Query 003001
Match_columns 859
No_of_seqs 308 out of 1102
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7m_A Lipoprotein YFGL, BAMB; 99.7 1.1E-15 3.7E-20 169.7 32.8 216 26-258 25-261 (376)
2 3q7m_A Lipoprotein YFGL, BAMB; 99.7 1.3E-15 4.5E-20 168.9 24.3 218 23-257 67-298 (376)
3 1flg_A Protein (quinoprotein e 99.6 1.2E-13 3.9E-18 163.7 26.5 228 27-265 42-364 (582)
4 2ad6_A Methanol dehydrogenase 99.6 2.3E-13 7.8E-18 160.9 25.5 229 29-265 40-344 (571)
5 1kb0_A Quinohemoprotein alcoho 99.6 9.1E-14 3.1E-18 167.6 21.9 224 28-258 54-349 (677)
6 1w6s_A Methanol dehydrogenase 99.6 1.2E-13 3.9E-18 163.9 22.0 222 28-258 39-345 (599)
7 1yiq_A Quinohemoprotein alcoho 99.5 1.9E-13 6.4E-18 165.1 23.2 223 28-257 47-340 (689)
8 1kv9_A Type II quinohemoprotei 99.5 2.8E-13 9.5E-18 163.1 23.1 222 28-257 43-335 (668)
9 2hz6_A Endoplasmic reticulum t 99.5 9.6E-14 3.3E-18 155.0 10.9 186 48-257 4-194 (369)
10 1kb0_A Quinohemoprotein alcoho 99.5 1.1E-11 3.7E-16 149.5 28.3 191 24-219 92-354 (677)
11 1flg_A Protein (quinoprotein e 99.4 1.9E-11 6.6E-16 144.7 28.4 194 24-221 83-365 (582)
12 3no2_A Uncharacterized protein 99.4 1.2E-11 4.1E-16 132.4 22.4 182 21-219 17-203 (276)
13 1w6s_A Methanol dehydrogenase 99.4 7E-12 2.4E-16 148.6 21.6 192 25-220 79-351 (599)
14 1yiq_A Quinohemoprotein alcoho 99.4 4.6E-11 1.6E-15 144.2 28.6 100 24-124 85-201 (689)
15 1kv9_A Type II quinohemoprotei 99.4 5E-11 1.7E-15 143.5 28.4 190 24-218 81-340 (668)
16 2ad6_A Methanol dehydrogenase 99.4 1.2E-11 4.2E-16 146.1 22.6 190 27-220 82-344 (571)
17 3no2_A Uncharacterized protein 99.4 8E-11 2.7E-15 126.0 24.1 191 53-264 5-203 (276)
18 2be1_A Serine/threonine-protei 99.4 6.2E-12 2.1E-16 138.3 15.7 162 53-222 10-193 (339)
19 2hz6_A Endoplasmic reticulum t 99.3 6E-13 2E-17 148.5 4.4 174 23-222 23-203 (369)
20 3vgz_A Uncharacterized protein 99.0 3.3E-07 1.1E-11 98.7 33.5 223 31-265 33-271 (353)
21 2be1_A Serine/threonine-protei 99.0 3.9E-10 1.4E-14 123.9 10.4 192 25-223 26-244 (339)
22 3hxj_A Pyrrolo-quinoline quino 99.0 1.4E-08 4.9E-13 108.9 19.4 180 52-257 106-285 (330)
23 3hxj_A Pyrrolo-quinoline quino 98.9 6.8E-08 2.3E-12 103.6 21.6 170 23-220 121-292 (330)
24 3vgz_A Uncharacterized protein 98.8 3.3E-06 1.1E-10 90.8 30.6 192 52-257 99-305 (353)
25 3dsm_A Uncharacterized protein 98.6 7.4E-06 2.5E-10 89.1 25.6 172 22-215 67-257 (328)
26 3dsm_A Uncharacterized protein 98.4 2.4E-05 8.3E-10 84.9 23.5 190 52-257 52-255 (328)
27 1l0q_A Surface layer protein; 98.4 0.00037 1.3E-08 76.1 32.0 213 22-257 15-235 (391)
28 1l0q_A Surface layer protein; 98.4 0.00071 2.4E-08 73.8 34.2 183 56-257 5-191 (391)
29 1nir_A Nitrite reductase; hemo 98.3 0.0013 4.6E-08 76.7 37.4 190 53-257 148-357 (543)
30 3bws_A Protein LP49; two-domai 98.3 0.0011 3.8E-08 73.3 33.9 181 64-257 102-294 (433)
31 2ovr_B FBW7, F-BOX/WD repeat p 98.2 0.0024 8.3E-08 71.4 35.3 182 52-257 128-310 (445)
32 1pby_B Quinohemoprotein amine 98.2 0.00036 1.2E-08 73.8 26.3 138 22-172 14-172 (337)
33 2iwa_A Glutamine cyclotransfer 98.2 0.00034 1.2E-08 74.2 25.6 188 53-256 31-238 (266)
34 1pby_B Quinohemoprotein amine 98.2 0.0014 4.7E-08 69.3 29.7 154 54-220 2-172 (337)
35 3bws_A Protein LP49; two-domai 98.1 0.0047 1.6E-07 68.2 33.3 191 53-257 133-336 (433)
36 1r5m_A SIR4-interacting protei 98.1 0.0038 1.3E-07 68.0 31.3 189 52-257 56-280 (425)
37 3ow8_A WD repeat-containing pr 98.0 0.0099 3.4E-07 63.8 33.3 188 53-257 48-239 (321)
38 1nir_A Nitrite reductase; hemo 98.0 0.0053 1.8E-07 71.6 33.1 199 50-255 187-402 (543)
39 2ovr_B FBW7, F-BOX/WD repeat p 98.0 0.0075 2.6E-07 67.3 31.7 183 52-257 208-393 (445)
40 3v7d_B Cell division control p 97.9 0.022 7.5E-07 63.6 35.5 190 52-257 131-343 (464)
41 3nok_A Glutaminyl cyclase; bet 97.9 0.00043 1.5E-08 73.1 18.9 153 52-221 63-220 (268)
42 1gxr_A ESG1, transducin-like e 97.9 0.0061 2.1E-07 64.1 28.4 187 52-257 108-298 (337)
43 3nol_A Glutamine cyclotransfer 97.9 0.0014 4.8E-08 69.0 22.8 153 53-221 52-211 (262)
44 1qks_A Cytochrome CD1 nitrite 97.9 0.014 4.6E-07 68.6 33.0 202 53-265 166-382 (567)
45 4ery_A WD repeat-containing pr 97.9 0.03 1E-06 58.8 32.7 189 52-257 34-225 (312)
46 3vl1_A 26S proteasome regulato 97.8 0.019 6.4E-07 63.0 32.1 188 52-257 67-280 (420)
47 3mbr_X Glutamine cyclotransfer 97.8 0.0049 1.7E-07 64.2 25.4 156 52-221 29-189 (243)
48 1jmx_B Amine dehydrogenase; ox 97.8 0.0028 9.6E-08 67.4 23.5 139 22-173 24-185 (349)
49 3u4y_A Uncharacterized protein 97.8 0.023 8E-07 60.0 30.1 217 22-257 23-254 (331)
50 3zwl_B Eukaryotic translation 97.7 0.066 2.2E-06 56.7 33.6 189 52-257 43-251 (369)
51 4aez_A CDC20, WD repeat-contai 97.7 0.043 1.5E-06 60.3 32.9 188 53-257 103-295 (401)
52 3ow8_A WD repeat-containing pr 97.7 0.024 8.1E-07 60.7 29.6 188 52-257 91-281 (321)
53 3u4y_A Uncharacterized protein 97.7 0.073 2.5E-06 56.1 34.6 191 53-257 9-209 (331)
54 2ynn_A Coatomer subunit beta'; 97.7 0.031 1E-06 59.1 29.6 191 52-257 24-219 (304)
55 1qks_A Cytochrome CD1 nitrite 97.7 0.12 4.1E-06 60.5 37.2 224 22-255 180-421 (567)
56 1p22_A F-BOX/WD-repeat protein 97.6 0.017 6E-07 64.2 28.1 184 52-257 142-327 (435)
57 1gxr_A ESG1, transducin-like e 97.6 0.0086 2.9E-07 63.0 24.2 181 52-253 152-335 (337)
58 2aq5_A Coronin-1A; WD40 repeat 97.6 0.0062 2.1E-07 67.0 24.0 196 52-257 93-301 (402)
59 3v7d_B Cell division control p 97.6 0.047 1.6E-06 60.9 31.5 184 52-257 216-423 (464)
60 3mkq_A Coatomer beta'-subunit; 97.6 0.052 1.8E-06 65.2 33.9 191 52-257 24-219 (814)
61 3c75_H MADH, methylamine dehyd 97.6 0.13 4.5E-06 58.0 33.7 194 49-257 80-297 (426)
62 4gqb_B Methylosome protein 50; 97.6 0.0029 1E-07 69.0 19.6 192 53-257 93-291 (344)
63 1q7f_A NHL, brain tumor CG1071 97.6 0.031 1E-06 58.1 26.7 151 53-218 40-200 (286)
64 1sq9_A Antiviral protein SKI8; 97.5 0.0073 2.5E-07 65.6 22.6 154 51-219 135-330 (397)
65 4ery_A WD repeat-containing pr 97.5 0.019 6.5E-07 60.4 25.2 191 52-257 76-270 (312)
66 1r5m_A SIR4-interacting protei 97.5 0.021 7.3E-07 61.9 26.2 193 52-257 119-321 (425)
67 3sjl_D Methylamine dehydrogena 97.5 0.16 5.5E-06 56.4 33.2 190 49-257 40-258 (386)
68 3zwl_B Eukaryotic translation 97.5 0.047 1.6E-06 57.9 28.1 156 52-219 85-257 (369)
69 1q7f_A NHL, brain tumor CG1071 97.5 0.019 6.5E-07 59.7 24.3 154 52-219 87-245 (286)
70 3hfq_A Uncharacterized protein 97.5 0.16 5.5E-06 54.1 33.3 191 55-255 4-218 (347)
71 1pgu_A Actin interacting prote 97.4 0.18 6.1E-06 57.9 33.8 115 53-172 219-337 (615)
72 3fvz_A Peptidyl-glycine alpha- 97.4 0.12 4.2E-06 55.2 30.3 151 64-219 70-235 (329)
73 3sfz_A APAF-1, apoptotic pepti 97.4 0.12 4E-06 65.6 34.9 156 51-219 625-782 (1249)
74 3vl1_A 26S proteasome regulato 97.4 0.0052 1.8E-07 67.4 19.6 193 51-257 107-324 (420)
75 1jmx_B Amine dehydrogenase; ox 97.4 0.0051 1.7E-07 65.3 18.8 151 53-220 10-184 (349)
76 4aez_A CDC20, WD repeat-contai 97.4 0.027 9.4E-07 61.9 24.8 191 53-257 186-382 (401)
77 1vyh_C Platelet-activating fac 97.4 0.22 7.4E-06 55.1 32.1 151 52-217 119-271 (410)
78 4a11_B DNA excision repair pro 97.4 0.062 2.1E-06 57.9 26.9 194 52-257 55-278 (408)
79 1erj_A Transcriptional repress 97.3 0.26 9E-06 53.9 32.0 190 52-257 75-289 (393)
80 3c75_H MADH, methylamine dehyd 97.2 0.063 2.2E-06 60.6 25.7 227 23-257 103-404 (426)
81 2mad_H Methylamine dehydrogena 97.2 0.27 9.3E-06 54.1 30.5 147 50-213 74-245 (373)
82 3hx6_A Type 4 fimbrial biogene 97.2 0.0095 3.3E-07 68.8 18.8 155 53-215 85-288 (570)
83 3sfz_A APAF-1, apoptotic pepti 97.2 0.16 5.5E-06 64.4 32.3 155 95-265 626-783 (1249)
84 1got_B GT-beta; complex (GTP-b 97.2 0.14 4.9E-06 54.7 27.5 188 52-257 108-303 (340)
85 1p22_A F-BOX/WD-repeat protein 97.2 0.078 2.7E-06 58.9 26.0 185 52-257 182-367 (435)
86 2iwa_A Glutamine cyclotransfer 97.2 0.026 9E-07 59.6 20.4 158 89-266 25-191 (266)
87 1sq9_A Antiviral protein SKI8; 97.1 0.08 2.7E-06 57.2 25.0 196 54-264 82-330 (397)
88 3i2n_A WD repeat-containing pr 97.1 0.15 5.2E-06 53.7 26.8 196 53-257 30-245 (357)
89 1got_B GT-beta; complex (GTP-b 97.1 0.39 1.3E-05 51.3 34.4 190 51-257 65-259 (340)
90 3nol_A Glutamine cyclotransfer 97.1 0.029 9.8E-07 59.0 19.8 113 51-173 94-211 (262)
91 3odt_A Protein DOA1; ubiquitin 97.1 0.024 8.1E-07 58.9 19.4 150 52-219 154-304 (313)
92 3k26_A Polycomb protein EED; W 97.1 0.39 1.4E-05 50.6 30.4 153 53-216 34-197 (366)
93 3sjl_D Methylamine dehydrogena 97.1 0.08 2.7E-06 58.9 24.3 151 50-214 86-259 (386)
94 3odt_A Protein DOA1; ubiquitin 97.1 0.074 2.5E-06 55.0 23.0 183 52-257 113-298 (313)
95 2qc5_A Streptogramin B lactona 97.0 0.39 1.3E-05 49.3 28.2 183 53-257 30-219 (300)
96 4g56_B MGC81050 protein; prote 97.0 0.0042 1.4E-07 67.8 13.0 193 53-257 105-303 (357)
97 3i2n_A WD repeat-containing pr 97.0 0.13 4.6E-06 54.2 24.4 196 53-257 80-293 (357)
98 3hfq_A Uncharacterized protein 97.0 0.52 1.8E-05 50.0 30.6 199 53-254 50-270 (347)
99 3mkq_A Coatomer beta'-subunit; 97.0 0.58 2E-05 55.9 32.5 147 95-257 24-174 (814)
100 2z2n_A Virginiamycin B lyase; 96.9 0.42 1.4E-05 49.0 27.1 183 53-257 25-214 (299)
101 2pbi_B Guanine nucleotide-bind 96.9 0.32 1.1E-05 52.5 27.2 191 52-257 75-317 (354)
102 3nok_A Glutaminyl cyclase; bet 96.9 0.052 1.8E-06 57.1 19.6 153 96-268 64-222 (268)
103 2mad_H Methylamine dehydrogena 96.9 0.76 2.6E-05 50.5 36.4 190 51-257 30-245 (373)
104 3mbr_X Glutamine cyclotransfer 96.9 0.12 4.2E-06 53.6 21.8 155 96-269 30-192 (243)
105 2pbi_B Guanine nucleotide-bind 96.8 0.096 3.3E-06 56.7 22.0 154 52-218 165-322 (354)
106 3jrp_A Fusion protein of prote 96.8 0.49 1.7E-05 50.2 27.1 194 52-257 22-242 (379)
107 3mmy_A MRNA export factor; mRN 96.8 0.079 2.7E-06 56.1 20.7 186 52-257 97-306 (368)
108 1ri6_A Putative isomerase YBHE 96.8 0.65 2.2E-05 48.4 34.1 188 53-255 4-209 (343)
109 4g56_B MGC81050 protein; prote 96.7 0.037 1.3E-06 60.2 17.8 196 51-257 52-260 (357)
110 2aq5_A Coronin-1A; WD40 repeat 96.7 0.19 6.4E-06 55.0 23.7 185 59-257 53-256 (402)
111 2z2n_A Virginiamycin B lyase; 96.7 0.22 7.4E-06 51.3 22.9 183 53-257 109-297 (299)
112 3gre_A Serine/threonine-protei 96.7 0.089 3.1E-06 58.0 21.1 158 52-218 181-366 (437)
113 2ynn_A Coatomer subunit beta'; 96.7 0.76 2.6E-05 48.1 30.5 144 97-257 26-174 (304)
114 4aow_A Guanine nucleotide-bind 96.7 0.14 4.9E-06 53.7 21.5 188 52-257 139-339 (340)
115 3lrv_A PRE-mRNA-splicing facto 96.7 0.86 2.9E-05 48.5 28.1 190 53-256 94-293 (343)
116 3fvz_A Peptidyl-glycine alpha- 96.7 0.75 2.6E-05 49.0 27.4 162 53-218 101-284 (329)
117 2qc5_A Streptogramin B lactona 96.6 0.28 9.6E-06 50.4 23.0 183 53-257 72-261 (300)
118 4a11_B DNA excision repair pro 96.6 0.11 3.6E-06 56.1 20.5 196 52-257 155-367 (408)
119 1k8k_C P40, ARP2/3 complex 41 96.6 0.53 1.8E-05 49.9 25.8 192 52-257 19-235 (372)
120 1k8k_C P40, ARP2/3 complex 41 96.6 0.27 9.2E-06 52.3 23.1 190 52-255 63-274 (372)
121 3mmy_A MRNA export factor; mRN 96.6 0.17 5.8E-06 53.4 21.2 185 54-256 55-248 (368)
122 3k26_A Polycomb protein EED; W 96.5 0.15 5.2E-06 53.8 20.5 106 53-167 85-196 (366)
123 2oiz_A Aromatic amine dehydrog 96.5 0.35 1.2E-05 52.7 23.7 72 50-121 58-146 (361)
124 4h5i_A Guanine nucleotide-exch 96.5 0.66 2.3E-05 50.3 25.7 153 95-257 145-302 (365)
125 3gre_A Serine/threonine-protei 96.5 1.4 4.8E-05 48.2 31.8 195 52-257 75-294 (437)
126 2vdu_B TRNA (guanine-N(7)-)-me 96.4 0.57 1.9E-05 52.1 25.3 154 98-265 117-280 (450)
127 1vyh_C Platelet-activating fac 96.4 0.46 1.6E-05 52.4 24.3 189 52-257 161-371 (410)
128 2oiz_A Aromatic amine dehydrog 96.4 1.5 5E-05 47.7 29.4 114 51-169 13-146 (361)
129 3lrv_A PRE-mRNA-splicing facto 96.4 0.18 6.1E-06 53.9 20.1 156 52-218 138-299 (343)
130 1erj_A Transcriptional repress 96.3 0.28 9.7E-06 53.6 21.7 150 52-214 134-290 (393)
131 4aow_A Guanine nucleotide-bind 96.3 0.14 4.9E-06 53.6 18.6 146 54-213 186-339 (340)
132 4gqb_B Methylosome protein 50; 96.3 0.12 4.2E-06 55.9 18.4 153 51-215 137-293 (344)
133 1yfq_A Cell cycle arrest prote 96.3 0.1 3.4E-06 55.0 17.0 188 52-257 67-284 (342)
134 2vdu_B TRNA (guanine-N(7)-)-me 96.2 0.34 1.2E-05 53.9 21.9 155 52-220 113-280 (450)
135 3hx6_A Type 4 fimbrial biogene 96.2 0.12 4.1E-06 59.8 17.7 154 96-257 85-286 (570)
136 3ei3_B DNA damage-binding prot 96.1 0.61 2.1E-05 50.2 22.8 188 54-257 87-284 (383)
137 1rwi_B Serine/threonine-protei 96.1 0.25 8.6E-06 50.2 18.7 183 53-255 34-222 (270)
138 1pgu_A Actin interacting prote 96.1 0.24 8.3E-06 56.7 20.4 195 52-264 77-291 (615)
139 4gga_A P55CDC, cell division c 96.1 2.2 7.7E-05 46.7 32.7 145 56-216 118-266 (420)
140 4ggc_A P55CDC, cell division c 96.1 1.6 5.4E-05 44.9 31.1 145 96-257 36-183 (318)
141 3jrp_A Fusion protein of prote 96.1 0.72 2.5E-05 48.8 22.7 199 53-257 69-289 (379)
142 4asc_A Kelch repeat and BTB do 96.0 0.94 3.2E-05 47.8 23.4 173 52-240 44-249 (315)
143 3frx_A Guanine nucleotide-bind 96.0 1.9 6.6E-05 45.4 27.0 192 51-257 75-269 (319)
144 2hqs_A Protein TOLB; TOLB, PAL 96.0 0.51 1.7E-05 52.3 21.7 188 51-257 188-389 (415)
145 2pm9_A Protein WEB1, protein t 96.0 0.11 3.8E-06 56.4 15.9 199 52-257 78-296 (416)
146 1ri6_A Putative isomerase YBHE 95.9 2 6.7E-05 44.7 31.7 191 51-254 47-261 (343)
147 3iz6_a 40S ribosomal protein R 95.8 0.58 2E-05 50.8 21.2 190 53-256 170-376 (380)
148 3vu4_A KMHSV2; beta-propeller 95.8 0.67 2.3E-05 49.9 21.3 73 52-128 30-103 (355)
149 1pjx_A Dfpase, DIISOPROPYLFLUO 95.8 0.44 1.5E-05 49.5 19.3 148 53-214 28-211 (314)
150 1rwi_B Serine/threonine-protei 95.7 0.32 1.1E-05 49.4 17.5 145 53-213 77-224 (270)
151 3e5z_A Putative gluconolactona 95.6 2.4 8.3E-05 43.7 24.1 146 53-214 39-206 (296)
152 3g4e_A Regucalcin; six bladed 95.5 2.1 7.1E-05 44.7 23.2 148 53-216 24-187 (297)
153 1jof_A Carboxy-CIS,CIS-muconat 95.4 1.8 6.1E-05 46.6 23.0 156 51-215 49-230 (365)
