Query 003001
Match_columns 859
No_of_seqs 308 out of 1102
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 15:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2103 Uncharacterized conser 100.0 5E-125 1E-129 1062.4 61.9 751 19-859 14-788 (910)
2 PF07774 DUF1620: Protein of u 99.9 2.1E-23 4.5E-28 215.2 8.0 89 762-859 1-93 (217)
3 PRK11138 outer membrane biogen 99.9 1.5E-19 3.3E-24 205.8 35.1 214 28-258 43-278 (394)
4 TIGR03300 assembly_YfgL outer 99.8 2.7E-17 5.8E-22 186.1 35.7 234 6-258 6-263 (377)
5 PRK11138 outer membrane biogen 99.8 1.9E-16 4.1E-21 180.4 29.9 216 26-258 86-316 (394)
6 PF13360 PQQ_2: PQQ-like domai 99.7 1E-15 2.2E-20 161.0 28.2 217 23-258 7-234 (238)
7 TIGR03300 assembly_YfgL outer 99.7 1.3E-14 2.8E-19 164.2 30.7 214 24-258 80-301 (377)
8 cd00216 PQQ_DH Dehydrogenases 99.6 3.8E-14 8.3E-19 165.8 25.7 231 25-265 126-434 (488)
9 cd00216 PQQ_DH Dehydrogenases 99.6 2.3E-14 4.9E-19 167.7 23.5 225 27-257 37-322 (488)
10 PF13360 PQQ_2: PQQ-like domai 99.6 2.3E-13 5E-18 143.1 23.3 180 61-257 1-194 (238)
11 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.5 1.3E-12 2.7E-17 153.8 23.5 222 29-257 47-336 (527)
12 TIGR03074 PQQ_membr_DH membran 99.5 2.1E-12 4.6E-17 156.2 24.3 208 49-257 190-480 (764)
13 COG1520 FOG: WD40-like repeat 99.5 2.5E-12 5.4E-17 145.4 23.0 217 26-257 40-271 (370)
14 TIGR03074 PQQ_membr_DH membran 99.3 7.4E-11 1.6E-15 142.9 21.4 191 25-220 210-487 (764)
15 COG1520 FOG: WD40-like repeat 99.3 8E-11 1.7E-15 133.2 19.9 186 24-221 83-279 (370)
16 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.3 7.5E-11 1.6E-15 138.9 19.9 189 25-218 85-341 (527)
17 KOG4649 PQQ (pyrrolo-quinoline 98.9 7E-08 1.5E-12 99.5 18.4 155 53-223 23-180 (354)
18 KOG4649 PQQ (pyrrolo-quinoline 98.7 4.9E-06 1.1E-10 86.2 23.4 177 25-223 39-219 (354)
19 COG4993 Gcd Glucose dehydrogen 98.7 7.5E-07 1.6E-11 101.5 18.3 205 52-257 213-491 (773)
20 COG4993 Gcd Glucose dehydrogen 97.8 0.00037 8.1E-09 80.1 14.7 165 52-218 271-496 (773)
21 PF01011 PQQ: PQQ enzyme repea 97.6 0.00012 2.5E-09 54.7 4.6 31 54-84 1-31 (38)
22 TIGR03866 PQQ_ABC_repeats PQQ- 97.5 0.21 4.5E-06 53.4 34.5 182 56-257 4-190 (300)
23 PF02239 Cytochrom_D1: Cytochr 97.4 0.43 9.4E-06 54.2 34.2 192 20-220 17-212 (369)
24 TIGR03866 PQQ_ABC_repeats PQQ- 97.3 0.31 6.6E-06 52.1 31.1 189 52-257 41-240 (300)
25 PF05096 Glu_cyclase_2: Glutam 97.3 0.034 7.3E-07 59.5 21.3 154 52-220 54-213 (264)
26 cd00200 WD40 WD40 domain, foun 97.2 0.2 4.4E-06 51.7 25.5 187 53-257 63-252 (289)
27 cd00200 WD40 WD40 domain, foun 97.2 0.27 5.9E-06 50.8 26.3 187 52-257 20-210 (289)
28 PF02239 Cytochrom_D1: Cytochr 97.0 0.53 1.1E-05 53.5 28.8 157 54-223 6-171 (369)
29 TIGR02658 TTQ_MADH_Hv methylam 97.0 0.17 3.7E-06 56.9 23.6 211 49-263 53-338 (352)
30 smart00564 PQQ beta-propeller 96.9 0.0011 2.5E-08 47.4 3.6 27 53-79 6-32 (33)
31 PF13570 PQQ_3: PQQ-like domai 96.9 0.0017 3.7E-08 48.9 4.6 40 73-115 1-40 (40)
32 PTZ00421 coronin; Provisional 96.9 0.2 4.3E-06 59.2 23.9 196 52-257 87-293 (493)
33 PF13570 PQQ_3: PQQ-like domai 96.8 0.0024 5.3E-08 48.1 5.1 40 29-72 1-40 (40)
34 TIGR02658 TTQ_MADH_Hv methylam 96.8 1.4 3.1E-05 49.6 34.0 192 52-257 11-226 (352)
35 PF10282 Lactonase: Lactonase, 96.7 1.5 3.2E-05 49.3 32.5 227 25-253 21-274 (345)
36 PF01011 PQQ: PQQ enzyme repea 96.7 0.0036 7.8E-08 46.7 5.1 32 98-129 2-33 (38)
37 KOG2103 Uncharacterized conser 96.3 0.11 2.4E-06 62.1 16.7 199 21-246 59-267 (910)
38 PF10282 Lactonase: Lactonase, 96.1 3.2 7E-05 46.6 37.2 195 56-257 2-227 (345)
39 KOG0296 Angio-associated migra 96.0 0.32 6.9E-06 53.4 17.0 157 51-219 200-365 (399)
40 PTZ00420 coronin; Provisional 96.0 2.3 5E-05 51.0 26.0 191 53-257 87-296 (568)
41 smart00564 PQQ beta-propeller 96.0 0.012 2.6E-07 42.0 4.3 30 94-123 4-33 (33)
42 PF05935 Arylsulfotrans: Aryls 95.6 0.28 6.1E-06 57.7 16.2 151 53-219 113-310 (477)
43 KOG0278 Serine/threonine kinas 95.6 0.52 1.1E-05 49.5 15.8 144 53-223 155-301 (334)
44 KOG2048 WD40 repeat protein [G 95.1 5.7 0.00012 47.2 23.8 189 52-257 36-236 (691)
45 KOG1539 WD repeat protein [Gen 94.8 6.2 0.00013 48.0 23.6 145 96-254 173-318 (910)
46 PRK11028 6-phosphogluconolacto 94.8 8.1 0.00018 42.7 26.9 194 51-255 44-259 (330)
47 PLN02919 haloacid dehalogenase 94.4 3.9 8.4E-05 52.9 22.6 197 53-257 635-891 (1057)
48 KOG0318 WD40 repeat stress pro 94.2 14 0.00031 42.9 32.5 153 50-214 199-354 (603)
49 PHA02713 hypothetical protein; 93.9 3.5 7.6E-05 49.6 19.8 173 52-241 302-519 (557)
50 PTZ00421 coronin; Provisional 93.7 7 0.00015 46.3 21.4 155 53-218 138-298 (493)
51 KOG0296 Angio-associated migra 93.7 14 0.00031 41.1 27.9 151 52-219 75-229 (399)
52 COG3823 Glutamine cyclotransfe 93.6 1.8 4E-05 44.6 13.8 77 52-129 54-134 (262)
53 KOG2048 WD40 repeat protein [G 93.3 5.1 0.00011 47.6 18.7 154 52-219 121-284 (691)
54 PF06433 Me-amine-dh_H: Methyl 93.0 18 0.00039 40.4 24.3 194 51-257 104-323 (342)
55 PLN00181 protein SPA1-RELATED; 92.9 33 0.00072 43.1 27.5 189 52-255 494-691 (793)
56 PHA03098 kelch-like protein; P 92.8 11 0.00023 45.0 21.5 189 53-257 294-514 (534)
57 PHA02790 Kelch-like protein; P 92.7 12 0.00026 44.1 21.4 169 52-241 270-453 (480)
58 KOG0316 Conserved WD40 repeat- 92.5 16 0.00035 38.5 20.5 182 40-257 19-216 (307)
59 COG4257 Vgb Streptogramin lyas 91.9 10 0.00022 40.8 17.1 197 49-266 69-272 (353)
60 KOG2055 WD40 repeat protein [G 91.8 13 0.00028 42.5 18.7 198 39-255 214-418 (514)
61 TIGR03548 mutarot_permut cycli 91.8 24 0.00052 39.1 21.4 136 53-197 72-232 (323)
62 KOG1539 WD repeat protein [Gen 91.4 17 0.00037 44.4 20.0 155 49-215 168-325 (910)
63 PF05935 Arylsulfotrans: Aryls 91.2 2.5 5.4E-05 49.8 13.4 115 94-220 112-241 (477)
64 KOG0291 WD40-repeat-containing 91.2 43 0.00092 40.8 33.9 97 153-257 371-469 (893)
65 PF14269 Arylsulfotran_2: Aryl 91.2 4.3 9.3E-05 44.8 14.5 150 62-219 95-297 (299)
66 KOG0266 WD40 repeat-containing 91.2 23 0.00051 41.4 21.5 154 52-219 214-373 (456)
67 TIGR03548 mutarot_permut cycli 91.1 28 0.00061 38.5 21.9 146 64-219 40-201 (323)
68 KOG0316 Conserved WD40 repeat- 90.8 24 0.00053 37.2 22.5 144 95-257 29-176 (307)
69 PRK14131 N-acetylneuraminic ac 90.8 28 0.00061 39.5 21.2 70 53-124 38-122 (376)
70 PF08450 SGL: SMP-30/Gluconola 90.0 28 0.0006 36.7 26.0 142 53-210 11-164 (246)
71 PLN02919 haloacid dehalogenase 89.9 17 0.00038 47.1 20.3 159 53-215 694-893 (1057)
72 KOG0649 WD40 repeat protein [G 89.7 30 0.00066 36.7 18.0 158 96-265 72-245 (325)
73 KOG3881 Uncharacterized conser 89.5 16 0.00034 41.0 16.5 154 50-217 112-284 (412)
74 PF05096 Glu_cyclase_2: Glutam 89.4 6.4 0.00014 42.4 13.3 114 51-172 97-213 (264)
75 KOG0310 Conserved WD40 repeat- 89.1 17 0.00037 41.8 16.8 151 52-219 121-277 (487)
76 PF14269 Arylsulfotran_2: Aryl 89.1 5.9 0.00013 43.7 13.3 115 53-172 154-298 (299)
77 KOG0291 WD40-repeat-containing 88.9 65 0.0014 39.3 24.6 108 98-218 364-474 (893)
78 PTZ00420 coronin; Provisional 88.7 24 0.00052 42.6 18.9 69 56-126 141-209 (568)
79 KOG0274 Cdc4 and related F-box 88.6 35 0.00077 40.9 20.2 180 53-256 218-402 (537)
80 TIGR03547 muta_rot_YjhT mutatr 88.1 43 0.00093 37.3 19.8 162 53-223 17-238 (346)
81 PLN00181 protein SPA1-RELATED; 87.9 85 0.0018 39.5 29.7 105 53-166 545-652 (793)
82 KOG0315 G-protein beta subunit 87.4 44 0.00095 35.7 20.6 136 98-257 11-157 (311)
83 KOG0319 WD40-repeat-containing 87.1 81 0.0018 38.4 25.6 194 51-257 72-314 (775)
84 KOG0278 Serine/threonine kinas 87.0 13 0.00027 39.5 13.1 108 95-218 154-262 (334)
85 PHA02713 hypothetical protein; 85.8 34 0.00073 41.3 18.2 162 64-241 273-470 (557)
86 PRK11028 6-phosphogluconolacto 85.8 61 0.0013 35.7 32.3 188 55-255 3-206 (330)
87 PRK05137 tolB translocation pr 85.3 79 0.0017 36.6 24.0 189 51-257 211-415 (435)
88 PHA02790 Kelch-like protein; P 85.0 29 0.00063 40.9 16.9 147 52-213 317-473 (480)
89 PRK04922 tolB translocation pr 85.0 82 0.0018 36.5 22.9 150 51-215 213-373 (433)
90 KOG0310 Conserved WD40 repeat- 84.9 24 0.00052 40.6 15.1 146 53-215 79-230 (487)
91 KOG1446 Histone H3 (Lys4) meth 84.9 66 0.0014 35.3 22.1 216 20-257 37-265 (311)
92 KOG1445 Tumor-specific antigen 84.5 1.6 3.5E-05 51.0 5.8 149 52-218 639-808 (1012)
93 PRK04792 tolB translocation pr 83.9 94 0.002 36.3 23.6 148 51-214 227-386 (448)
94 PF06433 Me-amine-dh_H: Methyl 83.5 82 0.0018 35.4 19.4 157 50-221 44-224 (342)
95 KOG0266 WD40 repeat-containing 83.5 42 0.0009 39.3 17.3 154 52-219 257-418 (456)
96 KOG1274 WD40 repeat protein [G 82.3 61 0.0013 40.3 17.7 186 52-255 65-263 (933)
97 PF14727 PHTB1_N: PTHB1 N-term 82.1 19 0.00041 41.6 13.3 94 31-129 231-331 (418)
98 KOG0275 Conserved WD40 repeat- 82.0 12 0.00026 40.8 10.7 185 60-257 272-470 (508)
99 KOG4547 WD40 repeat-containing 82.0 37 0.00079 40.0 15.3 106 145-258 69-176 (541)
100 KOG0270 WD40 repeat-containing 81.8 42 0.00091 38.4 15.2 117 98-230 258-380 (463)
101 TIGR03547 muta_rot_YjhT mutatr 81.2 97 0.0021 34.5 20.2 165 52-227 62-313 (346)
102 COG4257 Vgb Streptogramin lyas 81.0 64 0.0014 35.0 15.4 194 53-266 114-315 (353)
103 PRK03629 tolB translocation pr 80.7 1.2E+02 0.0025 35.2 23.0 150 51-215 208-368 (429)
104 COG3391 Uncharacterized conser 80.2 1.1E+02 0.0025 34.8 19.4 157 51-218 125-291 (381)
105 KOG2321 WD40 repeat protein [G 80.2 42 0.00092 39.6 14.8 188 56-253 148-342 (703)
106 KOG0649 WD40 repeat protein [G 79.8 89 0.0019 33.3 17.1 104 59-170 77-194 (325)
107 COG2706 3-carboxymuconate cycl 78.6 1.2E+02 0.0026 34.0 26.0 205 46-254 44-274 (346)
108 KOG0303 Actin-binding protein 78.2 40 0.00086 38.1 13.4 70 53-125 144-214 (472)
109 PF14870 PSII_BNR: Photosynthe 78.2 1.2E+02 0.0025 33.7 19.3 181 23-219 83-268 (302)
110 KOG4441 Proteins containing BT 76.5 55 0.0012 39.6 15.4 173 53-241 284-482 (571)
111 KOG0285 Pleiotropic regulator 76.0 1.4E+02 0.0031 33.5 18.2 233 54-314 206-441 (460)
112 KOG0318 WD40 repeat stress pro 75.1 1.8E+02 0.0039 34.3 28.3 106 94-214 289-396 (603)
113 PHA03098 kelch-like protein; P 74.6 1.1E+02 0.0023 36.5 17.3 135 93-240 292-443 (534)
114 KOG0286 G-protein beta subunit 72.9 1.5E+02 0.0033 32.5 15.8 152 52-216 155-309 (343)
115 PLN02193 nitrile-specifier pro 72.6 1.6E+02 0.0035 34.6 17.9 136 52-196 227-385 (470)
116 KOG4547 WD40 repeat-containing 72.4 1.9E+02 0.0041 34.4 17.5 115 53-175 70-185 (541)
117 PRK00178 tolB translocation pr 72.3 1.9E+02 0.0041 33.3 22.9 148 51-214 208-367 (430)
118 KOG4499 Ca2+-binding protein R 72.2 59 0.0013 34.5 12.1 115 105-236 138-265 (310)
119 KOG1274 WD40 repeat protein [G 71.7 90 0.0019 38.9 15.2 121 52-174 107-230 (933)
120 KOG0282 mRNA splicing factor [ 71.7 8.2 0.00018 44.3 6.3 73 52-125 269-341 (503)
121 KOG1036 Mitotic spindle checkp 71.3 1.3E+02 0.0028 33.1 14.8 136 98-257 27-166 (323)
122 PLN00033 photosystem II stabil 70.7 2.1E+02 0.0045 33.1 20.9 171 29-219 73-275 (398)
123 smart00108 B_lectin Bulb-type 70.6 34 0.00073 31.8 9.4 81 63-170 30-111 (114)
124 COG3823 Glutamine cyclotransfe 70.3 41 0.00089 35.1 10.3 113 52-172 99-214 (262)
125 PLN02193 nitrile-specifier pro 70.0 2.3E+02 0.005 33.3 22.5 157 52-219 174-358 (470)
126 PRK00178 tolB translocation pr 69.9 2.1E+02 0.0046 32.9 23.2 186 54-257 164-366 (430)
127 KOG0275 Conserved WD40 repeat- 69.8 77 0.0017 34.9 12.7 181 26-220 282-477 (508)
128 cd00028 B_lectin Bulb-type man 69.2 32 0.00069 32.1 8.9 80 64-170 32-112 (116)
129 KOG0270 WD40 repeat-containing 67.4 1.1E+02 0.0024 35.1 13.9 96 28-129 266-376 (463)
130 KOG0303 Actin-binding protein 67.2 65 0.0014 36.5 11.8 92 97-199 145-238 (472)
131 PRK14131 N-acetylneuraminic ac 66.9 2.3E+02 0.0049 32.1 20.3 51 52-104 83-148 (376)
132 PRK05137 tolB translocation pr 66.7 2.5E+02 0.0054 32.5 23.0 108 94-214 212-326 (435)
133 TIGR02800 propeller_TolB tol-p 65.8 2.4E+02 0.0052 32.0 23.5 149 51-214 199-358 (417)
134 KOG4441 Proteins containing BT 65.4 2E+02 0.0043 34.9 16.8 151 52-219 331-506 (571)
135 COG3391 Uncharacterized conser 65.4 2.5E+02 0.0054 32.0 22.7 190 52-257 84-286 (381)
136 PLN02153 epithiospecifier prot 65.4 2.3E+02 0.0049 31.6 23.3 197 52-257 31-287 (341)
137 PRK13684 Ycf48-like protein; P 65.1 2.3E+02 0.0051 31.6 18.2 179 21-218 109-294 (334)
138 PF08450 SGL: SMP-30/Gluconola 65.1 1.8E+02 0.004 30.4 27.1 145 95-255 11-165 (246)
139 PLN02153 epithiospecifier prot 64.5 2.4E+02 0.0051 31.4 18.0 156 52-218 84-290 (341)
140 KOG0315 G-protein beta subunit 64.1 2.1E+02 0.0046 30.7 19.6 61 52-114 94-154 (311)
141 KOG0282 mRNA splicing factor [ 63.7 58 0.0013 37.6 10.9 141 98-256 228-374 (503)
142 PRK02888 nitrous-oxide reducta 63.1 1.9E+02 0.0041 35.2 15.5 143 54-216 205-357 (635)
143 PF14727 PHTB1_N: PTHB1 N-term 63.0 3E+02 0.0064 32.0 20.9 189 53-257 145-363 (418)
144 PRK04043 tolB translocation pr 62.3 3E+02 0.0065 31.9 23.1 147 51-214 197-361 (419)
145 KOG0265 U5 snRNP-specific prot 62.2 2.5E+02 0.0053 31.0 14.6 60 95-162 101-163 (338)
146 PF05567 Neisseria_PilC: Neiss 61.9 73 0.0016 35.8 11.5 167 38-214 1-243 (335)
147 PF06977 SdiA-regulated: SdiA- 61.5 2.3E+02 0.0051 30.4 20.3 187 52-252 32-239 (248)
148 KOG2106 Uncharacterized conser 60.6 3.4E+02 0.0074 32.0 22.9 218 53-310 257-487 (626)
149 KOG2055 WD40 repeat protein [G 60.4 84 0.0018 36.3 11.3 78 49-128 311-388 (514)
150 PF14870 PSII_BNR: Photosynthe 59.9 2.8E+02 0.006 30.8 15.4 169 20-198 123-296 (302)
151 KOG1272 WD40-repeat-containing 58.9 26 0.00057 40.2 7.1 180 53-255 141-324 (545)
152 KOG2106 Uncharacterized conser 58.0 3.2E+02 0.0068 32.2 15.3 133 55-215 341-483 (626)
153 PRK13684 Ycf48-like protein; P 56.3 3.3E+02 0.0071 30.5 22.1 186 8-219 16-209 (334)
154 KOG0292 Vesicle coat complex C 56.2 5.2E+02 0.011 32.7 20.2 125 56-211 220-349 (1202)
155 COG3386 Gluconolactonase [Carb 55.2 3.3E+02 0.0072 30.2 15.1 58 98-166 39-97 (307)
156 PRK03629 tolB translocation pr 53.4 4.1E+02 0.0089 30.7 23.6 148 94-257 209-366 (429)
157 KOG0271 Notchless-like WD40 re 53.4 59 0.0013 36.7 8.5 110 50-167 166-281 (480)
158 KOG0293 WD40 repeat-containing 52.7 3E+02 0.0065 31.6 13.8 85 36-122 264-349 (519)
159 KOG4499 Ca2+-binding protein R 52.0 99 0.0022 32.9 9.4 78 96-177 170-256 (310)
160 KOG4378 Nuclear protein COP1 [ 51.9 3.6E+02 0.0079 31.7 14.5 142 55-211 135-281 (673)
161 KOG1027 Serine/threonine prote 51.0 60 0.0013 40.3 8.8 109 52-177 106-216 (903)
162 KOG0295 WD40 repeat-containing 50.8 3.6E+02 0.0078 30.5 13.9 147 94-257 204-367 (406)
163 KOG0289 mRNA splicing factor [ 49.6 3.1E+02 0.0068 31.7 13.4 153 43-207 352-505 (506)
164 KOG0639 Transducin-like enhanc 49.0 2.3E+02 0.005 33.3 12.4 116 94-222 475-593 (705)
165 PF01453 B_lectin: D-mannose b 48.8 1.1E+02 0.0023 28.7 8.5 60 95-170 19-78 (114)
166 KOG1445 Tumor-specific antigen 48.7 1.8E+02 0.0038 35.1 11.6 60 94-162 139-200 (1012)
167 KOG0263 Transcription initiati 48.3 1.3E+02 0.0028 36.8 10.9 64 102-173 553-618 (707)
168 smart00108 B_lectin Bulb-type 48.2 1.8E+02 0.0039 26.8 10.0 52 107-173 31-82 (114)
169 KOG0646 WD40 repeat protein [G 47.9 1.7E+02 0.0038 33.8 11.3 31 94-124 90-121 (476)
170 TIGR02276 beta_rpt_yvtn 40-res 46.5 52 0.0011 24.0 5.0 31 52-82 2-33 (42)
171 KOG3881 Uncharacterized conser 46.0 35 0.00075 38.5 5.4 74 51-124 257-330 (412)
172 KOG0306 WD40-repeat-containing 45.9 6.8E+02 0.015 31.1 27.2 105 56-171 339-451 (888)
173 PF05262 Borrelia_P83: Borreli 45.9 1.3E+02 0.0028 35.6 10.3 97 153-256 374-472 (489)
174 KOG0295 WD40 repeat-containing 44.8 2.6E+02 0.0056 31.6 11.7 66 98-171 306-373 (406)
175 PF06977 SdiA-regulated: SdiA- 44.6 2E+02 0.0044 30.9 10.9 72 179-255 24-95 (248)
176 KOG1188 WD40 repeat protein [G 44.5 2.6E+02 0.0056 31.4 11.5 63 147-213 42-105 (376)
177 PF09910 DUF2139: Uncharacteri 44.4 1.6E+02 0.0034 32.5 9.8 110 52-166 116-234 (339)
178 PRK01742 tolB translocation pr 44.4 5.5E+02 0.012 29.6 21.3 66 51-118 213-284 (429)
179 cd00028 B_lectin Bulb-type man 43.7 1.9E+02 0.0041 26.8 9.5 22 151-173 62-83 (116)
180 KOG0271 Notchless-like WD40 re 43.4 5.5E+02 0.012 29.3 14.3 66 52-119 126-192 (480)
181 PF09910 DUF2139: Uncharacteri 43.2 5E+02 0.011 28.8 16.4 99 152-257 76-184 (339)
182 KOG1517 Guanine nucleotide bin 43.2 3.6E+02 0.0078 34.8 13.6 146 97-254 1178-1333(1387)
183 TIGR02800 propeller_TolB tol-p 42.8 5.4E+02 0.012 29.0 23.3 148 94-257 200-357 (417)
184 PRK04792 tolB translocation pr 41.2 6.3E+02 0.014 29.4 27.3 149 94-257 228-385 (448)
185 TIGR00548 lolB outer membrane 39.3 47 0.001 34.5 5.0 58 53-118 51-108 (202)
186 PF14783 BBS2_Mid: Ciliary BBS 39.2 3.3E+02 0.0072 25.6 11.6 69 53-128 15-83 (111)
187 COG2706 3-carboxymuconate cycl 37.8 6.4E+02 0.014 28.4 30.8 192 55-255 4-222 (346)
188 KOG0288 WD40 repeat protein Ti 37.8 3.1E+02 0.0066 31.5 11.1 107 101-219 316-426 (459)
189 PRK04922 tolB translocation pr 37.3 7E+02 0.015 28.7 22.6 148 94-257 214-371 (433)
190 KOG0280 Uncharacterized conser 36.8 68 0.0015 35.1 5.7 73 53-127 178-255 (339)
191 KOG1446 Histone H3 (Lys4) meth 35.6 6.5E+02 0.014 27.9 26.7 160 38-220 14-182 (311)
192 COG4946 Uncharacterized protei 35.6 8E+02 0.017 28.9 20.3 190 49-257 231-434 (668)
193 COG4946 Uncharacterized protei 34.8 8.2E+02 0.018 28.8 25.0 195 92-312 232-441 (668)
194 COG3386 Gluconolactonase [Carb 34.8 5.1E+02 0.011 28.7 12.5 75 51-127 172-255 (307)
195 KOG0647 mRNA export protein (c 34.4 6.8E+02 0.015 27.8 18.5 155 52-222 83-240 (347)
196 PF03178 CPSF_A: CPSF A subuni 34.3 6.5E+02 0.014 27.5 21.9 175 64-254 3-202 (321)
197 COG3419 PilY1 Tfp pilus assemb 34.2 2.9E+02 0.0063 35.4 11.2 67 97-170 583-649 (1036)
198 KOG0646 WD40 repeat protein [G 34.2 8.2E+02 0.018 28.6 17.2 137 53-198 93-239 (476)
199 PF15525 DUF4652: Domain of un 34.1 5.3E+02 0.012 26.6 11.1 66 496-573 87-153 (200)
200 PF04841 Vps16_N: Vps16, N-ter 33.9 7.9E+02 0.017 28.3 16.4 99 64-170 62-163 (410)
201 COG3292 Predicted periplasmic 33.9 1.9E+02 0.0041 34.6 9.0 70 53-129 175-244 (671)
202 KOG0643 Translation initiation 33.5 6.7E+02 0.015 27.4 18.6 187 52-255 21-221 (327)
203 KOG3914 WD repeat protein WDR4 33.1 94 0.002 35.2 6.2 75 51-126 161-235 (390)
204 KOG0285 Pleiotropic regulator 32.7 7.8E+02 0.017 27.9 21.9 170 28-216 132-313 (460)
205 KOG0265 U5 snRNP-specific prot 31.6 1.2E+02 0.0026 33.3 6.5 63 52-115 101-164 (338)
206 KOG0281 Beta-TrCP (transducin 30.1 6E+02 0.013 28.6 11.5 102 94-217 245-355 (499)
207 KOG0294 WD40 repeat-containing 29.5 8.3E+02 0.018 27.3 16.6 186 45-256 90-283 (362)
208 KOG1897 Damage-specific DNA bi 29.0 1.4E+03 0.03 29.6 23.6 69 141-211 264-338 (1096)
209 PRK02889 tolB translocation pr 27.2 1E+03 0.022 27.4 23.5 197 50-265 204-412 (427)
210 KOG0279 G protein beta subunit 27.1 8.7E+02 0.019 26.7 18.4 210 29-257 13-225 (315)
211 PF14339 DUF4394: Domain of un 27.0 3E+02 0.0066 29.3 8.5 89 26-117 9-106 (236)
212 PF02897 Peptidase_S9_N: Proly 26.8 9.7E+02 0.021 27.1 19.4 164 50-219 235-414 (414)
213 PF01453 B_lectin: D-mannose b 26.4 3.7E+02 0.0081 25.0 8.3 59 53-122 19-78 (114)
214 COG3419 PilY1 Tfp pilus assemb 25.7 9.3E+02 0.02 31.1 13.5 74 54-127 583-686 (1036)
215 PRK01742 tolB translocation pr 25.6 1.1E+03 0.023 27.2 22.2 144 94-257 214-364 (429)
216 KOG0274 Cdc4 and related F-box 25.5 1.2E+03 0.027 28.0 22.8 179 53-257 261-444 (537)
217 KOG0281 Beta-TrCP (transducin 25.5 2.6E+02 0.0057 31.3 7.9 92 103-212 337-430 (499)
218 KOG0771 Prolactin regulatory e 25.3 8E+02 0.017 28.2 11.8 26 229-254 285-311 (398)
219 KOG0263 Transcription initiati 25.2 2.6E+02 0.0056 34.4 8.4 71 54-125 548-618 (707)
220 PF14517 Tachylectin: Tachylec 24.5 2.2E+02 0.0048 30.2 7.0 68 98-173 134-206 (229)
221 KOG1188 WD40 repeat protein [G 24.1 1E+03 0.022 26.8 12.0 131 69-213 17-154 (376)
222 COG3017 LolB Outer membrane li 23.9 2E+02 0.0043 29.9 6.3 95 3-112 9-106 (206)
223 PF14781 BBS2_N: Ciliary BBSom 23.9 2.4E+02 0.0051 27.5 6.4 74 49-125 60-136 (136)
224 PF08596 Lgl_C: Lethal giant l 22.9 1E+03 0.022 27.5 12.6 182 53-265 97-300 (395)
225 PF08139 LPAM_1: Prokaryotic m 22.8 74 0.0016 21.7 2.0 16 3-18 10-25 (25)
226 KOG1912 WD40 repeat protein [G 22.2 9.9E+02 0.022 29.9 12.3 76 98-177 81-158 (1062)
227 KOG0639 Transducin-like enhanc 22.2 3.4E+02 0.0075 31.9 8.2 75 50-127 560-634 (705)
228 PF14583 Pectate_lyase22: Olig 21.7 1.3E+03 0.027 26.7 14.2 114 95-214 47-180 (386)
No 1
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.1e-125 Score=1062.44 Aligned_cols=751 Identities=35% Similarity=0.499 Sum_probs=596.9
Q ss_pred ccccccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEE
Q 003001 19 PSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYV 98 (859)
Q Consensus 19 ~~~Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~ 98 (859)
+|+|+|+||+|++|||++++| ++...|+.-.+..+++||+|++|+|++||.+||+++|||.++.+....+.. . +
T Consensus 14 ~~aav~edq~gkfdwr~~~vG-~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~--~---~ 87 (910)
T KOG2103|consen 14 RAAAVYEDQAGKFDWRQQLVG-VKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVP--L---T 87 (910)
T ss_pred HHHHHHHHHhhhcchhhhccc-ceeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcc--e---e
Confidence 445999999999999999999 444456666677899999999999999999999999999998874332221 1 1
Q ss_pred EEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCccee
Q 003001 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVE 178 (859)
Q Consensus 99 V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~ 178 (859)
-++|.+|..+|+||.++|.+.|+..+..+ . +...+.. ...+.++.+ .....|+..|.+.......+
T Consensus 88 ~~iS~dg~~lr~wn~~~g~l~~~i~l~~g-~-~~~~~~v-------~~~i~v~~g-----~~~~~g~l~w~~~~~~~~~~ 153 (910)
T KOG2103|consen 88 NTISVDGRYLRSWNTNNGILDWEIELADG-F-KGLLLEV-------NKGIAVLNG-----HTRKFGELKWVESFSISIEE 153 (910)
T ss_pred EEEccCCcEEEeecCCCceeeeecccccc-c-ceeEEEE-------ccceEEEcc-----eeccccceeehhhccccchh
Confidence 15788889999999999999999999876 3 1211111 122333333 66788999999988765554
Q ss_pred eeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCcee-eeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 179 VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL-NHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 179 ~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~-w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..|.+.+...+.+|++++--.++..|.+++..+|... |+.++..|+.-...|..+.+-+++|.+ |.+...++..++
T Consensus 154 ~~q~~~~~~t~vvy~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~~pw~~~~~c~~~k~~vl~~s~---g~l~s~di~~~~ 230 (910)
T KOG2103|consen 154 DLQDAKIYGTDVVYVLGLLKRSGSCVQQVFSDDGEVTGPQSTVLGPWFKVLSCSTDKEVVLVCSN---GTLISLDISSQK 230 (910)
T ss_pred HHHHhhhccCcEEEEEEEEecCCceEEEEEccCCcEecceeeeecCcccccccccccceEEEcCC---CCeEEEEEEeec
Confidence 5554445678899999987766778999999999999 888888886554456555556778875 478888887655
Q ss_pred eeEEEEeecCcCCCCCCceEEeecCCcc-ceEEEecCcEEEEEEecCCcEEEEEeecCcceeeeeeeecCCceEEEEEEE
Q 003001 258 IAFQETHLSNLGEDSSGMVEILPSSLTG-MFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEH 336 (859)
Q Consensus 258 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 336 (859)
. +...+ . .+++-. +.| ...+..+++..++.+++.|...++......-..+.+++..++..++.++.+
T Consensus 231 ~--~~~q~---~------~e~l~~-l~g~~i~~~g~~~~~~V~V~s~~~~~v~~~~~~e~~lsdsl~~~~d~e~~~si~~ 298 (910)
T KOG2103|consen 231 V--QISQL---L------AEILLP-LTGDLILLDGNKHTAMVSVNSSSNHWVYLFCRSEVDLSDSLEAGGDTEASKSIHP 298 (910)
T ss_pred c--chhhh---h------hhhhhc-cCCceEEecCCCceeEEEEecCCCeEEEeecccceeeccccccccccccceeeec
Confidence 1 11111 0 111110 112 334444557788999877777775543322233444555666666766655
Q ss_pred cCce----eEEEEeeeeeeecCccceeeeeccCCCceeEEEEEEEEecCCCceEEEEEEEcCCeEEEEECCeEE-EEeec
Q 003001 337 GGSK----VDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIV-WNRED 411 (859)
Q Consensus 337 ~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~l~~t~d~~~~l~~~g~~~-W~ReE 411 (859)
.++. |+..+....+... ....++...+.|+.+.. |..++++.+||++++++|+.+.++|||.+. |+|||
T Consensus 299 ~ss~~~~~V~~vn~l~~~~~~----~~~~~~~~l~~p~~F~~--~~~~~~e~~~~al~~~~d~~~~~~qng~i~~WsREE 372 (910)
T KOG2103|consen 299 ESSYLFDQVFIVNNLYLVLDA----QSILLEQKLSRPEVFGT--FEYFDREIGALALVVNDDHSLLFLQNGLILVWSREE 372 (910)
T ss_pred ccchhhheeeehhhhhhcchh----hhhhhhcccCcchhcce--eEEeccccceEEEEEecCceEEEEeCcceEEeehhh
Confidence 5433 2222222222222 23334444555544332 334455669999999999999999998877 99999
Q ss_pred ccccceeEEEEecCCCcccchHHhhhhhhh----hhHHHHHH-hhhcccccCChhhHHHHhh-------cc-cccccccc
Q 003001 412 ALASIIDVTTSELPVEKEGVSVAKVEHSLF----EWLKGHML-KLKGTLMLASPEDVAAIQA-------IR-LKSSEKSK 478 (859)
Q Consensus 412 sLa~i~~~~~vdlp~~~~~~~~~~le~e~~----~~~~~~~~-Rl~~~~~~~~~~~~~~l~~-------~~-~~~~~~~~ 478 (859)
+||++++++|+|||++++ ++.+|.||. +++++||+ |+.+ |+.+|++ .+ .+++.+++
T Consensus 373 sLa~vvd~~~vdlpLs~~---~~~~e~e~~~~~~~~l~~afl~R~~t--------q~~ql~~~~~h~~~~~~~~s~~~n~ 441 (910)
T KOG2103|consen 373 SLANVVDVEMVDLPLSRD---QGLLEDEFEDKESNSLWGAFLKRLTT--------QFNQLINLLKHNQGLPTPLSALKNK 441 (910)
T ss_pred hhhhhccceeeccccccc---hhhHHHHhhccccchHHHHHHHHHHH--------HHHHHHHHHHhhhccCCCccccccc
Confidence 999999999999999998 667777763 37999999 9999 8877765 22 44555666
Q ss_pred -ccccCCCceEEEEEEeCCceEEEEECCCCcEEEEEecccCCCCCCCceee-EEeeecCcccCCCCCCeEEEEEEeCCCC
Q 003001 479 -MTRDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELN-LYQWQTPHHHAMDENPSVLVVGRCGVSS 556 (859)
Q Consensus 479 -~~rD~fGf~Klivv~T~~Gkl~alds~~G~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vv~~~~~~~ 556 (859)
+.||.||||||||++|++|||||||+.+|+++|++.+++... ++++++ ++|+..+||+ .++.|.|+++++ -
T Consensus 442 ~l~rD~Fgl~K~iIvlT~tGkiFglds~~G~i~Wkl~L~~~~~--~~e~v~l~vqr~~~H~~---~d~~~svlf~~k--~ 514 (910)
T KOG2103|consen 442 DLSRDKFGLRKMIIVLTSTGKIFGLDSVDGQIHWKLWLPNVQQ--NPEGVKLFVQRTTAHFP---LDEDPSVLFVHK--G 514 (910)
T ss_pred ceeecccCceeEEEEEecCceEEEEEcCCCeEEEEEecCcccC--CcccceEEEEeccccCC---CCCCCeEEEEec--c
Confidence 999999999999999999999999999999999999997432 356899 6888888887 677777777775 4
Q ss_pred CCCcEEEEEEccCCceeccccccccceEEEeecccCCccceEEEEEcCCCceEEccCChhhhhhhhccccceEEEEEEcC
Q 003001 557 KAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEAD 636 (859)
Q Consensus 557 ~~~~~~~~~d~~tG~~~~~~~l~~~~~~~~~lp~~~~~~~~~~l~~d~~~~v~~~p~~~~~~~~~~~~~~~~~f~~~~~~ 636 (859)
++++.++.|||++|++.+..+++++++|.++||.++.++++.++++|+.+.+++||.+.+.+..++++++++|+|++|.+
T Consensus 515 s~~gvly~fn~~~Gkv~s~~~l~~~v~q~sllp~~~~d~~~~illidd~~~v~l~P~~~~~l~~~~~~a~s~y~Yt~e~~ 594 (910)
T KOG2103|consen 515 SGNGVLYEFNPITGKVISRSPLDYRVKQLSLLPVTEHDHQYLILLIDDHLKVKLYPGTSTDLEIVANEASSIYLYTVEAD 594 (910)
T ss_pred CCCeEEEEEecCcceeeecCccCCceeeEEeccccccccceeEEEecccceEEecCCCcccchhhhhccCccEEEEEEcc
Confidence 78999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeecCCCcccccccceeeEeEEEEcCCCCceEEEEeecCCCCccccceEecCCCceeeeccCCceEEEEEEc
Q 003001 637 NGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVA 716 (859)
Q Consensus 637 ~~~i~G~~~~~~~~~~~~~~~~~~~~~tW~~~~~~~~e~Iv~~~~r~~~e~v~S~g~VLgDRsVLYKYLNPNl~~v~t~~ 716 (859)
+|.|+||.+..+ ++..++|+.++|++.|+||++..|+++|+|||+|||||||+||||||||||+||+|.+
T Consensus 595 ~~~i~Gy~i~~~----------lT~~~~W~~~l~~e~e~IIav~~r~p~e~VhSqGrVlgdrsVlYKYlnPNL~A~~t~~ 664 (910)
T KOG2103|consen 595 TGGIYGYIIKAD----------LTTTQTWKKNLPSEKEKIIAVKGRNPNEHVHSQGRVLGDRSVLYKYLNPNLAAVATAN 664 (910)
T ss_pred cCcEEEEEEecc----------cceeeeeeeccCchhheeeEeccCCcchheeecceecccceeeeeccCcchhheeecC
Confidence 999999999744 5788999999997779999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCCcEEEEEEEEceeeeEEEEEeecCCCCCeeEEEeccEEEEEEeeccceeeEEEEEEeccCCccCchh
Q 003001 717 PKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKD 796 (859)
Q Consensus 717 ~~~~~~~~~~~~~~~~l~vyliD~VTG~il~s~~h~~~~~pv~~v~~ENWvvYsy~~~~~~~~~i~vvELye~~~~~~~~ 796 (859)
+++ ++ .-++||||+|||+|+|+++|+++++|||+||||||+||||||++.+|+||+|+||||++++++|
T Consensus 665 ~~~-------~~---~~~~~LiD~VTG~Ivht~~h~k~~~PvhiVfSENWvvYsYfs~k~~rteltvvELYEgs~~~nk- 733 (910)
T KOG2103|consen 665 PDD-------HH---ETFLYLIDTVTGSIVHTQSHQKARGPVHIVFSENWVVYSYFSDKARRTELTVVELYEGSEQDNK- 733 (910)
T ss_pred cCC-------ce---eEEEEEEeeeeeEEEEeeehhhhcCceEEEEecceEEEEEeccccccceEEEEEEecCCccccc-
Confidence 983 21 2256999999999999999999999999999999999999999999999999999999987764
Q ss_pred hheeccccccCcccccCCCCC-ce-eEEEEEeecccccceEEeecccCCcccccEEEEecCCccC
Q 003001 797 VLKLVLGKHNLTAPVSSYSRP-EI-TTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVS 859 (859)
Q Consensus 797 ~~~~~~~~~~~t~~~Ss~~~~-~~-~v~~qsyi~p~~I~~l~vT~T~~GITsK~iL~~~~~gQi~ 859 (859)
. +.. |+|+..| .| ++.+||||||+.|++|++|.|++|||+|+||+||++|||.
T Consensus 734 -------~--s~~-~~sl~ap~lp~~v~tqsYIfp~~I~tm~vT~Te~GITsk~iLigl~sgqI~ 788 (910)
T KOG2103|consen 734 -------L--SNV-FDSLSAPPLPGQVQTQSYIFPQIIKTMSVTITEQGITSKHILIGLPSGQIL 788 (910)
T ss_pred -------c--ccc-hhcccCCCCCchhheeeeechhheeeeeeeecccCcchhheEEecCCCCcc
Confidence 1 334 8888865 46 9999999999999999999999999999999999999984
No 2
>PF07774 DUF1620: Protein of unknown function (DUF1620); InterPro: IPR011678 These sequences are mainly derived from predicted eukaryotic proteins. The region in question lies towards the C terminus of these large proteins and is approximately 300 amino acid residues long.
Probab=99.88 E-value=2.1e-23 Score=215.21 Aligned_cols=89 Identities=42% Similarity=0.742 Sum_probs=78.8
Q ss_pred EeccEEEEEEeeccceeeEEEEEEeccCCccCchhhheeccccccCcccccCC----CCCceeEEEEEeecccccceEEe
Q 003001 762 LSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSY----SRPEITTKSQTYFFTHSVKAVAV 837 (859)
Q Consensus 762 ~~ENWvvYsy~~~~~~~~~i~vvELye~~~~~~~~~~~~~~~~~~~t~~~Ss~----~~~~~~v~~qsyi~p~~I~~l~v 837 (859)
|+|||+||||||.+.+||||+|+||||+.+++++... ... +||+ +.++|.+++|+|+||++|++|++
T Consensus 1 ~~ENwivysy~~~~~~~~~i~vvELye~~~~~~~~~~--------~~~-~ss~~~~~~~~~p~v~~qsyi~p~~I~~l~v 71 (217)
T PF07774_consen 1 FSENWIVYSYFNSKSRRQEIVVVELYESKEPNNRTSF--------ISS-FSSFNSSASSPPPIVLSQSYIFPEPIKALGV 71 (217)
T ss_pred CcccEEEEEEEcCCCceEEEEEEEeecCCCcCCCccc--------ccc-ccccccccCCCCcEEEEEEEccCCccceEEe
Confidence 6899999999999999999999999999988776322 122 5665 56788999999999999999999
Q ss_pred ecccCCcccccEEEEecCCccC
Q 003001 838 TSTAKGITSKQLLIGTIGDQVS 859 (859)
Q Consensus 838 T~T~~GITsK~iL~~~~~gQi~ 859 (859)
|+|++|||+|+||++|++|||+
T Consensus 72 T~T~~GIT~K~iL~~~~~gqi~ 93 (217)
T PF07774_consen 72 TRTKQGITSKSILIGLESGQIV 93 (217)
T ss_pred eeccccchhhhhheEcCCCCEE
Confidence 9999999999999999999984
No 3
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.87 E-value=1.5e-19 Score=205.76 Aligned_cols=214 Identities=20% Similarity=0.332 Sum_probs=148.3
Q ss_pred cccEeEEEeccCceeeeee--eeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcc---------eeeeeeeecC
Q 003001 28 VGLMDWHQQYIGKVKHAVF--HTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDV---------VDGIDIALGK 96 (859)
Q Consensus 28 ~G~~dW~~~~vG~~~~~~f--~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~---------i~~l~~~~~~ 96 (859)
.++..|+..+ |......+ ..|...+++||+++.+|.|+|||++||+++|++.+..... +.+. +...+
T Consensus 43 ~~~~~W~~~~-g~g~~~~~~~~sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 120 (394)
T PRK11138 43 TPTTVWSTSV-GDGVGDYYSRLHPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG-VTVAG 120 (394)
T ss_pred CcceeeEEEc-CCCCccceeeeccEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccc-cEEEC
Confidence 5778999886 44321111 2466679999999999999999999999999999875211 1111 23456
Q ss_pred EEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCc
Q 003001 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE 175 (859)
Q Consensus 97 ~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~ 175 (859)
+.|++++.++.|+|+|++||+++|+.++..+.. +.+++ . ++.+++. .+|.|+|||.+||+++|+++...+
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~--ssP~v------~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEAL--SRPVV------S-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCcee--cCCEE------E-CCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 677777766799999999999999999876543 11222 2 5777775 589999999999999999987543
Q ss_pred ceeee-eEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccC---------ccCceEEecCcEEEEEECCC
Q 003001 176 SVEVQ-QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG---------FVGDVALVSSDTLVTLDTTR 245 (859)
Q Consensus 176 ~~~~~-~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~---------~s~~~~~v~~~~lv~~d~~~ 245 (859)
..... ...+...++.+|+.+..| .++|+|+.+|+.+|+.++..+.+ +...+++.+ +.+++.+. .
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~g----~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~-~ 265 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDNG----RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAY-N 265 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCCC----EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEc-C
Confidence 22110 011123567788755444 59999999999999987655432 112333434 44444543 5
Q ss_pred CeEEEEEeecCee
Q 003001 246 SILVTVSFKNRKI 258 (859)
Q Consensus 246 ~~l~v~~L~sg~~ 258 (859)
|.++++++.+|+.
T Consensus 266 g~l~ald~~tG~~ 278 (394)
T PRK11138 266 GNLVALDLRSGQI 278 (394)
T ss_pred CeEEEEECCCCCE
Confidence 7899999999874
No 4
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.82 E-value=2.7e-17 Score=186.08 Aligned_cols=234 Identities=18% Similarity=0.319 Sum_probs=159.0
Q ss_pred HHHHHHHHhhccCc-----------cccccccccccEeEEEeccCceeeee-e-eeeccCCCEEEEEeCCCEEEEEECCC
Q 003001 6 IILTLLFLSSCTIP-----------SLSLYEDQVGLMDWHQQYIGKVKHAV-F-HTQKTGRKRVVVSTEENVIASLDLRH 72 (859)
Q Consensus 6 ~l~~l~~l~~~~~~-----------~~Al~edq~G~~dW~~~~vG~~~~~~-f-~~~~~~~~~Vyvat~~g~l~ALd~~t 72 (859)
+++.+.+|.+|+.- ...+..++.|+..|+.++ |...... . ..|...+++||+++.+|.|+|+|++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~~~~~~~~~~~p~v~~~~v~v~~~~g~v~a~d~~t 84 (377)
T TIGR03300 6 VIALAALLSGCSWFSSKDEEPQPAELPEFQPTVKVDQVWSASV-GDGVGHYYLRLQPAVAGGKVYAADADGTVVALDAET 84 (377)
T ss_pred HHHHHHHHhcccCCCCCCCcCCCCCcccccccCcceeeeEEEc-CCCcCccccccceEEECCEEEEECCCCeEEEEEccC
Confidence 34444567777641 123345678999999986 5432111 1 24666799999999999999999999
Q ss_pred CccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-
Q 003001 73 GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS- 151 (859)
Q Consensus 73 G~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~- 151 (859)
|+++|++.++.. +.+. +..+++.+++++.++.|+|||+.+|+++|+.....+.. ..+. .. ++.+++.
T Consensus 85 G~~~W~~~~~~~--~~~~-p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~p~------v~-~~~v~v~~ 152 (377)
T TIGR03300 85 GKRLWRVDLDER--LSGG-VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL--SPPL------VA-NGLVVVRT 152 (377)
T ss_pred CcEeeeecCCCC--cccc-eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee--cCCE------EE-CCEEEEEC
Confidence 999999999775 3222 34566777777767799999999999999998876543 1111 22 5667775
Q ss_pred eCCEEEEEEcCCCcEEEEEeccCcceeeee-EEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccC-----
Q 003001 152 SKGCLHAVSSIDGEILWTRDFAAESVEVQQ-VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG----- 225 (859)
Q Consensus 152 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~----- 225 (859)
.+|.|+++|.++|+.+|+++...+...... ..+...++.+|+ +..++ +++++|+++|+.+|+.....+.+
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~g---~v~ald~~tG~~~W~~~~~~~~g~~~~~ 228 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAGG---KLVALDLQTGQPLWEQRVALPKGRTELE 228 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCCC---EEEEEEccCCCEeeeeccccCCCCCchh
Confidence 589999999999999999987654321110 111124566665 43332 69999999999999987654422
Q ss_pred ----ccCceEEecCcEEEEEECCCCeEEEEEeecCee
Q 003001 226 ----FVGDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (859)
Q Consensus 226 ----~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~~ 258 (859)
....+. +.++.+++.+. .|.++++++.+|+.
T Consensus 229 ~~~~~~~~p~-~~~~~vy~~~~-~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 229 RLVDVDGDPV-VDGGQVYAVSY-QGRVAALDLRSGRV 263 (377)
T ss_pred hhhccCCccE-EECCEEEEEEc-CCEEEEEECCCCcE
Confidence 112233 34455545543 57899999988873
No 5
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.77 E-value=1.9e-16 Score=180.39 Aligned_cols=216 Identities=15% Similarity=0.254 Sum_probs=145.9
Q ss_pred cccccEeEEEeccCceee------ee-eeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEE
Q 003001 26 DQVGLMDWHQQYIGKVKH------AV-FHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYV 98 (859)
Q Consensus 26 dq~G~~dW~~~~vG~~~~------~~-f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~ 98 (859)
.+.|+..|++++-+.... .. ...|...+++||+++.+|.|+|||++||+++|+..++.. +... +...++.
T Consensus 86 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~~ss-P~v~~~~ 162 (394)
T PRK11138 86 ADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE--ALSR-PVVSDGL 162 (394)
T ss_pred CCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCc--eecC-CEEECCE
Confidence 357999999987542110 01 112556689999999999999999999999999998654 2222 2345566
Q ss_pred EEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcc-
Q 003001 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAES- 176 (859)
Q Consensus 99 V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~- 176 (859)
+++...++.|+|+|++||+++|+.....+.+.......| .+. ++.+++. .+|.++|+|.++|+++|+.+...+.
T Consensus 163 v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP---~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 163 VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP---ATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC---EEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 776666679999999999999999876443210000111 222 4566664 6999999999999999998764321
Q ss_pred -eeeee-----EEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEE
Q 003001 177 -VEVQQ-----VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVT 250 (859)
Q Consensus 177 -~~~~~-----~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v 250 (859)
....+ ..+...++.+|+.+..| .++|+|+.+|+.+|+.....+. .+. +.++.+++.+ ..|.+++
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~~~~~~~----~~~-~~~~~vy~~~-~~g~l~a 308 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVYALAYNG----NLVALDLRSGQIVWKREYGSVN----DFA-VDGGRIYLVD-QNDRVYA 308 (394)
T ss_pred ccchhcccccCCCcEEECCEEEEEEcCC----eEEEEECCCCCEEEeecCCCcc----CcE-EECCEEEEEc-CCCeEEE
Confidence 10000 11124688999877665 5999999999999998654321 222 3344444444 3578999
Q ss_pred EEeecCee
Q 003001 251 VSFKNRKI 258 (859)
Q Consensus 251 ~~L~sg~~ 258 (859)
++..+|++
T Consensus 309 ld~~tG~~ 316 (394)
T PRK11138 309 LDTRGGVE 316 (394)
T ss_pred EECCCCcE
Confidence 99888873
No 6
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.74 E-value=1e-15 Score=161.05 Aligned_cols=217 Identities=19% Similarity=0.298 Sum_probs=146.2
Q ss_pred ccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE
Q 003001 23 LYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS 102 (859)
Q Consensus 23 l~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs 102 (859)
.++.+.|+..|+.++ +.........+...++.+|+++.++.|+|+|++||+++|++.++.+ +...+...++.+++.+
T Consensus 7 ~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~v~v~~ 83 (238)
T PF13360_consen 7 ALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAPVVDGGRVYVGT 83 (238)
T ss_dssp EEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGEEEETTEEEEEE
T ss_pred EEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccceeeeccccccccc
Confidence 455679999999987 4322111212333689999999999999999999999999999655 2222233455555545
Q ss_pred cCCCeEEEEeCCCCcEeEEE-eccCccccCCcccccccccccCCCeEEEEe-CCEEEEEEcCCCcEEEEEeccCcce-e-
Q 003001 103 SDGSTLRAWNLPDGQMVWES-FLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESV-E- 178 (859)
Q Consensus 103 ~~g~~v~Ald~~tG~llW~~-~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-~g~l~ald~~tG~~~W~~~~~~~~~-~- 178 (859)
. ++.++++|+.||+++|+. ....+.. . .......... ++.+++.. +|.|+++|+++|+++|+++...+.. .
