26% Similarity=0.426 Sum_probs=105.1
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEeec
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISA 459 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~ 459 (859)
..|+...|....+..+.+... . ..+.+++|+||+|||||++++.++..+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred ccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 356677777766554444322 1 235679999999999999999999986 577788887
Q ss_pred cccch--hhhcccchhhhhHHHHHHh-cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEe
Q 003000 460 SQFVE--IYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 536 (859)
Q Consensus 460 s~~~~--~~~g~~~~~l~~lfe~a~~-~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIa 536 (859)
+.+.. .+.+.....+..+++.+.. ..+++++|||++.+...... .+... ..+.|...++ ..++.+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~---~~~~l~~~~~----~~~~~~i~ 156 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMD---AGNMLKPALA----RGELHCVG 156 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCC---CHHHHHHHHH----TTSCCEEE
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHH---HHHHHHHhhc----cCCeEEEE
Confidence 76542 2333333445566665543 45779999999998644211 11111 2222222222 35678888
Q ss_pred ccCCCC-----CCCccCCCCCcccccccCCCCCHHHHHHHH
Q 003000 537 STNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEIL 572 (859)
Q Consensus 537 tTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il 572 (859)
+||.++ .+++++++ ||+ .|.|++|+.+++.+|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 888876 68999998 998 6999999999998875
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=3.2e-12 Score=138.35 Aligned_cols=202 Identities=16% Similarity=0.167 Sum_probs=138.9
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccc
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQ 461 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~ 461 (859)
.....|++..|....+..+...+.. -..+. ++|+||+|+|||+++++++..+ +.+++.+++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 3445677788888887766665431 12233 9999999999999999999886 34566776654
Q ss_pred cchhhhcccchhhhhHHHHHH-------hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEE
Q 003000 462 FVEIYVGVGASRVRSLYQEAK-------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 534 (859)
Q Consensus 462 ~~~~~~g~~~~~l~~lfe~a~-------~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlV 534 (859)
.. +...++.+++... ...+.+++|||++.+... ..+.|+..++. ...++.+
T Consensus 83 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~~ 140 (323)
T 1sxj_B 83 DR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQALRRTMEL--YSNSTRF 140 (323)
T ss_dssp CC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHHTTHHHHHH--TTTTEEE
T ss_pred cc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHHHHHHHHhc--cCCCceE
Confidence 21 1233444555443 223779999999987543 45566666663 3457788
Q ss_pred EeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 003000 535 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM 613 (859)
Q Consensus 535 IatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A 613 (859)
|.+||.+..+++.+.+ |+. .+.|++|+.+++..++..++...+.. ++..+..++..+.|. .+.+.++++.+...
T Consensus 141 il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~~~~~- 215 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQSTVAG- 215 (323)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-
T ss_pred EEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHhc-
Confidence 8888999999999988 665 89999999999999999887654332 333466788887664 44455666555421
Q ss_pred HHhCCCccCHHHHHHHHH
Q 003000 614 MRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 614 ~~~~~~~It~edl~~Al~ 631 (859)
. ..|+.+++..++.
T Consensus 216 --~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 --H--GLVNADNVFKIVD 229 (323)
T ss_dssp --H--SSBCHHHHHHHHT
T ss_pred --C--CCcCHHHHHHHHC
Confidence 1 3599999887753
No 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.37 E-value=4.3e-12 Score=140.44 Aligned_cols=208 Identities=20% Similarity=0.253 Sum_probs=140.9
Q ss_pred ccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEE--Eeeccc----
Q 003000 388 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF--SISASQ---- 461 (859)
Q Consensus 388 ~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~--~is~s~---- 461 (859)
....|+++.|....+..+...+.. ...+..++|+||+|+|||++++++++.+..... ...|+.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 445678888888887766665532 123456899999999999999999987743211 001110
Q ss_pred ----------cchhhh--cccchhhhhHHHHHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcc
Q 003000 462 ----------FVEIYV--GVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 525 (859)
Q Consensus 462 ----------~~~~~~--g~~~~~l~~lfe~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~ 525 (859)
+..... ......++.+++.+.. ..+.+++|||++.+... .++.|+..++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~Ll~~le~ 145 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNALLKTLEE 145 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH--------------HHHHHHHHHHS
T ss_pred HHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH--------------HHHHHHHHHhc
Confidence 000000 0112234556665542 23679999999987543 56777777774
Q ss_pred ccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHH
Q 003000 526 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 604 (859)
Q Consensus 526 ~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~ 604 (859)
...++++|++||.+..+.+.+.+ |+ ..+.|++|+.++...++..++...+.. ++..+..++..+.| +.+.+.+
T Consensus 146 --~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~ 219 (373)
T 1jr3_A 146 --PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALS 219 (373)
T ss_dssp --CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHH
T ss_pred --CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHH
Confidence 35678888888888889999988 65 689999999999999999888655443 23335678888866 6777878
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHH
Q 003000 605 IVEVAAINMMRDGRTEITTDDLLQAA 630 (859)
Q Consensus 605 Lv~~A~~~A~~~~~~~It~edl~~Al 630 (859)
+++.+... +...|+.+++..++
T Consensus 220 ~l~~~~~~----~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 220 LTDQAIAS----GDGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHH----TTTCBCHHHHHHHT
T ss_pred HHHHHHHh----cCCcccHHHHHHHh
Confidence 88777533 23469999988764
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.36 E-value=2.8e-12 Score=156.27 Aligned_cols=188 Identities=23% Similarity=0.328 Sum_probs=128.8
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEee
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 458 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is 458 (859)
.-.++.+.|.+..+..+..++.. ..+.+++|+||||||||++|++||..+ +.+++.++
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred hCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 34577788888777665544321 224569999999999999999999986 67777777
Q ss_pred ccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc
Q 003000 459 ASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 538 (859)
Q Consensus 459 ~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT 538 (859)
+ ...|.|.....++.+|..+....++|+||| +.. ...+.|+..++ .+.+.+|++|
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~~-------------~~~~~L~~~l~----~~~v~~I~at 298 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AAI-------------DASNILKPSLA----RGELQCIGAT 298 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEEC
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cch-------------hHHHHHHHHHh----cCCEEEEeCC
Confidence 7 344677777888999999998889999999 110 03445554444 5678999999
Q ss_pred CCCC-----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC----CCC-CcccHHHHHhh-----CCCCCHHHHH
Q 003000 539 NRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PMA-DDVDYLAVASM-----TDGMVGAELA 603 (859)
Q Consensus 539 N~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~----~~~-~d~dl~~lA~~-----t~G~sgadL~ 603 (859)
|... .+|+++.| ||. .|.|+.|+.+++..|++.++... .+. .+..+..++.. +.++.++...
T Consensus 299 ~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 9888 69999999 995 69999999999999999776553 111 22223444433 4567788888
Q ss_pred HHHHHHHHHHHHh
Q 003000 604 NIVEVAAINMMRD 616 (859)
Q Consensus 604 ~Lv~~A~~~A~~~ 616 (859)
.++..|+..+...
T Consensus 376 ~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 376 DLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999887666544
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.35 E-value=3.9e-13 Score=155.59 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=118.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhccc--ccEEEeeccc-cchhhhcccc-hhh--hhHHHHHHhc---CCcEEEhhhhHhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAG--VNFFSISASQ-FVEIYVGVGA-SRV--RSLYQEAKDN---APSVVFIDELDAV 497 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~--~~~~~is~s~-~~~~~~g~~~-~~l--~~lfe~a~~~---~p~Il~iDEId~l 497 (859)
.+++|+||||||||+||++||..++ .++..+.+.- .....+|... ... ...|..+... .++|+|||||+.+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~ 121 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA 121 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGC
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh
Confidence 4699999999999999999999874 3444444421 1111222100 000 1112111111 3679999999876
Q ss_pred hhccCCcCCCCchhHHHHHHHHHHhhcccc--------CCCCeEEEeccCCCCC---CCccCCCCCcccccccCCCCCH-
Q 003000 498 GRERGLIKGSGGQERDATLNQLLVCLDGFE--------GRGNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKPGL- 565 (859)
Q Consensus 498 ~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--------~~~~vlVIatTN~~~~---LdpaLlrpgRfd~~I~~~~Pd~- 565 (859)
.+. +.+.|+..|+... .....++|+|||.+.. +.+++++ ||...|.+++|+.
T Consensus 122 ~~~--------------~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ 185 (500)
T 3nbx_X 122 GPA--------------ILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDK 185 (500)
T ss_dssp CHH--------------HHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCH
T ss_pred cHH--------------HHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhh
Confidence 543 6777877775311 1112245777775322 3458888 9999999999987
Q ss_pred HHHHHHHHHHHcc-------------------------CCCCCcccHHHHHhh---------CCCCCHHHHHHHHHHHHH
Q 003000 566 IGRMEILKVHARK-------------------------KPMADDVDYLAVASM---------TDGMVGAELANIVEVAAI 611 (859)
Q Consensus 566 ~eR~~Il~~~l~~-------------------------~~~~~d~dl~~lA~~---------t~G~sgadL~~Lv~~A~~ 611 (859)
+++..|+..+... ..+.++ -...++.. ..|.|++.+..+++.|..
T Consensus 186 ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A 264 (500)
T 3nbx_X 186 ANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQA 264 (500)
T ss_dssp HHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHH
Confidence 6788888765421 111111 12223322 358899999999999999
Q ss_pred HHHHhCCCccCHHHHHHHHH
Q 003000 612 NMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 612 ~A~~~~~~~It~edl~~Al~ 631 (859)
.|...++..|+.+|+. ++.
T Consensus 265 ~A~l~gr~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 265 SAFFSGRSAVAPVDLI-LLK 283 (500)
T ss_dssp HHHHTTCSBCCGGGGG-GGG
T ss_pred HHhhcCCccccchHHH-HHH
Confidence 9999999999999998 443
No 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=6.3e-12 Score=136.21 Aligned_cols=201 Identities=24% Similarity=0.251 Sum_probs=137.1
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccc-----ccEEEeeccc
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISASQ 461 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~-----~~~~~is~s~ 461 (859)
.....|+++.|....+..+...+..- . ..+++|+||+|+|||+++++++..+. ..++.+++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG-----------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT-----------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 45567888888888877776655421 1 22499999999999999999998763 3466676654
Q ss_pred cchhhhcccchhhhhHHHHHH------hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE
Q 003000 462 FVEIYVGVGASRVRSLYQEAK------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 535 (859)
Q Consensus 462 ~~~~~~g~~~~~l~~lfe~a~------~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI 535 (859)
.... ..++..+.... ...+.+++|||++.+... ..+.|+..++. ...++.+|
T Consensus 87 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~~i 144 (327)
T 1iqp_A 87 ERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD--------------AQQALRRTMEM--FSSNVRFI 144 (327)
T ss_dssp HHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH--------------HHHHHHHHHHH--TTTTEEEE
T ss_pred cCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH--------------HHHHHHHHHHh--cCCCCeEE
Confidence 3211 11122222111 134779999999988543 56667777764 34577888
Q ss_pred eccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003000 536 ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMM 614 (859)
Q Consensus 536 atTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~ 614 (859)
++||.++.+++.+.+ |+. .+.|++|+.++...++...+...+.. ++..+..++..+.| +.+.+.++++.+..
T Consensus 145 ~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~--- 217 (327)
T 1iqp_A 145 LSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA--- 217 (327)
T ss_dssp EEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT---
T ss_pred EEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh---
Confidence 889999999999988 776 78999999999999999888765443 23345677777765 55555566654432
Q ss_pred HhCCCccCHHHHHHHH
Q 003000 615 RDGRTEITTDDLLQAA 630 (859)
Q Consensus 615 ~~~~~~It~edl~~Al 630 (859)
....|+.+++..++
T Consensus 218 --~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 218 --LDKKITDENVFMVA 231 (327)
T ss_dssp --TCSEECHHHHHHHT
T ss_pred --cCCCCCHHHHHHHH
Confidence 22368888887653
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.34 E-value=2.7e-12 Score=158.37 Aligned_cols=203 Identities=26% Similarity=0.384 Sum_probs=128.3
Q ss_pred cccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEee
Q 003000 389 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 458 (859)
Q Consensus 389 ~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is 458 (859)
...|+++.|.+..+..+.++.. . ..+++++|+||||||||++++++|+.+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 3456777777765544444332 1 223468999999999999999999987 77899999
Q ss_pred ccccc--hhhhcccchhhhhHHHHHHhc-CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE
Q 003000 459 ASQFV--EIYVGVGASRVRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 535 (859)
Q Consensus 459 ~s~~~--~~~~g~~~~~l~~lfe~a~~~-~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI 535 (859)
++.+. ..|.|.....+..+|..+... .|+|+||||++.+.+.... .++.. ..+.|...++ ..++.+|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~---~~~~L~~~l~----~~~i~~I 303 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVD---AGNMLKPALA----RGELRLI 303 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHH---HHHHHHHHHh----CCCeEEE
Confidence 88876 346676677788888888765 6889999999998654211 11111 3333433333 4577889
Q ss_pred eccCCCC----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccC----CCC-CcccHHHHHhh-----CCCCCHHH
Q 003000 536 ASTNRPD----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PMA-DDVDYLAVASM-----TDGMVGAE 601 (859)
Q Consensus 536 atTN~~~----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~----~~~-~d~dl~~lA~~-----t~G~sgad 601 (859)
++||.++ .+|++|.+ ||+. |.|++|+.+++..|++.++... .+. .+..+..++.. +.++.+..
T Consensus 304 ~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~k 380 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDK 380 (854)
T ss_dssp EEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHH
T ss_pred EecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHH
Confidence 8888775 47999999 9985 9999999999999998766432 111 22224444443 45677888
Q ss_pred HHHHHHHHHHHHHHh
Q 003000 602 LANIVEVAAINMMRD 616 (859)
Q Consensus 602 L~~Lv~~A~~~A~~~ 616 (859)
...++.+|+..+...
T Consensus 381 ai~lldea~a~~~~~ 395 (854)
T 1qvr_A 381 AIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 889999988766554
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.30 E-value=1.2e-12 Score=129.42 Aligned_cols=151 Identities=30% Similarity=0.435 Sum_probs=99.4
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc----------cccEEEeec
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISA 459 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el----------~~~~~~is~ 459 (859)
..|++..|....+..+.+... . ..+.+++|+||+|||||++++.++..+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred cccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 356677777665544433321 1 224579999999999999999999886 667777777
Q ss_pred cccchh--hhcccchhhhhHHHHHHhc-CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEe
Q 003000 460 SQFVEI--YVGVGASRVRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 536 (859)
Q Consensus 460 s~~~~~--~~g~~~~~l~~lfe~a~~~-~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIa 536 (859)
+.+... +.+.....+..++..+... .|.+++|||++.+...+.. ..+... .++.|...++ ..++++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~---~~~~l~~~~~----~~~~~ii~ 157 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALD---AGNILKPMLA----RGELRCIG 157 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCC---THHHHHHHHH----TTCSCEEE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchH---HHHHHHHHHh----cCCeeEEE
Confidence 665422 3333334456666666554 5789999999998643221 011111 3333333333 36788999
Q ss_pred ccCCCC-----CCCccCCCCCcccccccCCCCC
Q 003000 537 STNRPD-----ILDPALVRPGRFDRKIFIPKPG 564 (859)
Q Consensus 537 tTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd 564 (859)
+||.+. .+++++++ ||+. |.+++|+
T Consensus 158 ~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 158 ATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 998775 58999999 9995 9999885
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=1e-11 Score=136.85 Aligned_cols=206 Identities=18% Similarity=0.214 Sum_probs=131.8
Q ss_pred CccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccc-----cEEEeeccc
Q 003000 387 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISASQ 461 (859)
Q Consensus 387 ~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~-----~~~~is~s~ 461 (859)
.....|++..|...++..+...+.. -.+|. ++|+|||||||||+++++|+.+.. .+..++.++
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 3455677777877776665554431 12333 899999999999999999998632 345555443
Q ss_pred cchhhhcccchhhhhHHHHHHh------cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE
Q 003000 462 FVEIYVGVGASRVRSLYQEAKD------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 535 (859)
Q Consensus 462 ~~~~~~g~~~~~l~~lfe~a~~------~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI 535 (859)
.. +...++..+..... ..+.+++|||+|.+... ..+.|+..++. ...++.+|
T Consensus 87 ~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~~i 144 (340)
T 1sxj_C 87 DR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--------------AQNALRRVIER--YTKNTRFC 144 (340)
T ss_dssp CC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------------HHHHHHHHHHH--TTTTEEEE
T ss_pred cc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHhc--CCCCeEEE
Confidence 21 11223333333221 23679999999987543 45667777774 34567778
Q ss_pred eccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 003000 536 ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMM 614 (859)
Q Consensus 536 atTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~ 614 (859)
.+||.+..+.+++++ |+. .+.|++++.++...++...+....+. ++..+..++..+.| ..+.+.++++.+...+.
T Consensus 145 l~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~ 220 (340)
T 1sxj_C 145 VLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLD 220 (340)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTC
T ss_pred EEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcC
Confidence 888999999999998 775 78899999999999998887543332 23345667777655 33444455544432221
Q ss_pred HhCCCccCHHHHHHHH
Q 003000 615 RDGRTEITTDDLLQAA 630 (859)
Q Consensus 615 ~~~~~~It~edl~~Al 630 (859)
..+...|+.+++..++
T Consensus 221 ~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 221 NPDEDEISDDVIYECC 236 (340)
T ss_dssp SSSCCCBCHHHHHHHT
T ss_pred CcccccccHHHHHHHh
Confidence 1123369998887764
No 76
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.28 E-value=7.3e-12 Score=132.82 Aligned_cols=205 Identities=20% Similarity=0.202 Sum_probs=118.9
Q ss_pred ccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhccc---ccEEEeeccccchh-
Q 003000 390 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEI- 465 (859)
Q Consensus 390 ~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~---~~~~~is~s~~~~~- 465 (859)
..|+.+.|....+..+.+.+..+. ..+.+++|+||||||||++|++|+..+. .+++.++++.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 457777787777766665554332 1235699999999999999999998774 68999999876432
Q ss_pred ----hhcccch-------hhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc--------
Q 003000 466 ----YVGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-------- 526 (859)
Q Consensus 466 ----~~g~~~~-------~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~-------- 526 (859)
.+|.... .....+.. ..++++||||++.+... ....|+..++..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMM--------------VQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHH--------------HHHHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHH--------------HHHHHHHHHHhCCeecCCCc
Confidence 1221110 01122332 24579999999988643 555666666532
Q ss_pred -cCCCCeEEEeccCCC-------CCCCccCCCCCcccc-cccCCCCCH--HHHHHHHHHHHcc----CCCC-----Cccc
Q 003000 527 -EGRGNVITIASTNRP-------DILDPALVRPGRFDR-KIFIPKPGL--IGRMEILKVHARK----KPMA-----DDVD 586 (859)
Q Consensus 527 -~~~~~vlVIatTN~~-------~~LdpaLlrpgRfd~-~I~~~~Pd~--~eR~~Il~~~l~~----~~~~-----~d~d 586 (859)
....++.||+|||.+ ..+++.|.+ ||+. .|.+|++.. ++...+++.++.. .... .+..
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 112468899999874 246788877 8863 455555543 3444455444322 2221 1222
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003000 587 YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 626 (859)
Q Consensus 587 l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl 626 (859)
+..+....-....++|.++++.+...+ ....|+.+|+
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 344444432345678888888877554 2335666555
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=3.6e-11 Score=132.42 Aligned_cols=196 Identities=16% Similarity=0.206 Sum_probs=122.6
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc-cccEEEeec----
Q 003000 385 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GVNFFSISA---- 459 (859)
Q Consensus 385 ~~~~~~~f~~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el-~~~~~~is~---- 459 (859)
++.....|+++.|....+..+..++. . .-..|. ++|+||||+||||+++++++.+ +...+.+..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 34456678888887777655544321 0 112344 9999999999999999999954 222111100
Q ss_pred ----------------cccchhh---hcccc-hhhhhHHHHHH--------------hcCCcEEEhhhhHhhhhccCCcC
Q 003000 460 ----------------SQFVEIY---VGVGA-SRVRSLYQEAK--------------DNAPSVVFIDELDAVGRERGLIK 505 (859)
Q Consensus 460 ----------------s~~~~~~---~g~~~-~~l~~lfe~a~--------------~~~p~Il~iDEId~l~~~r~~~~ 505 (859)
..+.... .+... ..++..++.+. ...|.+++|||++.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~----- 149 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD----- 149 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH-----
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH-----
Confidence 0000000 00000 01333333332 225679999999885332
Q ss_pred CCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-C-
Q 003000 506 GSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-D- 583 (859)
Q Consensus 506 ~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~- 583 (859)
..+.|+..++.. ..++.+|.+||.++.+.+.+.+ |+ ..+.|++|+.+++..++...+...++. +
T Consensus 150 ---------~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 150 ---------AQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp ---------HHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred ---------HHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 456677767643 3467888888999999999988 77 689999999999999999887654432 2
Q ss_pred cccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 003000 584 DVDYLAVASMTDGMVGAELANIVEVAAI 611 (859)
Q Consensus 584 d~dl~~lA~~t~G~sgadL~~Lv~~A~~ 611 (859)
+..+..++..+.| +.+++.++++.+..
T Consensus 216 ~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 216 KDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp SHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 3446778887765 55556667665553
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.18 E-value=4.2e-11 Score=130.29 Aligned_cols=201 Identities=19% Similarity=0.179 Sum_probs=121.2
Q ss_pred ccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----h
Q 003000 395 VAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----Y 466 (859)
Q Consensus 395 ~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~ 466 (859)
+.|....+..+.+.+..+. ..+.+++|+||||||||++|++|+... +.+++.++|+.+... .