154 4h5i_A Guanine nucleotide-exch 95.4 1.5 5.1E-05 47.5 22.3 71 51-124 143-215 (365)
155 4gga_A P55CDC, cell division c 95.4 4.1 0.00014 44.5 26.2 190 52-257 158-355 (420)
156 4e54_B DNA damage-binding prot 95.4 0.99 3.4E-05 49.9 21.1 192 53-257 132-329 (435)
157 2p4o_A Hypothetical protein; p 95.3 2.4 8.1E-05 44.6 23.0 146 53-214 42-202 (306)
158 2zux_A YESW protein; beta-prop 95.3 0.47 1.6E-05 54.7 17.8 145 65-219 231-408 (591)
159 3ei3_B DNA damage-binding prot 95.3 3.9 0.00013 43.7 27.7 150 53-219 131-290 (383)
160 2fp8_A Strictosidine synthase; 95.2 1.6 5.4E-05 46.2 21.4 184 53-255 91-313 (322)
161 3dw8_B Serine/threonine-protei 95.2 1.1 3.9E-05 48.8 20.8 68 52-119 39-130 (447)
162 2vpj_A Kelch-like protein 12; 95.1 3.2 0.00011 43.1 23.0 191 53-257 14-233 (301)
163 1nr0_A Actin interacting prote 95.1 6.8 0.00023 45.4 37.0 110 52-167 201-317 (611)
164 1pjx_A Dfpase, DIISOPROPYLFLUO 95.0 3.6 0.00012 42.4 23.2 187 54-255 83-299 (314)
165 3e5z_A Putative gluconolactona 95.0 0.89 3E-05 47.2 18.2 138 62-217 152-292 (296)
166 2pm9_A Protein WEB1, protein t 95.0 0.44 1.5E-05 51.5 16.3 192 53-257 126-339 (416)
167 3f3f_A Nucleoporin SEH1; struc 94.9 1.8 6.1E-05 44.6 20.2 72 52-123 70-151 (351)
168 3f3f_A Nucleoporin SEH1; struc 94.8 4.1 0.00014 41.8 27.1 110 52-167 22-147 (351)
169 2ecf_A Dipeptidyl peptidase IV 94.8 8.5 0.00029 45.3 28.5 106 51-167 46-185 (741)
170 3jro_A Fusion protein of prote 94.8 0.89 3.1E-05 54.6 19.9 193 52-257 20-240 (753)
171 3hrp_A Uncharacterized protein 94.8 6.2 0.00021 43.6 26.2 203 52-265 181-408 (409)
172 2oaj_A Protein SNI1; WD40 repe 94.8 1.7 5.9E-05 53.5 22.8 188 52-257 28-244 (902)
173 3frx_A Guanine nucleotide-bind 94.8 3.7 0.00013 43.1 22.6 186 52-256 118-318 (319)
174 4asc_A Kelch repeat and BTB do 94.7 2.3 8E-05 44.7 21.0 185 55-257 6-223 (315)
175 1yfq_A Cell cycle arrest prote 94.6 0.74 2.5E-05 48.2 16.5 182 52-256 22-226 (342)
176 3iz6_a 40S ribosomal protein R 94.6 1.3 4.5E-05 48.0 19.0 119 52-171 217-337 (380)
177 2woz_A Kelch repeat and BTB do 94.6 5.4 0.00018 41.9 25.4 195 51-263 54-293 (318)
178 3dm0_A Maltose-binding peripla 94.4 2 6.9E-05 50.6 21.3 189 53-257 395-594 (694)
179 3pe7_A Oligogalacturonate lyas 94.3 1.1 3.7E-05 48.1 17.3 152 51-214 45-228 (388)
180 2xn4_A Kelch-like protein 2; s 94.3 5.5 0.00019 41.4 22.4 189 53-257 15-231 (302)
181 3ii7_A Kelch-like protein 7; p 94.3 5.5 0.00019 41.5 22.4 189 53-257 11-227 (306)
182 3hrp_A Uncharacterized protein 94.2 8.2 0.00028 42.6 25.1 148 52-210 140-297 (409)
183 3dm0_A Maltose-binding peripla 94.2 2.4 8.1E-05 50.0 21.6 192 51-257 440-634 (694)
184 1zgk_A Kelch-like ECH-associat 94.1 5 0.00017 42.0 21.8 196 46-257 17-242 (308)
185 2xzm_R RACK1; ribosome, transl 94.1 4.6 0.00016 42.7 21.8 103 52-162 38-148 (343)
186 2p9w_A MAL S 1 allergenic prot 94.1 4.3 0.00015 43.9 21.1 153 96-255 24-215 (334)
187 1mda_H Methylamine dehydrogena 94.1 1.4 4.6E-05 48.6 17.6 66 50-115 73-158 (368)
188 2p9w_A MAL S 1 allergenic prot 94.1 2.1 7.2E-05 46.3 18.6 153 53-211 24-215 (334)
189 2hqs_A Protein TOLB; TOLB, PAL 94.1 5.5 0.00019 43.8 22.9 187 53-257 143-346 (415)
190 2dg1_A DRP35, lactonase; beta 94.0 5.7 0.00019 41.5 22.0 151 53-216 55-219 (333)
191 2vpj_A Kelch-like protein 12; 94.0 6.6 0.00022 40.7 25.0 192 52-257 61-280 (301)
192 2xyi_A Probable histone-bindin 93.9 3.1 0.00011 45.8 20.5 185 54-255 142-353 (430)
193 3fm0_A Protein CIAO1; WDR39,SG 93.9 3.5 0.00012 43.8 20.3 108 52-165 27-138 (345)
194 3scy_A Hypothetical bacterial 93.8 7.9 0.00027 40.9 33.0 197 51-254 59-290 (361)
195 3dwl_C Actin-related protein 2 93.7 0.088 3E-06 56.6 7.1 106 52-166 22-134 (377)
196 3qqz_A Putative uncharacterize 93.6 7.9 0.00027 40.2 21.9 70 52-123 37-108 (255)
197 2ghs_A AGR_C_1268P; regucalcin 93.4 9.2 0.00031 40.4 22.7 143 53-212 60-213 (326)
198 2zuy_A YESX protein; beta-prop 93.4 2 7E-05 49.7 17.6 146 64-219 234-412 (620)
199 4a2l_A BT_4663, two-component 93.4 8.1 0.00028 46.4 24.4 151 53-214 367-529 (795)
200 3pe7_A Oligogalacturonate lyas 93.3 4.6 0.00016 43.0 20.1 155 51-215 90-277 (388)
201 1nr0_A Actin interacting prote 93.2 15 0.00052 42.4 27.9 144 99-257 163-315 (611)
202 2w18_A PALB2, fancn, partner a 93.0 9.4 0.00032 41.6 21.6 157 53-219 144-322 (356)
203 3ii7_A Kelch-like protein 7; p 93.0 9.7 0.00033 39.5 25.5 190 52-257 54-274 (306)
204 2ymu_A WD-40 repeat protein; u 92.7 16 0.00054 41.2 39.2 107 52-170 191-299 (577)
205 4a2l_A BT_4663, two-component 92.7 2.8 9.5E-05 50.5 18.9 152 53-215 183-343 (795)
206 3vu4_A KMHSV2; beta-propeller 92.7 12 0.00041 39.8 23.8 143 53-214 110-274 (355)
207 3v9f_A Two-component system se 92.6 2.1 7.3E-05 51.4 17.7 148 53-214 417-571 (781)
208 1fwx_A Nitrous oxide reductase 92.5 5.6 0.00019 46.4 20.1 144 51-211 145-361 (595)
209 4ggc_A P55CDC, cell division c 92.3 11 0.00037 38.4 31.8 147 56-218 38-188 (318)
210 3jro_A Fusion protein of prote 92.1 2.6 9E-05 50.5 17.6 198 53-256 67-286 (753)
211 2qe8_A Uncharacterized protein 92.1 6.5 0.00022 41.9 19.1 109 53-170 27-160 (343)
212 1zgk_A Kelch-like ECH-associat 92.0 13 0.00045 38.7 22.7 190 52-257 69-289 (308)
213 3v9f_A Two-component system se 91.8 26 0.0009 41.7 30.0 152 53-216 323-483 (781)
214 3g4e_A Regucalcin; six bladed 91.7 14 0.00046 38.3 26.5 147 95-257 24-184 (297)
215 2ecf_A Dipeptidyl peptidase IV 91.7 15 0.00052 43.1 23.4 162 51-218 118-328 (741)
216 3dr2_A Exported gluconolactona 91.6 2.4 8.1E-05 44.4 14.6 131 62-209 168-304 (305)
217 4hw6_A Hypothetical protein, I 91.6 8.9 0.00031 42.8 20.1 147 53-214 152-309 (433)
218 2xdw_A Prolyl endopeptidase; a 91.6 6.3 0.00022 46.6 19.9 156 51-218 134-328 (710)
219 2xyi_A Probable histone-bindin 91.5 9.2 0.00031 41.9 20.0 145 55-211 196-353 (430)
220 2dg1_A DRP35, lactonase; beta 91.5 15 0.0005 38.2 22.8 150 53-219 97-270 (333)
221 3scy_A Hypothetical bacterial 91.5 16 0.00054 38.5 38.5 194 55-257 15-244 (361)
222 2oaj_A Protein SNI1; WD40 repe 91.4 8.3 0.00028 47.4 21.3 155 53-217 69-248 (902)
223 4e54_B DNA damage-binding prot 91.3 2.1 7E-05 47.3 14.3 155 52-218 176-334 (435)
224 4gq1_A NUP37; propeller, trans 91.3 19 0.00063 39.0 23.3 108 55-170 103-225 (393)
225 3dw8_B Serine/threonine-protei 91.1 1.4 4.8E-05 48.0 12.7 155 52-215 188-377 (447)
226 2z3z_A Dipeptidyl aminopeptida 90.9 7.5 0.00026 45.5 19.6 103 53-168 35-160 (706)
227 3tc9_A Hypothetical hydrolase; 90.9 12 0.00041 41.6 20.2 150 53-214 149-306 (430)
228 2ojh_A Uncharacterized protein 90.7 14 0.00049 36.6 23.3 101 104-214 20-122 (297)
229 2ymu_A WD-40 repeat protein; u 90.6 26 0.00088 39.4 36.8 181 52-254 273-456 (577)
230 1mda_H Methylamine dehydrogena 90.3 3.7 0.00013 45.1 14.9 187 52-257 30-242 (368)
231 2z3z_A Dipeptidyl aminopeptida 90.1 33 0.0011 39.9 31.2 155 54-213 93-295 (706)
232 2p4o_A Hypothetical protein; p 90.1 20 0.00067 37.3 22.8 150 53-215 82-245 (306)
233 2woz_A Kelch repeat and BTB do 89.8 19 0.00065 37.5 19.8 171 53-240 15-212 (318)
234 2xdw_A Prolyl endopeptidase; a 89.8 9.3 0.00032 45.2 19.1 156 51-213 242-416 (710)
235 3dr2_A Exported gluconolactona 89.5 21 0.00073 36.9 20.7 146 53-213 56-226 (305)
236 1jof_A Carboxy-CIS,CIS-muconat 89.3 25 0.00086 37.3 34.4 192 55-257 4-228 (365)
237 3fm0_A Protein CIAO1; WDR39,SG 89.3 24 0.00082 37.1 21.9 68 51-118 71-139 (345)
238 2xzm_R RACK1; ribosome, transl 89.0 25 0.00084 36.9 23.6 147 52-216 129-290 (343)
239 1fwx_A Nitrous oxide reductase 88.8 20 0.00069 41.7 20.1 182 52-256 100-309 (595)
240 3elq_A Arylsulfate sulfotransf 88.6 15 0.00051 42.6 18.8 123 96-221 366-550 (571)
241 2fp8_A Strictosidine synthase; 88.4 24 0.00081 36.8 19.3 145 54-211 31-216 (322)
242 3dwl_C Actin-related protein 2 88.3 4.1 0.00014 43.2 13.3 67 52-118 66-134 (377)
243 2qe8_A Uncharacterized protein 86.7 33 0.0011 36.2 19.3 70 53-123 77-161 (343)
244 2xn4_A Kelch-like protein 2; s 86.5 32 0.0011 35.4 24.5 194 52-263 60-282 (302)
245 1z68_A Fibroblast activation p 86.5 3.4 0.00012 48.7 12.3 104 53-167 26-143 (719)
246 2zwa_A Leucine carboxyl methyl 86.4 58 0.002 38.5 23.0 195 52-257 396-637 (695)
247 2uvk_A YJHT; unknown function, 86.4 36 0.0012 35.9 23.9 159 53-222 19-237 (357)
248 3c5m_A Oligogalacturonate lyas 85.7 13 0.00045 39.3 15.5 155 51-215 90-277 (396)
249 2ojh_A Uncharacterized protein 85.6 30 0.001 34.2 25.9 139 61-215 20-166 (297)
250 2ghs_A AGR_C_1268P; regucalcin 85.6 33 0.0011 36.0 18.5 146 95-256 60-213 (326)
251 3azo_A Aminopeptidase; POP fam 85.4 23 0.00077 41.0 18.5 151 51-214 139-328 (662)
252 3elq_A Arylsulfate sulfotransf 85.0 12 0.00043 43.2 15.4 98 23-125 178-302 (571)
253 2j04_A TAU60, YPL007P, hypothe 84.7 17 0.00058 42.3 16.4 109 51-170 139-262 (588)
254 2uvk_A YJHT; unknown function, 84.7 43 0.0015 35.3 21.3 195 52-257 64-344 (357)
255 3iuj_A Prolyl endopeptidase; h 84.1 49 0.0017 38.8 20.9 63 154-218 259-322 (693)
256 1xfd_A DIP, dipeptidyl aminope 83.1 19 0.00066 42.0 16.7 109 54-168 28-148 (723)
257 1yr2_A Prolyl oligopeptidase; 83.0 33 0.0011 40.6 18.9 62 155-218 295-357 (741)
258 2hes_X YDR267CP; beta-propelle 82.8 48 0.0017 34.5 22.1 62 54-115 25-89 (330)
259 3o4h_A Acylamino-acid-releasin 82.6 15 0.00051 41.9 15.2 106 94-215 120-231 (582)
260 1npe_A Nidogen, entactin; glyc 82.0 45 0.0015 33.5 25.7 192 52-264 46-246 (267)
261 1xfd_A DIP, dipeptidyl aminope 81.6 71 0.0024 37.0 20.9 65 51-120 70-148 (723)
262 3c5m_A Oligogalacturonate lyas 81.4 44 0.0015 35.1 17.4 70 51-123 45-119 (396)
263 3azo_A Aminopeptidase; POP fam 80.6 56 0.0019 37.5 19.3 68 51-118 197-277 (662)
264 3o4h_A Acylamino-acid-releasin 79.6 24 0.00082 40.2 15.5 67 51-119 159-231 (582)
265 2pm7_B Protein transport prote 79.4 58 0.002 33.2 27.4 108 52-165 20-134 (297)
266 2j04_A TAU60, YPL007P, hypothe 79.3 27 0.00091 40.7 15.4 149 50-214 94-257 (588)
267 2bkl_A Prolyl endopeptidase; m 79.2 59 0.002 38.1 19.1 69 49-119 75-160 (695)
268 2zux_A YESW protein; beta-prop 79.0 36 0.0012 39.2 16.0 108 63-174 151-314 (591)
269 4hw6_A Hypothetical protein, I 78.4 87 0.003 34.6 22.5 199 53-265 192-431 (433)
270 3amr_A 3-phytase; beta-propell 78.4 80 0.0028 34.2 22.4 200 53-266 40-274 (355)
271 2w18_A PALB2, fancn, partner a 77.8 83 0.0028 34.1 24.2 147 104-257 155-316 (356)
272 2j04_B YDR362CP, TAU91; beta p 76.5 30 0.001 39.5 15.0 154 53-217 225-392 (524)
273 3ott_A Two-component system se 75.6 50 0.0017 39.1 17.2 151 53-215 383-549 (758)
274 1yr2_A Prolyl oligopeptidase; 75.6 83 0.0028 37.1 19.1 74 51-124 277-359 (741)
275 3m0c_C LDL receptor, low-densi 75.0 1.5E+02 0.0051 35.7 25.2 190 53-257 435-634 (791)
276 1k32_A Tricorn protease; prote 73.4 51 0.0017 40.8 17.0 103 53-165 348-463 (1045)
277 2j04_B YDR362CP, TAU91; beta p 72.7 25 0.00084 40.2 12.9 110 53-171 277-394 (524)
278 4gq1_A NUP37; propeller, trans 71.9 1.1E+02 0.0036 32.8 17.4 70 53-123 156-226 (393)
279 3sre_A PON1, serum paraoxonase 71.2 1.2E+02 0.004 32.8 21.4 74 53-127 60-162 (355)
280 2ece_A 462AA long hypothetical 71.1 1.4E+02 0.0048 33.5 27.0 168 52-221 24-247 (462)
281 1k32_A Tricorn protease; prote 70.5 1.5E+02 0.005 36.6 20.2 147 52-213 307-463 (1045)
282 1z68_A Fibroblast activation p 69.9 41 0.0014 39.3 14.4 65 51-119 69-143 (719)
283 3bg1_A Protein SEC13 homolog; 69.4 19 0.00064 37.5 10.2 66 52-117 24-92 (316)
284 1k3i_A Galactose oxidase precu 68.8 1.4E+02 0.0049 34.6 18.7 68 52-123 252-329 (656)
285 2bkl_A Prolyl endopeptidase; m 68.8 1.8E+02 0.0061 33.8 22.6 154 51-219 130-313 (695)
286 3iuj_A Prolyl endopeptidase; h 68.5 1E+02 0.0036 36.0 17.6 72 52-123 244-323 (693)
287 2oit_A Nucleoporin 214KDA; NH2 68.4 1.4E+02 0.0049 32.6 20.0 111 52-171 103-230 (434)
288 2pm7_B Protein transport prote 68.0 1.1E+02 0.0037 31.1 22.2 65 53-117 67-134 (297)
289 2hes_X YDR267CP; beta-propelle 68.0 1.2E+02 0.004 31.4 22.7 65 52-116 69-139 (330)
290 3ott_A Two-component system se 67.4 76 0.0026 37.5 16.2 150 52-215 428-590 (758)
291 2ism_A Putative oxidoreductase 66.5 1.4E+02 0.0047 31.7 22.1 20 53-74 41-60 (352)
292 1xip_A Nucleoporin NUP159; bet 65.3 1.6E+02 0.0055 32.1 20.0 122 76-224 82-204 (388)
293 3v65_B Low-density lipoprotein 64.9 1.6E+02 0.0053 31.8 24.1 186 53-257 127-320 (386)
294 2zwa_A Leucine carboxyl methyl 63.2 1.7E+02 0.0059 34.4 18.0 156 53-217 451-639 (695)
295 1k3i_A Galactose oxidase precu 60.4 32 0.0011 40.2 10.9 140 65-218 168-328 (656)
296 1n7d_A LDL receptor, low-densi 58.7 90 0.0031 36.9 14.4 188 53-257 417-616 (699)
297 1ijq_A LDL receptor, low-densi 58.5 1.7E+02 0.006 30.2 27.9 190 52-257 40-240 (316)
298 2zuy_A YESX protein; beta-prop 58.4 89 0.003 36.2 13.4 107 64-174 156-318 (620)
299 2ece_A 462AA long hypothetical 58.0 2.4E+02 0.0081 31.6 30.0 191 52-254 94-351 (462)
300 3a9g_A Putative uncharacterize 55.0 2.2E+02 0.0074 30.3 17.4 21 53-74 39-59 (354)
301 3sov_A LRP-6, low-density lipo 52.7 2.2E+02 0.0076 29.7 24.2 187 53-257 46-240 (318)
302 3kya_A Putative phosphatase; s 51.8 3.1E+02 0.01 31.0 21.1 152 53-214 151-346 (496)
303 3v65_B Low-density lipoprotein 51.5 2.5E+02 0.0087 30.0 25.8 183 53-254 87-276 (386)
304 3amr_A 3-phytase; beta-propell 51.1 1.9E+02 0.0066 31.2 14.1 104 55-162 145-262 (355)
305 1npe_A Nidogen, entactin; glyc 49.5 2.1E+02 0.007 28.4 23.8 185 55-255 3-198 (267)
306 3m0c_C LDL receptor, low-densi 49.2 4.1E+02 0.014 31.8 26.1 183 55-254 397-588 (791)
307 4h3o_A Lectin; cadmium, plant 48.5 95 0.0033 27.1 9.4 62 94-173 18-79 (105)
308 3mez_B Mannose-specific lectin 48.0 88 0.003 27.7 9.2 61 53-124 24-84 (113)
309 2gop_A Trilobed protease; beta 46.8 2.5E+02 0.0085 28.5 18.8 66 51-119 68-165 (347)
310 3mez_B Mannose-specific lectin 45.6 1.1E+02 0.0039 26.9 9.6 62 94-172 23-84 (113)
311 4a5s_A Dipeptidyl peptidase 4 44.9 4.3E+02 0.015 30.8 19.4 65 50-119 70-145 (740)