T Consensus 84 ~-~~~l~~~d~~tG~~~W~~~~~~~~~~-~--~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 84 S-DGSLYALDAKTGKVLWSIYLTSSPPA-G--VRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp T-TSEEEEEETTTSCEEEEEEE-SSCTC-S--TB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred c-eeeeEecccCCcceeeeecccccccc-c--cccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 4 459999999999999995 4443322 0 0001001222 45666654 9999999999999999998854331 1
Q ss_pred -------eeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEE
Q 003001 179 -------VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTV 251 (859)
Q Consensus 179 -------~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~ 251 (859)
..++ ...++.+|+.+..|. +.++|..+|+.+|+..... .. ..+...++.+++.+ ..+.++++
T Consensus 159 ~~~~~~~~~~~--~~~~~~v~~~~~~g~----~~~~d~~tg~~~w~~~~~~---~~-~~~~~~~~~l~~~~-~~~~l~~~ 227 (238)
T PF13360_consen 159 ISSFSDINGSP--VISDGRVYVSSGDGR----VVAVDLATGEKLWSKPISG---IY-SLPSVDGGTLYVTS-SDGRLYAL 227 (238)
T ss_dssp EEEETTEEEEE--ECCTTEEEEECCTSS----EEEEETTTTEEEEEECSS----EC-ECEECCCTEEEEEE-TTTEEEEE
T ss_pred eeeecccccce--EEECCEEEEEcCCCe----EEEEECCCCCEEEEecCCC---cc-CCceeeCCEEEEEe-CCCEEEEE
Confidence 1122 235678888766663 7888999999999664222 11 22344667777777 56899999
Q ss_pred EeecCee
Q 003001 252 SFKNRKI 258 (859)
Q Consensus 252 ~L~sg~~ 258 (859)
++.+|++
T Consensus 228 d~~tG~~ 234 (238)
T PF13360_consen 228 DLKTGKV 234 (238)
T ss_dssp ETTTTEE
T ss_pred ECCCCCE
Confidence 9999984
No 7
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.69 E-value=1.3e-14 Score=164.22 Aligned_cols=214 Identities=20% Similarity=0.281 Sum_probs=145.4
Q ss_pred cccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc
Q 003001 24 YEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS 103 (859)
Q Consensus 24 ~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~ 103 (859)
++...|+..|++++-+... ..|..+++++|+++.+|.|+|||++||+++|+..++.. +... +...++.+++..
T Consensus 80 ~d~~tG~~~W~~~~~~~~~----~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~-p~v~~~~v~v~~ 152 (377)
T TIGR03300 80 LDAETGKRLWRVDLDERLS----GGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE--VLSP-PLVANGLVVVRT 152 (377)
T ss_pred EEccCCcEeeeecCCCCcc----cceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce--eecC-CEEECCEEEEEC
Confidence 3457899999998755432 24666789999999999999999999999999988654 2222 234455666666
Q ss_pred CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcc--eeee
Q 003001 104 DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAES--VEVQ 180 (859)
Q Consensus 104 ~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~--~~~~ 180 (859)
.++.|++||+.+|+++|+.....+......... +...++.+++. .+|.++++|..+|+.+|+.+...+. ....
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s----p~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~ 228 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSAS----PVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELE 228 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCC----CEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchh
Confidence 567999999999999999987655321000011 12224555554 5799999999999999998754221 0000
Q ss_pred e-----EEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeec
Q 003001 181 Q-----VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 181 ~-----~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~s 255 (859)
+ ..+...++.+|+.+..| .++++|+++|+.+|+...... ..+. +.++.+++.+ ..|.++.++..+
T Consensus 229 ~~~~~~~~p~~~~~~vy~~~~~g----~l~a~d~~tG~~~W~~~~~~~----~~p~-~~~~~vyv~~-~~G~l~~~d~~t 298 (377)
T TIGR03300 229 RLVDVDGDPVVDGGQVYAVSYQG----RVAALDLRSGRVLWKRDASSY----QGPA-VDDNRLYVTD-ADGVVVALDRRS 298 (377)
T ss_pred hhhccCCccEEECCEEEEEEcCC----EEEEEECCCCcEEEeeccCCc----cCce-EeCCEEEEEC-CCCeEEEEECCC
Confidence 0 01123678899877665 599999999999999863221 1222 3344444444 357899998888
Q ss_pred Cee
Q 003001 256 RKI 258 (859)
Q Consensus 256 g~~ 258 (859)
|+.
T Consensus 299 G~~ 301 (377)
T TIGR03300 299 GSE 301 (377)
T ss_pred CcE
Confidence 873
No 8
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.63 E-value=3.8e-14 Score=165.76 Aligned_cols=231 Identities=10% Similarity=0.137 Sum_probs=143.8
Q ss_pred ccccccEeEEEeccCce--eeeeeeeeccCCCEEEEEeC---------CCEEEEEECCCCccceEEEcCCCcc-------
Q 003001 25 EDQVGLMDWHQQYIGKV--KHAVFHTQKTGRKRVVVSTE---------ENVIASLDLRHGEIFWRHVLGINDV------- 86 (859)
Q Consensus 25 edq~G~~dW~~~~vG~~--~~~~f~~~~~~~~~Vyvat~---------~g~l~ALd~~tG~ilWR~~l~~~~~------- 86 (859)
+.+.|+..|++++-+.. ....-..|...++.+|+++. .|.|+|||++||+++|++.+..+..
T Consensus 126 D~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 126 DAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred ECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCC
Confidence 56789999999875442 11111235556788999864 5889999999999999998853210
Q ss_pred ------------eeeeeeee--cCEEEEEEcCCC------------------eEEEEeCCCCcEeEEEeccCccc---c-
Q 003001 87 ------------VDGIDIAL--GKYVITLSSDGS------------------TLRAWNLPDGQMVWESFLRGSKH---S- 130 (859)
Q Consensus 87 ------------i~~l~~~~--~~~~V~Vs~~g~------------------~v~Ald~~tG~llW~~~~~~~~l---s- 130 (859)
+-.. +.. .+++|++++.++ .|+|+|++||+++|+++...... .
T Consensus 206 ~~~~~~~~~g~~vw~~-pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 206 PDRQMWGPGGGTSWAS-PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDG 284 (488)
T ss_pred CCcceecCCCCCccCC-eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccccc
Confidence 0011 122 357788765332 79999999999999998754321 0
Q ss_pred CCcccccccccccCCC--eEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEec----------
Q 003001 131 KPLLLVPTNLKVDKDS--LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYA---------- 197 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~--~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~---------- 197 (859)
...+.+......++.. .|++. .+|.|+|||++||+++|+.+...... +..++.||+.+..
T Consensus 285 ~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~-------~~~~~~vyv~~~~~~~~~~~~~~ 357 (488)
T cd00216 285 PNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPM-------AYDPGLVYLGAFHIPLGLPPQKK 357 (488)
T ss_pred CCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecccc-------ccCCceEEEccccccccCccccc
Confidence 0111111000011111 24443 48999999999999999987642111 1244777764321
Q ss_pred ----CCceeEEEEEEcCCCceeeeeeeecc-------cCccCceEEecCcEEEEEECCCCeEEEEEeecCeeeEEEEee
Q 003001 198 ----GSSQFHAYQINAMNGELLNHETAAFS-------GGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (859)
Q Consensus 198 ----g~~~~~v~ald~~tG~~~w~~~v~~~-------~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~l 265 (859)
......++|||+.||+.+|+...... .......+.+.++.+++.+ ..|.+++++..+|++ .-+..+
T Consensus 358 ~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~-~dG~l~ald~~tG~~-lW~~~~ 434 (488)
T cd00216 358 KRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA-ADGYFRAFDATTGKE-LWKFRT 434 (488)
T ss_pred CCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC-CCCeEEEEECCCCce-eeEEEC
Confidence 11235799999999999999986511 0111223334556666666 458999999999984 333444
No 9
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.63 E-value=2.3e-14 Score=167.70 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=141.0
Q ss_pred ccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc-----ceeeeeeeecC-EEEE
Q 003001 27 QVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGK-YVIT 100 (859)
Q Consensus 27 q~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-----~i~~l~~~~~~-~~V~ 100 (859)
+.+++.|+.+. |.. ......|...+++||+++.+|.|+|||++||+++|+..+.... .+..-.+...+ +.|+
T Consensus 37 ~~~~~~W~~~~-~~~-~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~ 114 (488)
T cd00216 37 KKLKVAWTFST-GDE-RGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVF 114 (488)
T ss_pred hcceeeEEEEC-CCC-CCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEE
Confidence 45789999987 420 0112246667999999999999999999999999999886541 00000012334 6777
Q ss_pred EEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe----------CCEEEEEEcCCCcEEEEE
Q 003001 101 LSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS----------KGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 101 Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~----------~g~l~ald~~tG~~~W~~ 170 (859)
+++.++.|+|+|++||+++|++....+.. ....+.. +..+. ++.+++.. +|.|+|||++||+++|++
T Consensus 115 v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-~~~~i~s-sP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 115 FGTFDGRLVALDAETGKQVWKFGNNDQVP-PGYTMTG-APTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred EecCCCeEEEEECCCCCEeeeecCCCCcC-cceEecC-CCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 77767799999999999999999876520 0000000 00222 46666642 578999999999999999
Q ss_pred eccCcc-eee------------------eeEEEeecCCeEEEEEecCC--------------ceeEEEEEEcCCCceeee
Q 003001 171 DFAAES-VEV------------------QQVIQLDESDQIYVVGYAGS--------------SQFHAYQINAMNGELLNH 217 (859)
Q Consensus 171 ~~~~~~-~~~------------------~~~v~~~~~~~vyvv~~~g~--------------~~~~v~ald~~tG~~~w~ 217 (859)
+...+. ... ...+.....+.||+.+.++. ....++|||++||+++|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~ 271 (488)
T cd00216 192 YTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF 271 (488)
T ss_pred eccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE
Confidence 774221 000 01110114577887543320 123699999999999999
Q ss_pred eeeeccc----CccCceEEe-----cCc---EEEEEECCCCeEEEEEeecCe
Q 003001 218 ETAAFSG----GFVGDVALV-----SSD---TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 218 ~~v~~~~----~~s~~~~~v-----~~~---~lv~~d~~~~~l~v~~L~sg~ 257 (859)
++...+. .....+.+. .+. ++++.. .+|.++++++.+|+
T Consensus 272 ~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~ 322 (488)
T cd00216 272 YQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGK 322 (488)
T ss_pred eeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCc
Confidence 9764331 111112221 111 333443 46788899988887
No 10
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.58 E-value=2.3e-13 Score=143.10 Aligned_cols=180 Identities=21% Similarity=0.315 Sum_probs=117.5
Q ss_pred CCCEEEEEECCCCccceEEEcCCCcceeeee--eeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccc
Q 003001 61 EENVIASLDLRHGEIFWRHVLGINDVVDGID--IALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPT 138 (859)
Q Consensus 61 ~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~--~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~ 138 (859)
++|.|.|+|++||+++|+..++.. ..+.. +...++.+++++.++.|++||+.||+++|+..+..+.. ..+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~--~~~---- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPG--IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS--GAP---- 72 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSS--CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG--SGE----
T ss_pred CCCEEEEEECCCCCEEEEEECCCC--CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc--cee----
Confidence 478999999999999999999543 11111 23355566666556799999999999999999965543 111
Q ss_pred cccccCCCeEEEE-eCCEEEEEEcCCCcEEEEE-eccCccee-eeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCcee
Q 003001 139 NLKVDKDSLILVS-SKGCLHAVSSIDGEILWTR-DFAAESVE-VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (859)
Q Consensus 139 ~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~-~~~~~~~~-~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~ 215 (859)
... ++.+++. .++.++++|..+|+++|+. ....+... .........++.+|+....| .++++|++||+++
T Consensus 73 --~~~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 73 --VVD-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG----KLVALDPKTGKLL 145 (238)
T ss_dssp --EEE-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS----EEEEEETTTTEEE
T ss_pred --eec-ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC----cEEEEecCCCcEE
Confidence 122 6777776 4889999999999999994 44322211 11111123577777654444 5999999999999
Q ss_pred eeeeeecccCcc---------CceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 216 NHETAAFSGGFV---------GDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 216 w~~~v~~~~~~s---------~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+..+..+.... +.+++ .++.+...+ ..+.+..+++.+|+
T Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 146 WKYPVGEPRGSSPISSFSDINGSPVI-SDGRVYVSS-GDGRVVAVDLATGE 194 (238)
T ss_dssp EEEESSTT-SS--EEEETTEEEEEEC-CTTEEEEEC-CTSSEEEEETTTTE
T ss_pred EEeecCCCCCCcceeeecccccceEE-ECCEEEEEc-CCCeEEEEECCCCC
Confidence 999885544221 23333 334443443 33445555888887
No 11
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.51 E-value=1.3e-12 Score=153.78 Aligned_cols=222 Identities=16% Similarity=0.172 Sum_probs=138.8
Q ss_pred ccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceee--------eeeeecCEEEE
Q 003001 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDG--------IDIALGKYVIT 100 (859)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~--------l~~~~~~~~V~ 100 (859)
.+..|+.++ |... .....|...+++||+++..|.|+|||++||+++|++....+..+.. -.+...++.|+
T Consensus 47 L~~~W~~~~-g~~~-g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~ 124 (527)
T TIGR03075 47 LQPAWTFSL-GKLR-GQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVF 124 (527)
T ss_pred ceEEEEEEC-CCCC-CcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEE
Confidence 457899887 4321 1123466678999999999999999999999999998754321110 00134455677
Q ss_pred EEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe-------CCEEEEEEcCCCcEEEEEecc
Q 003001 101 LSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 101 Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~tG~~~W~~~~~ 173 (859)
+++.++.|+|+|+.||+++|+........ ...... ++...++.|++.. +|.|+|||++||+++|++...
T Consensus 125 v~t~dg~l~ALDa~TGk~~W~~~~~~~~~--~~~~ts--sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 125 FGTLDARLVALDAKTGKVVWSKKNGDYKA--GYTITA--APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred EEcCCCEEEEEECCCCCEEeecccccccc--cccccC--CcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 77666799999999999999988743211 001111 1222256777742 589999999999999998664
Q ss_pred Ccce------------ee----------ee--------EEEeecCCeEEEEEec-----CC-------ceeEEEEEEcCC
Q 003001 174 AESV------------EV----------QQ--------VIQLDESDQIYVVGYA-----GS-------SQFHAYQINAMN 211 (859)
Q Consensus 174 ~~~~------------~~----------~~--------~v~~~~~~~vyvv~~~-----g~-------~~~~v~ald~~t 211 (859)
.+.- ++ .+ +..-...+.||+..-. +. +.-.++|||++|
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 2110 00 00 0100135677764422 21 123699999999
Q ss_pred Cceeeeeeeecc--c--CccCceEEe----cCc---EEEEEECCCCeEEEEEeecCe
Q 003001 212 GELLNHETAAFS--G--GFVGDVALV----SSD---TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 212 G~~~w~~~v~~~--~--~~s~~~~~v----~~~---~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+..|.++..-. + +.....+++ ++. .++..+ .+|.++++|-.+|+
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHAD-RNGFFYVLDRTNGK 336 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeC-CCceEEEEECCCCc
Confidence 999999985322 2 222233333 222 444444 56888888888887
No 12
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.49 E-value=2.1e-12 Score=156.20 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=129.4
Q ss_pred eccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcce-------eeee----------------eeecCEEEEEEcCC
Q 003001 49 QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV-------DGID----------------IALGKYVITLSSDG 105 (859)
Q Consensus 49 ~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i-------~~l~----------------~~~~~~~V~Vs~~g 105 (859)
|...+++||+.|..|.|+|||++||+++||+..+.+... .++. +...++.|++++.+
T Consensus 190 Plvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D 269 (764)
T TIGR03074 190 PLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD 269 (764)
T ss_pred CEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC
Confidence 555689999999999999999999999999988654211 0110 11234467777767
Q ss_pred CeEEEEeCCCCcEeEEEeccCcc-cc------CCcccccccccccCCCeEEEEe-----------CCEEEEEEcCCCcEE
Q 003001 106 STLRAWNLPDGQMVWESFLRGSK-HS------KPLLLVPTNLKVDKDSLILVSS-----------KGCLHAVSSIDGEIL 167 (859)
Q Consensus 106 ~~v~Ald~~tG~llW~~~~~~~~-ls------~~~~~~~~~~~~~~~~~VvV~~-----------~g~l~ald~~tG~~~ 167 (859)
++|+|+|+.||+++|++...+.. +. ........+.+...++.|++.. +|.|+|+|++||+++
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 89999999999999997654322 00 0000001111233356777742 588999999999999
Q ss_pred EEEeccCccee--------ee--------eEEEeecCCeEEEEEe------cC--------CceeEEEEEEcCCCceeee
Q 003001 168 WTRDFAAESVE--------VQ--------QVIQLDESDQIYVVGY------AG--------SSQFHAYQINAMNGELLNH 217 (859)
Q Consensus 168 W~~~~~~~~~~--------~~--------~~v~~~~~~~vyvv~~------~g--------~~~~~v~ald~~tG~~~w~ 217 (859)
|++....+... .. ....-...+.+|+-.- .| .+.-.++|||++||+..|.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 99986422110 00 0000113355665221 01 1235699999999999999
Q ss_pred eeeecc----cCccCceEEec----Cc----EEEEEECCCCeEEEEEeecCe
Q 003001 218 ETAAFS----GGFVGDVALVS----SD----TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 218 ~~v~~~----~~~s~~~~~v~----~~----~lv~~d~~~~~l~v~~L~sg~ 257 (859)
++..-. .++.....+++ ++ .++..+ .+|.++++|-++|+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGE 480 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCC
Confidence 975221 12222333331 23 455555 46889999999887
No 13
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.49 E-value=2.5e-12 Score=145.42 Aligned_cols=217 Identities=21% Similarity=0.244 Sum_probs=147.2
Q ss_pred cccccEeEEEeccCceeeeeeeee--ccCCCEEEEEeCCCEEEEEECCCCccceEEEcCC-CcceeeeeeeecCEEEEEE
Q 003001 26 DQVGLMDWHQQYIGKVKHAVFHTQ--KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGI-NDVVDGIDIALGKYVITLS 102 (859)
Q Consensus 26 dq~G~~dW~~~~vG~~~~~~f~~~--~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~-~~~i~~l~~~~~~~~V~Vs 102 (859)
...|...|.... +......+..| ...+++||+++.+|.|.|+|+.+|+++|+..+.. .....+. ....++.++++
T Consensus 40 ~~~g~~~W~~~~-~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~-~~~~~G~i~~g 117 (370)
T COG1520 40 NTSGTLLWSVSL-GSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGP-ILGSDGKIYVG 117 (370)
T ss_pred ccCcceeeeeec-ccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCc-eEEeCCeEEEe
Confidence 445888898763 33222334444 6679999999999999999999999999998875 1112222 23446678878
Q ss_pred cCCCeEEEEeCCCCcEeEEEeccC-ccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCc-ceee
Q 003001 103 SDGSTLRAWNLPDGQMVWESFLRG-SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE-SVEV 179 (859)
Q Consensus 103 ~~g~~v~Ald~~tG~llW~~~~~~-~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~-~~~~ 179 (859)
+..+.++++|+.+|+++|+..... +.. ... ++..++.|++. .+|.++|+|..||+++|+++.+.+ ....
T Consensus 118 ~~~g~~y~ld~~~G~~~W~~~~~~~~~~-~~~-------~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 118 SWDGKLYALDASTGTLVWSRNVGGSPYY-ASP-------PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred cccceEEEEECCCCcEEEEEecCCCeEE-ecC-------cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 776799999999999999999887 222 111 22336777877 589999999999999999988753 1111
Q ss_pred eeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCcc---------CceEEecCcEEEEEECCCCeEEE
Q 003001 180 QQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFV---------GDVALVSSDTLVTLDTTRSILVT 250 (859)
Q Consensus 180 ~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s---------~~~~~v~~~~lv~~d~~~~~l~v 250 (859)
.... ...++.+|+.... . ...++|+|+.+|+..|+.+...+.+.+ ...+++++++ |.-..++.+..
T Consensus 190 ~~~~-~~~~~~vy~~~~~-~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~--~~~~~~g~~~~ 264 (370)
T COG1520 190 YGSP-AIASGTVYVGSDG-Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGV--YAGSYGGKLLC 264 (370)
T ss_pred ccCc-eeecceEEEecCC-C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcE--EEEecCCeEEE
Confidence 1111 2467888875442 1 236999999999999997654443221 2344445443 22234456777
Q ss_pred EEeecCe
Q 003001 251 VSFKNRK 257 (859)
Q Consensus 251 ~~L~sg~ 257 (859)
++..+|+
T Consensus 265 l~~~~G~ 271 (370)
T COG1520 265 LDADTGE 271 (370)
T ss_pred EEcCCCc
Confidence 7777776
No 14
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.32 E-value=7.4e-11 Score=142.91 Aligned_cols=191 Identities=14% Similarity=0.215 Sum_probs=116.6
Q ss_pred ccccccEeEEEeccCceee----------eeeee------------eccCCCEEEEEeCCCEEEEEECCCCccceEEEcC
Q 003001 25 EDQVGLMDWHQQYIGKVKH----------AVFHT------------QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLG 82 (859)
Q Consensus 25 edq~G~~dW~~~~vG~~~~----------~~f~~------------~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~ 82 (859)
+.+.|+..|++..-..... +.+.. |...+++||++|.+|.|+|||++||+++|+...+
T Consensus 210 Da~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~ 289 (764)
T TIGR03074 210 DAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNN 289 (764)
T ss_pred ECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCC
Confidence 4678999999986322111 11111 3345779999999999999999999999986543
Q ss_pred CCc--------------ceeeeeeeecCEEEEEEcC----------CCeEEEEeCCCCcEeEEEeccCccccC-----Cc
Q 003001 83 IND--------------VVDGIDIALGKYVITLSSD----------GSTLRAWNLPDGQMVWESFLRGSKHSK-----PL 133 (859)
Q Consensus 83 ~~~--------------~i~~l~~~~~~~~V~Vs~~----------g~~v~Ald~~tG~llW~~~~~~~~ls~-----~~ 133 (859)
... .+.+. +.+.+++|++++. .+.|+|+|+.||+++|++....+.... ..
T Consensus 290 G~vdl~~~~g~~~~g~~~~ts~-P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~ 368 (764)
T TIGR03074 290 GTVDLTAGMGTTPPGYYYPTSP-PLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGET 368 (764)
T ss_pred CceeeecccCcCCCcccccccC-CEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCE
Confidence 210 01122 3455667776632 468999999999999999864332100 00
Q ss_pred cccccc-----ccccC-CCeEEE-------------------EeCCEEEEEEcCCCcEEEEEeccCcce----eeee--E
Q 003001 134 LLVPTN-----LKVDK-DSLILV-------------------SSKGCLHAVSSIDGEILWTRDFAAESV----EVQQ--V 182 (859)
Q Consensus 134 ~~~~~~-----~~~~~-~~~VvV-------------------~~~g~l~ald~~tG~~~W~~~~~~~~~----~~~~--~ 182 (859)
-..+.. ...+. .+.+++ ...+.|.|||++||+.+|.++....++ .+.+ +
T Consensus 369 ~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L 448 (764)
T TIGR03074 369 YTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSL 448 (764)
T ss_pred eccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceE
Confidence 000000 01111 123333 125789999999999999998743211 1111 2
Q ss_pred EEeec-CC----eEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003001 183 IQLDE-SD----QIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 183 v~~~~-~~----~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v 220 (859)
++... ++ .||..+-+| .+++||.+||+++|..+.
T Consensus 449 ~d~~~~~G~~~~~v~~~~K~G----~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 449 VDLPDADGTTVPALVAPTKQG----QIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EeeecCCCcEeeEEEEECCCC----EEEEEECCCCCEEeecee
Confidence 22222 44 455444333 699999999999998753
No 15
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.31 E-value=8e-11 Score=133.19 Aligned_cols=186 Identities=20% Similarity=0.352 Sum_probs=126.1
Q ss_pred cccccccEeEEEeccCceeeeeeeee-ccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE
Q 003001 24 YEDQVGLMDWHQQYIGKVKHAVFHTQ-KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS 102 (859)
Q Consensus 24 ~edq~G~~dW~~~~vG~~~~~~f~~~-~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs 102 (859)
++.+.|+..|+..+.+.. ..+..| ...+++||+++.+|.++|||++||+++|++..+....+... +..++++|++.
T Consensus 83 ~d~~~g~~~W~~~~~~~~--~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~-~v~~~~~v~~~ 159 (370)
T COG1520 83 LNPDTGLVKWSYPLLGAV--AQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP-PVVGDGTVYVG 159 (370)
T ss_pred EeCCCCcEEecccCcCcc--eeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecC-cEEcCcEEEEe
Confidence 456788888999887611 122222 22478899999999999999999999999999871001122 34677888877
Q ss_pred cCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe---CCEEEEEEcCCCcEEEEEecc----Cc
Q 003001 103 SDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFA----AE 175 (859)
Q Consensus 103 ~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~---~g~l~ald~~tG~~~W~~~~~----~~ 175 (859)
++.+.++|+|+.+|+++|+.....+ +. ...... +...++.+++.. ++.++|+|+.+|..+|+.+.. ..
T Consensus 160 s~~g~~~al~~~tG~~~W~~~~~~~-~~--~~~~~~--~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~ 234 (370)
T COG1520 160 TDDGHLYALNADTGTLKWTYETPAP-LS--LSIYGS--PAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRT 234 (370)
T ss_pred cCCCeEEEEEccCCcEEEEEecCCc-cc--cccccC--ceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcc
Confidence 5557999999999999999988654 21 111111 223356777753 458999999999999996432 11
Q ss_pred ceeeeeEE---EeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeee
Q 003001 176 SVEVQQVI---QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAA 221 (859)
Q Consensus 176 ~~~~~~~v---~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~ 221 (859)
.......+ ....++.+|..+..| +++++|..+|+++|+....
T Consensus 235 ~~~~~~~~~~~~v~v~~~~~~~~~~g----~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 235 AISTTPAVDGGPVYVDGGVYAGSYGG----KLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cccccccccCceEEECCcEEEEecCC----eEEEEEcCCCceEEEEecc
Confidence 11000110 113455556544444 5999999999999999754
No 16
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.30 E-value=7.5e-11 Score=138.89 Aligned_cols=189 Identities=16% Similarity=0.221 Sum_probs=116.4
Q ss_pred ccccccEeEEEeccCcee-ee-----ee-eeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc---ceeeeeeee
Q 003001 25 EDQVGLMDWHQQYIGKVK-HA-----VF-HTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIAL 94 (859)
Q Consensus 25 edq~G~~dW~~~~vG~~~-~~-----~f-~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~---~i~~l~~~~ 94 (859)
+.+.|+..|++..-.... .. .. ..+...+++||+++.+|.|+|||++||+++|++.+.... .+.+. +..
T Consensus 85 Da~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tss-P~v 163 (527)
T TIGR03075 85 DAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAA-PLV 163 (527)
T ss_pred ECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCC-cEE
Confidence 567899999998622110 00 00 124456789999999999999999999999999875321 12222 234
Q ss_pred cCEEEEEEcC------CCeEEEEeCCCCcEeEEEeccCcccc-------------------------CCccccccccccc
Q 003001 95 GKYVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHS-------------------------KPLLLVPTNLKVD 143 (859)
Q Consensus 95 ~~~~V~Vs~~------g~~v~Ald~~tG~llW~~~~~~~~ls-------------------------~~~~~~~~~~~~~ 143 (859)
.++.|+++.. .+.|+|+|++||+++|++....+.-. ....+-.. ...|
T Consensus 164 ~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~-~s~D 242 (527)
T TIGR03075 164 VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGT-GSYD 242 (527)
T ss_pred ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCc-eeEc
Confidence 4556666432 36899999999999999887543200 00000000 0122
Q ss_pred C-CCeEEEEe------CC-----------EEEEEEcCCCcEEEEEeccCcce------eeeeEEEeecCCe---EEEEEe
Q 003001 144 K-DSLILVSS------KG-----------CLHAVSSIDGEILWTRDFAAESV------EVQQVIQLDESDQ---IYVVGY 196 (859)
Q Consensus 144 ~-~~~VvV~~------~g-----------~l~ald~~tG~~~W~~~~~~~~~------~~~~~v~~~~~~~---vyvv~~ 196 (859)
. .+.||+-. ++ .|.|||++||+.+|.++....+. ....+++...++. +++.
T Consensus 243 ~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~-- 320 (527)
T TIGR03075 243 PETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAH-- 320 (527)
T ss_pred CCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEE--
Confidence 1 34566632 22 89999999999999998753321 1112333222333 3332
Q ss_pred cCCceeEEEEEEcCCCceeeee
Q 003001 197 AGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~w~~ 218 (859)
+.+++.+++||..||+++|..
T Consensus 321 -~~K~G~~~vlDr~tG~~i~~~ 341 (527)
T TIGR03075 321 -ADRNGFFYVLDRTNGKLLSAE 341 (527)
T ss_pred -eCCCceEEEEECCCCceeccc
Confidence 223447999999999998754
No 17
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=7e-08 Score=99.53 Aligned_cols=155 Identities=16% Similarity=0.295 Sum_probs=116.6
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~ 132 (859)
...||.++..+.+.|+|+++|+..|++.++.. +.+.+...|+. |+++-..+.|+-++-+||.+.|.+..-.++-.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~R--iE~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-- 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR--IECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-- 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCce--eeeeeEEECCE-EEEEEccCcEEEEEecchhheeeeeehhhhcc--
Confidence 45699999999999999999999999999876 44443345665 55576667899999999999999987665431
Q ss_pred cccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 133 LLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 133 ~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
.+.+ ..+ .+.++.. .|+.++|||..+=.-+|+.+-+.... ...++ ...++.+|+....| .|.|.+.++
T Consensus 98 ~a~~----d~~-~glIycgshd~~~yalD~~~~~cVykskcgG~~f-~sP~i-~~g~~sly~a~t~G----~vlavt~~~ 166 (354)
T KOG4649|consen 98 RAQC----DFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF-VSPVI-APGDGSLYAAITAG----AVLAVTKNP 166 (354)
T ss_pred ceEE----cCC-CceEEEecCCCcEEEecccccceEEecccCCcee-cccee-cCCCceEEEEeccc----eEEEEccCC
Confidence 1121 112 3566665 49999999999999999977665433 22232 24578899877777 499999999
Q ss_pred C--ceeeeeeeecc
Q 003001 212 G--ELLNHETAAFS 223 (859)
Q Consensus 212 G--~~~w~~~v~~~ 223 (859)
+ ..+|......|
T Consensus 167 ~~~~~~w~~~~~~P 180 (354)
T KOG4649|consen 167 YSSTEFWAATRFGP 180 (354)
T ss_pred CCcceehhhhcCCc
Confidence 9 88999976666
No 18
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=4.9e-06 Score=86.17 Aligned_cols=177 Identities=14% Similarity=0.157 Sum_probs=129.3
Q ss_pred ccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeee-eeecCEEEEEEc
Q 003001 25 EDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSS 103 (859)
Q Consensus 25 edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~-~~~~~~~V~Vs~ 103 (859)
+.|.|+.-|++-+-++....... -++.|+++--+|.|+-|+.+||+..|.....+. +..-+ ...+.++++.++
T Consensus 39 d~~sG~~~We~ilg~RiE~sa~v----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~--vk~~a~~d~~~glIycgs 112 (354)
T KOG4649|consen 39 DPQSGNLIWEAILGVRIECSAIV----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET--VKVRAQCDFDGGLIYCGS 112 (354)
T ss_pred cCCCCcEEeehhhCceeeeeeEE----ECCEEEEEEccCcEEEEEecchhheeeeeehhh--hccceEEcCCCceEEEec
Confidence 67899999999886665533222 377899999999999999999999999987665 32111 124667888898
Q ss_pred CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCC--cEEEEEeccCcceeee
Q 003001 104 DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDG--EILWTRDFAAESVEVQ 180 (859)
Q Consensus 104 ~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG--~~~W~~~~~~~~~~~~ 180 (859)
.+++++|+|..+=.-+|+.+-.+...+.+ ... ..++.+++. ..|.|.|.+.+++ ...|......|-..-.
T Consensus 113 hd~~~yalD~~~~~cVykskcgG~~f~sP--~i~-----~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~sp 185 (354)
T KOG4649|consen 113 HDGNFYALDPKTYGCVYKSKCGGGTFVSP--VIA-----PGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASP 185 (354)
T ss_pred CCCcEEEecccccceEEecccCCceeccc--eec-----CCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCc
Confidence 88899999999999999988877665222 211 125778885 6999999999999 8999988766543111
Q ss_pred eEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecc
Q 003001 181 QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS 223 (859)
Q Consensus 181 ~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~ 223 (859)
+++ +..+.....+| .+.++| ..|+++|+..-..|
T Consensus 186 lcv----~~sv~i~~VdG----~l~~f~-~sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 186 LCV----GSSVIITTVDG----VLTSFD-ESGRQVWRPATKGP 219 (354)
T ss_pred eec----cceEEEEEecc----EEEEEc-CCCcEEEeecCCCc
Confidence 221 23334444555 599999 79999998864444
No 19
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=7.5e-07 Score=101.47 Aligned_cols=205 Identities=18% Similarity=0.212 Sum_probs=124.1
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCccee-------eee--eeecC------EEEEEEcCCCeEEEEeCCCC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVD-------GID--IALGK------YVITLSSDGSTLRAWNLPDG 116 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~-------~l~--~~~~~------~~V~Vs~~g~~v~Ald~~tG 116 (859)
.++.+|+.|.-+.+.|||++||+++|+.+-..+.++. ++. ..... ..|++...+.+|.|+|++||
T Consensus 213 vgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tG 292 (773)
T COG4993 213 VGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADTG 292 (773)
T ss_pred ECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceEEEEeCCCC
Confidence 4788999999999999999999999999876553222 110 01112 23666666779999999999
Q ss_pred cEeEEEeccCccc-------cCCcccccccccccCCCeEEE-E----------eCCEEEEEEcCCCcEEEEEeccCccee
Q 003001 117 QMVWESFLRGSKH-------SKPLLLVPTNLKVDKDSLILV-S----------SKGCLHAVSSIDGEILWTRDFAAESVE 178 (859)
Q Consensus 117 ~llW~~~~~~~~l-------s~~~~~~~~~~~~~~~~~VvV-~----------~~g~l~ald~~tG~~~W~~~~~~~~~~ 178 (859)
++.|.+.-.+... .++-...+.+.+......+++ . ..|.+.++|..+|+..|.++...++.+
T Consensus 293 kvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t 372 (773)
T COG4993 293 KVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPT 372 (773)
T ss_pred cEeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEccCCCCCCCC
Confidence 9999976543211 011112222212222222333 2 157889999999999999987654421
Q ss_pred ----eee-EE---------Ee--ecCCeEEEEEec------C--------CceeEEEEEEcCCCceeeeeeeecc--cCc
Q 003001 179 ----VQQ-VI---------QL--DESDQIYVVGYA------G--------SSQFHAYQINAMNGELLNHETAAFS--GGF 226 (859)
Q Consensus 179 ----~~~-~v---------~~--~~~~~vyvv~~~------g--------~~~~~v~ald~~tG~~~w~~~v~~~--~~~ 226 (859)
+.+ -. .+ ..-+.||+-.-. | .++-.++|+|+.||+..|-++..-. ++.
T Consensus 373 ~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtvhhDlWDm 452 (773)
T COG4993 373 APTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTVHHDLWDM 452 (773)
T ss_pred CCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeeccCcchhcc
Confidence 000 00 01 134566653211 1 1234589999999999999974321 222
Q ss_pred cC--ceEEe----cCc---EEEEEECCCCeEEEEEeecCe
Q 003001 227 VG--DVALV----SSD---TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 227 s~--~~~~v----~~~---~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.. ...+. ++. .++..+ .+|.++++|-.+|+
T Consensus 453 Dvp~qp~L~D~~~DG~~vpalv~pt-k~G~~YVlDRrtGe 491 (773)
T COG4993 453 DVPAQPTLLDITKDGKVVPALVHPT-KNGFIYVLDRRTGE 491 (773)
T ss_pred cCCCCceEEEeecCCcEeeeeeccc-ccCcEEEEEcCCCc
Confidence 22 22222 111 355555 46889999998887
No 20
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00037 Score=80.12 Aligned_cols=165 Identities=16% Similarity=0.286 Sum_probs=96.6
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcc------------eeeee-eeec-CEEEEEEc---------CCCeE
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDV------------VDGID-IALG-KYVITLSS---------DGSTL 108 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~------------i~~l~-~~~~-~~~V~Vs~---------~g~~v 108 (859)
...|||..|.+..|.|||++||++.|...-..... ..+.+ +..+ .++|+-+. ..+.+
T Consensus 271 c~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVi 350 (773)
T COG4993 271 CPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVI 350 (773)
T ss_pred CceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccc
Confidence 35679999999999999999999999964322100 00111 1122 22333211 13578
Q ss_pred EEEeCCCCcEeEEEeccCcccc------------CCcccccccccccC-CCeEEE-Ee------------------CCEE
Q 003001 109 RAWNLPDGQMVWESFLRGSKHS------------KPLLLVPTNLKVDK-DSLILV-SS------------------KGCL 156 (859)
Q Consensus 109 ~Ald~~tG~llW~~~~~~~~ls------------~~~~~~~~~~~~~~-~~~VvV-~~------------------~g~l 156 (859)
|++|..+|++.|..+-..+.-. .+...-.. ..|. -+.|++ .. ...+
T Consensus 351 r~fdv~tG~l~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~--SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssi 428 (773)
T COG4993 351 RGFDVLTGKLTWAGDPGNPDPTAPTAPGQTYTRNSPNSWASA--SYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSI 428 (773)
T ss_pred cccccccCceEEccCCCCCCCCCCCCCCceeecCCCCccccc--ccCCCCCeEEEeCCCCChhhccCCCCccccccccee
Confidence 9999999999999886554320 00000000 1111 245555 22 2579
Q ss_pred EEEEcCCCcEEEEEeccCcce----eeee--EEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeee
Q 003001 157 HAVSSIDGEILWTRDFAAESV----EVQQ--VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 157 ~ald~~tG~~~W~~~~~~~~~----~~~~--~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (859)
.|+|+.||+.+|.++....++ .+.| +.+...++++.=+-....+.+.++.||..||+++-..
T Consensus 429 vAlD~~TG~~kW~yQtvhhDlWDmDvp~qp~L~D~~~DG~~vpalv~ptk~G~~YVlDRrtGe~lv~~ 496 (773)
T COG4993 429 VALDATTGKLKWVYQTVHHDLWDMDVPAQPTLLDITKDGKVVPALVHPTKNGFIYVLDRRTGELLVPI 496 (773)
T ss_pred EEecCCCcceeeeeeccCcchhcccCCCCceEEEeecCCcEeeeeecccccCcEEEEEcCCCcccccc
Confidence 999999999999998754332 1223 2233345544432233333456899999999987544
No 21
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=97.57 E-value=0.00012 Score=54.72 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=28.6
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcCCC
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGIN 84 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~ 84 (859)
++||+++.+|.|+|||++||+++|+++.+..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 4799999999999999999999999998765
No 22
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.49 E-value=0.21 Score=53.41 Aligned_cols=182 Identities=13% Similarity=0.156 Sum_probs=101.6
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEE-EEcCCCeEEEEeCCCCcEeEEEeccCccccCCcc
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVIT-LSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~-Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~ 134 (859)
++.++.+|.|..+|..+|+.+........ ..++....++..++ .++.++.++.||..+|+.+.+........
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----- 76 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE----- 76 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-----
Confidence 44557789999999999998877654322 22332222333444 34556799999999999877654332211
Q ss_pred cccccccccCC-CeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 135 LVPTNLKVDKD-SLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 135 ~~~~~~~~~~~-~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
.+ ....+ +.+++. .++.+..+|..+++.+...+.... +..+.. ..++..++++..++. .+..+|..+
T Consensus 77 ~~----~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~-~~dg~~l~~~~~~~~--~~~~~d~~~ 146 (300)
T TIGR03866 77 LF----ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---PEGMAV-SPDGKIVVNTSETTN--MAHFIDTKT 146 (300)
T ss_pred EE----EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---cceEEE-CCCCCEEEEEecCCC--eEEEEeCCC
Confidence 11 11223 345554 378999999999988777654321 122221 233444444433321 355578888
Q ss_pred CceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 212 GELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 212 G~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+........ ... ..+.+- .+..++......+.+++.++.+++
T Consensus 147 ~~~~~~~~~~--~~~-~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 147 YEIVDNVLVD--QRP-RFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred CeEEEEEEcC--CCc-cEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 8776543211 111 111121 233343333235788889998876
No 23
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.37 E-value=0.43 Score=54.23 Aligned_cols=192 Identities=13% Similarity=0.110 Sum_probs=102.6
Q ss_pred cccccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEE
Q 003001 20 SLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVI 99 (859)
Q Consensus 20 ~~Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V 99 (859)
..++.+.+..+...+.+.-|.+.... ..+.+++.+|+++.+|.|.-+|+.+++++-+...... ..+.....++..+
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~h~~~--~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~--~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAPHAGL--KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN--PRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTEEEEE--E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE--EEEEEE--TTTEE
T ss_pred EEEEEECCCCeEEEEEcCCCCceeEE--EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC--cceEEEcCCCCEE
Confidence 34677777777777776644442111 1234566799999999999999999999999988655 2234233455566
Q ss_pred EEEc-CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE--Ee-CCEEEEEEcCCCcEEEEEeccCc
Q 003001 100 TLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV--SS-KGCLHAVSSIDGEILWTRDFAAE 175 (859)
Q Consensus 100 ~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV--~~-~g~l~ald~~tG~~~W~~~~~~~ 175 (859)
+++. ..+.+.-+|++|.+++=+......... ..............+.-++ +. .+++..+|-.+.+.+.......+
T Consensus 93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~-~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g 171 (369)
T PF02239_consen 93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVD-GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG 171 (369)
T ss_dssp EEEEEETTEEEEEETTT--EEEEEE--EE-TT-TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--
T ss_pred EEEecCCCceeEeccccccceeeccccccccc-ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc
Confidence 6665 367999999999999988776432210 0000000000011222222 22 46666666666655544333222
Q ss_pred ceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003001 176 SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 176 ~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v 220 (859)
.. +.-.. ...++..|+++..++. ++..+|.++++.++....
T Consensus 172 ~~-~~D~~-~dpdgry~~va~~~sn--~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 172 RF-PHDGG-FDPDGRYFLVAANGSN--KIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp TT-EEEEE-E-TTSSEEEEEEGGGT--EEEEEETTTTEEEEEEE-
T ss_pred cc-ccccc-cCcccceeeecccccc--eeEEEeeccceEEEEeec
Confidence 21 11111 1234444545555433 688999999999876543
No 24
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.35 E-value=0.31 Score=52.11 Aligned_cols=189 Identities=14% Similarity=0.159 Sum_probs=101.8
Q ss_pred CCCEEEEE-eCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVS-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyva-t~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
+++.+|++ +.++.|..+|.++|+.+.+...... ...+....++..++++ ..++.++.||..+++.+.+........
T Consensus 41 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 118 (300)
T TIGR03866 41 DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD--PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPE 118 (300)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC--ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcc
Confidence 45567655 5678999999999988655433222 2222122233455554 446799999999998887766432211
Q ss_pred cCCcccccccccccCCCeEEEE-e-C-CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS-S-K-GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~-~-~-g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
.. ....++..++. . + ..+..+|..+|+.......... +..+..+..+..+++.+..++ .+..
T Consensus 119 --~~-------~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~---~v~i 183 (300)
T TIGR03866 119 --GM-------AVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSEIGG---TVSV 183 (300)
T ss_pred --eE-------EECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcCCCC---EEEE
Confidence 11 11224544443 2 3 3567778888877655432211 112222234445655433232 5888
Q ss_pred EEcCCCceeeeeeeeccc----CccC-ceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 207 INAMNGELLNHETAAFSG----GFVG-DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 207 ld~~tG~~~w~~~v~~~~----~~s~-~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|+.+|+.+-......+. .... .+.+- .+..+++.....+.+++.++.+++
T Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 184 IDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred EEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 999999876544322211 1111 12121 233433433344578888887766
No 25
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.34 E-value=0.034 Score=59.49 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=100.3
Q ss_pred CCCEEEEEeCC---CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat~~---g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.++.+|.+|.. ..|..+|++||+++.++.++...-..|+ ...++.++-++=..+....||+++-+++=+++..++.
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGi-t~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG 132 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGI-TILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG 132 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEE-EEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeE-EEECCEEEEEEecCCeEEEEccccceEEEEEecCCcc
Confidence 47899999863 4899999999999999999887322255 3467778888877789999999999998888877665
Q ss_pred ccCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEE-eecCCeEEEEEecCCceeEEE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ-LDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~-~~~~~~vyvv~~~g~~~~~v~ 205 (859)
.. +. . ++..++.+ ..+|+-+|+++-+..=+.+.........++-- ...++.+|+=-.... .++
T Consensus 133 WG----Lt------~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td---~I~ 198 (264)
T PF05096_consen 133 WG----LT------S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTD---RIV 198 (264)
T ss_dssp -E----EE------E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSS---EEE
T ss_pred eE----EE------c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCC---eEE
Confidence 41 11 1 44444444 56899999999877655544422221111110 125788997444433 589
Q ss_pred EEEcCCCceeeeeee
Q 003001 206 QINAMNGELLNHETA 220 (859)
Q Consensus 206 ald~~tG~~~w~~~v 220 (859)
.+|+.||++.-...+
T Consensus 199 ~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 199 RIDPETGKVVGWIDL 213 (264)
T ss_dssp EEETTT-BEEEEEE-
T ss_pred EEeCCCCeEEEEEEh
Confidence 999999999977654
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.18 E-value=0.2 Score=51.72 Aligned_cols=187 Identities=14% Similarity=0.156 Sum_probs=110.5
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~ 132 (859)
++.+++++.+|.+...|..+++.+.+...... .+..+.....+.+++.++.++.++.||..+++............ ..
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i-~~ 140 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV-NS 140 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE-EE
Confidence 45799999999999999999988877664332 23333222233455555546799999999999988877433221 11
Q ss_pred cccccccccccCCCeEEE-Ee-CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 133 LLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 133 ~~~~~~~~~~~~~~~VvV-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
. ....++.+++ .. +|.+..+|..+++............ ..+.....+..+++.+..| .+..+|..
T Consensus 141 ~-------~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~~~----~i~i~d~~ 207 (289)
T cd00200 141 V-------AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV--NSVAFSPDGEKLLSSSSDG----TIKLWDLS 207 (289)
T ss_pred E-------EEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc--ceEEECCCcCEEEEecCCC----cEEEEECC
Confidence 1 1122244444 44 8999999999998887776433221 2222122333555544433 47888998
Q ss_pred CCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 211 NGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|+.+.+.... +..+.. +.+- .+.++++.+ ..+.+++.++.++.
T Consensus 208 ~~~~~~~~~~~-~~~i~~-~~~~~~~~~~~~~~-~~~~i~i~~~~~~~ 252 (289)
T cd00200 208 TGKCLGTLRGH-ENGVNS-VAFSPDGYLLASGS-EDGTIRVWDLRTGE 252 (289)
T ss_pred CCceecchhhc-CCceEE-EEEcCCCcEEEEEc-CCCcEEEEEcCCce
Confidence 88877655311 111111 1111 223444443 45788888887765
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.17 E-value=0.27 Score=50.76 Aligned_cols=187 Identities=18% Similarity=0.179 Sum_probs=109.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.+...|..+++...+...... .+..+.....+..++.++.++.++.||..+++...+........ .
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i-~ 97 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV-S 97 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcE-E
Confidence 356788889999999999999987777654332 22222112233355555656799999999998888877544222 1
Q ss_pred CcccccccccccCCCeEEE-Ee-CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEe-cCCceeEEEEEE
Q 003001 132 PLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGY-AGSSQFHAYQIN 208 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~-~g~~~~~v~ald 208 (859)
.. ....++.+++ .. +|.+..+|..+++............ ..+.. ...+.+++.+. .| .+..+|
T Consensus 98 ~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i--~~~~~-~~~~~~l~~~~~~~----~i~i~d 163 (289)
T cd00200 98 SV-------AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV--NSVAF-SPDGTFVASSSQDG----TIKLWD 163 (289)
T ss_pred EE-------EEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE--EEEEE-cCcCCEEEEEcCCC----cEEEEE
Confidence 11 1121344444 44 8999999999999888776332221 22221 12244444444 33 478889
Q ss_pred cCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+++.+...... ...+.. +.+. .++.+++... .+.+.+.++.+++
T Consensus 164 ~~~~~~~~~~~~~-~~~i~~-~~~~~~~~~l~~~~~-~~~i~i~d~~~~~ 210 (289)
T cd00200 164 LRTGKCVATLTGH-TGEVNS-VAFSPDGEKLLSSSS-DGTIKLWDLSTGK 210 (289)
T ss_pred ccccccceeEecC-ccccce-EEECCCcCEEEEecC-CCcEEEEECCCCc
Confidence 9888887665411 111111 1121 2224444433 5788888887655
No 28
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.05 E-value=0.53 Score=53.54 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=91.8
Q ss_pred CEEEEE-eCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003001 54 KRVVVS-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (859)
Q Consensus 54 ~~Vyva-t~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~ 132 (859)
+..||. .+.|.|+-+|.+|.+++-+....... ..++....++..+++++.++.|.-+|+.+++++-+........ +
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~--~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAP-HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR--G 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE-EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc-eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc--e
Confidence 445554 45799999999999999998875441 1112112334456665556799999999999999998865432 1
Q ss_pred cccccccccccCC-CeEEEE--eCCEEEEEEcCCCcEEEEEeccCc-----ceeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 133 LLLVPTNLKVDKD-SLILVS--SKGCLHAVSSIDGEILWTRDFAAE-----SVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 133 ~~~~~~~~~~~~~-~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~-----~~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
+ ....+ +.+++. ..+.+..+|.++.+++=+.+.... ......++. ......|+++.-.. .++
T Consensus 83 ---i----~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~-s~~~~~fVv~lkd~--~~I 152 (369)
T PF02239_consen 83 ---I----AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA-SPGRPEFVVNLKDT--GEI 152 (369)
T ss_dssp ---E----EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTT--TEE
T ss_pred ---E----EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe-cCCCCEEEEEEccC--CeE
Confidence 1 12223 456664 489999999999999877655321 111222332 23445566665532 257
Q ss_pred EEEEcCCCceeeeeeeecc
Q 003001 205 YQINAMNGELLNHETAAFS 223 (859)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~ 223 (859)
..+|..+.+.+....+...
T Consensus 153 ~vVdy~d~~~~~~~~i~~g 171 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVG 171 (369)
T ss_dssp EEEETTTSSCEEEEEEE--
T ss_pred EEEEeccccccceeeeccc
Confidence 7888888777665554443
No 29
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.98 E-value=0.17 Score=56.86 Aligned_cols=211 Identities=10% Similarity=0.094 Sum_probs=123.8
Q ss_pred eccCCCEEEEEeC----------CCEEEEEECCCCccceEEEcCCCcc-----ee-eeeeeecCEEEEEEc-C-CCeEEE
Q 003001 49 QKTGRKRVVVSTE----------ENVIASLDLRHGEIFWRHVLGINDV-----VD-GIDIALGKYVITLSS-D-GSTLRA 110 (859)
Q Consensus 49 ~~~~~~~Vyvat~----------~g~l~ALd~~tG~ilWR~~l~~~~~-----i~-~l~~~~~~~~V~Vs~-~-g~~v~A 110 (859)
.+.+++.+|++.. .+.|..+|++|++++.+..++.... .. .+....++..++|+. + .+.|..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 4567888999865 7999999999999999999865511 00 222234556677655 3 578999
Q ss_pred EeCCCCcEeEEEeccCccc------------cCC---c---------------ccc-c------ccc--cccCCCeEEEE
Q 003001 111 WNLPDGQMVWESFLRGSKH------------SKP---L---------------LLV-P------TNL--KVDKDSLILVS 151 (859)
Q Consensus 111 ld~~tG~llW~~~~~~~~l------------s~~---~---------------~~~-~------~~~--~~~~~~~VvV~ 151 (859)
+|..+|+.+=+...+.... +.+ . ++. + ... ....+..+++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9999999998877754321 000 0 000 0 000 01113456665
Q ss_pred eCCEEEEEEcCCCcE----EEEE-eccC--cceeeee---EEEeecCCeEEEEEecCC------ceeEEEEEEcCCCcee
Q 003001 152 SKGCLHAVSSIDGEI----LWTR-DFAA--ESVEVQQ---VIQLDESDQIYVVGYAGS------SQFHAYQINAMNGELL 215 (859)
Q Consensus 152 ~~g~l~ald~~tG~~----~W~~-~~~~--~~~~~~~---~v~~~~~~~vyvv~~~g~------~~~~v~ald~~tG~~~ 215 (859)
..|.|+.+|..+.+. .|.. .... ..+.|.. +.....++.+|++...+. ..-+|..+|+++++++
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 568888888443332 3432 2111 1111111 222236788998653321 0136999999999999
Q ss_pred eeeeeecccCccCceEEe-cCc-EEEEEECCCCeEEEEEeecCeeeEEEE
Q 003001 216 NHETAAFSGGFVGDVALV-SSD-TLVTLDTTRSILVTVSFKNRKIAFQET 263 (859)
Q Consensus 216 w~~~v~~~~~~s~~~~~v-~~~-~lv~~d~~~~~l~v~~L~sg~~~~~~~ 263 (859)
-...+... .. .+.+- ++. .+++.+...+.+.++|..+++ .++.+
T Consensus 293 ~~i~vG~~--~~-~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k-~i~~i 338 (352)
T TIGR02658 293 RKIELGHE--ID-SINVSQDAKPLLYALSTGDKTLYIFDAETGK-ELSSV 338 (352)
T ss_pred EEEeCCCc--ee-eEEECCCCCeEEEEeCCCCCcEEEEECcCCe-EEeee
Confidence 88765332 11 11121 334 666676667889999999987 24443
No 30
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=96.89 E-value=0.0011 Score=47.37 Aligned_cols=27 Identities=30% Similarity=0.601 Sum_probs=25.4
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEE
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRH 79 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~ 79 (859)
++.+|+++.+|.|+|+|+++|+++|+.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 668999999999999999999999985
No 31
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=96.87 E-value=0.0017 Score=48.89 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=25.9
Q ss_pred CccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCC
Q 003001 73 GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115 (859)
Q Consensus 73 G~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~t 115 (859)
|+++|++.++.+ +... +...++.|++++.+++|+|+|++|
T Consensus 1 G~~~W~~~~~~~--~~~~-~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGP--IWSS-PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS-----S---EECTSEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCC--cCcC-CEEECCEEEEEcCCCEEEEEeCCC
Confidence 899999999765 3322 356677888888778999999975
No 32
>PTZ00421 coronin; Provisional
Probab=96.85 E-value=0.2 Score=59.16 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceE-----EEcCCC-cceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWR-----HVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR-----~~l~~~-~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
++..+++++++|.|...|..++..... ..+... ..+..+... .++.+++.++.++.|+.||..+|+.+=....