T Consensus 4 iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~l 73 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESEL 73 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHH
T ss_pred cEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHh
Confidence 4455556555555544332 224569999999999999999999854 678999999876442 2
Q ss_pred hcccch-------hhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---------CCC
Q 003000 467 VGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRG 530 (859)
Q Consensus 467 ~g~~~~-------~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~---------~~~ 530 (859)
+|...+ .....|+.+ .++++|||||+.+... ....|+..++... ...
T Consensus 74 fg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 74 FGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPL--------------MQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp TCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHH--------------HHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred cCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHH--------------HHHHHHHHHhcCEeeecCCcccccC
Confidence 222110 122345544 3469999999998543 5566776666422 124
Q ss_pred CeEEEeccCCC-------CCCCccCCCCCccc-ccccCCCCC--HHHHHHHHHHHHcc----CC----CCCcccHHHHHh
Q 003000 531 NVITIASTNRP-------DILDPALVRPGRFD-RKIFIPKPG--LIGRMEILKVHARK----KP----MADDVDYLAVAS 592 (859)
Q Consensus 531 ~vlVIatTN~~-------~~LdpaLlrpgRfd-~~I~~~~Pd--~~eR~~Il~~~l~~----~~----~~~d~dl~~lA~ 592 (859)
++.||++||.. ..+++.|.+ ||. ..|.+|++. .++...++..++.. .. ...+..+..+..
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 68899999875 235566666 664 224555554 34455566655432 11 112222455555
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003000 593 MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 627 (859)
Q Consensus 593 ~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~ 627 (859)
..-....++|.++++.+...+ ....|+.+|+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 552335678888888876543 33467776663
No 79
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=100.69 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 561 PKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 561 ~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
|+|+.++|.+||+.++++.++..++|+..||..|.||||+||.++|++|+..|.+++...|+.+||..|+..+...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999888899999999999999999999999999999999999999999999999987643
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.13 E-value=7.3e-11 Score=140.20 Aligned_cols=133 Identities=20% Similarity=0.330 Sum_probs=89.2
Q ss_pred cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccc-------------------cCCCCeEEEeccCCC--C
Q 003000 484 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-------------------EGRGNVITIASTNRP--D 542 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~-------------------~~~~~vlVIatTN~~--~ 542 (859)
..++++||||++.+.+. .++.|+..|+.. .-..++.||++||.. +
T Consensus 200 a~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 200 AHKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp TTTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred cCCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 35679999999997543 566777666531 112468899999976 6
Q ss_pred CCCccCCCCCccc---ccccCCC--C-CHHHHHHHHHHHHcc------CCCCCcccHHHHHhh---CCCC------CHHH
Q 003000 543 ILDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKVHARK------KPMADDVDYLAVASM---TDGM------VGAE 601 (859)
Q Consensus 543 ~LdpaLlrpgRfd---~~I~~~~--P-d~~eR~~Il~~~l~~------~~~~~d~dl~~lA~~---t~G~------sgad 601 (859)
.++|+|++ ||+ ..+.|+. + +......+++..... .....+.-+..|... ..|. +.++
T Consensus 266 ~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~ 343 (604)
T 3k1j_A 266 KMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRD 343 (604)
T ss_dssp HSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHH
T ss_pred hcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHH
Confidence 79999999 986 4555543 2 233455555433321 111122223444432 2553 7999
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003000 602 LANIVEVAAINMMRDGRTEITTDDLLQAAQI 632 (859)
Q Consensus 602 L~~Lv~~A~~~A~~~~~~~It~edl~~Al~~ 632 (859)
+.++++.|...|...++..|+.+|+.+|+..
T Consensus 344 l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 344 LGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 9999999999998889999999999999854
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.12 E-value=1.6e-10 Score=127.21 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=109.7
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhccccc------------------------EEEeeccccchhhhcccchhhhhHHH
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------------FFSISASQFVEIYVGVGASRVRSLYQ 479 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~~------------------------~~~is~s~~~~~~~g~~~~~l~~lfe 479 (859)
+.+..++|+||+|+|||++++++|..+... +..++.... .-..+...++.+++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHH
Confidence 456779999999999999999999876432 222222100 00011233556666
Q ss_pred HHHhc----CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCccc
Q 003000 480 EAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 555 (859)
Q Consensus 480 ~a~~~----~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd 555 (859)
.+... .+.|++|||+|.+... ..+.|+..++ .+..++++|.+||.++.+.|.+++ |+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lE--ep~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLE--EPPAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHT--SCCTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhc--CCCCCeEEEEEeCChHhCcHHHhh--cce
Confidence 65432 3679999999998543 6788888888 455678888889999999999998 664
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 003000 556 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVA 609 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A 609 (859)
.+.|++|+.++...++.... .+ ++..+..++..+.| +.+.+.++++.+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred -eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999999998775 22 33345667777765 444444555443
No 82
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=101.62 Aligned_cols=78 Identities=24% Similarity=0.420 Sum_probs=73.0
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 559 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 559 ~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
.-.+||.++|.+||+.++++.++..++|+..||..|.||||+||.++|++|+..|.+++...|+.+||..|+.++..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 456899999999999999999888899999999999999999999999999999999998999999999999988654
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.05 E-value=2.1e-09 Score=120.37 Aligned_cols=223 Identities=16% Similarity=0.135 Sum_probs=138.0
Q ss_pred cCccCchHHHHHHHHHH-HhcccchhhhccCC-ccCceEEE--ECCCCCCchhHHHhhhhcc---------cccEEEeec
Q 003000 393 SDVAGLGKIRLELEEIV-KFFTHGEMYRRRGV-RIPGGILL--CGPPGVGKTLLAKAVAGEA---------GVNFFSISA 459 (859)
Q Consensus 393 ~~~~gl~~~v~~l~~~v-~~~~~~~~~~~~gl-~~~~gvLL--~GPpGtGKTtLakaLA~el---------~~~~~~is~ 459 (859)
+...|-+..+..+.... ..... +. ..+..++| +||+|+|||+|++.++..+ +..++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~-------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS-------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT-------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhc-------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 44566666665555554 32210 10 12345888 9999999999999999876 345677776
Q ss_pred cccchh---------hhccc-------chh-hhhHHHHHH-hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHH
Q 003000 460 SQFVEI---------YVGVG-------ASR-VRSLYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 521 (859)
Q Consensus 460 s~~~~~---------~~g~~-------~~~-l~~lfe~a~-~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~ 521 (859)
...... .++.. ... +..+.+... ...|.+|+|||++.+..... . ....+..|+.
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~---~~~~l~~l~~ 166 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----I---AAEDLYTLLR 166 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----S---CHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----c---chHHHHHHHH
Confidence 432111 11110 111 122222222 24577999999999854210 0 1125555555
Q ss_pred hhcccc-CC--CCeEEEeccCCCC---CCC---ccCCCCCcccccccCCCCCHHHHHHHHHHHHccCC---CCCcccHHH
Q 003000 522 CLDGFE-GR--GNVITIASTNRPD---ILD---PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP---MADDVDYLA 589 (859)
Q Consensus 522 ~ld~~~-~~--~~vlVIatTN~~~---~Ld---paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~---~~~d~dl~~ 589 (859)
.+.... .. .++.||++||.++ .++ +.+.+ +|...+.+++++.++..+++..++.... ..++..+..
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 554332 13 6788888887665 244 55555 5555599999999999999987764321 123334566
Q ss_pred HHhhCC------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003000 590 VASMTD------GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 590 lA~~t~------G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~ 633 (859)
++..+. | .++.+..++..|...+...+...++.+++..++...
T Consensus 245 i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 245 ISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 777777 5 466677888888888877788889999998887654
No 84
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.03 E-value=2.1e-10 Score=110.73 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=64.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 503 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~ 503 (859)
..++|+||||||||++|++|+... +.+++ ++++.+... ......|+.+ ..+++||||+|.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~~--- 91 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTRE--- 91 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCHH---
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCHH---
Confidence 459999999999999999999876 67888 998875443 1223345444 4568999999998654
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC
Q 003000 504 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 541 (859)
Q Consensus 504 ~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~ 541 (859)
....|+..|. ....++.+|++||.+
T Consensus 92 -----------~q~~Ll~~l~--~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 92 -----------QQYHLVQLQS--QEHRPFRLIGIGDTS 116 (145)
T ss_dssp -----------HHHHHHHHHH--SSSCSSCEEEEESSC
T ss_pred -----------HHHHHHHHHh--hcCCCEEEEEECCcC
Confidence 4556666664 334567888888864
No 85
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.01 E-value=7.7e-10 Score=98.17 Aligned_cols=73 Identities=23% Similarity=0.404 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 564 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 564 d~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
|.++|.+||+.++++.++..++|+..||..|+||||+||.++|++|+..|.+++...|+.+||..|+.++..|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 5689999999999999998999999999999999999999999999999999999999999999999999887
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.2e-09 Score=118.85 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=96.9
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc------cccEEEeeccccchhhhcccchhhhhHHHHHHhcC----CcEEEhhhhH
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA------GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELD 495 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el------~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~----p~Il~iDEId 495 (859)
+..++|+||||+|||++++++|..+ .+.+..++.+.. ..+...++.+++.+...+ ..|++|||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 3468999999999999999999863 356666665320 112234567777775433 3699999999
Q ss_pred hhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCCCHHHHHHHHHHH
Q 003000 496 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 575 (859)
Q Consensus 496 ~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~ 575 (859)
.+... ..+.|+..|+ .+..++++|.+||.+..+.|++++ | ++.|++|+.++....+...
T Consensus 93 ~lt~~--------------a~naLLk~LE--ep~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 93 RMTQQ--------------AANAFLKALE--EPPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp GBCHH--------------HHHHTHHHHH--SCCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHH
T ss_pred HhCHH--------------HHHHHHHHHh--CCCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHH
Confidence 98644 6788999998 456788888888889999999999 7 8999999999999999877
Q ss_pred H
Q 003000 576 A 576 (859)
Q Consensus 576 l 576 (859)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 6
No 87
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.93 E-value=9e-10 Score=106.15 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=75.5
Q ss_pred cCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhh
Q 003000 396 AGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVR 475 (859)
Q Consensus 396 ~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~ 475 (859)
.|....+..+.+.+..+. ..+.+++|+||||||||++|++|+.... +++.++++.+...+ ..
T Consensus 7 iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~ 68 (143)
T 3co5_A 7 LGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PM 68 (143)
T ss_dssp -CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HH
T ss_pred eeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hh
Confidence 455556655555554332 1234699999999999999999999888 89999988755432 23
Q ss_pred hHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC
Q 003000 476 SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 541 (859)
Q Consensus 476 ~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~ 541 (859)
.+++.+ .++++||||++.+... ....|+..++... ..++.+|++||.+
T Consensus 69 ~~~~~a---~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 69 ELLQKA---EGGVLYVGDIAQYSRN--------------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHT---TTSEEEEEECTTCCHH--------------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hHHHhC---CCCeEEEeChHHCCHH--------------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 345543 3579999999988554 4555666665432 4568888888864
No 88
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.83 E-value=5.2e-09 Score=91.54 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 564 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 564 d~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
|.++|.+||+.++++.++..++|+..||..|.||||+||.++|++|+..|.+++...|+.+||..|+..+..+
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6789999999999999888899999999999999999999999999999999998899999999999988655
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.78 E-value=6.9e-09 Score=133.73 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=101.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcc-c----------chhhhc------cCCc----------cCce--EEEECCCC
Q 003000 386 RGVDVKFSDVAGLGKIRLELEEIVKFFT-H----------GEMYRR------RGVR----------IPGG--ILLCGPPG 436 (859)
Q Consensus 386 ~~~~~~f~~~~gl~~~v~~l~~~v~~~~-~----------~~~~~~------~gl~----------~~~g--vLL~GPpG 436 (859)
......|.++.|+...+..+.+.+.+.- . +..+.. .|.. +|+| ++|+||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 4556889999999999888877666421 1 233443 3443 5566 99999999
Q ss_pred CCchhHHHhhhhcc---cccEEEeeccccc------------hhhhcc----cchhhhhHHHHHHhcCCcEEEhhhhHhh
Q 003000 437 VGKTLLAKAVAGEA---GVNFFSISASQFV------------EIYVGV----GASRVRSLYQEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 437 tGKTtLakaLA~el---~~~~~~is~s~~~------------~~~~g~----~~~~l~~lfe~a~~~~p~Il~iDEId~l 497 (859)
||||+||++++.+. +-+.+.|+..+.. +.+++. ++..++.+|..++...||++++|+++++
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999866 4455556655533 334455 5667788898899999999999999999
Q ss_pred hhccC---CcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC
Q 003000 498 GRERG---LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 541 (859)
Q Consensus 498 ~~~r~---~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~ 541 (859)
.+.+. ..++....-...+++++|..|++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 87743 111111123334789999999988778888888 66764
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.75 E-value=4.3e-09 Score=141.00 Aligned_cols=139 Identities=23% Similarity=0.358 Sum_probs=94.0
Q ss_pred cCceEEEECCCCCCchhHH-HhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHH---------------hcCCcE
Q 003000 425 IPGGILLCGPPGVGKTLLA-KAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK---------------DNAPSV 488 (859)
Q Consensus 425 ~~~gvLL~GPpGtGKTtLa-kaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~---------------~~~p~I 488 (859)
..+++||+||||||||++| +.++...+..+..++++..... ..+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 3467999999999999999 5555555677777877654322 12222222210 122469
Q ss_pred EEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCC--------CCeEEEeccCCCC-----CCCccCCCCCccc
Q 003000 489 VFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR--------GNVITIASTNRPD-----ILDPALVRPGRFD 555 (859)
Q Consensus 489 l~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~--------~~vlVIatTN~~~-----~LdpaLlrpgRfd 555 (859)
+||||++....++ .|.+.....+.+++. ..++... .++.+|+|+|++. .|+|+|+| ||
T Consensus 1340 lFiDEinmp~~d~-----yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDK-----YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEEETTTCSCCCS-----SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred EEecccccccccc-----cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 9999998643321 233444455555553 2222211 3589999999994 79999999 88
Q ss_pred ccccCCCCCHHHHHHHHHHHHcc
Q 003000 556 RKIFIPKPGLIGRMEILKVHARK 578 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~~~l~~ 578 (859)
.+|+++.|+.+++..|+..++..
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999988754
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.69 E-value=2.6e-08 Score=99.03 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=60.2
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhcc----cccEEEeeccccchhhhcccch-hhhhHHHHHHhcCCcEEEhhhhHhhh
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVG 498 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el----~~~~~~is~s~~~~~~~g~~~~-~l~~lfe~a~~~~p~Il~iDEId~l~ 498 (859)
..+.+++|+||||||||||++++++.+ +..+..+++.++...+...... ....+++.. ..|.+++|||++...
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER 113 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc
Confidence 335679999999999999999999977 4455667766655432211000 011222222 357899999997432
Q ss_pred hccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC
Q 003000 499 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 542 (859)
Q Consensus 499 ~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~ 542 (859)
. .......+..++... .. .+..+|.+||.+.
T Consensus 114 ~---------~~~~~~~l~~ll~~~---~~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 114 L---------SDWQRELISYIITYR---YN-NLKSTIITTNYSL 144 (180)
T ss_dssp C---------CHHHHHHHHHHHHHH---HH-TTCEEEEECCCCS
T ss_pred C---------CHHHHHHHHHHHHHH---HH-cCCCEEEEcCCCh
Confidence 1 122233444444332 21 3446666777653
No 92
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.68 E-value=5.7e-09 Score=91.23 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 566 IGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 566 ~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
++|.+||+.++++.++..++|+..||..|.||||+||.++|++|+..|.+++...|+.+||..|+.++..+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~ 71 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKT 71 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC-
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcC
Confidence 46899999999998888889999999999999999999999999999999999999999999999887554
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.59 E-value=2.5e-08 Score=97.03 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=42.7
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 498 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~ 498 (859)
...++|+||||+|||||++++++.+ +...++++..++... .+ ...|.+++|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------~~-----~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------DA-----AFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------GG-----GGGCSEEEEESTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------HH-----HhCCCEEEEeCccccC
Confidence 3459999999999999999999977 555666766554322 01 2347899999997653
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.58 E-value=2.6e-07 Score=104.88 Aligned_cols=187 Identities=15% Similarity=0.102 Sum_probs=112.6
Q ss_pred eEEEECCCCCCchhHHHhh-hhcccccEEEeecc--c---cchhhhcccchhh-hhHHHHHHhcCCcEEEhhhhHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAV-AGEAGVNFFSISAS--Q---FVEIYVGVGASRV-RSLYQEAKDNAPSVVFIDELDAVGRE 500 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaL-A~el~~~~~~is~s--~---~~~~~~g~~~~~l-~~lfe~a~~~~p~Il~iDEId~l~~~ 500 (859)
++||.|+||| ||+|++++ +..+.... ++... . +.....+.+...+ ...+..+ ..+++|+|||+.+...
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LA---dgGvl~lDEIn~~~~~ 315 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGWALRAGAAVLA---DGGILAVDHLEGAPEP 315 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSEEEEECHHHHT---TTSEEEEECCTTCCHH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCcccCCCeeEEc---CCCeeehHhhhhCCHH
Confidence 5999999999 99999999 66553322 22211 0 0000000000000 1112222 2469999999987554
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhccc-------cCCCCeEEEeccCCCC-----------CCCccCCCCCcccccc-cCC
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGF-------EGRGNVITIASTNRPD-----------ILDPALVRPGRFDRKI-FIP 561 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~-------~~~~~vlVIatTN~~~-----------~LdpaLlrpgRfd~~I-~~~ 561 (859)
++..|+..|+.- .-+.++.||+|+|... .|++++++ |||..+ .++
T Consensus 316 --------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d 379 (506)
T 3f8t_A 316 --------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGV 379 (506)
T ss_dssp --------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC
T ss_pred --------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecC
Confidence 677777777631 1245789999999865 67889999 998754 344
Q ss_pred CCCHHH-------------HHHHHHHHHc-c--CCCCCcccHHHHH-----------h------hCCCCCHHHHHHHHHH
Q 003000 562 KPGLIG-------------RMEILKVHAR-K--KPMADDVDYLAVA-----------S------MTDGMVGAELANIVEV 608 (859)
Q Consensus 562 ~Pd~~e-------------R~~Il~~~l~-~--~~~~~d~dl~~lA-----------~------~t~G~sgadL~~Lv~~ 608 (859)
.|+.+. ..+.+ .+++ . .+...+.....+. . ..-|.|++.+..|++-
T Consensus 380 ~pd~e~d~e~~~~~ls~e~L~~yi-~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRl 458 (506)
T 3f8t_A 380 DPRPGEPEEQDTEVPSYTLLRRYL-LYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERL 458 (506)
T ss_dssp --------------CCHHHHHHHH-HHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHH
T ss_pred CCChhHhhcccCCCCCHHHHHHHH-HHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHH
Confidence 454332 22222 2223 1 1111111111110 0 2458899999999999
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 003000 609 AAINMMRDGRTEITTDDLLQAAQIEERG 636 (859)
Q Consensus 609 A~~~A~~~~~~~It~edl~~Al~~~~~g 636 (859)
|...|..+++..|+.+|+..|+..+...
T Consensus 459 A~A~A~L~gR~~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 459 AKAHARMRLSDDVEPEDVDIAAELVDWY 486 (506)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999877554
No 95
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.40 E-value=1e-07 Score=103.64 Aligned_cols=117 Identities=22% Similarity=0.232 Sum_probs=66.3
Q ss_pred ceEEEECCCCCCchhHHHhhhhccccc--EEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVN--FFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 504 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~--~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~ 504 (859)
..++|+||||||||+|+..+|...+.+ |+.+...+....+.......+..+++.+.... +++||+++.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 338999999999999999999765433 44442233333332222233344555555443 99999999885432211
Q ss_pred CCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccC
Q 003000 505 KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPAL 548 (859)
Q Consensus 505 ~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaL 548 (859)
...| . ....+.+++..|.++....++.+|+++| +...++++
T Consensus 202 s~~G-~-v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 202 TTSG-G-ISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccc-h-HHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 1111 1 1224555666665555556788888888 45555554
No 96
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.38 E-value=1.4e-06 Score=97.74 Aligned_cols=179 Identities=21% Similarity=0.231 Sum_probs=106.3
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh-----hhcccch-------hhhhHHHHHHhcCCcEEEhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS-------RVRSLYQEAKDNAPSVVFID 492 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~-------~l~~lfe~a~~~~p~Il~iD 492 (859)
.++|+|++|||||+++++|.... +.+|+.++|+.+... .+|...+ ....+|+.+. .+++|||
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfld 238 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLD 238 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEE
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCC---CcEEEEc
Confidence 47999999999999999998755 478999999876543 2232111 1123555543 4699999
Q ss_pred hhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc---------CCCCeEEEeccCCCC-------CCCccCCCCCcccc
Q 003000 493 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------ILDPALVRPGRFDR 556 (859)
Q Consensus 493 EId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~---------~~~~vlVIatTN~~~-------~LdpaLlrpgRfd~ 556 (859)
||+.+... ....|+..++... ...++.||++||..- .+.+.|.. |+.
T Consensus 239 ei~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~- 301 (387)
T 1ny5_A 239 EIGELSLE--------------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLG- 301 (387)
T ss_dssp SGGGCCHH--------------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-
T ss_pred ChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-
Confidence 99998654 6677777666411 123688999998631 22333332 332
Q ss_pred cccCCCCCHHHH----HHHHHHHHcc----CCCC-Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003000 557 KIFIPKPGLIGR----MEILKVHARK----KPMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 624 (859)
Q Consensus 557 ~I~~~~Pd~~eR----~~Il~~~l~~----~~~~-~d~d---l~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~e 624 (859)
.+.+..|...+| ..++..++.. .... ..++ +..+..+.--...++|.++++.|...+ ....|+.+
T Consensus 302 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~ 378 (387)
T 1ny5_A 302 VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRG 378 (387)
T ss_dssp TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHH
T ss_pred CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHH
Confidence 233444555544 3344444432 2211 1233 233333332223468889998887654 34579999
Q ss_pred HHHHH
Q 003000 625 DLLQA 629 (859)
Q Consensus 625 dl~~A 629 (859)
|+...