312 1xd5_A Gastrodianin-1, antifun 43.5 1.4E+02 0.0049 26.1 9.9 52 59-124 25-76 (112)
313 3qqz_A Putative uncharacterize 42.3 2.9E+02 0.01 28.1 22.0 112 87-208 29-150 (255)
314 4h3o_A Lectin; cadmium, plant 41.9 95 0.0033 27.1 8.3 58 56-125 22-79 (105)
315 3tc9_A Hypothetical hydrolase; 41.7 3.8E+02 0.013 29.2 24.4 103 52-162 189-300 (430)
316 3sd2_A Putative member of DUF3 41.6 32 0.0011 30.3 4.8 39 703-754 30-68 (101)
317 3v64_C Agrin; beta propeller, 41.3 3.4E+02 0.012 28.5 24.0 187 52-257 83-277 (349)
318 3p5b_L Low density lipoprotein 39.3 3.9E+02 0.013 28.7 28.9 190 53-257 123-322 (400)
319 3p5b_L Low density lipoprotein 36.9 4.2E+02 0.015 28.4 26.3 183 55-254 85-276 (400)
320 1tl2_A L10, protein (tachylect 36.2 47 0.0016 33.8 5.9 26 53-79 51-77 (236)
321 2oit_A Nucleoporin 214KDA; NH2 36.1 4.5E+02 0.015 28.4 18.0 102 103-216 115-227 (434)
322 3a0c_A Mannose/sialic acid-bin 35.8 1.9E+02 0.0063 25.3 9.3 56 56-124 23-78 (110)
323 3a0c_A Mannose/sialic acid-bin 35.8 73 0.0025 28.0 6.6 59 95-172 20-78 (110)
324 1n7d_A LDL receptor, low-densi 35.5 1.2E+02 0.0041 35.9 10.3 68 145-218 551-621 (699)
325 3s94_A LRP-6, low-density lipo 34.3 5.9E+02 0.02 29.3 20.6 230 56-314 11-244 (619)
326 3d33_A Domain of unknown funct 34.2 66 0.0023 28.7 5.9 41 703-755 33-73 (108)
327 1xd5_A Gastrodianin-1, antifun 33.4 2E+02 0.0068 25.1 9.1 57 94-171 18-75 (112)
328 2xzh_A Clathrin heavy chain 1; 31.1 1.7E+02 0.0058 31.6 9.4 63 51-114 269-331 (365)
329 4a0p_A LRP6, LRP-6, low-densit 30.5 6.8E+02 0.023 28.8 26.3 143 55-210 8-154 (628)
330 2xbg_A YCF48-like protein; pho 30.2 4.7E+02 0.016 26.9 16.5 178 23-218 58-240 (327)
331 2gop_A Trilobed protease; beta 29.0 4.6E+02 0.016 26.4 15.0 56 62-123 42-102 (347)
332 3v64_C Agrin; beta propeller, 28.2 5.4E+02 0.018 26.9 27.2 143 53-210 44-190 (349)
333 3sov_A LRP-6, low-density lipo 27.3 5.4E+02 0.018 26.6 25.4 183 55-254 6-196 (318)
334 4a5s_A Dipeptidyl peptidase 4 26.5 8E+02 0.027 28.4 25.2 102 53-166 27-144 (740)
335 3bg1_A Protein SEC13 homolog; 25.5 4E+02 0.014 26.9 11.3 62 98-165 27-92 (316)
336 1xip_A Nucleoporin NUP159; bet 25.4 6.7E+02 0.023 27.1 19.4 99 52-166 96-194 (388)
337 1b2p_A Protein (lectin); manno 25.3 3.1E+02 0.011 24.2 9.0 51 61-124 38-88 (119)
338 3kya_A Putative phosphatase; s 23.4 8.2E+02 0.028 27.4 22.1 63 52-114 203-277 (496)
339 1bpo_A Protein (clathrin); cla 23.3 2.5E+02 0.0087 31.5 9.3 63 50-113 267-329 (494)
340 2xe4_A Oligopeptidase B; hydro 22.4 9.7E+02 0.033 27.9 18.2 59 153-212 294-355 (751)
341 1b2p_A Protein (lectin); manno 21.7 1.4E+02 0.0048 26.6 5.9 52 101-171 36-87 (119)
342 4a0p_A LRP6, LRP-6, low-densit 21.2 9.7E+02 0.033 27.5 26.1 185 52-257 47-239 (628)
343 3dzw_A Agglutinin; lectin, man 20.7 3.9E+02 0.013 23.1 8.5 60 94-172 18-77 (109)
344 3dzw_A Agglutinin; lectin, man 20.3 2.5E+02 0.0086 24.3 7.2 55 57-124 23-77 (109)
No 1
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.75 E-value=1.1e-15 Score=169.65 Aligned_cols=216 Identities=17% Similarity=0.303 Sum_probs=145.3
Q ss_pred cccccEeEEEeccCce-eee-eeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC--------cceeeeeeeec
Q 003001 26 DQVGLMDWHQQYIGKV-KHA-VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--------DVVDGIDIALG 95 (859)
Q Consensus 26 dq~G~~dW~~~~vG~~-~~~-~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~--------~~i~~l~~~~~ 95 (859)
+..++..|+.++ |.. ... ....|...+++||+++.+|.|+|+|++||+++|+..++.. ..+... +...
T Consensus 25 ~~~~~~~W~~~~-~~~~~~~~~~~~p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (376)
T 3q7m_A 25 QFTPTTAWSTSV-GSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVS 102 (376)
T ss_dssp SSCCEEEEEECC-TTTTTTSCCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEE
T ss_pred CCcceEEeEEec-CCCccccceeeccEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEe
Confidence 445789999987 432 111 1124666799999999999999999999999999998542 112222 2345
Q ss_pred CEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccC
Q 003001 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAA 174 (859)
Q Consensus 96 ~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~ 174 (859)
++.+++++.++.|+++|+.||+++|+..+..+.. ..+. .. ++.+++. .+|.|+++|+++|+++|++....
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~--~~p~------~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL--SRPV------VS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC--SCCE------EE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE--cCCE------EE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 5666666666799999999999999999876543 1122 22 5777775 48999999999999999998764
Q ss_pred cceeeee-EEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccC---------ccCceEEecCcEEEEEECC
Q 003001 175 ESVEVQQ-VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG---------FVGDVALVSSDTLVTLDTT 244 (859)
Q Consensus 175 ~~~~~~~-~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~---------~s~~~~~v~~~~lv~~d~~ 244 (859)
+...... ......++.+|+.+..| .++++|+.+|+.+|+.....+.+ ....+.+.+ +.+++.. .
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~g~~~g----~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~-~ 247 (376)
T 3q7m_A 174 PSLSLRGESAPTTAFGAAVVGGDNG----RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALA-Y 247 (376)
T ss_dssp -----CCCCCCEEETTEEEECCTTT----EEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEEC-T
T ss_pred CceeecCCCCcEEECCEEEEEcCCC----EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEe-c
Confidence 4321000 00123577888643333 59999999999999998665432 223333333 4443333 4
Q ss_pred CCeEEEEEeecCee
Q 003001 245 RSILVTVSFKNRKI 258 (859)
Q Consensus 245 ~~~l~v~~L~sg~~ 258 (859)
.+.+++++..+|+.
T Consensus 248 ~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 248 NGNLTALDLRSGQI 261 (376)
T ss_dssp TSCEEEEETTTCCE
T ss_pred CcEEEEEECCCCcE
Confidence 57889999888873
No 2
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.69 E-value=1.3e-15 Score=168.94 Aligned_cols=218 Identities=13% Similarity=0.222 Sum_probs=146.5
Q ss_pred ccccccccEeEEEeccCce------eeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecC
Q 003001 23 LYEDQVGLMDWHQQYIGKV------KHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGK 96 (859)
Q Consensus 23 l~edq~G~~dW~~~~vG~~------~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~ 96 (859)
.++.+.|++.|+..+-+.. .......|...+++||+++.+|.|+|||++||+++|+..++.. +... +...+
T Consensus 67 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~-p~~~~ 143 (376)
T 3q7m_A 67 ALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALSR-PVVSD 143 (376)
T ss_dssp EEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCSC-CEEET
T ss_pred EEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEcC-CEEEC
Confidence 3556789999999873221 1112234556789999999999999999999999999998755 2222 23445
Q ss_pred EEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCc
Q 003001 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE 175 (859)
Q Consensus 97 ~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~ 175 (859)
+.+++++.++.|+++|+.||+++|+.....+......... +...++.+++. .+|.|+++|..+|+++|+.....+
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA----PTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC----CEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC----cEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 5677676667999999999999999998665431000011 22225677775 489999999999999999987543
Q ss_pred ce--eeee-----EEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeE
Q 003001 176 SV--EVQQ-----VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSIL 248 (859)
Q Consensus 176 ~~--~~~~-----~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l 248 (859)
.. +..+ ..+...++.+|+.+..|. ++++|+.+|+.+|+...... ..+.+.++.+++.+. .+.+
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~----l~~~d~~tG~~~w~~~~~~~-----~~~~~~~~~l~~~~~-~g~l 289 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGN----LTALDLRSGQIMWKRELGSV-----NDFIVDGNRIYLVDQ-NDRV 289 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSC----EEEEETTTCCEEEEECCCCE-----EEEEEETTEEEEEET-TCCE
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcE----EEEEECCCCcEEeeccCCCC-----CCceEECCEEEEEcC-CCeE
Confidence 11 0111 011236788998766653 99999999999999864322 123334555555553 5789
Q ss_pred EEEEeecCe
Q 003001 249 VTVSFKNRK 257 (859)
Q Consensus 249 ~v~~L~sg~ 257 (859)
++++..+|+
T Consensus 290 ~~~d~~tG~ 298 (376)
T 3q7m_A 290 MALTIDGGV 298 (376)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 999988887
No 3
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.59 E-value=1.2e-13 Score=163.71 Aligned_cols=228 Identities=16% Similarity=0.161 Sum_probs=145.6
Q ss_pred ccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcce--------eeeeeeecCEE
Q 003001 27 QVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV--------DGIDIALGKYV 98 (859)
Q Consensus 27 q~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i--------~~l~~~~~~~~ 98 (859)
..++..|+.++-+.........|...+++||+++..+.|+|||++||+++|++.+..+... .+. ...++.
T Consensus 42 ~~~~~~W~~~~~~~~~~g~~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~--a~~~~~ 119 (582)
T 1flg_A 42 FKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGA--AIYGDK 119 (582)
T ss_dssp GGCEEEEEEECCTTCCSCCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCC--EEETTE
T ss_pred CCCcEEEEEECCCccCCcceeccEEECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCcc--EEECCE
Confidence 4588999998743322112235666799999999966699999999999999998754211 122 345566
Q ss_pred EEEEcCCCeEEEEeCCCCcEeEEEeccCcccc---CCcccccccccccCCC------eEEEEe-------CCEEEEEEcC
Q 003001 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS---KPLLLVPTNLKVDKDS------LILVSS-------KGCLHAVSSI 162 (859)
Q Consensus 99 V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls---~~~~~~~~~~~~~~~~------~VvV~~-------~g~l~ald~~ 162 (859)
|++++.++.|+|+|+.||+++|+.+....... ...+++ . ++ .|++.. +|.|+|||++
T Consensus 120 v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v------~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~ 192 (582)
T 1flg_A 120 VFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTI------V-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPD 192 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEE------E-ECTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred EEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEE------e-CCCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence 77666667999999999999999987653210 111221 2 23 566642 6899999999
Q ss_pred CCcEEEEEeccCcceee---------------------------------------eeEEEeecCCeEEEEEe-------
Q 003001 163 DGEILWTRDFAAESVEV---------------------------------------QQVIQLDESDQIYVVGY------- 196 (859)
Q Consensus 163 tG~~~W~~~~~~~~~~~---------------------------------------~~~v~~~~~~~vyvv~~------- 196 (859)
||+++|+.+.......+ ..+......+.||+...
T Consensus 193 tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~ 272 (582)
T 1flg_A 193 TGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNT 272 (582)
T ss_dssp TCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCG
T ss_pred CCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccC
Confidence 99999988653211000 00111124578887653
Q ss_pred -----cC--------CceeEEEEEEcCCCceeeeeeeecc--c---CccCceEEec----C---cEEEEEECCCCeEEEE
Q 003001 197 -----AG--------SSQFHAYQINAMNGELLNHETAAFS--G---GFVGDVALVS----S---DTLVTLDTTRSILVTV 251 (859)
Q Consensus 197 -----~g--------~~~~~v~ald~~tG~~~w~~~v~~~--~---~~s~~~~~v~----~---~~lv~~d~~~~~l~v~ 251 (859)
.| .+...++|||+.||+.+|+++.... . ..+..+++-. + ..+++.+ .+|.++++
T Consensus 273 ~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~-~~G~l~~l 351 (582)
T 1flg_A 273 WARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD-RNGFFYVV 351 (582)
T ss_dssp GGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC-TTSEEEEE
T ss_pred cccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC-CCceEEEE
Confidence 11 0113699999999999999975332 1 1222333211 1 2455554 56899999
Q ss_pred EeecCeeeEEEEee
Q 003001 252 SFKNRKIAFQETHL 265 (859)
Q Consensus 252 ~L~sg~~~~~~~~l 265 (859)
+..+|+. +-++++
T Consensus 352 D~~tG~~-lw~~~~ 364 (582)
T 1flg_A 352 DRSNGKL-QNAFPF 364 (582)
T ss_dssp ETTTCCE-EEEEES
T ss_pred ECCCCCE-eccccc
Confidence 9999883 444443
No 4
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.56 E-value=2.3e-13 Score=160.89 Aligned_cols=229 Identities=17% Similarity=0.180 Sum_probs=145.7
Q ss_pred ccEeEEEeccCceeeeeeeeeccCCCEEEEEeC-CCEEEEEEC-CCCccceEEEcCCCccee--------eeeeeecCEE
Q 003001 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTE-ENVIASLDL-RHGEIFWRHVLGINDVVD--------GIDIALGKYV 98 (859)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~-~g~l~ALd~-~tG~ilWR~~l~~~~~i~--------~l~~~~~~~~ 98 (859)
++..|+.++ |... .....|...+++||+++. ++.|+|||+ +||+++|++.+....... ...+...++.
T Consensus 40 l~~~W~~~~-~~~~-g~~~~P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (571)
T 2ad6_A 40 VKAAWSFST-GVLN-GHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ 117 (571)
T ss_dssp CEEEEEEEC-SCCS-CCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE
T ss_pred ccEEEEEEC-CCCC-CcccccEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCE
Confidence 578999987 4211 112356667999999999 899999999 999999999887542110 0012345667
Q ss_pred EEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe-------CCEEEEEEcCCCcEEEEEe
Q 003001 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 99 V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~tG~~~W~~~ 171 (859)
|++++.++.|+|+|+.||+++|+..+............+ .+. ++.|++.. +|.|+|||++||+++|++.