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 356788999999999999877643211 112111 122222111 2334555456678999999999987655543
Q ss_pred cCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCcee
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~ 202 (859)
....+ ..+ ....++..++. .|+.+..+|..+|+++.+.....+.. ...+......+.++.+++.+....
T Consensus 167 h~~~V----~sl----a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~-~~~~~w~~~~~~ivt~G~s~s~Dr 237 (493)
T PTZ00421 167 HSDQI----TSL----EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK-SQRCLWAKRKDLIITLGCSKSQQR 237 (493)
T ss_pred CCCce----EEE----EEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc-ceEEEEcCCCCeEEEEecCCCCCC
Confidence 33221 111 11224555553 49999999999999887765433221 112222234566666666543334
Q ss_pred EEEEEEcCCCceeee-eeeecccCccCceEE-ecCcEEEEEECCCCeEEEEEeecCe
Q 003001 203 HAYQINAMNGELLNH-ETAAFSGGFVGDVAL-VSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 203 ~v~ald~~tG~~~w~-~~v~~~~~~s~~~~~-v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+..+|+.+...... .......... .+.+ .+.++++......+.+++.++.++.
T Consensus 238 ~VklWDlr~~~~p~~~~~~d~~~~~~-~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 238 QIMLWDTRKMASPYSTVDLDQSSALF-IPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred eEEEEeCCCCCCceeEeccCCCCceE-EEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 577778876542221 1111111100 1111 1334554444345789999998876
No 33
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=96.83 E-value=0.0024 Score=48.06 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=27.4
Q ss_pred ccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCC
Q 003001 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRH 72 (859)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~t 72 (859)
|+..|++++-+. .+..|...+++||+++.+|.|+|||++|
T Consensus 1 G~~~W~~~~~~~----~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGP----IWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS-------S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCC----cCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 788999988442 2345677799999999999999999986
No 34
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.76 E-value=1.4 Score=49.59 Aligned_cols=192 Identities=12% Similarity=0.032 Sum_probs=114.0
Q ss_pred CCCEEEEEeCC-----CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEE-Ec---------CCCeEEEEeCCCC
Q 003001 52 GRKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SS---------DGSTLRAWNLPDG 116 (859)
Q Consensus 52 ~~~~Vyvat~~-----g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~V-s~---------~g~~v~Ald~~tG 116 (859)
+..++||.+.. |.++.||.++++++=......... +. ...++..+|+ .+ ..+.|..||++++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 46789999887 999999999998876555543321 22 2334445554 44 4579999999999
Q ss_pred cEeEEEeccCccccCCcccccccccccCC-CeEEEE--e-CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEE
Q 003001 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKD-SLILVS--S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIY 192 (859)
Q Consensus 117 ~llW~~~~~~~~ls~~~~~~~~~~~~~~~-~~VvV~--~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vy 192 (859)
++..+..+....-... ...+.......+ +.++|. . +..|..+|.++|+++=+.+.+.... +. ...++.-+
T Consensus 88 ~~~~~i~~p~~p~~~~-~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~----vy-~t~e~~~~ 161 (352)
T TIGR02658 88 LPIADIELPEGPRFLV-GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH----IF-PTANDTFF 161 (352)
T ss_pred cEEeEEccCCCchhhc-cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE----EE-EecCCccE
Confidence 9999999854311000 000000122224 467774 4 8999999999999999988865433 21 23445555
Q ss_pred EEEecCCceeEEEEEEcCCCceeeeeeeec--c--cC-ccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 193 VVGYAGSSQFHAYQINAMNGELLNHETAAF--S--GG-FVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 193 vv~~~g~~~~~v~ald~~tG~~~w~~~v~~--~--~~-~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+.+.+|.. ..+.+| .+|+.. ..+... + -. +..+.+...++..+|.+.+ |+++++++....
T Consensus 162 ~~~~Dg~~--~~v~~d-~~g~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 162 MHCRDGSL--AKVGYG-TKGNPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred EEeecCce--EEEEec-CCCceE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 56777642 234455 356633 221111 1 00 0112222224566677765 999999986644
No 35
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.73 E-value=1.5 Score=49.34 Aligned_cols=227 Identities=13% Similarity=0.180 Sum_probs=113.7
Q ss_pred ccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCC----CEEEEE--ECCCCccceEEEcCCCcce-eeeeeeecCE
Q 003001 25 EDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEE----NVIASL--DLRHGEIFWRHVLGINDVV-DGIDIALGKY 97 (859)
Q Consensus 25 edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~----g~l~AL--d~~tG~ilWR~~l~~~~~i-~~l~~~~~~~ 97 (859)
+++.|+....+.. .....+.+.....+++++|++++. |.|.++ +.++|+..-.......+.. -.+....++.
T Consensus 21 d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~ 99 (345)
T PF10282_consen 21 DEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR 99 (345)
T ss_dssp ETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS
T ss_pred cCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC
Confidence 3445554444332 111122333344568889999884 566555 5555776665554422111 1221122555
Q ss_pred EEEEEcC-CCeEEEEeCCC-CcEeEEEecc-----CccccCCcccccccccccCC-CeEEEE--eCCEEEEEEcCCCc--
Q 003001 98 VITLSSD-GSTLRAWNLPD-GQMVWESFLR-----GSKHSKPLLLVPTNLKVDKD-SLILVS--SKGCLHAVSSIDGE-- 165 (859)
Q Consensus 98 ~V~Vs~~-g~~v~Ald~~t-G~llW~~~~~-----~~~ls~~~~~~~~~~~~~~~-~~VvV~--~~g~l~ald~~tG~-- 165 (859)
.++++.. ++.|..++..+ |++.-..... ++.-......-+.......+ +.++|. ...+|+.++...+.
T Consensus 100 ~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~ 179 (345)
T PF10282_consen 100 FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK 179 (345)
T ss_dssp EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence 6666653 67888888775 8777654321 11000000000000111223 356663 35667666665544
Q ss_pred EEEEEecc-CcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeec-ccCccC-----ceEEe-cCcE
Q 003001 166 ILWTRDFA-AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVG-----DVALV-SSDT 237 (859)
Q Consensus 166 ~~W~~~~~-~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~-~~~~s~-----~~~~v-~~~~ 237 (859)
..-..... .....|+.++....+..+|++.-.. ..+.++.++..+|.......+.. |.+..+ .+.+- ++..
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence 32222111 1222367776555667888876544 45666666766887665555443 333322 12222 3557
Q ss_pred EEEEECCCCeEEEEEe
Q 003001 238 LVTLDTTRSILVTVSF 253 (859)
Q Consensus 238 lv~~d~~~~~l~v~~L 253 (859)
+++.++..+++.+..+
T Consensus 259 lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEECTTTEEEEEEE
T ss_pred EEEEeccCCEEEEEEE
Confidence 7788877788888888
No 36
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=96.70 E-value=0.0036 Score=46.67 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=27.0
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
.++++..++.|+|+|+.||+++|+++......
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~ 33 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPPVD 33 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSGGG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCCCc
Confidence 46667777899999999999999999876543
No 37
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.11 Score=62.13 Aligned_cols=199 Identities=17% Similarity=0.237 Sum_probs=115.1
Q ss_pred ccccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEE
Q 003001 21 LSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVIT 100 (859)
Q Consensus 21 ~Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~ 100 (859)
.|-...-.|.+-|||-+-++.... +-+- .-|+..+.-.+.+-|.++|...|...+... ..++......++.+
T Consensus 59 lAsL~~~tGei~WRqvl~~~~~~~--~~~~----~~~iS~dg~~lr~wn~~~g~l~~~i~l~~g--~~~~~~~v~~~i~v 130 (910)
T KOG2103|consen 59 LASLNLRTGEIIWRQVLEPKTSGL--GVPL----TNTISVDGRYLRSWNTNNGILDWEIELADG--FKGLLLEVNKGIAV 130 (910)
T ss_pred hheecccCCcEEEEEeccCCCccc--Ccce----eEEEccCCcEEEeecCCCceeeeecccccc--cceeEEEEccceEE
Confidence 455556689999999874443221 1111 125666677899999999999999988765 22221233444445
Q ss_pred EEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-----eCCEEEEEEcCCCcEE-EEEeccC
Q 003001 101 LSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-----SKGCLHAVSSIDGEIL-WTRDFAA 174 (859)
Q Consensus 101 Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-----~~g~l~ald~~tG~~~-W~~~~~~ 174 (859)
+++ +....|++.|+..+..... .....+ .....+.++++ ++-.+.+++..+|++. |+...-.
T Consensus 131 ~~g-------~~~~~g~l~w~~~~~~~~~-~~~q~~----~~~~t~vvy~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~~ 198 (910)
T KOG2103|consen 131 LNG-------HTRKFGELKWVESFSISIE-EDLQDA----KIYGTDVVYVLGLLKRSGSCVQQVFSDDGEVTGPQSTVLG 198 (910)
T ss_pred Ecc-------eeccccceeehhhccccch-hHHHHh----hhccCcEEEEEEEEecCCceEEEEEccCCcEecceeeeec
Confidence 443 8889999999998875532 111100 11123444442 3567999999999988 9887776
Q ss_pred cceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeee-eeecccCccCceEEecC---cEEEEEECCCC
Q 003001 175 ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE-TAAFSGGFVGDVALVSS---DTLVTLDTTRS 246 (859)
Q Consensus 175 ~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~-~v~~~~~~s~~~~~v~~---~~lv~~d~~~~ 246 (859)
|......| + ....++.++..|. +..+|...+..--.+ ....-..+.++...+.+ +.++|++..++
T Consensus 199 pw~~~~~c--~-~~k~~vl~~s~g~----l~s~di~~~~~~~~q~~~e~l~~l~g~~i~~~g~~~~~~V~V~s~~~ 267 (910)
T KOG2103|consen 199 PWFKVLSC--S-TDKEVVLVCSNGT----LISLDISSQKVQISQLLAEILLPLTGDLILLDGNKHTAMVSVNSSSN 267 (910)
T ss_pred Cccccccc--c-cccceEEEcCCCC----eEEEEEEeeccchhhhhhhhhhccCCceEEecCCCceeEEEEecCCC
Confidence 66644444 2 3344444566663 555555433322111 11112344444444432 37788886533
No 38
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.12 E-value=3.2 Score=46.60 Aligned_cols=195 Identities=11% Similarity=0.151 Sum_probs=104.2
Q ss_pred EEEEeCC----CE--EEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-c---CCCeEEEEeCC--CCcEeEEEe
Q 003001 56 VVVSTEE----NV--IASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-S---DGSTLRAWNLP--DGQMVWESF 123 (859)
Q Consensus 56 Vyvat~~----g~--l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~---~g~~v~Ald~~--tG~llW~~~ 123 (859)
+||++.. +- ++.+|.++|++--............+.....+..+|+. . ..+.|.+|+.. +|++.--.+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5666654 33 45567788887766654333222233222345555553 3 24577666654 388877655
Q ss_pred ccCccccCCcccccccccccC-CCeEEEE--eCCEEEEEEcCC-CcEEEEE-----eccCcc------eeeeeEEEeecC
Q 003001 124 LRGSKHSKPLLLVPTNLKVDK-DSLILVS--SKGCLHAVSSID-GEILWTR-----DFAAES------VEVQQVIQLDES 188 (859)
Q Consensus 124 ~~~~~ls~~~~~~~~~~~~~~-~~~VvV~--~~g~l~ald~~t-G~~~W~~-----~~~~~~------~~~~~~v~~~~~ 188 (859)
..... .....+ ..+. .+.+++. .+|.+..++..+ |++.-.. ....+. .-+-++.....+
T Consensus 82 ~~~~g--~~p~~i----~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 82 VPSGG--SSPCHI----AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEESS--SCEEEE----EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred eccCC--CCcEEE----EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 54211 111121 2222 3456664 489998888766 7654432 111110 112234333355
Q ss_pred CeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEee--cCe
Q 003001 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFK--NRK 257 (859)
Q Consensus 189 ~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~--sg~ 257 (859)
..+|+. .-|...+.++.+|..+|+......+..+.+-....+.. .+.++++++...+.+.++.+. +|.
T Consensus 156 ~~v~v~-dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 156 RFVYVP-DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp SEEEEE-ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CEEEEE-ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 667764 45666677777777777765544444443332233333 445777888888899999998 555
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.01 E-value=0.32 Score=53.44 Aligned_cols=157 Identities=12% Similarity=0.100 Sum_probs=95.5
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc-
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH- 129 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l- 129 (859)
+++++++++.++|.|.+.|++||+++-+..-...............-+++-+..++.+...+..+|+++=-.....+.+
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccc
Confidence 3588999999999999999999999988763222111111111222344434446688888888999887776433322
Q ss_pred ------cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCce
Q 003001 130 ------SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (859)
Q Consensus 130 ------s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~ 201 (859)
.......+. ...=.+.+. -||+|.-+|.+.-+++-......+.+ ++.. .....+|..+.+|
T Consensus 280 ~~~e~~~esve~~~~----ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~---~l~w-~~t~~l~t~c~~g--- 348 (399)
T KOG0296|consen 280 PSQEELDESVESIPS----SSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVT---KLKW-LNTDYLLTACANG--- 348 (399)
T ss_pred ccchhhhhhhhhccc----ccccchhhcccccceEEEEecccchhheeccCCCceE---EEEE-cCcchheeeccCc---
Confidence 011111111 000112221 28888888887766655555544422 3322 1356677767666
Q ss_pred eEEEEEEcCCCceeeeee
Q 003001 202 FHAYQINAMNGELLNHET 219 (859)
Q Consensus 202 ~~v~ald~~tG~~~w~~~ 219 (859)
+|..+|+.||+.+..++
T Consensus 349 -~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 349 -KVRQWDARTGQLKFTYT 365 (399)
T ss_pred -eEEeeeccccceEEEEe
Confidence 69999999999998885
No 40
>PTZ00420 coronin; Provisional
Probab=96.00 E-value=2.3 Score=51.00 Aligned_cols=191 Identities=11% Similarity=0.074 Sum_probs=105.0
Q ss_pred CCEEEEEeCCCEEEEEECCCCccce------EEEcCCC-cceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFW------RHVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilW------R~~l~~~-~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
+..++.++.+|.|.-.|..++...- ...+... ..+..+... .+..+++.++.++.|+-||..+|+.+++...
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~ 166 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM 166 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 4678889999999999988764311 1112211 122222111 2444444455567999999999999888764
Q ss_pred cCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEE----eecCCeEEEEEecC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ----LDESDQIYVVGYAG 198 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~----~~~~~~vyvv~~~g 198 (859)
..... .+ ....++.+++. .|+.+..+|..+|+.+-++....+.. ....+. +..++.+...|+++
T Consensus 167 ~~~V~-----Sl----swspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~-~s~~v~~~~fs~d~~~IlTtG~d~ 236 (568)
T PTZ00420 167 PKKLS-----SL----KWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK-NTKNIWIDGLGGDDNYILSTGFSK 236 (568)
T ss_pred CCcEE-----EE----EECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc-eeEEEEeeeEcCCCCEEEEEEcCC
Confidence 33221 11 12225656664 38999999999999886654433221 111111 12344566666665
Q ss_pred CceeEEEEEEcCC-CceeeeeeeecccCccCce-EEe--c-CcEEEEEECCCCeEEEEEeecCe
Q 003001 199 SSQFHAYQINAMN-GELLNHETAAFSGGFVGDV-ALV--S-SDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 199 ~~~~~v~ald~~t-G~~~w~~~v~~~~~~s~~~-~~v--~-~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.....+.-+|+.+ ++++-...+... .+.+ .+. . +.++++.. ..+.+++.++..+.
T Consensus 237 ~~~R~VkLWDlr~~~~pl~~~~ld~~---~~~L~p~~D~~tg~l~lsGk-GD~tIr~~e~~~~~ 296 (568)
T PTZ00420 237 NNMREMKLWDLKNTTSALVTMSIDNA---SAPLIPHYDESTGLIYLIGK-GDGNCRYYQHSLGS 296 (568)
T ss_pred CCccEEEEEECCCCCCceEEEEecCC---ccceEEeeeCCCCCEEEEEE-CCCeEEEEEccCCc
Confidence 3333567778774 566543322111 1111 111 2 23455553 34678888887665
No 41
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=95.99 E-value=0.012 Score=42.01 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=24.3
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEe
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~ 123 (859)
..++.+++++.++.++|+|+.+|+++|+.+
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence 345567777767899999999999999863
No 42
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.60 E-value=0.28 Score=57.69 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=78.9
Q ss_pred CCEEEEEeC-----CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc
Q 003001 53 RKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 53 ~~~Vyvat~-----~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~ 127 (859)
.+.+|+.+. ....+++| .+|.++|...+....... +. ...++.++.+.. ..++.+|. .|+++|++.+...
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~-~~-~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~ 187 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS-FK-QLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGG 187 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS-EE-E-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TT
T ss_pred CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce-ee-EcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCc
Confidence 445666655 67899999 589999999886652211 21 234444443332 58999998 6999999999874
Q ss_pred c--ccCCcccccccccccCCCeEEEE-e--------------CCEEEEEEcCCCcEEEEEeccCcc---ee---------
Q 003001 128 K--HSKPLLLVPTNLKVDKDSLILVS-S--------------KGCLHAVSSIDGEILWTRDFAAES---VE--------- 178 (859)
Q Consensus 128 ~--ls~~~~~~~~~~~~~~~~~VvV~-~--------------~g~l~ald~~tG~~~W~~~~~~~~---~~--------- 178 (859)
. +.-+....+ +|.++++ . ...+.-+| .+|+++|+|+...-- ..
T Consensus 188 ~~~~HHD~~~l~-------nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~ 259 (477)
T PF05935_consen 188 YYDFHHDIDELP-------NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYG 259 (477)
T ss_dssp EE-B-S-EEE-T-------TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SS
T ss_pred ccccccccEECC-------CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccccccccc
Confidence 3 111222222 4444442 2 45789999 999999999774210 00
Q ss_pred ------------eee-EEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 179 ------------VQQ-VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 179 ------------~~~-~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
... +..-..++.+++ +.-..+ .|..+|..||++.|-.-
T Consensus 260 ~~~~~~~~~DW~H~Nsi~yd~~dd~iiv-SsR~~s--~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 260 DISGSGGGRDWLHINSIDYDPSDDSIIV-SSRHQS--AVIKIDYRTGKIKWILG 310 (477)
T ss_dssp SSS-SSTTSBS--EEEEEEETTTTEEEE-EETTT---EEEEEE-TTS-EEEEES
T ss_pred ccccCCCCCCccccCccEEeCCCCeEEE-EcCcce--EEEEEECCCCcEEEEeC
Confidence 000 111123556665 433211 58899999999999883
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.59 E-value=0.52 Score=49.48 Aligned_cols=144 Identities=13% Similarity=0.165 Sum_probs=95.4
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~ 132 (859)
++.+.-+++++.|.--|-+||.++=+..++.+ +..+....+++++++ .+|+.|.-||+.+=.++=++.++..+- +
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~--VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~--S 229 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSP--VTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVE--S 229 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCCC--CcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccccc--c
Confidence 44566667888899999999999988888766 444444456667775 457789999999999998888876543 3
Q ss_pred cccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 133 LLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 133 ~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
+.+-| ...+||. .++.++.+|-.+|+.+=.+.... .+.|..+.|... +.++|.-.+
T Consensus 230 ASL~P-------~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-------------~gpVhcVrFSPd--GE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHP-------KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-------------FGPVHCVRFSPD--GELYASGSE 287 (334)
T ss_pred ccccC-------CCceEEecCcceEEEEEeccCCceeeecccCC-------------CCceEEEEECCC--CceeeccCC
Confidence 33433 4567775 38899999999998776652221 222233333321 135555566
Q ss_pred CCcee-eeeeeecc
Q 003001 211 NGELL-NHETAAFS 223 (859)
Q Consensus 211 tG~~~-w~~~v~~~ 223 (859)
+|.++ ||....-+
T Consensus 288 DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEEEEecCCCc
Confidence 77654 98864433
No 44
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.08 E-value=5.7 Score=47.18 Aligned_cols=189 Identities=13% Similarity=0.142 Sum_probs=115.3
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcC----CCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLG----INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~----~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~ 127 (859)
..+.+-++-.+|.|---|+.. -|-+... ....+.++.-+.++++..++. .|.+.-||+.+|+++-+.+..+.
T Consensus 36 kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~-sg~i~EwDl~~lk~~~~~d~~gg 111 (691)
T KOG2048|consen 36 KSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL-SGSITEWDLHTLKQKYNIDSNGG 111 (691)
T ss_pred cCCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEccCCeEEeecC-CceEEEEecccCceeEEecCCCc
Confidence 355577777788888888877 4776542 112355552223556666555 45999999999999998887655
Q ss_pred cccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 128 KHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
.. ..+. .-.....+.|. .+|.++-++...|+...+............+.....+..++..+.+| .+-+
T Consensus 112 ~I----Wsia---i~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg----~Iri 180 (691)
T KOG2048|consen 112 AI----WSIA---INPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG----VIRI 180 (691)
T ss_pred ce----eEEE---eCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc----eEEE
Confidence 43 2222 11112344454 58899999999999888877765432122221111222244333333 6889
Q ss_pred EEcCCCceeeeeeeecccCccC-------ceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 207 INAMNGELLNHETAAFSGGFVG-------DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 207 ld~~tG~~~w~~~v~~~~~~s~-------~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.|+.+|+.+--.+.... .+.. ++.++..+.++|.|+ .|....=|-..|+
T Consensus 181 wd~~~~~t~~~~~~~~d-~l~k~~~~iVWSv~~Lrd~tI~sgDS-~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLD-RLSKREPTIVWSVLFLRDSTIASGDS-AGTVTFWDSIFGT 236 (691)
T ss_pred EEcCCCceEEEeeeccc-ccccCCceEEEEEEEeecCcEEEecC-CceEEEEcccCcc
Confidence 99999998872221111 1111 234457889999996 5877777766666
No 45
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.82 E-value=6.2 Score=47.97 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=89.4
Q ss_pred CEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEeccC
Q 003001 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFAA 174 (859)
Q Consensus 96 ~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~~~~ 174 (859)
+.+++ +..+|.+.-||..+|+++.+++...... . ...++ + + -+.|.+ +.+|++.-++.+.|+.+-+++.+.
T Consensus 173 NKIvv-Gs~~G~lql~Nvrt~K~v~~f~~~~s~I-T--~ieqs--P-a-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~ 244 (910)
T KOG1539|consen 173 NKIVV-GSSQGRLQLWNVRTGKVVYTFQEFFSRI-T--AIEQS--P-A-LDVVAIGLENGTVIIFNLKFDKILMSFKQDW 244 (910)
T ss_pred eeEEE-eecCCcEEEEEeccCcEEEEecccccce-e--EeccC--C-c-ceEEEEeccCceEEEEEcccCcEEEEEEccc
Confidence 34444 5556689999999999999998765433 1 11110 1 1 123333 359999999999999999998874
Q ss_pred cceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEee
Q 003001 175 ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 175 ~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~ 254 (859)
+..+ .+....++..+.+.+-. .+.+.-+|+..-+..|+.+-+...++.+..++.+..+++..-.+ .+|++-...
T Consensus 245 g~Vt--slSFrtDG~p~las~~~---~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D-nSlk~~vfD 318 (910)
T KOG1539|consen 245 GRVT--SLSFRTDGNPLLASGRS---NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD-NSLKVWVFD 318 (910)
T ss_pred ccee--EEEeccCCCeeEEeccC---CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC-CceeEEEee
Confidence 3331 22212345555554433 23588889988888898875554555554445566666544433 344443333
No 46
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.81 E-value=8.1 Score=42.72 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=91.2
Q ss_pred cCCCEEEEEeC-CCEEEEEECC-CCccceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCC-CCcE---eEEEe
Q 003001 51 TGRKRVVVSTE-ENVIASLDLR-HGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLP-DGQM---VWESF 123 (859)
Q Consensus 51 ~~~~~Vyvat~-~g~l~ALd~~-tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~-tG~l---lW~~~ 123 (859)
++++.+|+++. .+.|..++.. +|++.=............+....++..++++. .++.+..||.+ +|.+ +-...
T Consensus 44 pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 44 PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence 35677998865 5667666654 56531111111111112231222444566554 35789999886 4532 11111
Q ss_pred ccCccccCCcccccccccccCC-CeEEEE--eCCEEEEEEcCC-CcEE----EEEeccCcceeeeeEEEeecCCeEEEEE
Q 003001 124 LRGSKHSKPLLLVPTNLKVDKD-SLILVS--SKGCLHAVSSID-GEIL----WTRDFAAESVEVQQVIQLDESDQIYVVG 195 (859)
Q Consensus 124 ~~~~~ls~~~~~~~~~~~~~~~-~~VvV~--~~g~l~ald~~t-G~~~----W~~~~~~~~~~~~~~v~~~~~~~vyvv~ 195 (859)
..... ..+ ..+.+ +.+++. .++.|..+|..+ |... .....+.+ ..+..+.....+..+|++.
T Consensus 124 ~~~~~----~~~-----~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 124 GLEGC----HSA-----NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred CCCcc----cEe-----EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEe
Confidence 10000 011 12223 456564 478888888866 4321 22222211 1244454334556777754
Q ss_pred ecCCceeEEEEEEcCCCceeeeeeee-cccCccCc-----eEE-ecCcEEEEEECCCCeEEEEEeec
Q 003001 196 YAGSSQFHAYQINAMNGELLNHETAA-FSGGFVGD-----VAL-VSSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 196 ~~g~~~~~v~ald~~tG~~~w~~~v~-~~~~~s~~-----~~~-v~~~~lv~~d~~~~~l~v~~L~s 255 (859)
. +...+.++.++..+|+.....++. .|....+. +.+ .++..+++.+...+.+.++++..
T Consensus 194 ~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 194 E-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred c-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 3 333444555554466654333332 23222221 112 13445666666667788888754
No 47
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.35 E-value=3.9 Score=52.95 Aligned_cols=197 Identities=12% Similarity=0.135 Sum_probs=102.1
Q ss_pred CCEEEEEeCC-CEEEEEECCCCccceE------------------EEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEe
Q 003001 53 RKRVVVSTEE-NVIASLDLRHGEIFWR------------------HVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWN 112 (859)
Q Consensus 53 ~~~Vyvat~~-g~l~ALd~~tG~ilWR------------------~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald 112 (859)
++.+||++.. +.|.-+|..+|.+.=- +.+..+ .++.....++.++|+. .++.|+-||
T Consensus 635 gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P---~gVa~dp~~g~LyVad~~~~~I~v~d 711 (1057)
T PLN02919 635 KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSP---WDVCFEPVNEKVYIAMAGQHQIWEYN 711 (1057)
T ss_pred CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCC---eEEEEecCCCeEEEEECCCCeEEEEE
Confidence 5678998754 6788888877754100 000000 0221112245555543 457899999
Q ss_pred CCCCcEeEEEeccCcc------ccC-CcccccccccccCCC-eEEEE--eCCEEEEEEcCCCcEEEEEeccC--------
Q 003001 113 LPDGQMVWESFLRGSK------HSK-PLLLVPTNLKVDKDS-LILVS--SKGCLHAVSSIDGEILWTRDFAA-------- 174 (859)
Q Consensus 113 ~~tG~llW~~~~~~~~------ls~-~~~~~~~~~~~~~~~-~VvV~--~~g~l~ald~~tG~~~W~~~~~~-------- 174 (859)
..+|...- +...+.. ... .....|.+...+.++ .++|. .+++|..+|..+|...|......
T Consensus 712 ~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 712 ISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred CCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccc
Confidence 99887641 1111000 000 000111112233344 47775 37899999999988765432100
Q ss_pred -----c-----c-eeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeec---------ccCccCc--eEE
Q 003001 175 -----E-----S-VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF---------SGGFVGD--VAL 232 (859)
Q Consensus 175 -----~-----~-~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~---------~~~~s~~--~~~ 232 (859)
+ . ..|..+. ...++.+|+....++ ++..+|+.+|....-..... ...+..+ +.+
T Consensus 791 fG~~dG~g~~~~l~~P~Gva-vd~dG~LYVADs~N~---rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVL-CAKDGQIYVADSYNH---KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred ccCCCCchhhhhccCCceee-EeCCCcEEEEECCCC---EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 0 0 0123332 234567887665443 68888998887764332111 1112122 222
Q ss_pred ecCcEEEEEECCCCeEEEEEeecCe
Q 003001 233 VSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 233 v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
-.++.++..|..++.++++++.++.
T Consensus 867 d~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 867 GENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred eCCCCEEEEECCCCEEEEEECCCCc
Confidence 2334466778888889999988876
No 48
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=94.17 E-value=14 Score=42.86 Aligned_cols=153 Identities=19% Similarity=0.205 Sum_probs=99.0
Q ss_pred ccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC--cceeeee-eeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccC
Q 003001 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--DVVDGID-IALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 50 ~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~--~~i~~l~-~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~ 126 (859)
++++.+...++.+|.++..|-+||+.+=...-+.. +.|.++. .+.+..++++|++ ...+-||.+++++.=++....
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-kt~KIWdVs~~slv~t~~~~~ 277 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-KTIKIWDVSTNSLVSTWPMGS 277 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-ceEEEEEeeccceEEEeecCC
Confidence 34677788888999999999999999876543222 2333331 2356778887775 589999999999998888766
Q ss_pred ccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 127 SKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
... + ..++ ...-++..+-|.-+|.+.-|++.++++.=...-....++-..+ +..+..+|-.+++| .+..
T Consensus 278 ~v~--d-qqvG--~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv--~~d~~~i~SgsyDG----~I~~ 346 (603)
T KOG0318|consen 278 TVE--D-QQVG--CLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV--SPDGKTIYSGSYDG----HINS 346 (603)
T ss_pred chh--c-eEEE--EEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE--cCCCCEEEeeccCc----eEEE
Confidence 532 1 1222 1222223333345999999999999977665544444322222 23455677655665 5787
Q ss_pred EEcCCCce
Q 003001 207 INAMNGEL 214 (859)
Q Consensus 207 ld~~tG~~ 214 (859)
.|..+|.-
T Consensus 347 W~~~~g~~ 354 (603)
T KOG0318|consen 347 WDSGSGTS 354 (603)
T ss_pred EecCCccc
Confidence 88777753
No 49
>PHA02713 hypothetical protein; Provisional
Probab=93.91 E-value=3.5 Score=49.58 Aligned_cols=173 Identities=9% Similarity=0.120 Sum_probs=95.3
Q ss_pred CCCEEEEEeCC-------CEEEEEECCCCccceEEEcCCCccee--eeeeeecCEEEEEEcCC-----CeEEEEeCCCCc
Q 003001 52 GRKRVVVSTEE-------NVIASLDLRHGEIFWRHVLGINDVVD--GIDIALGKYVITLSSDG-----STLRAWNLPDGQ 117 (859)
Q Consensus 52 ~~~~Vyvat~~-------g~l~ALd~~tG~ilWR~~l~~~~~i~--~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG~ 117 (859)
-++.||+.+.. +.+..+|+++.+ |+..-+-+..-. +. +..++.++++||.+ ..+..||+.+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~~~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~~- 377 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRFSL-AVIDDTIYAIGGQNGTNVERTIECYTMGDD- 377 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhceeE-EEECCEEEEECCcCCCCCCceEEEEECCCC-
Confidence 37789988653 357889998874 976543331111 22 34577777777753 24889999876
Q ss_pred EeEEEeccCccccCCcccccccccccCCCeEEEEeC-------------------------CEEEEEEcCCCcEEEEEec
Q 003001 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------------------------GCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 118 llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~-------------------------g~l~ald~~tG~~~W~~~~ 172 (859)
.|+.-.+-+. + ....+ .+.-++.+++.++ ..+.++|+.+. .|+.-.
T Consensus 378 -~W~~~~~mp~---~--r~~~~-~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~ 448 (557)
T PHA02713 378 -KWKMLPDMPI---A--LSSYG-MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLP 448 (557)
T ss_pred -eEEECCCCCc---c--ccccc-EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecC
Confidence 5886322111 1 11100 1122577887642 24778888775 587544
Q ss_pred cCcce-eeeeEEEeecCCeEEEEEecCC-c--eeEEEEEEcCC-CceeeeeeeecccCccC-ceEEecCcEEEEE
Q 003001 173 AAESV-EVQQVIQLDESDQIYVVGYAGS-S--QFHAYQINAMN-GELLNHETAAFSGGFVG-DVALVSSDTLVTL 241 (859)
Q Consensus 173 ~~~~~-~~~~~v~~~~~~~vyvv~~~g~-~--~~~v~ald~~t-G~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~ 241 (859)
+-+.. ....+ +.-++.+|++|...+ . .-.+..+|+.+ . .|+.--..|..... .+.++++.++++.
T Consensus 449 ~m~~~r~~~~~--~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~~~~~~~iyv~G 519 (557)
T PHA02713 449 NFWTGTIRPGV--VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHTILHDNTIMMLH 519 (557)
T ss_pred CCCcccccCcE--EEECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcccccceeEEECCEEEEEe
Confidence 32111 01112 246889999875321 1 12367899987 4 48875455544443 2333355555544
No 50
>PTZ00421 coronin; Provisional
Probab=93.67 E-value=7 Score=46.28 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=81.4
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~ 132 (859)
++.++.++.++.|.-.|.++|+.+=...- ....+..+....++..++.++.++.++.||..+|+.+.+...........
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 35688889999999999999976433221 11223333222234455546667899999999999988766543221000
Q ss_pred cccccccccccCCCeEEEEe-----CCEEEEEEcCCCcEEEE-EeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 133 LLLVPTNLKVDKDSLILVSS-----KGCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 133 ~~~~~~~~~~~~~~~VvV~~-----~g~l~ald~~tG~~~W~-~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
....+ . .+.++..+ ++.+...|..+...... ........ .........++.+|+.+...+ .+..
T Consensus 217 ~~w~~-----~-~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~-~~~~~~d~d~~~L~lggkgDg---~Iri 286 (493)
T PTZ00421 217 CLWAK-----R-KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA-LFIPFFDEDTNLLYIGSKGEG---NIRC 286 (493)
T ss_pred EEEcC-----C-CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc-eEEEEEcCCCCEEEEEEeCCC---eEEE
Confidence 01111 1 23333321 56777777766542222 22111111 101111223445555443122 4777
Q ss_pred EEcCCCceeeee
Q 003001 207 INAMNGELLNHE 218 (859)
Q Consensus 207 ld~~tG~~~w~~ 218 (859)
+|+.+|++.-..
T Consensus 287 wdl~~~~~~~~~ 298 (493)
T PTZ00421 287 FELMNERLTFCS 298 (493)
T ss_pred EEeeCCceEEEe
Confidence 788888876544
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=93.66 E-value=14 Score=41.07 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=82.9
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEcC-CCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSD-GSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~~-g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
..+-+.+++++..-+-.+..+|+ |-..+... +++.... ..-++.++.+++ .|.|+-|...+|...|...-...
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~-FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~-- 149 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCS-FSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE-- 149 (399)
T ss_pred CCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEE-EccCceEEEecCCCccEEEEEcccCceEEEeecccC--
Confidence 34556677777777778888888 66666544 3444332 233445554553 68999999999999999873222
Q ss_pred cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
++..+-. ...+.++.. .||.+......++...=.+.-.....+-..++ .+|+-.+.++..+ .+...
T Consensus 150 --dieWl~W----Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~---pdGKr~~tgy~dg---ti~~W 217 (399)
T KOG0296|consen 150 --DIEWLKW----HPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI---PDGKRILTGYDDG---TIIVW 217 (399)
T ss_pred --ceEEEEe----cccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc---CCCceEEEEecCc---eEEEE
Confidence 2233321 112333332 36655554444432222221111111111111 2344444466544 58999
Q ss_pred EcCCCceeeeee
Q 003001 208 NAMNGELLNHET 219 (859)
Q Consensus 208 d~~tG~~~w~~~ 219 (859)
|++||+++-...
T Consensus 218 n~ktg~p~~~~~ 229 (399)
T KOG0296|consen 218 NPKTGQPLHKIT 229 (399)
T ss_pred ecCCCceeEEec
Confidence 999999997665
No 52
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=1.8 Score=44.57 Aligned_cols=77 Identities=19% Similarity=0.196 Sum_probs=54.3
Q ss_pred CCCEEEEEeC---CCEEEEEECCCCccceEEEcCCCccee-eeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc
Q 003001 52 GRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 52 ~~~~Vyvat~---~g~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~ 127 (859)
.++.+|.+|. ...+...|..+|++.|.+.++.+.-+. |. ...++.+..++-..+.-.-+|+.|=+.+=+++..++
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGi-t~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGI-TKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccce-eeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 4678888886 468999999999999999998421111 33 224555555566566888889888777777766665
Q ss_pred cc
Q 003001 128 KH 129 (859)
Q Consensus 128 ~l 129 (859)
..
T Consensus 133 GW 134 (262)
T COG3823 133 GW 134 (262)
T ss_pred ce
Confidence 44
No 53
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=93.33 E-value=5.1 Score=47.57 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=94.1
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEE-EEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYV-ITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~-V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
..+.+-++.++|++.-++-..|++--...|... ..+-.+ .....+. ++.|+.++.+|+||+..|..+-..+..-..+
T Consensus 121 ~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl-sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 121 ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL-SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE-EecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 356788999999999999999999999999776 222222 1233444 4546667899999999999887444333222
Q ss_pred cCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcE-EEEEeccCcc-------eeeeeEEEeecCCeEEEEEecCCce
Q 003001 130 SKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI-LWTRDFAAES-------VEVQQVIQLDESDQIYVVGYAGSSQ 201 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~-~W~~~~~~~~-------~~~~~~v~~~~~~~vyvv~~~g~~~ 201 (859)
++.-+..- =.|..+.++.+.+-| .+|.+ -|-...+.-. -....+.-...++.++..|.++
T Consensus 200 ~k~~~~iV--------WSv~~Lrd~tI~sgD-S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~--- 267 (691)
T KOG2048|consen 200 SKREPTIV--------WSVLFLRDSTIASGD-SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP--- 267 (691)
T ss_pred ccCCceEE--------EEEEEeecCcEEEec-CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC---
Confidence 11111110 012334677787777 55664 4765443100 0011122123557888888777
Q ss_pred eEEEEEEcCCCceeeeee
Q 003001 202 FHAYQINAMNGELLNHET 219 (859)
Q Consensus 202 ~~v~ald~~tG~~~w~~~ 219 (859)
++.-+...++.--|...
T Consensus 268 -~ii~~~~~~~~~~wv~~ 284 (691)
T KOG2048|consen 268 -KIIQYSLTTNKSEWVIN 284 (691)
T ss_pred -ceEEEEecCCccceeee
Confidence 48888887776667763
No 54
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.03 E-value=18 Score=40.43 Aligned_cols=194 Identities=15% Similarity=0.100 Sum_probs=112.7
Q ss_pred cCCCEEEEE--eCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCC-CCcEeEEEeccCc
Q 003001 51 TGRKRVVVS--TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRGS 127 (859)
Q Consensus 51 ~~~~~Vyva--t~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~-tG~llW~~~~~~~ 127 (859)
.+++.+||. |...-|.-+|.+.++.+=...+ ++....+ +....+...++++| .+...... +|++. +... +
T Consensus 104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iy-P~~~~~F~~lC~DG-sl~~v~Ld~~Gk~~-~~~t--~ 176 (342)
T PF06433_consen 104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIY-PSGNRGFSMLCGDG-SLLTVTLDADGKEA-QKST--K 176 (342)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEE-EEETTEEEEEETTS-CEEEEEETSTSSEE-EEEE--E
T ss_pred cCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEE-ecCCCceEEEecCC-ceEEEEECCCCCEe-Eeec--c
Confidence 356666664 6778899999999998744433 4333333 23345555678876 45555554 89997 4432 2
Q ss_pred cc--cCCcccccccccc-cCCC-eEEEEeCCEEEEEEcCCCcEEEEEeccC-------cceee--eeEEE-eecCCeEEE
Q 003001 128 KH--SKPLLLVPTNLKV-DKDS-LILVSSKGCLHAVSSIDGEILWTRDFAA-------ESVEV--QQVIQ-LDESDQIYV 193 (859)
Q Consensus 128 ~l--s~~~~~~~~~~~~-~~~~-~VvV~~~g~l~ald~~tG~~~W~~~~~~-------~~~~~--~~~v~-~~~~~~vyv 193 (859)
.. ..+..+.. + .. ..++ .+|+..+|.|+.+|.....+.|..+... ..+.| .|++- -...+.+|+
T Consensus 177 ~F~~~~dp~f~~-~-~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 177 VFDPDDDPLFEH-P-AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp ESSTTTS-B-S----EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccCCCCcccccc-c-ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22 01211111 0 11 1123 3444569999999988888766543321 12222 22221 136788998
Q ss_pred EEecCC------ceeEEEEEEcCCCceeeeeeeecccCccCceEEec---CcEEEEEECCCCeEEEEEeecCe
Q 003001 194 VGYAGS------SQFHAYQINAMNGELLNHETAAFSGGFVGDVALVS---SDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 194 v~~~g~------~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~---~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+-..|. ...+|.++|+++++++-...+..+.. .+-|. ...|++++...+.|.+.|..+|+
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~----Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPID----SIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEES----EEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccc----eEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 765542 24789999999999997776544421 12232 23677888777899999999988
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.91 E-value=33 Score=43.14 Aligned_cols=189 Identities=19% Similarity=0.114 Sum_probs=95.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEE------EcCCCcceeeeee-eecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRH------VLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~------~l~~~~~i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
+++.+.+++.++.|.-.|..+...-++. .+.....+..+.. +..+..++.++.++.|+.||..+|+.+.+...
T Consensus 494 dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~ 573 (793)
T PLN00181 494 DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE 573 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC
Confidence 4566888888999988886542111110 0111111111211 11233455466678999999999999988765
Q ss_pred cCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCcee
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~ 202 (859)
....+ .....-+ .++.+++. .||.+...|..+|+..-....... ...+.....++..++.|...+
T Consensus 574 H~~~V-~~l~~~p------~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~---v~~v~~~~~~g~~latgs~dg--- 640 (793)
T PLN00181 574 HEKRV-WSIDYSS------ADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN---ICCVQFPSESGRSLAFGSADH--- 640 (793)
T ss_pred CCCCE-EEEEEcC------CCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC---eEEEEEeCCCCCEEEEEeCCC---
Confidence 54322 1111111 13445553 489999999999887655443211 111111123344454444333
Q ss_pred EEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeec
Q 003001 203 HAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 203 ~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~s 255 (859)
.+..+|..+++.......+-...+. .+-+..+..+++... .+.+.+-++..
T Consensus 641 ~I~iwD~~~~~~~~~~~~~h~~~V~-~v~f~~~~~lvs~s~-D~~ikiWd~~~ 691 (793)
T PLN00181 641 KVYYYDLRNPKLPLCTMIGHSKTVS-YVRFVDSSTLVSSST-DNTLKLWDLSM 691 (793)
T ss_pred eEEEEECCCCCccceEecCCCCCEE-EEEEeCCCEEEEEEC-CCEEEEEeCCC
Confidence 5788888877532111111111111 122224455555543 46777777654
No 56
>PHA03098 kelch-like protein; Provisional
Probab=92.78 E-value=11 Score=45.03 Aligned_cols=189 Identities=12% Similarity=0.112 Sum_probs=96.0
Q ss_pred CCEEEEEeCC-------CEEEEEECCCCccceEEEcCCCccee--eeeeeecCEEEEEEcCC-----CeEEEEeCCCCcE
Q 003001 53 RKRVVVSTEE-------NVIASLDLRHGEIFWRHVLGINDVVD--GIDIALGKYVITLSSDG-----STLRAWNLPDGQM 118 (859)
Q Consensus 53 ~~~Vyvat~~-------g~l~ALd~~tG~ilWR~~l~~~~~i~--~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG~l 118 (859)
++.+|+.+.. +.+..+|+.+++ |+..-+.+..-. +. +..++.++++||.+ ..+..||+.++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~R~~~~~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-- 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVPELIYPRKNPGV-TVFNNRIYVIGGIYNSISLNTVESWKPGES-- 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECCCCCcccccceE-EEECCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence 6677776542 357899998874 865432221111 22 23567777777743 35788888766
Q ss_pred eEEEeccCccccCCcccccccccccCCCeEEEEeC--------CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCe
Q 003001 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (859)
Q Consensus 119 lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~--------g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~ 190 (859)
.|+...+-+. +..... ....++.+++.++ ..+..+|..++ .|+.-.+.+.- .....-...++.
T Consensus 369 ~W~~~~~lp~-----~r~~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~-r~~~~~~~~~~~ 439 (534)
T PHA03098 369 KWREEPPLIF-----PRYNPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPIS-HYGGCAIYHDGK 439 (534)
T ss_pred ceeeCCCcCc-----CCccce-EEEECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCcc-ccCceEEEECCE
Confidence 4875332211 111111 1122577777642 35788888775 58764432211 011111246788
Q ss_pred EEEEEecCCc-----eeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEEECC----CCeEEEEEeecCe
Q 003001 191 IYVVGYAGSS-----QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTT----RSILVTVSFKNRK 257 (859)
Q Consensus 191 vyvv~~~g~~-----~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~~----~~~l~v~~L~sg~ 257 (859)
+|++|..... --.+..+|+.++ .|+..-..+....+ .....++.++++.-.. ...+.+.+..+++
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 9988743211 113788898776 47663222222222 1222244444433111 1345666666554
No 57
>PHA02790 Kelch-like protein; Provisional
Probab=92.65 E-value=12 Score=44.10 Aligned_cols=169 Identities=11% Similarity=0.066 Sum_probs=90.5
Q ss_pred CCCEEEEEeCC------CEEEEEECCCCccceEEEcCCCcce-eeeeeeecCEEEEEEcCC--CeEEEEeCCCCcEeEEE
Q 003001 52 GRKRVVVSTEE------NVIASLDLRHGEIFWRHVLGINDVV-DGIDIALGKYVITLSSDG--STLRAWNLPDGQMVWES 122 (859)
Q Consensus 52 ~~~~Vyvat~~------g~l~ALd~~tG~ilWR~~l~~~~~i-~~l~~~~~~~~V~Vs~~g--~~v~Ald~~tG~llW~~ 122 (859)
.++.||+.+.. ..+...|+++++ |+..-+.+..- ....+..++.++++||.+ ..+..||+.++ .|+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~--W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n--~W~~ 345 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNN--WIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA--AWVN 345 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCE--EEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC--eEEE
Confidence 36778887653 357788999875 98754333111 111134577777777642 45888987655 5875
Q ss_pred eccCccccCCcccccccccccCCCeEEEEeC-----CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEec
Q 003001 123 FLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-----GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYA 197 (859)
Q Consensus 123 ~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~-----g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~ 197 (859)
-.+-+. + .... ..+.-++.++|.++ ..+.++|..++ .|+...+-+.-.....+ +.-++.+|++|
T Consensus 346 ~~~l~~---~--r~~~-~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~-~~~~~~IYv~G-- 414 (480)
T PHA02790 346 MPSLLK---P--RCNP-AVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCA-LVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCC---C--Cccc-EEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceE-EEECCEEEEEC--
Confidence 322111 1 1110 12222678888632 34667887654 69874432211011111 24688999986
Q ss_pred CCceeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEE
Q 003001 198 GSSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTL 241 (859)
Q Consensus 198 g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~ 241 (859)
| .+..+|+.++ .|+.--..+....+ .+.++++.++++.
T Consensus 415 G----~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 415 R----NAEFYCESSN--TWTLIDDPIYPRDNPELIIVDNKLLLIG 453 (480)
T ss_pred C----ceEEecCCCC--cEeEcCCCCCCccccEEEEECCEEEEEC
Confidence 3 2567888765 68864333332222 2333355555544
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.46 E-value=16 Score=38.47 Aligned_cols=182 Identities=12% Similarity=0.110 Sum_probs=101.5
Q ss_pred ceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEe
Q 003001 40 KVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV 119 (859)
Q Consensus 40 ~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~ll 119 (859)
.+....|. .+++...+...+-+|.--||..|..+=.+.=...+ +.-++...++--+.-+|.+..++.||.+||+++
T Consensus 19 aV~avryN---~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E-VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 19 AVRAVRYN---VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE-VLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ceEEEEEc---cCCCEEEEcCCCceEEeecccccceeeeecCCCce-eeeccccccccccccCCCCceEEEEEcccCeee
Confidence 33344444 35777777788889999999999887665432221 111111233334443445678999999999999
Q ss_pred EEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEE---------eecC
Q 003001 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ---------LDES 188 (859)
Q Consensus 120 W~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~---------~~~~ 188 (859)
-+++...... ..+. ...+..|++. .|..+.+.|-.+-.. +|.|+.+ -.++
T Consensus 95 Rr~rgH~aqV----NtV~----fNeesSVv~SgsfD~s~r~wDCRS~s~-----------ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 95 RRFRGHLAQV----NTVR----FNEESSVVASGSFDSSVRLWDCRSRSF-----------EPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred eeccccccee----eEEE----ecCcceEEEeccccceeEEEEcccCCC-----------CccchhhhhcCceeEEEecc
Confidence 9888776543 1211 1212334443 277777766544321 1222211 1244
Q ss_pred CeEEEEEecCCceeEEEEEEcCCCceeeeeeeecc-----cCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS-----GGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 189 ~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~-----~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+...+.+| .+-.+|+..|+..-.+- +.| ....+.|.+++ |+| +.++.+|-.+|+
T Consensus 156 heIvaGS~DG----tvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~-----~l~---stlrLlDk~tGk 216 (307)
T KOG0316|consen 156 HEIVAGSVDG----TVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLAS-----SLD---STLRLLDKETGK 216 (307)
T ss_pred cEEEeeccCC----cEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEe-----ecc---ceeeecccchhH
Confidence 4555545555 47778888888775551 111 11112333322 343 568888888877
No 59
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.88 E-value=10 Score=40.84 Aligned_cols=197 Identities=13% Similarity=0.095 Sum_probs=108.4
Q ss_pred eccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcCCCeEEEEeCCCCc-EeEEEeccC
Q 003001 49 QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQ-MVWESFLRG 126 (859)
Q Consensus 49 ~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~tG~-llW~~~~~~ 126 (859)
|+.++..=|.+...+.+.-|||+||++. ++.|+....-.+... ..+..+++ ..+.-+.-+|.++++ ..|.....-
T Consensus 69 papdG~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f~lp~~~ 145 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRFPLPLEH 145 (353)
T ss_pred cCCCCceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEeeccccc
Confidence 3343335677788899999999999864 566655421112200 12333444 323357888887765 455555332
Q ss_pred ccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcE-EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 127 SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI-LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
+.. .+... ..+..+.+... ..|.--+||..++.+ .|....... +..+. +..++.||+.+++|.+ +
T Consensus 146 a~~--nlet~----vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~g---pyGi~-atpdGsvwyaslagna---i 212 (353)
T COG4257 146 ADA--NLETA----VFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGG---PYGIC-ATPDGSVWYASLAGNA---I 212 (353)
T ss_pred CCC--cccce----eeCCCccEEEeeccccceecCcccCceeeeccCCCCC---CcceE-ECCCCcEEEEeccccc---e
Confidence 211 11111 33445666554 355555888888864 465543221 33333 4678899999999874 7
Q ss_pred EEEEcCCCceeeeeeeecccCccC-c-eEEe-cCcEEEEEECCCCeEEEEEeecCeeeEEEEeec
Q 003001 205 YQINAMNGELLNHETAAFSGGFVG-D-VALV-SSDTLVTLDTTRSILVTVSFKNRKIAFQETHLS 266 (859)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~~~~s~-~-~~~v-~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~l~ 266 (859)
.-+|+.+|.. ..+..|..+.. . .+-+ ..+-+...+-.+++++..+-.+.+ ..+-+|-
T Consensus 213 aridp~~~~a---ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLP 272 (353)
T COG4257 213 ARIDPFAGHA---EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLP 272 (353)
T ss_pred EEcccccCCc---ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCC
Confidence 8899999932 22334444222 1 1111 122333344455677777765554 6666663
No 60
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.82 E-value=13 Score=42.52 Aligned_cols=198 Identities=16% Similarity=0.167 Sum_probs=106.8
Q ss_pred CceeeeeeeeeccCCCEEEEEeCCCE--EEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcCCCeEEEEeCCC
Q 003001 39 GKVKHAVFHTQKTGRKRVVVSTEENV--IASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPD 115 (859)
Q Consensus 39 G~~~~~~f~~~~~~~~~Vyvat~~g~--l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~t 115 (859)
|....-.||. ....+.|++-+|. ++.+|-++-..+=...|..- +|..... +.|...++.++....++.||..+
T Consensus 214 ~~I~sv~FHp---~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f-Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 214 GGITSVQFHP---TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF-PIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CCceEEEecC---CCceEEEecCCCcEEEEEecCccChhheeeeeccC-ccceeeecCCCceEEEecccceEEEEeeccc
Confidence 3444456773 3446888887774 57777666655544444332 2322211 23554666677677899999998
Q ss_pred CcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEE
Q 003001 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYV 193 (859)
Q Consensus 116 G~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyv 193 (859)
+++.=-.+..+-. .+..... .+.-++..+++ ..|.++.|.+.||+..=+........ .+..+..+..+++
T Consensus 290 ak~~k~~~~~g~e-~~~~e~F----eVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~---~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 290 AKVTKLKPPYGVE-EKSMERF----EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS---DFTFSSDSKELLA 361 (514)
T ss_pred cccccccCCCCcc-cchhhee----EecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe---eEEEecCCcEEEE
Confidence 8765222211110 0111111 11223434443 48999999999998877776654221 1222234566776
Q ss_pred EEecCCceeEEEEEEcCCCceeeeeeeecccCccCc--eEEecCcEEEEEECCCCeEEEEEeec
Q 003001 194 VGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGD--VALVSSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 194 v~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~--~~~v~~~~lv~~d~~~~~l~v~~L~s 255 (859)
.+..| .|+.+|+..-..+.... -...+.+. |.-..+.+++|.. +.|-.-+.+.++
T Consensus 362 ~~~~G----eV~v~nl~~~~~~~rf~--D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s 418 (514)
T KOG2055|consen 362 SGGTG----EVYVWNLRQNSCLHRFV--DDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNS 418 (514)
T ss_pred EcCCc----eEEEEecCCcceEEEEe--ecCccceeeeeecCCCceEEecc-CcceEEEeccch
Confidence 66555 58888887665443321 12334442 2222344666664 456665555544
No 61
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.77 E-value=24 Score=39.07 Aligned_cols=136 Identities=8% Similarity=0.013 Sum_probs=68.2
Q ss_pred CCEEEEEeCC------CEEEEEECCCCcc--ceEEEcCCCccee-eeeeeecCEEEEEEcC-----CCeEEEEeCCCCcE
Q 003001 53 RKRVVVSTEE------NVIASLDLRHGEI--FWRHVLGINDVVD-GIDIALGKYVITLSSD-----GSTLRAWNLPDGQM 118 (859)
Q Consensus 53 ~~~Vyvat~~------g~l~ALd~~tG~i--lWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~-----g~~v~Ald~~tG~l 118 (859)
++.||+.... +.+..+|+.+.+- .|+..-+.+.... ......++.++++++. -..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~-- 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ-- 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC--
Confidence 6778876542 4688888887652 4554322221111 1112346666666653 136889998765
Q ss_pred eEEEeccCccccCCcccccccccccCCCeEEEEeC------CEEEEEEcCCCcEEEEEeccCcc-eeeee----EEEeec
Q 003001 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK------GCLHAVSSIDGEILWTRDFAAES-VEVQQ----VIQLDE 187 (859)
Q Consensus 119 lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~------g~l~ald~~tG~~~W~~~~~~~~-~~~~~----~v~~~~ 187 (859)
.|+.--.-+........ .+..++.++|+++ ..+.++|..+. .|+.-.+.+. ..+.. ..-...