T Consensus 379 ~l~~~ 383 (387)
T 1ny5_A 379 ELSCL 383 (387)
T ss_dssp HHHHH
T ss_pred HCcHh
Confidence 88654
No 97
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.35 E-value=2.2e-07 Score=103.86 Aligned_cols=119 Identities=20% Similarity=0.233 Sum_probs=72.8
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhh-c
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR-E 500 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~-~ 500 (859)
++..+..++|+||||+|||||+++|++..+..++.+.... ..+ ...+..+| ...++++|+++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~--~~~----~~~lg~~~------q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL--DRL----NFELGVAI------DQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT--TTH----HHHHGGGT------TCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc--hhH----HHHHHHhc------chhHHHHHHHHHHHHHH
Confidence 3344445999999999999999999998765544332211 000 00112222 234679999988764 2
Q ss_pred cCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCC
Q 003000 501 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 562 (859)
Q Consensus 501 r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~ 562 (859)
+.... + ... .....+...+++ ++.|+.+||+++.+ +++++|||++..++...
T Consensus 233 r~l~~--~-~~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPS--G-QGI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCC--C-SHH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhccc--c-Ccc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22111 1 110 012333333443 45678889999999 79999999999888765
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.28 E-value=1.9e-07 Score=94.37 Aligned_cols=70 Identities=26% Similarity=0.327 Sum_probs=47.2
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhhhcc-cchhhhhHHHHHHhcCCcEEEhhhhHhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~-~~~~l~~lfe~a~~~~p~Il~iDEId~l 497 (859)
+.+++|+||||||||+|++++++.+ +.+++.+++.++...+... ....+..+++.... +++|+|||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 3679999999999999999999877 5677778877655432211 11112333444332 459999999654
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.23 E-value=4.2e-06 Score=90.95 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=96.6
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc-----h--hh-------h--------------cc---------
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-----E--IY-------V--------------GV--------- 469 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~-----~--~~-------~--------------g~--------- 469 (859)
+.++|+||+|+|||+|++.++..++...+.+++.... . .. + +.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 3689999999999999999999876666777765420 0 00 0 00
Q ss_pred ---------cchhhhhHHHHHHhc--CCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc
Q 003000 470 ---------GASRVRSLYQEAKDN--APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 538 (859)
Q Consensus 470 ---------~~~~l~~lfe~a~~~--~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT 538 (859)
....+..+++..... .|.+|+|||++.+..... ......+..+. +. ..++.+|.++
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~-------~~~~~~l~~~~---~~---~~~~~~i~~g 177 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG-------VNLLPALAYAY---DN---LKRIKFIMSG 177 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT-------CCCHHHHHHHH---HH---CTTEEEEEEE
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc-------hhHHHHHHHHH---Hc---CCCeEEEEEc
Confidence 011234455555443 388999999998854100 01111233333 21 1355566555
Q ss_pred CCCCC---------CCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHH
Q 003000 539 NRPDI---------LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVE 607 (859)
Q Consensus 539 N~~~~---------LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sgadL~~Lv~ 607 (859)
+.... ....+ .||+...+.+++++.++..+++...+.......+. ...+...|.|+.. -+..++.
T Consensus 178 ~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHH-HHHHHHH
T ss_pred CchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHH-HHHHHHH
Confidence 43221 11222 24666789999999999999998876533322222 3778888888654 3544443
No 100
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.15 E-value=1.1e-05 Score=87.43 Aligned_cols=165 Identities=20% Similarity=0.210 Sum_probs=92.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccccc------------hh---hhcc-----------------c----
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV------------EI---YVGV-----------------G---- 470 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~------------~~---~~g~-----------------~---- 470 (859)
+.++|+||+|+|||+|++.++...+ .+.+++.... .. .++. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 4689999999999999999998875 5555554321 00 0000 0
Q ss_pred chhhhhHHHHHH----hcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC---C-
Q 003000 471 ASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP---D- 542 (859)
Q Consensus 471 ~~~l~~lfe~a~----~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~---~- 542 (859)
...+..+++... ...|.+|+|||++.+.... ...... .+..|-..++. ..++.+|.++... .
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~~~~~~---~~~~L~~~~~~---~~~~~~il~g~~~~~l~~ 179 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----SRGGKE---LLALFAYAYDS---LPNLKIILTGSEVGLLHD 179 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----TTTTHH---HHHHHHHHHHH---CTTEEEEEEESSHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----ccchhh---HHHHHHHHHHh---cCCeEEEEECCcHHHHHH
Confidence 012233333332 2248899999999875410 000111 22222222232 1355566554332 1
Q ss_pred -----CCCccCCCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHH
Q 003000 543 -----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIV 606 (859)
Q Consensus 543 -----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t~G~sgadL~~Lv 606 (859)
.....+ .||+...+.+++.+.++..+++...+...... .+..+..+...+.|+.. -+..++
T Consensus 180 ~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~ 246 (350)
T 2qen_A 180 FLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG-WLVVFG 246 (350)
T ss_dssp HHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH-HHHHHH
T ss_pred HHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-HHHHHH
Confidence 112223 24666789999999999999998877544332 33456677788888654 344443
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.10 E-value=1.2e-05 Score=108.24 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=106.3
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcC
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK 505 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~ 505 (859)
..|+++.||+|||||++++.+|..+|.+++.++|++.+. ...+..+|..+... ++++++||++.+...
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~e----- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDEK----- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHH-----
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcChH-----
Confidence 356899999999999999999999999999999987543 23446677666554 468999999887543
Q ss_pred CCCchhHHHHHHHHHH----hhcc-----------ccCCCCeEEEeccCCC----CCCCccCCCCCcccccccCCCCCHH
Q 003000 506 GSGGQERDATLNQLLV----CLDG-----------FEGRGNVITIASTNRP----DILDPALVRPGRFDRKIFIPKPGLI 566 (859)
Q Consensus 506 ~sgge~~r~~l~~LL~----~ld~-----------~~~~~~vlVIatTN~~----~~LdpaLlrpgRfd~~I~~~~Pd~~ 566 (859)
.-.+++..+. .+.. +.-..++.|++|.|+. ..|+++|.+ || +.|.+..||.+
T Consensus 713 ------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 713 ------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 1112222222 2211 1123457788888853 358888887 77 57999999999
Q ss_pred HHHHHHHHHHccCCCCCc-----ccHH-HHHhhCC-----CCCHHHHHHHHHHHHHH
Q 003000 567 GRMEILKVHARKKPMADD-----VDYL-AVASMTD-----GMVGAELANIVEVAAIN 612 (859)
Q Consensus 567 eR~~Il~~~l~~~~~~~d-----~dl~-~lA~~t~-----G~sgadL~~Lv~~A~~~ 612 (859)
...+|+-.... ...... +.+- .+..... .|.-+.+..++..|...
T Consensus 784 ~i~ei~l~s~G-f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 784 TIAEMILQIMG-FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp HHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 88887643321 111100 0111 1112222 26788888888877543
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.09 E-value=1.9e-06 Score=87.82 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=76.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhc--------cc-ccEEEeeccccchhhh----------cccch--hhhhHHHHH--Hh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGE--------AG-VNFFSISASQFVEIYV----------GVGAS--RVRSLYQEA--KD 483 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~e--------l~-~~~~~is~s~~~~~~~----------g~~~~--~l~~lfe~a--~~ 483 (859)
.-.+++|+||+|||+++..++.. .| .+++..++.++...+. ..... ....+++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 34799999999999998875332 23 4454555554432211 00101 112333332 23
Q ss_pred cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCCC
Q 003000 484 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 563 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~P 563 (859)
..+++|+|||++.+.+.+.. +.+.. .++..+.. ....++-||.+|+.++.|+.+++. |++..+++++|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~----~~e~~-----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSA----GSKIP-----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCT----TCCCC-----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccc----cchhH-----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 44779999999998654321 11111 24444442 233456677788889999999877 99999998876
Q ss_pred CHH
Q 003000 564 GLI 566 (859)
Q Consensus 564 d~~ 566 (859)
...
T Consensus 154 ~~~ 156 (199)
T 2r2a_A 154 KMG 156 (199)
T ss_dssp SSC
T ss_pred ccC
Confidence 544
No 103
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.09 E-value=6.4e-06 Score=91.78 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=95.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcccc--cEEEeeccccchh-----hhcccchh-------hhhHHHHHHhcCCcEEEhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEI-----YVGVGASR-------VRSLYQEAKDNAPSVVFIDE 493 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~--~~~~is~s~~~~~-----~~g~~~~~-------l~~lfe~a~~~~p~Il~iDE 493 (859)
.++++|++||||++++++|....+. .|+.++|+.+... .+|...+. -...|+.+ ..+.+||||
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a---~~gtlflde 230 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELA---DQGTLFLDE 230 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT---TTSEEEEET
T ss_pred hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhc---CCCeEEecC
Confidence 3899999999999999999875532 3999999875432 22322111 12355554 345899999
Q ss_pred hHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc-----C----CCCeEEEeccCCCC-------CCCccCCCCCcccc-
Q 003000 494 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNRPD-------ILDPALVRPGRFDR- 556 (859)
Q Consensus 494 Id~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~-----~----~~~vlVIatTN~~~-------~LdpaLlrpgRfd~- 556 (859)
|+.+... ....|+..++... . ..++-+|++||..- .+.+.|.. |+..
T Consensus 231 i~~l~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~ 294 (368)
T 3dzd_A 231 VGELDQR--------------VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVF 294 (368)
T ss_dssp GGGSCHH--------------HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSE
T ss_pred hhhCCHH--------------HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCe
Confidence 9998654 6777777776411 1 12577898888531 22333333 3322
Q ss_pred cccCCCCCH--HHHHHHHHHHHccC----CCC-Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHH
Q 003000 557 KIFIPKPGL--IGRMEILKVHARKK----PMA-DDVD---YLAVASMTDGMVGAELANIVEVAAIN 612 (859)
Q Consensus 557 ~I~~~~Pd~--~eR~~Il~~~l~~~----~~~-~d~d---l~~lA~~t~G~sgadL~~Lv~~A~~~ 612 (859)
.|.+|+... ++...++..++... ... ..++ +..|..+.=.-..++|.++++.|...
T Consensus 295 ~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 295 QIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp EEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred EEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 355555543 44555555555321 111 1222 33344433122347777888777644
No 104
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.07 E-value=1.1e-06 Score=97.52 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=40.9
Q ss_pred hcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 411 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 411 ~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.|.+...+.++++.++.| +.|+||||||||||+++|+|...+..+.|...
T Consensus 13 ~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~ 64 (359)
T 3fvq_A 13 SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64 (359)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEEC
Confidence 344445677888888877 89999999999999999999998887777543
No 105
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.03 E-value=1.1e-06 Score=98.24 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=40.4
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.....+.++++.++.| +.|+||||||||||+|+|+|...+..+.|...
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEEC
Confidence 44445667888888877 89999999999999999999998887777543
No 106
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.97 E-value=1.9e-06 Score=92.30 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=37.8
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.|...
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~ 68 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFD 68 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEEC
Confidence 567788888877 89999999999999999999988877777543
No 107
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.97 E-value=1.1e-06 Score=95.72 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=45.7
Q ss_pred CceEEEECCCCCCchhHHHhhhhccc----ccEEEeeccccchhhhcc-cchhhhhHHHHHHhcCCcEEEhhhhHhh
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAG----VNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAV 497 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~----~~~~~is~s~~~~~~~g~-~~~~l~~lfe~a~~~~p~Il~iDEId~l 497 (859)
+.+++|+||||||||+|+.+|+..+. .++..+++.++...+... ....+..++.... .+++|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 46799999999999999999998664 667777777665543221 1111222333332 3469999999543
No 108
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.97 E-value=2.7e-06 Score=94.17 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=37.6
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| +.|+||||||||||+++|+|...+..+.|...
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 75 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIG 75 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Confidence 3566778888776 89999999999999999999988877776543
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.95 E-value=1.1e-05 Score=80.59 Aligned_cols=26 Identities=42% Similarity=0.708 Sum_probs=23.0
Q ss_pred EEEECCCCCCchhHHHhhhhcccccE
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNF 454 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~ 454 (859)
++|+||||+|||||++.|++.++..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 78999999999999999999876443
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.95 E-value=1.2e-05 Score=91.93 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=98.7
Q ss_pred CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEec---------cC---CCCCCCccCCCCCc
Q 003000 486 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS---------TN---RPDILDPALVRPGR 553 (859)
Q Consensus 486 p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIat---------TN---~~~~LdpaLlrpgR 553 (859)
|.|++|||++.+... .++.|+..|+.. ..+++|+++ |+ .++.++|.+++ |
T Consensus 296 ~~VliIDEa~~l~~~--------------a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIE--------------CFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCBHH--------------HHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcCHH--------------HHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCChhHHh--h
Confidence 469999999998644 788999998843 344555455 33 26778999999 8
Q ss_pred ccccccCCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003000 554 FDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMT-DGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 631 (859)
Q Consensus 554 fd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~lA~~t-~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~ 631 (859)
|.. +.|++|+.++...+++..+...... ++..+..++..+ .| +++...++++.|...|..+++..|+.+|+..|+.
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 876 6999999999999999887543332 233356677776 54 7787889999999999999999999999999987
Q ss_pred HH
Q 003000 632 IE 633 (859)
Q Consensus 632 ~~ 633 (859)
.+
T Consensus 436 ~~ 437 (456)
T 2c9o_A 436 LF 437 (456)
T ss_dssp HS
T ss_pred Hh
Confidence 54
No 111
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.93 E-value=1.2e-05 Score=88.12 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=113.4
Q ss_pred ccCceEEEECCCCCCchhHHHhhhhcccc----cEEEeeccccchhhhcccchhhhhHHHHHHh----cCCcEEEhhhhH
Q 003000 424 RIPGGILLCGPPGVGKTLLAKAVAGEAGV----NFFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELD 495 (859)
Q Consensus 424 ~~~~gvLL~GPpGtGKTtLakaLA~el~~----~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~----~~p~Il~iDEId 495 (859)
..++.++|+||+|.||++.++.|+..+.. +...+... + ...++.+++.+.. ....|++|||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 34566999999999999999999886521 11112111 1 1234555555542 335699999987
Q ss_pred h-hhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC------CCCCccCCCCCcccccccCCCCCHHHH
Q 003000 496 A-VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP------DILDPALVRPGRFDRKIFIPKPGLIGR 568 (859)
Q Consensus 496 ~-l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~------~~LdpaLlrpgRfd~~I~~~~Pd~~eR 568 (859)
. +... ..+.|+..++. +..++++|.+++.+ ..+.+++.+ |. .++.|.+++..+.
T Consensus 87 ~kl~~~--------------~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l 147 (343)
T 1jr3_D 87 NGPNAA--------------INEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQL 147 (343)
T ss_dssp SCCCTT--------------HHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHH
T ss_pred CCCChH--------------HHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHH
Confidence 7 5322 56778887874 33455555444332 245567776 43 4788999999999
Q ss_pred HHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003000 569 MEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 633 (859)
Q Consensus 569 ~~Il~~~l~~~~~~~d-~dl~~lA~~t~G~sgadL~~Lv~~A~~~A~~~~~~~It~edl~~Al~~~ 633 (859)
...++..+...++.-+ ..+..++..+.| +.+++.+.++.....+ +...||.+++...+...
T Consensus 148 ~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 148 PRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 9999988877665422 234556666654 5555656666554432 34479999999887643
No 112
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.93 E-value=3.5e-06 Score=93.93 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=39.6
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.+...+.++++.++.| +.|+||||||||||+++|||...+..+.|...
T Consensus 21 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 71 (372)
T 1v43_A 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71 (372)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEEC
Confidence 33334567788888877 89999999999999999999988877777543
No 113
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.92 E-value=2.8e-06 Score=94.21 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=39.4
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.+...+.++++.++.| +.|+||||||||||+++|+|...+..+.|...
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (359)
T 2yyz_A 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred ECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEEC
Confidence 33334567788888877 89999999999999999999988877777543
No 114
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.91 E-value=2.9e-06 Score=94.23 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=39.2
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.+...+.++++.++.| +.|+||||||||||+++|+|...+..+.|...
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (362)
T 2it1_A 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63 (362)
T ss_dssp SSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence 33333567788888877 89999999999999999999988877777543
No 115
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.89 E-value=1.3e-05 Score=104.84 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=74.8
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh----hhc------------ccchhhhhHHHHHHh
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVG------------VGASRVRSLYQEAKD 483 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~----~~g------------~~~~~l~~lfe~a~~ 483 (859)
+..+.+++|+||||||||+||.+++.++ +.....++..+.... ..| .....+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 5556679999999999999999998765 445556665543211 111 112334556667778
Q ss_pred cCCcEEEhhhhHhhhhcc---CCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEecc
Q 003000 484 NAPSVVFIDELDAVGRER---GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 538 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~~r---~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT 538 (859)
..|++|+||+++.+.+.. +...++........++++|..|.++....+++||.+-
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 899999999999876532 2111222111234677888888877777777776553
No 116
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.85 E-value=2.9e-06 Score=88.04 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=37.8
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 34567788888777 8999999999999999999998887777654
No 117
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.83 E-value=7.4e-06 Score=85.54 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=38.2
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| +.|+||||+|||||+++|+|...+..+.|...
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEEC
Confidence 567788888877 99999999999999999999998888877653
No 118
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.82 E-value=3.4e-06 Score=93.42 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=36.7
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.++.| +.|+||||+|||||+++|+|...+..+.|..
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 567788888877 8999999999999999999998877777654
No 119
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.81 E-value=4e-06 Score=93.48 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=38.4
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.+...+.++++.++.| +.|+||||||||||+++|+|...+..+.|..
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 33334567778888776 8999999999999999999998877776654
No 120
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.77 E-value=4.9e-06 Score=91.95 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=37.6
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| +.|+||||||||||+++|+|...+..+.|...
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~ 60 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Confidence 567788888877 89999999999999999999988887777554
No 121
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.76 E-value=7.5e-06 Score=87.18 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=37.9
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
|.....+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.|.
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~ 69 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH 69 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE
T ss_pred eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 34445677888888877 899999999999999999998876655554
No 122
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.73 E-value=3.1e-05 Score=80.94 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=38.0
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.|...
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK 65 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEEC
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 3567788888877 99999999999999999999988777777654
No 123
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.69 E-value=2.2e-05 Score=82.88 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=36.9
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
..+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.|.
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3567778888777 899999999999999999999888777775
No 124
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.69 E-value=4.5e-05 Score=81.06 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=36.7
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++ | ++|+||||+|||||+++|+|.+ +..+.+...
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~ 63 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFIN 63 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEET
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEEC
Confidence 35677788888 7 8999999999999999999999 888877654
No 125
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.69 E-value=3.9e-05 Score=80.68 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=37.8
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.|...
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~ 69 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 69 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3567788888877 89999999999999999999988877776543
No 126
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.67 E-value=2.5e-05 Score=82.35 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=36.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| ++|+||||+|||||+++|+|.+.+. +.+...
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~ 59 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFA 59 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEET
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEEC
Confidence 456677777776 8999999999999999999999887 887654
No 127
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.67 E-value=9.4e-06 Score=90.06 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=38.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| +.|+||||+|||||+++|++...+..+.|...
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~ 88 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVD 88 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence 567888888887 99999999999999999999988887777543
No 128
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.65 E-value=1.9e-05 Score=107.00 Aligned_cols=137 Identities=20% Similarity=0.299 Sum_probs=86.4
Q ss_pred CceEEEECCCCCCchhHHHh-hhhcccccEEEeeccccchhhhcccchhhhhHHHHH----H------------hcCCcE
Q 003000 426 PGGILLCGPPGVGKTLLAKA-VAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA----K------------DNAPSV 488 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLaka-LA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a----~------------~~~p~I 488 (859)
...+||+||+|||||.+++. ++...+.+++.++++..... ..+...++.. + .....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 34589999999999987755 54444666778887764432 1111222210 0 011248
Q ss_pred EEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhcccc--------CCCCeEEEeccCCCC-----CCCccCCCCCccc
Q 003000 489 VFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------GRGNVITIASTNRPD-----ILDPALVRPGRFD 555 (859)
Q Consensus 489 l~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~--------~~~~vlVIatTN~~~-----~LdpaLlrpgRfd 555 (859)
+|+||++.-..+. -|.+..-..+.+++..- ++. .-.++.+|+|+|+|. .+++.|+| ||.
T Consensus 1378 lFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDK-----YGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEETTTTCCCCCT-----TSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEecccCCCCccc-----cccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 9999997533221 22334444555555321 111 124688999999884 58999998 886
Q ss_pred ccccCCCCCHHHHHHHHHHHHc
Q 003000 556 RKIFIPKPGLIGRMEILKVHAR 577 (859)
Q Consensus 556 ~~I~~~~Pd~~eR~~Il~~~l~ 577 (859)
+++++.|+.++...|+..++.
T Consensus 1450 -vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 -ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -EEECCCCCHHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHH
Confidence 589999999999999876654
No 129
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.64 E-value=3.8e-05 Score=79.82 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=38.1
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.|...
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 68 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 68 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEEC
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEEC
Confidence 3567778888777 99999999999999999999998887777654
No 130
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.63 E-value=5.4e-05 Score=81.56 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=39.5
Q ss_pred HHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 403 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 403 ~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+.++++... ....+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.|...
T Consensus 41 l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 98 (290)
T 2bbs_A 41 LSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECC
T ss_pred EEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 444454432 234678888888887 89999999999999999999988777777654
No 131
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.60 E-value=0.00016 Score=74.76 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.4
Q ss_pred ceEEEECCCCCCchhHHHhhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVA 447 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA 447 (859)
.-++|+||||+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 349999999999999999999
No 132
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.56 E-value=5.2e-05 Score=82.31 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=38.6
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| +.|+||||+|||||+++|++.+.+..+.|...