T Consensus 118 v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P---~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 118 IVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP---FVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC---EEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCC---EEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 777766679999999999999999876521100000111 222 57777753 6899999999999999998
Q ss_pred ccCccee----e--------------------------------eeEEEeecCCeEEEEEecC----------C--ceeE
Q 003001 172 FAAESVE----V--------------------------------QQVIQLDESDQIYVVGYAG----------S--SQFH 203 (859)
Q Consensus 172 ~~~~~~~----~--------------------------------~~~v~~~~~~~vyvv~~~g----------~--~~~~ 203 (859)
...+... + ..+......+.+|+....+ . +...
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 7532200 0 0011112457788754221 0 0125
Q ss_pred EEEEEcCCCceeeeeeeeccc----CccCceEEec---Cc----EEEEEECCCCeEEEEEeecCeeeEEEEee
Q 003001 204 AYQINAMNGELLNHETAAFSG----GFVGDVALVS---SD----TLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (859)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~~----~~s~~~~~v~---~~----~lv~~d~~~~~l~v~~L~sg~~~~~~~~l 265 (859)
++|||+.||+.+|+++..... +....+++++ ++ ++++.+ .+|.+++++..+|+. +-++++
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~-~w~~~~ 344 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNRENGNL-IVAEKV 344 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCE-EEEEES
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeC-CCcEEEEEECCCCCE-Eeeecc
Confidence 999999999999999754211 1112333333 22 344554 468999999999883 333443
No 5
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.56 E-value=9.1e-14 Score=167.56 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=144.7
Q ss_pred cccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcce--------eeeeeeecCEEE
Q 003001 28 VGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV--------DGIDIALGKYVI 99 (859)
Q Consensus 28 ~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i--------~~l~~~~~~~~V 99 (859)
.++..|++++ |... .....|...+++||+++.++.|+|||++||+++|++.+...... ....+...++.|
T Consensus 54 ~~~~~W~~~~-~~~~-g~~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v 131 (677)
T 1kb0_A 54 DLGLAWSYNL-ESTR-GVEATPVVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKV 131 (677)
T ss_dssp GEEEEEEEEC-CCCS-CCCCCCEEETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEE
T ss_pred CccEEEEEEC-CCCC-CceeCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEE
Confidence 4678999987 4221 11234666799999999999999999999999999998754211 001123455677
Q ss_pred EEEcCCCeEEEEeCCCCcEeEEEecc-CccccCCcccccccccccCCCeEEEEe-------CCEEEEEEcCCCcEEEEEe
Q 003001 100 TLSSDGSTLRAWNLPDGQMVWESFLR-GSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 100 ~Vs~~g~~v~Ald~~tG~llW~~~~~-~~~ls~~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~tG~~~W~~~ 171 (859)
++++.++.|+|||+.||+++|+.... .... ...... .+...++.|++.. +|.|+|+|+.||+++|++.
T Consensus 132 ~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~--~~~~~~--~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 132 YVGAWDGRLIALDAATGKEVWHQNTFEGQKG--SLTITG--APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEETTTTCCS--SCBCCS--CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEcCCCEEEEEECCCCCEEeeecCCcCcCc--Cccccc--CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 77776779999999999999999976 2110 000111 0122257777743 5899999999999999998
Q ss_pred ccCcce------------------------------eeeeEEEeecCCeEEEEEecC------------C---ceeEEEE
Q 003001 172 FAAESV------------------------------EVQQVIQLDESDQIYVVGYAG------------S---SQFHAYQ 206 (859)
Q Consensus 172 ~~~~~~------------------------------~~~~~v~~~~~~~vyvv~~~g------------~---~~~~v~a 206 (859)
...+.. ....+......+.||+....+ + +...++|
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 743220 001122123567888654332 0 0124999
Q ss_pred EEcCCCceeeeeeeeccc----CccCceEEec----C---cEEEEEECCCCeEEEEEeecCee
Q 003001 207 INAMNGELLNHETAAFSG----GFVGDVALVS----S---DTLVTLDTTRSILVTVSFKNRKI 258 (859)
Q Consensus 207 ld~~tG~~~w~~~v~~~~----~~s~~~~~v~----~---~~lv~~d~~~~~l~v~~L~sg~~ 258 (859)
||+.||+.+|+++..... .....+++++ + ..++..+ .+|.++++|..+|+.
T Consensus 288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~ 349 (677)
T 1kb0_A 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKF 349 (677)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCE
T ss_pred EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCE
Confidence 999999999999753321 1112233332 2 3455555 468999999999883
No 6
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.55 E-value=1.2e-13 Score=163.92 Aligned_cols=222 Identities=18% Similarity=0.154 Sum_probs=144.0
Q ss_pred cccEeEEEeccCceeeeeeeeeccCCCEEEEEeC-CCEEEEEEC-CCCccceEEEcCCCcce----------eeeeeee-
Q 003001 28 VGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTE-ENVIASLDL-RHGEIFWRHVLGINDVV----------DGIDIAL- 94 (859)
Q Consensus 28 ~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~-~g~l~ALd~-~tG~ilWR~~l~~~~~i----------~~l~~~~- 94 (859)
.++..|++++ |... .....|...+++||+++. ++.|+|||+ +||+++|++.+...... .++ ..
T Consensus 39 ~l~~~W~~~~-g~~~-g~~~tP~v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~--av~ 114 (599)
T 1w6s_A 39 QLRPAWTFST-GLLN-GHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGL--AYW 114 (599)
T ss_dssp GEEEEEEEEC-SCCS-CCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCC--EEE
T ss_pred CCcEEEEEEC-CCCC-CceeccEEECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccce--EEE
Confidence 4679999987 4211 112356667999999999 899999999 99999999988654211 122 33
Q ss_pred -cCEE----EEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe-------CCEEEEEEcC
Q 003001 95 -GKYV----ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSI 162 (859)
Q Consensus 95 -~~~~----V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~ 162 (859)
.++. |++++.++.|+|+|+.||+++|+..+..... ...... .+...++.|++.. +|.|+|||++
T Consensus 115 p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~--~~~~~s--sP~v~~g~V~vg~~g~e~g~~g~v~A~D~~ 190 (599)
T 1w6s_A 115 PGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKV--GSTLTI--APYVVKDKVIIGSSGAELGVRGYLTAYDVK 190 (599)
T ss_dssp CCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGG--TCBCCS--CCEEETTEEEECCBCGGGTCCCEEEEEETT
T ss_pred ecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCc--cceeec--CCEEECCEEEEEecccccCCCCeEEEEECC
Confidence 4444 7777666799999999999999998765211 000110 0112257777743 6899999999
Q ss_pred CCcEEEEEeccCcceee------------------------------------eeEEEeecCCeEEEEEecCC-------
Q 003001 163 DGEILWTRDFAAESVEV------------------------------------QQVIQLDESDQIYVVGYAGS------- 199 (859)
Q Consensus 163 tG~~~W~~~~~~~~~~~------------------------------------~~~v~~~~~~~vyvv~~~g~------- 199 (859)
||+++|++....+..+. ..+......+.||+....+.
T Consensus 191 TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r 270 (599)
T 1w6s_A 191 TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR 270 (599)
T ss_dssp TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred CCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence 99999999876432100 00111135678887543320
Q ss_pred -----ceeEEEEEEcCCCceeeeeeeecc--cC--ccCceEEec-----C---cEEEEEECCCCeEEEEEeecCee
Q 003001 200 -----SQFHAYQINAMNGELLNHETAAFS--GG--FVGDVALVS-----S---DTLVTLDTTRSILVTVSFKNRKI 258 (859)
Q Consensus 200 -----~~~~v~ald~~tG~~~w~~~v~~~--~~--~s~~~~~v~-----~---~~lv~~d~~~~~l~v~~L~sg~~ 258 (859)
+.-.++|||+.||+.+|+++.... ++ ....+++++ + .+++..+ .+|.+++++..+|+.
T Consensus 271 ~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 271 PGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGAL 345 (599)
T ss_dssp CSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCE
T ss_pred CCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEEC-CCcEEEEEECCCCCE
Confidence 012599999999999999975432 11 112233332 2 2454455 468999999999883
No 7
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.55 E-value=1.9e-13 Score=165.13 Aligned_cols=223 Identities=15% Similarity=0.150 Sum_probs=141.0
Q ss_pred cccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCccee--------eeeeeecCEEE
Q 003001 28 VGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVD--------GIDIALGKYVI 99 (859)
Q Consensus 28 ~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~--------~l~~~~~~~~V 99 (859)
.++..|+.++ |... .....|...+++||+++.++.|+|||++||+++|++......... ...+...++.|
T Consensus 47 ~l~~~W~~~~-~~~~-~~~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 124 (689)
T 1yiq_A 47 QLGLAWSYKL-DLDR-GVEATPIVVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKV 124 (689)
T ss_dssp GEEEEEEEEC-SSCS-CCCCCCEEETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEE
T ss_pred CceEEEEEEC-CCCC-CceecCEEECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEE
Confidence 3568999987 3321 112346667999999999999999999999999999876542110 00123455677
Q ss_pred EEEcCCCeEEEEeCCCCcEeEEEecc-CccccCCcccccccccccCCCeEEEEe-------CCEEEEEEcCCCcEEEEEe
Q 003001 100 TLSSDGSTLRAWNLPDGQMVWESFLR-GSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 100 ~Vs~~g~~v~Ald~~tG~llW~~~~~-~~~ls~~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~tG~~~W~~~ 171 (859)
++++.++.|+|||+.||+++|+.... .... ...... .+...++.|++.. +|.|+|+|++||+++|++.
T Consensus 125 ~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~--~~~~~~--sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 125 YVGVLDGRLEAIDAKTGQRAWSVDTRADHKR--SYTITG--APRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECCSCTTS--CCBCCS--CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEccCCEEEEEECCCCCEeeeecCcCCCCC--CccccC--CcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 77776779999999999999999875 2211 000110 0112257777742 5899999999999999997
Q ss_pred ccC--cce--------------------------e-eeeEEEeecCCeEEEEEecCC------------c---eeEEEEE
Q 003001 172 FAA--ESV--------------------------E-VQQVIQLDESDQIYVVGYAGS------------S---QFHAYQI 207 (859)
Q Consensus 172 ~~~--~~~--------------------------~-~~~~v~~~~~~~vyvv~~~g~------------~---~~~v~al 207 (859)
... +.. . -..+......+.||+....+. . ...++|+
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 421 100 0 001111124677886443321 0 0149999
Q ss_pred EcCCCceeeeeeeecc--cC--ccCceEEec----Cc---EEEEEECCCCeEEEEEeecCe
Q 003001 208 NAMNGELLNHETAAFS--GG--FVGDVALVS----SD---TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 208 d~~tG~~~w~~~v~~~--~~--~s~~~~~v~----~~---~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+.||+.+|+++.... ++ ....+++.+ +. .+++.+ .+|.+++++..+|+
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGE 340 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCC
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCC
Confidence 9999999999975321 11 222333321 21 455554 46889999999988
No 8
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.53 E-value=2.8e-13 Score=163.11 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=140.7
Q ss_pred cccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcce---------eeeeeeecCEE
Q 003001 28 VGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV---------DGIDIALGKYV 98 (859)
Q Consensus 28 ~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i---------~~l~~~~~~~~ 98 (859)
.++..|++++ |... .....|...+++||+++.+|.|+|||++||+++|++.+...... ... +...++.
T Consensus 43 ~l~~~W~~~~-~~~~-~~~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 119 (668)
T 1kv9_A 43 SLGLAWYMDL-DNTR-GLEATPLFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRG-VALWGDK 119 (668)
T ss_dssp GEEEEEEEEC-SCCS-CCCCCCEEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC-CEEEBTE
T ss_pred CcceEEEEEC-CCCC-CcccCCEEECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccc-eEEECCE
Confidence 4668999987 3321 11234666799999999999999999999999999987654211 111 2334556
Q ss_pred EEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe-------CCEEEEEEcCCCcEEEEEe
Q 003001 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 99 V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~tG~~~W~~~ 171 (859)
|++++.++.|+|||+.||+++|+.....+... ..... .+...++.|++.. +|.|+|||++||+++|++.
T Consensus 120 v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~--~~~~~--~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 120 VYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP--YSITG--APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSCTTSS--CBCCS--CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEeeeeccCCCCCc--ceecC--CCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 77777667999999999999999988533210 00111 0122257777742 4899999999999999997
Q ss_pred ccC--ccee---------------------------eeeEEEeecCCeEEEEEecCC---------------ceeEEEEE
Q 003001 172 FAA--ESVE---------------------------VQQVIQLDESDQIYVVGYAGS---------------SQFHAYQI 207 (859)
Q Consensus 172 ~~~--~~~~---------------------------~~~~v~~~~~~~vyvv~~~g~---------------~~~~v~al 207 (859)
... +... -..+......+.+|+....+. +...++||
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 521 1100 000111124577886543321 01149999
Q ss_pred EcCCCceeeeeeeecc--cC--ccCceEEe----cCc---EEEEEECCCCeEEEEEeecCe
Q 003001 208 NAMNGELLNHETAAFS--GG--FVGDVALV----SSD---TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 208 d~~tG~~~w~~~v~~~--~~--~s~~~~~v----~~~---~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+.||+.+|+++.... ++ ....+++. ++. .++..+ .+|.+++++..+|+
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGK 335 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCC
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCC
Confidence 9999999999976421 11 22222222 222 344554 46889999988888
No 9
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.46 E-value=9.6e-14 Score=154.96 Aligned_cols=186 Identities=12% Similarity=0.045 Sum_probs=99.6
Q ss_pred eeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc
Q 003001 48 TQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 48 ~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~ 127 (859)
.|...+++||+++.+|.|+|+|++||+++|+... .+ +...+...++.++++++.++.|+|||++||+.+|+++...+
T Consensus 4 sP~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~--~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 4 TVTLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DP--VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp ----CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CC--SCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred CCeeeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CC--ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 4666799999999999999999999999999988 32 22221223333555555667999999999999999876533
Q ss_pred cccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 128 KHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
......+. ...++.+++. .+|.|+++|+++|+++|++...... .. ...++.+|+.+.+| .+++
T Consensus 81 ~~~~~sp~------~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~----~~--~p~~~~v~~~~~dg----~v~a 144 (369)
T 2hz6_A 81 ELVQASPC------RSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFAD----SL--SPSTSLLYLGRTEY----TITM 144 (369)
T ss_dssp HHHTTCSC------C-----CCCCEEEEEEEEECCC----------------------------EEEEEEEE----EEEC
T ss_pred cccccCce------EecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcc----cc--cccCCEEEEEecCC----EEEE
Confidence 21011111 1124555553 5899999999999999998765321 11 12567788766554 5999
Q ss_pred EEcCCCceeeeeeeecccCccCceEEec----CcEEEEEECCCCeEEEEEeecCe
Q 003001 207 INAMNGELLNHETAAFSGGFVGDVALVS----SDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 207 ld~~tG~~~w~~~v~~~~~~s~~~~~v~----~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|+.+|+.+|+........ +.+.+ ++.+++.+ ..|.+++.+..+|+
T Consensus 145 ~d~~tG~~~W~~~~~~~~~----~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 145 YDTKTRELRWNATYFDYAA----SLPEDDVDYKMSHFVSN-GDGLVVTVDSESGD 194 (369)
T ss_dssp CCSSSSSCCCEEEEEEECC----BCCCCCTTCCCCEEEEE-TSCEEEEECTTTCC
T ss_pred EECCCCCEEEeEecccccC----ccccCCccccceEEEEC-CCCEEEEEECCCCc
Confidence 9999999999987533211 11111 12233333 24677788777776
No 10
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.45 E-value=1.1e-11 Score=149.48 Aligned_cols=191 Identities=15% Similarity=0.198 Sum_probs=115.4
Q ss_pred cccccccEeEEEeccCceee-------eeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcC-CC---cceeeeee
Q 003001 24 YEDQVGLMDWHQQYIGKVKH-------AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLG-IN---DVVDGIDI 92 (859)
Q Consensus 24 ~edq~G~~dW~~~~vG~~~~-------~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~-~~---~~i~~l~~ 92 (859)
++.+.|+..|+++.-..... .....+...+++||+++.+|.|+|||++||+++|+..+. .. ..+... +
T Consensus 92 lD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~-p 170 (677)
T 1kb0_A 92 IDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA-P 170 (677)
T ss_dssp EETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC-C
T ss_pred EECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccC-c
Confidence 34578999999987332110 011234556899999999999999999999999999986 21 112222 2
Q ss_pred eecCEEEEEEcC------CCeEEEEeCCCCcEeEEEeccCccccCCc------------------cc--cc----ccccc
Q 003001 93 ALGKYVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHSKPL------------------LL--VP----TNLKV 142 (859)
Q Consensus 93 ~~~~~~V~Vs~~------g~~v~Ald~~tG~llW~~~~~~~~ls~~~------------------~~--~~----~~~~~ 142 (859)
...++.|+++.. ++.|+|||+.||+++|++....+..+... .. -+ .....
T Consensus 171 ~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~ 250 (677)
T 1kb0_A 171 RVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTF 250 (677)
T ss_dssp EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEE
T ss_pred EEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeE
Confidence 344556666543 46899999999999999987544310000 00 00 00011
Q ss_pred c-CCCeEEEEe-CC-------------------EEEEEEcCCCcEEEEEeccCcce----eeee--EEEeecCC----eE
Q 003001 143 D-KDSLILVSS-KG-------------------CLHAVSSIDGEILWTRDFAAESV----EVQQ--VIQLDESD----QI 191 (859)
Q Consensus 143 ~-~~~~VvV~~-~g-------------------~l~ald~~tG~~~W~~~~~~~~~----~~~~--~v~~~~~~----~v 191 (859)
+ ..+.|++.. ++ .|+|||++||+++|+++...... ...+ +.+...++ .+
T Consensus 251 d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l 330 (677)
T 1kb0_A 251 DAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVI 330 (677)
T ss_dssp ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEE
T ss_pred cCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEE
Confidence 1 135666642 32 59999999999999988643210 0001 11111123 23
Q ss_pred EEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 192 YVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 192 yvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
|+.+.. ..+++||..||+++|+.+
T Consensus 331 ~~~~~~----G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 331 LHAPKN----GFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp EECCTT----SEEEEEETTTCCEEEEEE
T ss_pred EEECCC----CEEEEEECCCCCEecccc
Confidence 332222 258888888888888765
No 11
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.44 E-value=1.9e-11 Score=144.66 Aligned_cols=194 Identities=14% Similarity=0.203 Sum_probs=117.4
Q ss_pred cccccccEeEEEeccCceeee-----eeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc---ceeeeeeeec
Q 003001 24 YEDQVGLMDWHQQYIGKVKHA-----VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIALG 95 (859)
Q Consensus 24 ~edq~G~~dW~~~~vG~~~~~-----~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~---~i~~l~~~~~ 95 (859)
++.+.|+..|++..-...... .-..|...+++||+++.++.|+|||++||+++|++.+.... .+...+...+
T Consensus 83 lD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~ 162 (582)
T 1flg_A 83 LDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVK 162 (582)
T ss_dssp EESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEE
T ss_pred EECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeC
Confidence 356789999999874322110 01234456899999999999999999999999999986531 1222212223
Q ss_pred C-----EEEEEEcC------CCeEEEEeCCCCcEeEEEeccCcccc------------CCccc----------------c
Q 003001 96 K-----YVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHS------------KPLLL----------------V 136 (859)
Q Consensus 96 ~-----~~V~Vs~~------g~~v~Ald~~tG~llW~~~~~~~~ls------------~~~~~----------------~ 136 (859)
+ ..|+++.. .+.|+|+|+.||+++|+......... ..... .