T Consensus 150 ~W~~~~~~p~~~r~~~~-----~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~p~~~~~~~~~~~~ 222 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPV-----CVKLQNELYVFGGGSNIAYTDGYKYSPKKN--QWQKVADPTTDSEPISLLGAASIKIN 222 (323)
T ss_pred CeeECCCCCCCCCCcce-----EEEECCEEEEEcCCCCccccceEEEecCCC--eeEECCCCCCCCCceeccceeEEEEC
Confidence 48754321110000001 1122567888642 13568888775 5876432110 01111 111234
Q ss_pred CCeEEEEEec
Q 003001 188 SDQIYVVGYA 197 (859)
Q Consensus 188 ~~~vyvv~~~ 197 (859)
++.+|++|-.
T Consensus 223 ~~~iyv~GG~ 232 (323)
T TIGR03548 223 ESLLLCIGGF 232 (323)
T ss_pred CCEEEEECCc
Confidence 6889987643
No 62
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=91.35 E-value=17 Score=44.43 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=103.2
Q ss_pred eccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 49 QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 49 ~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
|+..=++|.+++.+|.+.-+|-++|+++...+--. ..|..+..+-.=|+|.||..+|+|.-+|...|+.+-+++..-+.
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~ 246 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF-SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGR 246 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccc-cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccc
Confidence 66667889999999999999999999998875322 22332211223368888888889999999999999999986332
Q ss_pred ccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccC-cceeeeeEEEeecCCeEEEEEecCCceeEEE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAA-ESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~-~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
. ..+.+.. + +..+++. ..|.+.-.|++.-+..|...... +...-... ..+..|.+ +..+..++++.
T Consensus 247 V-tslSFrt-----D-G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f---l~~epVl~-ta~~DnSlk~~ 315 (910)
T KOG1539|consen 247 V-TSLSFRT-----D-GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF---LPGEPVLV-TAGADNSLKVW 315 (910)
T ss_pred e-eEEEecc-----C-CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee---cCCCceEe-eccCCCceeEE
Confidence 2 2233332 2 2344553 47889999999988999887543 22211222 13334443 32333568899
Q ss_pred EEEcCCCcee
Q 003001 206 QINAMNGELL 215 (859)
Q Consensus 206 ald~~tG~~~ 215 (859)
.+|..+|.++
T Consensus 316 vfD~~dg~pR 325 (910)
T KOG1539|consen 316 VFDSGDGVPR 325 (910)
T ss_pred EeeCCCCcch
Confidence 9998888654
No 63
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.25 E-value=2.5 Score=49.85 Aligned_cols=115 Identities=10% Similarity=0.170 Sum_probs=61.0
Q ss_pred ecCEEEEEEc----CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEE
Q 003001 94 LGKYVITLSS----DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWT 169 (859)
Q Consensus 94 ~~~~~V~Vs~----~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~ 169 (859)
..+++.++.. .....+++|. +|.++|......... ..... -.+|.+++..+..+..+|. .|++.|+
T Consensus 112 ~~~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~-~~~~~-------l~nG~ll~~~~~~~~e~D~-~G~v~~~ 181 (477)
T PF05935_consen 112 MEDGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSD-NSFKQ-------LPNGNLLIGSGNRLYEIDL-LGKVIWE 181 (477)
T ss_dssp -TT-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT---SSEEE--------TTS-EEEEEBTEEEEE-T-T--EEEE
T ss_pred cCCcEEEEeCCCCCCCceEEEECC-CccEEEEEccCcccc-ceeeE-------cCCCCEEEecCCceEEEcC-CCCEEEe
Confidence 4567777765 4568999996 799999999876532 11112 2267888877899999996 6999999
Q ss_pred EeccCcceeee-eEEEeecCCeEEEEEec-------CC---ceeEEEEEEcCCCceeeeeee
Q 003001 170 RDFAAESVEVQ-QVIQLDESDQIYVVGYA-------GS---SQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 170 ~~~~~~~~~~~-~~v~~~~~~~vyvv~~~-------g~---~~~~v~ald~~tG~~~w~~~v 220 (859)
++.+......- -+.. ..+|.+.+++.. .+ ..=.++.+| .+|+++|+...
T Consensus 182 ~~l~~~~~~~HHD~~~-l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~ 241 (477)
T PF05935_consen 182 YDLPGGYYDFHHDIDE-LPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDF 241 (477)
T ss_dssp EE--TTEE-B-S-EEE--TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEG
T ss_pred eecCCcccccccccEE-CCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEeh
Confidence 99886431000 0111 133344433431 10 011478889 89999999864
No 64
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.24 E-value=43 Score=40.79 Aligned_cols=97 Identities=12% Similarity=0.016 Sum_probs=56.5
Q ss_pred CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEE
Q 003001 153 KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL 232 (859)
Q Consensus 153 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~ 232 (859)
||+|...|..+|-=.=++.......+..+. ...+..++-.+++| .|-|.|+..++-....+ +|...+-.|+-
T Consensus 371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f--~~~g~~llssSLDG----tVRAwDlkRYrNfRTft--~P~p~Qfscva 442 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQF--TARGNVLLSSSLDG----TVRAWDLKRYRNFRTFT--SPEPIQFSCVA 442 (893)
T ss_pred CCcEEEEeccCceEEEEeccCCCceEEEEE--EecCCEEEEeecCC----eEEeeeecccceeeeec--CCCceeeeEEE
Confidence 444444444444433333333322222233 24667777778888 49999999998877775 45545556777
Q ss_pred ec-CcEEEEE-ECCCCeEEEEEeecCe
Q 003001 233 VS-SDTLVTL-DTTRSILVTVSFKNRK 257 (859)
Q Consensus 233 v~-~~~lv~~-d~~~~~l~v~~L~sg~ 257 (859)
|+ .+.+||+ +.+.=.+++-.+++|+
T Consensus 443 vD~sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 443 VDPSGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred EcCCCCEEEeeccceEEEEEEEeecCe
Confidence 64 2445554 3332257777888887
No 65
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=91.22 E-value=4.3 Score=44.81 Aligned_cols=150 Identities=14% Similarity=0.243 Sum_probs=82.3
Q ss_pred CCEEEEEECCCCccceEEEcCCCc-----c---------------------eeeeeeeecCEEEEEEcC-CCeEEEEeCC
Q 003001 62 ENVIASLDLRHGEIFWRHVLGIND-----V---------------------VDGIDIALGKYVITLSSD-GSTLRAWNLP 114 (859)
Q Consensus 62 ~g~l~ALd~~tG~ilWR~~l~~~~-----~---------------------i~~l~~~~~~~~V~Vs~~-g~~v~Ald~~ 114 (859)
++.+.=+|++||+++|+-....-. . +..+. ...++-++||.. -..|+.+|+.
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~-~~~~G~yLiS~R~~~~i~~I~~~ 173 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVD-KDDDGDYLISSRNTSTIYKIDPS 173 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeee-ecCCccEEEEecccCEEEEEECC
Confidence 467888999999999998652210 0 00110 123334455653 4689999999
Q ss_pred CCcEeEEEecc-Ccc-------c--cCCcccccccccccCCCeEEEEe------------CCEEEEEEcCCCcEEEEEec
Q 003001 115 DGQMVWESFLR-GSK-------H--SKPLLLVPTNLKVDKDSLILVSS------------KGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 115 tG~llW~~~~~-~~~-------l--s~~~~~~~~~~~~~~~~~VvV~~------------~g~l~ald~~tG~~~W~~~~ 172 (859)
||+++|+.... ... + +-++...+. -..++.+.++. .+.+..||..+....|..+.
T Consensus 174 tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~---~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~ 250 (299)
T PF14269_consen 174 TGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNE---SNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREY 250 (299)
T ss_pred CCcEEEEeCCCCCCcccccCCcEeeccCCEEecc---CCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEe
Confidence 99999998655 111 1 111222210 01234444443 36899999998776665544
Q ss_pred c-Ccc--eeeeeE-EEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 173 A-AES--VEVQQV-IQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 173 ~-~~~--~~~~~~-v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
. .+. .+..+- +....++.+++ +.. ...++..+++ +|+++|+..
T Consensus 251 ~~~~~~~~s~~~G~~Q~L~nGn~li-~~g--~~g~~~E~~~-~G~vv~~~~ 297 (299)
T PF14269_consen 251 SDHPDGFYSPSQGSAQRLPNGNVLI-GWG--NNGRISEFTP-DGEVVWEAQ 297 (299)
T ss_pred ecCCCcccccCCCcceECCCCCEEE-ecC--CCceEEEECC-CCCEEEEEE
Confidence 3 111 111110 00113445553 322 1235777774 899999985
No 66
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.20 E-value=23 Score=41.41 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=84.5
Q ss_pred CCCEEEEEeCCCEEEEEECCC-CccceEEEcCCCcceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRH-GEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~t-G~ilWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++..+..++.++.|...|.++ |..+=. ..+-...+..+... .+ ..++-++.++.+|.||..+|+..=.........
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~-l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKT-LKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI 291 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEE-ecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCce
Confidence 455788888999999999844 443322 22222222222112 34 344435567899999999999987777766543
Q ss_pred cCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEE--EEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEIL--WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~--W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
..+ ....++..++ . .||.+...|..+|+.+ =+............+..+..+..++....++ .+.
T Consensus 292 ----s~~----~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~----~~~ 359 (456)
T KOG0266|consen 292 ----SGL----AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR----TLK 359 (456)
T ss_pred ----EEE----EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC----eEE
Confidence 111 1122455555 3 4999999999999944 1111111110012222122333333322222 366
Q ss_pred EEEcCCCceeeeee
Q 003001 206 QINAMNGELLNHET 219 (859)
Q Consensus 206 ald~~tG~~~w~~~ 219 (859)
-+|..+|...-+..
T Consensus 360 ~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYT 373 (456)
T ss_pred EEEccCCcceeeec
Confidence 66888888776664
No 67
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.09 E-value=28 Score=38.47 Aligned_cols=146 Identities=10% Similarity=0.071 Sum_probs=75.7
Q ss_pred EEEEEECCCCccceEEEcCCCccee-eeeeeecCEEEEEEcCC-----CeEEEEeCCCCcE--eEEEeccCccccCCccc
Q 003001 64 VIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQM--VWESFLRGSKHSKPLLL 135 (859)
Q Consensus 64 ~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG~l--lW~~~~~~~~ls~~~~~ 135 (859)
.++.|+..+.+..|+..-+-+.... +..+..++.+++++|.. ..+..+|..+.+- .|+....-+. +.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~-----~~ 114 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPF-----TF 114 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCc-----Cc
Confidence 4666753445567987543332111 22134577777777642 3688888877652 4543211111 11
Q ss_pred ccccccccCCCeEEEEeC-------CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC-ceeEEEEE
Q 003001 136 VPTNLKVDKDSLILVSSK-------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS-SQFHAYQI 207 (859)
Q Consensus 136 ~~~~~~~~~~~~VvV~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~-~~~~v~al 207 (859)
.... ....++.++|.++ ..+.++|..+. .|+.-.+-+........-...++.+|++|-..+ ....+.++
T Consensus 115 ~~~~-~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~y 191 (323)
T TIGR03548 115 ENGS-ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKY 191 (323)
T ss_pred cCce-EEEECCEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEE
Confidence 1111 1122577888643 36888988765 488643222110011111246789999875421 11246788
Q ss_pred EcCCCceeeeee
Q 003001 208 NAMNGELLNHET 219 (859)
Q Consensus 208 d~~tG~~~w~~~ 219 (859)
|+.+. .|+..
T Consensus 192 d~~~~--~W~~~ 201 (323)
T TIGR03548 192 SPKKN--QWQKV 201 (323)
T ss_pred ecCCC--eeEEC
Confidence 98875 48763
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.81 E-value=24 Score=37.22 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=76.3
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEec
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~ 172 (859)
|+..++ .|.+..|+.||+..|.++=++...+-.. .++.. ..|+.-+.. .|..++..|..+|++.=+++.
T Consensus 29 GnY~lt-cGsdrtvrLWNp~rg~liktYsghG~EV-lD~~~-------s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 29 GNYCLT-CGSDRTVRLWNPLRGALIKTYSGHGHEV-LDAAL-------SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred CCEEEE-cCCCceEEeecccccceeeeecCCCcee-eeccc-------cccccccccCCCCceEEEEEcccCeeeeeccc
Confidence 455555 4556799999999999999998776543 12111 113444443 366789999999998766655
Q ss_pred cCcceeeeeEEEeecCCeEEE-EEecCCceeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEEECCCCeEEE
Q 003001 173 AAESVEVQQVIQLDESDQIYV-VGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTTRSILVT 250 (859)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~vyv-v~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~~~~~l~v 250 (859)
........+. ..+..|.+ .+++. .+-++|-.+-..---+.+.. ...+ ..+-+.+..++.... .|.+..
T Consensus 100 H~aqVNtV~f---NeesSVv~SgsfD~----s~r~wDCRS~s~ePiQilde--a~D~V~Si~v~~heIvaGS~-DGtvRt 169 (307)
T KOG0316|consen 100 HLAQVNTVRF---NEESSVVASGSFDS----SVRLWDCRSRSFEPIQILDE--AKDGVSSIDVAEHEIVAGSV-DGTVRT 169 (307)
T ss_pred ccceeeEEEe---cCcceEEEeccccc----eeEEEEcccCCCCccchhhh--hcCceeEEEecccEEEeecc-CCcEEE
Confidence 4332211111 12222222 22222 35555543322110000000 0001 112234455666654 489999
Q ss_pred EEeecCe
Q 003001 251 VSFKNRK 257 (859)
Q Consensus 251 ~~L~sg~ 257 (859)
.++..|.
T Consensus 170 ydiR~G~ 176 (307)
T KOG0316|consen 170 YDIRKGT 176 (307)
T ss_pred EEeecce
Confidence 9999887
No 69
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.79 E-value=28 Score=39.52 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=42.2
Q ss_pred CCEEEEEeC--CCEEEEEECCCCccceEEEcCCCc--ceeeeeeeecCEEEEEEcCC-----------CeEEEEeCCCCc
Q 003001 53 RKRVVVSTE--ENVIASLDLRHGEIFWRHVLGIND--VVDGIDIALGKYVITLSSDG-----------STLRAWNLPDGQ 117 (859)
Q Consensus 53 ~~~Vyvat~--~g~l~ALd~~tG~ilWR~~l~~~~--~i~~l~~~~~~~~V~Vs~~g-----------~~v~Ald~~tG~ 117 (859)
++.||+... .+.+..+|..+.+-.|+..-+.+. ......+..++.++++||.+ ..+..||+.+.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n- 116 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN- 116 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC-
Confidence 678888644 366889998765667986443221 11111134567677777642 24788888764
Q ss_pred EeEEEec
Q 003001 118 MVWESFL 124 (859)
Q Consensus 118 llW~~~~ 124 (859)
.|+.-.
T Consensus 117 -~W~~~~ 122 (376)
T PRK14131 117 -SWQKLD 122 (376)
T ss_pred -EEEeCC
Confidence 587643
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.05 E-value=28 Score=36.70 Aligned_cols=142 Identities=14% Similarity=0.162 Sum_probs=76.1
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++.+|+.+ ..+.|..+|+++|+.. ...++. ..++.....++.++++..+ .++.+|..+|+..--........
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~---~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~-- 83 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG---PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGV-- 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSS---EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEETTCS--
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCC---CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCc--
Confidence 67788777 5789999999888652 223333 2234222234666666654 45666999996655444421110
Q ss_pred CcccccccccccCCCeEEEEe--C--------CEEEEEEcCCCcEEEEEe-ccCcceeeeeEEEeecCCeEEEEEecCCc
Q 003001 132 PLLLVPTNLKVDKDSLILVSS--K--------GCLHAVSSIDGEILWTRD-FAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~~--~--------g~l~ald~~tG~~~W~~~-~~~~~~~~~~~v~~~~~~~vyvv~~~g~~ 200 (859)
....+-...++.+|.+++.. . |.+++++.. |+...-.. ... +-.+..+..+..+|+.....+
T Consensus 84 -~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~----pNGi~~s~dg~~lyv~ds~~~- 156 (246)
T PF08450_consen 84 -PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF----PNGIAFSPDGKTLYVADSFNG- 156 (246)
T ss_dssp -CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS----EEEEEEETTSSEEEEEETTTT-
T ss_pred -ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc----ccceEECCcchheeecccccc-
Confidence 01122122445567788852 1 789999988 77543332 221 222332345567776544433
Q ss_pred eeEEEEEEcC
Q 003001 201 QFHAYQINAM 210 (859)
Q Consensus 201 ~~~v~ald~~ 210 (859)
++..++..
T Consensus 157 --~i~~~~~~ 164 (246)
T PF08450_consen 157 --RIWRFDLD 164 (246)
T ss_dssp --EEEEEEEE
T ss_pred --eeEEEecc
Confidence 46666654
No 71
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=89.87 E-value=17 Score=47.13 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=85.9
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEE------EcCCCc-------ceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCc
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRH------VLGIND-------VVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQ 117 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~------~l~~~~-------~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~ 117 (859)
++.+|++. .++.|.-+|+.+|.+.--. ...... ...++....+++.++|+ ..++.|+.||..+|.
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 57788885 4688999999888642100 000000 00123222233445543 445799999999988
Q ss_pred EeEEEeccCc---c---c-------cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCc-------
Q 003001 118 MVWESFLRGS---K---H-------SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAE------- 175 (859)
Q Consensus 118 llW~~~~~~~---~---l-------s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~------- 175 (859)
..|-...... . . .......|.+...+.++.++|. .+++|..+|.++|.+.........
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 7654321100 0 0 0000011112234446778885 489999999999987755432210
Q ss_pred ---c-eeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCcee
Q 003001 176 ---S-VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (859)
Q Consensus 176 ---~-~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~ 215 (859)
. ..|..+. ...++.+|+....++ .+..+|+.+|+..
T Consensus 854 ~~a~l~~P~GIa-vd~dG~lyVaDt~Nn---~Irvid~~~~~~~ 893 (1057)
T PLN02919 854 LKAQLSEPAGLA-LGENGRLFVADTNNS---LIRYLDLNKGEAA 893 (1057)
T ss_pred cccccCCceEEE-EeCCCCEEEEECCCC---EEEEEECCCCccc
Confidence 0 1233343 234667887654433 5777899888764
No 72
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=89.73 E-value=30 Score=36.67 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=85.1
Q ss_pred CEEEEEEcCCCeEEEEeCC------CCcEeEEEeccCccccCCcccccccc-ccc-CCCeEEE-EeCCEEEEEEcCCCcE
Q 003001 96 KYVITLSSDGSTLRAWNLP------DGQMVWESFLRGSKHSKPLLLVPTNL-KVD-KDSLILV-SSKGCLHAVSSIDGEI 166 (859)
Q Consensus 96 ~~~V~Vs~~g~~v~Ald~~------tG~llW~~~~~~~~ls~~~~~~~~~~-~~~-~~~~VvV-~~~g~l~ald~~tG~~ 166 (859)
++.+..++ +|.|++|.=+ -=+.+|+...+-..- ..++...+. -.+ ..+.++. .+|+.++..|.++|+.
T Consensus 72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~--~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i 148 (325)
T KOG0649|consen 72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVD--AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI 148 (325)
T ss_pred hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccC--cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE
Confidence 34444344 4699999532 347789877653321 111111010 111 1344444 4699999999999999
Q ss_pred EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeec-c---c-CccC--ceEEecCcEEE
Q 003001 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-S---G-GFVG--DVALVSSDTLV 239 (859)
Q Consensus 167 ~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~-~---~-~~s~--~~~~v~~~~lv 239 (859)
.=+++....-+ -.++.-...+.++-.+-+| .+-..|.+|++-+.....-- + + .... .++-++.+-++
T Consensus 149 ~r~~rGHtDYv--H~vv~R~~~~qilsG~EDG----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlv 222 (325)
T KOG0649|consen 149 QREYRGHTDYV--HSVVGRNANGQILSGAEDG----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLV 222 (325)
T ss_pred EEEEcCCccee--eeeeecccCcceeecCCCc----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEE
Confidence 88887654322 1122113456666544444 47788999988664332110 1 1 1111 24444566788
Q ss_pred EEECCCCeEEEEEeecCeeeEEEEee
Q 003001 240 TLDTTRSILVTVSFKNRKIAFQETHL 265 (859)
Q Consensus 240 ~~d~~~~~l~v~~L~sg~~~~~~~~l 265 (859)
|.- ...|..-.|.+-. ....+|+
T Consensus 223 CGg--Gp~lslwhLrsse-~t~vfpi 245 (325)
T KOG0649|consen 223 CGG--GPKLSLWHLRSSE-STCVFPI 245 (325)
T ss_pred ecC--CCceeEEeccCCC-ceEEEec
Confidence 873 3456666666543 3555565
No 73
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.53 E-value=16 Score=41.04 Aligned_cols=154 Identities=10% Similarity=0.164 Sum_probs=94.1
Q ss_pred ccCCCEEEEEeCCCEEEEEECCCCc-----cceEEEcCCCcceeeeee-eecCEEEEEEcCC--CeEEEEeCCCCcEeEE
Q 003001 50 KTGRKRVVVSTEENVIASLDLRHGE-----IFWRHVLGINDVVDGIDI-ALGKYVITLSSDG--STLRAWNLPDGQMVWE 121 (859)
Q Consensus 50 ~~~~~~Vyvat~~g~l~ALd~~tG~-----ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g--~~v~Ald~~tG~llW~ 121 (859)
...++.|.+...+|.+...+-++|. .+|-+..+.- ..++- .....+|..||.- ..+--||.+.++.+|+
T Consensus 112 ~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~---~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~ 188 (412)
T KOG3881|consen 112 KLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGL---YDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS 188 (412)
T ss_pred hhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCce---eeeccCCCCCceEecCchhcccceeeeecccceeeee
Confidence 3457889999999999888888544 5555543221 11111 1233455545544 5799999999999999
Q ss_pred EeccCc-cc-------cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCc-EEEEEeccCcceeeeeEEEeecCCe
Q 003001 122 SFLRGS-KH-------SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDESDQ 190 (859)
Q Consensus 122 ~~~~~~-~l-------s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~v~~~~~~~ 190 (859)
..-... .+ -.++.+++ ..+...|+. .-+.|+-+|...|+ ++=+++.....++-..+ ...++.
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~-----g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l--~p~gn~ 261 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLE-----GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL--TPSGNF 261 (412)
T ss_pred ccCCCCccccceeeeeeccceecC-----CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee--cCCCcE
Confidence 764322 12 11222222 112455553 37899999999885 56666655433322222 246777
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeee
Q 003001 191 IYVVGYAGSSQFHAYQINAMNGELLNH 217 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~tG~~~w~ 217 (859)
||+....| .+..+|..+|+..-.
T Consensus 262 Iy~gn~~g----~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 262 IYTGNTKG----QLAKFDLRGGKLLGC 284 (412)
T ss_pred EEEecccc----hhheecccCceeecc
Confidence 88754444 599999999987754
No 74
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.40 E-value=6.4 Score=42.40 Aligned_cols=114 Identities=11% Similarity=-0.067 Sum_probs=72.4
Q ss_pred cCCCEEEEEeC-CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 51 TGRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 51 ~~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
.-++++|..|= +|+....|++|-+++=+...+.++ =|+ ..++..+++|....+++-+|+++-++.=+.++....
T Consensus 97 ~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG--WGL--t~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g- 171 (264)
T PF05096_consen 97 ILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG--WGL--TSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG- 171 (264)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS----EE--EECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT-
T ss_pred EECCEEEEEEecCCeEEEEccccceEEEEEecCCcc--eEE--EcCCCEEEEECCccceEEECCcccceEEEEEEEECC-
Confidence 34788999995 689999999999888777776541 144 344555666765579999999998887776664321
Q ss_pred cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEec
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~ 172 (859)
.++...+-....+|.+++- ....+.++|++||++.=..+.
T Consensus 172 ---~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 172 ---RPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp ---EE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred ---EECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 1111111122236888884 488999999999998765554
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.14 E-value=17 Score=41.80 Aligned_cols=151 Identities=16% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCEEEE-EeCCCEEEEEECCCCccceEEEcCCC-cceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc-
Q 003001 52 GRKRVVV-STEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS- 127 (859)
Q Consensus 52 ~~~~Vyv-at~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~- 127 (859)
.++.+++ ++++.++--.|+.++.+ ...+... +-+...... .++.+|+-|+.++.||.||..+-. -|...+.-+
T Consensus 121 ~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~ 197 (487)
T KOG0310|consen 121 QDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGC 197 (487)
T ss_pred cCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCC
Confidence 4566555 45566666667766663 5455443 222211112 333355546778999999998764 565555422
Q ss_pred cccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEec-cCcceeeeeEEEeecCCeEEEEEecCCceeEEE
Q 003001 128 KHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF-AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~-~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
.. .....+| .+..++. ++..+...|..+|.++=.... -.... .-+.....+..++..++++ +|-
T Consensus 198 pV-e~vl~lp-------sgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtV--TcL~l~s~~~rLlS~sLD~----~VK 263 (487)
T KOG0310|consen 198 PV-ESVLALP-------SGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTV--TCLRLASDSTRLLSGSLDR----HVK 263 (487)
T ss_pred ce-eeEEEcC-------CCCEEEEcCCCeEEEEEecCCceehhhhhcccceE--EEEEeecCCceEeeccccc----ceE
Confidence 11 1112222 3445554 455666667665554433222 11111 1122223556777777777 477
Q ss_pred EEEcCCCceeeeee
Q 003001 206 QINAMNGELLNHET 219 (859)
Q Consensus 206 ald~~tG~~~w~~~ 219 (859)
++|..+=+++...+
T Consensus 264 Vfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 264 VFDTTNYKVVHSWK 277 (487)
T ss_pred EEEccceEEEEeee
Confidence 77866666664443
No 76
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=89.05 E-value=5.9 Score=43.74 Aligned_cols=115 Identities=16% Similarity=0.229 Sum_probs=66.6
Q ss_pred CCEEEEEeC-CCEEEEEECCCCccceEEEcCCCc-------cee---eeeee---ecCEEEEE-Ec----------CCCe
Q 003001 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIND-------VVD---GIDIA---LGKYVITL-SS----------DGST 107 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~-------~i~---~l~~~---~~~~~V~V-s~----------~g~~ 107 (859)
++.++++.+ -..|+.+|++||+++|+.-=+... ... -.+.. .+++.+.+ -. ..+.
T Consensus 154 ~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~ 233 (299)
T PF14269_consen 154 DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGL 233 (299)
T ss_pred CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCce
Confidence 445666665 489999999999999997422010 010 00001 12333332 11 2368
Q ss_pred EEEEeCCCCcEeEEEecc---CccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEec
Q 003001 108 LRAWNLPDGQMVWESFLR---GSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 108 v~Ald~~tG~llW~~~~~---~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~ 172 (859)
+..+|..+.+..|..... .+..+ ...+...... .+.++|. ..|++.=++ .+|+++|++..
T Consensus 234 v~~ld~~~~~~~~~~~~~~~~~~~~s---~~~G~~Q~L~-nGn~li~~g~~g~~~E~~-~~G~vv~~~~f 298 (299)
T PF14269_consen 234 VLELDPETMTVTLVREYSDHPDGFYS---PSQGSAQRLP-NGNVLIGWGNNGRISEFT-PDGEVVWEAQF 298 (299)
T ss_pred EEEEECCCCEEEEEEEeecCCCcccc---cCCCcceECC-CCCEEEecCCCceEEEEC-CCCCEEEEEEC
Confidence 999999988776666554 22211 1111111122 4677774 478888888 78999999853
No 77
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.87 E-value=65 Score=39.31 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=70.3
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-e-CCEEEEEEcCCCcEEEEEeccCc
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAE 175 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~-~g~l~ald~~tG~~~W~~~~~~~ 175 (859)
.++-|+++++|.-||...|-=.=.+.-....+ .. + .....+.+++. + ||+|.|.|...++--=++..|.+
T Consensus 364 ~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V-t~---v----~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 364 LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV-TA---V----QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred EEEeccCCCcEEEEeccCceEEEEeccCCCce-EE---E----EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 33336678899999999998877776554432 11 1 12224666664 4 99999999999988778777764
Q ss_pred ceeeeeEEEee-cCCeEEEEEecCCceeEEEEEEcCCCceeeee
Q 003001 176 SVEVQQVIQLD-ESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 176 ~~~~~~~v~~~-~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (859)
.. ..++-.. ++..|++ |... ++.+...+.+||+.+.-.
T Consensus 436 ~Q--fscvavD~sGelV~A-G~~d--~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 436 IQ--FSCVAVDPSGELVCA-GAQD--SFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred ee--eeEEEEcCCCCEEEe-eccc--eEEEEEEEeecCeeeehh
Confidence 32 2232122 3455554 4333 467888999999988554
No 78
>PTZ00420 coronin; Provisional
Probab=88.69 E-value=24 Score=42.55 Aligned_cols=69 Identities=4% Similarity=0.078 Sum_probs=47.9
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccC
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~ 126 (859)
+..++.+|.|.-.|.++|+.+++..... .+..+....++.+++.++.++.++.||+.+|+.+-+.....
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~~i~~~~--~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAFQINMPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecCC--cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 3467889999999999999888765432 24333222334455546567799999999999986665443
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.59 E-value=35 Score=40.86 Aligned_cols=180 Identities=16% Similarity=0.188 Sum_probs=114.6
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~ 132 (859)
++.++.++.++.|...|..+|..+=..-.+..+.+.++..+.+++.++-++.+.+++-||..+|.-.=.........
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv--- 294 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSV--- 294 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceE---
Confidence 77788999999999999999987765444444444445333445666545557799999999999887777555433
Q ss_pred cccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 133 LLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 133 ~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
.. ....+.+.+. .|..|.+-+..+|..+=....... +.+.+. ..++.++..+++| .|...|+.
T Consensus 295 -~~------~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~---~V~~v~-~~~~~lvsgs~d~----~v~VW~~~ 359 (537)
T KOG0274|consen 295 -RC------LTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG---PVNCVQ-LDEPLLVSGSYDG----TVKVWDPR 359 (537)
T ss_pred -EE------EEccCceEeeccCCceEEEEeccCcceEEEeccccc---cEEEEE-ecCCEEEEEecCc----eEEEEEhh
Confidence 11 1223445554 477888888888876655543111 222332 3567777767766 47888999
Q ss_pred CCceeeeeeeecccCccC--ceEEecC-cEEEEEECCCCeEEEEEeecC
Q 003001 211 NGELLNHETAAFSGGFVG--DVALVSS-DTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 211 tG~~~w~~~v~~~~~~s~--~~~~v~~-~~lv~~d~~~~~l~v~~L~sg 256 (859)
+|+.+...+- -++ .++++++ +.++-...+ +.+.+-|+.++
T Consensus 360 ~~~cl~sl~g-----H~~~V~sl~~~~~~~~~Sgs~D-~~IkvWdl~~~ 402 (537)
T KOG0274|consen 360 TGKCLKSLSG-----HTGRVYSLIVDSENRLLSGSLD-TTIKVWDLRTK 402 (537)
T ss_pred hceeeeeecC-----CcceEEEEEecCcceEEeeeec-cceEeecCCch
Confidence 9988877642 222 3445566 555544433 56777777776
No 80
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.12 E-value=43 Score=37.34 Aligned_cols=162 Identities=9% Similarity=0.076 Sum_probs=85.3
Q ss_pred CCEEEEEeCC--CEEEEEECCCCccceEEEcCCCc--cee-eeeeeecCEEEEEEcCC-----------CeEEEEeCCCC
Q 003001 53 RKRVVVSTEE--NVIASLDLRHGEIFWRHVLGIND--VVD-GIDIALGKYVITLSSDG-----------STLRAWNLPDG 116 (859)
Q Consensus 53 ~~~Vyvat~~--g~l~ALd~~tG~ilWR~~l~~~~--~i~-~l~~~~~~~~V~Vs~~g-----------~~v~Ald~~tG 116 (859)
++.|||.... ..+..+|+.+.+-.|+..-+.+. ... ++ +..++.++++||.+ ..+..||+.+.
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~-~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVA-AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceE-EEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 6788886543 56888998766778997554331 111 22 34577777777742 24677787654
Q ss_pred cEeEEEeccCccccCCcccccccccccCCCeEEEEeC-----------------------------------------CE
Q 003001 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-----------------------------------------GC 155 (859)
Q Consensus 117 ~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~-----------------------------------------g~ 155 (859)
.|+.-...... ...+.......++.|+++++ ..
T Consensus 96 --~W~~~~~~~p~----~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (346)
T TIGR03547 96 --SWQKLDTRSPV----GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169 (346)
T ss_pred --EEecCCCCCCC----cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce
Confidence 37754321110 01110001012577777631 35
Q ss_pred EEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC---ceeEEEEEEcCCCceeeeeeeecc
Q 003001 156 LHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS---SQFHAYQINAMNGELLNHETAAFS 223 (859)
Q Consensus 156 l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~---~~~~v~ald~~tG~~~w~~~v~~~ 223 (859)
+.++|..+. .|+.-.+.+........-...++.+|++|-... ....+..+|.....-.|+..-..|
T Consensus 170 v~~YDp~t~--~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 170 VLSYDPSTN--QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred EEEEECCCC--ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 677777664 577643322110011111245789998875421 112345566666677798754443
No 81
>PLN00181 protein SPA1-RELATED; Provisional
Probab=87.91 E-value=85 Score=39.50 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=66.0
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+..+++++.+|.|...|..+|+.+....-.. ..+..+... .++..++.++.++.++.||..+|..+-.........
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~-- 621 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC-- 621 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeE--
Confidence 4568888899999999999999887764322 223333222 233445546667899999999998765554332211
Q ss_pred CcccccccccccCCCeEEEE--eCCEEEEEEcCCCcE
Q 003001 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEI 166 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~ 166 (859)
.+. -...++..++. .||.++.+|..+++.
T Consensus 622 ---~v~---~~~~~g~~latgs~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 622 ---CVQ---FPSESGRSLAFGSADHKVYYYDLRNPKL 652 (793)
T ss_pred ---EEE---EeCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 111 00113444443 489999999988763
No 82
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=87.43 E-value=44 Score=35.67 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=76.5
Q ss_pred EEEE-EcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcE--EEEEeccC
Q 003001 98 VITL-SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI--LWTRDFAA 174 (859)
Q Consensus 98 ~V~V-s~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~--~W~~~~~~ 174 (859)
++.+ ++.+-++|-|.+.+|.=.-..+.....+ ..+++.+ + .+.+.+..+-.++.+|..++++ +=+++...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqV-NrLeiTp-----d-k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQV-NRLEITP-----D-KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccce-eeEEEcC-----C-cchhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence 4444 4568899999999999998888776554 4445544 2 2444456788899999988874 44444332
Q ss_pred cceeeeeEEEeecCCeEEEEEecC--------CceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCC
Q 003001 175 ESVEVQQVIQLDESDQIYVVGYAG--------SSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRS 246 (859)
Q Consensus 175 ~~~~~~~~v~~~~~~~vyvv~~~g--------~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~ 246 (859)
. .|-++||+- +..+.+-..|+.+ +.=++....++.+..-++-..+..|+..|. +|
T Consensus 84 k--------------NVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dq-sg 146 (311)
T KOG0315|consen 84 K--------------NVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-SG 146 (311)
T ss_pred C--------------ceEEEEEeecCeEEEecCCCceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecC-CC
Confidence 2 233334331 1111233344433 111111122222222122224556666774 58
Q ss_pred eEEEEEeecCe
Q 003001 247 ILVTVSFKNRK 257 (859)
Q Consensus 247 ~l~v~~L~sg~ 257 (859)
.+++=||+...
T Consensus 147 ~irvWDl~~~~ 157 (311)
T KOG0315|consen 147 NIRVWDLGENS 157 (311)
T ss_pred cEEEEEccCCc
Confidence 89999998765
No 83
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.05 E-value=81 Score=38.35 Aligned_cols=194 Identities=15% Similarity=0.241 Sum_probs=106.4
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccc--eEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIF--WRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~il--WR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.++..+|++.....+.-.+..+|+.+ |+..-+.| +-.+.....+.++..++-++.++.||-..|...=.....+++
T Consensus 72 ~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P--vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGv 149 (775)
T KOG0319|consen 72 PDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP--VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGV 149 (775)
T ss_pred CCccEEEEeeccceEEEEEcccchHhHhHhhccCCC--eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCce
Confidence 35777999999999988899999764 55433433 223322233456665666789999999999888888876655
Q ss_pred ccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcE----------------------------------EEEEec
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEI----------------------------------LWTRDF 172 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~----------------------------------~W~~~~ 172 (859)
.+ .+.+-+ .. ...+++. .|+.+++.|..++.. +|.+..
T Consensus 150 Vs-sl~F~~---~~--~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 150 VS-SLLFHP---HW--NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ 223 (775)
T ss_pred EE-EEEeCC---cc--chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence 41 111211 10 1112222 366666666665544 344421
Q ss_pred cCcc--e----eeeeEEEeec-----CCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEE
Q 003001 173 AAES--V----EVQQVIQLDE-----SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTL 241 (859)
Q Consensus 173 ~~~~--~----~~~~~v~~~~-----~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~ 241 (859)
-... + ..+.++.... +..++.+|-.| .+--+|.++|+.+...+.+....+.+-..+.+.+.+.++
T Consensus 224 ~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g----~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 224 YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG----VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred hhhhheechhhheeeEEEechhcCCcceEEEEecCCc----eEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 1100 0 1122221111 22344443333 577789999998877654422224443333455555565
Q ss_pred ECCCCeEEEEEeecCe
Q 003001 242 DTTRSILVTVSFKNRK 257 (859)
Q Consensus 242 d~~~~~l~v~~L~sg~ 257 (859)
..+ .++...+..+..
T Consensus 300 tae-Qnl~l~d~~~l~ 314 (775)
T KOG0319|consen 300 TAE-QNLFLYDEDELT 314 (775)
T ss_pred Ecc-ceEEEEEccccE
Confidence 544 457777766665
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=87.03 E-value=13 Score=39.53 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=73.2
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEecc
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~ 173 (859)
.+..+.-+++++.||.||-.+|+..=+..+..++- ++++.. ++.++.. .++.+.-.|+++=.++=.++.|
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt--SlEvs~-------dG~ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT--SLEVSQ-------DGRILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCc--ceeecc-------CCCEEEEecCceeEEeccccccceeeccCc
Confidence 34444435778899999999999998888877653 344432 5666665 5778888899888888888776
Q ss_pred CcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeee
Q 003001 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 174 ~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (859)
-... -..+ .-...+||. |+..++++-+|-.||+.+-.+
T Consensus 225 ~nV~-SASL---~P~k~~fVa---Gged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 225 CNVE-SASL---HPKKEFFVA---GGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred cccc-cccc---cCCCceEEe---cCcceEEEEEeccCCceeeec
Confidence 3211 1111 122356664 444568999999999988664
No 85
>PHA02713 hypothetical protein; Provisional
Probab=85.80 E-value=34 Score=41.28 Aligned_cols=162 Identities=11% Similarity=0.073 Sum_probs=84.8
Q ss_pred EEEEEECCCCccceEEEcCCCcceee-eeeeecCEEEEEEcCC------CeEEEEeCCCCcEeEEEeccCccccCCcccc
Q 003001 64 VIASLDLRHGEIFWRHVLGINDVVDG-IDIALGKYVITLSSDG------STLRAWNLPDGQMVWESFLRGSKHSKPLLLV 136 (859)
Q Consensus 64 ~l~ALd~~tG~ilWR~~l~~~~~i~~-l~~~~~~~~V~Vs~~g------~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~ 136 (859)
.+..+|+.+++ |+..-+.+..... ..+..++.++++||.. ..+..+|+.+.+ |+.- ..-.. + ..
T Consensus 273 ~v~~yd~~~~~--W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~-~~m~~--~--R~ 343 (557)
T PHA02713 273 CILVYNINTME--YSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVEL-PPMIK--N--RC 343 (557)
T ss_pred CEEEEeCCCCe--EEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeC-CCCcc--h--hh
Confidence 46789998874 8875433321111 1134577777777632 358889988774 8532 21111 0 00
Q ss_pred cccccccCCCeEEEEeC-------CEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCCeEEEEEecCCc--------
Q 003001 137 PTNLKVDKDSLILVSSK-------GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGSS-------- 200 (859)
Q Consensus 137 ~~~~~~~~~~~VvV~~~-------g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~~vyvv~~~g~~-------- 200 (859)
..+ .+.-++.+++.++ ..+.++|..+. .|+.-.+-+.- ....+ ..-++.+|++|...+.
T Consensus 344 ~~~-~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~--~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 344 RFS-LAVIDDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGM--CVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred cee-EEEECCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccE--EEECCEEEEEeCCCcccccccccc
Confidence 000 1222577888642 24778888775 58864332211 01112 2468999998753210
Q ss_pred ------------eeEEEEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEE
Q 003001 201 ------------QFHAYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTL 241 (859)
Q Consensus 201 ------------~~~v~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~ 241 (859)
.-.+..+|+.+. .|+..-..+...... +...++.++++.
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~r~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTGTIRPGVVSHKDDIYVVC 470 (557)
T ss_pred cccccccccccccceEEEECCCCC--eEeecCCCCcccccCcEEEECCEEEEEe
Confidence 124778898876 487644444333332 222344455443
No 86
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.78 E-value=61 Score=35.70 Aligned_cols=188 Identities=12% Similarity=0.149 Sum_probs=88.4
Q ss_pred EEEEEe-CCCEEEEEECCC-CccceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCC-CCcEeEEEeccCcccc
Q 003001 55 RVVVST-EENVIASLDLRH-GEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLP-DGQMVWESFLRGSKHS 130 (859)
Q Consensus 55 ~Vyvat-~~g~l~ALd~~t-G~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~-tG~llW~~~~~~~~ls 130 (859)
++|++. .++.|..+|..+ |++.=.+.++.......+....++..+++++ ..+.+..|+.. +|++.=......+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~--- 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP--- 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC---
Confidence 478885 467788888864 5433223333222222232222445565543 35678888875 5654211111111
Q ss_pred CCcccccccccccCCC-eEEEE--eCCEEEEEEcC-CCcE---EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 131 KPLLLVPTNLKVDKDS-LILVS--SKGCLHAVSSI-DGEI---LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~VvV~--~~g~l~ald~~-tG~~---~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
.....+ ..+.++ .+++. .++.+..++.. +|.. .-.. +.. ..+..+.....+..+|+.....+ .
T Consensus 80 ~~p~~i----~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~-~~~~~~~~~p~g~~l~v~~~~~~---~ 149 (330)
T PRK11028 80 GSPTHI----STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGL-EGCHSANIDPDNRTLWVPCLKED---R 149 (330)
T ss_pred CCceEE----EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCC-CcccEeEeCCCCCEEEEeeCCCC---E
Confidence 010111 222233 45654 37888888875 4432 2211 110 11222322235567777665433 4
Q ss_pred EEEEEcCC-Cceeee--eeeecccCccCc-eEEe-cCcEEEEEECCCCeEEEEEeec
Q 003001 204 AYQINAMN-GELLNH--ETAAFSGGFVGD-VALV-SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 204 v~ald~~t-G~~~w~--~~v~~~~~~s~~-~~~v-~~~~lv~~d~~~~~l~v~~L~s 255 (859)
+..+|..+ |...-. .....+.+-... +.+- ++..+++.+...+++.+.++..
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 66666655 543211 111122111111 2222 3456767776678899999873
No 87
>PRK05137 tolB translocation protein TolB; Provisional
Probab=85.34 E-value=79 Score=36.60 Aligned_cols=189 Identities=15% Similarity=0.086 Sum_probs=87.9
Q ss_pred cCCCEEEEEe-C--CCEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcC--CCeEEEEeCCCCcEeEEEec
Q 003001 51 TGRKRVVVST-E--ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 51 ~~~~~Vyvat-~--~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~ 124 (859)
+++++|+..+ + ...|+.+|..+|+. ++....++.+..... +.|+.+++.... ...++.||..+|.+. ++
T Consensus 211 pDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~L 285 (435)
T PRK05137 211 PNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---RL 285 (435)
T ss_pred CCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE---Ec
Confidence 4455554443 2 46899999999864 232222221212111 245555554332 246999999888753 22
Q ss_pred cCccccCCcccccccccccCCCe-EEEEe----CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSL-ILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~-VvV~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
..... ....+ ....++. ++..+ ...++.+|..+|++.--.... ... .....+..+..+++....++
T Consensus 286 t~~~~---~~~~~---~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~--~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 286 TDSPA---IDTSP---SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRY--STPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred cCCCC---ccCce---eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-Ccc--cCeEECCCCCEEEEEEcCCC
Confidence 21110 00001 1122343 33322 237899998877654222111 111 11222345666666554332
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCC-----CeEEEEEeecCe
Q 003001 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTR-----SILVTVSFKNRK 257 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~-----~~l~v~~L~sg~ 257 (859)
...+..+|+.+|... . +.............++..+++..... ..|++.++..+.
T Consensus 357 -~~~i~~~d~~~~~~~-~--lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 357 -QFSIGVMKPDGSGER-I--LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred -ceEEEEEECCCCceE-e--ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 346777887666432 1 11111111112212334444443222 368888886654
No 88
>PHA02790 Kelch-like protein; Provisional
Probab=85.01 E-value=29 Score=40.93 Aligned_cols=147 Identities=6% Similarity=-0.034 Sum_probs=78.4
Q ss_pred CCCEEEEEeCC---CEEEEEECCCCccceEEEcCCCcceeeee-eeecCEEEEEEcCC---CeEEEEeCCCCcEeEEEec
Q 003001 52 GRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSDG---STLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 52 ~~~~Vyvat~~---g~l~ALd~~tG~ilWR~~l~~~~~i~~l~-~~~~~~~V~Vs~~g---~~v~Ald~~tG~llW~~~~ 124 (859)
-++.||+.+.. ..+-..|+.++ .|+..-+-+....... +..++.++++||.. ..+..||+.++ .|+.-.
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n--~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~ 392 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDA--AWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGP 392 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCC--eEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCC
Confidence 37788887653 34677787665 4876443331111111 23566677776642 35778998765 688642
Q ss_pred cCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCcc-eeeeeEEEeecCCeEEEEEecC-Cc-e
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAES-VEVQQVIQLDESDQIYVVGYAG-SS-Q 201 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~v~~~~~~~vyvv~~~g-~~-~ 201 (859)
+-+ . +..... .+.-++.++|.+ |.+.++|..++ .|+.-.+-+. ..-..+ +.-++.+|++|... +. .
T Consensus 393 ~m~-~----~r~~~~-~~~~~~~IYv~G-G~~e~ydp~~~--~W~~~~~m~~~r~~~~~--~v~~~~IYviGG~~~~~~~ 461 (480)
T PHA02790 393 STY-Y----PHYKSC-ALVFGRRLFLVG-RNAEFYCESSN--TWTLIDDPIYPRDNPEL--IIVDNKLLLIGGFYRGSYI 461 (480)
T ss_pred CCC-C----ccccce-EEEECCEEEEEC-CceEEecCCCC--cEeEcCCCCCCccccEE--EEECCEEEEECCcCCCccc
Confidence 211 1 111100 112256777754 55778888765 7986433211 101112 24688999987532 11 1
Q ss_pred eEEEEEEcCCCc
Q 003001 202 FHAYQINAMNGE 213 (859)
Q Consensus 202 ~~v~ald~~tG~ 213 (859)
-.+..+|+.+++
T Consensus 462 ~~ve~Yd~~~~~ 473 (480)
T PHA02790 462 DTIEVYNNRTYS 473 (480)
T ss_pred ceEEEEECCCCe
Confidence 236667777654
No 89
>PRK04922 tolB translocation protein TolB; Provisional
Probab=85.00 E-value=82 Score=36.48 Aligned_cols=150 Identities=15% Similarity=0.083 Sum_probs=73.3
Q ss_pred cCCCEEEEEeC---CCEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEc-CC-CeEEEEeCCCCcEeEEEec
Q 003001 51 TGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSS-DG-STLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 51 ~~~~~Vyvat~---~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~-~g-~~v~Ald~~tG~llW~~~~ 124 (859)
++++.++..+. ...|+.+|.++|+..--..++.. ...... +.|+.+++... +| ..++.||..+|+.. +...
T Consensus 213 pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~--~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~ 289 (433)
T PRK04922 213 PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI--NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN 289 (433)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC--ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc
Confidence 34555555542 34799999988875322212111 111111 23555555433 22 47999999988753 2211
Q ss_pred cCccccCCcccccccccccCCCe-EEEEe--CC--EEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSL-ILVSS--KG--CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~-VvV~~--~g--~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
..... ... ....++. +++.+ +| .++.+|..+|+..--....... .....+..+..+++....++
T Consensus 290 ~~~~~-~~~-------~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~---~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 290 HFGID-TEP-------TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYN---ARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred CCCCc-cce-------EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCc---cCEEECCCCCEEEEEECCCC
Confidence 11111 111 1122343 33332 22 5888888888753221111111 11222345666666544332
Q ss_pred ceeEEEEEEcCCCcee
Q 003001 200 SQFHAYQINAMNGELL 215 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~ 215 (859)
...+..+|+.+|+..
T Consensus 359 -~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 359 -QYRIAVMDLSTGSVR 373 (433)
T ss_pred -ceeEEEEECCCCCeE
Confidence 346888899888764
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.94 E-value=24 Score=40.60 Aligned_cols=146 Identities=15% Similarity=0.228 Sum_probs=76.0
Q ss_pred CCEEEEE-eCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEE-EcCCCeEEEEeCCCCcEeEEEeccCc--c
Q 003001 53 RKRVVVS-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRGS--K 128 (859)
Q Consensus 53 ~~~Vyva-t~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~V-s~~g~~v~Ald~~tG~llW~~~~~~~--~ 128 (859)
|++++++ ++.|.|--+|.++ +.+=|+--....++........++.+++ ++++..+.-||++++.+ +..+.+. .
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDY 155 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDY 155 (487)
T ss_pred CCeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcce
Confidence 6666655 5579999999666 2222222121112222212234555555 55678899999999886 5555432 2
Q ss_pred ccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
. ....+.+ ..+.+++. .||.+...|..+-. -|..+...+.- .+.+.. ..++..++ + +||. .+-.
T Consensus 156 V-R~g~~~~------~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~p-Ve~vl~-lpsgs~ia-s-AgGn--~vkV 221 (487)
T KOG0310|consen 156 V-RCGDISP------ANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCP-VESVLA-LPSGSLIA-S-AGGN--SVKV 221 (487)
T ss_pred e-Eeecccc------CCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCc-eeeEEE-cCCCCEEE-E-cCCC--eEEE
Confidence 2 1111222 13445554 49999888877653 45554432221 233432 23444443 2 2333 3566
Q ss_pred EEcCCCcee
Q 003001 207 INAMNGELL 215 (859)
Q Consensus 207 ld~~tG~~~ 215 (859)
+|+.+|..+
T Consensus 222 WDl~~G~ql 230 (487)
T KOG0310|consen 222 WDLTTGGQL 230 (487)
T ss_pred EEecCCcee
Confidence 788766554
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=84.85 E-value=66 Score=35.29 Aligned_cols=216 Identities=16% Similarity=0.174 Sum_probs=114.7
Q ss_pred cccccccccccEeEE---EeccCceeeeeeeeeccCCCEEEEEeC--CCEEEEEECCCCccceEEEcCCC-cceeeeeee
Q 003001 20 SLSLYEDQVGLMDWH---QQYIGKVKHAVFHTQKTGRKRVVVSTE--ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIA 93 (859)
Q Consensus 20 ~~Al~edq~G~~dW~---~~~vG~~~~~~f~~~~~~~~~Vyvat~--~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~ 93 (859)
+.-||+...|+..-. ++| |.- ...|.. .+..+..++. +..|.-|+..|-+-+=- +++. ..+..+...
T Consensus 37 sl~LYd~~~g~~~~ti~skky-G~~-~~~Fth---~~~~~i~sStk~d~tIryLsl~dNkylRY--F~GH~~~V~sL~~s 109 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKTINSKKY-GVD-LACFTH---HSNTVIHSSTKEDDTIRYLSLHDNKYLRY--FPGHKKRVNSLSVS 109 (311)
T ss_pred eEEEEEcCCCceeeEeecccc-ccc-EEEEec---CCceEEEccCCCCCceEEEEeecCceEEE--cCCCCceEEEEEec
Confidence 566787777775333 222 222 233432 2455666665 67889999888654422 2222 234444333
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe-CC-EEEEEEcCC--CcEEEE
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KG-CLHAVSSID--GEILWT 169 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-~g-~l~ald~~t--G~~~W~ 169 (859)
-.++.+.=++.+++||.||...=+-.=-..+... ++. +-+..|.+++.. ++ .+..+|..+ +.+-=+
T Consensus 110 P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~------pi~----AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t 179 (311)
T KOG1446|consen 110 PKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR------PIA----AFDPEGLIFALANGSELIKLYDLRSFDKGPFTT 179 (311)
T ss_pred CCCCeEEecccCCeEEeeEecCCCCceEEecCCC------cce----eECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence 3445655455677999999863222211222221 121 234457777764 33 666666554 223333
Q ss_pred EeccCcc-eeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeeccc-CccCceEE-ecCcEEEEEECCCC
Q 003001 170 RDFAAES-VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSG-GFVGDVAL-VSSDTLVTLDTTRS 246 (859)
Q Consensus 170 ~~~~~~~-~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~-~~s~~~~~-v~~~~lv~~d~~~~ 246 (859)
+....+. .+...+-. ..+|...+++-.++ .++.+|+-+|.+.-........ .+...+.+ ..+..+.+.+ +.|
T Consensus 180 f~i~~~~~~ew~~l~F-S~dGK~iLlsT~~s---~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs-~dg 254 (311)
T KOG1446|consen 180 FSITDNDEAEWTDLEF-SPDGKSILLSTNAS---FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS-DDG 254 (311)
T ss_pred EccCCCCccceeeeEE-cCCCCEEEEEeCCC---cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec-CCC
Confidence 3333111 11112221 24555555665554 4788999999987666543322 23334444 3555555554 468
Q ss_pred eEEEEEeecCe
Q 003001 247 ILVTVSFKNRK 257 (859)
Q Consensus 247 ~l~v~~L~sg~ 257 (859)
.+++-.+++|.