T Consensus 68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 114 (306)
T 3nh6_A 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114 (306)
T ss_dssp EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEET
T ss_pred ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEEC
Confidence 4577888888877 99999999999999999999998887777543
No 133
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.54 E-value=2.3e-05 Score=82.08 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=33.2
Q ss_pred hhccCCccC-ceEEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 418 YRRRGVRIP-GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 418 ~~~~gl~~~-~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+.++++.++ .-+.|+||||+|||||+++|+|...+..+.+...
T Consensus 15 l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 58 (240)
T 2onk_A 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLN 58 (240)
T ss_dssp EEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 444444433 4589999999999999999999988877777543
No 134
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.52 E-value=2e-05 Score=80.35 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=23.4
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~ 452 (859)
++++|+||||||||+++.+||+.+.-
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56999999999999999999998743
No 135
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.51 E-value=0.00011 Score=74.82 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.1
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el 450 (859)
..++|+||||+|||||++.+++.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999754
No 136
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.48 E-value=7.1e-05 Score=76.33 Aligned_cols=23 Identities=35% Similarity=0.267 Sum_probs=20.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
-++|+||||+|||||++.|++.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999844
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.47 E-value=1.6e-05 Score=78.52 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred CCccCce--EEEECCCCCCchhHHHhhh
Q 003000 422 GVRIPGG--ILLCGPPGVGKTLLAKAVA 447 (859)
Q Consensus 422 gl~~~~g--vLL~GPpGtGKTtLakaLA 447 (859)
++.++.| ++|+||||+|||||++++.
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 4455555 8999999999999999543
No 138
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.46 E-value=0.00017 Score=98.15 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=87.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCC
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 506 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~ 506 (859)
.|..+.||+|||||.+++.||..+|.+++.++|++.... ..+..+|..+... .+..++|||+.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~------ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEER------ 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHH------
Confidence 457899999999999999999999999999999875432 3345667666554 457899999887433
Q ss_pred CCchhHHHHHHHHHHhh-------------c-c--ccCCCCeEEEeccCCC----CCCCccCCCCCcccccccCCCCCHH
Q 003000 507 SGGQERDATLNQLLVCL-------------D-G--FEGRGNVITIASTNRP----DILDPALVRPGRFDRKIFIPKPGLI 566 (859)
Q Consensus 507 sgge~~r~~l~~LL~~l-------------d-~--~~~~~~vlVIatTN~~----~~LdpaLlrpgRfd~~I~~~~Pd~~ 566 (859)
.-.++...+..+ + + +.-+.++.|+.|.|+. ..|+.+|.. || +.|.++.||.+
T Consensus 672 -----vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 672 -----ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 111222222211 1 1 1223467788888853 468888887 77 46999999998
Q ss_pred HHHHHHH
Q 003000 567 GRMEILK 573 (859)
Q Consensus 567 eR~~Il~ 573 (859)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887753
No 139
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.45 E-value=5.9e-05 Score=79.97 Aligned_cols=67 Identities=22% Similarity=0.374 Sum_probs=42.6
Q ss_pred EEEECCCCCCchhHHHhhhhccccc-EEEeecccc-chh-------hhcc-----cchhhhhHHHHHHhcCCcEEEhhhh
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVN-FFSISASQF-VEI-------YVGV-----GASRVRSLYQEAKDNAPSVVFIDEL 494 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~-~~~is~s~~-~~~-------~~g~-----~~~~l~~lfe~a~~~~p~Il~iDEI 494 (859)
++|+||||+|||||+++|++.+.+. .+.+...+. ... ++.+ ....++..+..+....|.++++||.
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCC
T ss_pred EEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCC
Confidence 8999999999999999999987554 343322110 000 1111 1122344555555668999999998
Q ss_pred H
Q 003000 495 D 495 (859)
Q Consensus 495 d 495 (859)
.
T Consensus 108 ~ 108 (261)
T 2eyu_A 108 R 108 (261)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.43 E-value=3.9e-05 Score=75.20 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=32.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
....+++.++.| ++|+||||+|||||+++|++.+ +..+.+..
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~ 65 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKS 65 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCC
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEE
Confidence 344556666666 8999999999999999999988 55555543
No 141
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.37 E-value=6.3e-05 Score=79.51 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=40.3
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.|...
T Consensus 17 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 67 (257)
T 1g6h_A 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67 (257)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 33334677888888877 89999999999999999999998887877653
No 142
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.35 E-value=6.4e-05 Score=79.73 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=40.0
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.|...
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 66 (262)
T 1b0u_A 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66 (262)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 33334567788888877 89999999999999999999988887777653
No 143
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.33 E-value=6.5e-05 Score=78.61 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=39.0
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
....+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.|...
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 66 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 334567788888877 89999999999999999999988888877653
No 144
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.31 E-value=0.00012 Score=85.46 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=60.6
Q ss_pred CCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccchh--hhhHHHHHHhcCC-----cEEEhh
Q 003000 422 GVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASR--VRSLYQEAKDNAP-----SVVFID 492 (859)
Q Consensus 422 gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~--l~~lfe~a~~~~p-----~Il~iD 492 (859)
++.++.| +.|+||||+|||||+++|+|.+.+..+.+......-.|+.+.... ...+.+....... .-..++
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 3344555 999999999999999999998877766664332111122111100 0112222211110 000011
Q ss_pred hh-Hhhh----hccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCC
Q 003000 493 EL-DAVG----RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNR 540 (859)
Q Consensus 493 EI-d~l~----~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~ 540 (859)
++ +.+. ..+....-|||++.+..+...| .....++++ .+|+.
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL------~~~p~lLlLDEPT~g 415 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATL------AKEADLYVLDQPSSY 415 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHH------HSCCSEEEEESTTTT
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH------HcCCCEEEEeCCccC
Confidence 11 1110 0111222399999999998888 456777877 67664
No 145
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.31 E-value=7.7e-05 Score=79.23 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=40.1
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.|...
T Consensus 34 y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 84 (263)
T 2olj_A 34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 84 (263)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Confidence 33334577788888877 89999999999999999999998887777653
No 146
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.31 E-value=5.9e-05 Score=82.73 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=46.2
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccccchh----------hhcccchhhhhHHHHHHhcCCcEEEhhhhHh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI----------YVGVGASRVRSLYQEAKDNAPSVVFIDELDA 496 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~----------~~g~~~~~l~~lfe~a~~~~p~Il~iDEId~ 496 (859)
.++|+||||+|||||+++|++...+..+.+...+.... ++.++....+..+..+....|.++++||...
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 39999999999999999999988665544443321110 1100122334566667778899999999753
No 147
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.30 E-value=7.3e-05 Score=76.94 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=37.8
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.|...
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 69 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 69 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 4567778888777 99999999999999999999988877777543
No 148
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.29 E-value=0.00034 Score=82.84 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=38.6
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| +.|+||||+|||||+++|+|...+..|.+...
T Consensus 369 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 415 (598)
T 3qf4_B 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415 (598)
T ss_dssp CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEET
T ss_pred ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEEC
Confidence 3567788888877 99999999999999999999998888777544
No 149
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.28 E-value=8.6e-05 Score=78.54 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=39.0
Q ss_pred cchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 414 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 414 ~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
....+.++++.++.| +.|+||||+|||||+++|+|...+..+.|...
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 75 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 334567788888877 89999999999999999999988887777653
No 150
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.28 E-value=0.00022 Score=72.11 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=27.5
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
.-++|+||||+|||||++.+++..+...+.++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34899999999999999999984455666666543
No 151
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.27 E-value=8e-05 Score=79.79 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=40.3
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
|.+...+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.|...
T Consensus 31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 81 (279)
T 2ihy_A 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81 (279)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEEC
Confidence 43344677788888877 89999999999999999999998888877654
No 152
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.26 E-value=0.00029 Score=77.95 Aligned_cols=109 Identities=19% Similarity=0.236 Sum_probs=60.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh----hhccc--------chhhhhHHHH----HHhcCCcE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGVG--------ASRVRSLYQE----AKDNAPSV 488 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~----~~g~~--------~~~l~~lfe~----a~~~~p~I 488 (859)
-++|+||||+|||||+..++..+ +...++++....... .+|.. ...+..++.. ++...+++
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 38999999999999999999865 345566665542211 01111 0111222222 23467899
Q ss_pred EEhhhhHhhhhccCCcCCCCchh----HHHHHHHHHHhhccccCCCCeEEEec
Q 003000 489 VFIDELDAVGRERGLIKGSGGQE----RDATLNQLLVCLDGFEGRGNVITIAS 537 (859)
Q Consensus 489 l~iDEId~l~~~r~~~~~sgge~----~r~~l~~LL~~ld~~~~~~~vlVIat 537 (859)
++||.+..+.+..... +..++. ....+..++..|..+....++.||.+
T Consensus 143 vVIDSi~~l~~~~el~-g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 143 IVVDSVAALVPRAEIE-GAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp EEEECTTTCCCHHHHT-TCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred EEehHhhhhcChhhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9999988776411111 111221 12345566665555555556666654
No 153
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.25 E-value=0.00013 Score=80.82 Aligned_cols=70 Identities=20% Similarity=0.394 Sum_probs=43.9
Q ss_pred Cce-EEEECCCCCCchhHHHhhhhccccc-EE-Eeeccccchh-------hh-----cccchhhhhHHHHHHhcCCcEEE
Q 003000 426 PGG-ILLCGPPGVGKTLLAKAVAGEAGVN-FF-SISASQFVEI-------YV-----GVGASRVRSLYQEAKDNAPSVVF 490 (859)
Q Consensus 426 ~~g-vLL~GPpGtGKTtLakaLA~el~~~-~~-~is~s~~~~~-------~~-----g~~~~~l~~lfe~a~~~~p~Il~ 490 (859)
++| ++|+||||+|||||+++|++.+... -+ .++..+-.+. ++ +.....+...+..+....|.+++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 444 8999999999999999999987543 11 1121111111 11 11112234456667778899999
Q ss_pred hhhhH
Q 003000 491 IDELD 495 (859)
Q Consensus 491 iDEId 495 (859)
+||+.
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99984
No 154
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.22 E-value=0.00024 Score=73.07 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=26.6
Q ss_pred ceEEEECCCCCCchhHHHhhhhc--c-------cccEEEeeccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGE--A-------GVNFFSISASQ 461 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~e--l-------~~~~~~is~s~ 461 (859)
.-++|+||||+|||||++.|++. + +...++++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 34899999999999999999984 3 23455665544
No 155
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.21 E-value=0.00028 Score=83.42 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=38.2
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| +.|+||||+|||||+++|+|...+..|.+...
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 404 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLD 404 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEET
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEEC
Confidence 577888888887 99999999999999999999998887776543
No 156
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.19 E-value=0.00032 Score=82.64 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=38.9
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..++++++.++.| +.|+||||+|||||+++|+|...+..|.+...
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 401 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 401 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEET
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEEC
Confidence 4577888888877 99999999999999999999998888877554
No 157
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.19 E-value=0.00041 Score=81.77 Aligned_cols=44 Identities=27% Similarity=0.331 Sum_probs=37.2
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.++.| +.|+||||+|||||+++|+|...+..|.+..
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 4677888888887 9999999999999999999988777666543
No 158
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.19 E-value=0.00012 Score=85.58 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=61.4
Q ss_pred hccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhhcccc-----hhhhhHHHHH-HhcCCcEEE
Q 003000 419 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGA-----SRVRSLYQEA-KDNAPSVVF 490 (859)
Q Consensus 419 ~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~-----~~l~~lfe~a-~~~~p~Il~ 490 (859)
...++.++.| +.|+||||+|||||+++|+|...+..+.|..... -.|+.+.. ..+...+... ......
T Consensus 303 ~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~-i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~--- 378 (538)
T 1yqt_A 303 EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLT-VAYKPQYIKADYEGTVYELLSKIDASKLNS--- 378 (538)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCC-EEEECSSCCCCCSSBHHHHHHHHHHHHHTC---
T ss_pred EeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECce-EEEEecCCcCCCCCcHHHHHHhhhccCCCH---
Confidence 3334444555 9999999999999999999988766555543110 01222211 1111111111 000000
Q ss_pred hhhhHhhhhc--------cCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEE-eccCCC
Q 003000 491 IDELDAVGRE--------RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRP 541 (859)
Q Consensus 491 iDEId~l~~~--------r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVI-atTN~~ 541 (859)
-+.++.++.. +....-|||++.+..+...| ....+++++ .+||..
T Consensus 379 ~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL------~~~p~lLlLDEPt~~L 432 (538)
T 1yqt_A 379 NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATL------LRDADIYLLDEPSAYL 432 (538)
T ss_dssp HHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHH------TSCCSEEEEECTTTTC
T ss_pred HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH------HhCCCEEEEeCCcccC
Confidence 0112222211 11122399999999999888 456778887 777753
No 159
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.18 E-value=0.00013 Score=77.67 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=38.3
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.|...
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~ 79 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 3567788888877 89999999999999999999988877777653
No 160
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.17 E-value=0.00027 Score=78.09 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=45.9
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh----hhcccch--------hhhhHHH----HHHh
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGVGAS--------RVRSLYQ----EAKD 483 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~----~~g~~~~--------~l~~lfe----~a~~ 483 (859)
+....-++|+||||+|||||+..++..+ +....+++....... .+|.... .+..+++ .++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 3333349999999999999999998654 345555655432211 1111111 1122222 2234
Q ss_pred cCCcEEEhhhhHhhhh
Q 003000 484 NAPSVVFIDELDAVGR 499 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~ 499 (859)
..|++|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 5699999999988763
No 161
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.15 E-value=0.0004 Score=81.88 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=38.6
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.++.| +.|+||||+|||||+++|+|...+..|.+...
T Consensus 357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 403 (582)
T 3b60_A 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 403 (582)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEET
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEEC
Confidence 4677888888887 99999999999999999999998887776543
No 162
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.15 E-value=0.00011 Score=77.07 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=36.3
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.|..
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3567778888877 9999999999999999999988766665543
No 163
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.12 E-value=0.00022 Score=79.51 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=46.9
Q ss_pred hhhccCCccCceEEEECCCCCCchhHHHhhhhccccc-EEEee-ccccch-------hhhcc-----cchhhhhHHHHHH
Q 003000 417 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-FFSIS-ASQFVE-------IYVGV-----GASRVRSLYQEAK 482 (859)
Q Consensus 417 ~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el~~~-~~~is-~s~~~~-------~~~g~-----~~~~l~~lfe~a~ 482 (859)
.+.++.+.....++|+||||+|||||+++|++.+.+. .+.+- ...-.+ .++.+ ....+...+..+.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 3444443322339999999999999999999977543 23331 111011 01222 2223344455555
Q ss_pred hcCCcEEEhhhhH
Q 003000 483 DNAPSVVFIDELD 495 (859)
Q Consensus 483 ~~~p~Il~iDEId 495 (859)
...|+++++||+.
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 6789999999984
No 164
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.00016 Score=72.91 Aligned_cols=39 Identities=33% Similarity=0.403 Sum_probs=27.0
Q ss_pred hccCCccCc--eEEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 419 RRRGVRIPG--GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 419 ~~~gl~~~~--gvLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
.++++.++. .++|+|||||||||+++.|++.++.+++..
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 344555544 499999999999999999999998877543
No 165
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.11 E-value=0.00016 Score=76.72 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=37.7
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.|...
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~ 67 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYD 67 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 567778888877 88999999999999999999988877777653
No 166
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.10 E-value=0.00014 Score=76.52 Aligned_cols=45 Identities=31% Similarity=0.455 Sum_probs=36.2
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhc--ccccEEEeec
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGE--AGVNFFSISA 459 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~e--l~~~~~~is~ 459 (859)
...+.++++.++.| +.|+||||+|||||+++|+|. ..+..+.|..
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~ 64 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 34567778888777 899999999999999999997 5556666654
No 167
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.08 E-value=0.0003 Score=77.68 Aligned_cols=29 Identities=34% Similarity=0.306 Sum_probs=24.1
Q ss_pred CCccCce--EEEECCCCCCchhHHHhhhhcc
Q 003000 422 GVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 422 gl~~~~g--vLL~GPpGtGKTtLakaLA~el 450 (859)
+..++.| +.|+||||+|||||++.+++..
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444 9999999999999999999876
No 168
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.07 E-value=0.00017 Score=85.31 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=29.8
Q ss_pred cCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 421 RGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 421 ~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.++.+..| +.|+||||+|||||+++|+|.+.+..+.+.
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~ 414 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 414 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 33444555 899999999999999999998876655554
No 169
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.06 E-value=0.00061 Score=80.42 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=38.7
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..++++++.++.| +.|+||||+|||||+++|++...+..+.+...
T Consensus 357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 403 (587)
T 3qf4_A 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD 403 (587)
T ss_dssp CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEES
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEC
Confidence 4677888888877 99999999999999999999998887777543
No 170
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.04 E-value=0.00019 Score=76.28 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=37.2
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcc--cccEEEeec
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSISA 459 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el--~~~~~~is~ 459 (859)
|.+...+.++++.++.| ++|+||||+|||||+++|+|.. .+..+.|..
T Consensus 30 y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~ 81 (267)
T 2zu0_C 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81 (267)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 33334677788888877 8999999999999999999974 445566654
No 171
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.01 E-value=0.00034 Score=69.38 Aligned_cols=34 Identities=35% Similarity=0.540 Sum_probs=27.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
-++|+||||+|||||++.|++..+...+.++..+
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 4899999999999999999998665656666544
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.95 E-value=0.00016 Score=76.14 Aligned_cols=43 Identities=28% Similarity=0.534 Sum_probs=33.0
Q ss_pred chhhhccCCccCc---e--EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 415 GEMYRRRGVRIPG---G--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 415 ~~~~~~~gl~~~~---g--vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
...+.++++.+.. | ++|+|++|+||||+++.||+.++.+++..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 3345555555444 3 99999999999999999999998876653
No 173
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00039 Score=68.10 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=30.5
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeecccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 462 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~ 462 (859)
.-|+|+|+||+||||+++.|+..++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 348999999999999999999999888877665543
No 174
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.93 E-value=0.00059 Score=87.78 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=40.3
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
..++++++.+++| +.|+||+|+|||||+++|.+...+..|.|..+.
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 4578889999988 999999999999999999999999888876543
No 175
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.91 E-value=0.00033 Score=74.10 Aligned_cols=42 Identities=26% Similarity=0.263 Sum_probs=35.2
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+.++++.++.| ++|+||||+|||||+++|+|.+.+ .+.|..
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i 78 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKI 78 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEE
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEE
Confidence 567778888877 999999999999999999998764 676654
No 176
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.91 E-value=0.0013 Score=73.00 Aligned_cols=115 Identities=23% Similarity=0.258 Sum_probs=61.3
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh----hhcccc--------hhhhhHHHHH----H
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGVGA--------SRVRSLYQEA----K 482 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~----~~g~~~--------~~l~~lfe~a----~ 482 (859)
|+....-++|+||||+|||+|+..++..+ +.+..+++....... .+|... ..+..+++.+ +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34333448999999999999999887654 445666665432211 111110 1112222222 2
Q ss_pred hcCCcEEEhhhhHhhhhccCCcCCCCch----hHHHHHHHHHHhhccccCCCCeEEEec
Q 003000 483 DNAPSVVFIDELDAVGRERGLIKGSGGQ----ERDATLNQLLVCLDGFEGRGNVITIAS 537 (859)
Q Consensus 483 ~~~p~Il~iDEId~l~~~r~~~~~sgge----~~r~~l~~LL~~ld~~~~~~~vlVIat 537 (859)
...+++|+||.+..+...... .+..++ .....+..++..|..+....++.||++
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~-~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~ 207 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEI-EGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFI 207 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC---------CCHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCCCCEEEEeChHHhcccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 456899999999887632111 111111 111234555555554445566666665
No 177
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.87 E-value=0.001 Score=77.64 Aligned_cols=40 Identities=35% Similarity=0.470 Sum_probs=31.6
Q ss_pred hhccCCccC-ce--EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 418 YRRRGVRIP-GG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 418 ~~~~gl~~~-~g--vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
|+-.++..| .| +.|+||||+|||||+|+|+|.+.+..+.+
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 445566666 34 89999999999999999999887766554
No 178
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.83 E-value=0.00051 Score=66.91 Aligned_cols=28 Identities=32% Similarity=0.755 Sum_probs=25.0
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
.++|+||||+||||+++.|++.++.+++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999999999999887554
No 179
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.79 E-value=0.0028 Score=72.02 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=88.5
Q ss_pred cEEEhhhhHhhhhccCCcCCCCchhH-HHHHHHHHHhhccc--------cCCCCeEEEecc-----CCCCCCCccCCCCC
Q 003000 487 SVVFIDELDAVGRERGLIKGSGGQER-DATLNQLLVCLDGF--------EGRGNVITIAST-----NRPDILDPALVRPG 552 (859)
Q Consensus 487 ~Il~iDEId~l~~~r~~~~~sgge~~-r~~l~~LL~~ld~~--------~~~~~vlVIatT-----N~~~~LdpaLlrpg 552 (859)
+++++||||+++.... ++++... ..+...||..|++. .+.+++++|+|. |..+ +.|+|+.