T Consensus 163 ~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~ 242 (582)
T 1flg_A 163 DGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSH 242 (582)
T ss_dssp CTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGG
T ss_pred CCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCcccccccccccccc
Confidence 2 16776542 46899999999999998875311000 00000 0
Q ss_pred c-----cccccc-CCCeEEEEe---------------------C----CEEEEEEcCCCcEEEEEeccCcce----eeee
Q 003001 137 P-----TNLKVD-KDSLILVSS---------------------K----GCLHAVSSIDGEILWTRDFAAESV----EVQQ 181 (859)
Q Consensus 137 ~-----~~~~~~-~~~~VvV~~---------------------~----g~l~ald~~tG~~~W~~~~~~~~~----~~~~ 181 (859)
+ .....+ ..+.||+-. + +.|+|||++||+++|+++...... ...+
T Consensus 243 gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~ 322 (582)
T 1flg_A 243 GGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNE 322 (582)
T ss_dssp CBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCC
T ss_pred CCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCC
Confidence 0 000111 236677643 1 689999999999999997643210 0011
Q ss_pred -E-EEee-cCC----eEEEEEecCCceeEEEEEEcCCCceeeeeeee
Q 003001 182 -V-IQLD-ESD----QIYVVGYAGSSQFHAYQINAMNGELLNHETAA 221 (859)
Q Consensus 182 -~-v~~~-~~~----~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~ 221 (859)
+ .+.. .++ .+++.+.+| .+++||+.||+++|+....
T Consensus 323 p~l~~~~~~~G~~~~~v~~~~~~G----~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 323 LVLFDYKAKDGKIVKATAHADRNG----FFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp CEEEEEECSSSCEEEEEEEECTTS----EEEEEETTTCCEEEEEESS
T ss_pred cEEEeeecCCCCEEEEEEEECCCc----eEEEEECCCCCEecccccc
Confidence 1 1111 233 233322223 6999999999999987653
No 12
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.41 E-value=1.2e-11 Score=132.43 Aligned_cols=182 Identities=9% Similarity=0.131 Sum_probs=119.2
Q ss_pred ccccccccccEeEEEeccC--ceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEE
Q 003001 21 LSLYEDQVGLMDWHQQYIG--KVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYV 98 (859)
Q Consensus 21 ~Al~edq~G~~dW~~~~vG--~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~ 98 (859)
..+++.+.|++.|+...-+ .+....+. .++++++ +..+.|.++|+ +|+++|+...+....+.......++.+
T Consensus 17 v~~~d~~tG~~~w~~~~~~~~~~~~~~~~----pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~ 90 (276)
T 3no2_A 17 IAIINKDTKEIVWEYPLEKGWECNSVAAT----KAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNA 90 (276)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEEEC----TTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCE
T ss_pred EEEEECCCCeEEEEeCCCccCCCcCeEEC----CCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCE
Confidence 4567777999999998632 12222222 2667777 66788999999 999999999864322333322334445
Q ss_pred EEEEcC-CCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCc
Q 003001 99 ITLSSD-GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAE 175 (859)
Q Consensus 99 V~Vs~~-g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~ 175 (859)
++.... .+.+.++|+ +|+++|++.+..... .. ...+.......++.+++. .+++|+++|++ |+++|++..+..
T Consensus 91 lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~-~~-~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~ 166 (276)
T 3no2_A 91 LVAWCGHPSTILEVNM-KGEVLSKTEFETGIE-RP-HAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT 166 (276)
T ss_dssp EEEEESTTEEEEEECT-TSCEEEEEEECCSCS-SG-GGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC
T ss_pred EEEecCCCCEEEEEeC-CCCEEEEEeccCCCC-cc-cccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC
Confidence 554333 568999997 899999998764321 00 000000112224555554 48999999988 999999987632
Q ss_pred ceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 176 SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 176 ~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
.. .+. ...++.+++.+..++ ++.++|+.||+.+|+..
T Consensus 167 ~~---~~~-~~~~g~~~v~~~~~~---~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 167 PF---SSA-FLDNGDCLVACGDAH---CFVQLNLESNRIVRRVN 203 (276)
T ss_dssp CC---EEE-ECTTSCEEEECBTTS---EEEEECTTTCCEEEEEE
T ss_pred cc---cee-EcCCCCEEEEeCCCC---eEEEEeCcCCcEEEEec
Confidence 22 121 235666776666554 69999999999999996
No 13
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.40 E-value=7e-12 Score=148.61 Aligned_cols=192 Identities=14% Similarity=0.189 Sum_probs=120.4
Q ss_pred cc-ccccEeEEEeccCceee-------eeeeeecc--CCCE----EEEEeCCCEEEEEECCCCccceEEEcCCCc---ce
Q 003001 25 ED-QVGLMDWHQQYIGKVKH-------AVFHTQKT--GRKR----VVVSTEENVIASLDLRHGEIFWRHVLGIND---VV 87 (859)
Q Consensus 25 ed-q~G~~dW~~~~vG~~~~-------~~f~~~~~--~~~~----Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~---~i 87 (859)
+. +.|+..|+++.-..... ..-..|.. .+++ ||+++.++.|+|||++||+++|++.+.... .+
T Consensus 79 D~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~ 158 (599)
T 1w6s_A 79 GLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTL 158 (599)
T ss_dssp ETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBC
T ss_pred eCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCcccee
Confidence 44 79999999987332110 00112444 4666 999999999999999999999999986521 12
Q ss_pred eeeeeeecCEEEEEEcC------CCeEEEEeCCCCcEeEEEeccCccccC--------Cccc-----------------c
Q 003001 88 DGIDIALGKYVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHSK--------PLLL-----------------V 136 (859)
Q Consensus 88 ~~l~~~~~~~~V~Vs~~------g~~v~Ald~~tG~llW~~~~~~~~ls~--------~~~~-----------------~ 136 (859)
... +...++.|++++. ++.|+|+|+.||+++|++....+.... ..+. .
T Consensus 159 ~ss-P~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~ 237 (599)
T 1w6s_A 159 TIA-PYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKI 237 (599)
T ss_dssp CSC-CEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGG
T ss_pred ecC-CEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceec
Confidence 222 2334456666542 469999999999999999986543100 0000 0
Q ss_pred cc-----ccccc-CCCeEEEEe-C----------------CEEEEEEcCCCcEEEEEeccCcce----eeee--EEEee-
Q 003001 137 PT-----NLKVD-KDSLILVSS-K----------------GCLHAVSSIDGEILWTRDFAAESV----EVQQ--VIQLD- 186 (859)
Q Consensus 137 ~~-----~~~~~-~~~~VvV~~-~----------------g~l~ald~~tG~~~W~~~~~~~~~----~~~~--~v~~~- 186 (859)
+. ....+ ..+.||+.. + +.|+|||++||+++|+++...... ...+ +.+..
T Consensus 238 gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~ 317 (599)
T 1w6s_A 238 GGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKD 317 (599)
T ss_dssp CCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEC
T ss_pred CCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccc
Confidence 00 00111 245666643 3 389999999999999998764321 0111 12111
Q ss_pred cCC---eEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003001 187 ESD---QIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 187 ~~~---~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v 220 (859)
.++ .+++.+... ..+++||+.||+++|+.+.
T Consensus 318 ~~G~~~~~v~~~~~~---G~l~~lD~~tG~~lw~~~~ 351 (599)
T 1w6s_A 318 KDGKARKLLTHPDRN---GIVYTLDRTDGALVSANKL 351 (599)
T ss_dssp TTSCEEEEEEEECTT---SEEEEEETTTCCEEEEEES
T ss_pred cCCcEEEEEEEECCC---cEEEEEECCCCCEeecccc
Confidence 234 344433222 3699999999999999864
No 14
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.40 E-value=4.6e-11 Score=144.23 Aligned_cols=100 Identities=13% Similarity=0.248 Sum_probs=70.4
Q ss_pred cccccccEeEEEeccCceee-------eeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcC-CCc---ceeeeee
Q 003001 24 YEDQVGLMDWHQQYIGKVKH-------AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLG-IND---VVDGIDI 92 (859)
Q Consensus 24 ~edq~G~~dW~~~~vG~~~~-------~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~-~~~---~i~~l~~ 92 (859)
++.+.|+..|++..-..... .....|...+++||+++.+|.|+|||++||+++|+.... ... .+... +
T Consensus 85 lD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~s-P 163 (689)
T 1yiq_A 85 LDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGA-P 163 (689)
T ss_dssp EETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSC-C
T ss_pred EECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCC-c
Confidence 35578999999976221110 011234556899999999999999999999999999985 221 12222 2
Q ss_pred eecCEEEEEEcC------CCeEEEEeCCCCcEeEEEec
Q 003001 93 ALGKYVITLSSD------GSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 93 ~~~~~~V~Vs~~------g~~v~Ald~~tG~llW~~~~ 124 (859)
...++.|+++.. ++.|+|||+.||+++|++..
T Consensus 164 ~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 201 (689)
T 1yiq_A 164 RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT 201 (689)
T ss_dssp EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecc
Confidence 334556666542 36899999999999999985
No 15
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.39 E-value=5e-11 Score=143.46 Aligned_cols=190 Identities=15% Similarity=0.231 Sum_probs=113.4
Q ss_pred cccccccEeEEEeccCceee-------eeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc---ceeeeeee
Q 003001 24 YEDQVGLMDWHQQYIGKVKH-------AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIA 93 (859)
Q Consensus 24 ~edq~G~~dW~~~~vG~~~~-------~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~---~i~~l~~~ 93 (859)
++.+.|+..|++..-..... .....|...+++||+++.+|.|+|||++||+++|+..+.... .+... +.
T Consensus 81 lD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~-P~ 159 (668)
T 1kv9_A 81 VDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGA-PR 159 (668)
T ss_dssp EETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSC-CE
T ss_pred EECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCC-CE
Confidence 34578999999976322110 001224556889999999999999999999999999985321 12222 23
Q ss_pred ecCEEEEEEcC------CCeEEEEeCCCCcEeEEEeccCc--cccCCc-------ccc----------c----cccccc-
Q 003001 94 LGKYVITLSSD------GSTLRAWNLPDGQMVWESFLRGS--KHSKPL-------LLV----------P----TNLKVD- 143 (859)
Q Consensus 94 ~~~~~V~Vs~~------g~~v~Ald~~tG~llW~~~~~~~--~ls~~~-------~~~----------~----~~~~~~- 143 (859)
..++.|+++.. ++.|+|||+.||+++|++..... ...... +.. + .....+
T Consensus 160 v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~ 239 (668)
T 1kv9_A 160 VVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP 239 (668)
T ss_dssp EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET
T ss_pred EECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC
Confidence 44556666543 36899999999999999986321 100000 000 0 000112
Q ss_pred CCCeEEEE-eCC-------------------EEEEEEcCCCcEEEEEeccCcce------eeeeEEEeecCCe----EEE
Q 003001 144 KDSLILVS-SKG-------------------CLHAVSSIDGEILWTRDFAAESV------EVQQVIQLDESDQ----IYV 193 (859)
Q Consensus 144 ~~~~VvV~-~~g-------------------~l~ald~~tG~~~W~~~~~~~~~------~~~~~v~~~~~~~----vyv 193 (859)
..+.|++. .++ .|+|||++||+++|+++...... .+..+.+...++. +++
T Consensus 240 ~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~ 319 (668)
T 1kv9_A 240 ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQ 319 (668)
T ss_dssp TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEE
Confidence 13566664 344 49999999999999998742110 1111111112332 333
Q ss_pred EEecCCceeEEEEEEcCCCceeeee
Q 003001 194 VGYAGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 194 v~~~g~~~~~v~ald~~tG~~~w~~ 218 (859)
.+.. ..+++||..||+++|..
T Consensus 320 ~~~~----G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 320 APKN----GFFYVLDRTNGKLISAE 340 (668)
T ss_dssp CCTT----SEEEEEETTTCCEEEEE
T ss_pred ECCC----CEEEEEECCCCCEeccc
Confidence 2222 25888888888888443
No 16
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.39 E-value=1.2e-11 Score=146.06 Aligned_cols=190 Identities=17% Similarity=0.206 Sum_probs=119.5
Q ss_pred ccccEeEEEeccCcee-e------eeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc---ceeeeeeeecC
Q 003001 27 QVGLMDWHQQYIGKVK-H------AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIALGK 96 (859)
Q Consensus 27 q~G~~dW~~~~vG~~~-~------~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~---~i~~l~~~~~~ 96 (859)
+.|+..|++++-.... . ..-..|...+++||+++.+|.|+|||++||+++|++.+.... .+... +...+
T Consensus 82 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~-P~v~~ 160 (571)
T 2ad6_A 82 DPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA-PFVAK 160 (571)
T ss_dssp CTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC-CEEET
T ss_pred CCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccC-CEEEC
Confidence 7899999998633211 0 001235566899999999999999999999999999986521 12222 23345
Q ss_pred EEEEEEcC------CCeEEEEeCCCCcEeEEEeccCcccc---CC-----cccc-----------------c-----ccc
Q 003001 97 YVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHS---KP-----LLLV-----------------P-----TNL 140 (859)
Q Consensus 97 ~~V~Vs~~------g~~v~Ald~~tG~llW~~~~~~~~ls---~~-----~~~~-----------------~-----~~~ 140 (859)
+.|+++.. ++.|+|+|+.||+++|++....+... .+ .+.. + ...
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 56666654 46999999999999999987653210 00 0000 0 000
Q ss_pred ccc-CCCeEEEEe-C----------------CEEEEEEcCCCcEEEEEeccCcc-----eeeeeE-EEeecCC---eEEE
Q 003001 141 KVD-KDSLILVSS-K----------------GCLHAVSSIDGEILWTRDFAAES-----VEVQQV-IQLDESD---QIYV 193 (859)
Q Consensus 141 ~~~-~~~~VvV~~-~----------------g~l~ald~~tG~~~W~~~~~~~~-----~~~~~~-v~~~~~~---~vyv 193 (859)
..+ ..+.|++.. + +.|+|||++||+++|+++..... .....+ .+...++ .+++
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS 320 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence 112 135666643 1 36999999999999999865321 100111 1111244 2343
Q ss_pred EEecCCceeEEEEEEcCCCceeeeeee
Q 003001 194 VGYAGSSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 194 v~~~g~~~~~v~ald~~tG~~~w~~~v 220 (859)
.+... ..+++||+.||+++|+.++
T Consensus 321 ~~~~~---G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 321 HIDRN---GILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EECTT---SEEEEEETTTCCEEEEEES
T ss_pred EeCCC---cEEEEEECCCCCEEeeecc
Confidence 33322 2699999999999999864
No 17
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.35 E-value=8e-11 Score=126.02 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=118.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc-cccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS-KHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~-~ls~ 131 (859)
++.+++++.++.|+++|++||+++|+...+............++.+++ +. ++.|++||+ +|+++|++..... .. .
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~-~~~V~~~d~-~G~~~W~~~~~~~~~~-~ 80 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY-SKGAKMITR-DGRELWNIAAPAGCEM-Q 80 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC-BSEEEEECT-TSCEEEEEECCTTCEE-E
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC-CCCEEEECC-CCCEEEEEcCCCCccc-c
Confidence 556777788999999999999999999986521122221222334444 55 458999999 9999999997521 11 0
Q ss_pred CcccccccccccCCCeEEEE--e-CCEEEEEEcCCCcEEEEEeccCcc----eeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 132 PLLLVPTNLKVDKDSLILVS--S-KGCLHAVSSIDGEILWTRDFAAES----VEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~--~-~g~l~ald~~tG~~~W~~~~~~~~----~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
+.. ...++.+++. . +++++++|. +|+.+|++...... ..+..+. ...++.+++.....+ +|
T Consensus 81 ~~~-------~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~-~~~~G~~lv~~~~~~---~v 148 (276)
T 3no2_A 81 TAR-------ILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN-KNKKGNYLVPLFATS---EV 148 (276)
T ss_dssp EEE-------ECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE-ECTTSCEEEEETTTT---EE
T ss_pred ccE-------ECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce-ECCCCCEEEEecCCC---EE
Confidence 111 1225666664 3 679999996 99999999864321 0111121 134555555444333 69
Q ss_pred EEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCeeeEEEEe
Q 003001 205 YQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (859)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~ 264 (859)
.++|++ |+.+|+.... ......+.+..+++++ .+..++.+++++..+|++ +-++.
T Consensus 149 ~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v-~~~~~~~v~~~d~~tG~~-~w~~~ 203 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLV-ACGDAHCFVQLNLESNRI-VRRVN 203 (276)
T ss_dssp EEECTT-SCEEEEEECS--SCCCEEEECTTSCEEE-ECBTTSEEEEECTTTCCE-EEEEE
T ss_pred EEECCC-CCEEEEEECC--CCccceeEcCCCCEEE-EeCCCCeEEEEeCcCCcE-EEEec
Confidence 999998 9999999653 1122222222444554 344556788888887873 44443
No 18
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=99.35 E-value=6.2e-12 Score=138.32 Aligned_cols=162 Identities=11% Similarity=0.068 Sum_probs=103.1
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCc-cee--eeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVD--GIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-~i~--~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
++.||++|.+|.|+|||++||+++|+...+... .+. ......++.++++. ..+|.|+|+|+.+|..+|........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 568999999999999999999999999886110 111 01001244566654 35679999999999999988876433
Q ss_pred ccCCccccccccccc-------CCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcce------e-eeeEEEe---ecCCe
Q 003001 129 HSKPLLLVPTNLKVD-------KDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV------E-VQQVIQL---DESDQ 190 (859)
Q Consensus 129 ls~~~~~~~~~~~~~-------~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~------~-~~~~v~~---~~~~~ 190 (859)
. ..++...+.++. .++.||+. .+|+++|+|+.||+++|++....+.. + -.++.+. ..++.
T Consensus 90 ~--~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 90 S--TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp T--TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred e--ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 2 112221111122 36777774 69999999999999999998764321 0 0111110 23466
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeeec
Q 003001 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~ 222 (859)
+|+..... .+.+.+ .+|+ +|..+.+.