T Consensus 255 ~i~vw~~~tg~ 265 (311)
T KOG1446|consen 255 TIHVWNLETGK 265 (311)
T ss_pred cEEEEEcCCCc
Confidence 99999999987
No 92
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=84.53 E-value=1.6 Score=51.05 Aligned_cols=149 Identities=16% Similarity=0.220 Sum_probs=90.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc---------------ceeeeee-eecCEEEEEEcCCCeEEEEeCCC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---------------VVDGIDI-ALGKYVITLSSDGSTLRAWNLPD 115 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~---------------~i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~t 115 (859)
++.++-|++++|.|- +||...+.-. -|..++. +...+++.+++.+-+++.||..+
T Consensus 639 D~~rLAVa~ddg~i~---------lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 639 DDERLAVATDDGQIN---------LWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred ChHHeeecccCceEE---------EEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 466788888888763 5776543220 0112221 13445666677778999999999
Q ss_pred CcEeEEEeccCccccCCcccccccccccCCCeEEE--EeCCEEEEEEcCCCcEE-EEEeccCcceeeeeEEEeecCCeEE
Q 003001 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV--SSKGCLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQIY 192 (859)
Q Consensus 116 G~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV--~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~v~~~~~~~vy 192 (859)
+++.=+........ .+. +...+|..++ -.||+++.++..++++. .+-+.+.+ ..-.+++.+..+..+.
T Consensus 710 ~~~~~~l~gHtdqI-f~~-------AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg-tRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQI-FGI-------AWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG-TRGARILWACDGRIVI 780 (1012)
T ss_pred hhhhheeccCcCce-eEE-------EECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc-CcceeEEEEecCcEEE
Confidence 99987776654432 111 2233555555 35999999999998754 44333333 2245565566788888
Q ss_pred EEEecCCceeEEEEEEcC--CCceeeee
Q 003001 193 VVGYAGSSQFHAYQINAM--NGELLNHE 218 (859)
Q Consensus 193 vv~~~g~~~~~v~ald~~--tG~~~w~~ 218 (859)
++|++..+...+..+|++ +|.++...
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~ 808 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQTLDLRPLYTQ 808 (1012)
T ss_pred EecccccchhhhhhhhhhhccCCcceee
Confidence 888887555555555654 35555444
No 93
>PRK04792 tolB translocation protein TolB; Provisional
Probab=83.93 E-value=94 Score=36.30 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=73.0
Q ss_pred cCCCEEEEE-eCC--CEEEEEECCCCccceEEEcCCCcceeeee-eeecCEEEEEEcCC--CeEEEEeCCCCcEeEEEec
Q 003001 51 TGRKRVVVS-TEE--NVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSDG--STLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 51 ~~~~~Vyva-t~~--g~l~ALd~~tG~ilWR~~l~~~~~i~~l~-~~~~~~~V~Vs~~g--~~v~Ald~~tG~llW~~~~ 124 (859)
+++++|+.. .++ ..|+.+|..+|+.. +....+....... .+.++.+++.+..+ ..|+.+|..+|++. +...
T Consensus 227 PDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~ 303 (448)
T PRK04792 227 PDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITR 303 (448)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECcc
Confidence 345555444 333 47999999988752 2111111111111 12455566654333 35999999888642 1111
Q ss_pred cCccccCCcccccccccccCCC-eEEEEe----CCEEEEEEcCCCcEEE-EEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDS-LILVSS----KGCLHAVSSIDGEILW-TRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~-~VvV~~----~g~l~ald~~tG~~~W-~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
..... .. + ....++ .+++.+ ...++.+|..+|+..- ++.... .. ....+..+..+++.+..+
T Consensus 304 ~~~~~-~~-p------~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~-~~---~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 304 HRAID-TE-P------SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ-NL---GGSITPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCc-cc-e------EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC-Cc---CeeECCCCCEEEEEEecC
Confidence 11111 01 1 111233 333322 3468999998887532 111111 11 111134566777665543
Q ss_pred CceeEEEEEEcCCCce
Q 003001 199 SSQFHAYQINAMNGEL 214 (859)
Q Consensus 199 ~~~~~v~ald~~tG~~ 214 (859)
+ ...++.+|+.+|+.
T Consensus 372 g-~~~I~~~dl~~g~~ 386 (448)
T PRK04792 372 G-KFNIARQDLETGAM 386 (448)
T ss_pred C-ceEEEEEECCCCCe
Confidence 2 34688899999875
No 94
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.55 E-value=82 Score=35.36 Aligned_cols=157 Identities=12% Similarity=0.124 Sum_probs=97.7
Q ss_pred ccCCCEEEEEe----------CCCEEEEEECCCCccceEEEcCCCccee------eeeeeecCEEEEEEc--CCCeEEEE
Q 003001 50 KTGRKRVVVST----------EENVIASLDLRHGEIFWRHVLGINDVVD------GIDIALGKYVITLSS--DGSTLRAW 111 (859)
Q Consensus 50 ~~~~~~Vyvat----------~~g~l~ALd~~tG~ilWR~~l~~~~~i~------~l~~~~~~~~V~Vs~--~g~~v~Al 111 (859)
+++++.+|+++ +.-+|...|++|=++.|...++...... .++...++..++|-. -...|.-.
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV 123 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV 123 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence 45678899875 2458999999999999999998751111 122234556666532 24579999
Q ss_pred eCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcC-CCcEEEEEecc--Ccceee--eeEEEe
Q 003001 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSI-DGEILWTRDFA--AESVEV--QQVIQL 185 (859)
Q Consensus 112 d~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~-tG~~~W~~~~~--~~~~~~--~~~v~~ 185 (859)
|.+.++.+=+..+++=.+ +.| .. .+....+ .||++.-+..+ +|++. +.... .+.-.+ ......
T Consensus 124 Dl~~~kvv~ei~~PGC~~-----iyP----~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 124 DLAAKKVVGEIDTPGCWL-----IYP----SG-NRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp ETTTTEEEEEEEGTSEEE-----EEE----EE-TTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEE
T ss_pred ECCCCceeeeecCCCEEE-----EEe----cC-CCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceE
Confidence 999999998877765332 333 12 2344444 49998888777 89987 33221 010001 011111
Q ss_pred ecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeee
Q 003001 186 DESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAA 221 (859)
Q Consensus 186 ~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~ 221 (859)
..++..|.+++.| .|+.+|.....+.+..+.+
T Consensus 193 ~~~~~~~F~Sy~G----~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 193 RDGGRLYFVSYEG----NVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp TTTTEEEEEBTTS----EEEEEEETTSSEEEEEEEE
T ss_pred CCCCeEEEEecCC----EEEEEeccCCcccccCccc
Confidence 3456777788888 5999999888777666544
No 95
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.53 E-value=42 Score=39.34 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=86.2
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEe-----EEEeccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV-----WESFLRG 126 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~ll-----W~~~~~~ 126 (859)
.+..++-++.++.+..-|.++|+.+=....... .+.++....++..++.++.++.++.||..+|..+ +......
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA 335 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence 356788899999999999999887655544333 3444422233344444555789999999999955 2111111
Q ss_pred ccccCCcccccccccccCCC-eEEEE-eCCEEEEEEcCCCcEEEEEeccCcc-eeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 127 SKHSKPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAES-VEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~-~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
.+ ..+ ....++ .+++. .|+.+.-.|..+|+..=++...... ........ ..++...+.+...+ .
T Consensus 336 -~~----~~~----~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~sg~~d~---~ 402 (456)
T KOG0266|consen 336 -PV----TSV----QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL-STGGKLIYSGSEDG---S 402 (456)
T ss_pred -ce----eEE----EECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc-cCCCCeEEEEeCCc---e
Confidence 11 111 111123 33333 3667888788888766555443222 12222322 23334333343332 5
Q ss_pred EEEEEcCCCceeeeee
Q 003001 204 AYQINAMNGELLNHET 219 (859)
Q Consensus 204 v~ald~~tG~~~w~~~ 219 (859)
+..+|..+|..+-...
T Consensus 403 v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 403 VYVWDSSSGGILQRLE 418 (456)
T ss_pred EEEEeCCccchhhhhc
Confidence 8888998887765543
No 96
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=82.30 E-value=61 Score=40.31 Aligned_cols=186 Identities=15% Similarity=0.103 Sum_probs=106.6
Q ss_pred CCCEEEEEeCCCEEEEEECCCCc---cceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGE---IFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~---ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
..+.+.++++++.+.+..-.+|+ ++=|..++.. .+.+..++..+..++++-.|-.++..|+...-..+...+.
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r----~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR----DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccce----EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 45678899999999888766654 4455554432 3322233345555777778999999999887776655443
Q ss_pred ccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcce--e----eeeEEEeecCCeEEEEEecCCc
Q 003001 129 HSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESV--E----VQQVIQLDESDQIYVVGYAGSS 200 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~--~----~~~~v~~~~~~~vyvv~~~g~~ 200 (859)
. ..+ ..+..+.+++ . .||.|+.+|..+|...-++..-.+.. . .-++.....++..-+.+..+
T Consensus 141 V-l~l-------~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-- 210 (933)
T KOG1274|consen 141 V-LQL-------SYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-- 210 (933)
T ss_pred e-eee-------eEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC--
Confidence 2 111 1222344444 3 59999999999998875554432222 1 11222234567777667666
Q ss_pred eeEEEEEEcCCCceeeeeeeeccc-CccCceEEe-cCcEEEEEECCCCeEEEEEeec
Q 003001 201 QFHAYQINAMNGELLNHETAAFSG-GFVGDVALV-SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 201 ~~~v~ald~~tG~~~w~~~v~~~~-~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~s 255 (859)
.|..++..+++.....+....+ .++- +-+- .+.++++.+. +|.+.+-+.++
T Consensus 211 --~Vkvy~r~~we~~f~Lr~~~~ss~~~~-~~wsPnG~YiAAs~~-~g~I~vWnv~t 263 (933)
T KOG1274|consen 211 --TVKVYSRKGWELQFKLRDKLSSSKFSD-LQWSPNGKYIAASTL-DGQILVWNVDT 263 (933)
T ss_pred --eEEEEccCCceeheeecccccccceEE-EEEcCCCcEEeeecc-CCcEEEEeccc
Confidence 3788888887777665422211 1111 1111 2345555554 35555555553
No 97
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.11 E-value=19 Score=41.63 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=60.1
Q ss_pred EeEEEeccCceeee-eeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc-ceeeeee-e--ecC--EEEEEEc
Q 003001 31 MDWHQQYIGKVKHA-VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDI-A--LGK--YVITLSS 103 (859)
Q Consensus 31 ~dW~~~~vG~~~~~-~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-~i~~l~~-~--~~~--~~V~Vs~ 103 (859)
.||...+ |..-.. ...+-......|+|.++.+ |++|+. +|+++|..+|+-.. ....+.. . .++ ..+.|++
T Consensus 231 ~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~-Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t 307 (418)
T PF14727_consen 231 PDWSFNL-GEQALDIQVVRFSSSESDIVVLGERS-LFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGT 307 (418)
T ss_pred ceeEEEC-CceeEEEEEEEcCCCCceEEEEecce-EEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEe
Confidence 8999975 765321 1111111244578888775 999996 89999999997652 1111211 1 111 2356677
Q ss_pred CCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 104 DGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 104 ~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
..+.|.-+ .+.+++|...+...++
T Consensus 308 ~t~~LlVy--~d~~L~WsA~l~~~PV 331 (418)
T PF14727_consen 308 HTGTLLVY--EDTTLVWSAQLPHVPV 331 (418)
T ss_pred cCCeEEEE--eCCeEEEecCCCCCCE
Confidence 77799999 6899999999865443
No 98
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=82.04 E-value=12 Score=40.79 Aligned_cols=185 Identities=18% Similarity=0.225 Sum_probs=100.0
Q ss_pred eCCCEEEEEECCCCcc-ceEEEcCCC---------cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 60 TEENVIASLDLRHGEI-FWRHVLGIN---------DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 60 t~~g~l~ALd~~tG~i-lWR~~l~~~---------~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
+++....|--+.+|++ +||...+.- ..+..++...++..+.-++.+..+|---..+|+.+=+++..+.-+
T Consensus 272 SRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 272 SRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV 351 (508)
T ss_pred cccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccc
Confidence 3455555555667775 588765321 112233223344444435567788888899999999998876544
Q ss_pred cCCcccccccccccCCC-eEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~-~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
..+...+ +| .++-. +||++..-+.++++-+=+++........-.+.....+..-++++.... .++.+
T Consensus 352 -n~a~ft~-------dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~im 420 (508)
T KOG0275|consen 352 -NEATFTD-------DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN---TVYIM 420 (508)
T ss_pred -cceEEcC-------CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC---eEEEE
Confidence 2333322 34 33333 699999999999988877766544332222222222222233333222 24444
Q ss_pred EcCCCceeeeeeeec--ccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 208 NAMNGELLNHETAAF--SGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 208 d~~tG~~~w~~~v~~--~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
++ .|+++....-+- ..++-..++-.-+..++|+-. .+.|+.....+|.
T Consensus 421 n~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE-D~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 421 NM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE-DGVLYCFSVLSGK 470 (508)
T ss_pred ec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEcc-CcEEEEEEeecCc
Confidence 43 566655542111 111111222223455667754 4788888888887
No 99
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.96 E-value=37 Score=40.02 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=64.0
Q ss_pred CCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeec
Q 003001 145 DSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222 (859)
Q Consensus 145 ~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~ 222 (859)
+..++|+ ..|.+..++...|++.|+...+...-..--+.....-+-+|-++.+ .++.-++.++++..-.....-
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad----~~v~~~~~~~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD----LKVVYILEKEKVIIRIWKEQK 144 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCc----eeEEEEecccceeeeeeccCC
Confidence 3456665 4999999999999999999865322101111112233445544433 468889999999875554333
Q ss_pred ccCccCceEEecCcEEEEEECCCCeEEEEEeecCee
Q 003001 223 SGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (859)
Q Consensus 223 ~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~~ 258 (859)
+. .+.-|+..++.+++.. .+++.+.+++++++
T Consensus 145 ~~-~~sl~is~D~~~l~~a---s~~ik~~~~~~kev 176 (541)
T KOG4547|consen 145 PL-VSSLCISPDGKILLTA---SRQIKVLDIETKEV 176 (541)
T ss_pred Cc-cceEEEcCCCCEEEec---cceEEEEEccCceE
Confidence 32 2222443344455544 36899999999883
No 100
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.84 E-value=42 Score=38.38 Aligned_cols=117 Identities=20% Similarity=0.235 Sum_probs=70.4
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcC---CCcEEEEEec
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSI---DGEILWTRDF 172 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~---tG~~~W~~~~ 172 (859)
+++=++.+.+|..||.++|+..=.....+..+ +.+..-+ . ...+++. .|+++...|.. .-...|++..
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V-q~l~wh~-----~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g 330 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSITHHGKKV-QTLEWHP-----Y-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG 330 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehhhcCCce-eEEEecC-----C-CceEEEeccccceEEeeeccCccccCceEEecc
Confidence 34324447899999999999987777555444 2222222 1 2344443 38888888877 3446788765
Q ss_pred cCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC-CceeeeeeeecccCccCce
Q 003001 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN-GELLNHETAAFSGGFVGDV 230 (859)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t-G~~~w~~~v~~~~~~s~~~ 230 (859)
. .+++..-......|+++...| .|+-+|+++ |+++|+.+..- .++++-|
T Consensus 331 ~-----VEkv~w~~~se~~f~~~tddG---~v~~~D~R~~~~~vwt~~AHd-~~ISgl~ 380 (463)
T KOG0270|consen 331 E-----VEKVAWDPHSENSFFVSTDDG---TVYYFDIRNPGKPVWTLKAHD-DEISGLS 380 (463)
T ss_pred c-----eEEEEecCCCceeEEEecCCc---eEEeeecCCCCCceeEEEecc-CCcceEE
Confidence 4 233322223444555555543 588899875 79999996433 3555533
No 101
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=81.18 E-value=97 Score=34.52 Aligned_cols=165 Identities=10% Similarity=0.064 Sum_probs=83.4
Q ss_pred CCCEEEEEeCC------------CEEEEEECCCCccceEEEcC-CCcceeeee-e-eecCEEEEEEcCC-----------
Q 003001 52 GRKRVVVSTEE------------NVIASLDLRHGEIFWRHVLG-INDVVDGID-I-ALGKYVITLSSDG----------- 105 (859)
Q Consensus 52 ~~~~Vyvat~~------------g~l~ALd~~tG~ilWR~~l~-~~~~i~~l~-~-~~~~~~V~Vs~~g----------- 105 (859)
-++.|||.... +.+..+|+.+. .|+.... .+....+.. . ..++.+++++|.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~--~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~ 139 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN--SWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADL 139 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCC--EEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhH
Confidence 37789987653 24778898876 4987642 111111111 1 2466666666642
Q ss_pred ----------------------------CeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeC----
Q 003001 106 ----------------------------STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK---- 153 (859)
Q Consensus 106 ----------------------------~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~---- 153 (859)
..+..||+.+. .|+.--.-+.. ...... .+.-++.++|+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~~~p~~----~r~~~~-~~~~~~~iyv~GG~~~~ 212 (346)
T TIGR03547 140 SAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLGENPFL----GTAGSA-IVHKGNKLLLINGEIKP 212 (346)
T ss_pred hhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECccCCCC----cCCCce-EEEECCEEEEEeeeeCC
Confidence 35888888765 58764322110 011100 1122567777532
Q ss_pred ----CEEEEEEcCCCcEEEEEeccCcce--e-e---eeEEEeecCCeEEEEEecCC-------------------ceeEE
Q 003001 154 ----GCLHAVSSIDGEILWTRDFAAESV--E-V---QQVIQLDESDQIYVVGYAGS-------------------SQFHA 204 (859)
Q Consensus 154 ----g~l~ald~~tG~~~W~~~~~~~~~--~-~---~~~v~~~~~~~vyvv~~~g~-------------------~~~~v 204 (859)
..+..++.....-.|+.-.+-+.- . + ....-...++.||++|-... ..-.+
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSS 292 (346)
T ss_pred CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEe
Confidence 124556665666779764432210 0 0 01101245889999875320 00134
Q ss_pred EEEEcCCCceeeeeeeecccCcc
Q 003001 205 YQINAMNGELLNHETAAFSGGFV 227 (859)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~~~~s 227 (859)
..+|+.+. .|+..-..|....
T Consensus 293 e~yd~~~~--~W~~~~~lp~~~~ 313 (346)
T TIGR03547 293 EVYALDNG--KWSKVGKLPQGLA 313 (346)
T ss_pred eEEEecCC--cccccCCCCCCce
Confidence 56677655 4877555554333
No 102
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.98 E-value=64 Score=35.05 Aligned_cols=194 Identities=9% Similarity=0.032 Sum_probs=107.0
Q ss_pred CCEEEEEeCCCEEEEEECCCCcc-ceEEEcCCCc-ceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcE-eEEEeccCccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEI-FWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM-VWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~i-lWR~~l~~~~-~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~l-lW~~~~~~~~l 129 (859)
++...+..+...|..||++|++. .|...++... +.... +....+.+-.++..|.-=-+|+.++.+ .|.........
T Consensus 114 dg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~-vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpy 192 (353)
T COG4257 114 DGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETA-VFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPY 192 (353)
T ss_pred CCCeeEecCcceeEEecCcccceEEeecccccCCCcccce-eeCCCccEEEeeccccceecCcccCceeeeccCCCCCCc
Confidence 44456666656899999998875 4544433331 12122 234445553333222333578887754 45555333221
Q ss_pred cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
..... .++.|++. .+..|.++|..+|..- ....+.+.. ..+++ .+...+.+++. -+|. ..+..
T Consensus 193 --Gi~at-------pdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRri-wsdpig~~wit-twg~--g~l~r 258 (353)
T COG4257 193 --GICAT-------PDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRI-WSDPIGRAWIT-TWGT--GSLHR 258 (353)
T ss_pred --ceEEC-------CCCcEEEEeccccceEEcccccCCcc-eecCCCccccccccc-ccCccCcEEEe-ccCC--ceeeE
Confidence 22222 26788885 5889999999999421 112222100 01122 23456677764 3432 25889
Q ss_pred EEcCCCceeeeeeeeccc-CccCceEEecCcEEEEE-ECCCCeEEEEEeecCeeeEEEEeec
Q 003001 207 INAMNGELLNHETAAFSG-GFVGDVALVSSDTLVTL-DTTRSILVTVSFKNRKIAFQETHLS 266 (859)
Q Consensus 207 ld~~tG~~~w~~~v~~~~-~~s~~~~~v~~~~lv~~-d~~~~~l~v~~L~sg~~~~~~~~l~ 266 (859)
+|+.+-. |+.= ..|. ......+.|++.-.||+ |.+.+.+..+|-++.+ +..+++.
T Consensus 259 fdPs~~s--W~ey-pLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~--ftv~p~p 315 (353)
T COG4257 259 FDPSVTS--WIEY-PLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR--FTVLPIP 315 (353)
T ss_pred eCccccc--ceee-eCCCCCCCcceeeeccCCcEEeeccccCceeecCcccce--EEEecCC
Confidence 9998765 6541 2232 22234556666555676 7777888888877766 7777764
No 103
>PRK03629 tolB translocation protein TolB; Provisional
Probab=80.74 E-value=1.2e+02 Score=35.22 Aligned_cols=150 Identities=15% Similarity=0.056 Sum_probs=72.0
Q ss_pred cCCCEEEEEe---CCCEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcC-C-CeEEEEeCCCCcEeEEEec
Q 003001 51 TGRKRVVVST---EENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD-G-STLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 51 ~~~~~Vyvat---~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~-g-~~v~Ald~~tG~llW~~~~ 124 (859)
++++++...+ ....|+.+|..+|+..--..++.. ...... +.|..++++... | ..|+.||..+|++.=-...
T Consensus 208 PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~--~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 208 PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC--cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC
Confidence 3455544333 245788889888874322222211 111111 245556665332 2 3699999998876421111
Q ss_pred cCccccCCcccccccccccCCCe-EEEEe--C--CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSL-ILVSS--K--GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~-VvV~~--~--g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
.... ... ....++. ++..+ + -.++.+|..+|+..--.. ..... .....+..+..+++.+..++
T Consensus 286 -~~~~-~~~-------~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~--~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 286 -RSNN-TEP-------TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQN--QDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred -CCCc-Cce-------EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec-CCCCc--cCEEECCCCCEEEEEEccCC
Confidence 1111 111 1122443 33332 2 278888988886542211 11111 11111334555655554432
Q ss_pred ceeEEEEEEcCCCcee
Q 003001 200 SQFHAYQINAMNGELL 215 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~ 215 (859)
...++.+|+.+|+..
T Consensus 354 -~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 354 -QQHIAKQDLATGGVQ 368 (429)
T ss_pred -CceEEEEECCCCCeE
Confidence 235788899998743
No 104
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=80.21 E-value=1.1e+02 Score=34.77 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=91.2
Q ss_pred cCCCEEEEEeC---CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEE-EcCCCeEEEEeCCCCcEeEEEeccC
Q 003001 51 TGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 51 ~~~~~Vyvat~---~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~V-s~~g~~v~Ald~~tG~llW~~~~~~ 126 (859)
.+++.+||+.. ++.+..+|+.++++.=....+... .+......+..+++ -...+.+..+|. ++..+|+ ....
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P--~~~a~~p~g~~vyv~~~~~~~v~vi~~-~~~~v~~-~~~~ 200 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP--TGVAVDPDGNKVYVTNSDDNTVSVIDT-SGNSVVR-GSVG 200 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc--ceEEECCCCCeEEEEecCCCeEEEEeC-CCcceec-cccc
Confidence 45778999987 689999999999887664443321 12212223333444 334578999994 6777776 3211
Q ss_pred ccccCCcccccccccccCC-CeEEEEe--C--CEEEEEEcCCCcEEEE-EeccCcceeeeeEEEeecCCeEEEEEecCCc
Q 003001 127 SKHSKPLLLVPTNLKVDKD-SLILVSS--K--GCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~-~~VvV~~--~--g~l~ald~~tG~~~W~-~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~ 200 (859)
... .....|....++.+ ..++|.. + +.+..+|..+|.+.|. ...... .+..+.....+..+|+.-..++
T Consensus 201 ~~~--~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv~~~~~~- 275 (381)
T COG3391 201 SLV--GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYVANSQGG- 275 (381)
T ss_pred ccc--ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEEEecCCC-
Confidence 111 00011111122223 4577742 3 6999999999999987 333332 1222322346777777644433
Q ss_pred eeEEEEEEcCCCceeeee
Q 003001 201 QFHAYQINAMNGELLNHE 218 (859)
Q Consensus 201 ~~~v~ald~~tG~~~w~~ 218 (859)
.+..+|..+....-..
T Consensus 276 --~V~vid~~~~~v~~~~ 291 (381)
T COG3391 276 --TVSVIDGATDRVVKTG 291 (381)
T ss_pred --eEEEEeCCCCceeeee
Confidence 5888888887776554
No 105
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=80.17 E-value=42 Score=39.60 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=94.7
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc----cc
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK----HS 130 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~----ls 130 (859)
+|++.....|+.||+.-|. |-..+... ..+.......-.+++..|+..|.|-+||+.+-...=.......+ ..
T Consensus 148 ly~~gsg~evYRlNLEqGr--fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGR--FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEccccc--cccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence 8888888899999999995 44444433 11222211234567777887789999999875554444433221 11
Q ss_pred CCcccccccccccCCC-eEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 131 KPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
...+.+. ......++ .+-|. +.|.++-+|+.+-+++-.-+.... +.+-.+-....++.--+++.+.. .+-.+|
T Consensus 226 ~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e-~pi~~l~~~~~~~q~~v~S~Dk~---~~kiWd 300 (703)
T KOG2321|consen 226 DAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE-LPIKKLDWQDTDQQNKVVSMDKR---ILKIWD 300 (703)
T ss_pred cccCcce-EEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc-cceeeecccccCCCceEEecchH---Hhhhcc
Confidence 1111111 01112123 23332 588888888888777765544321 10111100011111122243332 234456
Q ss_pred cCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEe
Q 003001 209 AMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSF 253 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L 253 (859)
..+|++.-... ...++..-|.+.+.+++.... +++.++..-+
T Consensus 301 ~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~An-e~~~m~~yyi 342 (703)
T KOG2321|consen 301 ECTGKPMASIE--PTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYI 342 (703)
T ss_pred cccCCceeecc--ccCCcCceeeecCCceEEEec-CCCcceeEEc
Confidence 66776654331 224555568777766554332 3344444433
No 106
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=79.84 E-value=89 Score=33.31 Aligned_cols=104 Identities=10% Similarity=0.107 Sum_probs=64.2
Q ss_pred EeCCCEEEEEE------CCCCccceEEEcCCCc------ceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 59 STEENVIASLD------LRHGEIFWRHVLGIND------VVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 59 at~~g~l~ALd------~~tG~ilWR~~l~~~~------~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
...+|.|++.- ..-=+.+|+...+... .|..+... ..+.+++.+ .++.++.||.+||+..-+++..
T Consensus 77 s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 77 SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred eccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCC
Confidence 33448888873 1334678988776542 12222122 234455545 4569999999999999999987
Q ss_pred CccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEE
Q 003001 126 GSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~ 170 (859)
...+ ..+++ ....+.++-. .||+++.-|.++|+-+=..
T Consensus 156 tDYv---H~vv~----R~~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 156 TDYV---HSVVG----RNANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ccee---eeeee----cccCcceeecCCCccEEEEeccccceeEEe
Confidence 7654 11221 1123455554 4899999999998865444
No 107
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.62 E-value=1.2e+02 Score=34.01 Aligned_cols=205 Identities=12% Similarity=0.154 Sum_probs=105.2
Q ss_pred eeeeccCCCEEEEEeCC---CEE--EEEECCCCccce--EEEcCCCcceeeeeeeecCEEEEEEcC-CCeEEEEeCCC-C
Q 003001 46 FHTQKTGRKRVVVSTEE---NVI--ASLDLRHGEIFW--RHVLGINDVVDGIDIALGKYVITLSSD-GSTLRAWNLPD-G 116 (859)
Q Consensus 46 f~~~~~~~~~Vyvat~~---g~l--~ALd~~tG~ilW--R~~l~~~~~i~~l~~~~~~~~V~Vs~~-g~~v~Ald~~t-G 116 (859)
|-......+.+|+.-+. |-+ +++|+++|+.-- |+.++.... -.+.....+..|+++.. .+.|..+-..+ |
T Consensus 44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p-~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG 122 (346)
T COG2706 44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP-CYVSVDEDGRFVFVANYHSGSVSVYPLQADG 122 (346)
T ss_pred eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC-eEEEECCCCCEEEEEEccCceEEEEEcccCC
Confidence 33334456789998654 544 456777786533 222222211 11211234446666554 46788887754 5
Q ss_pred cEeEEE-eccCcccc-----CCcccccccccccCCC-eEEE--EeCCEEEEEEcCCCcEEEEEecc-CcceeeeeEEEee
Q 003001 117 QMVWES-FLRGSKHS-----KPLLLVPTNLKVDKDS-LILV--SSKGCLHAVSSIDGEILWTRDFA-AESVEVQQVIQLD 186 (859)
Q Consensus 117 ~llW~~-~~~~~~ls-----~~~~~~~~~~~~~~~~-~VvV--~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~v~~~ 186 (859)
. +|.. +...-.-+ +..+-+ .+.....++ .+++ ++-.+++.++.++|+..=..+.. .+...|+.++.-.
T Consensus 123 ~-l~~~v~~~~h~g~~p~~rQ~~~h~-H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp 200 (346)
T COG2706 123 S-LQPVVQVVKHTGSGPHERQESPHV-HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP 200 (346)
T ss_pred c-cccceeeeecCCCCCCccccCCcc-ceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC
Confidence 4 4443 22111000 000000 000111134 4555 35678888888899864332221 2223356665445
Q ss_pred cCCeEEEEEecCCceeEEEEEEcCCCceeeeeee-ecccCccC----ceEEe--cCcEEEEEECCCCeEEEEEee
Q 003001 187 ESDQIYVVGYAGSSQFHAYQINAMNGELLNHETA-AFSGGFVG----DVALV--SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 187 ~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v-~~~~~~s~----~~~~v--~~~~lv~~d~~~~~l~v~~L~ 254 (859)
.+...|++.--. +.+.++.+|...|+..--+.+ .+|.++.+ ..+.+ .+.+|++.++...++.+.-+.
T Consensus 201 n~k~aY~v~EL~-stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 201 NGKYAYLVNELN-STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred CCcEEEEEeccC-CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 666778776443 346677778776776544433 44766666 12222 455777787776666555543
No 108
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=78.21 E-value=40 Score=38.08 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=49.4
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeee-cCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
.+.++.++.+++|.--|..||+.+=+.. -++-+....... |..+++ +..+.+||-||+.+|+++|+....
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~T-tckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCT-TCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeee-ecccceeEEEcCCCCcEeeecccc
Confidence 5667888899999999999999887754 333343332222 333444 445679999999999999998443
No 109
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=78.20 E-value=1.2e+02 Score=33.71 Aligned_cols=181 Identities=16% Similarity=0.303 Sum_probs=84.0
Q ss_pred ccccccccEeEEEeccCcee-eeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEE
Q 003001 23 LYEDQVGLMDWHQQYIGKVK-HAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVIT 100 (859)
Q Consensus 23 l~edq~G~~dW~~~~vG~~~-~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~ 100 (859)
++....|-..|..-.+..+. ...|.-....++.+++++..|.|+.= .||-.-|+...... ..+.......++..|.
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T--~DgG~tW~~~~~~~~gs~~~~~r~~dG~~va 160 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT--TDGGKTWQAVVSETSGSINDITRSSDGRYVA 160 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE--SSTTSSEEEEE-S----EEEEEE-TTS-EEE
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe--CCCCCCeeEcccCCcceeEeEEECCCCcEEE
Confidence 34444455667763222111 01111112235677778888876654 57888999877554 2232221224555777
Q ss_pred EEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceee
Q 003001 101 LSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEV 179 (859)
Q Consensus 101 Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~ 179 (859)
|+..|..+..|| .|..-|+-.-.... +.+..++ ...++.+++. .+|.|+.-+..+.-.-|..........-
T Consensus 161 vs~~G~~~~s~~--~G~~~w~~~~r~~~--~riq~~g----f~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 161 VSSRGNFYSSWD--PGQTTWQPHNRNSS--RRIQSMG----FSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp EETTSSEEEEE---TT-SS-EEEE--SS--S-EEEEE----E-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred EECcccEEEEec--CCCccceEEccCcc--ceehhce----ecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCc
Confidence 888887788996 49999986544221 2222332 1225666665 4777777775556677887553322211
Q ss_pred eeEEEe--ecCCeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 180 QQVIQL--DESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 180 ~~~v~~--~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
..+.+. ..++.+++++-.|. ++ .. .+|=.-|++.
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~G~----l~-~S-~DgGktW~~~ 268 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGSGT----LL-VS-TDGGKTWQKD 268 (302)
T ss_dssp S-EEEEEESSSS-EEEEESTT-----EE-EE-SSTTSS-EE-
T ss_pred eeeEEEEecCCCCEEEEeCCcc----EE-Ee-CCCCccceEC
Confidence 222221 36788998887763 22 33 4555668885
No 110
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.51 E-value=55 Score=39.62 Aligned_cols=173 Identities=12% Similarity=0.124 Sum_probs=91.5
Q ss_pred CCEEEEEeC-C------CEEEEEECCCCccceEEEcCCCcce--eeeeeeecCEEEEEEcCC------CeEEEEeCCCCc
Q 003001 53 RKRVVVSTE-E------NVIASLDLRHGEIFWRHVLGINDVV--DGIDIALGKYVITLSSDG------STLRAWNLPDGQ 117 (859)
Q Consensus 53 ~~~Vyvat~-~------g~l~ALd~~tG~ilWR~~l~~~~~i--~~l~~~~~~~~V~Vs~~g------~~v~Ald~~tG~ 117 (859)
.+.+|+... . ..+-.+|++++ .|+...+.+..- .+. +..++.++++||.+ ..+.-+|+.+++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a~m~~~r~~~~~-~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLAPMPSPRCRVGV-AVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcC--cEeecCCCCcccccccE-EEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 455666543 2 46889999999 677665444211 122 24566677777755 468889998888
Q ss_pred EeEEEeccCccccCCcccccccccccCCCeEEEEe--CC-----EEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCe
Q 003001 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KG-----CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (859)
Q Consensus 118 llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g-----~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~ 190 (859)
|.. +.+-.. .....+ ...-+|.+++.+ +| .+-++|..+ -.|+.-.+-... ....--..-++.
T Consensus 361 --W~~-~a~M~~--~R~~~~---v~~l~g~iYavGG~dg~~~l~svE~YDp~~--~~W~~va~m~~~-r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 361 --WTP-VAPMNT--KRSDFG---VAVLDGKLYAVGGFDGEKSLNSVECYDPVT--NKWTPVAPMLTR-RSGHGVAVLGGK 429 (571)
T ss_pred --eec-cCCccC--ccccce---eEEECCEEEEEeccccccccccEEEecCCC--CcccccCCCCcc-eeeeEEEEECCE
Confidence 876 222111 101111 111245666642 22 355555443 368776543221 111111357899
Q ss_pred EEEEEecCCce---eEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEE
Q 003001 191 IYVVGYAGSSQ---FHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTL 241 (859)
Q Consensus 191 vyvv~~~g~~~---~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~ 241 (859)
+|++|...+.. -.+-++|+.+++ |...-..+....+ .+...++.+|++.
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g~a~~~~~iYvvG 482 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFGVAVLNGKIYVVG 482 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccceEEEECCEEEEEC
Confidence 99988643222 457889998874 6664333322222 1222344455544
No 111
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=75.98 E-value=1.4e+02 Score=33.52 Aligned_cols=233 Identities=15% Similarity=0.191 Sum_probs=110.3
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCc
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPL 133 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~ 133 (859)
..+|.+.+++.|-+.|...-+++-.+- +--..+..+...-..++++-++.+...|.||..+-..+-........+ ..
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V-~~- 282 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV-AS- 282 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc-ee-
Confidence 348889999999999998876654322 100111122111224555546667899999998777666555443322 01
Q ss_pred ccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCC
Q 003001 134 LLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (859)
Q Consensus 134 ~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG 212 (859)
++ ....+..|+-. .|+++.--|...|+..=+........ +.+. ..-....|+.+-.. .+-..+.-.|
T Consensus 283 -V~----~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv--ral~-lhP~e~~fASas~d----nik~w~~p~g 350 (460)
T KOG0285|consen 283 -VM----CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV--RALC-LHPKENLFASASPD----NIKQWKLPEG 350 (460)
T ss_pred -EE----eecCCCceEEecCCceEEEeeeccCceeEeeeccccee--eEEe-cCCchhhhhccCCc----cceeccCCcc
Confidence 11 01114455554 37888777777777655443322111 1111 00111222211111 2344444445
Q ss_pred ceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCeeeEEEEeecCcCCCCCCceEEeecCCccceEEEe
Q 003001 213 ELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKI 291 (859)
Q Consensus 213 ~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 291 (859)
..+-. ++....+- .++-+ ++++++.. .++|.+..-+-++|. .+|... ...++++. +- -.|.|.--.
T Consensus 351 ~f~~n--lsgh~~ii-ntl~~nsD~v~~~G-~dng~~~fwdwksg~-nyQ~~~--t~vqpGSl--~s----EagI~as~f 417 (460)
T KOG0285|consen 351 EFLQN--LSGHNAII-NTLSVNSDGVLVSG-GDNGSIMFWDWKSGH-NYQRGQ--TIVQPGSL--ES----EAGIFASCF 417 (460)
T ss_pred chhhc--ccccccee-eeeeeccCceEEEc-CCceEEEEEecCcCc-cccccc--ccccCCcc--cc----ccceeEEee
Confidence 44422 11111111 12222 44555544 467888888888887 444331 11111111 10 012233222
Q ss_pred cC-cEEEEEEecCCcEEEEEeecC
Q 003001 292 NN-YKLFIRLTSEDKLEVVHKVDH 314 (859)
Q Consensus 292 ~~-~~~l~~~~~~~~~~v~~~~~~ 314 (859)
+. +.-|+.-+.+..+++++.++.
T Consensus 418 Dktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 418 DKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cccCceEEeccCCcceEEEecccc
Confidence 22 334555564556777776653
No 112
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=75.08 E-value=1.8e+02 Score=34.29 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=58.3
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEe
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~ 171 (859)
-.+.+++|+.. |.+--+|+.++.++-......-.. ..+ .+..++.-+. . .||.+.--|..+|..-=-..
T Consensus 289 qkd~lItVSl~-G~in~ln~~d~~~~~~i~GHnK~I----TaL----tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 289 QKDHLITVSLS-GTINYLNPSDPSVLKVISGHNKSI----TAL----TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred eCCeEEEEEcC-cEEEEecccCCChhheecccccce----eEE----EEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence 35667888875 589999999999877766654433 121 1122343333 3 38888877777775321111
Q ss_pred ccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCce
Q 003001 172 FAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (859)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~ 214 (859)
... .....++. ....+.+|.++++.. +-.++...+.-
T Consensus 360 ~~h-~nqI~~~~-~~~~~~~~t~g~Dd~----l~~~~~~~~~~ 396 (603)
T KOG0318|consen 360 KGH-TNQIKGMA-ASESGELFTIGWDDT----LRVISLKDNGY 396 (603)
T ss_pred ccc-cceEEEEe-ecCCCcEEEEecCCe----EEEEecccCcc
Confidence 111 11122221 234478888888863 44455544333
No 113
>PHA03098 kelch-like protein; Provisional
Probab=74.56 E-value=1.1e+02 Score=36.54 Aligned_cols=135 Identities=9% Similarity=0.064 Sum_probs=68.5
Q ss_pred eecCEEEEEEcCC------CeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeC-------CEEEEE
Q 003001 93 ALGKYVITLSSDG------STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------GCLHAV 159 (859)
Q Consensus 93 ~~~~~~V~Vs~~g------~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~-------g~l~al 159 (859)
..++.++++||.+ ..+..+|..+++ |+.- +.... +..... .+..++.+++.++ ..+..+
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~-~~~~~----~R~~~~-~~~~~~~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKV-PELIY----PRKNPG-VTVFNNRIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCe--eeEC-CCCCc----ccccce-EEEECCEEEEEeCCCCCEecceEEEE
Confidence 4577777777642 257889988764 7532 21111 011101 1222567777542 246777
Q ss_pred EcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecC--C-ceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cC
Q 003001 160 SSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG--S-SQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SS 235 (859)
Q Consensus 160 d~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g--~-~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~ 235 (859)
|..++ .|+...+-+.- .....-...++.+|++|... + ..-.+..+|+.++ .|+..-..|....+.+..+ ++
T Consensus 364 d~~~~--~W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~ 438 (534)
T PHA03098 364 KPGES--KWREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGGCAIYHDG 438 (534)
T ss_pred cCCCC--ceeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCceEEEECC
Confidence 77665 58764332111 00111124678999987531 1 1124778898775 4877544454444433333 44
Q ss_pred cEEEE
Q 003001 236 DTLVT 240 (859)
Q Consensus 236 ~~lv~ 240 (859)
.++++
T Consensus 439 ~iyv~ 443 (534)
T PHA03098 439 KIYVI 443 (534)
T ss_pred EEEEE
Confidence 44443
No 114
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=72.86 E-value=1.5e+02 Score=32.45 Aligned_cols=152 Identities=12% Similarity=0.156 Sum_probs=94.3
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeee-cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
+++.|++++.+..-+--|.++|+..=... +-.+.+-++..+. ...+++-++-++..+.||...|.-.=.+.......
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI- 232 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI- 232 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc-
Confidence 47789999999999999999998654332 1112232332222 33344434447789999999998776766655443
Q ss_pred CCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
.+..+.| +|.-|+. .|+....+|...++++=.|+........-.+..+.++..+| .|+.. ......|
T Consensus 233 Nsv~ffP-------~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLf-agy~d---~~c~vWD 301 (343)
T KOG0286|consen 233 NSVRFFP-------SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLF-AGYDD---FTCNVWD 301 (343)
T ss_pred ceEEEcc-------CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEE-eeecC---CceeEee
Confidence 2333333 5666774 48999999999999888887543332122232233455555 45543 2477778
Q ss_pred cCCCceee
Q 003001 209 AMNGELLN 216 (859)
Q Consensus 209 ~~tG~~~w 216 (859)
...|++.-
T Consensus 302 tlk~e~vg 309 (343)
T KOG0286|consen 302 TLKGERVG 309 (343)
T ss_pred ccccceEE
Confidence 77776653
No 115
>PLN02193 nitrile-specifier protein
Probab=72.61 E-value=1.6e+02 Score=34.59 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=70.0
Q ss_pred CCCEEEEEeCC------CEEEEEECCCCccceEEEcCCC---ccee-eeeeeecCEEEEEEcCC-----CeEEEEeCCCC
Q 003001 52 GRKRVVVSTEE------NVIASLDLRHGEIFWRHVLGIN---DVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDG 116 (859)
Q Consensus 52 ~~~~Vyvat~~------g~l~ALd~~tG~ilWR~~l~~~---~~i~-~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG 116 (859)
.++.+|+.... +.+.++|+++. .|++.-+.. ..-. ......++.++++++.+ ..+..+|+.+.
T Consensus 227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 227 IGSTLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred ECCEEEEECCCCCCCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 36778887642 57899999886 599854321 1111 11123466666666642 34788998765
Q ss_pred cEeEEEeccCccccCCcccccccccccCCCeEEEEe--C----CEEEEEEcCCCcEEEEEeccCcce-eee-eEEEeecC
Q 003001 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K----GCLHAVSSIDGEILWTRDFAAESV-EVQ-QVIQLDES 188 (859)
Q Consensus 117 ~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~----g~l~ald~~tG~~~W~~~~~~~~~-~~~-~~v~~~~~ 188 (859)
.|+.--..... ..+......... ++.+++.. + ..+.++|.++. .|+.-...+.. .++ ...-+..+
T Consensus 305 --~W~~~~~~~~~--~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~--~W~~~~~~g~~P~~R~~~~~~~~~ 377 (470)
T PLN02193 305 --KWFHCSTPGDS--FSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQD--KWTQVETFGVRPSERSVFASAAVG 377 (470)
T ss_pred --EEEeCCCCCCC--CCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCC--EEEEeccCCCCCCCcceeEEEEEC
Confidence 58753221110 000001001112 45666653 2 46889998876 48765432111 011 11112356
Q ss_pred CeEEEEEe
Q 003001 189 DQIYVVGY 196 (859)
Q Consensus 189 ~~vyvv~~ 196 (859)
+.+|+.|-
T Consensus 378 ~~iyv~GG 385 (470)
T PLN02193 378 KHIVIFGG 385 (470)
T ss_pred CEEEEECC
Confidence 78887654
No 116
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.42 E-value=1.9e+02 Score=34.38 Aligned_cols=115 Identities=13% Similarity=-0.009 Sum_probs=78.9
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcc-eeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDV-VDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~-i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
...+..++.+|.+.+++...|++-|+...+.... +....-...-+.++=++.+.++--|+..++...=.+....+.. .
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~-~ 148 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV-S 148 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc-c
Confidence 4457888999999999999999999987654422 1111001122344423335689999999999887777766543 2
Q ss_pred CcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCc
Q 003001 132 PLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAE 175 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~ 175 (859)
+.... .|+.+.+...+.+-.+|.++++++=++....+
T Consensus 149 sl~is-------~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 149 SLCIS-------PDGKILLTASRQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred eEEEc-------CCCCEEEeccceEEEEEccCceEEEEecCCCc
Confidence 22222 25667777899999999999999988876543
No 117
>PRK00178 tolB translocation protein TolB; Provisional
Probab=72.34 E-value=1.9e+02 Score=33.28 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=73.0
Q ss_pred cCCCEE-EEEeCC--CEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcC-C-CeEEEEeCCCCcEeEEEec
Q 003001 51 TGRKRV-VVSTEE--NVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD-G-STLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 51 ~~~~~V-yvat~~--g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~-g-~~v~Ald~~tG~llW~~~~ 124 (859)
+++++| |+..++ ..|+.+|.++|+.. +....++....... +.|+.+++.... | ..++.+|..+|+..- ...
T Consensus 208 pDG~~la~~s~~~~~~~l~~~~l~~g~~~--~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~ 284 (430)
T PRK00178 208 PDGKRIAYVSFEQKRPRIFVQNLDTGRRE--QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTN 284 (430)
T ss_pred CCCCEEEEEEcCCCCCEEEEEECCCCCEE--EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-ccc
Confidence 345565 444332 47899999888752 21111111111111 245556654332 2 379999999887532 111
Q ss_pred cCccccCCcccccccccccCCC-eEEEEe----CCEEEEEEcCCCcEE-EEEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDS-LILVSS----KGCLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~-~VvV~~----~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
..... ... ....++ .+++.+ ...++.+|..+|+.. .+... ... .....+..++.+++....+
T Consensus 285 ~~~~~-~~~-------~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~--~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 285 HPAID-TEP-------FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYN--ARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred CCCCc-CCe-------EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCc--cceEECCCCCEEEEEEccC
Confidence 11111 111 111133 344332 347999999888753 22211 111 1111134566666655443
Q ss_pred CceeEEEEEEcCCCce
Q 003001 199 SSQFHAYQINAMNGEL 214 (859)
Q Consensus 199 ~~~~~v~ald~~tG~~ 214 (859)
+ ...++.+|+.+|+.
T Consensus 353 ~-~~~l~~~dl~tg~~ 367 (430)
T PRK00178 353 G-NFHVAAQDLQRGSV 367 (430)
T ss_pred C-ceEEEEEECCCCCE
Confidence 2 34688899999875
No 118
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.21 E-value=59 Score=34.51 Aligned_cols=115 Identities=15% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCeEEEEeCCCC-cEeEEEeccCccccCCcccccccccccCCC-eEEEEe--CCEEEEEE--cCCCcEE-----EEEecc
Q 003001 105 GSTLRAWNLPDG-QMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVSS--KGCLHAVS--SIDGEIL-----WTRDFA 173 (859)
Q Consensus 105 g~~v~Ald~~tG-~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~~--~g~l~ald--~~tG~~~-----W~~~~~ 173 (859)
++.||.|-+..- ++.|..-.-+..+ ..+.+. ..++.. +-++-|+| ..+|... ...+..
T Consensus 138 ~g~Ly~~~~~h~v~~i~~~v~IsNgl-----------~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~ 206 (310)
T KOG4499|consen 138 GGELYSWLAGHQVELIWNCVGISNGL-----------AWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS 206 (310)
T ss_pred ccEEEEeccCCCceeeehhccCCccc-----------cccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC
Confidence 467888765322 4455433222211 223333 333332 66775555 7777642 322221
Q ss_pred --CcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCc
Q 003001 174 --AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSD 236 (859)
Q Consensus 174 --~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~ 236 (859)
.....|..+. ....+.+|+..+.|+ +|.-+|+.||+++-+.++..+. ..+|-+.|.|
T Consensus 207 ~~~e~~~PDGm~-ID~eG~L~Va~~ng~---~V~~~dp~tGK~L~eiklPt~q--itsccFgGkn 265 (310)
T KOG4499|consen 207 QPFESLEPDGMT-IDTEGNLYVATFNGG---TVQKVDPTTGKILLEIKLPTPQ--ITSCCFGGKN 265 (310)
T ss_pred CCcCCCCCCcce-EccCCcEEEEEecCc---EEEEECCCCCcEEEEEEcCCCc--eEEEEecCCC
Confidence 1222333332 246899999999987 6999999999999999765442 2346666664
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=71.74 E-value=90 Score=38.90 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=73.1
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+..++++-.|-.+|..|+...=... +-...+..+.....+..+.++..+|.|+.||..+|.+.-....-.+....
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~ 185 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF 185 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc
Confidence 45678888899999999999987654322 11122333322233445555555679999999999988766554332210
Q ss_pred C-cccccccccccCC-CeEEEE-eCCEEEEEEcCCCcEEEEEeccC
Q 003001 132 P-LLLVPTNLKVDKD-SLILVS-SKGCLHAVSSIDGEILWTRDFAA 174 (859)
Q Consensus 132 ~-~~~~~~~~~~~~~-~~VvV~-~~g~l~ald~~tG~~~W~~~~~~ 174 (859)
. ...+.- .....+ +...+. .++.|..++..+++.+...+...
T Consensus 186 ~~s~i~~~-~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~ 230 (933)
T KOG1274|consen 186 ILSRICTR-LAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL 230 (933)
T ss_pred cccceeee-eeecCCCCeEEeeccCCeEEEEccCCceeheeecccc
Confidence 0 001100 022223 455554 58999999999988888776653
No 120
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=71.65 E-value=8.2 Score=44.25 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=54.9
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
.+.+...++-+..|--.|.+||+.+=|..++......-++ +.+..++++|+.+++++.||..+|+++=++.-.
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecC-CCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 4556888888999999999999999998886652211221 234578888888889999999999977665543
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=71.28 E-value=1.3e+02 Score=33.10 Aligned_cols=136 Identities=13% Similarity=0.040 Sum_probs=73.0
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcc
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAES 176 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~ 176 (859)
-+.+++.++.||.+|...-.++=++....+.+ +..+. + +..+++. -||.|..+|..+|...=--....+
T Consensus 27 ~LLvssWDgslrlYdv~~~~l~~~~~~~~plL--~c~F~------d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~- 96 (323)
T KOG1036|consen 27 DLLVSSWDGSLRLYDVPANSLKLKFKHGAPLL--DCAFA------D-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEG- 96 (323)
T ss_pred cEEEEeccCcEEEEeccchhhhhheecCCcee--eeecc------C-CceEEEeccCceEEEEEecCCcceeeccCCCc-
Confidence 34446667799999998877777777766654 11121 1 3455554 499999999999875433222222
Q ss_pred eeeeeEE-EeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCc--eEEecCcEEEEEECCCCeEEEEEe
Q 003001 177 VEVQQVI-QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGD--VALVSSDTLVTLDTTRSILVTVSF 253 (859)
Q Consensus 177 ~~~~~~v-~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~--~~~v~~~~lv~~d~~~~~l~v~~L 253 (859)
.+++ .....+.+...+.++ .+-.+|+.+ ...+ ...+..++ |+-++++.|++.-. +....+.||
T Consensus 97 ---i~ci~~~~~~~~vIsgsWD~----~ik~wD~R~-----~~~~-~~~d~~kkVy~~~v~g~~LvVg~~-~r~v~iyDL 162 (323)
T KOG1036|consen 97 ---IRCIEYSYEVGCVISGSWDK----TIKFWDPRN-----KVVV-GTFDQGKKVYCMDVSGNRLVVGTS-DRKVLIYDL 162 (323)
T ss_pred ---eEEEEeeccCCeEEEcccCc----cEEEEeccc-----cccc-cccccCceEEEEeccCCEEEEeec-CceEEEEEc
Confidence 2232 223455666544444 366667665 1111 01111112 23334554444322 346778888
Q ss_pred ecCe
Q 003001 254 KNRK 257 (859)
Q Consensus 254 ~sg~ 257 (859)
.+-.
T Consensus 163 Rn~~ 166 (323)
T KOG1036|consen 163 RNLD 166 (323)
T ss_pred cccc
Confidence 7643
No 122
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.74 E-value=2.1e+02 Score=33.08 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=85.0
Q ss_pred ccEeEEEeccCceeee--eeeeec---cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC----c---ceeeeeeeecC
Q 003001 29 GLMDWHQQYIGKVKHA--VFHTQK---TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----D---VVDGIDIALGK 96 (859)
Q Consensus 29 G~~dW~~~~vG~~~~~--~f~~~~---~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~----~---~i~~l~~~~~~ 96 (859)
+-.-|++.. .|..+ .+.... .+.++-++..+.|+|..= .||-.-|+...... + ....+. ..++
T Consensus 73 ~G~~W~q~~--~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~IL~T--~DGG~tW~~~~~~~~~~~~~~~~l~~v~-f~~~ 147 (398)
T PLN00033 73 QSSEWEQVD--LPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLET--KDGGKTWVPRSIPSAEDEDFNYRFNSIS-FKGK 147 (398)
T ss_pred CCCccEEee--cCCCCCCceEEEEeccCCCCEEEEEcCCCEEEEE--cCCCCCceECccCcccccccccceeeeE-EECC
Confidence 445699876 33322 222221 145678888888876554 58999999853211 1 112221 2344
Q ss_pred EEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCc
Q 003001 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE 175 (859)
Q Consensus 97 ~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~ 175 (859)
..++++.. -+.+-..||-.-|+.....+......... ....++..++. ..|.++.- .+|-..|+......