T Consensus 252 ~il~~DEidki~~~~~---~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~~-- 325 (444)
T 1g41_A 252 GIVFIDEIDKICKKGE---YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-LIPELQG-- 325 (444)
T ss_dssp CEEEEETGGGGSCCSS---CSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-SCHHHHT--
T ss_pred CeeeHHHHHHHhhccC---CCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-cchHHhc--
Confidence 4899999999975422 1233333 23677889888873 246789999887 5444 5588877
Q ss_pred cccccccCCCCCHHHHHHHHH---H-----H---HccCCCC---CcccHHHHHh-------hCCCCCHHHHHHHHHHHHH
Q 003000 553 RFDRKIFIPKPGLIGRMEILK---V-----H---ARKKPMA---DDVDYLAVAS-------MTDGMVGAELANIVEVAAI 611 (859)
Q Consensus 553 Rfd~~I~~~~Pd~~eR~~Il~---~-----~---l~~~~~~---~d~dl~~lA~-------~t~G~sgadL~~Lv~~A~~ 611 (859)
||+.+|.|+.++.++...|+. . + +...+.. .+.-+..++. .|...-.+.|..++..+..
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 999999999999999999994 1 1 1111111 1222344444 3455556777666666555
Q ss_pred HHHHh------CCCccCHHHHHHHHH
Q 003000 612 NMMRD------GRTEITTDDLLQAAQ 631 (859)
Q Consensus 612 ~A~~~------~~~~It~edl~~Al~ 631 (859)
.+... ....||.+++...+.
T Consensus 406 ~~~~~~~~~~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 406 KISFSASDMNGQTVNIDAAYVADALG 431 (444)
T ss_dssp HHHHHGGGCTTCEEEECHHHHHHHHT
T ss_pred HHHhhccccCCCeEEEeHHHHHHhcC
Confidence 44333 123488888876653
No 180
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.78 E-value=0.00044 Score=70.93 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=22.6
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el 450 (859)
-+.++++.++.| ++|+||||+|||||++.|++..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456677777777 9999999999999999999976
No 181
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.78 E-value=0.00062 Score=84.11 Aligned_cols=37 Identities=27% Similarity=0.591 Sum_probs=30.7
Q ss_pred cccchhhhccCCccCce--EEEECCCCCCchhHHHhhhh
Q 003000 412 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 412 ~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~ 448 (859)
|++...+.++++.+..| +.|+||||+|||||+++|++
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44445677788888777 99999999999999999994
No 182
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.75 E-value=0.0012 Score=74.08 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=56.4
Q ss_pred ceEEEECCCCCCchhHHHhhh--hcc-------cccEEEeeccccchh--------hhcccc------------------
Q 003000 427 GGILLCGPPGVGKTLLAKAVA--GEA-------GVNFFSISASQFVEI--------YVGVGA------------------ 471 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA--~el-------~~~~~~is~s~~~~~--------~~g~~~------------------ 471 (859)
.-++|+||||+|||||++.++ ... +...++++....... .+|...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~ 258 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQ 258 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHHH
Confidence 339999999999999999665 222 223556655432110 011100
Q ss_pred -hhhhhHHHHHHhcCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccC
Q 003000 472 -SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 539 (859)
Q Consensus 472 -~~l~~lfe~a~~~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN 539 (859)
..+..+...+....|.+++||++-.+........++.+ .....+..++..|..+....++.||.++.
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~-~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELS-ARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHH-HHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchH-HHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 01112223334467899999999877543211011111 22223455555555444444556665554
No 183
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.74 E-value=0.0006 Score=67.29 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=27.7
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
+..|+|+||+||||||+++.||..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34589999999999999999999998877644
No 184
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.74 E-value=0.0013 Score=72.69 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=47.0
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh----hhccc-----------chhhhhHHHH-HHh
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGVG-----------ASRVRSLYQE-AKD 483 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~----~~g~~-----------~~~l~~lfe~-a~~ 483 (859)
+....-++|+||||+|||+|+..++..+ +....+++....... .+|.. ...+..++.. ++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4434449999999999999999988754 445666666432211 11111 1111222222 234
Q ss_pred cCCcEEEhhhhHhhhh
Q 003000 484 NAPSVVFIDELDAVGR 499 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~ 499 (859)
..+++|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999988753
No 185
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.74 E-value=0.00028 Score=76.52 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=35.7
Q ss_pred HHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcc
Q 003000 403 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 403 ~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el 450 (859)
+.++++...|. ...+.++++.++.| ++|+||||+|||||+++|++.+
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34444444443 34567777888877 9999999999999999999987
No 186
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0014 Score=77.60 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=26.1
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
+.|+||||+|||||+++|+|.+.+..+.+
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 99999999999999999999887766655
No 187
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.72 E-value=0.0015 Score=76.38 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=29.5
Q ss_pred hhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 418 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 418 ~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
+.+++ .+..| +.|+||||+|||||+++|+|.+.+..+.
T Consensus 38 l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 38 LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 34455 55555 9999999999999999999987655444
No 188
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0009 Score=79.17 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=31.0
Q ss_pred hhccCCccCce-------EEEECCCCCCchhHHHhhhhcccccEE
Q 003000 418 YRRRGVRIPGG-------ILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 418 ~~~~gl~~~~g-------vLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
+.++.+.+..| +.|+||||+|||||+++|+|.+.+..+
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 45566777766 899999999999999999998765544
No 189
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.70 E-value=0.00051 Score=76.94 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=37.0
Q ss_pred chhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 415 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 415 ~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
...+.++++.++.| +.|+||||||||||+++|+|... ..+.|...
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~ 80 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQID 80 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEES
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEEC
Confidence 34567888888877 99999999999999999999876 66666543
No 190
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.69 E-value=0.00056 Score=71.29 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=24.7
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhccccc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
.+.++++.++.| +.|.||||+|||||++.|++.++..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 456667777766 8999999999999999999987643
No 191
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.69 E-value=0.00072 Score=65.48 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=26.7
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
-|+|.||+|+||||+++.|+..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3789999999999999999999887775443
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.68 E-value=0.0018 Score=70.52 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=61.7
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcc---------cccEEEeeccccc--h----h--hhcccc--------------
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFV--E----I--YVGVGA-------------- 471 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el---------~~~~~~is~s~~~--~----~--~~g~~~-------------- 471 (859)
+....-++|+||||+|||+|+..++..+ +...++++..... . . .+|...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3333349999999999999999998754 3456666655421 1 0 011100
Q ss_pred -h----hhhhHHHHHHh-cCCcEEEhhhhHhhhhccCCcCCCCch-hHHHHHHHHHHhhccccCCCCeEEEec
Q 003000 472 -S----RVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQ-ERDATLNQLLVCLDGFEGRGNVITIAS 537 (859)
Q Consensus 472 -~----~l~~lfe~a~~-~~p~Il~iDEId~l~~~r~~~~~sgge-~~r~~l~~LL~~ld~~~~~~~vlVIat 537 (859)
. .+..+...+.. ..+.+|+||.+..+..... .+.+.. .....+..++..|..+....++.||.+
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~--~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~ 254 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEY--PGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIIT 254 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHS--CTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhh--cCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 0 11223333444 6788999999988864311 111111 112245555555555444445566654
No 193
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.68 E-value=0.001 Score=85.34 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=39.2
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..++++++.++.| +.|+||+|+|||||+++|++...+..|.|...
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~ 450 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEET
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 3678888888887 99999999999999999999998888777554
No 194
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.67 E-value=0.00096 Score=82.25 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=26.1
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhh
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~ 448 (859)
...++.+.++.| ++|+||||+|||||+|.++.
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 445666766655 99999999999999999975
No 195
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.66 E-value=0.00058 Score=75.74 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=46.2
Q ss_pred hccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeeccccchh----------hhc-cc-------chhhhhHH
Q 003000 419 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI----------YVG-VG-------ASRVRSLY 478 (859)
Q Consensus 419 ~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~----------~~g-~~-------~~~l~~lf 478 (859)
..+++.++.| ++|+||||+|||||+++|++...+..+.+...+..+. ++. +. ...++..+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i 245 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLL 245 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHH
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHH
Confidence 3444444444 9999999999999999999988665444433221110 111 11 11223444
Q ss_pred HHHHhcCCcEEEhhhhH
Q 003000 479 QEAKDNAPSVVFIDELD 495 (859)
Q Consensus 479 e~a~~~~p~Il~iDEId 495 (859)
..+....|++++++|+.
T Consensus 246 ~~~l~~~pd~~l~~e~r 262 (361)
T 2gza_A 246 RSCLRMKPTRILLAELR 262 (361)
T ss_dssp HHHTTSCCSEEEESCCC
T ss_pred HHHHhcCCCEEEEcCch
Confidence 55556678888888764
No 196
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.66 E-value=0.00048 Score=79.93 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=43.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeeccccchhhh--------------cccchhhhhHHHHHHhcCCcEEEhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV--------------GVGASRVRSLYQEAKDNAPSVVFID 492 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~--------------g~~~~~l~~lfe~a~~~~p~Il~iD 492 (859)
.+++|+||||+|||||+++|++.+.+..+.+...+..+... +.....+..+...+.+..|+++++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 34999999999999999999998866544443322111100 0111122344455556789999999
Q ss_pred hhH
Q 003000 493 ELD 495 (859)
Q Consensus 493 EId 495 (859)
|+.
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 873
No 197
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.65 E-value=0.00073 Score=66.86 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=26.5
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
+.-|+|+|+||+||||+++.|+..++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4458999999999999999999988776554
No 198
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.65 E-value=0.0017 Score=71.47 Aligned_cols=108 Identities=22% Similarity=0.225 Sum_probs=58.4
Q ss_pred EEEECCCCCCchhHHHhhhhcc---------cccEEEeeccccch------h--hhccc---------------chhh--
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVE------I--YVGVG---------------ASRV-- 474 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---------~~~~~~is~s~~~~------~--~~g~~---------------~~~l-- 474 (859)
++|+||||+|||+|+..+|... +...++++...... . .+|.. ...+
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ 204 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQME 204 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHH
Confidence 8999999999999999998752 34556666544211 0 01110 0111
Q ss_pred --hhHHHHHHh--cCCcEEEhhhhHhhhhccCCcCCCCc-hhHHHHHHHHHHhhccccCCCCeEEEecc
Q 003000 475 --RSLYQEAKD--NAPSVVFIDELDAVGRERGLIKGSGG-QERDATLNQLLVCLDGFEGRGNVITIAST 538 (859)
Q Consensus 475 --~~lfe~a~~--~~p~Il~iDEId~l~~~r~~~~~sgg-e~~r~~l~~LL~~ld~~~~~~~vlVIatT 538 (859)
..+...+.. ..+.+|+||.+..+...... +.+. ......+..++..|..+....++.||.++
T Consensus 205 ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~--~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~n 271 (343)
T 1v5w_A 205 LLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS--GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTN 271 (343)
T ss_dssp HHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC--GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCccEEEEechHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 112233444 67889999999887643111 0011 11112345555555544444555666543
No 199
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.65 E-value=0.0012 Score=69.20 Aligned_cols=38 Identities=34% Similarity=0.439 Sum_probs=30.1
Q ss_pred cCceEEEECCCCCCchhHHHhhhhcccccEEEeecccc
Q 003000 425 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 462 (859)
Q Consensus 425 ~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~ 462 (859)
.|..++|+||||+||||+++.|+..++...+.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34459999999999999999999988765555665543
No 200
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.62 E-value=0.0058 Score=63.14 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=41.1
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEeeccc---c---chhhhccc-----chhhhhHHHHHHh----cCCcEEE
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQ---F---VEIYVGVG-----ASRVRSLYQEAKD----NAPSVVF 490 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~---~---~~~~~g~~-----~~~l~~lfe~a~~----~~p~Il~ 490 (859)
++++||+|+||||++-.++..+ +.....++... . +....|.. ......+++.+.. ..+++|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 7889999999999988777655 34444443221 0 00011111 0112356666654 3488999
Q ss_pred hhhhHhh
Q 003000 491 IDELDAV 497 (859)
Q Consensus 491 iDEId~l 497 (859)
|||+..+
T Consensus 95 IDEaQ~l 101 (223)
T 2b8t_A 95 IDEVQFF 101 (223)
T ss_dssp ECSGGGS
T ss_pred EecCccC
Confidence 9999765
No 201
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.58 E-value=0.00085 Score=66.64 Aligned_cols=30 Identities=40% Similarity=0.771 Sum_probs=25.6
Q ss_pred eEEEECCCCCCchhHHHhhhhc-ccccEEEe
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE-AGVNFFSI 457 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e-l~~~~~~i 457 (859)
.++|+|++||||||+++.|+.. ++.+++.+
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 4999999999999999999998 67666543
No 202
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.56 E-value=0.0008 Score=65.96 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=25.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.++|+||||+||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 38999999999999999999999877654
No 203
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.55 E-value=0.0014 Score=84.08 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=38.6
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.++++++.++.| +.|+||+|+|||||+++|++...+..|.|...
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~ 1093 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESS
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 577888888888 99999999999999999999998888777554
No 204
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.54 E-value=0.0023 Score=67.81 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.6
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
-++|+||||+|||||++.+++.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 39999999999999999998744
No 205
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.54 E-value=0.001 Score=66.92 Aligned_cols=27 Identities=41% Similarity=0.727 Sum_probs=23.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNF 454 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~ 454 (859)
-++|+||||+||||+++.|++.+|..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g~~~ 57 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETGLEF 57 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeE
Confidence 489999999999999999999886543
No 206
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.51 E-value=0.00078 Score=67.40 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.4
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
++++||+|+||||++-.++..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998655543
No 207
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.51 E-value=0.0025 Score=75.43 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=30.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.+.+++ .+..| +.|+||||+|||||+++|+|.+.+..+.
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 344555 55555 9999999999999999999988665444
No 208
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.49 E-value=0.0029 Score=83.11 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=72.8
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchhh----hcc--------cchhhhhHHHHHHh----
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY----VGV--------GASRVRSLYQEAKD---- 483 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~----~g~--------~~~~l~~lfe~a~~---- 483 (859)
+.....++|.|+||+|||+|+..+|..+ +.++++++..+..... +|. ....+..++..++.
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 4444559999999999999999999866 3457777776543332 121 11223445555544
Q ss_pred cCCcEEEhhhhHhhhh-ccCCc-CCCCch-hHHHHHHHHHHhhccccCCCCeEEEeccC
Q 003000 484 NAPSVVFIDELDAVGR-ERGLI-KGSGGQ-ERDATLNQLLVCLDGFEGRGNVITIASTN 539 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~-~r~~~-~~sgge-~~r~~l~~LL~~ld~~~~~~~vlVIatTN 539 (859)
..|++++||.+..+.. ..... .++..+ -....++.++..|..+....++.||+++.
T Consensus 809 ~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6799999999998864 21100 011111 11224677777777776777777776653
No 209
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.49 E-value=0.0027 Score=68.94 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=57.2
Q ss_pred eEEEECCCCCCchhHHHhhhhcc-----cccEEEeeccccchh----hhcccch--------hhhhH-HH---H---HHh
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----YVGVGAS--------RVRSL-YQ---E---AKD 483 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~----~~g~~~~--------~l~~l-fe---~---a~~ 483 (859)
-++|+||||+|||||+-.++..+ +....+++..+-... -+|.... ....+ ++ . ++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 38999999999999977665433 445667776543221 1111111 11222 22 2 245
Q ss_pred cCCcEEEhhhhHhhhhccCCcCCCC----c-hhHHHHHHHHHHhhccccCCCCeEEEec
Q 003000 484 NAPSVVFIDELDAVGRERGLIKGSG----G-QERDATLNQLLVCLDGFEGRGNVITIAS 537 (859)
Q Consensus 484 ~~p~Il~iDEId~l~~~r~~~~~sg----g-e~~r~~l~~LL~~ld~~~~~~~vlVIat 537 (859)
..|+++++|-|..+.+.....+.-+ + ......+++.|..|..+....++.||.+
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 6799999999988864221111111 1 1122344555555444444566666654
No 210
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.46 E-value=0.0012 Score=69.40 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=27.1
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
++|+||||||||||++.||+.++..++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 7899999999999999999999887765543
No 211
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.45 E-value=0.002 Score=69.11 Aligned_cols=36 Identities=39% Similarity=0.540 Sum_probs=28.4
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
|.-++|.||||+||||+++.|+..++..+..++...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 345999999999999999999988754556666533
No 212
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.45 E-value=0.0012 Score=64.57 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=24.2
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
.++|+||||+||||+++.|++.++..++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 3899999999999999999998765543
No 213
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.44 E-value=0.007 Score=62.01 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=23.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc---cccEEEeec
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 459 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 459 (859)
.-++|+||||+|||||+..++... +...++++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 348999999999999988776543 334444443
No 214
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.44 E-value=0.0011 Score=66.40 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=21.3
Q ss_pred EEEECCCCCCchhHHHhhhhccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~ 451 (859)
+.|+||||+|||||++.|++...
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 89999999999999999999763
No 215
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.42 E-value=0.00067 Score=76.72 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=24.6
Q ss_pred cCce-EEEECCCCCCchhHHHhhhhccccc
Q 003000 425 IPGG-ILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 425 ~~~g-vLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
.+++ ++|+||||+|||||+++|++.+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3455 8999999999999999999987654
No 216
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.42 E-value=0.0012 Score=66.16 Aligned_cols=30 Identities=33% Similarity=0.640 Sum_probs=25.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.-|+|+|+||+||||+++.|++.++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 358999999999999999999998766543
No 217
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.41 E-value=0.0012 Score=63.61 Aligned_cols=28 Identities=39% Similarity=0.603 Sum_probs=24.0
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
-|+|+||||+||||+++.| ..++.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 3789999999999999999 777777654
No 218
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.40 E-value=0.0026 Score=74.87 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el 450 (859)
+.++|+|||||||||++++|+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348999999999999999998754
No 219
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.40 E-value=0.0073 Score=70.73 Aligned_cols=144 Identities=14% Similarity=0.074 Sum_probs=74.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcc-------cccEEEeeccccc-----hh------hhcc-------cchh---hhh-HH
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQFV-----EI------YVGV-------GASR---VRS-LY 478 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el-------~~~~~~is~s~~~-----~~------~~g~-------~~~~---l~~-lf 478 (859)
-++|+||+|+||||||..++... ....+.++.+... .. .++. .... +.. +.
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 228 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLR 228 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHH
Confidence 48999999999999999997642 1123333333211 00 0110 0011 111 11
Q ss_pred HHHHh-cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCccccc
Q 003000 479 QEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRK 557 (859)
Q Consensus 479 e~a~~-~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~ 557 (859)
..... ..|.+|+||+++... . +..+ ..+..||.||........ . .+..-.+
T Consensus 229 ~~l~~~~~~~LLVLDdv~~~~----------------~----l~~l-----~~~~~ilvTsR~~~~~~~-~--~~~~~~v 280 (591)
T 1z6t_A 229 ILMLRKHPRSLLILDDVWDSW----------------V----LKAF-----DSQCQILLTTRDKSVTDS-V--MGPKYVV 280 (591)
T ss_dssp HHHHHTCTTCEEEEEEECCHH----------------H----HHTT-----CSSCEEEEEESCGGGGTT-C--CSCEEEE
T ss_pred HHHccCCCCeEEEEeCCCCHH----------------H----HHHh-----cCCCeEEEECCCcHHHHh-c--CCCceEe
Confidence 22222 257899999985421 1 1111 235567777765432211 1 1111111
Q ss_pred ccCCCCCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCH
Q 003000 558 IFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 599 (859)
Q Consensus 558 I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sg 599 (859)
....+.+.++-.++|..++.............++..+.|+.-
T Consensus 281 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 281 PVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPL 322 (591)
T ss_dssp ECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHH
T ss_pred ecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcH
Confidence 122467888999999888754221123346788899988653
No 220
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.40 E-value=0.0011 Score=66.99 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=22.6
Q ss_pred ccCce--EEEECCCCCCchhHHHhhhhccc
Q 003000 424 RIPGG--ILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 424 ~~~~g--vLL~GPpGtGKTtLakaLA~el~ 451 (859)
.++.| +.|+||||+|||||+++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44444 89999999999999999999874
No 221
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.39 E-value=0.0029 Score=78.18 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=24.0
Q ss_pred hhccCCccCce--EEEECCCCCCchhHHHhhh
Q 003000 418 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVA 447 (859)
Q Consensus 418 ~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA 447 (859)
..++.+..+.| ++|+||||+||||++|.++
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34555666554 9999999999999999994
No 222
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.39 E-value=0.0017 Score=65.83 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=27.0
Q ss_pred EEEECCCCCCchhHHHhhhhcccc---cEEEeeccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQ 461 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~---~~~~is~s~ 461 (859)
+.|.||||+|||||+++|++.+.+ ..+.+....
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 899999999999999999998863 456665543
No 223
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.38 E-value=0.0012 Score=65.01 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=26.0
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.|+|+|+||+||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 38999999999999999999999887654
No 224
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.38 E-value=0.0015 Score=64.17 Aligned_cols=30 Identities=47% Similarity=0.849 Sum_probs=26.1
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
..|+|+|+||+||||+++.|+..++..++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 459999999999999999999988776654
No 225
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.38 E-value=0.0011 Score=66.72 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=22.0
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-++|+||||+||||++++|++.++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999874
No 226
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.35 E-value=0.0018 Score=65.29 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=26.0
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
+.|+||||+|||||++.|++.+++.+..++..
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 89999999999999999999887444444433
No 227
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.34 E-value=0.0014 Score=84.30 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=36.5
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.++++++.++.| +.|+||+|+|||||+++|.+...+.-|.|..
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1138 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFI 1138 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEE
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEE
Confidence 567888888887 9999999999999999999988776665543
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.34 E-value=0.0015 Score=64.84 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=23.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNF 454 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~ 454 (859)
-+.|+||||+|||||++.|++.+...+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 378999999999999999999875433
No 229
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.34 E-value=0.0013 Score=66.01 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
-|+|+|+||+||||+++.|++ ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 378999999999999999999 77666543
No 230
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.31 E-value=0.0019 Score=68.43 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=26.5
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+++|+||||||||+|+++||..++. .+.++.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~ 136 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNW 136 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC-EEECCT
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc-cceeec
Confidence 46999999999999999999997655 455544
No 231
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.29 E-value=0.027 Score=71.26 Aligned_cols=167 Identities=13% Similarity=0.120 Sum_probs=90.3
Q ss_pred CccCchHHHHHHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc---c----ccEEEeeccccchh-
Q 003000 394 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---G----VNFFSISASQFVEI- 465 (859)
Q Consensus 394 ~~~gl~~~v~~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el---~----~~~~~is~s~~~~~- 465 (859)
...|-+..+..+.+....-. ..++-+.|+|+.|+||||||+.++... . ...+.++.+.....