T Consensus 168 v~ig~~~y----~v~~~~-~sG~-~W~~~~s~ 193 (339)
T 2be1_A 168 IVIGKTIF----ELGIHS-YDGA-SYNVTYST 193 (339)
T ss_dssp EEEEEEEE----ECEECC-TTSC-CCCCEEEE
T ss_pred EEEecceE----EEEEEC-CCCC-eEEEeccc
Confidence 77644332 466666 7897 89987654
No 19
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.31 E-value=6e-13 Score=148.51 Aligned_cols=174 Identities=12% Similarity=0.162 Sum_probs=96.7
Q ss_pred ccccccccEeEEEeccCceeeeeeeeeccCCCEEEEE-eCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEE
Q 003001 23 LYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVS-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL 101 (859)
Q Consensus 23 l~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyva-t~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~V 101 (859)
.++.+.|+..|+.+. +.... .|...++.+|++ +.+|.|+|+|++||+.+|+.....+..+...+....++.+++
T Consensus 23 a~d~~tG~~~W~~~~-~~~~s----~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~ 97 (369)
T 2hz6_A 23 AVSKRTGSIKWTLKE-DPVLQ----VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYM 97 (369)
T ss_dssp EEETTTCCEEEEEEC-CCSCC----CC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCC
T ss_pred EEECCCCCEEEEecC-CCcee----cceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEE
Confidence 355679999999987 54332 333345655555 789999999999999999976643321212211225567776
Q ss_pred EcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeee
Q 003001 102 SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQ 180 (859)
Q Consensus 102 s~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 180 (859)
++.++.|+|||+.||+++|+........ .. + + ++.+++. .+|.|+++|+++|+++|+++.....
T Consensus 98 g~~dg~v~a~D~~tG~~~w~~~~~~~~~-----~~----p-~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~---- 162 (369)
T 2hz6_A 98 GKKQDIWYVIDLLTGEKQQTLSSAFADS-----LS----P-S-TSLLYLGRTEYTITMYDTKTRELRWNATYFDYA---- 162 (369)
T ss_dssp CEEEEEEEEECCC---------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEEC----
T ss_pred EeCCCEEEEEECCCCcEEEEecCCCccc-----cc----c-c-CCEEEEEecCCEEEEEECCCCCEEEeEeccccc----
Confidence 6656789999999999999988654211 11 1 2 4566664 5899999999999999998753211
Q ss_pred eEEEeecC-----CeEEEEEecCCceeEEEEEEcCCCceeeeeeeec
Q 003001 181 QVIQLDES-----DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222 (859)
Q Consensus 181 ~~v~~~~~-----~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~ 222 (859)
.. ...+ +.+|+.+.+| .++++|+.+|+.+|+.....
T Consensus 163 ~~--~~~~~~~~~~~v~~~~~dg----~v~a~d~~tG~~~W~~~~~~ 203 (369)
T 2hz6_A 163 AS--LPEDDVDYKMSHFVSNGDG----LVVTVDSESGDVLWIQNYAS 203 (369)
T ss_dssp CB--CCCCCTTCCCCEEEEETSC----EEEEECTTTCCEEEEEECSS
T ss_pred Cc--cccCCccccceEEEECCCC----EEEEEECCCCcEEEEecCCC
Confidence 11 1122 6788765555 59999999999999997543
No 20
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.05 E-value=3.3e-07 Score=98.73 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=136.9
Q ss_pred EeEEEeccCceeeeeeeeeccCCCEEEEEeC-------CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCE-EEEEE
Q 003001 31 MDWHQQYIGKVKHAVFHTQKTGRKRVVVSTE-------ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKY-VITLS 102 (859)
Q Consensus 31 ~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~-------~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~-~V~Vs 102 (859)
..++...-+.+....|. .+++++|+++. ++.|..+|+++|+++|+...... ..++....++. +++..
T Consensus 33 ~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 33 EMLRKAVGKGAYEMAYS---QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK--PFGATINNTTQTLWFGN 107 (353)
T ss_dssp CEEEEEEESSEEEEEEE---TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC--CCSEEEETTTTEEEEEE
T ss_pred hhhhhhhccCccceEEC---CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC--cceEEECCCCCEEEEEe
Confidence 34555554445444344 35678999884 56899999999999999987544 22332223334 44444
Q ss_pred cCCCeEEEEeCCCCcEeEEEeccCcccc-CCcccccccccccCC-CeEEEEe---CCEEEEEEcCCCcEEEEEeccCcce
Q 003001 103 SDGSTLRAWNLPDGQMVWESFLRGSKHS-KPLLLVPTNLKVDKD-SLILVSS---KGCLHAVSSIDGEILWTRDFAAESV 177 (859)
Q Consensus 103 ~~g~~v~Ald~~tG~llW~~~~~~~~ls-~~~~~~~~~~~~~~~-~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~~~ 177 (859)
..++.|+.||..+|+++|.......... ...+..+.......+ +.+++.. ++.++.+|..+|+..+........
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~- 186 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM- 186 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT-
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc-
Confidence 5567999999999999999987542210 000000000122223 4566643 789999999999999998733221
Q ss_pred eeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccC--ceEEe-cCcEEEEEECCCCeEEEEEee
Q 003001 178 EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG--DVALV-SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 178 ~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~--~~~~v-~~~~lv~~d~~~~~l~v~~L~ 254 (859)
+..+..+..++.+|+....+ .+..+|+.+|+..+............ .+.+- .++.+++.+...+.+++.++.
T Consensus 187 -~~~~~~s~dg~~l~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 187 -STGLALDSEGKRLYTTNADG----ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp -CCCCEEETTTTEEEEECTTS----EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred -cceEEECCCCCEEEEEcCCC----eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 22232234566777755433 58889999999998876532211111 12222 355666777667899999998
Q ss_pred cCeeeEEEEee
Q 003001 255 NRKIAFQETHL 265 (859)
Q Consensus 255 sg~~~~~~~~l 265 (859)
+++. .+.+++
T Consensus 262 ~~~~-~~~~~~ 271 (353)
T 3vgz_A 262 NGNI-LAKVAA 271 (353)
T ss_dssp TCCE-EEEEEC
T ss_pred CCcE-EEEEEc
Confidence 8872 444443
No 21
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=99.04 E-value=3.9e-10 Score=123.94 Aligned_cols=192 Identities=8% Similarity=-0.004 Sum_probs=111.5
Q ss_pred ccccccEeEEEeccC-ceeeeeeeeec-cCCCEEEEE--eCCCEEEEEECCCCccceEEEcCCCcceeee----eeee--
Q 003001 25 EDQVGLMDWHQQYIG-KVKHAVFHTQK-TGRKRVVVS--TEENVIASLDLRHGEIFWRHVLGINDVVDGI----DIAL-- 94 (859)
Q Consensus 25 edq~G~~dW~~~~vG-~~~~~~f~~~~-~~~~~Vyva--t~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l----~~~~-- 94 (859)
+.+.|+..|+.+.-. .+... ...+. ..++.+|+. +.+|.|+|||+++|...|+..++.......+ .+..
T Consensus 26 d~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~ 104 (339)
T 2be1_A 26 DRRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVND 104 (339)
T ss_dssp ETTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC-----
T ss_pred ECCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeec
Confidence 346899999998630 12111 01111 135567766 6899999999999999998887533111111 0123
Q ss_pred -----cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc--cCCcccccccccc---cCCCeEEEE-eCCEEEEEEcCC
Q 003001 95 -----GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH--SKPLLLVPTNLKV---DKDSLILVS-SKGCLHAVSSID 163 (859)
Q Consensus 95 -----~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l--s~~~~~~~~~~~~---~~~~~VvV~-~~g~l~ald~~t 163 (859)
.++.|++++.+++++|+|+.||+++|++....+.- ......++..... +.++.|++. .+..+++++ .+
T Consensus 105 ~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~s 183 (339)
T 2be1_A 105 SGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YD 183 (339)
T ss_dssp -----CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TT
T ss_pred ccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CC
Confidence 78889888877899999999999999999765321 0001111100000 223556664 466777777 78
Q ss_pred CcEEEEEeccCcc-eeeee-EE---EeecCCeEEEEEecCCceeEEEEEEcCCCceee-eeeeecc
Q 003001 164 GEILWTRDFAAES-VEVQQ-VI---QLDESDQIYVVGYAGSSQFHAYQINAMNGELLN-HETAAFS 223 (859)
Q Consensus 164 G~~~W~~~~~~~~-~~~~~-~v---~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w-~~~v~~~ 223 (859)
|+ +|..+...-. ..... +. ....++.+|+...+| +++|+|..+|+.+| +.++..|
T Consensus 184 G~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg----~v~A~d~~~G~~~W~~~~l~sP 244 (339)
T 2be1_A 184 GA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDK----SLLASDLDFRIARWVSPTFPGI 244 (339)
T ss_dssp SC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTT----EEEEECSTTCCEEEECCCCSSC
T ss_pred CC-eEEEecccccccccccccccccccccCCcEEEECCCC----EEEEEECCCCcEEEEeecCCCC
Confidence 97 8987543110 00000 00 001235556544444 69999999999999 7754333
No 22
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.98 E-value=1.4e-08 Score=108.95 Aligned_cols=180 Identities=19% Similarity=0.188 Sum_probs=111.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
.++.||+++.+|.|+++|++ |+.+|+...+... +..+ ....++.+++++.++.|+++|+. |+++|+........
T Consensus 106 ~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~-~~~~-~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~-- 179 (330)
T 3hxj_A 106 FEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAI-YATP-IVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT-- 179 (330)
T ss_dssp ETTEEEEECTTSEEEEECTT-SCEEEEEECSSCC-CSCC-EECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCC--
T ss_pred ECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCce-eeee-EEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCce--
Confidence 37788999888889999988 9999988865441 1122 22335556667665689999988 99999888654432
Q ss_pred CcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 132 PLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
..+ ..+.++.+++.. +.|+++| .+|+.+|+........ ..+. ...++.+|+.+..+ .++++| .+
T Consensus 180 ~~~------~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~--~~~~-~~~~g~l~v~t~~~----gl~~~~-~~ 243 (330)
T 3hxj_A 180 SAA------SIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTV--TRPA-ISEDGTIYVTSLDG----HLYAIN-PD 243 (330)
T ss_dssp SCC------EECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCC--SCCE-ECTTSCEEEEETTT----EEEEEC-TT
T ss_pred eee------EEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcce--eceE-ECCCCeEEEEcCCC----eEEEEC-CC
Confidence 111 233356777766 8889999 8889999887653221 1121 13456888766544 388887 47
Q ss_pred CceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 212 GELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 212 G~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+.+|+.... ......+++..++.+++.+ ..+.++.++. +|+
T Consensus 244 g~~~~~~~~~--~~~~~~~~~~~~g~l~v~t-~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 244 GTEKWRFKTG--KRIESSPVIGNTDTIYFGS-YDGHLYAINP-DGT 285 (330)
T ss_dssp SCEEEEEECS--SCCCSCCEECTTSCEEEEC-TTCEEEEECT-TSC
T ss_pred CCEeEEeeCC--CCccccceEcCCCeEEEec-CCCCEEEECC-CCc
Confidence 8888887532 2222223332233333332 3456777764 444
No 23
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.91 E-value=6.8e-08 Score=103.61 Aligned_cols=170 Identities=21% Similarity=0.302 Sum_probs=117.5
Q ss_pred ccccccccEeEEEeccCceeeeeeeeeccC-CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEE
Q 003001 23 LYEDQVGLMDWHQQYIGKVKHAVFHTQKTG-RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL 101 (859)
Q Consensus 23 l~edq~G~~dW~~~~vG~~~~~~f~~~~~~-~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~V 101 (859)
.|+.+ |+..|+...-+.. ...+..+ ++.+|+++.++.|+++|++ |+.+|+..++... +..+ ....++.+++
T Consensus 121 ~~d~~-g~~~~~~~~~~~~----~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~-~~~~-~~d~~g~l~v 192 (330)
T 3hxj_A 121 AINTD-GTEKWRFKTKKAI----YATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAI-TSAA-SIGKDGTIYF 192 (330)
T ss_dssp EECTT-SCEEEEEECSSCC----CSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCC-CSCC-EECTTCCEEE
T ss_pred EEcCC-CCEEEEEcCCCce----eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCc-eeee-EEcCCCEEEE
Confidence 34445 8888988752221 1122223 7789999999999999999 9999999876542 2222 2334666777
Q ss_pred EcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe-CCEEEEEEcCCCcEEEEEeccCcceeee
Q 003001 102 SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQ 180 (859)
Q Consensus 102 s~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~ 180 (859)
++ +.|+++| .+|+.+|+........ .. + ..+.++.+++.+ ++.|+++| .+|+.+|++....... .
T Consensus 193 ~t--~~l~~~d-~~g~~~~~~~~~~~~~-~~-~------~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~--~ 258 (330)
T 3hxj_A 193 GS--DKVYAIN-PDGTEKWNFYAGYWTV-TR-P------AISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIE--S 258 (330)
T ss_dssp ES--SSEEEEC-TTSCEEEEECCSSCCC-SC-C------EECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCCC--S
T ss_pred Ee--CEEEEEC-CCCcEEEEEccCCcce-ec-e------EECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCcc--c
Confidence 77 4799999 8999999998754332 11 1 234456888875 79999998 6899999998654322 1
Q ss_pred eEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003001 181 QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 181 ~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v 220 (859)
.++ ...++.+|+.+..|+ ++++|+ +|+.+|....
T Consensus 259 ~~~-~~~~g~l~v~t~~gg----l~~~d~-~g~~~~~~~~ 292 (330)
T 3hxj_A 259 SPV-IGNTDTIYFGSYDGH----LYAINP-DGTEKWNFET 292 (330)
T ss_dssp CCE-ECTTSCEEEECTTCE----EEEECT-TSCEEEEEEC
T ss_pred cce-EcCCCeEEEecCCCC----EEEECC-CCcEEEEEEc
Confidence 121 134788998666553 999997 8999999864
No 24
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.81 E-value=3.3e-06 Score=90.80 Aligned_cols=192 Identities=13% Similarity=0.130 Sum_probs=125.7
Q ss_pred CCCEEEEEeC-CCEEEEEECCCCccceEEEcCCCcc--------eeeeeeeecCEEEEEEc--CCCeEEEEeCCCCcEeE
Q 003001 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDV--------VDGIDIALGKYVITLSS--DGSTLRAWNLPDGQMVW 120 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~~--------i~~l~~~~~~~~V~Vs~--~g~~v~Ald~~tG~llW 120 (859)
+++.+|+++. ++.|..+|+++|+++|+..++.... ...+....+++.++++. .++.|+.||..+|+..+
T Consensus 99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~ 178 (353)
T 3vgz_A 99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT 178 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE
T ss_pred CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE
Confidence 4566888766 5899999999999999998854311 12232222344455543 35789999999999999
Q ss_pred EEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCc--ceeeeeEEEeecCCeEEEEEec
Q 003001 121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE--SVEVQQVIQLDESDQIYVVGYA 197 (859)
Q Consensus 121 ~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~--~~~~~~~v~~~~~~~vyvv~~~ 197 (859)
......... ....+-+ + ++.+++. .++.++.+|..+|+..|....... ...+..+.....++.+|+.+..
T Consensus 179 ~~~~~~~~~-~~~~~s~-----d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 179 AIQNTGKMS-TGLALDS-----E-GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp EECCCCTTC-CCCEEET-----T-TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred EecCCCCcc-ceEEECC-----C-CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 987332211 1111111 2 3456665 489999999999999999877422 1123333333456678876644
Q ss_pred CCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 198 GSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 198 g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
++ .+..+|+.+|+.++......+. .+.+- .++.+++.+...+.+.+.++.+++
T Consensus 252 ~~---~v~~~d~~~~~~~~~~~~~~~~----~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 252 AA---EVLVVDTRNGNILAKVAAPESL----AVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp SS---EEEEEETTTCCEEEEEECSSCC----CEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred CC---EEEEEECCCCcEEEEEEcCCCc----eEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 33 5899999999999887653331 22222 345566677667889999988877
No 25
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.61 E-value=7.4e-06 Score=89.06 Aligned_cols=172 Identities=9% Similarity=-0.044 Sum_probs=113.4
Q ss_pred cccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEe-CCCEEEEEECCCCccceEEEcCCCc----ceeeeeeeecC
Q 003001 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVST-EENVIASLDLRHGEIFWRHVLGIND----VVDGIDIALGK 96 (859)
Q Consensus 22 Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~~----~i~~l~~~~~~ 96 (859)
.+++.+.++..++....+.|..-.+. .++++|+++ ..+.|..+|+++|++.++..++... ...++. . .+
T Consensus 67 ~viD~~t~~~~~~i~~~~~p~~i~~~----~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~-~-~~ 140 (328)
T 3dsm_A 67 FAIDINTFKEVGRITGFTSPRYIHFL----SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMV-Q-YG 140 (328)
T ss_dssp EEEETTTCCEEEEEECCSSEEEEEEE----ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEE-E-ET
T ss_pred EEEECcccEEEEEcCCCCCCcEEEEe----CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEE-E-EC
Confidence 34455566666655433344333332 256999999 7899999999999999998876510 122442 2 44
Q ss_pred EEEEEEc--CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe--C----------CEEEEEEcC
Q 003001 97 YVITLSS--DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K----------GCLHAVSSI 162 (859)
Q Consensus 97 ~~V~Vs~--~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~----------g~l~ald~~ 162 (859)
+.++|+. .++.|..+|+.+|+++++........ . + ..+.++.+++.. + +.|+.+|.+
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~--~--i-----~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT--S--L-----VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC--C--C-----EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred CEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc--c--e-----EEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 4555554 36799999999999999987643221 1 1 233467777753 3 689999999
Q ss_pred CCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCcee
Q 003001 163 DGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (859)
Q Consensus 163 tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~ 215 (859)
+|++..+...+.+. .+..+.....++.+|+.. + .++.+|+.+|+..
T Consensus 212 t~~v~~~~~~~~g~-~p~~la~~~d~~~lyv~~--~----~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 212 TFTVEKQFKFKLGD-WPSEVQLNGTRDTLYWIN--N----DIWRMPVEADRVP 257 (328)
T ss_dssp TTEEEEEEECCTTC-CCEEEEECTTSCEEEEES--S----SEEEEETTCSSCC
T ss_pred CCeEEEEEecCCCC-CceeEEEecCCCEEEEEc--c----EEEEEECCCCcee
Confidence 99998887765332 244443233467788643 2 3889999999874
No 26
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.42 E-value=2.4e-05 Score=84.93 Aligned_cols=190 Identities=8% Similarity=0.014 Sum_probs=120.6
Q ss_pred CCCEEEEEeC-CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
+++++|+++. .|.|..+|++||+++++...... ..++....++ .++++. .++.|..||+.+|++.++.......-
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~--p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~ 128 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS--PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDM 128 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSS--EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCC--CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccc
Confidence 4788998876 58999999999999998853222 2344222344 666665 56799999999999999988754110
Q ss_pred cCCcccccccccccCCCeEEEEe---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCc------
Q 003001 130 SKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS------ 200 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~------ 200 (859)
.. ..+.....+ ++.++|.. ++.|..+|.++|++.++...... +..+. ...++.+|+++.....