T Consensus 148 ~g~~vG~~---G~il~T~DgG~tW~~~~~~~~~p~~~~~i----~~~~~~~~~ivg~~G~v~~S--~D~G~tW~~~~~~t 218 (398)
T PLN00033 148 EGWIIGKP---AILLHTSDGGETWERIPLSPKLPGEPVLI----KATGPKSAEMVTDEGAIYVT--SNAGRNWKAAVEET 218 (398)
T ss_pred EEEEEcCc---eEEEEEcCCCCCceECccccCCCCCceEE----EEECCCceEEEeccceEEEE--CCCCCCceEccccc
Confidence 44444433 25556679999998654322111111111 11113333333 45654444 46667888642111
Q ss_pred ce-------------------eeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 176 SV-------------------EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 176 ~~-------------------~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
.. ....+. ...++.+++++..|. .-.....|+..|+..
T Consensus 219 ~~~~l~~~~~s~~~g~~~y~Gsf~~v~-~~~dG~~~~vg~~G~-----~~~s~d~G~~~W~~~ 275 (398)
T PLN00033 219 VSATLNRTVSSGISGASYYTGTFSTVN-RSPDGDYVAVSSRGN-----FYLTWEPGQPYWQPH 275 (398)
T ss_pred ccccccccccccccccceeccceeeEE-EcCCCCEEEEECCcc-----EEEecCCCCcceEEe
Confidence 00 001111 124556666676662 334556888888863
No 123
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=70.59 E-value=34 Score=31.75 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=45.8
Q ss_pred CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccc
Q 003001 63 NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKV 142 (859)
Q Consensus 63 g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~ 142 (859)
+.+.-.+..++.++|......+ ......+.+..+ |.+...|. +|..+|+...... .
T Consensus 30 gnlV~~~~~~~~~vW~snt~~~--------~~~~~~l~l~~d-GnLvl~~~-~g~~vW~S~t~~~-~------------- 85 (114)
T smart00108 30 YNLILYKSSSRTVVWVANRDNP--------VSDSCTLTLQSD-GNLVLYDG-DGRVVWSSNTTGA-N------------- 85 (114)
T ss_pred EEEEEEECCCCcEEEECCCCCC--------CCCCEEEEEeCC-CCEEEEeC-CCCEEEEecccCC-C-------------
Confidence 3343344333678998654322 111134444554 46777775 5899998754311 0
Q ss_pred cCCCeEEE-EeCCEEEEEEcCCCcEEEEE
Q 003001 143 DKDSLILV-SSKGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 143 ~~~~~VvV-~~~g~l~ald~~tG~~~W~~ 170 (859)
...+++ ..+|.|..++ ..|+++|+-
T Consensus 86 --~~~~~~L~ddGnlvl~~-~~~~~~W~S 111 (114)
T smart00108 86 --GNYVLVLLDDGNLVIYD-SDGNFLWQS 111 (114)
T ss_pred --CceEEEEeCCCCEEEEC-CCCCEEeCC
Confidence 122333 4688887777 478899974
No 124
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.31 E-value=41 Score=35.06 Aligned_cols=113 Identities=12% Similarity=-0.031 Sum_probs=73.6
Q ss_pred CCCEEEEEeC-CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
.++++|+.|- +|+-.-.|++|=+++=|+..+.+ |.....++.-+..|.....++-.|++|=.+.=+.++.....
T Consensus 99 ~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge----GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~- 173 (262)
T COG3823 99 LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE----GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV- 173 (262)
T ss_pred ccceEEEEEeccceeEEEChHHhhhhcccccCCc----ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCe-
Confidence 4778999985 68888999999888888887766 22223344445556555689999998877766655543221
Q ss_pred CCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEec
Q 003001 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~ 172 (859)
++.-.+-..-.+|.+++- -..++.++++++|+++=..+.
T Consensus 174 ---pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widl 214 (262)
T COG3823 174 ---PVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDL 214 (262)
T ss_pred ---ecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEc
Confidence 111111122226788883 488999999999998633333
No 125
>PLN02193 nitrile-specifier protein
Probab=70.04 E-value=2.3e+02 Score=33.33 Aligned_cols=157 Identities=10% Similarity=0.133 Sum_probs=80.3
Q ss_pred CCCEEEEEeCC--------CEEEEEECCCCccceEEEcCCCc--ce--eeee-eeecCEEEEEEcCC-----CeEEEEeC
Q 003001 52 GRKRVVVSTEE--------NVIASLDLRHGEIFWRHVLGIND--VV--DGID-IALGKYVITLSSDG-----STLRAWNL 113 (859)
Q Consensus 52 ~~~~Vyvat~~--------g~l~ALd~~tG~ilWR~~l~~~~--~i--~~l~-~~~~~~~V~Vs~~g-----~~v~Ald~ 113 (859)
.++.||+.... +.+..+|+++. .|+..-.... .. .+.. +..++.++++++.+ +.++.||+
T Consensus 174 ~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~ 251 (470)
T PLN02193 174 VGNKIYSFGGEFTPNQPIDKHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDT 251 (470)
T ss_pred ECCEEEEECCcCCCCCCeeCcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEEC
Confidence 36778886542 34889999875 5986422110 00 1111 23566666666642 36889998
Q ss_pred CCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeC-------CEEEEEEcCCCcEEEEEeccCcce-eee-eEEE
Q 003001 114 PDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------GCLHAVSSIDGEILWTRDFAAESV-EVQ-QVIQ 184 (859)
Q Consensus 114 ~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~-------g~l~ald~~tG~~~W~~~~~~~~~-~~~-~~v~ 184 (859)
.+. .|+.-...+.. +.+..... .+..++.++|+.+ ..+.++|..+. .|+.-...... .++ ...-
T Consensus 252 ~t~--~W~~l~~~~~~--P~~R~~h~-~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~ 324 (470)
T PLN02193 252 TTN--EWKLLTPVEEG--PTPRSFHS-MAADEENVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGL 324 (470)
T ss_pred CCC--EEEEcCcCCCC--CCCccceE-EEEECCEEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEE
Confidence 864 58763221100 11111111 1122466777531 34778888764 58753321110 000 0000
Q ss_pred eecCCeEEEEEec-CCceeEEEEEEcCCCceeeeee
Q 003001 185 LDESDQIYVVGYA-GSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 185 ~~~~~~vyvv~~~-g~~~~~v~ald~~tG~~~w~~~ 219 (859)
...++.+|+++-. |...-.+.++|+.+.+ |+..
T Consensus 325 ~~~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~ 358 (470)
T PLN02193 325 EVVQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQV 358 (470)
T ss_pred EEECCcEEEEECCCCCccCceEEEECCCCE--EEEe
Confidence 1346778877643 2111247889988764 8764
No 126
>PRK00178 tolB translocation protein TolB; Provisional
Probab=69.92 E-value=2.1e+02 Score=32.86 Aligned_cols=186 Identities=14% Similarity=0.147 Sum_probs=86.8
Q ss_pred CEEEEEeCCC------EEEEEECCCCccceEEEcCCCcceeeee-eeecCEEEEEEcC--CCeEEEEeCCCCcEeEEEec
Q 003001 54 KRVVVSTEEN------VIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 54 ~~Vyvat~~g------~l~ALd~~tG~ilWR~~l~~~~~i~~l~-~~~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~ 124 (859)
..+|+.+... .|...|...+. ..+ .+.....+.... .+.++.+++++.. ...|+.||..+|+..--...
T Consensus 164 ~ia~v~~~~~~~~~~~~l~~~d~~g~~-~~~-l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~ 241 (430)
T PRK00178 164 RILYVTAERFSVNTRYTLQRSDYDGAR-AVT-LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF 241 (430)
T ss_pred eEEEEEeeCCCCCcceEEEEECCCCCC-ceE-EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC
Confidence 3466654322 47777875443 322 222222222111 1346667776643 24799999999976432222
Q ss_pred cCccccCCcccccccccccCCC-eEEE-Ee-C--CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDS-LILV-SS-K--GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~-~VvV-~~-~--g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
.... .. + ....++ .+++ .. + ..++.+|.++|+..--........ ....+..+..+++.+..++
T Consensus 242 ~g~~--~~-~------~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~---~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 242 EGLN--GA-P------AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDT---EPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred CCCc--CC-e------EECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcC---CeEECCCCCEEEEEECCCC
Confidence 1111 01 1 111133 3433 32 3 379999999887532111111111 1112335566666554332
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccCceEE-ecCcEEEEEECCCC--eEEEEEeecCe
Q 003001 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTRS--ILVTVSFKNRK 257 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~-v~~~~lv~~d~~~~--~l~v~~L~sg~ 257 (859)
...++.+|+.+|+...- . ........+.+ .+++.+++.....+ .++..++.++.
T Consensus 310 -~~~iy~~d~~~g~~~~l-t--~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 310 -KPQIYKVNVNGGRAERV-T--FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred -CceEEEEECCCCCEEEe-e--cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 23688889888874311 1 11111111111 23445555543333 46777777765
No 127
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=69.85 E-value=77 Score=34.86 Aligned_cols=181 Identities=15% Similarity=0.258 Sum_probs=99.0
Q ss_pred ccccc-EeEEEeccCceeeeeeeee----------ccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeee-ee
Q 003001 26 DQVGL-MDWHQQYIGKVKHAVFHTQ----------KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGID-IA 93 (859)
Q Consensus 26 dq~G~-~dW~~~~vG~~~~~~f~~~----------~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~-~~ 93 (859)
.|.|+ ..|+.+. |.-. ..|++. +.++..+.-++-+-.+.---.++|+.+=...=-.. -+.-.. ..
T Consensus 282 sqDGkIKvWri~t-G~Cl-RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~ 358 (508)
T KOG0275|consen 282 SQDGKIKVWRIET-GQCL-RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTD 358 (508)
T ss_pred CcCCcEEEEEEec-chHH-HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcC
Confidence 56788 7899875 3211 112211 11234466666666666667788887644321111 011111 12
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc-CCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEe
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS-KPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls-~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~ 171 (859)
.|..++..++ +++|+.|+..+++-+=.+...+...+ ......| -.....+| -...+++..+ -.|+++-++.
T Consensus 359 dG~~iisaSs-DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P-----Knpeh~iVCNrsntv~imn-~qGQvVrsfs 431 (508)
T KOG0275|consen 359 DGHHIISASS-DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP-----KNPEHFIVCNRSNTVYIMN-MQGQVVRSFS 431 (508)
T ss_pred CCCeEEEecC-CccEEEecCcchhhhhhccCCCCcccceeEEEcC-----CCCceEEEEcCCCeEEEEe-ccceEEeeec
Confidence 3555666555 46999999999988766665443321 1111222 11223334 3467777777 4677777775
Q ss_pred ccCc-ceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003001 172 FAAE-SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 172 ~~~~-~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v 220 (859)
...- .-....+..+..+.-+|.+|-++ ++++++..+|..-....+
T Consensus 432 SGkREgGdFi~~~lSpkGewiYcigED~----vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKGEWIYCIGEDG----VLYCFSVLSGKLERTLPV 477 (508)
T ss_pred cCCccCCceEEEEecCCCcEEEEEccCc----EEEEEEeecCceeeeeec
Confidence 5421 11122233345677788887666 689999989887655543
No 128
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=69.21 E-value=32 Score=32.05 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=46.1
Q ss_pred EEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccc
Q 003001 64 VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVD 143 (859)
Q Consensus 64 ~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~ 143 (859)
.+.-.+...+.++|......+ ......+.+..+| .++.+|. +|.++|+..... ..
T Consensus 32 nlv~~~~~~~~~vW~snt~~~--------~~~~~~l~l~~dG-nLvl~~~-~g~~vW~S~~~~-~~-------------- 86 (116)
T cd00028 32 NLILYKGSSRTVVWVANRDNP--------SGSSCTLTLQSDG-NLVIYDG-SGTVVWSSNTTR-VN-------------- 86 (116)
T ss_pred EEEEEeCCCCeEEEECCCCCC--------CCCCEEEEEecCC-CeEEEcC-CCcEEEEecccC-CC--------------
Confidence 333333323678998665432 1112234445544 6877776 689999866543 10
Q ss_pred CCCeE-EEEeCCEEEEEEcCCCcEEEEE
Q 003001 144 KDSLI-LVSSKGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 144 ~~~~V-vV~~~g~l~ald~~tG~~~W~~ 170 (859)
...+ .+..+|.+..++. +|+++|+-
T Consensus 87 -~~~~~~L~ddGnlvl~~~-~~~~~W~S 112 (116)
T cd00028 87 -GNYVLVLLDDGNLVLYDS-DGNFLWQS 112 (116)
T ss_pred -CceEEEEeCCCCEEEECC-CCCEEEcC
Confidence 1222 3346888888875 58999974
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=67.41 E-value=1.1e+02 Score=35.07 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=64.0
Q ss_pred cccEeEEEeccCceeee-----------eeeeeccCCCEEEEEeCCCEEEEEECC---CCccceEEEcCCCcceeeeeee
Q 003001 28 VGLMDWHQQYIGKVKHA-----------VFHTQKTGRKRVVVSTEENVIASLDLR---HGEIFWRHVLGINDVVDGIDIA 93 (859)
Q Consensus 28 ~G~~dW~~~~vG~~~~~-----------~f~~~~~~~~~Vyvat~~g~l~ALd~~---tG~ilWR~~l~~~~~i~~l~~~ 93 (859)
.-.+.|--.. |+|+.. .|+. .....+..++.++.|+-.|.+ .-...|+..-+-+. + .. -+
T Consensus 266 ~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~--~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk-v-~w-~~ 339 (463)
T KOG0270|consen 266 KTVKLWDVDT-GKPKSSITHHGKKVQTLEWHP--YEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK-V-AW-DP 339 (463)
T ss_pred ceEEEEEcCC-CCcceehhhcCCceeEEEecC--CCceEEEeccccceEEeeeccCccccCceEEeccceEE-E-Ee-cC
Confidence 3457888765 666532 2221 123457788889999999888 55677887543321 1 11 12
Q ss_pred ecCEEEEEEcCCCeEEEEeCC-CCcEeEEEeccCccc
Q 003001 94 LGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRGSKH 129 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~-tG~llW~~~~~~~~l 129 (859)
......++++++|.||.+|+. .|+++|+........
T Consensus 340 ~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I 376 (463)
T KOG0270|consen 340 HSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI 376 (463)
T ss_pred CCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc
Confidence 455677778888899999986 689999999887654
No 130
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=67.19 E-value=65 Score=36.49 Aligned_cols=92 Identities=13% Similarity=0.202 Sum_probs=58.5
Q ss_pred EEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccC
Q 003001 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAA 174 (859)
Q Consensus 97 ~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~ 174 (859)
.++.-++.+..|..||..||+-+=+...+.-.. .+ ....+|..++. .|.+++.+|..+|+++|+-....
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-----S~----sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-----SM----SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeecCCCCeEE-----EE----EeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 344334556799999999999888866433222 11 22335667774 49999999999999999984333
Q ss_pred cceeeeeEEEeecCCeEEEEEecCC
Q 003001 175 ESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 175 ~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
+.- +.+.+. ..++.++..|+...
T Consensus 216 G~k-~~Raif-l~~g~i~tTGfsr~ 238 (472)
T KOG0303|consen 216 GAK-PARAIF-LASGKIFTTGFSRM 238 (472)
T ss_pred CCC-cceeEE-eccCceeeeccccc
Confidence 332 334432 24444666666553
No 131
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=66.93 E-value=2.3e+02 Score=32.14 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=28.4
Q ss_pred CCCEEEEEeCC------------CEEEEEECCCCccceEEEcCC-Ccceeeee-ee-ecCEEEEEEcC
Q 003001 52 GRKRVVVSTEE------------NVIASLDLRHGEIFWRHVLGI-NDVVDGID-IA-LGKYVITLSSD 104 (859)
Q Consensus 52 ~~~~Vyvat~~------------g~l~ALd~~tG~ilWR~~l~~-~~~i~~l~-~~-~~~~~V~Vs~~ 104 (859)
-++.||+.... +.+.++|+.+. .|+..-.. +....+.. .. .++.++++||.
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCCCCCCCcccceEEEEeeCCEEEEECCC
Confidence 36778887542 34788898875 49885421 21111111 22 45666666664
No 132
>PRK05137 tolB translocation protein TolB; Provisional
Probab=66.70 E-value=2.5e+02 Score=32.47 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=53.4
Q ss_pred ecCEEEEEEc--CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCC-eEEE-Ee---CCEEEEEEcCCCcE
Q 003001 94 LGKYVITLSS--DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILV-SS---KGCLHAVSSIDGEI 166 (859)
Q Consensus 94 ~~~~~V~Vs~--~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV-~~---~g~l~ald~~tG~~ 166 (859)
.|+.+++++. .+..|+.||..+|+..=-........ . + ....++ .+++ .. +..++.+|.++|+.
T Consensus 212 DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~--~-~------~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 212 NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF--A-P------RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT 282 (435)
T ss_pred CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc--C-c------EECCCCCEEEEEEecCCCceEEEEECCCCce
Confidence 4666777753 23689999999987531111111111 1 1 112244 3333 32 34699999988875
Q ss_pred EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCce
Q 003001 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (859)
Q Consensus 167 ~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~ 214 (859)
.=-........ ....+..+..+++.+..++ ...++.+|+.+|+.
T Consensus 283 ~~Lt~~~~~~~---~~~~spDG~~i~f~s~~~g-~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 283 TRLTDSPAIDT---SPSYSPDGSQIVFESDRSG-SPQLYVMNADGSNP 326 (435)
T ss_pred EEccCCCCccC---ceeEcCCCCEEEEEECCCC-CCeEEEEECCCCCe
Confidence 31111111111 1111334555555443322 23578888877754
No 133
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=65.79 E-value=2.4e+02 Score=31.97 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=71.0
Q ss_pred cCCCEEEEEeCC---CEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcC--CCeEEEEeCCCCcEeEEEec
Q 003001 51 TGRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 51 ~~~~~Vyvat~~---g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~ 124 (859)
++++.++..+.. ..|+.+|.++|+..--...... ...... +.++.+++.... ...++.||..+|... .+
T Consensus 199 pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~--~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---~l 273 (417)
T TIGR02800 199 PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGM--NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---RL 273 (417)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCC--ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---EC
Confidence 445555555432 5799999999975432222211 111111 234455554332 246999999888642 22
Q ss_pred cCccccCCcccccccccccCCC-eEEEEe----CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDS-LILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~-~VvV~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
..... ....+ ....++ .++..+ ...++.+|..+|+..--. ..... ......+..+..+++....+
T Consensus 274 ~~~~~---~~~~~---~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~-~~~~~--~~~~~~spdg~~i~~~~~~~- 343 (417)
T TIGR02800 274 TNGPG---IDTEP---SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT-FRGGY--NASPSWSPDGDLIAFVHREG- 343 (417)
T ss_pred CCCCC---CCCCE---EECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCC--ccCeEECCCCCEEEEEEccC-
Confidence 11100 00000 111133 343332 237999998888743211 11111 11121123445555544332
Q ss_pred ceeEEEEEEcCCCce
Q 003001 200 SQFHAYQINAMNGEL 214 (859)
Q Consensus 200 ~~~~v~ald~~tG~~ 214 (859)
...+++.+|+.+|..
T Consensus 344 ~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 344 GGFNIAVMDLDGGGE 358 (417)
T ss_pred CceEEEEEeCCCCCe
Confidence 235688889888754
No 134
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=65.43 E-value=2e+02 Score=34.89 Aligned_cols=151 Identities=11% Similarity=0.083 Sum_probs=84.6
Q ss_pred CCCEEEEEeCCC-------EEEEEECCCCccceEEEcCCCcc-e-eeeeeeecCEEEEEEcCCC-----eEEEEeCCCCc
Q 003001 52 GRKRVVVSTEEN-------VIASLDLRHGEIFWRHVLGINDV-V-DGIDIALGKYVITLSSDGS-----TLRAWNLPDGQ 117 (859)
Q Consensus 52 ~~~~Vyvat~~g-------~l~ALd~~tG~ilWR~~l~~~~~-i-~~l~~~~~~~~V~Vs~~g~-----~v~Ald~~tG~ 117 (859)
-++.||+.++.+ .+...|+++++ |+..-+.... . .++ ...++.+++|||.++ .+-.||+. +
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v-~~l~g~iYavGG~dg~~~l~svE~YDp~--~ 405 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGV-AVLDGKLYAVGGFDGEKSLNSVECYDPV--T 405 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCcccccee-EEECCEEEEEeccccccccccEEEecCC--C
Confidence 377899876543 57888999998 9985433311 1 123 245777777777542 36677764 3
Q ss_pred EeEEEeccCccccCCcccccccccccCCCeEEEEeC--------CEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecC
Q 003001 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDES 188 (859)
Q Consensus 118 llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~--------g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~ 188 (859)
-.|+.-.+-... ....+ ....++.+++.++ ..+.++|+.++ .|+...+-... ....+ ..-+
T Consensus 406 ~~W~~va~m~~~---r~~~g---v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~--a~~~ 475 (571)
T KOG4441|consen 406 NKWTPVAPMLTR---RSGHG---VAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGV--AVLN 475 (571)
T ss_pred CcccccCCCCcc---eeeeE---EEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceE--EEEC
Confidence 457765432211 00111 2222577777532 46788888775 58765542211 01112 3568
Q ss_pred CeEEEEEecCCc--eeEEEEEEcCCCceeeeee
Q 003001 189 DQIYVVGYAGSS--QFHAYQINAMNGELLNHET 219 (859)
Q Consensus 189 ~~vyvv~~~g~~--~~~v~ald~~tG~~~w~~~ 219 (859)
+.+|++|...+. --.+.++|+.+-+ |..-
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v 506 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQ--WTMV 506 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCc--eeEc
Confidence 899988754321 1237788887653 5553
No 135
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=65.43 E-value=2.5e+02 Score=32.02 Aligned_cols=190 Identities=11% Similarity=0.189 Sum_probs=103.7
Q ss_pred CCCEEEEEeCC-CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcC---CCeEEEEeCCCCcEeEEEeccCc
Q 003001 52 GRKRVVVSTEE-NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD---GSTLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 52 ~~~~Vyvat~~-g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~---g~~v~Ald~~tG~llW~~~~~~~ 127 (859)
.++++|+.+.+ +.+..+|.++=++.=....+.. ..++.....+..++|+.. .+.+..+|..++++.=+......
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~--P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG--PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeeeccC--CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence 46779998865 8899999544333222222211 112322234445555432 47899999999988755444321
Q ss_pred cccCCcccccccccccCC-CeEEEEe--CCEEEEEEcCCCcEEEEEeccCcc----eeeeeEEEeecCCeEEEEEecCCc
Q 003001 128 KHSKPLLLVPTNLKVDKD-SLILVSS--KGCLHAVSSIDGEILWTRDFAAES----VEVQQVIQLDESDQIYVVGYAGSS 200 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~~-~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~----~~~~~~v~~~~~~~vyvv~~~g~~ 200 (859)
.. . . ..+.+ ..+++.. ++.+..+| .++..+|+ ...... ..|..+.-..++..+|+.... ..
T Consensus 162 P~--~--~-----a~~p~g~~vyv~~~~~~~v~vi~-~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~ 229 (381)
T COG3391 162 PT--G--V-----AVDPDGNKVYVTNSDDNTVSVID-TSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SG 229 (381)
T ss_pred cc--e--E-----EECCCCCeEEEEecCCCeEEEEe-CCCcceec-cccccccccCCCCceEEECCCCCEEEEEecc-CC
Confidence 11 1 1 22223 4577764 89999999 56666775 332111 123344323466668875433 22
Q ss_pred eeEEEEEEcCCCceeeee-eeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 201 QFHAYQINAMNGELLNHE-TAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 201 ~~~v~ald~~tG~~~w~~-~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
...+..+|..+|...+.. .+... ...+ ..+. .+..++..+...+.+.+++..+..
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~-v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRG-VAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCc-eeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 246889999999999873 32221 1111 1111 233334444445677777776655
No 136
>PLN02153 epithiospecifier protein
Probab=65.39 E-value=2.3e+02 Score=31.55 Aligned_cols=197 Identities=12% Similarity=0.094 Sum_probs=96.5
Q ss_pred CCCEEEEEeCC--------CEEEEEECCCCccceEEEcCCCc--ce--eeee-eeecCEEEEEEcCC-----CeEEEEeC
Q 003001 52 GRKRVVVSTEE--------NVIASLDLRHGEIFWRHVLGIND--VV--DGID-IALGKYVITLSSDG-----STLRAWNL 113 (859)
Q Consensus 52 ~~~~Vyvat~~--------g~l~ALd~~tG~ilWR~~l~~~~--~i--~~l~-~~~~~~~V~Vs~~g-----~~v~Ald~ 113 (859)
.++.||+.... +.+..+|+.+. .|+..-.... .. .+.. +..++.+++++|.. ..+..||+
T Consensus 31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred ECCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEEC
Confidence 36788886442 36899999886 4986532211 11 0111 23577777777631 25888998
Q ss_pred CCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeC-------------CEEEEEEcCCCcEEEEEeccCcce-ee
Q 003001 114 PDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------------GCLHAVSSIDGEILWTRDFAAESV-EV 179 (859)
Q Consensus 114 ~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~-------------g~l~ald~~tG~~~W~~~~~~~~~-~~ 179 (859)
.+ ..|+.--.-.....+.+.... ..+..++.++|+++ ..+.++|.++. .|+.-...+.. .+
T Consensus 109 ~t--~~W~~~~~~~~~~~p~~R~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~ 183 (341)
T PLN02153 109 VK--NEWTFLTKLDEEGGPEARTFH-SMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEK 183 (341)
T ss_pred CC--CEEEEeccCCCCCCCCCceee-EEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCC
Confidence 75 458753211000001111111 11222567777631 14778888765 58863321110 01
Q ss_pred ee-EEEeecCCeEEEEEec------CCc----eeEEEEEEcCCCceeeeeeee---cccCccC-ceEEecCcEEEEEECC
Q 003001 180 QQ-VIQLDESDQIYVVGYA------GSS----QFHAYQINAMNGELLNHETAA---FSGGFVG-DVALVSSDTLVTLDTT 244 (859)
Q Consensus 180 ~~-~v~~~~~~~vyvv~~~------g~~----~~~v~ald~~tG~~~w~~~v~---~~~~~s~-~~~~v~~~~lv~~d~~ 244 (859)
+. ..-+..++.+|+++-. |+. .-.+.++|+.+.+ |+..-. .|..... .+.++++.++++.-..
T Consensus 184 r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~ 261 (341)
T PLN02153 184 RGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTEVETTGAKPSARSVFAHAVVGKYIIIFGGEV 261 (341)
T ss_pred CCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEeccccCCCCCCcceeeeEEECCEEEEECccc
Confidence 00 0012357788886532 110 1247888887644 776321 2332222 2334455555543210
Q ss_pred -------------CCeEEEEEeecCe
Q 003001 245 -------------RSILVTVSFKNRK 257 (859)
Q Consensus 245 -------------~~~l~v~~L~sg~ 257 (859)
...+++.++.+.+
T Consensus 262 ~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 262 WPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CCccccccccccccccEEEEEcCccE
Confidence 1246777776655
No 137
>PRK13684 Ycf48-like protein; Provisional
Probab=65.11 E-value=2.3e+02 Score=31.62 Aligned_cols=179 Identities=15% Similarity=0.226 Sum_probs=88.9
Q ss_pred ccccccccccEeEEEeccCc--eeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCE
Q 003001 21 LSLYEDQVGLMDWHQQYIGK--VKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKY 97 (859)
Q Consensus 21 ~Al~edq~G~~dW~~~~vG~--~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~ 97 (859)
..+|..+.|-..|+....+. +... +.--...++.++++++.|.|+.-+ ||-.-|+...... ..+.......++.
T Consensus 109 g~i~~S~DgG~tW~~~~~~~~~~~~~-~~i~~~~~~~~~~~g~~G~i~~S~--DgG~tW~~~~~~~~g~~~~i~~~~~g~ 185 (334)
T PRK13684 109 SLLLHTTDGGKNWTRIPLSEKLPGSP-YLITALGPGTAEMATNVGAIYRTT--DGGKNWEALVEDAAGVVRNLRRSPDGK 185 (334)
T ss_pred ceEEEECCCCCCCeEccCCcCCCCCc-eEEEEECCCcceeeeccceEEEEC--CCCCCceeCcCCCcceEEEEEECCCCe
Confidence 45777777778898764331 1111 111112345578888888776554 7888899754332 2222332122334
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEec-cCc
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF-AAE 175 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~-~~~ 175 (859)
.++++..| .++.- ..+|..-|+..-.... .....+ ....++.+++. .+|.+ .+...+|-.-|+... +..
T Consensus 186 ~v~~g~~G-~i~~s-~~~gg~tW~~~~~~~~--~~l~~i----~~~~~g~~~~vg~~G~~-~~~s~d~G~sW~~~~~~~~ 256 (334)
T PRK13684 186 YVAVSSRG-NFYST-WEPGQTAWTPHQRNSS--RRLQSM----GFQPDGNLWMLARGGQI-RFNDPDDLESWSKPIIPEI 256 (334)
T ss_pred EEEEeCCc-eEEEE-cCCCCCeEEEeeCCCc--ccceee----eEcCCCCEEEEecCCEE-EEccCCCCCccccccCCcc
Confidence 44445544 45432 2467788976533211 111111 11124545554 45554 343356667888532 211
Q ss_pred --ceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeee
Q 003001 176 --SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 176 --~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (859)
...+..+. ...++.+|+++..|. ++ .. .+|-..|+.
T Consensus 257 ~~~~~l~~v~-~~~~~~~~~~G~~G~----v~-~S-~d~G~tW~~ 294 (334)
T PRK13684 257 TNGYGYLDLA-YRTPGEIWAGGGNGT----LL-VS-KDGGKTWEK 294 (334)
T ss_pred ccccceeeEE-EcCCCCEEEEcCCCe----EE-Ee-CCCCCCCeE
Confidence 11122222 123667888777662 22 33 455567777
No 138
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=65.10 E-value=1.8e+02 Score=30.40 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=82.0
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccc-CCCeEEEEeCCEEEEEEcCCCcEEEEEecc
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVD-KDSLILVSSKGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~-~~~~VvV~~~g~l~ald~~tG~~~W~~~~~ 173 (859)
.+.++++...++.|+.||+.+|+.. ......+. + + ... .++.+++...+.+..+|..+|+..--....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~~---G--~-----~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGPN---G--M-----AFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSSEE---E--E-----EEECTTSEEEEEETTCEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCCCc---e--E-----EEEccCCEEEEEEcCceEEEecCCCcEEEEeecc
Confidence 4455565556779999999888663 22222221 1 1 112 257888877666777799999765544442
Q ss_pred --C-cceeeeeEEEeecCCeEEEEEecCC---ce--eEEEEEEcCCCceeee-eeeecccCccCceEEecCcEEEEEECC
Q 003001 174 --A-ESVEVQQVIQLDESDQIYVVGYAGS---SQ--FHAYQINAMNGELLNH-ETAAFSGGFVGDVALVSSDTLVTLDTT 244 (859)
Q Consensus 174 --~-~~~~~~~~v~~~~~~~vyvv~~~g~---~~--~~v~ald~~tG~~~w~-~~v~~~~~~s~~~~~v~~~~lv~~d~~ 244 (859)
. +...+--+. ...++.+|+...... .. ..++.+++. |+...- ..+..|.++ ++-..+..+++.|..
T Consensus 80 ~~~~~~~~~ND~~-vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi---~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 80 DGGVPFNRPNDVA-VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGI---AFSPDGKTLYVADSF 154 (246)
T ss_dssp TTCSCTEEEEEEE-E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEE---EEETTSSEEEEEETT
T ss_pred CCCcccCCCceEE-EcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccce---EECCcchheeecccc
Confidence 1 222222222 245677887655331 11 579999988 664322 223333322 222244567788888
Q ss_pred CCeEEEEEeec
Q 003001 245 RSILVTVSFKN 255 (859)
Q Consensus 245 ~~~l~v~~L~s 255 (859)
++.++..++..
T Consensus 155 ~~~i~~~~~~~ 165 (246)
T PF08450_consen 155 NGRIWRFDLDA 165 (246)
T ss_dssp TTEEEEEEEET
T ss_pred cceeEEEeccc
Confidence 88899998874
No 139
>PLN02153 epithiospecifier protein
Probab=64.49 E-value=2.4e+02 Score=31.42 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=77.5
Q ss_pred CCCEEEEEeCC------CEEEEEECCCCccceEEEcCC-----Ccc-eeeeeeeecCEEEEEEcCC-----------CeE
Q 003001 52 GRKRVVVSTEE------NVIASLDLRHGEIFWRHVLGI-----NDV-VDGIDIALGKYVITLSSDG-----------STL 108 (859)
Q Consensus 52 ~~~~Vyvat~~------g~l~ALd~~tG~ilWR~~l~~-----~~~-i~~l~~~~~~~~V~Vs~~g-----------~~v 108 (859)
.++.||+-... +.+..+|+++. .|+..-.. +.. .....+..++.+++++|.. ..|
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 36778877542 46889999875 59864221 111 1111123456666666632 247
Q ss_pred EEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeC---------------CEEEEEEcCCCcEEEEEecc
Q 003001 109 RAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK---------------GCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 109 ~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~---------------g~l~ald~~tG~~~W~~~~~ 173 (859)
..||+.+. .|+.--..... ..+..... ....++.++++.+ ..+.++|..+. .|+.-..
T Consensus 162 ~~yd~~~~--~W~~l~~~~~~--~~~r~~~~-~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~--~W~~~~~ 234 (341)
T PLN02153 162 EAYNIADG--KWVQLPDPGEN--FEKRGGAG-FAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG--KWTEVET 234 (341)
T ss_pred EEEECCCC--eEeeCCCCCCC--CCCCCcce-EEEECCeEEEEeccccccccCCccceecCceEEEEcCCC--cEEeccc
Confidence 88998765 58853221100 00000000 1122566766421 35788887764 4876432
Q ss_pred Ccce-eee-eEEEeecCCeEEEEEecC-----------CceeEEEEEEcCCCceeeee
Q 003001 174 AESV-EVQ-QVIQLDESDQIYVVGYAG-----------SSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 174 ~~~~-~~~-~~v~~~~~~~vyvv~~~g-----------~~~~~v~ald~~tG~~~w~~ 218 (859)
.+.. .++ ...-...++.+|++|-.. ...-.++++|+.+. .|+.
T Consensus 235 ~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~--~W~~ 290 (341)
T PLN02153 235 TGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL--VWEK 290 (341)
T ss_pred cCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc--EEEe
Confidence 1110 000 111124578888876531 00114778887644 5764
No 140
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=64.05 E-value=2.1e+02 Score=30.75 Aligned_cols=61 Identities=15% Similarity=0.291 Sum_probs=37.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP 114 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~ 114 (859)
++.-.|+++|+|.+.--|.++ +.=++.+....++..+-+.-.+.-++++...|.+|.||..
T Consensus 94 dgrWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred cCeEEEecCCCceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 355599999999999999887 2222333222223222112344555556667899999984
No 141
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=63.68 E-value=58 Score=37.64 Aligned_cols=141 Identities=11% Similarity=0.163 Sum_probs=85.4
Q ss_pred EEEE-EcCCCeEEEEeCCC-CcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEecc
Q 003001 98 VITL-SSDGSTLRAWNLPD-GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 98 ~V~V-s~~g~~v~Ald~~t-G~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~ 173 (859)
-+++ ++.++.|..||.-+ |+.+=.+......+ +++.. ..++.-|.. .|+.+.-.|.++|+++=++...
T Consensus 228 hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~V-rd~~~-------s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~ 299 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPV-RDASF-------NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD 299 (503)
T ss_pred eEEEecCCCceEEEEEEecCcceehhhhcchhhh-hhhhc-------cccCCeeeeeecceeeeeeccccceEEEEEecC
Confidence 3444 45578999999986 88888877766544 22222 224444442 4999999999999999988776
Q ss_pred CcceeeeeEEEe-ecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCc-EEEEEECCCCeEEEE
Q 003001 174 AESVEVQQVIQL-DESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSD-TLVTLDTTRSILVTV 251 (859)
Q Consensus 174 ~~~~~~~~~v~~-~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~-~lv~~d~~~~~l~v~ 251 (859)
.... ++-. ..+..+|++|...+ ++..+|..+|+++-++.-.+.... +..++.++ .++ ..++.+++.+-
T Consensus 300 ~~~~----cvkf~pd~~n~fl~G~sd~---ki~~wDiRs~kvvqeYd~hLg~i~--~i~F~~~g~rFi-ssSDdks~riW 369 (503)
T KOG0282|consen 300 KVPT----CVKFHPDNQNIFLVGGSDK---KIRQWDIRSGKVVQEYDRHLGAIL--DITFVDEGRRFI-SSSDDKSVRIW 369 (503)
T ss_pred CCce----eeecCCCCCcEEEEecCCC---cEEEEeccchHHHHHHHhhhhhee--eeEEccCCceEe-eeccCccEEEE
Confidence 4322 2211 23446676665543 699999999999887743222211 33344333 333 33344566555
Q ss_pred EeecC
Q 003001 252 SFKNR 256 (859)
Q Consensus 252 ~L~sg 256 (859)
....+
T Consensus 370 e~~~~ 374 (503)
T KOG0282|consen 370 ENRIP 374 (503)
T ss_pred EcCCC
Confidence 54433
No 142
>PRK02888 nitrous-oxide reductase; Validated
Probab=63.07 E-value=1.9e+02 Score=35.24 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=79.7
Q ss_pred CEEEEEeC-CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc----CCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 54 KRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----DGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 54 ~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~----~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
+.++..++ .|.+.++|+++-++.|+..++.. ........++..++++. .|..+.-.++.+-. |-..+.-..
T Consensus 205 k~l~~~~ey~~~vSvID~etmeV~~qV~Vdgn--pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni~~ 280 (635)
T PRK02888 205 KDLDDPKKYRSLFTAVDAETMEVAWQVMVDGN--LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNIAR 280 (635)
T ss_pred CEeecccceeEEEEEEECccceEEEEEEeCCC--cccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEchHH
Confidence 34555544 48999999999999999998765 22222223555666653 25567777665444 444433221
Q ss_pred ccCCcccccccccccCCCeEEEEeCCEEEEEEcCC----C-cEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSID----G-EILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~t----G-~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
. ...+ . ++......+++|..+|..+ | +++=....+. . |-.+.-+.++..+|+.+--.. .
T Consensus 281 i---ea~v------k-dGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK--s-PHGV~vSPDGkylyVanklS~---t 344 (635)
T PRK02888 281 I---EEAV------K-AGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPK--N-PHGVNTSPDGKYFIANGKLSP---T 344 (635)
T ss_pred H---HHhh------h-CCCEEEECCCEEEEEECCccccCCcceEEEEECCC--C-ccceEECCCCCEEEEeCCCCC---c
Confidence 1 0111 1 3332223678899999988 4 3333333332 1 334432345555665443222 4
Q ss_pred EEEEEcCCCceee
Q 003001 204 AYQINAMNGELLN 216 (859)
Q Consensus 204 v~ald~~tG~~~w 216 (859)
+..+|..+-+.+-
T Consensus 345 VSVIDv~k~k~~~ 357 (635)
T PRK02888 345 VTVIDVRKLDDLF 357 (635)
T ss_pred EEEEEChhhhhhh
Confidence 8888988866543
No 143
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=62.96 E-value=3e+02 Score=32.05 Aligned_cols=189 Identities=14% Similarity=0.133 Sum_probs=106.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceee-eeee-ecCEEEEEEcCCCeEEEEeC-----C-----------
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDG-IDIA-LGKYVITLSSDGSTLRAWNL-----P----------- 114 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~-l~~~-~~~~~V~Vs~~g~~v~Ald~-----~----------- 114 (859)
.+.+.|-+-+|.|.-++.+. ..-++.++.-. +.+ +... ..+-.|+.++ ...|.++.= .
T Consensus 145 ~~~IcVQS~DG~L~~feqe~--~~f~~~lp~~l-lPgPl~Y~~~tDsfvt~ss-s~~l~~Yky~~La~~s~~~~~~~~~~ 220 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQES--FAFSRFLPDFL-LPGPLCYCPRTDSFVTASS-SWTLECYKYQDLASASEASSRQSGTE 220 (418)
T ss_pred ceEEEEEecCceEEEEeCCc--EEEEEEcCCCC-CCcCeEEeecCCEEEEecC-ceeEEEecHHHhhhcccccccccccc
Confidence 56799999999999998643 45566665431 111 1011 2333444333 345665532 0
Q ss_pred ----CC---cEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCcce--eeeeEEEe
Q 003001 115 ----DG---QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESV--EVQQVIQL 185 (859)
Q Consensus 115 ----tG---~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~--~~~~~v~~ 185 (859)
+| ..-|++.+..+.+ +..++.. ......++|++...|++++ .+|+++|..+...... -++.+...
T Consensus 221 ~~~~~~k~l~~dWs~nlGE~~l--~i~v~~~---~~~~~~IvvLger~Lf~l~-~~G~l~~~krLd~~p~~~~~Y~~~~~ 294 (418)
T PF14727_consen 221 QDISSGKKLNPDWSFNLGEQAL--DIQVVRF---SSSESDIVVLGERSLFCLK-DNGSLRFQKRLDYNPSCFCPYRVPWY 294 (418)
T ss_pred ccccccccccceeEEECCceeE--EEEEEEc---CCCCceEEEEecceEEEEc-CCCeEEEEEecCCceeeEEEEEeecc
Confidence 12 4579999887765 2333321 1124578899999999999 4899999999864332 23333211
Q ss_pred ecCC--eEEEEEecCCceeEEEEEEcCCCceeeeeeeec-ccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 186 DESD--QIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 186 ~~~~--~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~-~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..++ ..++++-..+ .+.++ ++.+.+|..++.. |-.++-..+---.+.++.++. +|.|.+.=|+|..
T Consensus 295 ~~~~~~~~llV~t~t~-~LlVy----~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~-~G~L~v~YLGTdP 363 (418)
T PF14727_consen 295 NEPSTRLNLLVGTHTG-TLLVY----EDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSD-EGQLSVSYLGTDP 363 (418)
T ss_pred cCCCCceEEEEEecCC-eEEEE----eCCeEEEecCCCCCCEEEEecccCCCCceEEEEcC-CCcEEEEEeCCCC
Confidence 1222 2233333332 23333 4788999997622 111110000001468888875 5999999999976
No 144
>PRK04043 tolB translocation protein TolB; Provisional
Probab=62.29 E-value=3e+02 Score=31.89 Aligned_cols=147 Identities=9% Similarity=0.021 Sum_probs=72.5
Q ss_pred cCCCE-EEEE-eC--CCEEEEEECCCCccceEEEcCCCcceeeee-eeecCEEEEEEc-C-CCeEEEEeCCCCcEeEEEe
Q 003001 51 TGRKR-VVVS-TE--ENVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSS-D-GSTLRAWNLPDGQMVWESF 123 (859)
Q Consensus 51 ~~~~~-Vyva-t~--~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~-~~~~~~~V~Vs~-~-g~~v~Ald~~tG~llW~~~ 123 (859)
+++++ +|.. .+ ...|+.+|..+|+..- ....++...... .+.|..+++... . ...++.+|..+|+. +.-
T Consensus 197 pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~--~~L 272 (419)
T PRK04043 197 NKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL--TQI 272 (419)
T ss_pred CCCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE--EEc
Confidence 44553 5543 33 3679999999986522 112221111111 124556665433 2 35799999888863 221
Q ss_pred ccCccccCCcccccccccccCCC-eEEEEeC----CEEEEEEcCCCcE-EEEEeccCcceeeeeEEEeecCCeEEEEEec
Q 003001 124 LRGSKHSKPLLLVPTNLKVDKDS-LILVSSK----GCLHAVSSIDGEI-LWTRDFAAESVEVQQVIQLDESDQIYVVGYA 197 (859)
Q Consensus 124 ~~~~~ls~~~~~~~~~~~~~~~~-~VvV~~~----g~l~ald~~tG~~-~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~ 197 (859)
...+........ ..++ .++..++ ..|+.+|..+|+. +-++.. .... .. +..+..+.++...
T Consensus 273 T~~~~~d~~p~~-------SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g---~~~~-~~--SPDG~~Ia~~~~~ 339 (419)
T PRK04043 273 TNYPGIDVNGNF-------VEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG---KNNS-SV--STYKNYIVYSSRE 339 (419)
T ss_pred ccCCCccCccEE-------CCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC---CcCc-eE--CCCCCEEEEEEcC
Confidence 111111011111 2234 3444332 3799999999986 333221 1111 11 3455555544443
Q ss_pred CC-----ceeEEEEEEcCCCce
Q 003001 198 GS-----SQFHAYQINAMNGEL 214 (859)
Q Consensus 198 g~-----~~~~v~ald~~tG~~ 214 (859)
.. ....++.+|+.+|+.
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe
Confidence 21 114688889988864
No 145
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=62.22 E-value=2.5e+02 Score=30.98 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=36.5
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE---eCCEEEEEEcC
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS---SKGCLHAVSSI 162 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~---~~g~l~ald~~ 162 (859)
++..++-.+.+.+|++||+++|+..-+.+....-. ..+. + ...+..+|. .||++...|..
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~v----Ns~~---p-~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFV----NSLD---P-SRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhcccccee----eecC---c-cccCCeEEEecCCCceEEEEeec
Confidence 33344434456799999999999999988876543 1111 1 113444553 27777666654
No 146
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=61.87 E-value=73 Score=35.81 Aligned_cols=167 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred cCceeeeeeeeeccCCCEEEEEeCCCEEEEE-----ECCCCccceEEEc----------------------------CCC
Q 003001 38 IGKVKHAVFHTQKTGRKRVVVSTEENVIASL-----DLRHGEIFWRHVL----------------------------GIN 84 (859)
Q Consensus 38 vG~~~~~~f~~~~~~~~~Vyvat~~g~l~AL-----d~~tG~ilWR~~l----------------------------~~~ 84 (859)
+|.+.++ .|...+..++|++.+|.|.|+ |.++|++.|...- ...
T Consensus 1 LGDIi~S---~P~~vg~~~~vGANDGmLHaF~~~~~d~~~g~E~~a~iP~~~~~~~~~~~~~~~~~~l~~l~~~~y~~h~ 77 (335)
T PF05567_consen 1 LGDIINS---SPVYVGAYLAVGANDGMLHAFNANDGDGRTGEEKFAFIPGELLRELLAAQPSAVLPNLKNLTDPDYSGHR 77 (335)
T ss_dssp -------------EE-SHHHEE-STT-EEEE---ESSS----EEEEE--------------HHHHCH-----------HH
T ss_pred CCCccCC---cceEECCeeEEEccCceEEEEEecCCCCccccceEEEcCCccccccchhhhhhhhhhhhhhccCCCcCcc
Q ss_pred cceeeeeee------ecCEEEEEEc---CCCeEEEEeCC-----CCcEeEEEeccCc----------cccCCcccccccc
Q 003001 85 DVVDGIDIA------LGKYVITLSS---DGSTLRAWNLP-----DGQMVWESFLRGS----------KHSKPLLLVPTNL 140 (859)
Q Consensus 85 ~~i~~l~~~------~~~~~V~Vs~---~g~~v~Ald~~-----tG~llW~~~~~~~----------~ls~~~~~~~~~~ 140 (859)
--+++.+.. .....+++++ .|..++|+|.. +....|.+....+ ...-+.|.+.
T Consensus 78 y~vDG~~~~~d~~~~~~wktilvggmg~GG~~~yALDVT~~d~~~p~~~~l~~~~~~~~~~~~~~~LG~t~s~P~I~--- 154 (335)
T PF05567_consen 78 YYVDGSPTVGDVDTGGSWKTILVGGMGRGGRGYYALDVTNPDSDDPTSPSLLDVKNDGSDGADDSDLGQTWSKPQIA--- 154 (335)
T ss_dssp HHHH---EEEEEEETTEEEEEEEEE-TTS-SEEEEEE-S-----SCCC-EEETT-TT-----------B--S--EEE---
T ss_pred eeecCCeEEEEeecCCCceEEEEeCCCCCcceEEEEecccccccCCCccccEecccCccccccccccCccccCCEEE---
Q ss_pred cccCCCeEEEEeCC-------------EEEEEEcCC-CcEEEEEeccCcceeeeeEEEee-----cCCeEEEEEecCCce
Q 003001 141 KVDKDSLILVSSKG-------------CLHAVSSID-GEILWTRDFAAESVEVQQVIQLD-----ESDQIYVVGYAGSSQ 201 (859)
Q Consensus 141 ~~~~~~~VvV~~~g-------------~l~ald~~t-G~~~W~~~~~~~~~~~~~~v~~~-----~~~~vyvv~~~g~~~ 201 (859)
......-++++.+| .|+.+|+++ |+.+|+...+.....+....... .-+.+|+.-..|
T Consensus 155 ~~~~g~w~~i~g~Gy~~~~~~~~~~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~G--- 231 (335)
T PF05567_consen 155 KVKNGKWVVIFGSGYNSDDVDSSSGGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLGG--- 231 (335)
T ss_dssp EETTSSEEEEEE--BS-TT-------EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETTS---
T ss_pred EccCCcEEEEEccCCCCCcccccCCCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCCC---
Q ss_pred eEEEEEEcCCCce
Q 003001 202 FHAYQINAMNGEL 214 (859)
Q Consensus 202 ~~v~ald~~tG~~ 214 (859)
.|.-+|+.+..+
T Consensus 232 -nlwR~dl~~~~~ 243 (335)
T PF05567_consen 232 -NLWRFDLSSANP 243 (335)
T ss_dssp -EEEEEE--TTST
T ss_pred -cEEEEECCCCCc
No 147
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=61.46 E-value=2.3e+02 Score=30.39 Aligned_cols=187 Identities=15% Similarity=0.180 Sum_probs=80.6
Q ss_pred CCCEEEEEeC-CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcC-CCeEEEEeCCC--CcEeE----EEe
Q 003001 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-GSTLRAWNLPD--GQMVW----ESF 123 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~-g~~v~Ald~~t--G~llW----~~~ 123 (859)
+.+.+|+.++ .+.|+.||. +|+++.|..+..-+...++. ..+++.++++.+ .+.++-++..+ ..+-= +..
T Consensus 32 d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~-y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~ 109 (248)
T PF06977_consen 32 DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGIT-YLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKIS 109 (248)
T ss_dssp TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEE-E-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE
T ss_pred CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEE-EECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEe
Confidence 4677887665 589999996 79999999997654444552 456666666553 46777776632 22211 111
Q ss_pred ccCccc-cCCcccccccccccC-CCeEEEEe---CCEEEEEEc--CCCcEEEEEecc--Ccce---eeeeEEEeecCCeE
Q 003001 124 LRGSKH-SKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSS--IDGEILWTRDFA--AESV---EVQQVIQLDESDQI 191 (859)
Q Consensus 124 ~~~~~l-s~~~~~~~~~~~~~~-~~~VvV~~---~g~l~ald~--~tG~~~W~~~~~--~~~~---~~~~~v~~~~~~~v 191 (859)
+....- -.+.+-+ ..+. .+.+++.. -..++.++. ............ .... .+..+..-...+.+
T Consensus 110 l~~~~~~N~G~EGl----a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~l 185 (248)
T PF06977_consen 110 LGFPNKGNKGFEGL----AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHL 185 (248)
T ss_dssp ---S---SS--EEE----EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEE
T ss_pred cccccCCCcceEEE----EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeE
Confidence 111100 0011111 1121 24555542 345777765 222332222211 1111 12222212356678
Q ss_pred EEEEecCCceeEEEEEEcCCCceeeeeeeecc-cCccCceEEecCcEEEEEECCCCeEEEEE
Q 003001 192 YVVGYAGSSQFHAYQINAMNGELLNHETAAFS-GGFVGDVALVSSDTLVTLDTTRSILVTVS 252 (859)
Q Consensus 192 yvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~-~~~s~~~~~v~~~~lv~~d~~~~~l~v~~ 252 (859)
|+++.... .+..+| .+|+++....+... .++... +-+..=+|+|. +|.|++..
T Consensus 186 liLS~es~---~l~~~d-~~G~~~~~~~L~~g~~gl~~~---~~QpEGIa~d~-~G~LYIvs 239 (248)
T PF06977_consen 186 LILSDESR---LLLELD-RQGRVVSSLSLDRGFHGLSKD---IPQPEGIAFDP-DGNLYIVS 239 (248)
T ss_dssp EEEETTTT---EEEEE--TT--EEEEEE-STTGGG-SS------SEEEEEE-T-T--EEEEE
T ss_pred EEEECCCC---eEEEEC-CCCCEEEEEEeCCcccCcccc---cCCccEEEECC-CCCEEEEc
Confidence 88776554 577788 68888776654332 111111 12333356664 36666543
No 148
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=60.58 E-value=3.4e+02 Score=31.98 Aligned_cols=218 Identities=13% Similarity=0.120 Sum_probs=107.3
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~ 132 (859)
++.|++++..|.+.--++.+-++ =++...-++.+..+ -...++.++-++.++++.+|| .+=+.+=+..++.+.- .
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L-~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G--~ 331 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSL-CMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFG--P 331 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceE-EeEeeecCCceEEE-EEecCccEeecCccceEEecc-ccccccccccCchhcC--C
Confidence 66689999999999999754444 34444333444444 234555554366789999999 4444444555543321 1
Q ss_pred cccccccccccCCCeEEEE-eC---------CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCcee
Q 003001 133 LLLVPTNLKVDKDSLILVS-SK---------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (859)
Q Consensus 133 ~~~~~~~~~~~~~~~VvV~-~~---------g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~ 202 (859)
... .....++++|. +. +...-.-..-|+.+|...... ....|+.+.+..
T Consensus 332 iRt-----v~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-------------s~~q~~T~gqdk--- 390 (626)
T KOG2106|consen 332 IRT-----VAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-------------SKNQLLTCGQDK--- 390 (626)
T ss_pred eeE-----EecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-------------ChhheeeccCcc---
Confidence 111 11223446653 22 222333334456677764321 122233333321
Q ss_pred EEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCeeeEEEEeecCcCCCCCCceEEeecC
Q 003001 203 HAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSS 282 (859)
Q Consensus 203 ~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~l~~l~~~~~~~~~~~~~~ 282 (859)
.+.-.+ .-++.|...+.-|..-.+ +-+.+ .++... ..|...+++.++.. +-++.-+ ..+.......