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred eeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 35566666655555442111 112348999999999999999988763 1 12224443331110
Q ss_pred ----------hhcc-------cchhhhhHHHHHH---h--cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhh
Q 003000 466 ----------YVGV-------GASRVRSLYQEAK---D--NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 523 (859)
Q Consensus 466 ----------~~g~-------~~~~l~~lfe~a~---~--~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~l 523 (859)
.++. ....+..+.+..+ . ..+.+|+||+++... . +
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~----------------~-------~ 251 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW----------------V-------L 251 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------H-------H
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------H-------H
Confidence 0000 0011122222222 2 236789999986431 1 1
Q ss_pred ccccCCCCeEEEeccCCCCCCCccCCCCCcccccccCCC-CCHHHHHHHHHHHHccCCCCCcccHHHHHhhCCCCCH
Q 003000 524 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK-PGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 599 (859)
Q Consensus 524 d~~~~~~~vlVIatTN~~~~LdpaLlrpgRfd~~I~~~~-Pd~~eR~~Il~~~l~~~~~~~d~dl~~lA~~t~G~sg 599 (859)
+.+ ..+..||.||......... . .....+.+++ ++.++-.++|..+..............|++.+.|..-
T Consensus 252 ~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 252 KAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp TTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHH
T ss_pred Hhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHH
Confidence 112 2345677788655432211 1 2335677775 8888999999887754332223346788999988653
No 232
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.29 E-value=0.0015 Score=63.45 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=26.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
.++|+|++||||||+++.||..++.+++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999887653
No 233
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.27 E-value=0.002 Score=69.73 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=26.8
Q ss_pred ccCCccCce--EEEECCCCCCchhHHHhhhhccccc
Q 003000 420 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 420 ~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
.+++.+..| ++|+||||+||||+++.||+.+.+.
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 344544444 8999999999999999999987543
No 234
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.26 E-value=0.0013 Score=64.68 Aligned_cols=28 Identities=36% Similarity=0.654 Sum_probs=24.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
.++|+|+|||||||+++.|+..++.+++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3899999999999999999998876554
No 235
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.25 E-value=0.0013 Score=67.72 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=18.4
Q ss_pred hccCCccCce--EEEECCCCCCchhHHHhhh-hccc
Q 003000 419 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVA-GEAG 451 (859)
Q Consensus 419 ~~~gl~~~~g--vLL~GPpGtGKTtLakaLA-~el~ 451 (859)
...++.++.| +.|+||||+|||||++.|+ +.+.
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4455666665 8999999999999999999 8763
No 236
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.24 E-value=0.0017 Score=63.98 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=25.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
.-|+|+|+|||||||+++.|+..++.+++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 34899999999999999999998886653
No 237
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.23 E-value=0.0019 Score=65.72 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
-+.|+||+||||||+++.|++.++.+++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 4899999999999999999998886554
No 238
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.23 E-value=0.0017 Score=63.08 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=25.7
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.|+|+|++|+||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 38999999999999999999998877654
No 239
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.20 E-value=0.002 Score=64.60 Aligned_cols=30 Identities=40% Similarity=0.616 Sum_probs=26.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
-|+|+|+||+||||+++.|+..++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 489999999999999999999988776543
No 240
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.19 E-value=0.0022 Score=62.51 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=22.6
Q ss_pred ceEEEECCCCCCchhHHHhhhh-ccccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAG-EAGVN 453 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~-el~~~ 453 (859)
.-|+|.|+||+||||+++.|+. .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 3489999999999999999998 45543
No 241
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.19 E-value=0.0023 Score=64.03 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.2
Q ss_pred eEEEECCCCCCchhHHHhhhhcccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~ 452 (859)
-++|+||||+||||+++.|++.+.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3899999999999999999998733
No 242
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.19 E-value=0.0019 Score=64.90 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.6
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
-+.|+||||+||||+++.|++ +|.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 378999999999999999998 776654
No 243
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.17 E-value=0.0019 Score=65.42 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=25.2
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
|+|+||||+||||+++.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999887766543
No 244
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.17 E-value=0.0017 Score=64.01 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=22.2
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-|+|.|+||+||||+++.|+..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999876
No 245
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.15 E-value=0.002 Score=66.27 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=22.2
Q ss_pred EEEECCCCCCchhHHHhhhhcccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~ 452 (859)
++|+||||+|||||+++|++...+
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCT
T ss_pred EEEECCCCCCHHHHHHHHhccCCC
Confidence 899999999999999999998763
No 246
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.14 E-value=0.002 Score=65.28 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=25.2
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
|+|+||||+||||+++.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999888766543
No 247
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.12 E-value=0.0021 Score=63.60 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=26.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.-|+|+|+||+||||+++.|+..++.+++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 358999999999999999999988876544
No 248
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.09 E-value=0.0025 Score=62.75 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.1
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
+.-|+|+|++||||||+++.|+..++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 3458999999999999999999988865543
No 249
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.09 E-value=0.0053 Score=70.06 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.++|.|++|||||+++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998766
No 250
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.08 E-value=0.0026 Score=62.35 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=21.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
.-|+|+|+||+||||+++.|+..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34899999999999999999999888765
No 251
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.06 E-value=0.0024 Score=65.44 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=26.5
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
+.-|+|+|+||+||||+++.|+..++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 3458999999999999999999988876554
No 252
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.06 E-value=0.0024 Score=63.45 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=25.7
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.-|+|+|+||+||||+++.|+..++.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 458999999999999999999998865543
No 253
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.05 E-value=0.0041 Score=75.83 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=25.2
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~e 449 (859)
...++.+. +.| ++|+||||+|||||+|.|++.
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 44555555 333 999999999999999999974
No 254
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.05 E-value=0.0023 Score=61.85 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=25.3
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
|+|+|++|+||||+++.|+..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999998877654
No 255
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.01 E-value=0.0029 Score=65.72 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=23.7
Q ss_pred CceEEEECCCCCCchhHHHhhhhccccc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
|.-++|+||||+||||+++.|+..++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4459999999999999999999666543
No 256
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.01 E-value=0.0028 Score=64.51 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
..|+|+|+||+||||+++.|+..++.+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 348999999999999999999998876544
No 257
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.99 E-value=0.0014 Score=66.96 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=23.2
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
+.|+||||+|||||+++|++. .+..+.+
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 899999999999999999997 5443333
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.95 E-value=0.0093 Score=64.53 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=21.7
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el 450 (859)
.-++|+||||+||||++..||+.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Confidence 348999999999999999999876
No 259
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.95 E-value=0.0021 Score=69.54 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.8
Q ss_pred EEEECCCCCCchhHHHhhhhccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~ 451 (859)
+.|+||||+|||||++.|++.++
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999876
No 260
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.94 E-value=0.014 Score=59.06 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=55.5
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEeeccc---------cchhh-----------hccc------chhhhhHHH
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQ---------FVEIY-----------VGVG------ASRVRSLYQ 479 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~---------~~~~~-----------~g~~------~~~l~~lfe 479 (859)
+++++++|.||||+|-.+|-.+ |..+..+..-. +.... .-.. .......++
T Consensus 31 i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~ 110 (196)
T 1g5t_A 31 IIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQ 110 (196)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHH
Confidence 8999999999999998887644 45554442211 11111 0000 112233344
Q ss_pred HHHh----cCCcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCC
Q 003000 480 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 541 (859)
Q Consensus 480 ~a~~----~~p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~ 541 (859)
.++. ..+++|++||+-....-... -...++..+. ....+.-||.|+|.+
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l-----------~~~ev~~~l~--~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYL-----------PLEEVISALN--ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSS-----------CHHHHHHHHH--TSCTTCEEEEECSSC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCC-----------CHHHHHHHHH--hCcCCCEEEEECCCC
Confidence 4433 45899999999765432111 2234444454 334566677788764
No 261
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.013 Score=60.11 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=23.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhc----ccccEEEeec
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGE----AGVNFFSISA 459 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~e----l~~~~~~is~ 459 (859)
.-++|+|+||+|||+|+-.+|.. .+.+.++++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 33999999999999999876542 2445555554
No 262
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.93 E-value=0.0029 Score=63.31 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.7
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
-|+|+|++||||||+++.|+..++.+++..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 489999999999999999999888755443
No 263
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.93 E-value=0.0056 Score=66.29 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=59.3
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---------------c----ccEEEeecccc--chh------hhcccc---------
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---------------G----VNFFSISASQF--VEI------YVGVGA--------- 471 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---------------~----~~~~~is~s~~--~~~------~~g~~~--------- 471 (859)
-++|+||||+|||+|+..+|... + ...++++.... ... -+|...
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~ 179 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFV 179 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEE
Confidence 38999999999999999888642 2 45566665542 110 011100
Q ss_pred ------h----hhhhHHHHHHh-cCCcEEEhhhhHhhhhccCCcCCCCch-hHHHHHHHHHHhhccccCCCCeEEEec
Q 003000 472 ------S----RVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQ-ERDATLNQLLVCLDGFEGRGNVITIAS 537 (859)
Q Consensus 472 ------~----~l~~lfe~a~~-~~p~Il~iDEId~l~~~r~~~~~sgge-~~r~~l~~LL~~ld~~~~~~~vlVIat 537 (859)
. .+..+...+.. ..+.+|+||.+..+..... .+.+.. .....+..++..|..+....++.||.+
T Consensus 180 ~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~--~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~ 255 (322)
T 2i1q_A 180 ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEY--TGRGKLAERQQKLGRHMATLNKLADLFNCVVLVT 255 (322)
T ss_dssp EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHC--CCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 0 11223344444 5688999999988764311 111111 112245566666655544556666654
No 264
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.93 E-value=0.0031 Score=64.94 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=30.6
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
+..++-|+|.||||+||+|.++.|+..++.+. ++.+++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 34445588999999999999999999887654 55555543
No 265
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.92 E-value=0.0029 Score=62.21 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=25.7
Q ss_pred ccCCccCce-EEEECCCCCCchhHHHhhhhcccc
Q 003000 420 RRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 420 ~~gl~~~~g-vLL~GPpGtGKTtLakaLA~el~~ 452 (859)
.+.+.+..| .+|+||||+|||||+++|+..++.
T Consensus 19 ~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 19 KVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp CEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 334444444 789999999999999999987653
No 266
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.92 E-value=0.0042 Score=60.96 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=27.0
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEeec
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 459 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 459 (859)
++|+|++|+||||+++.|++.+ +.+++.++.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 8899999999999999999987 777776653
No 267
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.89 E-value=0.003 Score=69.89 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=26.2
Q ss_pred cCCccCce--EEEECCCCCCchhHHHhhhhccccc
Q 003000 421 RGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 421 ~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
+++.+..| ++|+||||+||||+++.||+.+.+.
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 44444444 9999999999999999999987543
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.88 E-value=0.0033 Score=64.14 Aligned_cols=34 Identities=38% Similarity=0.651 Sum_probs=27.7
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeeccccch
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 464 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 464 (859)
++|.||||+||+|.++.|+..++.+. ++.+++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 68999999999999999999987765 55555443
No 269
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.87 E-value=0.0036 Score=61.84 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.7
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-++|+||||+|||||++.|++...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 389999999999999999998764
No 270
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.85 E-value=0.0035 Score=62.35 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=24.5
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEE
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
|+|.|++|+||||+++.|+..++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 789999999999999999999887654
No 271
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0022 Score=73.40 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccc
Q 003000 402 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 402 v~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~ 452 (859)
.+.+.++...|. ++++.+..| ++|+||||+|||||+|+|+|.+.+
T Consensus 118 mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 118 MKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp HHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred hhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 467777777664 344555555 999999999999999999997743
No 272
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.84 E-value=0.0035 Score=63.90 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=26.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
.|+|.|+||+||||+++.|+..++.+++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 489999999999999999999988766543
No 273
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.82 E-value=0.0026 Score=64.85 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=25.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
..|+|.||||+||||+++.|+..++..++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 34899999999999999999999886543
No 274
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.80 E-value=0.0033 Score=62.21 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=20.2
Q ss_pred EEEECCCCCCchhHHHhhhhcc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el 450 (859)
++|+||||+||||+++.|++..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999999854
No 275
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.80 E-value=0.0046 Score=60.93 Aligned_cols=30 Identities=30% Similarity=0.190 Sum_probs=26.0
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEee
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSIS 458 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is 458 (859)
++|+|++||||||+++.|+..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 77776554
No 276
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.80 E-value=0.0038 Score=64.34 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=25.7
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.|+|.|+||+||||+++.|+..++.+++.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 48999999999999999999998876544
No 277
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.79 E-value=0.0038 Score=65.02 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=26.3
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
|..|+|+||||+||||+++.|+..++.+.+.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4458999999999999999999988766543
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.78 E-value=0.0096 Score=64.06 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=25.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhccc----ccEEEeecc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAG----VNFFSISAS 460 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~----~~~~~is~s 460 (859)
.-++|+||||+||||++..||+.+. ..+..++..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3499999999999999999998653 344445443
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.77 E-value=0.0041 Score=63.05 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=22.1
Q ss_pred EEEECCCCCCchhHHHhhhhcccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~ 452 (859)
++|+||||+|||||++.|++.+..
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 899999999999999999998754
No 280
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.77 E-value=0.026 Score=58.34 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=23.7
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEeec
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 459 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 459 (859)
+++.|++|+||||++-.+|..+ |..+..++.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 8999999999999998888765 444443333
No 281
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.76 E-value=0.012 Score=69.81 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=24.0
Q ss_pred CccCceEEEECCCCCCchhHHHhhhhcccc-cEEEe
Q 003000 423 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSI 457 (859)
Q Consensus 423 l~~~~gvLL~GPpGtGKTtLakaLA~el~~-~~~~i 457 (859)
+.+|. +.|+||+|+|||||+++|+|...+ ..|.+
T Consensus 43 l~lp~-iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~v 77 (608)
T 3szr_A 43 LALPA-IAVIGDQSSGKSSVLEALSGVALPRGSGIV 77 (608)
T ss_dssp CCCCC-EECCCCTTSCHHHHHHHHHSCC-------C
T ss_pred ccCCe-EEEECCCCChHHHHHHHHhCCCCCCCCCeE
Confidence 44454 999999999999999999998644 34444
No 282
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.76 E-value=0.013 Score=68.27 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=49.2
Q ss_pred cEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC--CCCccCCCCCcccccccCCCCC
Q 003000 487 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD--ILDPALVRPGRFDRKIFIPKPG 564 (859)
Q Consensus 487 ~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~--~LdpaLlrpgRfd~~I~~~~Pd 564 (859)
-+|+|||+..+.... +......+..+.. .-...++.+|.+|.+|. .++..++. -|...|.|...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar----~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQ----KARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHH----HCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHH----HHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 478999998876431 1122223333332 23456788888898887 67777765 677788888888
Q ss_pred HHHHHHHHH
Q 003000 565 LIGRMEILK 573 (859)
Q Consensus 565 ~~eR~~Il~ 573 (859)
..+-..|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 887777764
No 283
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.75 E-value=0.0016 Score=71.46 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=26.0
Q ss_pred hhccCCccCce--EEEECCCCCCchhHHHhhhhcc
Q 003000 418 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 418 ~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el 450 (859)
+.++.+....| +.|+||||+|||||+++|++.+
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34444555554 8999999999999999999865
No 284
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.75 E-value=0.0036 Score=63.01 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.7
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-++|+||||+|||||++.|++...
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 389999999999999999998764
No 285
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.74 E-value=0.0031 Score=67.04 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.++|+||||+|||||+++|+|...+..+.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~ 34 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSW 34 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 3789999999999999999998876666553
No 286
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.73 E-value=0.0035 Score=63.62 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.2
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
|+|.|+||+||||+++.|+..++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999887665443
No 287
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.73 E-value=0.0049 Score=61.98 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.2
Q ss_pred EEEECCCCCCchhHHHhhhhcc-cccEE
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA-GVNFF 455 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el-~~~~~ 455 (859)
++|+|++|+||||+++.|++.+ +..++
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 8899999999999999999987 44443
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.72 E-value=0.0033 Score=61.81 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.5
Q ss_pred EEEECCCCCCchhHHHhhhhccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~ 451 (859)
|+|.|+||+||||+++.|+..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999775
No 289
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.72 E-value=0.021 Score=66.36 Aligned_cols=27 Identities=37% Similarity=0.466 Sum_probs=22.8
Q ss_pred ccCce--EEEECCCCCCchhHHHhhhhcc
Q 003000 424 RIPGG--ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 424 ~~~~g--vLL~GPpGtGKTtLakaLA~el 450 (859)
.++.| ++|.||||+|||||++.+++..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444 8999999999999999999865
No 290
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.72 E-value=0.0046 Score=64.71 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=24.6
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
-+.|.||+|+||||+++.|+..++..+.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3899999999999999999988876554
No 291
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.69 E-value=0.0073 Score=60.17 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=26.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc-cccEEEee
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA-GVNFFSIS 458 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el-~~~~~~is 458 (859)
.-|+|.|++|+||||+++.|+..+ +.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 348999999999999999999988 56666554
No 292
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.69 E-value=0.0041 Score=68.53 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=31.1
Q ss_pred hhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 418 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 418 ~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
...+ +.+.+| +.|.||||+|||||++.|++...+..+.+.
T Consensus 62 ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~ 103 (347)
T 2obl_A 62 IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLA 103 (347)
T ss_dssp HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 3444 555555 899999999999999999999877655443
No 293
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.65 E-value=0.0098 Score=67.77 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=27.2
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcc----cccEEEeec
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISA 459 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el----~~~~~~is~ 459 (859)
|+....-++|.|+||+|||+|+..+|..+ +.++..++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 33333349999999999999999998754 335555553
No 294
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.63 E-value=0.0059 Score=60.43 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=24.8
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEe
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSI 457 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~i 457 (859)
|+|.|++||||||+++.|+..+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 7899999999999999999988 7777654
No 295
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.63 E-value=0.005 Score=70.00 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=33.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
.+..+ +.+++| ++|.||||+|||||++.|++...+..+.+..
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~ 190 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL 190 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 34455 666666 8999999999999999999998877666544
No 296
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.63 E-value=0.0052 Score=70.52 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=27.6
Q ss_pred hccCCccCce--EEEECCCCCCchhHHHhhhhccccc
Q 003000 419 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 419 ~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
..+++.+..| ++|+||||+|||||++.|++.+...
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 3455555554 9999999999999999999987543
No 297
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.62 E-value=0.0081 Score=75.08 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+||||+|||||+|.+ |.
T Consensus 791 i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHH-HH
T ss_pred EEEEECCCCCChHHHHHHH-HH
Confidence 3999999999999999999 53
No 298
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.60 E-value=0.02 Score=64.91 Aligned_cols=34 Identities=35% Similarity=0.289 Sum_probs=25.4
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeec
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 459 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 459 (859)
|.-++++||+|+||||++..||..+ +..+..+++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3348999999999999999999766 344444443
No 299
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.59 E-value=0.0057 Score=66.62 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=28.6
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
..++|+||+|||||||++.||..++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 358999999999999999999999877776654
No 300
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.59 E-value=0.0054 Score=64.44 Aligned_cols=32 Identities=31% Similarity=0.563 Sum_probs=26.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc---ccccEEEeec
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE---AGVNFFSISA 459 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e---l~~~~~~is~ 459 (859)
-|+|+|+||+||||+++.|+.. .+.+++.++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 4899999999999999999987 5666554444
No 301
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.52 E-value=0.0058 Score=62.56 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.9
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEE
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
|+|.|+||+||||+++.|+..++.+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 789999999999999999998876543
No 302
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.51 E-value=0.026 Score=63.98 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=43.0
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh----------------h---hcccc-hhhhhHHHHHH
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----------------Y---VGVGA-SRVRSLYQEAK 482 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~----------------~---~g~~~-~~l~~lfe~a~ 482 (859)
|.-++++|++|+||||++..||..+ +..+..+++..+... | .+... ..+...++.+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4459999999999999999998755 444544554332110 1 11111 11234556666
Q ss_pred hcCCcEEEhhhh
Q 003000 483 DNAPSVVFIDEL 494 (859)
Q Consensus 483 ~~~p~Il~iDEI 494 (859)
...++++++|..
T Consensus 180 ~~~~DvVIIDTa 191 (443)
T 3dm5_A 180 SKGVDIIIVDTA 191 (443)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEECC
Confidence 667889999976
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.49 E-value=0.0048 Score=62.02 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=20.8
Q ss_pred EEEECCCCCCchhHHHhhhhcc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el 450 (859)
++|+||||+|||||++.|++.+
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999976
No 304
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.48 E-value=0.0064 Score=60.72 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=26.2
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
-+.|.|++|+||||+++.|++.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 489999999999999999999998776543
No 305
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.44 E-value=0.0031 Score=78.00 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=38.4
Q ss_pred hhhhccCCccCce--EEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 416 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 416 ~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
..+.++++.+..| +.|+||||+|||||+++|+|.+.+..|.|...
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 3567778887776 99999999999999999999998888887654
No 306
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.41 E-value=0.019 Score=66.40 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=46.4
Q ss_pred EEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCC--CCCccCCCCCcccccccCCCCCH
Q 003000 488 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD--ILDPALVRPGRFDRKIFIPKPGL 565 (859)
Q Consensus 488 Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~--~LdpaLlrpgRfd~~I~~~~Pd~ 565 (859)
+++|||+..+.... +......+..|. ......++.+|.+|.+|. .++..++. -|...|.|...+.