T Consensus 129 -~~--~~p~~i~~~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~---p~~i~-~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 129 -ES--GSTEQMVQY-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ---PTSLV-MDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp -TT--CBCCCEEEE-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC---BCCCE-ECTTSEEEEEBCCBCTTCSSCB
T ss_pred -cC--CCcceEEEE-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC---ccceE-EcCCCCEEEEECCCccCCcccc
Confidence 00 000011223 67888863 78999999999999998876432 22332 2356788876543200
Q ss_pred -eeEEEEEEcCCCceeeeeeeecccCccCceEEec--CcEEEEEECCCCeEEEEEeecCe
Q 003001 201 -QFHAYQINAMNGELLNHETAAFSGGFVGDVALVS--SDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 201 -~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~--~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
...+..+|+.+|+......+.. +-....+.++ ++.+++.+. .++++++.+++
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~ 255 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN---DIWRMPVEADR 255 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS---SEEEEETTCSS
T ss_pred CCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc---EEEEEECCCCc
Confidence 1369999999999886654321 1111122222 455556643 67788877766
No 27
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.38 E-value=0.00037 Score=76.08 Aligned_cols=213 Identities=10% Similarity=0.123 Sum_probs=131.7
Q ss_pred cccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEe-CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEE-
Q 003001 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVI- 99 (859)
Q Consensus 22 Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V- 99 (859)
-+++-+.|+..+....-+.+....|. .+++.+|+++ .++.|..+|.++|+.+++...... +..+....++..+
T Consensus 15 ~v~d~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--v~~~~~spdg~~l~ 89 (391)
T 1l0q_A 15 SVIDVTSNKVTATIPVGSNPMGAVIS---PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS--PQGVAVSPDGKQVY 89 (391)
T ss_dssp EEEETTTTEEEEEEECSSSEEEEEEC---TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEE
T ss_pred EEEECCCCeEEEEeecCCCcceEEEC---CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC--ccceEECCCCCEEE
Confidence 45555566666655443333333333 3456676554 789999999999999998877653 4334222233444
Q ss_pred EEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCC-eEEEE--eCCEEEEEEcCCCcEEEEEeccCcc
Q 003001 100 TLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVS--SKGCLHAVSSIDGEILWTRDFAAES 176 (859)
Q Consensus 100 ~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~ 176 (859)
+.+..++.|+.||..+|+.++......... .. ....++ .+++. .++.++.+|..+|+..+.......
T Consensus 90 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~-------~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 159 (391)
T 1l0q_A 90 VTNMASSTLSVIDTTSNTVAGTVKTGKSPL--GL-------ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS- 159 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEE--EE-------EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-
T ss_pred EEECCCCEEEEEECCCCeEEEEEeCCCCcc--eE-------EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC-
Confidence 444456799999999999999887654321 11 112234 45454 389999999999999988876432
Q ss_pred eeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEEC--CCCeEEEEEe
Q 003001 177 VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDT--TRSILVTVSF 253 (859)
Q Consensus 177 ~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~--~~~~l~v~~L 253 (859)
+..+.....+..+|+.+..++ .+..+|+.+|+....... ..... .+.+- .+..+++.+. ..+.+++.++
T Consensus 160 --~~~~~~~~dg~~l~~~~~~~~---~v~~~d~~~~~~~~~~~~--~~~~~-~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 160 --PKGIAVTPDGTKVYVANFDSM---SISVIDTVTNSVIDTVKV--EAAPS-GIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp --EEEEEECTTSSEEEEEETTTT---EEEEEETTTTEEEEEEEC--SSEEE-EEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred --cceEEECCCCCEEEEEeCCCC---EEEEEECCCCeEEEEEec--CCCcc-ceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 223322334556776554443 588899999987765532 11111 11121 3345555543 4578999999
Q ss_pred ecCe
Q 003001 254 KNRK 257 (859)
Q Consensus 254 ~sg~ 257 (859)
.+++
T Consensus 232 ~~~~ 235 (391)
T 1l0q_A 232 GTNK 235 (391)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 8876
No 28
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.38 E-value=0.00071 Score=73.80 Aligned_cols=183 Identities=10% Similarity=0.145 Sum_probs=117.8
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEE-EEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcc
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVI-TLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V-~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~ 134 (859)
+++++.+|.|..+|.++|+.+++...... +..+....++..+ +.++.++.|+.||..+|++++......... ...
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~--~~~ 80 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ--GVA 80 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE--EEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEeecCCC--cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc--ceE
Confidence 44456789999999999999998876544 3333222334444 444456799999999999999988765332 111
Q ss_pred cccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCC
Q 003001 135 LVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (859)
Q Consensus 135 ~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG 212 (859)
+.+ + +..+++.. ++.|+.+|..+|+.++....... +..+.....+..+|+.+...+ .+..+|+.+|
T Consensus 81 ~sp-----d-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~---~v~~~d~~~~ 148 (391)
T 1l0q_A 81 VSP-----D-GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---PLGLALSPDGKKLYVTNNGDK---TVSVINTVTK 148 (391)
T ss_dssp ECT-----T-SSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEETTTT---EEEEEETTTT
T ss_pred ECC-----C-CCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC---cceEEECCCCCEEEEEeCCCC---EEEEEECCCC
Confidence 111 1 23455543 69999999999999988775432 223332334556766554333 5888999999
Q ss_pred ceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 213 ELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 213 ~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+.++..... .... .+.+- .+..+++.....+.+++.++.+++
T Consensus 149 ~~~~~~~~~--~~~~-~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 149 AVINTVSVG--RSPK-GIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp EEEEEEECC--SSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cEEEEEecC--CCcc-eEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 988776432 1111 12121 334554555566889999998876
No 29
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.35 E-value=0.0013 Score=76.66 Aligned_cols=190 Identities=13% Similarity=0.035 Sum_probs=117.0
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeC--CCCcEeEEEeccCccc
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNL--PDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~--~tG~llW~~~~~~~~l 129 (859)
++++|++. .+|.|..+|..+|+++.+...... ..++....++..+++++.++.|+.||. .+|+.+-+........
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~ 225 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR 225 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc
Confidence 45666654 578999999999999988876543 333322335556666666689999999 8999988777533221
Q ss_pred cCCcccccccccccC-----CCeEEEE--eCCEEEEEEcCCCcEEEEEeccCc---------ceeeeeEEEeecCCeEEE
Q 003001 130 SKPLLLVPTNLKVDK-----DSLILVS--SKGCLHAVSSIDGEILWTRDFAAE---------SVEVQQVIQLDESDQIYV 193 (859)
Q Consensus 130 s~~~~~~~~~~~~~~-----~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~---------~~~~~~~v~~~~~~~vyv 193 (859)
.+ .... ++.+++. .++.+..+|..+++++.+...... ...+..+..+..+..+|+
T Consensus 226 -----~v----a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 226 -----SV----ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp -----EE----EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred -----eE----EeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 11 1222 3466664 489999999999999988865321 101233332233445554
Q ss_pred EEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 194 VGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 194 v~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+..+. .++..+|..+++.+....+.....+. ...+- .+.++++.....+.+.+.++.+++
T Consensus 297 -s~~~~--g~i~vvd~~~~~~l~~~~i~~~~~~~-~~~~spdg~~l~va~~~~~~v~v~D~~tg~ 357 (543)
T 1nir_A 297 -NVKET--GKVLLVNYKDIDNLTVTSIGAAPFLH-DGGWDSSHRYFMTAANNSNKVAVIDSKDRR 357 (543)
T ss_dssp -EETTT--TEEEEEECTTSSSCEEEEEECCSSCC-CEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred -EECCC--CeEEEEEecCCCcceeEEeccCcCcc-CceECCCCCEEEEEecCCCeEEEEECCCCe
Confidence 44432 26888899888766533333222221 12222 334455555455789999999887
No 30
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.30 E-value=0.0011 Score=73.30 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=103.6
Q ss_pred EEEEEECCCC--ccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCccccccccc
Q 003001 64 VIASLDLRHG--EIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLK 141 (859)
Q Consensus 64 ~l~ALd~~tG--~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~ 141 (859)
.|+.+|+++| +.+.+...... ...+....++.+++.++.++.|+.||..+|+............ ....+.. ..
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-~~~~v~~--~~ 176 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQ--PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKK-KLGFVET--IS 176 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSC--BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHT-TCCEEEE--EE
T ss_pred EEEEECCCCCcceEEEEEcCCCC--ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccc-cCCceeE--EE
Confidence 7888888877 44444443332 2222112245555555566789999999999986443211000 0000110 01
Q ss_pred ccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 142 VDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 142 ~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
...++.+++. .++.+..+|..+|+..++....... +..+.....+..+|+.+..++ .+..+|+.+|+.++...
T Consensus 177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW--SKILLYDPIRDLVYCSNWISE---DISVIDRKTKLEIRKTD 251 (433)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS--EEEEEEETTTTEEEEEETTTT---EEEEEETTTTEEEEECC
T ss_pred EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC--eeEEEEcCCCCEEEEEecCCC---cEEEEECCCCcEEEEec
Confidence 2225666665 3899999999999999988743322 223332345666777664433 58889999999887664
Q ss_pred eecccCccCceEEe-cCcEEEEEEC-------CCCeEEEEEeecCe
Q 003001 220 AAFSGGFVGDVALV-SSDTLVTLDT-------TRSILVTVSFKNRK 257 (859)
Q Consensus 220 v~~~~~~s~~~~~v-~~~~lv~~d~-------~~~~l~v~~L~sg~ 257 (859)
.. ..+.. +.+- .+..+++... ..+.+++.++.+++
T Consensus 252 ~~--~~~~~-~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 252 KI--GLPRG-LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK 294 (433)
T ss_dssp CC--SEEEE-EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred CC--CCceE-EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc
Confidence 31 11111 1111 3335555442 24678888888876
No 31
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.25 E-value=0.0024 Score=71.37 Aligned_cols=182 Identities=12% Similarity=0.088 Sum_probs=119.2
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|...|..+|+.+++..-.. ..+..+ ...+..++.++.++.|+.||..+|+.+..........
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v-- 202 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-GGVWSS--QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV-- 202 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCCS-SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--
T ss_pred cCCEEEEEECCCcEEEEECCCCcEEEEEcCCC-CCEEEE--EecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcE--
Confidence 47789999999999999999999887754222 233333 2234455546666799999999999998887554332
Q ss_pred CcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
..+ ..+ ++.++.. .||.+...|..+|+..+......... ..+ ...++.++..+.+| .+..+|+.
T Consensus 203 --~~~----~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v--~~~--~~~~~~l~~~~~dg----~i~iwd~~ 267 (445)
T 2ovr_B 203 --RCM----HLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCV--QYDGRRVVSGAYDF----MVKVWDPE 267 (445)
T ss_dssp --EEE----EEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE--EEE--EECSSCEEEEETTS----CEEEEEGG
T ss_pred --EEE----Eec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccE--EEE--EECCCEEEEEcCCC----EEEEEECC
Confidence 111 122 3444444 49999999999999999886544332 122 12455555544444 38888999
Q ss_pred CCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 211 NGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|+.+.+..... ..+ .++...+..+++... .+.+++.++.+++
T Consensus 268 ~~~~~~~~~~~~-~~v--~~~~~~~~~l~~~~~-d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 268 TETCLHTLQGHT-NRV--YSLQFDGIHVVSGSL-DTSIRVWDVETGN 310 (445)
T ss_dssp GTEEEEEECCCS-SCE--EEEEECSSEEEEEET-TSCEEEEETTTCC
T ss_pred CCcEeEEecCCC-Cce--EEEEECCCEEEEEeC-CCeEEEEECCCCC
Confidence 999887764211 111 122225566666664 5889999998877
No 32
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.22 E-value=0.00036 Score=73.83 Aligned_cols=138 Identities=10% Similarity=0.069 Sum_probs=86.8
Q ss_pred cccccccccEeEEEeccC---ceeeeeeeeeccCCCEEEEEeC-CCEEEEEECCCCccceEEEcCCCc----ceeeeeee
Q 003001 22 SLYEDQVGLMDWHQQYIG---KVKHAVFHTQKTGRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIND----VVDGIDIA 93 (859)
Q Consensus 22 Al~edq~G~~dW~~~~vG---~~~~~~f~~~~~~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~----~i~~l~~~ 93 (859)
.+++-+.|+..+....-+ .+....|. .+++.+|++.. .+.|..+|+.+|+++++..++... ....+...
T Consensus 14 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s 90 (337)
T 1pby_B 14 VVIDTEKMAVDKVITIADAGPTPMVPMVA---PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp EEEETTTTEEEEEEECTTCTTCCCCEEEC---TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred EEEECCCCcEEEEEEcCCCCCCccceEEc---CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC
Confidence 455666677777665433 34433333 34557777654 689999999999999998875411 12233222
Q ss_pred ecCEEEEEEc------------CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCe-EEEEeCCEEEEEE
Q 003001 94 LGKYVITLSS------------DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSL-ILVSSKGCLHAVS 160 (859)
Q Consensus 94 ~~~~~V~Vs~------------~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~-VvV~~~g~l~ald 160 (859)
.++..++++. .++.|+.||..+|+.++......... ...+ ..++. +++. ++.++.+|
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~-------s~dg~~l~~~-~~~i~~~d 160 (337)
T 1pby_B 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT--MLAW-------ARDGSKLYGL-GRDLHVMD 160 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC--CEEE-------CTTSSCEEEE-SSSEEEEE
T ss_pred CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcc--eeEE-------CCCCCEEEEe-CCeEEEEE
Confidence 2343555443 24699999999999999887643321 1111 22444 4444 78899999
Q ss_pred cCCCcEEEEEec
Q 003001 161 SIDGEILWTRDF 172 (859)
Q Consensus 161 ~~tG~~~W~~~~ 172 (859)
..+|++......
T Consensus 161 ~~~~~~~~~~~~ 172 (337)
T 1pby_B 161 PEAGTLVEDKPI 172 (337)
T ss_dssp TTTTEEEEEECS
T ss_pred CCCCcEeeeeec
Confidence 999988776654
No 33
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.21 E-value=0.00034 Score=74.16 Aligned_cols=188 Identities=10% Similarity=0.037 Sum_probs=122.1
Q ss_pred CCEEEEEeC---CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc-Ccc
Q 003001 53 RKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR-GSK 128 (859)
Q Consensus 53 ~~~Vyvat~---~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~-~~~ 128 (859)
++++|+++. .+.|..+|++||+++=+..++...-..++ ...++.+++.+..++.+..+|+++++++-+.... .+.
T Consensus 31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi-~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g 109 (266)
T 2iwa_A 31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGL-TLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG 109 (266)
T ss_dssp TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEE-EEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC
T ss_pred CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEE-EEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe
Confidence 379999985 58999999999999999888654212244 2345545454555689999999999999998765 322
Q ss_pred ccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcce---eeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV---EVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~---~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
. .+ ..+ ++.+++. .+++|+.+|.++.++.=+........ .+..+. ..++.+|+.....+ .+
T Consensus 110 ~----gl-----t~D-g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele--~~dg~lyvn~~~~~---~V 174 (266)
T 2iwa_A 110 W----GL-----ATD-GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE--YINGEVWANIWQTD---CI 174 (266)
T ss_dssp C----EE-----EEC-SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--EETTEEEEEETTSS---EE
T ss_pred E----EE-----EEC-CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE--EECCEEEEecCCCC---eE
Confidence 1 12 123 4567775 47899999999999887776542111 122232 23678997654443 69
Q ss_pred EEEEcCCCceeeeeeeecc--c-----Ccc----CceEEe-cCcEEEEEECCCCeEEEEEeecC
Q 003001 205 YQINAMNGELLNHETAAFS--G-----GFV----GDVALV-SSDTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~--~-----~~s----~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg 256 (859)
..+|+++|+++-...+... . ... ..+.+- +++.+.+.....+.++++++...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999877765411 0 000 112222 33455566666677777777653
No 34
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.17 E-value=0.0014 Score=69.31 Aligned_cols=154 Identities=8% Similarity=0.052 Sum_probs=98.9
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecC-EEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc-c
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGK-YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH-S 130 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-~i~~l~~~~~~-~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l-s 130 (859)
+.+++++.++.|..+|+.+|+++++..++... ....+....++ .+++.+..++.|+.||..+|+.+++.....+.. .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 35778888999999999999999998876521 12233222233 344445556799999999999999887643100 0
Q ss_pred CCcccccccccccCCC-eEEEE-------------eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEe
Q 003001 131 KPLLLVPTNLKVDKDS-LILVS-------------SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGY 196 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~VvV~-------------~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~ 196 (859)
.....+ ....++ .+++. .++.+..+|..+|+..+....... +..+..+..+..+|+.
T Consensus 82 ~~~~~~----~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 82 KSLFGA----ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---ITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp ECTTCE----EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---CCCEEECTTSSCEEEE--
T ss_pred ccccce----EECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC---cceeEECCCCCEEEEe--
Confidence 000011 222244 56665 259999999999999998876432 2223223345557764
Q ss_pred cCCceeEEEEEEcCCCceeeeeee
Q 003001 197 AGSSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~w~~~v 220 (859)
.+ .+..+|+.+|+.......
T Consensus 153 ~~----~i~~~d~~~~~~~~~~~~ 172 (337)
T 1pby_B 153 GR----DLHVMDPEAGTLVEDKPI 172 (337)
T ss_dssp SS----SEEEEETTTTEEEEEECS
T ss_pred CC----eEEEEECCCCcEeeeeec
Confidence 33 388899999998866543
No 35
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.10 E-value=0.0047 Score=68.21 Aligned_cols=191 Identities=12% Similarity=0.119 Sum_probs=116.1
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEEEcCC----CcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGI----NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~----~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~ 127 (859)
++.+++++ .++.|..+|..+|+.+....... ...+..+....++.+++.++.++.|+.||..+|+.+++......
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~ 212 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK 212 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence 55666654 56789999999999885432211 11222332223455555555667999999999999999875432
Q ss_pred cccCCcccccccccccCC-CeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC----c
Q 003001 128 KHSKPLLLVPTNLKVDKD-SLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS----S 200 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~~-~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~----~ 200 (859)
.. ..+ ....+ +.+++.. ++.+..+|..+|+..+....... +..+.....+..+++.+..++ .
T Consensus 213 ~~----~~~----~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 213 WS----KIL----LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL---PRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp SE----EEE----EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE---EEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred Ce----eEE----EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC---ceEEEEcCCCCEEEEEECCCCccccC
Confidence 21 111 11223 4555543 89999999999999888765432 333332334556776654321 1
Q ss_pred eeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 201 QFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 201 ~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
...+..+|+.+|+.++.... +..... +.+- .++.+++.....+.+++.++.+++
T Consensus 282 dg~i~~~d~~~~~~~~~~~~--~~~~~~-~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTIGP--PGNKRH-IVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp CEEEEEEETTTTEEEEEEEE--EECEEE-EEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEECCCCcEEeeccC--CCCcce-EEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 34688999999988776532 111111 2221 333555665667889999998876
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.0038 Score=67.97 Aligned_cols=189 Identities=12% Similarity=0.150 Sum_probs=108.0
Q ss_pred CCC-EEEEEeCCCEEEEEEC----CCCccceEEEcC----C-----------CcceeeeeeeecCEEEEEEcCCCeEEEE
Q 003001 52 GRK-RVVVSTEENVIASLDL----RHGEIFWRHVLG----I-----------NDVVDGIDIALGKYVITLSSDGSTLRAW 111 (859)
Q Consensus 52 ~~~-~Vyvat~~g~l~ALd~----~tG~ilWR~~l~----~-----------~~~i~~l~~~~~~~~V~Vs~~g~~v~Al 111 (859)
++. .+++++.+|.|.-.|. .+|+.+|+.... . ...+..+....++..++.++.++.|+.|
T Consensus 56 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 135 (425)
T 1r5m_A 56 LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLW 135 (425)
T ss_dssp SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 455 7999999999999999 999987765421 1 1123233222234455556666799999
Q ss_pred eCCCCcEeEEEeccCccccCCcccccccccccCCCe-EEEE-eCCEEEEEEcCCCcEEEEEeccCccee-----------
Q 003001 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSL-ILVS-SKGCLHAVSSIDGEILWTRDFAAESVE----------- 178 (859)
Q Consensus 112 d~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~-VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~----------- 178 (859)
| .+|+.++......... ..... ..++. ++.. .+|.+...|..+|+.............