T Consensus 391 ~v~lW~--~~k~~wt~~~~d~~~~~~--fhpsg-~va~Gt-~~G~w~V~d~e~~~--lv~~~~d------~~~ls~v~ys 456 (626)
T KOG2106|consen 391 HVRLWN--DHKLEWTKIIEDPAECAD--FHPSG-VVAVGT-ATGRWFVLDTETQD--LVTIHTD------NEQLSVVRYS 456 (626)
T ss_pred eEEEcc--CCceeEEEEecCceeEee--ccCcc-eEEEee-ccceEEEEecccce--eEEEEec------CCceEEEEEc
Confidence 233344 678889998766532211 11122 444443 34777777777643 2222221 1222233333
Q ss_pred Cccce-EEEecC-cEEEEEEecCC-cEEEEE
Q 003001 283 LTGMF-TVKINN-YKLFIRLTSED-KLEVVH 310 (859)
Q Consensus 283 ~~~~~-~~~~~~-~~~l~~~~~~~-~~~v~~ 310 (859)
+.|-| .+.+.+ +..+++++.+| +...+.
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 34433 333333 55666666555 444433
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=60.35 E-value=84 Score=36.25 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=54.0
Q ss_pred eccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 49 QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 49 ~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.+++++.|.++...|.|.-|-++||+.+=..+++.. +..+....+...+++++..|.|+-||...-..+-++.-.+.+
T Consensus 311 VShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~--v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 311 VSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV--VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred ecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE--EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 355677888889999999999999998888777654 333322233344444444458999999887777666655443
No 150
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=59.91 E-value=2.8e+02 Score=30.76 Aligned_cols=169 Identities=17% Similarity=0.281 Sum_probs=76.4
Q ss_pred cccccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEE-EEEECCCCccceEEEcCC-CcceeeeeeeecCE
Q 003001 20 SLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVI-ASLDLRHGEIFWRHVLGI-NDVVDGIDIALGKY 97 (859)
Q Consensus 20 ~~Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l-~ALd~~tG~ilWR~~l~~-~~~i~~l~~~~~~~ 97 (859)
.-++|....|-..|+....+... ....-....++++++.+..|.+ ...| .|+-.|+..-.. ...+..+....++.
T Consensus 123 ~G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G~~~~s~~--~G~~~w~~~~r~~~~riq~~gf~~~~~ 199 (302)
T PF14870_consen 123 RGAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVSSRGNFYSSWD--PGQTTWQPHNRNSSRRIQSMGFSPDGN 199 (302)
T ss_dssp T--EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTSSEEEEE---TT-SS-EEEE--SSS-EEEEEE-TTS-
T ss_pred CCcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEECcccEEEEec--CCCccceEEccCccceehhceecCCCC
Confidence 35788877788899986543332 2222222346665555555554 4666 599999976432 22344331123344
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe-CCEEEEEEcCCCcEEEEEeccCcc
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAES 176 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-~g~l~ald~~tG~~~W~~~~~~~~ 176 (859)
+..++ .|+.++-=+..+...-|+........ ..--+.. .....++.+++.. +|.|+. + .+|-.-|+.......
T Consensus 200 lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~-~~~~~ld--~a~~~~~~~wa~gg~G~l~~-S-~DgGktW~~~~~~~~ 273 (302)
T PF14870_consen 200 LWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT-NGYGILD--LAYRPPNEIWAVGGSGTLLV-S-TDGGKTWQKDRVGEN 273 (302)
T ss_dssp EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS---S-EEE--EEESSSS-EEEEESTT-EEE-E-SSTTSS-EE-GGGTT
T ss_pred EEEEe-CCcEEEEccCCCCccccccccCCccc-CceeeEE--EEecCCCCEEEEeCCccEEE-e-CCCCccceECccccC
Confidence 44444 67788888867788889886544321 1111111 0122246677764 554433 3 456678998765322
Q ss_pred --eeeeeEEEeecCCeEEEEEecC
Q 003001 177 --VEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 177 --~~~~~~v~~~~~~~vyvv~~~g 198 (859)
..+++++. ..++.-|++|-.|
T Consensus 274 ~~~n~~~i~f-~~~~~gf~lG~~G 296 (302)
T PF14870_consen 274 VPSNLYRIVF-VNPDKGFVLGQDG 296 (302)
T ss_dssp SSS---EEEE-EETTEEEEE-STT
T ss_pred CCCceEEEEE-cCCCceEEECCCc
Confidence 23555543 3567778877666
No 151
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=58.94 E-value=26 Score=40.23 Aligned_cols=180 Identities=11% Similarity=0.106 Sum_probs=97.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+..+..+..+|.|+|||-.|+++.-...+.+.. .+.-+ ..+..+.|.- ...++-+| ..|.++--..-..++.
T Consensus 141 GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~L---Hneq~~AVAQ-K~y~yvYD-~~GtElHClk~~~~v~-- 213 (545)
T KOG1272|consen 141 GRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFL---HNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRHIRVA-- 213 (545)
T ss_pred ccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhh---cchHHHHhhh-hceEEEec-CCCcEEeehhhcCchh--
Confidence 444888999999999999999999988876551 11111 1222222222 23566665 3566665555444432
Q ss_pred CcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
.+.+.| -..+++. ..|-|.-.|..+|+++=+.....+.+. ++..---+.|.-+|..+ +.|.-+.+
T Consensus 214 rLeFLP-------yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~---vm~qNP~NaVih~Ghsn---GtVSlWSP 280 (545)
T KOG1272|consen 214 RLEFLP-------YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD---VMKQNPYNAVIHLGHSN---GTVSLWSP 280 (545)
T ss_pred hhcccc-------hhheeeecccCCceEEEeechhhhhHHHHccCCccc---hhhcCCccceEEEcCCC---ceEEecCC
Confidence 344554 3455553 378899999999999887766655431 11001122333334333 35665666
Q ss_pred CCCceeeeeeeecc-cCccCceEEecCcEEEEEECCCCeEEEEEeec
Q 003001 210 MNGELLNHETAAFS-GGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 210 ~tG~~~w~~~v~~~-~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~s 255 (859)
..-+++-+.. +. +.++ ++.+-.++.|-+...-...+.+-||..
T Consensus 281 ~skePLvKiL--cH~g~V~-siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 281 NSKEPLVKIL--CHRGPVS-SIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred CCcchHHHHH--hcCCCcc-eEEECCCCcEEeecccccceeEeeecc
Confidence 6655553331 11 1222 222222333333333335688888876
No 152
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=57.99 E-value=3.2e+02 Score=32.24 Aligned_cols=133 Identities=20% Similarity=0.372 Sum_probs=73.3
Q ss_pred EEEEEeCCCEEEEEECCCC---------ccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 55 RVVVSTEENVIASLDLRHG---------EIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG---------~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
-+|++|..|.|.-=+..+| +.+| +++....+..++-++.++.|+.|| +-++.|.....
T Consensus 341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-----------gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~ 407 (626)
T KOG2106|consen 341 DILVGTTRNFILQGTLENGFTLTVQGHGDELW-----------GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE 407 (626)
T ss_pred cEEEeeccceEEEeeecCCceEEEEeccccee-----------eEEcCCChhheeeccCcceEEEcc--CCceeEEEEec
Confidence 3999988776644333333 3333 332222333443366678999999 88999999987
Q ss_pred CccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 126 GSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
.+..+ +.+ +..+.+.+. ..|+...+|.++ +.+=+...... +..++.-.-++..++++...+ ++.+
T Consensus 408 d~~~~--~~f-------hpsg~va~Gt~~G~w~V~d~e~-~~lv~~~~d~~---~ls~v~ysp~G~~lAvgs~d~-~iyi 473 (626)
T KOG2106|consen 408 DPAEC--ADF-------HPSGVVAVGTATGRWFVLDTET-QDLVTIHTDNE---QLSVVRYSPDGAFLAVGSHDN-HIYI 473 (626)
T ss_pred CceeE--eec-------cCcceEEEeeccceEEEEeccc-ceeEEEEecCC---ceEEEEEcCCCCEEEEecCCC-eEEE
Confidence 76431 112 223544443 589999999998 44444333322 223332123444444454432 3555
Q ss_pred EEEEcCCCcee
Q 003001 205 YQINAMNGELL 215 (859)
Q Consensus 205 ~ald~~tG~~~ 215 (859)
+-+|. +|...
T Consensus 474 y~Vs~-~g~~y 483 (626)
T KOG2106|consen 474 YRVSA-NGRKY 483 (626)
T ss_pred EEECC-CCcEE
Confidence 55553 45444
No 153
>PRK13684 Ycf48-like protein; Provisional
Probab=56.33 E-value=3.3e+02 Score=30.45 Aligned_cols=186 Identities=15% Similarity=0.156 Sum_probs=84.0
Q ss_pred HHHHHHhhccCccccccccccccEeEEEeccCcee---eeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC
Q 003001 8 LTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVK---HAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN 84 (859)
Q Consensus 8 ~~l~~l~~~~~~~~Al~edq~G~~dW~~~~vG~~~---~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~ 84 (859)
+.+++|++|........ ...-|++...+... .-.|. +++..|+....|.|..= .||-.-|++.....
T Consensus 16 ~~~~~~~~~~~~~~~~~----~~~~W~~~~~~~~~~l~~v~F~----d~~~g~avG~~G~il~T--~DgG~tW~~~~~~~ 85 (334)
T PRK13684 16 ALLLVLSGCSTTRVPML----SSSPWQVIDLPTEANLLDIAFT----DPNHGWLVGSNRTLLET--NDGGETWEERSLDL 85 (334)
T ss_pred HHHhhccccCCCCcccc----cCCCcEEEecCCCCceEEEEEe----CCCcEEEEECCCEEEEE--cCCCCCceECccCC
Confidence 34445666654332222 23349887654321 11233 34455666666765443 46888899864321
Q ss_pred --c--ceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEE
Q 003001 85 --D--VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAV 159 (859)
Q Consensus 85 --~--~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~al 159 (859)
. .+..+. ..++..++++. .+.+ |-..||-.-|+..............+ ....++.+++. ..|.+++-
T Consensus 86 ~~~~~~l~~v~-~~~~~~~~~G~-~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i----~~~~~~~~~~~g~~G~i~~S 157 (334)
T PRK13684 86 PEENFRLISIS-FKGDEGWIVGQ-PSLL--LHTTDGGKNWTRIPLSEKLPGSPYLI----TALGPGTAEMATNVGAIYRT 157 (334)
T ss_pred cccccceeeeE-EcCCcEEEeCC-CceE--EEECCCCCCCeEccCCcCCCCCceEE----EEECCCcceeeeccceEEEE
Confidence 1 111221 12333333343 3333 34578989998754221110000000 11112333333 34544333
Q ss_pred EcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 160 SSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 160 d~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
.+|-.-|+.-..........+. ...++.+++++..|. ++. ...+|...|+..
T Consensus 158 --~DgG~tW~~~~~~~~g~~~~i~-~~~~g~~v~~g~~G~----i~~-s~~~gg~tW~~~ 209 (334)
T PRK13684 158 --TDGGKNWEALVEDAAGVVRNLR-RSPDGKYVAVSSRGN----FYS-TWEPGQTAWTPH 209 (334)
T ss_pred --CCCCCCceeCcCCCcceEEEEE-ECCCCeEEEEeCCce----EEE-EcCCCCCeEEEe
Confidence 4566778864432211122222 124455555555552 332 234666778764
No 154
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.16 E-value=5.2e+02 Score=32.73 Aligned_cols=125 Identities=12% Similarity=0.122 Sum_probs=64.6
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCC--cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCc
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGIN--DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPL 133 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~--~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~ 133 (859)
++|...+....-|=.-+-...|..+.=.+ .+++++-....++++.-.+.++.+|.||...-+-+=.++-..
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren------- 292 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN------- 292 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC-------
Confidence 56655544433332333445677655333 123333112234455535567899999997544433332221
Q ss_pred ccccccccccCCCeEEEE---eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 134 LLVPTNLKVDKDSLILVS---SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 134 ~~~~~~~~~~~~~~VvV~---~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
+...++ ....|+|---++|-.+...+...|.. ...++.+|++- +. .+..+|..
T Consensus 293 ------------dRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~-------~v~~n~LfYvk--d~---~i~~~d~~ 348 (1202)
T KOG0292|consen 293 ------------DRFWILAAHPELNLFAAGHDSGMIVFKLERERPAY-------AVNGNGLFYVK--DR---FIRSYDLR 348 (1202)
T ss_pred ------------CeEEEEEecCCcceeeeecCCceEEEEEcccCceE-------EEcCCEEEEEc--cc---eEEeeecc
Confidence 222222 24566666667788887776554332 24667776654 21 36666666
Q ss_pred C
Q 003001 211 N 211 (859)
Q Consensus 211 t 211 (859)
|
T Consensus 349 t 349 (1202)
T KOG0292|consen 349 T 349 (1202)
T ss_pred c
Confidence 5
No 155
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=55.15 E-value=3.3e+02 Score=30.19 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=32.8
Q ss_pred EEEEEcCCCeEEEEeCCCC-cEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcE
Q 003001 98 VITLSSDGSTLRAWNLPDG-QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI 166 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG-~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~ 166 (859)
++.+-..+++++.||+.+| ...|...-.-... . ..+.++.+++ .+..++.++.++|..
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~----~------~~d~~g~Lv~-~~~g~~~~~~~~~~~ 97 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSG----A------LIDAGGRLIA-CEHGVRLLDPDTGGK 97 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccc----e------eecCCCeEEE-EccccEEEeccCCce
Confidence 5555556789999999988 6666655332211 1 2343344444 444455555565554
No 156
>PRK03629 tolB translocation protein TolB; Provisional
Probab=53.36 E-value=4.1e+02 Score=30.71 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=70.1
Q ss_pred ecCEEEEEEc--CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCC-eEEEE-e-CC--EEEEEEcCCCcE
Q 003001 94 LGKYVITLSS--DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVS-S-KG--CLHAVSSIDGEI 166 (859)
Q Consensus 94 ~~~~~V~Vs~--~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~-~-~g--~l~ald~~tG~~ 166 (859)
.|+.+++++. .+..++.||..+|+..--....... ..... ..++ .+++. . +| .|+.+|.++|+.
T Consensus 209 DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~--~~~~~-------SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 209 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN--GAPAF-------SPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc--CCeEE-------CCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 4566777653 2357999999888754332222211 11111 1134 33332 2 33 688889888865
Q ss_pred EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccC-ccCceEEecCcEEEEEECCC
Q 003001 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG-FVGDVALVSSDTLVTLDTTR 245 (859)
Q Consensus 167 ~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~-~s~~~~~v~~~~lv~~d~~~ 245 (859)
.=-...... ......+..+..+++.+..++ ...++.+|+.+|+... +..... ....++...+..+++.....
T Consensus 280 ~~lt~~~~~---~~~~~wSPDG~~I~f~s~~~g-~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 280 RQVTDGRSN---NTEPTWFPDSQNLAYTSDQAG-RPQVYKVNINGGAPQR---ITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred EEccCCCCC---cCceEECCCCCEEEEEeCCCC-CceEEEEECCCCCeEE---eecCCCCccCEEECCCCCEEEEEEccC
Confidence 311111111 111222334555655554332 2468888998886531 111111 11111112334454444332
Q ss_pred --CeEEEEEeecCe
Q 003001 246 --SILVTVSFKNRK 257 (859)
Q Consensus 246 --~~l~v~~L~sg~ 257 (859)
..+++.++.++.
T Consensus 353 g~~~I~~~dl~~g~ 366 (429)
T PRK03629 353 GQQHIAKQDLATGG 366 (429)
T ss_pred CCceEEEEECCCCC
Confidence 346777777765
No 157
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=53.35 E-value=59 Score=36.66 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=66.2
Q ss_pred ccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeee-----eeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGI-----DIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 50 ~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l-----~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
+++++.|-.++-+|.|---||++|+.+=|.--.-..-|.++ +....-+.+.-++.+|.++-||..-|+.+-....
T Consensus 166 sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 166 SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence 34667777888899999999999988765433322223322 1122333343355567999999999988877665
Q ss_pred cCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEE
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEIL 167 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~ 167 (859)
....+ ..+ ...+++.++-. .|+++...++.+|...
T Consensus 246 HT~~V----TCv----rwGG~gliySgS~DrtIkvw~a~dG~~~ 281 (480)
T KOG0271|consen 246 HTASV----TCV----RWGGEGLIYSGSQDRTIKVWRALDGKLC 281 (480)
T ss_pred Cccce----EEE----EEcCCceEEecCCCceEEEEEccchhHH
Confidence 54432 111 12223444443 3777777777776543
No 158
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.72 E-value=3e+02 Score=31.63 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=46.8
Q ss_pred eccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeee-eeeecCEEEEEEcCCCeEEEEeCC
Q 003001 36 QYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGI-DIALGKYVITLSSDGSTLRAWNLP 114 (859)
Q Consensus 36 ~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l-~~~~~~~~V~Vs~~g~~v~Ald~~ 114 (859)
.++|..+...|..=++++..+.+-+-+-.+.--|+.||+.+=...-+.+.+.... -.+.|...|+ |+.++.+.+||.
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-Gs~dr~i~~wdl- 341 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-GSPDRTIIMWDL- 341 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-cCCCCcEEEecC-
Confidence 3444443333333345555566656666677778888887544432211111111 1234555555 555789999996
Q ss_pred CCcEeEEE
Q 003001 115 DGQMVWES 122 (859)
Q Consensus 115 tG~llW~~ 122 (859)
||.++=.+
T Consensus 342 Dgn~~~~W 349 (519)
T KOG0293|consen 342 DGNILGNW 349 (519)
T ss_pred Ccchhhcc
Confidence 78775333
No 159
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.96 E-value=99 Score=32.90 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=51.6
Q ss_pred CEEEEEEcCCCeEEEEe--CCCCcEeEEEec-----cCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcE
Q 003001 96 KYVITLSSDGSTLRAWN--LPDGQMVWESFL-----RGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEI 166 (859)
Q Consensus 96 ~~~V~Vs~~g~~v~Ald--~~tG~llW~~~~-----~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~ 166 (859)
+..+++-+.+-.|-||| ..+|.+.=+..+ ..+. .+..|.+..++..|.++|. .+|+++.+|+.||+.
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~----e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF----ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc----CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence 34555555566898888 788876533222 1111 1223333456667888884 689999999999999
Q ss_pred EEEEeccCcce
Q 003001 167 LWTRDFAAESV 177 (859)
Q Consensus 167 ~W~~~~~~~~~ 177 (859)
+=+...+.+..
T Consensus 246 L~eiklPt~qi 256 (310)
T KOG4499|consen 246 LLEIKLPTPQI 256 (310)
T ss_pred EEEEEcCCCce
Confidence 99999985543
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=51.87 E-value=3.6e+02 Score=31.69 Aligned_cols=142 Identities=9% Similarity=0.112 Sum_probs=72.4
Q ss_pred EEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCE-EEEEEcCCCeEEEEeCCCCcEeEEEe--ccCccccC
Q 003001 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKY-VITLSSDGSTLRAWNLPDGQMVWESF--LRGSKHSK 131 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~-~V~Vs~~g~~v~Ald~~tG~llW~~~--~~~~~ls~ 131 (859)
.|-..+..|.|.-.+.+||.--=....+....+..+....... ++...+++|.|..||...-.+...+. ...|. .
T Consensus 135 yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~--~ 212 (673)
T KOG4378|consen 135 YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC--R 212 (673)
T ss_pred eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc--C
Confidence 3444566788888888888654444433332222332222222 33445567799999986555554432 22221 2
Q ss_pred CcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
+..+.| . ...++|. -|.+++-+|..+-+..=+..... |...+.-...|...++|. ++++++++|+
T Consensus 213 gicfsp-----s-ne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~----Plstvaf~~~G~~L~aG~---s~G~~i~YD~ 279 (673)
T KOG4378|consen 213 GICFSP-----S-NEALLVSVGYDKKINIYDIRSQASTDRLTYSH----PLSTVAFSECGTYLCAGN---SKGELIAYDM 279 (673)
T ss_pred cceecC-----C-ccceEEEecccceEEEeecccccccceeeecC----CcceeeecCCceEEEeec---CCceEEEEec
Confidence 334433 1 3455663 49999999976433221111111 111111123444444443 3457999998
Q ss_pred CC
Q 003001 210 MN 211 (859)
Q Consensus 210 ~t 211 (859)
..
T Consensus 280 R~ 281 (673)
T KOG4378|consen 280 RS 281 (673)
T ss_pred cc
Confidence 53
No 161
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=51.04 E-value=60 Score=40.31 Aligned_cols=109 Identities=16% Similarity=0.252 Sum_probs=66.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
.++.+|.++.++.-+-+|++||+..|......+ +..+ |+.+-..-+|.-.|..+=...|......-..
T Consensus 106 sdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~--~~~~--------v~~grt~ytv~m~d~~~~~~~wn~t~~dy~a-- 173 (903)
T KOG1027|consen 106 SDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEP--IKQL--------VYLGRTNYTVTMYDKNVRGKTWNTTFGDYSA-- 173 (903)
T ss_pred CCCeEEecccccceEEecCCccceeEEEecCCc--chhh--------eecccceeEEecccCcccCceeeccccchhc--
Confidence 478899999999999999999999999887664 3221 2222112233333445555566655543221
Q ss_pred CcccccccccccCCCeEEE--EeCCEEEEEEcCCCcEEEEEeccCcce
Q 003001 132 PLLLVPTNLKVDKDSLILV--SSKGCLHAVSSIDGEILWTRDFAAESV 177 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV--~~~g~l~ald~~tG~~~W~~~~~~~~~ 177 (859)
...+ ...+.....+ .++|-+.-+|.++|+.+|..+...+..
T Consensus 174 --~~~~---~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spvv 216 (903)
T KOG1027|consen 174 --QYPS---GVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPVV 216 (903)
T ss_pred --cCCC---ccCCceeEEEeecCCccEEeccCcccceeeccccCCceE
Confidence 1111 1111112222 358888889999999999998776543
No 162
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.84 E-value=3.6e+02 Score=30.51 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=77.4
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCc------
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGE------ 165 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~------ 165 (859)
.|+.++. .+.+..+.+|+-.+|.-+-.++...+=+ -++ .+..||.+++.. +.+|+.--.++++
T Consensus 204 ~gd~ilS-~srD~tik~We~~tg~cv~t~~~h~ewv----r~v----~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 204 LGDHILS-CSRDNTIKAWECDTGYCVKTFPGHSEWV----RMV----RVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred cCCeeee-cccccceeEEecccceeEEeccCchHhE----EEE----EecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 3433333 3446789999999998888777665522 011 223355555542 4455544444441
Q ss_pred --------EEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcE
Q 003001 166 --------ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDT 237 (859)
Q Consensus 166 --------~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~ 237 (859)
+.|.-....+.+.-+ .++.+++.+.+.+-.. ..+-.+|..+|.-+-+.. +-..++.+..+-.++.+
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~a--t~~~~~~~~l~s~SrD---ktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gky 348 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEA--TGSTNGGQVLGSGSRD---KTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKY 348 (406)
T ss_pred ccccceEEEEecccccCcchhhc--cCCCCCccEEEeeccc---ceEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeE
Confidence 123332222221100 0012233455444333 257888999998876653 22334444222223443
Q ss_pred -EEEEECCCCeEEEEEeecCe
Q 003001 238 -LVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 238 -lv~~d~~~~~l~v~~L~sg~ 257 (859)
+-|+| +++|++-++++++
T Consensus 349 i~ScaD--Dktlrvwdl~~~~ 367 (406)
T KOG0295|consen 349 ILSCAD--DKTLRVWDLKNLQ 367 (406)
T ss_pred EEEEec--CCcEEEEEeccce
Confidence 44565 6899999999887
No 163
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=49.65 E-value=3.1e+02 Score=31.67 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred eeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEE
Q 003001 43 HAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWES 122 (859)
Q Consensus 43 ~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~ 122 (859)
++.|| +++-..-+++.+|+|--.|.+++..+=+..- ..+.+..+....++..++++.+++.|+.||..-=+..=.+
T Consensus 352 s~~fH---pDgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 352 SAAFH---PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred EeeEc---CCceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Q ss_pred eccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCccee-eeeEEEeecCCeEEEEEecCCce
Q 003001 123 FLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVE-VQQVIQLDESDQIYVVGYAGSSQ 201 (859)
Q Consensus 123 ~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~-~~~~v~~~~~~~vyvv~~~g~~~ 201 (859)
.+....-..+..+-. .|..++..+..|+.+--+.-..-|+.-....... +...++ ......|.++-.-+..
T Consensus 428 ~l~~~~~v~s~~fD~-------SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~-Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQ-------SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVR-FGEHAQYLASTSMDAI 499 (506)
T ss_pred eccccccceeEEEcC-------CCCeEEeecceeEEEEEecccccceeeehhhhcccccceee-ecccceEEeeccchhh
Q ss_pred eEEEEE
Q 003001 202 FHAYQI 207 (859)
Q Consensus 202 ~~v~al 207 (859)
++++++
T Consensus 500 l~~~a~ 505 (506)
T KOG0289|consen 500 LRLYAL 505 (506)
T ss_pred eEEeec
No 164
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=48.99 E-value=2.3e+02 Score=33.26 Aligned_cols=116 Identities=12% Similarity=0.174 Sum_probs=73.0
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeE-EE-EeCCEEEEEEcCCCcEEEEEe
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLI-LV-SSKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~V-vV-~~~g~l~ald~~tG~~~W~~~ 171 (859)
.++..++|+|...+|.-||.+.=.+.=...+..... ..... ++.-|..| |. .+||.+...|+.+-.++=++.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssap----aCyAL--a~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq 548 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP----ACYAL--AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ 548 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcch----hhhhh--hcCCccceeeeeccCCcEEEEEcccceeeeccc
Confidence 466677779888899999999888777666654321 01110 11113333 33 368888888888766665554
Q ss_pred ccCcceeeeeEEEe-ecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeec
Q 003001 172 FAAESVEVQQVIQL-DESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222 (859)
Q Consensus 172 ~~~~~~~~~~~v~~-~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~ 222 (859)
.-... ..+++. ..+..++-.|.+. .|-+.|+.+|+.+-|..+.+
T Consensus 549 GhtDG---ascIdis~dGtklWTGGlDn----tvRcWDlregrqlqqhdF~S 593 (705)
T KOG0639|consen 549 GHTDG---ASCIDISKDGTKLWTGGLDN----TVRCWDLREGRQLQQHDFSS 593 (705)
T ss_pred CCCCC---ceeEEecCCCceeecCCCcc----ceeehhhhhhhhhhhhhhhh
Confidence 32211 124432 3466778766665 49999999999998886544
No 165
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=48.78 E-value=1.1e+02 Score=28.67 Aligned_cols=60 Identities=25% Similarity=0.562 Sum_probs=38.2
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEE
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~ 170 (859)
+...+.+..+| .|..+|.. |+.+|......... . . ...+....+|.|..+| .+|+++|+-
T Consensus 19 ~~~~L~l~~dG-nLvl~~~~-~~~iWss~~t~~~~-----~-~-------~~~~~L~~~GNlvl~d-~~~~~lW~S 78 (114)
T PF01453_consen 19 GNYTLILQSDG-NLVLYDSN-GSVIWSSNNTSGRG-----N-S-------GCYLVLQDDGNLVLYD-SSGNVLWQS 78 (114)
T ss_dssp TTEEEEEETTS-EEEEEETT-TEEEEE--S-TTSS-------S-------SEEEEEETTSEEEEEE-TTSEEEEES
T ss_pred ccccceECCCC-eEEEEcCC-CCEEEEecccCCcc-----c-c-------CeEEEEeCCCCEEEEe-ecceEEEee
Confidence 55677777754 78888865 88899983222110 0 0 1122334689999998 699999997
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=48.66 E-value=1.8e+02 Score=35.10 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=40.7
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcC
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSI 162 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~ 162 (859)
..+++++.+. ++.++.||..+++.+-+.......+ +++. ...||.++.. .|..+..+|..
T Consensus 139 TaDgil~s~a-~g~v~i~D~stqk~~~el~~h~d~v-QSa~-------WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 139 TADGILASGA-HGSVYITDISTQKTAVELSGHTDKV-QSAD-------WSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred CcCceEEecc-CceEEEEEcccCceeecccCCchhh-hccc-------cccCCceEeeecCCcceEEeCCc
Confidence 4667777544 5699999999999999988777655 2222 2235666664 26667777754
No 167
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=48.26 E-value=1.3e+02 Score=36.78 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=40.9
Q ss_pred EcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEecc
Q 003001 102 SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 102 s~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~ 173 (859)
++.+.+||.||..+|..+--+......+ ..+. ....|.-++. .+|.|.--|..+|+++=+....
T Consensus 553 GSsD~tVRlWDv~~G~~VRiF~GH~~~V----~al~----~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 553 GSSDRTVRLWDVSTGNSVRIFTGHKGPV----TALA----FSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred CCCCceEEEEEcCCCcEEEEecCCCCce----EEEE----EcCCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence 5557899999999999987776654433 1221 1114555553 3777777777777766555433
No 168
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=48.23 E-value=1.8e+02 Score=26.82 Aligned_cols=52 Identities=19% Similarity=0.409 Sum_probs=29.3
Q ss_pred eEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEecc
Q 003001 107 TLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 107 ~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~ 173 (859)
.+.-++...+.++|......+.- . ...+.+..+|.|..++. +|.++|.....
T Consensus 31 nlV~~~~~~~~~vW~snt~~~~~-------------~-~~~l~l~~dGnLvl~~~-~g~~vW~S~t~ 82 (114)
T smart00108 31 NLILYKSSSRTVVWVANRDNPVS-------------D-SCTLTLQSDGNLVLYDG-DGRVVWSSNTT 82 (114)
T ss_pred EEEEEECCCCcEEEECCCCCCCC-------------C-CEEEEEeCCCCEEEEeC-CCCEEEEeccc
Confidence 44444443367888765433210 0 11222335888888874 58999986544
No 169
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=47.95 E-value=1.7e+02 Score=33.78 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=21.7
Q ss_pred ecCEEEEE-EcCCCeEEEEeCCCCcEeEEEec
Q 003001 94 LGKYVITL-SSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 94 ~~~~~V~V-s~~g~~v~Ald~~tG~llW~~~~ 124 (859)
...+.+++ |+..+.+|.|..++|.++=-...
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a 121 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSA 121 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHh
Confidence 34455554 44677999999999999855433
No 170
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=46.47 E-value=52 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCCEEEEEeC-CCEEEEEECCCCccceEEEcC
Q 003001 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLG 82 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~ 82 (859)
+++++|++.. .+.|..+|+++|+++=+...+
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 4678999885 689999999999877766654
No 171
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.04 E-value=35 Score=38.46 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=50.2
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
++.+.||+++..|.|+++|.+.|+..=+.-=+-.+++.+++...+..++.-+|-++.||-+|..+-+++-...+
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence 35777999999999999999999876553222223454553333334555466688999999998666544443
No 172
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=45.92 E-value=6.8e+02 Score=31.08 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=63.4
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCCc-------ceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGIND-------VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-------~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
|+.+.....+++|+. +|+..=+-..-... .+.++. ...+..++.|+.|+.+.-||..+++-+-...-. -.
T Consensus 339 v~l~nNtv~~ysl~~-s~~~~p~~~~~~~i~~~GHR~dVRsl~-vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~ 415 (888)
T KOG0306|consen 339 VLLANNTVEWYSLEN-SGKTSPEADRTSNIEIGGHRSDVRSLC-VSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YI 415 (888)
T ss_pred EEeecCceEEEEecc-CCCCCccccccceeeeccchhheeEEE-eecCceeeeecCCCcEEEEEccCcceeEEeccc-cE
Confidence 555566678999998 77664111110001 122331 234556666777789999999999988776644 22
Q ss_pred ccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEe
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~ 171 (859)
+ ...++| ++..|++. .+|.|..+|.+++..+=+.+
T Consensus 416 l--~~~Fvp------gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 416 L--ASKFVP------GDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred E--EEEecC------CCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 2 223443 24445553 59999999999887654433
No 173
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=45.91 E-value=1.3e+02 Score=35.63 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=60.9
Q ss_pred CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccC-ceE
Q 003001 153 KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-DVA 231 (859)
Q Consensus 153 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~ 231 (859)
-|.|..+|..+|+++-+-....-. .+.+....++.|.+.+..|...++++-||+.|=++..+.... ++. +.+
T Consensus 374 ls~LvllD~~tg~~l~~S~~~~Ir---~r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~kes~~~----i~~~S~l 446 (489)
T PF05262_consen 374 LSELVLLDSDTGDTLKRSPVNGIR---GRTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEVKKESEDE----ISWQSSL 446 (489)
T ss_pred ceeEEEEeCCCCceecccccceec---cceeEEcCCCEEEEeccCCchheEEEecCcccceeeeecccc----ccccCce
Confidence 478999999999988775443211 112222344444444455666788998999998888776432 332 455
Q ss_pred Ee-cCcEEEEEECCCCeEEEEEeecC
Q 003001 232 LV-SSDTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 232 ~v-~~~~lv~~d~~~~~l~v~~L~sg 256 (859)
++ ++.+|+++...+|..+..-..++
T Consensus 447 ~~~~~~iyaVv~~~~g~~~L~rF~~~ 472 (489)
T PF05262_consen 447 IVDGQMIYAVVKKDNGKWYLGRFDSN 472 (489)
T ss_pred EEcCCeEEEEEEcCCCeEEEeecCcc
Confidence 55 55566666346677777666554
No 174
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.84 E-value=2.6e+02 Score=31.59 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=44.1
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEe
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~ 171 (859)
....++.++.++.||..+|..+-+......-+ .+..+-| .|..++. .|++|...|.++++..=..+
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV-r~~af~p-------~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV-RGVAFSP-------GGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEeccccee-eeeEEcC-------CCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 44445567899999999999999887665433 2222222 4555543 58889998888887654443
No 175
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=44.60 E-value=2e+02 Score=30.86 Aligned_cols=72 Identities=11% Similarity=0.254 Sum_probs=46.4
Q ss_pred eeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeec
Q 003001 179 VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 179 ~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~s 255 (859)
+..+......+.+|++.-..+ .++.|+. +|+++.+..+....+..+ +.+++++.++..+...+.|+.+.+..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~---~i~els~-~G~vlr~i~l~g~~D~Eg-I~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPG---EIYELSL-DGKVLRRIPLDGFGDYEG-ITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTT---EEEEEET-T--EEEEEE-SS-SSEEE-EEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ccccEEcCCCCeEEEEECCCC---EEEEEcC-CCCEEEEEeCCCCCCcee-EEEECCCEEEEEEcCCCcEEEEEEec
Confidence 334444346788898776654 5899996 699998876644444433 55668888888887778898888843
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=44.52 E-value=2.6e+02 Score=31.36 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=43.8
Q ss_pred eEEE-EeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCc
Q 003001 147 LILV-SSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGE 213 (859)
Q Consensus 147 ~VvV-~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~ 213 (859)
.|.| +++|.+..+|..+|+.+=+++...+.....+++....+..|+..+.+| .|-.+|+.+-+
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG----~Vr~wD~Rs~~ 105 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDG----TVRLWDIRSQA 105 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCC----eEEEEEeecch
Confidence 3455 589999999999999998887776555433443223667788777666 37777776543
No 177
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.41 E-value=1.6e+02 Score=32.54 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=60.7
Q ss_pred CCCEEEEEeCCCE----EEEEECCCCccceEEEcCCCcceeeeeeeecCEEEE-E---EcCCCeEEEEeCCCCcEeEEEe
Q 003001 52 GRKRVVVSTEENV----IASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVIT-L---SSDGSTLRAWNLPDGQMVWESF 123 (859)
Q Consensus 52 ~~~~Vyvat~~g~----l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~-V---s~~g~~v~Ald~~tG~llW~~~ 123 (859)
.+++++.+-++|. |++||.++|+..|-..-+. ..+. ...+...+ + ...-..++++|..+|+.+-+.-
T Consensus 116 ~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps---~KG~--~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f 190 (339)
T PF09910_consen 116 YEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPS---LKGT--LVHDYACFGINNFHKGVSGIHCLDLISGKWVIESF 190 (339)
T ss_pred CcCEEEEEecCCcceeeeEEEcccCCceeeccCCCC---cCce--EeeeeEEEeccccccCCceEEEEEccCCeEEEEec
Confidence 4788999998874 8999999999988644322 2222 11222222 2 1122579999999998744321
Q ss_pred ccCccccCCccccc-ccccccCCCeEEEEeCCEEEEEEcCCCcE
Q 003001 124 LRGSKHSKPLLLVP-TNLKVDKDSLILVSSKGCLHAVSSIDGEI 166 (859)
Q Consensus 124 ~~~~~ls~~~~~~~-~~~~~~~~~~VvV~~~g~l~ald~~tG~~ 166 (859)
-.+..........+ .+..+...+.++++..|.+...|+-+|+.
T Consensus 191 ~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGGi~vgnP~~~e~ 234 (339)
T PF09910_consen 191 DVSLSVDGGPVIRPELGAMASAYNRLFAFVRGGIFVGNPYNGEE 234 (339)
T ss_pred ccccCCCCCceEeeccccEEEEeeeEEEEEeccEEEeCCCCCCc
Confidence 11111100001111 00111223566677777788888877754
No 178
>PRK01742 tolB translocation protein TolB; Provisional
Probab=44.37 E-value=5.5e+02 Score=29.58 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=34.5
Q ss_pred cCCCEEEEEe-C--CCEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcCCC--eEEEEeCCCCcE
Q 003001 51 TGRKRVVVST-E--ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGS--TLRAWNLPDGQM 118 (859)
Q Consensus 51 ~~~~~Vyvat-~--~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g~--~v~Ald~~tG~l 118 (859)
+++++++.++ + ...|+.+|.++|+..--..++.. ...... +.++.+++.+..++ .++.||..+|.+
T Consensus 213 PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~--~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 213 PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH--NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc--cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence 3455555443 2 34799999999875322222221 111111 23445555443333 477788877764
No 179
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=43.70 E-value=1.9e+02 Score=26.80 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=16.2
Q ss_pred EeCCEEEEEEcCCCcEEEEEecc
Q 003001 151 SSKGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 151 ~~~g~l~ald~~tG~~~W~~~~~ 173 (859)
..+|.|+..|. +|.++|.....
T Consensus 62 ~~dGnLvl~~~-~g~~vW~S~~~ 83 (116)
T cd00028 62 QSDGNLVIYDG-SGTVVWSSNTT 83 (116)
T ss_pred ecCCCeEEEcC-CCcEEEEeccc
Confidence 35888887774 67899986544
No 180
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=43.44 E-value=5.5e+02 Score=29.32 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=35.3
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeee-eeecCEEEEEEcCCCeEEEEeCCCCcEe
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSDGSTLRAWNLPDGQMV 119 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~-~~~~~~~V~Vs~~g~~v~Ald~~tG~ll 119 (859)
++.++..++.+..+.--|+.|-.+.-.-+--..- +..+. .+.|+.+.. +..+|.++.||+.+|+++
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~W-VlcvawsPDgk~iAS-G~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNW-VLCVAWSPDGKKIAS-GSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCcceeecCCccE-EEEEEECCCcchhhc-cccCCeEEEecCCCCCcc
Confidence 4566777777777776666654333221110000 00110 123333333 445679999999998765
No 181
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.16 E-value=5e+02 Score=28.77 Aligned_cols=99 Identities=12% Similarity=0.243 Sum_probs=65.1
Q ss_pred eCCEEEEEEcCCCcE--EEEEeccCcce---eeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCc
Q 003001 152 SKGCLHAVSSIDGEI--LWTRDFAAESV---EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGF 226 (859)
Q Consensus 152 ~~g~l~ald~~tG~~--~W~~~~~~~~~---~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~ 226 (859)
.=..++.+|.+++++ +|+.....+.- +...+++-...+.+++.=.+|..++-|+.+|..+|+..|-....++.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~K-- 153 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLK-- 153 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcC--
Confidence 357899999999975 79887764431 34445544567888887788878888999999999988766433332
Q ss_pred cCceEEecCcEEEEEEC-----CCCeEEEEEeecCe
Q 003001 227 VGDVALVSSDTLVTLDT-----TRSILVTVSFKNRK 257 (859)
Q Consensus 227 s~~~~~v~~~~lv~~d~-----~~~~l~v~~L~sg~ 257 (859)
+.. + .+ .+|.+- ....+++.||.+++
T Consensus 154 -G~~-~-~D--~a~F~i~~~~~g~~~i~~~Dli~~~ 184 (339)
T PF09910_consen 154 -GTL-V-HD--YACFGINNFHKGVSGIHCLDLISGK 184 (339)
T ss_pred -ceE-e-ee--eEEEeccccccCCceEEEEEccCCe
Confidence 211 1 11 123222 12357788888877
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.16 E-value=3.6e+02 Score=34.76 Aligned_cols=146 Identities=9% Similarity=0.067 Sum_probs=68.9
Q ss_pred EEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcE-----EEEE
Q 003001 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEI-----LWTR 170 (859)
Q Consensus 97 ~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~-----~W~~ 170 (859)
+.++++|+-..||-||+..-...=.....++.+ ....+......+.+++ +.||.|..+|...-.+ .|+.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~-----vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL-----VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCcc-----ceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 455557766789999987666555555444332 1111113332233444 4699999998765433 5665
Q ss_pred eccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCcc--CceEEe--cCcEEEEEECCCC
Q 003001 171 DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFV--GDVALV--SSDTLVTLDTTRS 246 (859)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s--~~~~~v--~~~~lv~~d~~~~ 246 (859)
....+.+.-..+-. ..-+.++..+.+| .+.-+|+..-...--.++..++.-. -.++.| -..+++|... +
T Consensus 1253 h~~~~~Iv~~slq~-~G~~elvSgs~~G----~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~--q 1325 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQR-QGLGELVSGSQDG----DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA--Q 1325 (1387)
T ss_pred cCCcccceeEEeec-CCCcceeeeccCC----eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc--c
Confidence 44332221111210 1122344434444 3666676543222222223333111 133333 3457777743 3
Q ss_pred eEEEEEee
Q 003001 247 ILVTVSFK 254 (859)
Q Consensus 247 ~l~v~~L~ 254 (859)
.+.+.++.
T Consensus 1326 ~ikIy~~~ 1333 (1387)
T KOG1517|consen 1326 LIKIYSLS 1333 (1387)
T ss_pred eEEEEecC
Confidence 45554443
No 183
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=42.84 E-value=5.4e+02 Score=29.04 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=69.4
Q ss_pred ecCEEEEEEcC--CCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCC-eEEE-Ee---CCEEEEEEcCCCcE
Q 003001 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILV-SS---KGCLHAVSSIDGEI 166 (859)
Q Consensus 94 ~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV-~~---~g~l~ald~~tG~~ 166 (859)
.++.+++++.. ...|+.||..+|+..-......... .... ..++ .+++ .. +..++.+|..+|+.
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~--~~~~-------spDg~~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG--APAF-------SPDGSKLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc--ceEE-------CCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence 45556665432 2579999999997654433322211 1111 1133 3444 22 34688899888764
Q ss_pred EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeeccc-CccCceEEecCcEEEEEECCC
Q 003001 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSG-GFVGDVALVSSDTLVTLDTTR 245 (859)
Q Consensus 167 ~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~-~~s~~~~~v~~~~lv~~d~~~ 245 (859)
.=-........ ....+..+..+++.+..++ ...++.+|+.+|+.. ++.... .......-.++..+++.+...
T Consensus 271 ~~l~~~~~~~~---~~~~s~dg~~l~~~s~~~g-~~~iy~~d~~~~~~~---~l~~~~~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 271 TRLTNGPGIDT---EPSWSPDGKSIAFTSDRGG-SPQIYMMDADGGEVR---RLTFRGGYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred EECCCCCCCCC---CEEECCCCCEEEEEECCCC-CceEEEEECCCCCEE---EeecCCCCccCeEECCCCCEEEEEEccC
Confidence 21111111111 1111234455655554432 236888898887642 111111 111111111334555554332
Q ss_pred --CeEEEEEeecCe
Q 003001 246 --SILVTVSFKNRK 257 (859)
Q Consensus 246 --~~l~v~~L~sg~ 257 (859)
..+++.++.++.
T Consensus 344 ~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 344 GGFNIAVMDLDGGG 357 (417)
T ss_pred CceEEEEEeCCCCC
Confidence 256777776654
No 184
>PRK04792 tolB translocation protein TolB; Provisional
Probab=41.25 E-value=6.3e+02 Score=29.39 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=71.3
Q ss_pred ecCEEEEEEcC--CCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCC-eEEE-Ee-CC--EEEEEEcCCCcE
Q 003001 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILV-SS-KG--CLHAVSSIDGEI 166 (859)
Q Consensus 94 ~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV-~~-~g--~l~ald~~tG~~ 166 (859)
.|+.+++++.. ...|+.+|..+|+..--....... ..... ..++ .+++ .. +| .|+.+|.++|+.
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~--~~~~w-------SPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN--GAPRF-------SPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc--CCeeE-------CCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 45667776543 246999999998764322222111 11111 1133 3433 32 44 599999988864
Q ss_pred EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCC
Q 003001 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRS 246 (859)
Q Consensus 167 ~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~ 246 (859)
. . .............+.++..+++.+..++ ...++.+|+.+|+...- ...... ........++..+++.....+
T Consensus 299 ~-~--lt~~~~~~~~p~wSpDG~~I~f~s~~~g-~~~Iy~~dl~~g~~~~L-t~~g~~-~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 299 T-R--ITRHRAIDTEPSWHPDGKSLIFTSERGG-KPQIYRVNLASGKVSRL-TFEGEQ-NLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred E-E--CccCCCCccceEECCCCCEEEEEECCCC-CceEEEEECCCCCEEEE-ecCCCC-CcCeeECCCCCEEEEEEecCC
Confidence 2 1 1111100111222334555655544332 24688899998875321 111111 111122223445555544333
Q ss_pred --eEEEEEeecCe
Q 003001 247 --ILVTVSFKNRK 257 (859)
Q Consensus 247 --~l~v~~L~sg~ 257 (859)
.++..++.++.
T Consensus 373 ~~~I~~~dl~~g~ 385 (448)
T PRK04792 373 KFNIARQDLETGA 385 (448)
T ss_pred ceEEEEEECCCCC
Confidence 46667777775
No 185
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=39.32 E-value=47 Score=34.46 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=32.6
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcE
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM 118 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~l 118 (859)
.+++-+-+.+. ..+|...|++.-+....+... .+.|..++-+.++.+.+...+ .+|+.
T Consensus 51 ~Gria~~~~~~------~~sa~~~W~q~~~~~~~l~L~-~PlG~~~~~l~~~~~~v~l~~-~~g~~ 108 (202)
T TIGR00548 51 DGKVGYISPRD------SGSGRFFWQQRNQGYYDLRLS-GPLGRGALRLTGREGAVSLED-NGGGR 108 (202)
T ss_pred eeeEEEECCCc------eeEEEEEEEECCCCceEEEEE-ccCCCcEEEEEEcCCEEEEEE-CCCCE
Confidence 44555555543 335566799984444334333 245666666666555666666 45655
No 186
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=39.20 E-value=3.3e+02 Score=25.57 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=48.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.+-|+|+|++..|..++ ..++++...-... +..+.....+...| +-.+|+|-.++. ...+|+..-...+
T Consensus 15 ~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~--v~~L~~~~~~~F~Y-~l~NGTVGvY~~--~~RlWRiKSK~~~ 83 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFK--GDEIVAEITETDK--VTSLCSLGGGRFAY-ALANGTVGVYDR--SQRLWRIKSKNQV 83 (111)
T ss_pred cceEEEecCCcEEEEEe--CCcEEEEEecccc--eEEEEEcCCCEEEE-EecCCEEEEEeC--cceeeeeccCCCe
Confidence 46699999999999997 5688998775544 44442223444555 444569999975 8899999865543
No 187
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=37.82 E-value=6.4e+02 Score=28.43 Aligned_cols=192 Identities=13% Similarity=0.178 Sum_probs=89.6
Q ss_pred EEEEEeCC-----C-EEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEE-EEcC--CC--eEEEEeCCCCcEeEEEe
Q 003001 55 RVVVSTEE-----N-VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVIT-LSSD--GS--TLRAWNLPDGQMVWESF 123 (859)
Q Consensus 55 ~Vyvat~~-----g-~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~-Vs~~--g~--~v~Ald~~tG~llW~~~ 123 (859)
.+|++|-. | .+.-||.++|++-=-+......+..-+...-.++.+| +-.. .+ ..+.||..+|++---.+
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~ 83 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR 83 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec
Confidence 46666543 2 3556676777643222222222222331122333444 3222 22 35677777898876554
Q ss_pred ccCccccCCcccccccccccCCC-eEEEE--eCCEEEEEEc-CCCcEEEEEec---cCcceeeee------EEEe-ecCC
Q 003001 124 LRGSKHSKPLLLVPTNLKVDKDS-LILVS--SKGCLHAVSS-IDGEILWTRDF---AAESVEVQQ------VIQL-DESD 189 (859)
Q Consensus 124 ~~~~~ls~~~~~~~~~~~~~~~~-~VvV~--~~g~l~ald~-~tG~~~W~~~~---~~~~~~~~~------~v~~-~~~~ 189 (859)
...+. .+..-+ .++.++ .|++. ..|.+..+-. ++|.+.=.... ..+.-..+| .... ..+.
T Consensus 84 ~~~~g--~~p~yv----svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 84 QTLPG--SPPCYV----SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred cccCC--CCCeEE----EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence 43322 111122 344455 45553 3777777766 34654321111 111000122 1111 2333
Q ss_pred eEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeec
Q 003001 190 QIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 190 ~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~s 255 (859)
.+++..+ |.. +++.+++..|...-......+.+-....++- .+.+.+|+..-+++.-+.....
T Consensus 158 ~l~v~DL-G~D--ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 158 YLVVPDL-GTD--RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEEeec-CCc--eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 4554333 433 4666677788876544333322222233332 4557777776677777777766
No 188
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.80 E-value=3.1e+02 Score=31.50 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=64.0
Q ss_pred EEcC-CCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcc--
Q 003001 101 LSSD-GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAES-- 176 (859)
Q Consensus 101 Vs~~-g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~-- 176 (859)
+|+. +.+||.||..++...-+.++.+.+- ++.+.. + ...++.. -|..+-.+|..+-+++=.+....-.
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt--Sl~ls~-----~-g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a 387 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPLGGRVT--SLDLSM-----D-GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA 387 (459)
T ss_pred eecccccceEEEeccCCceeeEeecCccee--eEeecc-----C-CeEEeeecCCCceeeeecccccEEEEeeccccccc
Confidence 4663 6789999999999999998877432 111111 1 2345554 3888888888887777666554211
Q ss_pred eeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 177 VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 177 ~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
....+++. +++.=|+++ |+..+.|+..+..+|+.....+
T Consensus 388 sDwtrvvf--Spd~~YvaA--GS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 388 SDWTRVVF--SPDGSYVAA--GSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred cccceeEE--CCCCceeee--ccCCCcEEEEEccCceEEEEec
Confidence 11123332 333334322 2233358889999998876654
No 189
>PRK04922 tolB translocation protein TolB; Provisional
Probab=37.33 E-value=7e+02 Score=28.74 Aligned_cols=148 Identities=13% Similarity=0.174 Sum_probs=70.6
Q ss_pred ecCEEEEEEcC--CCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCC-eEEE-Ee-C--CEEEEEEcCCCcE
Q 003001 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILV-SS-K--GCLHAVSSIDGEI 166 (859)
Q Consensus 94 ~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV-~~-~--g~l~ald~~tG~~ 166 (859)
.++.+++++.. ...|+.||..+|+..--...... . .. + ....++ .+++ .+ + ..|+.+|..+|+.
T Consensus 214 Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~-~-~~-~------~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 214 DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI-N-GA-P------SFSPDGRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC-c-cC-c------eECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence 46667776532 34799999999986533332211 1 01 1 112234 3433 32 3 3699999999875
Q ss_pred EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEE-ecCcEEEEEECCC
Q 003001 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTR 245 (859)
Q Consensus 167 ~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~-v~~~~lv~~d~~~ 245 (859)
.=-........ .+..+..+..+++.+..++ ...++.+|+.+|+...-. ........+.+ ..+..+++.....
T Consensus 285 ~~lt~~~~~~~---~~~~spDG~~l~f~sd~~g-~~~iy~~dl~~g~~~~lt---~~g~~~~~~~~SpDG~~Ia~~~~~~ 357 (433)
T PRK04922 285 TRLTNHFGIDT---EPTWAPDGKSIYFTSDRGG-RPQIYRVAASGGSAERLT---FQGNYNARASVSPDGKKIAMVHGSG 357 (433)
T ss_pred EECccCCCCcc---ceEECCCCCEEEEEECCCC-CceEEEEECCCCCeEEee---cCCCCccCEEECCCCCEEEEEECCC
Confidence 32111111111 1111234555655543322 235888898888643211 11111111111 1344555544332
Q ss_pred C--eEEEEEeecCe
Q 003001 246 S--ILVTVSFKNRK 257 (859)
Q Consensus 246 ~--~l~v~~L~sg~ 257 (859)
+ .+++.++.++.
T Consensus 358 ~~~~I~v~d~~~g~ 371 (433)
T PRK04922 358 GQYRIAVMDLSTGS 371 (433)
T ss_pred CceeEEEEECCCCC
Confidence 2 46777776665
No 190
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=36.82 E-value=68 Score=35.06 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=47.2
Q ss_pred CCEEEEEeCCCEEEEEECC-CCccceEEEcC-CCc--ceeeeeeeecCEEEEEEcCCCeEEEEeCC-CCcEeEEEeccCc
Q 003001 53 RKRVVVSTEENVIASLDLR-HGEIFWRHVLG-IND--VVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRGS 127 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~-tG~ilWR~~l~-~~~--~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~-tG~llW~~~~~~~ 127 (859)
.+.||.++++|.+.+-|.+ .++-+|+..-- ..+ .|... +...-.++.|+.+..++.||.. =|+++-+..+.++
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss--~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GG 255 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSS--PPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGG 255 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecC--CCCCceEEEeccccceeeeehhcccCccccCccccc
Confidence 4679999999999999999 88889984321 111 11111 1122355557788899999986 4555544444433
No 191
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=35.65 E-value=6.5e+02 Score=27.88 Aligned_cols=160 Identities=15% Similarity=0.163 Sum_probs=87.9
Q ss_pred cCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcC--CCeEEEEeCCC
Q 003001 38 IGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD--GSTLRAWNLPD 115 (859)
Q Consensus 38 vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~--g~~v~Ald~~t 115 (859)
-|++..-.|+. ++..+.+.+++..|.-.|..+|+.+=...-..-+ +...........+.-++. +..+|-++..|
T Consensus 14 ~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG-~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 14 NGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG-VDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeeccccc-ccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 35555445652 4667888899999999999999887665543321 222212233333433443 56899999999
Q ss_pred CcEeEEEeccCccccCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcc--e--eeeeEEEe-ecC
Q 003001 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAES--V--EVQQVIQL-DES 188 (859)
Q Consensus 116 G~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~--~--~~~~~v~~-~~~ 188 (859)
-+-+--+......+ .++.+.| .++.|+.+ |.+++ +|..+..... + ....+. + ...