T Consensus 300 vlvIDE~~~ll~~~-------~~~~~~~l~~La----r~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~ 366 (512)
T 2ius_A 300 VVLVDEFADLMMTV-------GKKVEELIARLA----QKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEETHHHHHHHH-------HHHHHHHHHHHH----HHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSH
T ss_pred EEEEeCHHHHHhhh-------hHHHHHHHHHHH----HHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCH
Confidence 78999998776421 111222233332 222334777888888876 57766655 6777888888888
Q ss_pred HHHHHHHH
Q 003000 566 IGRMEILK 573 (859)
Q Consensus 566 ~eR~~Il~ 573 (859)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88877774
No 307
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.41 E-value=0.0085 Score=71.75 Aligned_cols=27 Identities=41% Similarity=0.665 Sum_probs=23.7
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHH
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLA 443 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLa 443 (859)
.+.++++.++.| +.|+||||+|||||+
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 467788888877 999999999999997
No 308
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.37 E-value=0.0081 Score=62.46 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=25.3
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
.-++|.||+|+||||+++.|+..++.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 35899999999999999999999886653
No 309
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.34 E-value=0.025 Score=65.88 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=75.6
Q ss_pred ceEEEECCCCCCchhHHHhhhh----cccccE---EEeeccccc-----hh------hhccc---------c----hhhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAG----EAGVNF---FSISASQFV-----EI------YVGVG---------A----SRVR 475 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~----el~~~~---~~is~s~~~-----~~------~~g~~---------~----~~l~ 475 (859)
+.+.|+|+.|+||||||+.+++ .....| +.++.+... .. .++.. . ..+.
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~ 232 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLK 232 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHH
Confidence 4489999999999999999995 332222 223333311 00 11111 0 0011
Q ss_pred hHHHHHHhcC-CcEEEhhhhHhhhhccCCcCCCCchhHHHHHHHHHHhhccccCCCCeEEEeccCCCCCCCccCCCCCcc
Q 003000 476 SLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRF 554 (859)
Q Consensus 476 ~lfe~a~~~~-p~Il~iDEId~l~~~r~~~~~sgge~~r~~l~~LL~~ld~~~~~~~vlVIatTN~~~~LdpaLlrpgRf 554 (859)
..+....... ..+|+||+++... .+ .+. . ..+..||.||....... . . +..
T Consensus 233 ~~l~~~L~~~kr~LlVLDdv~~~~----------------~~-~~~-~------~~gs~ilvTTR~~~v~~-~-~--~~~ 284 (549)
T 2a5y_B 233 RMICNALIDRPNTLFVFDDVVQEE----------------TI-RWA-Q------ELRLRCLVTTRDVEISN-A-A--SQT 284 (549)
T ss_dssp HHHHHHHTTSTTEEEEEEEECCHH----------------HH-HHH-H------HTTCEEEEEESBGGGGG-G-C--CSC
T ss_pred HHHHHHHcCCCcEEEEEECCCCch----------------hh-ccc-c------cCCCEEEEEcCCHHHHH-H-c--CCC
Confidence 2222233343 6788999886531 11 111 1 14556777776533211 1 1 113
Q ss_pred cccccCCCCCHHHHHHHHHHHHccCCCCCcc--cHHHHHhhCCCCC
Q 003000 555 DRKIFIPKPGLIGRMEILKVHARKKPMADDV--DYLAVASMTDGMV 598 (859)
Q Consensus 555 d~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~--dl~~lA~~t~G~s 598 (859)
+..+.+++.+.++-.++|..+.......... ....++..+.|..
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 3568899999999999998875433211111 1345666666654
No 310
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.30 E-value=0.035 Score=59.56 Aligned_cols=45 Identities=22% Similarity=0.110 Sum_probs=30.4
Q ss_pred HHHHHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc
Q 003000 404 ELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 404 ~l~~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el 450 (859)
..+++...+.... ..+.+..+..++++|++|+||||++..||+.+
T Consensus 78 ~~~~l~~~~~~~~--~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 78 VYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp HHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC--ceeecCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555554321 33444422348889999999999999999866
No 311
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.29 E-value=0.0055 Score=61.22 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHHhcccchhhhccCCccCce--EEEECCCCCCchhHHHhhhhcc
Q 003000 403 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 403 ~~l~~~v~~~~~~~~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA~el 450 (859)
+.++++...|.. ..+.+ +.+..| ++|+|+||+|||||+++|++..
T Consensus 4 l~~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 4 LNYQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp -------CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555555543 23333 444444 9999999999999999999864
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.29 E-value=0.0062 Score=66.08 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=22.1
Q ss_pred EEEECCCCCCchhHHHhhhhcccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~ 452 (859)
+.|.||||+|||||++.|++.+.+
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHhhccc
Confidence 899999999999999999997754
No 313
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.26 E-value=0.007 Score=60.97 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=25.0
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
+.|+|++||||||+++.|+..+|.+++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 8999999999999999999987876654
No 314
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.20 E-value=0.0077 Score=61.07 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=24.2
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
-|+|+|++|+||||+++.|+. ++.+++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 489999999999999999998 7766544
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.20 E-value=0.0069 Score=60.54 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=22.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~ 452 (859)
-|+|.|+||+||||+++.|+..++.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3899999999999999999998765
No 316
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.20 E-value=0.0072 Score=60.08 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
-|.|+|++||||||+++.|+.. +.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 4899999999999999999998 665543
No 317
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.20 E-value=0.012 Score=61.38 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=28.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccE--------EEeeccccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNF--------FSISASQFV 463 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~--------~~is~s~~~ 463 (859)
-|+|.|++||||||+++.|+..++.++ ..++..++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 489999999999999999999888663 346665543
No 318
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.16 E-value=0.0057 Score=65.25 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.7
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-++|+||||+|||||++.|++.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998763
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.15 E-value=0.0054 Score=61.56 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=23.4
Q ss_pred ceEEEECCCCCCchhHHHhhhhccccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
.-|+|+|++||||||+++.|+..++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 348999999999999999999877544
No 320
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.15 E-value=0.0074 Score=60.70 Aligned_cols=25 Identities=44% Similarity=0.733 Sum_probs=22.3
Q ss_pred ceEEEECCCCCCchhHHHhhhhccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
.-++|+||||+||||+++.|+..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3489999999999999999998774
No 321
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.13 E-value=0.012 Score=63.69 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=28.2
Q ss_pred CceEEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
|.-++|+||+|+|||+|+..||..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3448899999999999999999998876665543
No 322
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.06 E-value=0.01 Score=65.03 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
-|+|+||+|+|||+|+..||..++..++..+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 48999999999999999999999877766554
No 323
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.02 E-value=0.0075 Score=65.21 Aligned_cols=28 Identities=25% Similarity=0.113 Sum_probs=23.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
-++|+||||+||||+++.||+.+.+.-+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~~g 131 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGK 131 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999998755433
No 324
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.01 E-value=0.012 Score=59.05 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.3
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
-+.|+||+|+||||+++.|++.+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999876
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.01 E-value=0.0058 Score=67.55 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNF 454 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~ 454 (859)
.++|+||||+|||||++.|++.+.+..
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 389999999999999999999887765
No 326
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.99 E-value=0.0074 Score=68.19 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.4
Q ss_pred EEEECCCCCCchhHHHhhhhcc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el 450 (859)
++|+||||+|||||+++|+|..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 6899999999999999999863
No 327
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.97 E-value=0.016 Score=75.35 Aligned_cols=114 Identities=22% Similarity=0.258 Sum_probs=68.7
Q ss_pred ccCce--EEEECCCCCCchhHHHhhhhcc---cccEEEeeccccchh----------------hhcccchhhhhHHHHHH
Q 003000 424 RIPGG--ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----------------YVGVGASRVRSLYQEAK 482 (859)
Q Consensus 424 ~~~~g--vLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~----------------~~g~~~~~l~~lfe~a~ 482 (859)
-.|+| +.++||+|+|||||+-.++.+. +-....++..+-... +...++..+..+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 34555 9999999999999997665433 445555555432211 22333445555667778
Q ss_pred hcCCcEEEhhhhHhhhhccCCcCC----CCchhHHHHHHHHHHhhccccCCCCeEEEecc
Q 003000 483 DNAPSVVFIDELDAVGRERGLIKG----SGGQERDATLNQLLVCLDGFEGRGNVITIAST 538 (859)
Q Consensus 483 ~~~p~Il~iDEId~l~~~r~~~~~----sgge~~r~~l~~LL~~ld~~~~~~~vlVIatT 538 (859)
..++++|++|-+..+.+.....+. .-|-..+. +.+.|..|.+.....++++|.+.
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~-m~~~lr~l~~~~~~~~~~~i~~~ 1565 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARM-MSQAMRKLAGNLKQSNTLLIFIN 1565 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHH-HHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHH-HHHHHHHHHHHHHhCCcEEEEee
Confidence 899999999999998765432211 22223333 33444455555555677777653
No 328
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.97 E-value=0.011 Score=60.90 Aligned_cols=29 Identities=31% Similarity=0.592 Sum_probs=25.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.+.|+|++|+||||+++.|++.++.+++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 48999999999999999999988876543
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.96 E-value=0.0068 Score=60.84 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=23.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhccccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
.-|+|+|++||||||+++.|+..++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 348999999999999999999876543
No 330
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.91 E-value=0.032 Score=57.68 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=26.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeecc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 460 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s 460 (859)
.++++||+|+|||.++-+++..++...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 379999999999999998887776665555443
No 331
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.88 E-value=0.015 Score=58.81 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.7
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-++|+||+|+|||||++.|++...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 389999999999999999998764
No 332
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.81 E-value=0.041 Score=59.53 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=26.9
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeec
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 459 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 459 (859)
|+....-++|.|+||+|||+|+..+|... +.+.+.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 34443449999999999999999888643 345555543
No 333
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.81 E-value=0.064 Score=57.65 Aligned_cols=53 Identities=26% Similarity=0.245 Sum_probs=32.9
Q ss_pred HHHHHHhcccchhhhc-cCCcc-CceEEEECCCCCCchhHHHhhhhcc---cccEEEeec
Q 003000 405 LEEIVKFFTHGEMYRR-RGVRI-PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 459 (859)
Q Consensus 405 l~~~v~~~~~~~~~~~-~gl~~-~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 459 (859)
.+++...+.... .. +.+.. +.-++++|++|+||||++..||+.+ +.....+++
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHhcccc--ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 344555554322 22 33333 3348899999999999999999866 334444443
No 334
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.78 E-value=0.028 Score=63.82 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=27.3
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcc----cccEEEeec
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISA 459 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el----~~~~~~is~ 459 (859)
|+....-++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 44443448999999999999999888643 345555554
No 335
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.76 E-value=0.012 Score=56.51 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=21.3
Q ss_pred cCce-EEEECCCCCCchhHHHhhhhcc
Q 003000 425 IPGG-ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 425 ~~~g-vLL~GPpGtGKTtLakaLA~el 450 (859)
.+.| .+|+||||+|||+++.+|.-.+
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3344 7899999999999999997543
No 336
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.71 E-value=0.013 Score=64.14 Aligned_cols=31 Identities=32% Similarity=0.349 Sum_probs=26.0
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
-|+|.||+|+|||||++.||..++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 4899999999999999999999886554443
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.66 E-value=0.0071 Score=59.77 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=27.0
Q ss_pred eEEEECCCCCCchhHHHhhhhccccc---EEEeecc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVN---FFSISAS 460 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~---~~~is~s 460 (859)
.+.|+|++|+|||||++.|++.+.+. .+.+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 47899999999999999999988655 6666544
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.65 E-value=0.012 Score=58.10 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.9
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-++|+|+||+||||+++.|+..++
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998874
No 339
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.59 E-value=0.015 Score=58.76 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=25.8
Q ss_pred eEEEECCCCCCchhHHHhhhhccc----ccEEEeec
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG----VNFFSISA 459 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~----~~~~~is~ 459 (859)
-++|+|++|+||||+++.|++.++ .+++.++.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 489999999999999999999775 33555553
No 340
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.57 E-value=0.0097 Score=68.28 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.2
Q ss_pred hhccCCccCc-eEEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 418 YRRRGVRIPG-GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 418 ~~~~gl~~~~-gvLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
+.++++.++. -+.|+||||+|||||+++|++.+.+..+.+..
T Consensus 20 l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 20 FFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp EEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred ccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 3444555444 58999999999999999999987665554443
No 341
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.55 E-value=0.015 Score=58.78 Aligned_cols=29 Identities=38% Similarity=0.580 Sum_probs=25.7
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.+.|+|++|+||||+++.|+..++.+++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 48999999999999999999998876654
No 342
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.53 E-value=0.018 Score=57.75 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEECCCCCCchhHHHhhhhcccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~ 452 (859)
|+|+||+|+|||||++.|......
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 899999999999999999877543
No 343
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.53 E-value=0.01 Score=64.84 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.9
Q ss_pred eEEEECCCCCCchhHHHhhhhccccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
-++|+||||+||||+++.||+.+.+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 39999999999999999999977443
No 344
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.50 E-value=0.006 Score=67.20 Aligned_cols=29 Identities=24% Similarity=0.554 Sum_probs=26.4
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
.++|+||||+||||++++||+.++.+++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 48999999999999999999999888755
No 345
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.48 E-value=0.02 Score=62.26 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=22.0
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-+.|.||+|||||||++.|++.++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999998775
No 346
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.47 E-value=0.015 Score=62.61 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=23.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
-+.|+||||+|||||+++|++...+..+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred eEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 37899999999999999999988777666654
No 347
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.41 E-value=0.018 Score=62.41 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=26.0
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
-++|.||+|+|||+|+..||..++..++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 3789999999999999999999876555444
No 348
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.41 E-value=0.013 Score=64.78 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=25.1
Q ss_pred hccCCccCce-EEEECCCCCCchhHHHhhhhcc
Q 003000 419 RRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 419 ~~~gl~~~~g-vLL~GPpGtGKTtLakaLA~el 450 (859)
.+..+.++.| ++|+||||+|||||+.+|+..+
T Consensus 15 ~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 15 KNVDIEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445556666 8899999999999999998543
No 349
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.36 E-value=0.014 Score=62.14 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.6
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
-|+|+|++||||||+++.|+ .++.+++.
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 39999999999999999999 56765543
No 350
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.35 E-value=0.014 Score=62.04 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=22.8
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc-cccE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA-GVNF 454 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el-~~~~ 454 (859)
.-|+|.|+||+||||+++.|+..+ +..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~ 31 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEE
Confidence 348999999999999999999853 4433
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.28 E-value=0.024 Score=57.46 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=25.2
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.+++|+||+|+|||+|+..|+.... .++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 4599999999999999999998765 444433
No 352
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.27 E-value=0.0087 Score=60.10 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred EEEECCCCCCchhHHHhhhhcccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~ 452 (859)
|+|.|++|+||||+++.|+..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999988753
No 353
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.26 E-value=0.016 Score=64.11 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=24.8
Q ss_pred eEEEECCCCCCchhHHHhhhhccc-ccEEEeec
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG-VNFFSISA 459 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~-~~~~~is~ 459 (859)
-++|+||||+|||||+++|++... +..+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence 489999999999999999999877 66555543
No 354
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.18 E-value=0.02 Score=58.76 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=20.2
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
+.|.||+|+||||+++.|++.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999987
No 355
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.16 E-value=0.038 Score=65.36 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.1
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
-+++.|||||||||++..+...+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999999988776543
No 356
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.15 E-value=0.006 Score=68.23 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=30.1
Q ss_pred hhhhccCCccCce-EEEECCCCCCchhHHHhhhhcccc
Q 003000 416 EMYRRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 416 ~~~~~~gl~~~~g-vLL~GPpGtGKTtLakaLA~el~~ 452 (859)
..+.++.+.+..| ++|+||||+|||||+++|...++.
T Consensus 49 ~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 49 ATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp TTEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556667777666 899999999999999999887654
No 357
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.14 E-value=0.019 Score=57.01 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.++|+|+||+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999853
No 358
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.12 E-value=0.065 Score=54.05 Aligned_cols=67 Identities=24% Similarity=0.179 Sum_probs=40.2
Q ss_pred EEEECCCCCCch-hHHHhhhhcc--cccEEEeecc---ccchh---hhcc-----cchhhhhHHHHHHhcCCcEEEhhhh
Q 003000 429 ILLCGPPGVGKT-LLAKAVAGEA--GVNFFSISAS---QFVEI---YVGV-----GASRVRSLYQEAKDNAPSVVFIDEL 494 (859)
Q Consensus 429 vLL~GPpGtGKT-tLakaLA~el--~~~~~~is~s---~~~~~---~~g~-----~~~~l~~lfe~a~~~~p~Il~iDEI 494 (859)
.+++||.|+||| .|++++.+.. +.....++.. .+... ..|. .......+++..+ ..++|+|||+
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDEa 100 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDEG 100 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESSG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEch
Confidence 789999999999 7888887643 4555555533 11111 1110 0122234555433 3579999999
Q ss_pred Hhh
Q 003000 495 DAV 497 (859)
Q Consensus 495 d~l 497 (859)
.-+
T Consensus 101 QFf 103 (195)
T 1w4r_A 101 QFF 103 (195)
T ss_dssp GGC
T ss_pred hhh
Confidence 776
No 359
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.12 E-value=0.012 Score=68.21 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=27.8
Q ss_pred hccCC-ccCce--EEEECCCCCCchhHHHh--hhhccc--ccEEEeec
Q 003000 419 RRRGV-RIPGG--ILLCGPPGVGKTLLAKA--VAGEAG--VNFFSISA 459 (859)
Q Consensus 419 ~~~gl-~~~~g--vLL~GPpGtGKTtLaka--LA~el~--~~~~~is~ 459 (859)
.++.+ .++.| ++|+||||+|||||++. +++... ...++++.
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 33344 44544 99999999999999999 566553 23444544
No 360
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.10 E-value=0.013 Score=65.98 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.7
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEe
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 457 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~i 457 (859)
-+.|+||||+|||||+++|+|...+..+.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI 100 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAA 100 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceE
Confidence 389999999999999999999765544444
No 361
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.09 E-value=0.11 Score=58.73 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=28.9
Q ss_pred HHHHhcccchhhhccCCccCceEEEECCCCCCchhHHHhhhhcc
Q 003000 407 EIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 407 ~~v~~~~~~~~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el 450 (859)
++...+.... ..+.+..+..++++|++|+||||++..||+.+
T Consensus 81 ~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp HHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455554322 33444433348899999999999999999876
No 362
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.03 E-value=0.073 Score=54.61 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=17.3
Q ss_pred ceEEEECCCCCCchhHHHhhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVA 447 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA 447 (859)
..+++.||+|||||+++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 348999999999999776654
No 363
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.02 E-value=0.019 Score=56.89 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEECCCCCCchhHHHhhhhcc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el 450 (859)
++|+|+||+|||||++.+++..
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999999864
No 364
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.02 E-value=0.025 Score=63.67 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.5
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccccEE
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
.-|+|+|+||+||||+++.|+..++..++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 34899999999999999999998765443
No 365
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.01 E-value=0.02 Score=63.24 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=26.5
Q ss_pred hhccCCccCce-EEEECCCCCCchhHHHhhhhcc
Q 003000 418 YRRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 418 ~~~~gl~~~~g-vLL~GPpGtGKTtLakaLA~el 450 (859)
+..+.+.++.| .+|+||||+||||++++|+..+
T Consensus 17 ~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 17 LAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 44556666666 7899999999999999998754
No 366
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.93 E-value=0.037 Score=60.55 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.4
Q ss_pred EEEECCCCCCchhHHHhhhhcc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el 450 (859)
+.|+|+||+|||||++.|++.+
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998764
No 367
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.86 E-value=0.023 Score=58.57 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=22.1
Q ss_pred EEEECCCCCCchhHHHhhhhcccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~ 452 (859)
++|.||||+||||+++.|+..++.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 889999999999999999998763
No 368
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.85 E-value=0.026 Score=60.41 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=24.1
Q ss_pred eEEEECCCCCCchhHHHhhhhccc---ccEEEeecccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQF 462 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~---~~~~~is~s~~ 462 (859)
-|.|.||+|+||||+++.|+..++ ..+..+++..+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 389999999999999999998775 33445555544
No 369
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.82 E-value=0.066 Score=60.62 Aligned_cols=35 Identities=37% Similarity=0.366 Sum_probs=26.7
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeecc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISAS 460 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s 460 (859)
|..++|+|++|+||||++..||+.+ +.....+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3459999999999999999999876 3444445443
No 370
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.79 E-value=0.016 Score=62.44 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
++|+||||+|||||++.|++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 599999999999999999875
No 371
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.79 E-value=0.047 Score=66.38 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.8
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++||+|+|||+++..++..
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999988877654
No 372
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.60 E-value=0.029 Score=60.19 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhcccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~ 452 (859)
.-+.|.||+|+|||||++.|++.++.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34899999999999999999998764
No 373
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.59 E-value=0.029 Score=56.70 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=21.5
Q ss_pred Cce-EEEECCCCCCchhHHHhhhhccc
Q 003000 426 PGG-ILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 426 ~~g-vLL~GPpGtGKTtLakaLA~el~ 451 (859)
..+ .+|+||||+||||++.+|.-.+.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344 89999999999999999976543
No 374
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.56 E-value=0.026 Score=58.43 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=27.4
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeeccccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 463 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 463 (859)
.+.|.||||+||||+++.|+..++.+.+ +.+++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdll 43 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDML 43 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHH
Confidence 3789999999999999999999887654 444443
No 375
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.53 E-value=0.024 Score=61.09 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=24.4
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEeec
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 459 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is~ 459 (859)
-+.|+||||+|||||+++|+ ...+..+.+..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 37999999999999999999 77665555543
No 376
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.34 E-value=0.012 Score=66.53 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEECCCCCCchhHHHhhhhccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~ 451 (859)
|+|+||||+|||||++.|++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999999998653
No 377
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.32 E-value=0.012 Score=63.61 Aligned_cols=31 Identities=35% Similarity=0.532 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
-++|+||||+|||||+++|++...+..+.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCCCCHHHHHHHhccccccccccee
Confidence 4899999999999999999998766655554
No 378
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.29 E-value=0.025 Score=61.23 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.5
Q ss_pred EEEECCCCCCchhHHHhhhhcc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el 450 (859)
++|+|++|+|||||++.|++..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 7899999999999999999865
No 379
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.26 E-value=0.096 Score=52.58 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=38.6
Q ss_pred EEEECCCCCCchhHHHhhhhcc---cccEEEeecccc-------chhhhcccc-----hhhhhHHHHHHhcCCcEEEhhh
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQF-------VEIYVGVGA-----SRVRSLYQEAKDNAPSVVFIDE 493 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~-------~~~~~g~~~-----~~l~~lfe~a~~~~p~Il~iDE 493 (859)
.+++||.|+||||.+-.++..+ +.....+...-. +....|... .....+++.+. ...++|+|||
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvViIDE 89 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIAIDE 89 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEEECS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEEEEC
Confidence 7899999999999887777654 444443321100 000112110 11134554443 2467999999
Q ss_pred hHhhh
Q 003000 494 LDAVG 498 (859)
Q Consensus 494 Id~l~ 498 (859)
+..+.
T Consensus 90 aqfl~ 94 (191)
T 1xx6_A 90 VQFFD 94 (191)
T ss_dssp GGGSC
T ss_pred CCCCC
Confidence 87753
No 380
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.23 E-value=0.037 Score=55.90 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=26.6
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
-|.|.|++||||||+++.||..++.+++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48999999999999999999999998873
No 381
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.15 E-value=0.036 Score=53.21 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.1
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
-++|+|+||+|||||++.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
No 382
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.12 E-value=0.032 Score=60.97 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=21.8
Q ss_pred CccCce-EEEECCCCCCchhHHHhhhhcc
Q 003000 423 VRIPGG-ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 423 l~~~~g-vLL~GPpGtGKTtLakaLA~el 450 (859)
+....| .+|+||||+|||+++.+|.-.+
T Consensus 19 i~f~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 334445 7899999999999999986433
No 383
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.01 E-value=0.043 Score=54.33 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.5
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el 450 (859)
.-++|+|++|+|||||++.|++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 458999999999999999999865
No 384
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.98 E-value=0.039 Score=54.00 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.8
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
++|+|++|+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 799999999999999999984
No 385
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.86 E-value=0.044 Score=61.36 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=25.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
-|+|.||+|+|||+|+..||..++..++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 3789999999999999999998876654433
No 386
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.83 E-value=0.0092 Score=61.79 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.0
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEE
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFF 455 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~ 455 (859)
++|+||||+|||||+++|++.+.+..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCC
Confidence 578999999999999999998765443
No 387
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.77 E-value=0.18 Score=58.15 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=25.5
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc---cccEEEeec
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 459 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 459 (859)
+..|+|+|++|+||||++..||..+ +.....+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4459999999999999999999654 444444544
No 388
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.76 E-value=0.041 Score=59.56 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=22.6
Q ss_pred CccCce-EEEECCCCCCchhHHHhhhhcc
Q 003000 423 VRIPGG-ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 423 l~~~~g-vLL~GPpGtGKTtLakaLA~el 450 (859)
+....| .+|+||||+|||+|+.+|...+
T Consensus 20 l~~~~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 20 IGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred EecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence 444344 8999999999999999998654
No 389
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.74 E-value=0.12 Score=58.74 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=27.4
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcc---cccEEEeec
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 459 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 459 (859)
|+....-++|.|+||+|||+|+-.+|... +.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 34433349999999999999998887654 445655554
No 390
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.66 E-value=0.065 Score=53.38 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=27.0
Q ss_pred EEEECCCCCCchhHHHhhhhcccccEEEeeccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 461 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 461 (859)
++++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999987 77777776543
No 391
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.57 E-value=0.23 Score=56.15 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=27.2
Q ss_pred CceEEEECCCCCCchhHHHhhhhcc----cccEEEeeccc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQ 461 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~el----~~~~~~is~s~ 461 (859)
|..++++|++|+||||++-.||..+ |..+.-+++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4558999999999999999998654 44555555553
No 392
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.56 E-value=0.049 Score=52.93 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.2
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999974
No 393
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.54 E-value=0.027 Score=67.31 Aligned_cols=31 Identities=32% Similarity=0.541 Sum_probs=26.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHhhh
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVA 447 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLakaLA 447 (859)
.+.++++.++.| +.|+||||+|||||+++|.
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 356777888877 9999999999999998765
No 394
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.54 E-value=0.072 Score=52.52 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=24.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---cccEEEee
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSIS 458 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---~~~~~~is 458 (859)
-+.|.|++|+|||||+..|+..+ +..+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 48999999999999999999876 34444444
No 395
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.43 E-value=0.07 Score=57.95 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=24.4
Q ss_pred ccCCccC--ceEEEECCCCCCchhHHHhhhhcc
Q 003000 420 RRGVRIP--GGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 420 ~~gl~~~--~gvLL~GPpGtGKTtLakaLA~el 450 (859)
.+.+... .-++|+||+|+||||++..||+.+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444333 349999999999999999999876
No 396
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.40 E-value=0.049 Score=54.15 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=23.3
Q ss_pred hccCCccCce-EEEECCCCCCchhHHHhhhh
Q 003000 419 RRRGVRIPGG-ILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 419 ~~~gl~~~~g-vLL~GPpGtGKTtLakaLA~ 448 (859)
..+++..... ++|+|++|+|||+|++.+.+
T Consensus 17 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 17 QFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3344444433 99999999999999999986
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.38 E-value=0.055 Score=56.56 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=22.0
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-|+|.|++|+||||+++.|+..+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999999883
No 398
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.18 E-value=0.11 Score=59.82 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=27.4
Q ss_pred CCccCceEEEECCCCCCchhHHHhhhhcc----cccEEEeecc
Q 003000 422 GVRIPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISAS 460 (859)
Q Consensus 422 gl~~~~gvLL~GPpGtGKTtLakaLA~el----~~~~~~is~s 460 (859)
|+....-++|.|+||+|||+|+-.+|..+ +.++..++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34333449999999999999998887643 4455555543
No 399
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.94 E-value=0.13 Score=56.52 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
-|+|+|+||+|||||+..|+..+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998765
No 400
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.91 E-value=0.06 Score=52.18 Aligned_cols=21 Identities=38% Similarity=0.768 Sum_probs=19.9
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
++|+|+||+|||||++.+++.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999975
No 401
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.88 E-value=0.067 Score=50.28 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.4
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.++++|++|+|||+|++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998753
No 402
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.85 E-value=0.075 Score=62.85 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=28.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcc---cccEEEeecc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISAS 460 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el---~~~~~~is~s 460 (859)
-|+|+|++|+||||+++.|+..+ +.+++.++..
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 48999999999999999999988 8888877643
No 403
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.84 E-value=0.23 Score=56.24 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=18.8
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
.++.|+||||||+++..++..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT
T ss_pred EEEEcCCCCCHHHHHHHHhcc
Confidence 789999999999999888753
No 404
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.80 E-value=0.069 Score=50.46 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 405
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.75 E-value=0.075 Score=59.88 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.0
Q ss_pred ceEEEECCCCCCchhHHHhhhhccccc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
.-.+|+||||+|||||+++|++.++..
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 348999999999999999999877654
No 406
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.73 E-value=0.061 Score=65.19 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=25.6
Q ss_pred hhhccCCccCceEEEECCCCCCchhHHHhhhhcc
Q 003000 417 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 417 ~~~~~gl~~~~gvLL~GPpGtGKTtLakaLA~el 450 (859)
...++.+. ...++|+||||+|||||+|.|++..
T Consensus 568 vl~disl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 568 VPNDLEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCEEEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred EeeeccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 34455555 4459999999999999999999853
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.71 E-value=0.063 Score=52.89 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.7
Q ss_pred eEEEECCCCCCchhHHHhhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~ 448 (859)
.++++|++|+|||+|++.+.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 408
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.68 E-value=0.071 Score=50.88 Aligned_cols=22 Identities=55% Similarity=0.844 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999874
No 409
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.59 E-value=0.041 Score=64.25 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~ 452 (859)
.++|+|+||+|||||+++|++.++.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHHhhcc
Confidence 3899999999999999999998864
No 410
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.54 E-value=0.076 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 411
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.53 E-value=0.067 Score=50.67 Aligned_cols=22 Identities=50% Similarity=0.875 Sum_probs=19.5
Q ss_pred EEEECCCCCCchhHHHhhhhcc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el 450 (859)
++|+|++|+|||+|++.+.+..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7999999999999999998643
No 412
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.45 E-value=0.077 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.3
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el 450 (859)
..++|+|++|+|||||+..+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 413
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.41 E-value=0.11 Score=58.04 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~ 448 (859)
.+.|+|+||+|||||+++|++
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 389999999999999999998
No 414
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.41 E-value=0.074 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 415
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.41 E-value=0.082 Score=61.29 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.3
Q ss_pred eEEEECCCCCCchhHHHhhhhcccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~ 452 (859)
-|+|+|.||+||||+++.|+..++.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3899999999999999999988743
No 416
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.38 E-value=0.082 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999863
No 417
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.36 E-value=0.082 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 418
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.36 E-value=0.064 Score=59.28 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=23.5
Q ss_pred hccCCccCce-EEEECCCCCCchhHHHhhhh
Q 003000 419 RRRGVRIPGG-ILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 419 ~~~gl~~~~g-vLL~GPpGtGKTtLakaLA~ 448 (859)
....+....| .+|+||||+|||+++.||.-
T Consensus 17 ~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3344455556 89999999999999999974
No 419
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.30 E-value=0.13 Score=51.08 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=18.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~e 449 (859)
+.+++.+|+|+|||..+-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999988776653
No 420
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.30 E-value=0.083 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.++++|++|+|||+|++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 421
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.27 E-value=0.083 Score=50.14 Aligned_cols=21 Identities=43% Similarity=0.741 Sum_probs=19.2
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
++|+|++|+|||+|++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 799999999999999999753
No 422
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.27 E-value=0.085 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||+|++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 423
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.20 E-value=0.11 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999863
No 424
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.13 E-value=0.088 Score=54.16 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=26.3
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEE
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 456 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~ 456 (859)
-|.|.|++||||||+++.||..++.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 38999999999999999999999988754
No 425
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.10 E-value=0.089 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||+|++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 426
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.10 E-value=0.084 Score=50.54 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 427
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.06 E-value=0.084 Score=50.00 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.8
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||+|++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 428
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.04 E-value=0.091 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 429
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.99 E-value=0.091 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.++|+|++|+|||+|+..+++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 430
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.95 E-value=0.094 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+++|++|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 431
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.93 E-value=0.096 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||+|++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999863
No 432
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.83 E-value=0.099 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.4
Q ss_pred eEEEECCCCCCchhHHHhhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~ 448 (859)
.++|+|++|+|||+|++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999986
No 433
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.75 E-value=0.087 Score=55.36 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.7
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.|+|+|+||+|||||+++|.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 434
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=90.73 E-value=0.56 Score=41.05 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=47.9
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003000 224 EELEKMREESEMMEKAMDMQKKEEERR---RKKEIRLQKYEESLQDARDNYRYMANVWEN 280 (859)
Q Consensus 224 ~e~~~~p~~~~~l~~~~~~l~~e~~~~---~~~~~rl~~l~~el~~~~~~~~~l~~~w~~ 280 (859)
.+++.+|.+|+.++.++..|..+...- .+..+++.++..++..++.++..+..+|..
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999988876532 233449999999999999999999999974
No 435
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.71 E-value=0.094 Score=57.59 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEECCCCCCchhHHHhhhhcc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el 450 (859)
+.|+|+||+|||||+++|++.+
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999865
No 436
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.69 E-value=0.12 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=22.0
Q ss_pred eEEEECCCCCCchhHHHhhhhccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~ 451 (859)
-|+|.|++|+||||+++.|+..++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999884
No 437
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.68 E-value=0.11 Score=49.74 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+|++|+|||+|++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 438
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.65 E-value=0.1 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.8
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.|+|+|++|+|||||+++|.+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 38999999999999999999854
No 439
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.63 E-value=0.11 Score=52.98 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=25.9
Q ss_pred eEEEECCCCCCchhHHHhhhhcccccEEEee
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 458 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~~~~~is 458 (859)
.|.|+|..||||||+++.++. +|.+++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 489999999999999999997 888776544
No 440
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.62 E-value=0.1 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 441
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.62 E-value=0.3 Score=49.91 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.0
Q ss_pred EEEECCCCCCchhHHHhhhhcc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el 450 (859)
.+++||.|+||||.+-.++..+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6789999999999887776544
No 442
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.56 E-value=0.11 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
++++|++|+|||+|++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 799999999999999999763
No 443
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.54 E-value=0.1 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCchhHHHhhhhc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|++|.|++|+||||++-.+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46999999999999999998764
No 444
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.53 E-value=0.097 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCchhHHHhhhhc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~e 449 (859)
..++|+|++|+|||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34999999999999999999875
No 445
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.49 E-value=0.11 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||||++.+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 446
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.46 E-value=0.23 Score=58.93 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=15.9
Q ss_pred EEEECCCCCCchhHHHhhhh
Q 003000 429 ILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~ 448 (859)
.+|.||||||||+++-.+..
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~ 227 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIIL 227 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 68999999999986654443
No 447
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.45 E-value=0.11 Score=50.58 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 448
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.41 E-value=0.11 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
No 449
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.40 E-value=0.24 Score=56.52 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=51.8
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003000 220 RQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEI--RLQKYEESLQDARDNYRYMANVWENLAK 283 (859)
Q Consensus 220 ~~~~~e~~~~p~~~~~l~~~~~~l~~e~~~~~~~~~--rl~~l~~el~~~~~~~~~l~~~w~~ek~ 283 (859)
...+.+..+.|.+++++++++.+++.+.+......| +++++++++..++++++.+..+|+.+..
T Consensus 383 ~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (468)
T 3pxg_A 383 SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQG 448 (468)
T ss_dssp HHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344557788899999999999999988887666555 8899999999999999988888876543
No 450
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.39 E-value=0.1 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.1
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999875
No 451
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.36 E-value=0.12 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||+|++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999763
No 452
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.33 E-value=0.12 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 453
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.31 E-value=0.11 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.8
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999853
No 454
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.29 E-value=0.1 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||+|++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3799999999999999999874
No 455
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.26 E-value=0.1 Score=50.86 Aligned_cols=22 Identities=50% Similarity=0.585 Sum_probs=20.4
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+|++|+|||+|++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999875
No 456
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.23 E-value=0.12 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.1
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+++|++|+|||||++.+++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 457
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=90.22 E-value=0.099 Score=58.87 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=23.5
Q ss_pred cCCccCce--EEEECCCCCCchhHHHhhhhc
Q 003000 421 RGVRIPGG--ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 421 ~gl~~~~g--vLL~GPpGtGKTtLakaLA~e 449 (859)
+.+.+..+ +.|+|+||+|||||+++|++.
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 33444444 999999999999999999986
No 458
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.09 E-value=0.12 Score=58.92 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.++|+||+|+|||+|++.|+...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 38999999999999999998754
No 459
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.07 E-value=0.14 Score=57.07 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=23.1
Q ss_pred CccCce--EEEECCCCCCchhHHHhhhhcc
Q 003000 423 VRIPGG--ILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 423 l~~~~g--vLL~GPpGtGKTtLakaLA~el 450 (859)
+.+.+| ++|+||+|+|||+|++.|++.+
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 344444 9999999999999999999864
No 460
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.05 E-value=0.13 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3899999999999999999864
No 461
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.03 E-value=0.13 Score=50.02 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.6
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.|+|+|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 38999999999999999998754
No 462
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.02 E-value=0.59 Score=46.08 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=14.0
Q ss_pred ceEEEECCCCCCchhH
Q 003000 427 GGILLCGPPGVGKTLL 442 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtL 442 (859)
+.+++.+|+|+|||..
T Consensus 39 ~~~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLA 54 (207)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CCEEEECCCCChHHHH
Confidence 3589999999999986
No 463
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.99 E-value=0.097 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.9
Q ss_pred ceEEEECCCCCCchhHHHhhhh
Q 003000 427 GGILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~ 448 (859)
..++++|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999985
No 464
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.99 E-value=0.11 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.2
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999875
No 465
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.96 E-value=0.13 Score=49.43 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 466
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.91 E-value=0.12 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||+|++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
No 467
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.82 E-value=0.13 Score=49.20 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+|++|+|||+|++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 468
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.81 E-value=0.12 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 469
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.80 E-value=0.13 Score=51.05 Aligned_cols=20 Identities=45% Similarity=0.825 Sum_probs=19.0
Q ss_pred EEEECCCCCCchhHHHhhhh
Q 003000 429 ILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~ 448 (859)
|+|+|++|+|||+|++.+++
T Consensus 26 i~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEECSTTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999999975
No 470
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.75 E-value=0.13 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEECCCCCCchhHHHhhhhccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~ 451 (859)
|.|.|++|+||||+++.|+..+.
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998764
No 471
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.72 E-value=0.12 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=18.2
Q ss_pred EEEECCCCCCchhHHHhhhhccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAG 451 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~ 451 (859)
|.|.||+|+||||+++.|+..+.
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998773
No 472
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.67 E-value=0.15 Score=59.77 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=27.4
Q ss_pred eEEEECCCCCCchhHHHhhhhccc----ccEEEeecc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAG----VNFFSISAS 460 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~----~~~~~is~s 460 (859)
-|+|+|++|+||||++++|+..++ .+++.++..
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 389999999999999999999876 566666643
No 473
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.67 E-value=0.13 Score=55.10 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=20.1
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
++|+|+||+|||||+++|.+.
T Consensus 11 VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 11 IAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999985
No 474
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.61 E-value=0.14 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCchhHHHhhhhcc
Q 003000 427 GGILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 427 ~gvLL~GPpGtGKTtLakaLA~el 450 (859)
..++++|++|+|||+|++.+.+.-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 348999999999999999998643
No 475
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.58 E-value=0.14 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 476
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.57 E-value=0.14 Score=49.85 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 477
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.53 E-value=0.15 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.6
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||+|++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999753
No 478
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.51 E-value=0.14 Score=50.25 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 479
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.39 E-value=0.099 Score=59.67 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.4
Q ss_pred eEEEECCCCCCchhHHHhhhhcccc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEAGV 452 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el~~ 452 (859)
-|+|+|.||+||||+++.|+..++.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4899999999999999999987653
No 480
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.37 E-value=0.15 Score=49.68 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.1
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 481
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.36 E-value=0.15 Score=50.19 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 482
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.36 E-value=0.15 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 483
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.26 E-value=0.15 Score=49.83 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.9
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
|+|+|++|+|||+|++.+.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999877653
No 484
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.24 E-value=0.13 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.0
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.++|+|++|+|||||+..|++.+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999875
No 485
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.09 E-value=0.24 Score=54.83 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred CceEEEECCCCCCchhHHHhhhhc
Q 003000 426 PGGILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 426 ~~gvLL~GPpGtGKTtLakaLA~e 449 (859)
..+++++||+|+|||++++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 345999999999999999999864
No 486
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.07 E-value=0.17 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++++|++|+|||+|++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 487
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=89.06 E-value=0.07 Score=65.21 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=28.4
Q ss_pred hhhccCCccCce--EEEECCCCCCchhHHHh-hhhcc
Q 003000 417 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKA-VAGEA 450 (859)
Q Consensus 417 ~~~~~gl~~~~g--vLL~GPpGtGKTtLaka-LA~el 450 (859)
.++++++.+|.| +.|+|+||+|||||++. |++.+
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 356778888888 99999999999999997 76543
No 488
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.03 E-value=0.15 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEEECCCCCCchhHHHhhhhcc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGEA 450 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~el 450 (859)
.|+|+|++|+|||+|++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999998743
No 489
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.01 E-value=0.15 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.9
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 490
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.99 E-value=0.16 Score=54.56 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=19.9
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
|.|+|+||+|||||+++|.+.
T Consensus 13 v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 999999999999999999874
No 491
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.98 E-value=0.17 Score=49.21 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 492
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.96 E-value=0.17 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.1
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 493
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.95 E-value=0.17 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
|+|+|++|+|||+|++.+.+.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999863
No 494
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.95 E-value=0.16 Score=53.77 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.2
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|+||+|||||++++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999974
No 495
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.91 E-value=0.13 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=20.0
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.++|+|++|+|||+|++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 496
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.90 E-value=0.17 Score=49.94 Aligned_cols=21 Identities=48% Similarity=0.765 Sum_probs=19.4
Q ss_pred eEEEECCCCCCchhHHHhhhh
Q 003000 428 GILLCGPPGVGKTLLAKAVAG 448 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~ 448 (859)
-|+|+|++|+|||+|++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999986
No 497
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.88 E-value=0.17 Score=49.50 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.3
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
|+|+|++|+|||+|++.+.+.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 899999999999999998763
No 498
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.86 E-value=0.21 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.8
Q ss_pred EEEECCCCCCchhHHHhhhhccccc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGEAGVN 453 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~el~~~ 453 (859)
|.|.|++|+||||+++.|+..++..
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhccc
Confidence 8899999999999999999988753
No 499
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.85 E-value=0.17 Score=49.48 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred eEEEECCCCCCchhHHHhhhhc
Q 003000 428 GILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 428 gvLL~GPpGtGKTtLakaLA~e 449 (859)
.|+|+|++|+|||+|++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
No 500
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.84 E-value=0.17 Score=49.39 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEECCCCCCchhHHHhhhhc
Q 003000 429 ILLCGPPGVGKTLLAKAVAGE 449 (859)
Q Consensus 429 vLL~GPpGtGKTtLakaLA~e 449 (859)
|+|+|++|+|||+|++.+.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
Done!