T Consensus 90 NkylRYF~GH~~~V-~sL~~sP-------~~d~FlS~S~D~tvr---------LWDlR~~~cqg~l~~~~~pi~-AfDp~ 151 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRV-NSLSVSP-------KDDTFLSSSLDKTVR---------LWDLRVKKCQGLLNLSGRPIA-AFDPE 151 (311)
T ss_pred CceEEEcCCCCceE-EEEEecC-------CCCeEEecccCCeEE---------eeEecCCCCceEEecCCCcce-eECCC
Confidence 98887777665543 2333333 24566642 55554 4655533211 1 011111 2 245
Q ss_pred CeEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003001 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 189 ~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v 220 (859)
|.+|+++..+. .++++-+..-.+.+--...+
T Consensus 152 GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i 182 (311)
T KOG1446|consen 152 GLIFALANGSE-LIKLYDLRSFDKGPFTTFSI 182 (311)
T ss_pred CcEEEEecCCC-eEEEEEecccCCCCceeEcc
Confidence 66666665443 56666554444555544433
No 192
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=35.60 E-value=8e+02 Score=28.90 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=93.9
Q ss_pred eccCCCEEEEEeC---CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 49 QKTGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 49 ~~~~~~~Vyvat~---~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
|...++|||..|+ -|.|++.|. +|+-+-|+.-=.+--...+ -..|..+|+ +. +|.++.+|+++-++- .....
T Consensus 231 PmIV~~RvYFlsD~eG~GnlYSvdl-dGkDlrrHTnFtdYY~R~~-nsDGkrIvF-q~-~GdIylydP~td~le-kldI~ 305 (668)
T COG4946 231 PMIVGERVYFLSDHEGVGNLYSVDL-DGKDLRRHTNFTDYYPRNA-NSDGKRIVF-QN-AGDIYLYDPETDSLE-KLDIG 305 (668)
T ss_pred ceEEcceEEEEecccCccceEEecc-CCchhhhcCCchhcccccc-CCCCcEEEE-ec-CCcEEEeCCCcCcce-eeecC
Confidence 5556889998886 488999997 6877766542111000011 124555666 54 457999999886653 22222
Q ss_pred Cccc--cCCcccc-ccc----ccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEeccCc-ceeeeeEEEeecCCeEEEEEe
Q 003001 126 GSKH--SKPLLLV-PTN----LKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFAAE-SVEVQQVIQLDESDQIYVVGY 196 (859)
Q Consensus 126 ~~~l--s~~~~~~-~~~----~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~v~~~~~~~vyvv~~ 196 (859)
-+.. .....++ ++. .... +|+.++ .+-|+....+.-.|-.+ +.+.+ .....+. ...+..+.+...
T Consensus 306 lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSRGkaFi~~~~~~~~i---qv~~~~~VrY~r~--~~~~e~~vigt~ 379 (668)
T COG4946 306 LPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSRGKAFIMRPWDGYSI---QVGKKGGVRYRRI--QVDPEGDVIGTN 379 (668)
T ss_pred CccccccccccccCHHHhhhhhccC-CCcEEEEEecCcEEEECCCCCeeE---EcCCCCceEEEEE--ccCCcceEEecc
Confidence 1110 0000111 000 0111 344444 36777777765544322 22211 1222222 123334443344
Q ss_pred cCCceeEEEEEEcCCCceeeeeeeecccCccC--ceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 197 AGSSQFHAYQINAMNGELLNHETAAFSGGFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~--~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|. .+..+|..+|++..-. .++.. .+-+--++..+++..++..+.++++.+|.
T Consensus 380 dgD---~l~iyd~~~~e~kr~e-----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 380 DGD---KLGIYDKDGGEVKRIE-----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCc---eEEEEecCCceEEEee-----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 454 4788899898854222 12221 11111222333343456789999999887
No 193
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=34.80 E-value=8.2e+02 Score=28.80 Aligned_cols=195 Identities=14% Similarity=0.148 Sum_probs=91.7
Q ss_pred eeecCEEEEEEcC-C-CeEEEEeCCCCcEeEE-EeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEE
Q 003001 92 IALGKYVITLSSD-G-STLRAWNLPDGQMVWE-SFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEIL 167 (859)
Q Consensus 92 ~~~~~~~V~Vs~~-g-~~v~Ald~~tG~llW~-~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~ 167 (859)
..+++.+.+++.. | |+++.-|. +|+-+-+ +.... -.+. .+..||.-+|+ ..|.++.+|+++-++.
T Consensus 232 mIV~~RvYFlsD~eG~GnlYSvdl-dGkDlrrHTnFtd-YY~R---------~~nsDGkrIvFq~~GdIylydP~td~le 300 (668)
T COG4946 232 MIVGERVYFLSDHEGVGNLYSVDL-DGKDLRRHTNFTD-YYPR---------NANSDGKRIVFQNAGDIYLYDPETDSLE 300 (668)
T ss_pred eEEcceEEEEecccCccceEEecc-CCchhhhcCCchh-cccc---------ccCCCCcEEEEecCCcEEEeCCCcCcce
Confidence 3478888888763 2 68999987 4554433 33322 2211 12235655555 6889999998886542
Q ss_pred -EEEeccCcce-eeeeEEE--------eecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcE
Q 003001 168 -WTRDFAAESV-EVQQVIQ--------LDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDT 237 (859)
Q Consensus 168 -W~~~~~~~~~-~~~~~v~--------~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~ 237 (859)
=...++...- ...+.+. +..++..++...-| +...++.-.|-.+ ++..+.++-=....+..+-
T Consensus 301 kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG----kaFi~~~~~~~~i---qv~~~~~VrY~r~~~~~e~ 373 (668)
T COG4946 301 KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG----KAFIMRPWDGYSI---QVGKKGGVRYRRIQVDPEG 373 (668)
T ss_pred eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC----cEEEECCCCCeeE---EcCCCCceEEEEEccCCcc
Confidence 2222121100 0000000 11233333322222 2333333332211 1111111100111122233
Q ss_pred EEEEECCCCeEEEEEeecCeeeEEEEeecCcCCCCCCceEEeecCCccceEEEecCcEEEEEEe-cCCcEEEEEee
Q 003001 238 LVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRLT-SEDKLEVVHKV 312 (859)
Q Consensus 238 lv~~d~~~~~l~v~~L~sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~ 312 (859)
++..+.+...+-+.+.+++. ++.+- ++.+.++.+....+|.+++-.+++..|.-++ ++|.+.+.+.-
T Consensus 374 ~vigt~dgD~l~iyd~~~~e--~kr~e------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS 441 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGE--VKRIE------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS 441 (668)
T ss_pred eEEeccCCceEEEEecCCce--EEEee------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc
Confidence 44555555578888888776 34332 1223444455555667777767755444444 47777766543
No 194
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=34.78 E-value=5.1e+02 Score=28.72 Aligned_cols=75 Identities=21% Similarity=0.169 Sum_probs=44.8
Q ss_pred cCCCEEEEEeC-CCEEEEEECC--CCccceE----EEcCCCcceeeeeeeecCEEEEEEc-C-CCeEEEEeCCCCcEeEE
Q 003001 51 TGRKRVVVSTE-ENVIASLDLR--HGEIFWR----HVLGINDVVDGIDIALGKYVITLSS-D-GSTLRAWNLPDGQMVWE 121 (859)
Q Consensus 51 ~~~~~Vyvat~-~g~l~ALd~~--tG~ilWR----~~l~~~~~i~~l~~~~~~~~V~Vs~-~-g~~v~Ald~~tG~llW~ 121 (859)
++++.+|++.. .+.+.+++.. +|.+-=| ..-..++..+++ ....++.+.++. . |+.|..|++. |+++=+
T Consensus 172 pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~-~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~ 249 (307)
T COG3386 172 PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM-AVDADGNLWVAAVWGGGRVVRFNPD-GKLLGE 249 (307)
T ss_pred CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCce-EEeCCCCEEEecccCCceEEEECCC-CcEEEE
Confidence 45667888854 5888887553 3443332 211122233455 234555555332 2 3489999998 999999
Q ss_pred EeccCc
Q 003001 122 SFLRGS 127 (859)
Q Consensus 122 ~~~~~~ 127 (859)
..++..
T Consensus 250 i~lP~~ 255 (307)
T COG3386 250 IKLPVK 255 (307)
T ss_pred EECCCC
Confidence 998743
No 195
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=34.36 E-value=6.8e+02 Score=27.75 Aligned_cols=155 Identities=10% Similarity=0.008 Sum_probs=84.9
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCE--EEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKY--VITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~--~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++.+||.++-++.+--.|..+|++.==..-+ ..+...+-..+.. .+.-|+-+.+|+-||...-.++=+.+++....
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvY 160 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVY 160 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCeeeeeecc--cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceee
Confidence 5677999999999999999999653211111 1233332222222 33325557899999999999988888876554
Q ss_pred cCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
+ +.+ . ....+| ..+..|..+++++|-.--+.-...-.. ..+++-...+..-|++|--.| ++..-.
T Consensus 161 a--~Dv-------~-~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~-Q~R~va~f~d~~~~alGsiEG---rv~iq~ 226 (347)
T KOG0647|consen 161 A--ADV-------L-YPMAVVATAERHIAVYNLENPPTEFKRIESPLKW-QTRCVACFQDKDGFALGSIEG---RVAIQY 226 (347)
T ss_pred e--hhc-------c-CceeEEEecCCcEEEEEcCCCcchhhhhcCcccc-eeeEEEEEecCCceEeeeecc---eEEEEe
Confidence 1 111 1 123333 468889999998886433321111111 112221223333444443322 466556
Q ss_pred cCCCceeeeeeeec
Q 003001 209 AMNGELLNHETAAF 222 (859)
Q Consensus 209 ~~tG~~~w~~~v~~ 222 (859)
...|.+.....+.+
T Consensus 227 id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 227 IDDPNPKDNFTFKC 240 (347)
T ss_pred cCCCCccCceeEEE
Confidence 66665543333333
No 196
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=34.34 E-value=6.5e+02 Score=27.53 Aligned_cols=175 Identities=13% Similarity=0.122 Sum_probs=86.6
Q ss_pred EEEEEECCCCccceEEEcCCCcceeeeeee--ec-----CEEEEEEcC---------C-CeEEEEeCCCC-------cEe
Q 003001 64 VIASLDLRHGEIFWRHVLGINDVVDGIDIA--LG-----KYVITLSSD---------G-STLRAWNLPDG-------QMV 119 (859)
Q Consensus 64 ~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~--~~-----~~~V~Vs~~---------g-~~v~Ald~~tG-------~ll 119 (859)
.|--+|+.+.+++=+..|+....+..+... .+ ...++||+. . |+++-++...+ +++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 456678888888877777766433322111 11 345555432 1 68999998885 333
Q ss_pred EEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCc-EEEEEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 120 W~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
.+....+++. .+ ... .+.+++..+++|+.++....+ .+=......+.. ...+ ...++.+++.....
T Consensus 83 ~~~~~~g~V~-----ai----~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~-i~sl--~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 83 HSTEVKGPVT-----AI----CSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFY-ITSL--SVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEESS-EE-----EE----EEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSS-EEEE--EEETTEEEEEESSS
T ss_pred EEEeecCcce-----Eh----hhh-CCEEEEeecCEEEEEEccCcccchhhheecceEE-EEEE--eccccEEEEEEccc
Confidence 3444444332 11 112 466777778888888877777 221111111111 1122 13455666543333
Q ss_pred CceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEee
Q 003001 199 SSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~ 254 (859)
++.++.++..+-+...-.+-..+..+....+++.++.+++.|.. |++++....
T Consensus 150 --sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~-gnl~~l~~~ 202 (321)
T PF03178_consen 150 --SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD-GNLFVLRYN 202 (321)
T ss_dssp --SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT-SEEEEEEE-
T ss_pred --CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC-CeEEEEEEC
Confidence 24555666533223322222223333333333344577788864 777777664
No 197
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.19 E-value=2.9e+02 Score=35.40 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=40.0
Q ss_pred EEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEE
Q 003001 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 97 ~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~ 170 (859)
-.|+|+..+|+|.++|+.+|.++.-+- +...++ .+..... +....+..+ -||+..+-|+-.+. .|+.
T Consensus 583 ~~VyvgandGmLhaFd~~tG~E~fA~~-P~avl~-~l~~~t~--~~y~~h~yy--VDg~p~~~da~~ng-~wrs 649 (1036)
T COG3419 583 PVVYVGANDGMLHAFDANTGSERFAYV-PSAVLS-TLHSLTA--PGYTAHQYY--VDGSPTAADAYDNG-QWRS 649 (1036)
T ss_pred ceEEEecCCceeeeccCCccceeeecC-cHHHHh-hhhhhcC--CCcccccce--ecCCceeehhhcCC-cceE
Confidence 378889888999999999999988764 222221 0111000 000011222 38888888877776 7774
No 198
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=34.17 E-value=8.2e+02 Score=28.59 Aligned_cols=137 Identities=11% Similarity=0.069 Sum_probs=68.5
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEE-EcCCCeEEEEeCCC-------CcEeEEEec
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPD-------GQMVWESFL 124 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~V-s~~g~~v~Ald~~t-------G~llW~~~~ 124 (859)
+..|+.+|.+|.||.--..||+.+=-..-- --++.-+ ...+++-+++ ++.+|.|++|+..+ +.+.=....
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aH-YQ~ITcL-~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAH-YQSITCL-KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhh-ccceeEE-EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 334666669999999999999876322100 0123334 2345665555 45577899997542 211111111
Q ss_pred cCccccCCccccccccccc-CCCeEEEEe-CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 125 RGSKHSKPLLLVPTNLKVD-KDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~-~~~~VvV~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
..-.+ ++........ .+..++-.+ |..+...|...|.++=+...+.+-. .++-..++..+|+.+-.|
T Consensus 171 ~~Htl----sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~---av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 171 SDHTL----SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIK---AVALDPAERVVYIGTEEG 239 (476)
T ss_pred ccCcc----eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcce---eEEEcccccEEEecCCcc
Confidence 11111 1110000000 122333333 7788888888888887776664322 222123555666543333
No 199
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=34.13 E-value=5.3e+02 Score=26.60 Aligned_cols=66 Identities=24% Similarity=0.395 Sum_probs=39.0
Q ss_pred CceEEEEECCCCcEEEEEecccCCCCCCCceeeEEeeecCcccCCCCCCeEEEEEE-eCCCCCCCcEEEEEEccCCcee
Q 003001 496 ARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGR-CGVSSKAPAILSFVDTYTGKEL 573 (859)
Q Consensus 496 ~Gkl~alds~~G~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~~~~~~~~~~d~~tG~~~ 573 (859)
-|+||--|..+|+. |++.+.+.+....| +.+-|- |+.-.++|++. .|. -+.-|.+|.+|..||+..
T Consensus 87 iGkIYIkn~~~~~~-~~L~i~~~~~k~sP---K~i~Wi-------DD~~L~vIIG~a~GT-vS~GGnLy~~nl~tg~~~ 153 (200)
T PF15525_consen 87 IGKIYIKNLNNNNW-WSLQIDQNEEKYSP---KYIEWI-------DDNNLAVIIGYAHGT-VSKGGNLYKYNLNTGNLT 153 (200)
T ss_pred ceeEEEEecCCCce-EEEEecCcccccCC---ceeEEe-------cCCcEEEEEccccce-EccCCeEEEEEccCCcee
Confidence 47888888877776 88877653211111 134552 23444455543 210 144578999999999865
No 200
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=33.94 E-value=7.9e+02 Score=28.35 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=58.9
Q ss_pred EEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCccccccc--cc
Q 003001 64 VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTN--LK 141 (859)
Q Consensus 64 ~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~--~~ 141 (859)
.|.-.| .+|+++|+..++.+ .+-.+.-...+.+|+|..+| .++-+|.. |+. ++.+..+.. ...+.... ..
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~-~iv~~~wt~~e~LvvV~~dG-~v~vy~~~-G~~--~fsl~~~i~--~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSG-RIVGMGWTDDEELVVVQSDG-TVRVYDLF-GEF--QFSLGEEIE--EEKVLECRIFAI 133 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCC-CEEEEEECCCCeEEEEEcCC-EEEEEeCC-Cce--eechhhhcc--ccCccccccccc
Confidence 366666 47999999998873 34433223567788888754 89999976 777 666654432 11111100 01
Q ss_pred ccC-CCeEEEEeCCEEEEEEcCCCcEEEEE
Q 003001 142 VDK-DSLILVSSKGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 142 ~~~-~~~VvV~~~g~l~ald~~tG~~~W~~ 170 (859)
... .|.++...+++++.++.-+...+|+.
T Consensus 134 ~~~~~GivvLt~~~~~~~v~n~~~~~~~~~ 163 (410)
T PF04841_consen 134 WFYKNGIVVLTGNNRFYVVNNIDEPVKLRR 163 (410)
T ss_pred ccCCCCEEEECCCCeEEEEeCccccchhhc
Confidence 111 34444446888999976665555553
No 201
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=33.92 E-value=1.9e+02 Score=34.57 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=44.4
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
.++++++|++| |.-+|+.+|+++=+-..+....|..+.....+++.+ +++.| ++-.++.. |++.-..+.+
T Consensus 175 ~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWV-GTdqG-v~~~e~~G----~~~sn~~~~l 244 (671)
T COG3292 175 NGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWV-GTDQG-VYLQEAEG----WRASNWGPML 244 (671)
T ss_pred cCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEE-Eeccc-eEEEchhh----ccccccCCCC
Confidence 66799999999 888999999987655444323343331223444444 55543 77777654 8777665544
No 202
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=33.48 E-value=6.7e+02 Score=27.39 Aligned_cols=187 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
.++.+|..+.+...-..=+-+|+.+=... +-.+++=...+--....++-++.+...+.||..+|+.+-.+....++ +
T Consensus 21 eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~V--k 97 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPV--K 97 (327)
T ss_pred CCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCee--E
Q ss_pred CcccccccccccCCCeEEEEe-------CCEEEEEEcC-------CCcEEEEEeccCcceeeeeEEEeecCCeEEEEEec
Q 003001 132 PLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSI-------DGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYA 197 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~-------tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~ 197 (859)
...+-. ++.+++.. .+.|..+|.. +-++.-....+. ..+-.++...-+..++...-+
T Consensus 98 ~~~F~~-------~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 98 RVDFSF-------GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHED 168 (327)
T ss_pred EEeecc-------CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCC
Q ss_pred CCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeec
Q 003001 198 GSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 198 g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~s 255 (859)
|. +..+|+.+|+.+-+..-.-.+.++.-++....-+++....+ .+-...|..+
T Consensus 169 G~----is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D-ttakl~D~~t 221 (327)
T KOG0643|consen 169 GS----ISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD-TTAKLVDVRT 221 (327)
T ss_pred Cc----EEEEEcccCceeeechhhhccccccccccCCcceEEecccC-ccceeeeccc
No 203
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=33.13 E-value=94 Score=35.20 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=40.6
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccC
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~ 126 (859)
.++..|++++.+..|.......=-.+=..-|+-..-+..+. ...+..+.=++++++||.||-.+|+.+=...+.+
T Consensus 161 ~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is-l~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 161 PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS-LTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee-eccCceeeecCCCCcEEEEecccCCcccccchhH
Confidence 34566777777777766654322222122222111122221 2334443324446799999999999995555543
No 204
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=32.69 E-value=7.8e+02 Score=27.94 Aligned_cols=170 Identities=14% Similarity=0.188 Sum_probs=90.0
Q ss_pred cccEeEEEec---------cCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCE
Q 003001 28 VGLMDWHQQY---------IGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKY 97 (859)
Q Consensus 28 ~G~~dW~~~~---------vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~ 97 (859)
-.+..||.++ +|=++.-.++ +.+.-...++.++.+.-.|.+||++.=. +..- ..+.++.+..-.-
T Consensus 132 ~~rPeWHapwKl~rVi~gHlgWVr~vavd---P~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi~~vr~vavS~rHp 206 (460)
T KOG0285|consen 132 MPRPEWHAPWKLYRVISGHLGWVRSVAVD---PGNEWFATGSADRTIKIWDLATGQLKLT--LTGHIETVRGVAVSKRHP 206 (460)
T ss_pred CCCccccCcceehhhhhhccceEEEEeeC---CCceeEEecCCCceeEEEEcccCeEEEe--ecchhheeeeeeecccCc
Confidence 3567888765 1222222233 2344466677899999999999987543 3222 1223442111111
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCc
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAE 175 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~ 175 (859)
-++-.+.++.|-+||...-+.+-++...-..+ ..+.+-| .-++++. .|.....-|..+-..+-.....
T Consensus 207 YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V-~~L~lhP-------Tldvl~t~grDst~RvWDiRtr~~V~~l~GH-- 276 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGV-YCLDLHP-------TLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-- 276 (460)
T ss_pred eEEEecCCCeeEEEechhhhhHHHhcccccee-EEEeccc-------cceeEEecCCcceEEEeeecccceEEEecCC--
Confidence 33335668899999999999988887653222 1111222 2345553 2555555454444444333221
Q ss_pred ceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceee
Q 003001 176 SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLN 216 (859)
Q Consensus 176 ~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w 216 (859)
.....+++-...+..||-.+.++ .+--.|+..|+..-
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~----tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDS----TVRLWDLRAGKTMI 313 (460)
T ss_pred CCcceeEEeecCCCceEEecCCc----eEEEeeeccCceeE
Confidence 11223333234567777655554 25556777776653
No 205
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=31.58 E-value=1.2e+02 Score=33.29 Aligned_cols=63 Identities=17% Similarity=0.344 Sum_probs=44.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeee-ecCEEEEEEcCCCeEEEEeCCC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPD 115 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~t 115 (859)
++..||-++.+-.|++.|.+||+..-|++....- +..+.+. .|-.+|.-++++++++.||...
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~-vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF-VNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccce-eeecCccccCCeEEEecCCCceEEEEeecc
Confidence 4666888899999999999999999998876652 2233222 2333444345678999999863
No 206
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=30.11 E-value=6e+02 Score=28.61 Aligned_cols=102 Identities=19% Similarity=0.333 Sum_probs=55.1
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEec
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~~ 172 (859)
..+.+++-|+.+.+|+.||-+||+++=..-... +..+-+ +++|.+..-+.+---.+|....
T Consensus 245 yd~rviisGSSDsTvrvWDv~tge~l~tlihHc------------------eaVLhlrf~ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 245 YDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC------------------EAVLHLRFSNGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred ccceEEEecCCCceEEEEeccCCchhhHHhhhc------------------ceeEEEEEeCCEEEEecCCceeEEEeccC
Confidence 445544434457899999999998873322221 122222 3567666666555567898877
Q ss_pred cCcceeeeeE-------EEe-ecCCeEEEEEecCCceeEEEEEEcCCCceeee
Q 003001 173 AAESVEVQQV-------IQL-DESDQIYVVGYAGSSQFHAYQINAMNGELLNH 217 (859)
Q Consensus 173 ~~~~~~~~~~-------v~~-~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~ 217 (859)
+.... ..++ +.+ ..++. |+++..|.. .+-..+..||+-+..
T Consensus 307 ps~it-~rrVLvGHrAaVNvVdfd~k-yIVsASgDR--TikvW~~st~efvRt 355 (499)
T KOG0281|consen 307 PTDIT-LRRVLVGHRAAVNVVDFDDK-YIVSASGDR--TIKVWSTSTCEFVRT 355 (499)
T ss_pred chHHH-HHHHHhhhhhheeeeccccc-eEEEecCCc--eEEEEeccceeeehh
Confidence 65221 1111 111 12333 556666643 344556667766543
No 207
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.50 E-value=8.3e+02 Score=27.26 Aligned_cols=186 Identities=15% Similarity=0.226 Sum_probs=94.0
Q ss_pred eeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcC---CCcceeeeee-eecCEEEEEEcCCCeEEEEeCCCCcEeE
Q 003001 45 VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLG---INDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQMVW 120 (859)
Q Consensus 45 ~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~---~~~~i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~tG~llW 120 (859)
.|..|.. ...++-++++|.+...+..+ |...=. ....+..+.. +.+.-.+.|+++ ..+|.||.-.|+...
T Consensus 90 ~F~~~~S-~shLlS~sdDG~i~iw~~~~----W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D-~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 90 KFYPPLS-KSHLLSGSDDGHIIIWRVGS----WELLKSLKAHKGQVTDLSIHPSGKLALSVGGD-QVLRTWNLVRGRVAF 163 (362)
T ss_pred EecCCcc-hhheeeecCCCcEEEEEcCC----eEEeeeecccccccceeEecCCCceEEEEcCC-ceeeeehhhcCccce
Confidence 4554533 33689999999999998765 632211 0122333322 246667778875 589999999999988
Q ss_pred EEeccCccccCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 121 ~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
-.++....- .+. ....|+-|+ ....++-.+-.++-++.=+...+...+ ++.-...+.+++ |.+.+
T Consensus 164 v~~L~~~at-----~v~----w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l----~~~~l~~~~L~v-G~d~~ 229 (362)
T KOG0294|consen 164 VLNLKNKAT-----LVS----WSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRIL----CATFLDGSELLV-GGDNE 229 (362)
T ss_pred eeccCCcce-----eeE----EcCCCCEEEEEeccEEEEEecccHhHhhhhhccccce----eeeecCCceEEE-ecCCc
Confidence 888765431 111 111333222 233333333322222222211110000 111124455554 44432
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccCceEEecC---cEEEEEECCCCeEEEEEeecC
Q 003001 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSS---DTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~---~~lv~~d~~~~~l~v~~L~sg 256 (859)
.+...|..++.+.-+..-... -+- ..+.+.+ .+++.+. +.|.+.+=++...
T Consensus 230 ---~i~~~D~ds~~~~~~~~AH~~-RVK-~i~~~~~~~~~~lvTaS-SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 ---WISLKDTDSDTPLTEFLAHEN-RVK-DIASYTNPEHEYLVTAS-SDGFIKVWDIDME 283 (362)
T ss_pred ---eEEEeccCCCccceeeecchh-hee-eeEEEecCCceEEEEec-cCceEEEEEcccc
Confidence 588889888777766532111 111 2222332 2454444 4577777776654
No 208
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=28.97 E-value=1.4e+03 Score=29.58 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=43.1
Q ss_pred cccCCCeEEEE--eCCEEEEEEcC-CCcEEEEEecc---CcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 141 KVDKDSLILVS--SKGCLHAVSSI-DGEILWTRDFA---AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 141 ~~~~~~~VvV~--~~g~l~ald~~-tG~~~W~~~~~---~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
.++.++..|.+ .+|.|+.+-+. +|+.+|..... -+......++-...+|.+|+.+-.|.+ ++..|+...
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdS--qLi~L~~e~ 338 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDS--QLIKLNTEP 338 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCceEEEeccCCce--eeEEccccC
Confidence 44556666665 38999999988 99999995332 112222222223478888887766654 566666543
No 209
>PRK02889 tolB translocation protein TolB; Provisional
Probab=27.21 E-value=1e+03 Score=27.43 Aligned_cols=197 Identities=9% Similarity=-0.000 Sum_probs=0.0
Q ss_pred ccCCCEEEEEeCCCE---EEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCe--EEEEeCCCCcEeEEEec
Q 003001 50 KTGRKRVVVSTEENV---IASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGST--LRAWNLPDGQMVWESFL 124 (859)
Q Consensus 50 ~~~~~~Vyvat~~g~---l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~--v~Ald~~tG~llW~~~~ 124 (859)
++++++++..+..+. |+..|..+|+..=-...+........ .+.++.+++....++. ++.+|..+|. .-+..-
T Consensus 204 SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~ 281 (427)
T PRK02889 204 SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAW-SPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ 281 (427)
T ss_pred cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEE-CCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC
Q ss_pred cCccccCCcccccccccccCCCeEEEEe-----CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS-----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~~-----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
..... ......+ ++.-+++. .-.++.++..+|+..=-........ ....+..+..+++.+..++
T Consensus 282 ~~~~~-~~~~wSp-------DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~---~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 282 SSGID-TEPFFSP-------DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT---SPRISPDGKLLAYISRVGG 350 (427)
T ss_pred CCCCC-cCeEEcC-------CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC---ceEECCCCCEEEEEEccCC
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCe--EEEEEeecCeeeEEEEee
Q 003001 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSI--LVTVSFKNRKIAFQETHL 265 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~--l~v~~L~sg~~~~~~~~l 265 (859)
.. .++.+|+.+|+ ...+.............++..+++.....|. +++.++..+. .+.++.
T Consensus 351 ~~-~I~v~d~~~g~---~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~--~~~l~~ 412 (427)
T PRK02889 351 AF-KLYVQDLATGQ---VTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI--KQRLSV 412 (427)
T ss_pred cE-EEEEEECCCCC---eEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc--eEEeec
No 210
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=27.06 E-value=8.7e+02 Score=26.68 Aligned_cols=210 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred ccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeE
Q 003001 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTL 108 (859)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v 108 (859)
|+.||=+++--.++......++..++.+++..-... |-+.|.++=|.. +-...+.......++...+-++.++.+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d----d~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD----DIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccC----ccccCceeeeee-ccceEecceEEccCCceEEeccccceE
Q ss_pred EEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEecc-CcceeeeeEEEe
Q 003001 109 RAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFA-AESVEVQQVIQL 185 (859)
Q Consensus 109 ~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~v~~ 185 (859)
|.||..+|+..=++....... +.- ....++.-+|.+ |.++--.|...+...=..+.. .....-.+..+.
T Consensus 88 rlWDl~~g~~t~~f~GH~~dV-----lsv---a~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDV-----LSV---AFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred EEEEecCCcEEEEEEecCCce-----EEE---EecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCC
Q ss_pred ecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 186 DESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 186 ~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+-.+.-.+.++ .|-..|+.+=+..-.. ....+.-..|-+--++-+.+.-...|.+..-+|..++
T Consensus 160 ~~~p~Ivs~s~Dk----tvKvWnl~~~~l~~~~--~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 160 ESNPIIVSASWDK----TVKVWNLRNCQLRTTF--IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CCCcEEEEccCCc----eEEEEccCCcchhhcc--ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
No 211
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=27.04 E-value=3e+02 Score=29.34 Aligned_cols=89 Identities=10% Similarity=0.043 Sum_probs=50.8
Q ss_pred cccccEeEEEeccCceeeeeeee--eccCCCEEEEEeCCCEEEEEECCCCccceE--EEcCCCcceeeee-----eeecC
Q 003001 26 DQVGLMDWHQQYIGKVKHAVFHT--QKTGRKRVVVSTEENVIASLDLRHGEIFWR--HVLGINDVVDGID-----IALGK 96 (859)
Q Consensus 26 dq~G~~dW~~~~vG~~~~~~f~~--~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR--~~l~~~~~i~~l~-----~~~~~ 96 (859)
++.....+..+.-|......+.. -.+..+.+|..+..|.||-||+.||.--.- -.+... ..+.+ -+..+
T Consensus 9 ~~p~~~~~~~~vtGL~~ge~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~a--l~g~~~gvDFNP~aD 86 (236)
T PF14339_consen 9 DNPAKVTSSVAVTGLAAGESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVA--LSGTAFGVDFNPAAD 86 (236)
T ss_pred CCCcceeccEEeecccCCCeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeeccccccc--ccCceEEEecCcccC
Confidence 34445556655555221111111 123578899999999999999999984333 112211 11110 02455
Q ss_pred EEEEEEcCCCeEEEEeCCCCc
Q 003001 97 YVITLSSDGSTLRAWNLPDGQ 117 (859)
Q Consensus 97 ~~V~Vs~~g~~v~Ald~~tG~ 117 (859)
++=+||..| +-.-+|+.+|.
T Consensus 87 RlRvvs~~G-qNlR~npdtGa 106 (236)
T PF14339_consen 87 RLRVVSNTG-QNLRLNPDTGA 106 (236)
T ss_pred cEEEEccCC-cEEEECCCCCC
Confidence 666777765 55557888888
No 212
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=26.77 E-value=9.7e+02 Score=27.13 Aligned_cols=164 Identities=18% Similarity=0.133 Sum_probs=0.0
Q ss_pred ccCCCEEEEEeC---C-CEEEEEECCCC---ccceEEEcCCCcceeeeeeeecCEEEEEEcCC---CeEEEEeCCCCcE-
Q 003001 50 KTGRKRVVVSTE---E-NVIASLDLRHG---EIFWRHVLGINDVVDGIDIALGKYVITLSSDG---STLRAWNLPDGQM- 118 (859)
Q Consensus 50 ~~~~~~Vyvat~---~-g~l~ALd~~tG---~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g---~~v~Ald~~tG~l- 118 (859)
+.+++.+++... . ..++.+|..++ ...|+...+.........-..++.+++++..+ +.|.+.+..+...
T Consensus 235 s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~ 314 (414)
T PF02897_consen 235 SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA 314 (414)
T ss_dssp -TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG
T ss_pred cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc
Q ss_pred eEEEeccCccccCCcccccccccccCCCeEEEEe----CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEE
Q 003001 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (859)
Q Consensus 119 lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv 194 (859)
.|+..+..+. ....+.. .....+.+++.. ..+|..++...|...-....+.... ...+......+.+++.
T Consensus 315 ~~~~~l~~~~--~~~~l~~---~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~-v~~~~~~~~~~~~~~~ 388 (414)
T PF02897_consen 315 EWWTVLIPED--EDVSLED---VSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGS-VSGVSGDFDSDELRFS 388 (414)
T ss_dssp GEEEEEE--S--SSEEEEE---EEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSE-EEEEES-TT-SEEEEE
T ss_pred cceeEEcCCC--CceeEEE---EEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceE-EeccCCCCCCCEEEEE
Q ss_pred EecCCceeEEEEEEcCCCcee-eeee
Q 003001 195 GYAGSSQFHAYQINAMNGELL-NHET 219 (859)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~-w~~~ 219 (859)
--.-..-..++.+|+.+|+.. |+.+
T Consensus 389 ~ss~~~P~~~y~~d~~t~~~~~~k~~ 414 (414)
T PF02897_consen 389 YSSFTTPPTVYRYDLATGELTLLKQQ 414 (414)
T ss_dssp EEETTEEEEEEEEETTTTCEEEEEE-
T ss_pred EeCCCCCCEEEEEECCCCCEEEEEeC
No 213
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=26.42 E-value=3.7e+02 Score=24.95 Aligned_cols=59 Identities=15% Similarity=0.374 Sum_probs=38.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEc-CCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEE
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVL-GINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWES 122 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l-~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~ 122 (859)
+...+..+.+|.|.-.|.. |+++|...- .... ...-.+.+..+ |.+..+| .+|+.+|+.
T Consensus 19 ~~~~L~l~~dGnLvl~~~~-~~~iWss~~t~~~~--------~~~~~~~L~~~-GNlvl~d-~~~~~lW~S 78 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSN-GSVIWSSNNTSGRG--------NSGCYLVLQDD-GNLVLYD-SSGNVLWQS 78 (114)
T ss_dssp TTEEEEEETTSEEEEEETT-TEEEEE--S-TTSS---------SSEEEEEETT-SEEEEEE-TTSEEEEES
T ss_pred ccccceECCCCeEEEEcCC-CCEEEEecccCCcc--------ccCeEEEEeCC-CCEEEEe-ecceEEEee
Confidence 4567788889999999864 889999722 2110 01223444554 5788888 599999997
No 214
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.74 E-value=9.3e+02 Score=31.13 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=47.6
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcCC----------Ccc------eeeeeee----e--cCEEEEEE---cCCCeE
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGI----------NDV------VDGIDIA----L--GKYVITLS---SDGSTL 108 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~----------~~~------i~~l~~~----~--~~~~V~Vs---~~g~~v 108 (859)
..||++..+|.|.|+|+.+|.++.-..-+. +.- +++-+.. . .-..|.++ ..|+.+
T Consensus 583 ~~VyvgandGmLhaFd~~tG~E~fA~~P~avl~~l~~~t~~~y~~h~yyVDg~p~~~da~~ng~wrsvL~g~~G~GG~gl 662 (1036)
T COG3419 583 PVVYVGANDGMLHAFDANTGSERFAYVPSAVLSTLHSLTAPGYTAHQYYVDGSPTAADAYDNGQWRSVLVGGLGAGGRGL 662 (1036)
T ss_pred ceEEEecCCceeeeccCCccceeeecCcHHHHhhhhhhcCCCcccccceecCCceeehhhcCCcceEEEEeecCCCCcee
Confidence 349999999999999999999998876111 100 1111001 1 11344443 345679
Q ss_pred EEEeCCCCc-----EeEEEeccCc
Q 003001 109 RAWNLPDGQ-----MVWESFLRGS 127 (859)
Q Consensus 109 ~Ald~~tG~-----llW~~~~~~~ 127 (859)
+|+|..+=. ++|+......
T Consensus 663 yALDVTdP~~~~~~~Lw~~~~~d~ 686 (1036)
T COG3419 663 YALDVTDPDFSNSNLLWENNSNDD 686 (1036)
T ss_pred EEEEccCccccCCcchhcccCCCc
Confidence 999987654 9999877643
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=25.57 E-value=1.1e+03 Score=27.20 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=66.4
Q ss_pred ecCEEEEEEcC--CCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCe-EEE-Ee-CC--EEEEEEcCCCcE
Q 003001 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSL-ILV-SS-KG--CLHAVSSIDGEI 166 (859)
Q Consensus 94 ~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~-VvV-~~-~g--~l~ald~~tG~~ 166 (859)
.|+.+++++.. +..|+.||..+|+..--........ .. ....++. +++ .. +| .|+.+|..+|+.
T Consensus 214 DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~--~~-------~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 214 DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG--AP-------AFSPDGSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC--ce-------eECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence 56667776543 3479999999997543232222111 11 1122443 333 32 44 477778777764
Q ss_pred EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCC
Q 003001 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRS 246 (859)
Q Consensus 167 ~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~ 246 (859)
.=- ...... ......+.++..+++.+..++ ...++.++..+|..... . .... ...+...+..++.... .
T Consensus 285 ~~l-t~~~~~--~~~~~wSpDG~~i~f~s~~~g-~~~I~~~~~~~~~~~~l---~-~~~~-~~~~SpDG~~ia~~~~--~ 353 (429)
T PRK01742 285 SQL-TSGAGN--NTEPSWSPDGQSILFTSDRSG-SPQVYRMSASGGGASLV---G-GRGY-SAQISADGKTLVMING--D 353 (429)
T ss_pred Eee-ccCCCC--cCCEEECCCCCEEEEEECCCC-CceEEEEECCCCCeEEe---c-CCCC-CccCCCCCCEEEEEcC--C
Confidence 211 111110 111222334455555443222 24678888777654321 1 1111 1111113334444432 3
Q ss_pred eEEEEEeecCe
Q 003001 247 ILVTVSFKNRK 257 (859)
Q Consensus 247 ~l~v~~L~sg~ 257 (859)
.+...|+.+|+
T Consensus 354 ~i~~~Dl~~g~ 364 (429)
T PRK01742 354 NVVKQDLTSGS 364 (429)
T ss_pred CEEEEECCCCC
Confidence 46667777775
No 216
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=25.54 E-value=1.2e+03 Score=27.95 Aligned_cols=179 Identities=12% Similarity=0.058 Sum_probs=95.9
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++.++.++.+..+.--|..+|+-.=-...-.. . +. ...-...+.++ +.+.+|++||..+|..+=........+
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s-t--v~-~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V-- 334 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTS-S--VR-CLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV-- 334 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCc-e--EE-EEEccCceEeeccCCceEEEEeccCcceEEEeccccccE--
Confidence 55566666666666666666654332221111 1 11 11222344444 457899999999999886665332221
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecC-CeEEEEEecCCceeEEEEEE
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDES-DQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~-~~vyvv~~~g~~~~~v~ald 208 (859)
.. ... ++..+| . .||.+..-|..+|+.+=+........ ..+. ..+ ..+|-.+.++ .+-+.|
T Consensus 335 ----~~---v~~-~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V--~sl~--~~~~~~~~Sgs~D~----~IkvWd 398 (537)
T KOG0274|consen 335 ----NC---VQL-DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV--YSLI--VDSENRLLSGSLDT----TIKVWD 398 (537)
T ss_pred ----EE---EEe-cCCEEEEEecCceEEEEEhhhceeeeeecCCcceE--EEEE--ecCcceEEeeeecc----ceEeec
Confidence 11 111 344444 3 48889888888888877665533222 2221 233 5556555554 377778
Q ss_pred cCCCc-eeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGE-LLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~-~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+.++. .+-... .+..+. ..+...++.+++...+ +.+++-|.+++.
T Consensus 399 l~~~~~c~~tl~--~h~~~v-~~l~~~~~~Lvs~~aD-~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 399 LRTKRKCIHTLQ--GHTSLV-SSLLLRDNFLVSSSAD-GTIKLWDAEEGE 444 (537)
T ss_pred CCchhhhhhhhc--CCcccc-cccccccceeEecccc-ccEEEeecccCc
Confidence 87873 322221 111111 1222245566666544 677777877766
No 217
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=25.48 E-value=2.6e+02 Score=31.30 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=53.3
Q ss_pred cCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeee
Q 003001 103 SDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQ 180 (859)
Q Consensus 103 ~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 180 (859)
+.+++++.||..||+-+-......... .+ .+. .+.++|. +|.++...|+..|.-+=-.+..+ ++.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGI-----AC----lQY-r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE---eLv 403 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGI-----AC----LQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE---ELV 403 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccc-----ee----hhc-cCeEEEecCCCceEEEEeccccHHHHHHhchH---Hhh
Confidence 346799999999998876655443322 11 223 4666664 58899999999987653322221 122
Q ss_pred eEEEeecCCeEEEEEecCCceeEEEEEEcCCC
Q 003001 181 QVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (859)
Q Consensus 181 ~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG 212 (859)
+++. ..+..+.-.+++| ++-..|..+|
T Consensus 404 RciR-Fd~krIVSGaYDG----kikvWdl~aa 430 (499)
T KOG0281|consen 404 RCIR-FDNKRIVSGAYDG----KIKVWDLQAA 430 (499)
T ss_pred hhee-ecCceeeeccccc----eEEEEecccc
Confidence 3332 2444455444444 4665665554
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.32 E-value=8e+02 Score=28.17 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=11.2
Q ss_pred ceEEe-cCcEEEEEECCCCeEEEEEee
Q 003001 229 DVALV-SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 229 ~~~~v-~~~~lv~~d~~~~~l~v~~L~ 254 (859)
+++-| .++.++++-...|+..+.+..
T Consensus 285 Ssl~VS~dGkf~AlGT~dGsVai~~~~ 311 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALGTMDGSVAIYDAK 311 (398)
T ss_pred eeEEEcCCCcEEEEeccCCcEEEEEec
Confidence 34444 233333443334555555443
No 219
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.21 E-value=2.6e+02 Score=34.35 Aligned_cols=71 Identities=13% Similarity=0.248 Sum_probs=45.8
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
..+.+++.+-.+.--|..+|..+-... +...++..+.....+..+.-++.++.|.-||..+|+++=+....
T Consensus 548 ~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred cccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence 345566677889999999998865542 22234444433333333333555789999999999988665544
No 220
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=24.47 E-value=2.2e+02 Score=30.20 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=28.6
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCC---eEEEE--eCCEEEEEEcCCCcEEEEEec
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS---LILVS--SKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~---~VvV~--~~g~l~ald~~tG~~~W~~~~ 172 (859)
.|+ .+..+.|++.++ +| +|-.......- .+. ..+.+..+...+ ..++. .+|.|+++ ..+|.+ |+...
T Consensus 134 ~vf-a~~~GvLY~i~~-dg--~~~~~~~p~~~-~~~-W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V-~~~G~l-yr~~~ 205 (229)
T PF14517_consen 134 AVF-AGPNGVLYAITP-DG--RLYRRYRPDGG-SDR-WLSGSGLVGGGGWDSFHFIFFSPDGNLWAV-KSNGKL-YRGRP 205 (229)
T ss_dssp EEE-E-TTS-EEEEET-TE---EEEE---SST-T---HHHH-EEEESSSGGGEEEEEE-TTS-EEEE--ETTEE-EEES-
T ss_pred EEE-eCCCccEEEEcC-CC--ceEEeCCCCCC-CCc-cccccceeccCCcccceEEeeCCCCcEEEE-ecCCEE-eccCC
Confidence 444 444568999994 56 44444321111 111 111111222122 44443 48999999 466766 87765
Q ss_pred c
Q 003001 173 A 173 (859)
Q Consensus 173 ~ 173 (859)
+
T Consensus 206 p 206 (229)
T PF14517_consen 206 P 206 (229)
T ss_dssp -
T ss_pred c
Confidence 5
No 221
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=24.12 E-value=1e+03 Score=26.81 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=69.9
Q ss_pred ECCCCccceEEEcCCCcceeeeeeeec-CEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCe
Q 003001 69 DLRHGEIFWRHVLGINDVVDGIDIALG-KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSL 147 (859)
Q Consensus 69 d~~tG~ilWR~~l~~~~~i~~l~~~~~-~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~ 147 (859)
.++++..-|.........+. .+ +..+.++-..+.++.||..+|..+=++....+.. ...-+.. -+..+.
T Consensus 17 S~~~~~~~~~Lk~~~q~~~~-----~~~e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~-N~vrf~~----~ds~h~ 86 (376)
T KOG1188|consen 17 SVRVSNEDFCLKYDIQEQVK-----DGFETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATT-NGVRFIS----CDSPHG 86 (376)
T ss_pred ccccccccceeeccchhhhc-----cCcceeEEEEecCCeEEEEeccchhhhheecCCCCcc-cceEEec----CCCCCe
Confidence 34567777776664332111 11 2345555445689999999999998888776654 2222221 112234
Q ss_pred EEEE-eCCEEEEEEcCCCc----EEEEEeccCcceeeeeEEEeecCCeEEEEEe-cCCceeEEEEEEcCCCc
Q 003001 148 ILVS-SKGCLHAVSSIDGE----ILWTRDFAAESVEVQQVIQLDESDQIYVVGY-AGSSQFHAYQINAMNGE 213 (859)
Q Consensus 148 VvV~-~~g~l~ald~~tG~----~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~-~g~~~~~v~ald~~tG~ 213 (859)
|+.. +||.|...|..+-. ..|+...+. +..+.+.-..+.++..|. .-++...|+-+|...-+
T Consensus 87 v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~----~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 87 VISCSSDGTVRLWDIRSQAESARISWTQQSGT----PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred eEEeccCCeEEEEEeecchhhhheeccCCCCC----cceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence 4543 69999999887654 346554422 222332222334444332 11233446666765433
No 222
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.95 E-value=2e+02 Score=29.93 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=46.2
Q ss_pred HhhHHHHHHHHhhccCcc---ccccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEE
Q 003001 3 IRFIILTLLFLSSCTIPS---LSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRH 79 (859)
Q Consensus 3 ~~~~l~~l~~l~~~~~~~---~Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~ 79 (859)
.++++.+.++|++|+.++ .+.- --...|++...+.-+...|.. .+..-|++..++.-+.+ .|++
T Consensus 9 ~~l~~~As~LL~aC~~~~~~~~~~~---~~~~~Wq~hq~~l~~i~~yq~---~G~~~yis~~q~~s~rF-------~Wqq 75 (206)
T COG3017 9 FLLLALASLLLTACTLTASRPPNNS---PDSPQWQQHQQQLQEIQSYQA---RGRLAYISDQQRGSARF-------FWQQ 75 (206)
T ss_pred HHHHHHHHHHHHhccCcCCCCCCCC---CcchhHHHHHHHHHhhhhhee---cceEEEEcCCCcceEEE-------EEEE
Confidence 355666777999996432 1221 113567764432222222331 13446666666655444 5998
Q ss_pred EcCCCcceeeeeeeecCEEEEEEcCCCeEEEEe
Q 003001 80 VLGINDVVDGIDIALGKYVITLSSDGSTLRAWN 112 (859)
Q Consensus 80 ~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald 112 (859)
. +....+... .+.|.....++.+-+.++.=|
T Consensus 76 ~-p~~y~L~Ls-~pLg~t~l~L~~~~~ga~led 106 (206)
T COG3017 76 Q-PDRYRLLLS-NPLGSTLLELSQDRGGARLED 106 (206)
T ss_pred c-CCcEEEEEe-ccCCcceEEEEecCCceEEEe
Confidence 8 544333221 234555555544322244443
No 223
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=23.90 E-value=2.4e+02 Score=27.49 Aligned_cols=74 Identities=8% Similarity=0.256 Sum_probs=0.0
Q ss_pred eccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC---cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 49 QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN---DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 49 ~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~---~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
|....+.|+++|..+ |.|.|...-.-+....++.. ..+..+ ....+.+++++|+- .++.+|..--++.|.....
T Consensus 60 ~~~~~D~LliGt~t~-llaYDV~~N~d~Fyke~~DGvn~i~~g~~-~~~~~~l~ivGGnc-si~Gfd~~G~e~fWtVtgD 136 (136)
T PF14781_consen 60 PDDGRDCLLIGTQTS-LLAYDVENNSDLFYKEVPDGVNAIVIGKL-GDIPSPLVIVGGNC-SIQGFDYEGNEIFWTVTGD 136 (136)
T ss_pred CCCCcCEEEEeccce-EEEEEcccCchhhhhhCccceeEEEEEec-CCCCCcEEEECceE-EEEEeCCCCcEEEEEeccC
No 224
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=22.94 E-value=1e+03 Score=27.48 Aligned_cols=182 Identities=14% Similarity=0.147 Sum_probs=83.1
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCC--c-----ceeeee---eee-cCE----EEEEEcCCCeEEEEeCC-CC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--D-----VVDGID---IAL-GKY----VITLSSDGSTLRAWNLP-DG 116 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~--~-----~i~~l~---~~~-~~~----~V~Vs~~g~~v~Ald~~-tG 116 (859)
=+.|-++.++|.|.-+|.+--+++-+..+... . .+..+. ... +++ .++||++.|.+..|... .+
T Consensus 97 iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~ 176 (395)
T PF08596_consen 97 IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSS 176 (395)
T ss_dssp TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-G
T ss_pred CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCC
Confidence 45588888999999999999999999887661 0 011110 112 222 34566666788888554 34
Q ss_pred cEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEe
Q 003001 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGY 196 (859)
Q Consensus 117 ~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~ 196 (859)
.-.|+........ . . ++. =..+..+|.++|+..+.....-..+... + ...+.+.+++.
T Consensus 177 ~g~f~v~~~~~~~-----~-------~-~~~-----i~~I~~i~~~~G~~a~At~~~~~~l~~g-~---~i~g~vVvvSe 234 (395)
T PF08596_consen 177 NGRFSVQFAGATT-----N-------H-DSP-----ILSIIPINADTGESALATISAMQGLSKG-I---SIPGYVVVVSE 234 (395)
T ss_dssp GG-EEEEEEEEE--------------S-S---------EEEEEETTT--B-B-BHHHHHGGGGT--------EEEEEE-S
T ss_pred CCceEEEEeeccc-----c-------C-CCc-----eEEEEEEECCCCCcccCchhHhhccccC-C---CcCcEEEEEcc
Confidence 4457766543220 0 0 111 1235667888888766542211111000 0 11223333322
Q ss_pred cCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe------cCcEEEEEECCCCeEEEEEeecCeeeEEEEee
Q 003001 197 AGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV------SSDTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (859)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v------~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~l 265 (859)
.. +-.+.+.+++..-+.. ..+ -....+.++ ++..|+|+.. +|.+.+..|-.=+ ++.++.+
T Consensus 235 ---~~--irv~~~~~~k~~~K~~-~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~-~G~i~i~SLP~Lk-ei~~~~l 300 (395)
T PF08596_consen 235 ---SD--IRVFKPPKSKGAHKSF-DDP-FLCSSASVVPTISRNGGYCLVCLFN-NGSIRIYSLPSLK-EIKSVSL 300 (395)
T ss_dssp ---SE--EEEE-TT---EEEEE--SS--EEEEEEEEEEEE-EEEEEEEEEEET-TSEEEEEETTT---EEEEEE-
T ss_pred ---cc--eEEEeCCCCcccceee-ccc-cccceEEEEeecccCCceEEEEEEC-CCcEEEEECCCch-HhhcccC
Confidence 22 4445666665543221 111 111122222 3457888874 5888888876633 2444544
No 225
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=22.80 E-value=74 Score=21.69 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=11.0
Q ss_pred HhhHHHHHHHHhhccC
Q 003001 3 IRFIILTLLFLSSCTI 18 (859)
Q Consensus 3 ~~~~l~~l~~l~~~~~ 18 (859)
|=+.+++++.|++|++
T Consensus 10 il~~l~a~~~LagCss 25 (25)
T PF08139_consen 10 ILFPLLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHHHHHhhccC
Confidence 3356677778999963
No 226
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=22.20 E-value=9.9e+02 Score=29.94 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=48.4
Q ss_pred EEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCc
Q 003001 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAE 175 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~ 175 (859)
++.++.-.|++..||-..|..+=+.+-+.... ++...++ ..+...+++. . +...+.-.+..+|+..|+++....
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~-qdl~W~~---~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSV-QDLCWVP---ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcch-hheeeee---ccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 44444446789999999886554443333333 4555555 2332334443 4 577899999999999999987654
Q ss_pred ce
Q 003001 176 SV 177 (859)
Q Consensus 176 ~~ 177 (859)
.+
T Consensus 157 iL 158 (1062)
T KOG1912|consen 157 IL 158 (1062)
T ss_pred ce
Confidence 43
No 227
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=22.19 E-value=3.4e+02 Score=31.90 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=57.3
Q ss_pred ccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc
Q 003001 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 50 ~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~ 127 (859)
+.++.+++++.-+|.|.+-|.++|..+=++++... |-.+.---.++++.|+-..+.|..+.. +|....+..+...
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ--IfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheS 634 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ--IFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHES 634 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhhhhhhhhh--heecccCCCccceeeecccCcEEEEec-CCccceeeccccc
Confidence 34577799999999999999999999999888766 333311236789998887778888875 6888877776543
No 228
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=21.68 E-value=1.3e+03 Score=26.66 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred cCEEEEEEcCC--CeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEec
Q 003001 95 GKYVITLSSDG--STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 95 ~~~~V~Vs~~g--~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~ 172 (859)
|+.+++.|..+ .+++.+|.++|+..==+....... .+..+.+ .....+++..+..|.++|+++++..=-+..
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~-~g~~~s~-----~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNT-FGGFLSP-----DDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-T-TT-EE-T-----TSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCc-cceEEec-----CCCeEEEEECCCeEEEEECCcCcEEEEEEC
Q ss_pred cCcceeeeeEEEeecCCeEEEEEecCCc------------------eeEEEEEEcCCCce
Q 003001 173 AAESVEVQQVIQLDESDQIYVVGYAGSS------------------QFHAYQINAMNGEL 214 (859)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~vyvv~~~g~~------------------~~~v~ald~~tG~~ 214 (859)
+.........+.......+..+-..... +-++..+|+.||+.
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Done!