T Consensus 136 ~-~~~~~~~~~~~~~~~v-~~~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (425)
T 1r5m_A 136 N-KTGALLNVLNFHRAPI-VSVKW-------NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG 206 (425)
T ss_dssp E-TTSCEEEEECCCCSCE-EEEEE-------CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred e-CCCCeeeeccCCCccE-EEEEE-------CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence 9 7899999887554332 11111 12343 4444 489999999999999988876543200
Q ss_pred --eeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeec
Q 003001 179 --VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 179 --~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~s 255 (859)
...+. ...++.+++.+..| .+..+|..+++.+...... ...+.. +.+- .+..+++.. ..+.+++.++.+
T Consensus 207 ~~~~~~~-~~~~~~~~~~~~~g----~i~~~d~~~~~~~~~~~~~-~~~i~~-~~~~~~~~~l~~~~-~d~~i~i~d~~~ 278 (425)
T 1r5m_A 207 SLGVDVE-WVDDDKFVIPGPKG----AIFVYQITEKTPTGKLIGH-HGPISV-LEFNDTNKLLLSAS-DDGTLRIWHGGN 278 (425)
T ss_dssp CCBSCCE-EEETTEEEEECGGG----CEEEEETTCSSCSEEECCC-SSCEEE-EEEETTTTEEEEEE-TTSCEEEECSSS
T ss_pred ceeeEEE-EcCCCEEEEEcCCC----eEEEEEcCCCceeeeeccC-CCceEE-EEECCCCCEEEEEc-CCCEEEEEECCC
Confidence 11111 12345555444444 4888999999887665311 111111 1111 344666665 357888888887
Q ss_pred Ce
Q 003001 256 RK 257 (859)
Q Consensus 256 g~ 257 (859)
++
T Consensus 279 ~~ 280 (425)
T 1r5m_A 279 GN 280 (425)
T ss_dssp BS
T ss_pred Cc
Confidence 66
No 37
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=98.03 E-value=0.0099 Score=63.76 Aligned_cols=188 Identities=15% Similarity=0.155 Sum_probs=109.9
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++.+++++.++.|.-.|.++++..-+..+... ..+..+........++.++.++.|+.||..+|+.+.......... .
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~-~ 126 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDA-W 126 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCC-C
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccE-E
Confidence 45788999999998888887765444444433 223333222233344445567899999999999998887654322 1
Q ss_pred CcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
...+ ..++..++. .+|.+..+|..+|+..+......... ..+..+..+..+...+.+| .+..+|+
T Consensus 127 ~~~~-------spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v--~~~~~spdg~~lasg~~dg----~i~iwd~ 193 (321)
T 3ow8_A 127 TLAF-------SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI--LSIAYSPDGKYLASGAIDG----IINIFDI 193 (321)
T ss_dssp CEEE-------CTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCE--EEEEECTTSSEEEEEETTS----CEEEEET
T ss_pred EEEE-------CCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceE--EEEEECCCCCEEEEEcCCC----eEEEEEC
Confidence 1111 224544443 48999999999999998876554322 2232223344444434344 3778899
Q ss_pred CCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 210 MNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+|+.+.+.... ...+. .+.+- .+.++++.. ..+.+++-++.++.
T Consensus 194 ~~~~~~~~~~~h-~~~v~-~l~~spd~~~l~s~s-~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 194 ATGKLLHTLEGH-AMPIR-SLTFSPDSQLLVTAS-DDGYIKIYDVQHAN 239 (321)
T ss_dssp TTTEEEEEECCC-SSCCC-EEEECTTSCEEEEEC-TTSCEEEEETTTCC
T ss_pred CCCcEEEEEccc-CCcee-EEEEcCCCCEEEEEc-CCCeEEEEECCCcc
Confidence 999887655311 11111 11121 334555554 34677777776654
No 38
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.02 E-value=0.0053 Score=71.56 Aligned_cols=199 Identities=10% Similarity=0.008 Sum_probs=112.8
Q ss_pred ccCCCEEEEEeCCCEEEEEEC--CCCccceEEEcCCCcceeeeeeee----cCEEEEEEc-CCCeEEEEeCCCCcEeEEE
Q 003001 50 KTGRKRVVVSTEENVIASLDL--RHGEIFWRHVLGINDVVDGIDIAL----GKYVITLSS-DGSTLRAWNLPDGQMVWES 122 (859)
Q Consensus 50 ~~~~~~Vyvat~~g~l~ALd~--~tG~ilWR~~l~~~~~i~~l~~~~----~~~~V~Vs~-~g~~v~Ald~~tG~llW~~ 122 (859)
+.+++.+|+++.++.|..+|. ++|+++-+...... ..++...- ++..++++. .++.|..||..+|+++.+.
T Consensus 187 spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~--p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i 264 (543)
T 1nir_A 187 SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE--ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 264 (543)
T ss_dssp CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE--EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC--cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee
Confidence 346778999999999999999 89998877664332 22332223 455666655 3679999999999999988
Q ss_pred eccCccccC----CcccccccccccC-CCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEE
Q 003001 123 FLRGSKHSK----PLLLVPTNLKVDK-DSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVG 195 (859)
Q Consensus 123 ~~~~~~ls~----~~~~~~~~~~~~~-~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~ 195 (859)
...+..... +.+.+. ...... ++.+++. .+|+|..+|..+++.+.....+.+.. +..+.....+..+|+.+
T Consensus 265 ~~~g~~~~~~~~~~~~~v~-~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~-~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVA-AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF-LHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp ECCEECSSSCCEESCCCEE-EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSS-CCCEEECTTSCEEEEEE
T ss_pred cccCcccCccccccCCceE-EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcC-ccCceECCCCCEEEEEe
Confidence 764311100 000000 001111 2344443 37899999988887554222221111 22232223444466554
Q ss_pred ecCCceeEEEEEEcCCCceeeeeeeec-ccCccCceEEe-cCcEEEEEE-CCCCeEEEEEeec
Q 003001 196 YAGSSQFHAYQINAMNGELLNHETAAF-SGGFVGDVALV-SSDTLVTLD-TTRSILVTVSFKN 255 (859)
Q Consensus 196 ~~g~~~~~v~ald~~tG~~~w~~~v~~-~~~~s~~~~~v-~~~~lv~~d-~~~~~l~v~~L~s 255 (859)
...+ .+..+|+.+|+.+....+.. |....+..++- ..+.+++.. ...+++.+.++.+
T Consensus 343 ~~~~---~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 343 NNSN---KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp GGGT---EEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cCCC---eEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 4333 47779999999887765422 22112222221 223333333 2446788888877
No 39
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.96 E-value=0.0075 Score=67.29 Aligned_cols=183 Identities=8% Similarity=0.061 Sum_probs=121.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|...|.++|+.++...-... .+..+ ..++..++.++.++.++.||..+|+.+++........
T Consensus 208 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 282 (445)
T 2ovr_B 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV-- 282 (445)
T ss_dssp ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEE--EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE--
T ss_pred cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-cEEEE--EECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce--
Confidence 367899999999999999999999988764332 23333 2244455556666799999999999999887544322
Q ss_pred CcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
..+ ..+ +..+++. .||.+...|..+|+.+++........ ..+ ...++.++..+.+| .+..+|..
T Consensus 283 --~~~----~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v--~~~--~~~~~~l~~~~~dg----~i~vwd~~ 347 (445)
T 2ovr_B 283 --YSL----QFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGM--ELKDNILVSGNADS----TVKIWDIK 347 (445)
T ss_dssp --EEE----EEC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE--EEE--EEETTEEEEEETTS----CEEEEETT
T ss_pred --EEE----EEC-CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE--EEE--EEeCCEEEEEeCCC----eEEEEECC
Confidence 111 112 3344444 49999999999999999886543322 122 23455555544444 38888999
Q ss_pred CCceeeeeeeecccCccC--ceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 211 NGELLNHETAAFSGGFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 211 tG~~~w~~~v~~~~~~s~--~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|+.+....... .... .++-.+++.+++... .|.+++.++.+++
T Consensus 348 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~-dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 348 TGQCLQTLQGPN--KHQSAVTCLQFNKNFVITSSD-DGTVKLWDLKTGE 393 (445)
T ss_dssp TCCEEEEECSTT--SCSSCEEEEEECSSEEEEEET-TSEEEEEETTTCC
T ss_pred CCcEEEEEccCC--CCCCCEEEEEECCCEEEEEeC-CCeEEEEECCCCc
Confidence 999887764211 1111 233335667776664 5899999999887
No 40
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.95 E-value=0.022 Score=63.59 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=111.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|...|.++|+.+++..-. ...+..+.. ..++.++.++.++.++.||..+|+.+.......... .
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-~~~V~~l~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v-~ 207 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV-R 207 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEE-CSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-E
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC-CcCEEEEEE-cCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCcc-E
Confidence 4678999999999999999999998886522 223433422 223355546667799999999999998887544332 1
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCc---------------------ceeeeeEEEeecC
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAE---------------------SVEVQQVIQLDES 188 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~---------------------~~~~~~~v~~~~~ 188 (859)
...+. ...++..++ . .||.+...|..+++.......... ......+ ...+
T Consensus 208 ~l~~~-----~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 280 (464)
T 3v7d_B 208 CLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG 280 (464)
T ss_dssp EEEEE-----ESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET
T ss_pred EEEEe-----cCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC
Confidence 11111 112344444 3 489999999988876544322100 0001111 2344
Q ss_pred CeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 189 ~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+.++..+.+| .+..+|+.+|+.+...... ...+..-++-..++.+++... .+.+++.++.+++
T Consensus 281 ~~l~~~~~d~----~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 281 NIVVSGSYDN----TLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKRCISASM-DTTIRIWDLENGE 343 (464)
T ss_dssp TEEEEEETTS----CEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTEEEEEET-TSCEEEEETTTTE
T ss_pred CEEEEEeCCC----eEEEEECCCCcEEEEecCC-CCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCc
Confidence 5555544444 3888899999988766311 111111111113456666654 5889999998887
No 41
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.91 E-value=0.00043 Score=73.05 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=107.6
Q ss_pred CCCEEEEEeCC-CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 52 GRKRVVVSTEE-NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 52 ~~~~Vyvat~~-g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
+++++|+++.. |.|..+|++||+++-+. ++...-..++ ...++.++.++..++.+..+|++|++++=+.....+..
T Consensus 63 ~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGi-t~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw- 139 (268)
T 3nok_A 63 HQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGL-ASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW- 139 (268)
T ss_dssp ETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEE-EECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-
T ss_pred ECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEE-EEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-
Confidence 47899999865 78999999999999999 7764211244 23455555556567899999999999999998765432
Q ss_pred CCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCccee---eeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVE---VQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~---~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
-+ ..+ ++.+++. .+++|+-+|.++++++=+......... +-.+- ..++.+|+...... .+..
T Consensus 140 ---GL-----t~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe--~~dG~lyanvw~s~---~I~v 205 (268)
T 3nok_A 140 ---GL-----CYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE--CANGVIYANIWHSS---DVLE 205 (268)
T ss_dssp ---CE-----EEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--EETTEEEEEETTCS---EEEE
T ss_pred ---EE-----ecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE--EeCCEEEEEECCCC---eEEE
Confidence 12 123 4566665 378999999999998866655432111 11111 24779997665444 6999
Q ss_pred EEcCCCceeeeeeee
Q 003001 207 INAMNGELLNHETAA 221 (859)
Q Consensus 207 ld~~tG~~~w~~~v~ 221 (859)
+|++||+++-...++
T Consensus 206 IDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 206 IDPATGTVVGVIDAS 220 (268)
T ss_dssp ECTTTCBEEEEEECH
T ss_pred EeCCCCcEEEEEECC
Confidence 999999999777654
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.91 E-value=0.0061 Score=64.08 Aligned_cols=187 Identities=10% Similarity=0.074 Sum_probs=111.6
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
+++.+++++.+|.|...|.++++......+... ..+..+....++..++.++.++.++.||..+|+.+..........
T Consensus 108 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i- 186 (337)
T 1gxr_A 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA- 186 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-
T ss_pred CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCce-
Confidence 466799999999999999999985555544333 223333222244455556666799999999999998887544322
Q ss_pred CCcccccccccccCCC-eEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 131 KPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
.... ...++ .+++. .+|.+..+|..+|+.+.......+. ..+.....+..+++.+..| .+..+|
T Consensus 187 ~~~~-------~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v---~~~~~s~~~~~l~~~~~~~----~i~~~~ 252 (337)
T 1gxr_A 187 SCID-------ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI---FSLGYCPTGEWLAVGMESS----NVEVLH 252 (337)
T ss_dssp EEEE-------ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE---EEEEECTTSSEEEEEETTS----CEEEEE
T ss_pred EEEE-------ECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCce---EEEEECCCCCEEEEEcCCC----cEEEEE
Confidence 1111 12134 34444 4999999999999999887654332 2232223444444433334 388889
Q ss_pred cCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+++..... .....+. .+.+- .+..+++... .+.+++.++.+++
T Consensus 253 ~~~~~~~~~~--~~~~~v~-~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 253 VNKPDKYQLH--LHESCVL-SLKFAYCGKWFVSTGK-DNLLNAWRTPYGA 298 (337)
T ss_dssp TTSSCEEEEC--CCSSCEE-EEEECTTSSEEEEEET-TSEEEEEETTTCC
T ss_pred CCCCCeEEEc--CCcccee-EEEECCCCCEEEEecC-CCcEEEEECCCCe
Confidence 9888764221 1111111 11121 3456666654 5889999988876
No 43
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.91 E-value=0.0014 Score=69.00 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=106.8
Q ss_pred CCEEEEEeCC---CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~~---g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++++|+++.. +.|..+|++||+++=+..++...-..++ ...++.++.++..++.+..+|++|++++=+.....+..
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGi-t~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~ 130 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGI-SDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW 130 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEE-EEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEE-EEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce
Confidence 6799999864 3899999999999999988764211244 23566565556567899999999999999998865432
Q ss_pred cCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeee---eEEEeecCCeEEEEEecCCceeEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQ---QVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~---~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
.+. .+ ++.+++. .+++|+-+|+++++++=+........... .+- ..++.+|+...... .+.
T Consensus 131 ----glt-----~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe--~~~G~lyan~w~~~---~I~ 195 (262)
T 3nol_A 131 ----GLT-----HN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE--WVDGEIFANVWQTN---KIV 195 (262)
T ss_dssp ----CEE-----EC-SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE--EETTEEEEEETTSS---EEE
T ss_pred ----EEe-----cC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE--EECCEEEEEEccCC---eEE
Confidence 121 12 3456664 36789999999999887665542111111 121 24789997665544 699
Q ss_pred EEEcCCCceeeeeeee
Q 003001 206 QINAMNGELLNHETAA 221 (859)
Q Consensus 206 ald~~tG~~~w~~~v~ 221 (859)
.+|++||+++-...++
T Consensus 196 vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 196 RIDPETGKVTGIIDLN 211 (262)
T ss_dssp EECTTTCBEEEEEECT
T ss_pred EEECCCCcEEEEEECC
Confidence 9999999999777653
No 44
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.87 E-value=0.014 Score=68.58 Aligned_cols=202 Identities=12% Similarity=0.016 Sum_probs=116.4
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCC--CCcEeEEEeccCccc
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP--DGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~--tG~llW~~~~~~~~l 129 (859)
++.+||+. ++|.|..+|..||+++.+...+.. ..++....++..+++++.++.|..||.. +++++.+........
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~--p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA--VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSC--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC--ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 45677665 569999999999999999887644 2233223345566666667799999996 999998887644321
Q ss_pred cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCc---------ceeeeeEEEeecCCeEEEEEecC
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAE---------SVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~---------~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
...+-+.. ..+ ++.++|. .++.+..+|..+++++.+...... ...+..+..+ ..+..+++....
T Consensus 244 --~ia~s~~~-~pD-Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s-~~~~~~vv~~~~ 318 (567)
T 1qks_A 244 --SIETSKME-GWE-DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-HYRPEFIVNVKE 318 (567)
T ss_dssp --EEEECCST-TCT-TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-SSSSEEEEEETT
T ss_pred --eeEEcccc-CCC-CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc-CCCCEEEEEecC
Confidence 11111000 012 4567774 489999999999999998875421 0011223222 223344444432
Q ss_pred CceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCeeeEEEEee
Q 003001 199 SSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (859)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~l 265 (859)
. .++..+|..+.+.+--..+.....+.+ ..+- .+.++++.+...+.+.++|+.+++. ...+++
T Consensus 319 ~--g~v~~vd~~~~~~~~v~~i~~~~~~~d-~~~~pdgr~~~va~~~sn~V~ViD~~t~kl-~~~i~v 382 (567)
T 1qks_A 319 T--GKILLVDYTDLNNLKTTEISAERFLHD-GGLDGSHRYFITAANARNKLVVIDTKEGKL-VAIEDT 382 (567)
T ss_dssp T--TEEEEEETTCSSEEEEEEEECCSSEEE-EEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEEC
T ss_pred C--CeEEEEecCCCccceeeeeeccccccC-ceECCCCCEEEEEeCCCCeEEEEECCCCcE-EEEEec
Confidence 1 256777776654332222222111111 1111 2345555555567899999988873 333443
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.85 E-value=0.03 Score=58.85 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=113.2
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++..+++++.+|.+.-.|..+|+..-...-. ...+..+....++..++.++.++.++.||..+|+.+-.........
T Consensus 34 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-- 110 (312)
T 4ery_A 34 NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-- 110 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--
T ss_pred CCCEEEEeeCCCeEEEEeCCCcccchhhccC-CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCE--
Confidence 5677899999999999999999876544321 1223333222233455546667799999999999988776554332
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
..+ ....++..++ . .+|.+...|..+|+............ ..+.....+..++..+.+| .+..+|.
T Consensus 111 --~~~----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~----~i~~wd~ 178 (312)
T 4ery_A 111 --FCC----NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV--SAVHFNRDGSLIVSSSYDG----LCRIWDT 178 (312)
T ss_dssp --EEE----EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECTTSSEEEEEETTS----CEEEEET
T ss_pred --EEE----EEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE--EEEEEcCCCCEEEEEeCCC----cEEEEEC
Confidence 111 1122344444 3 48999999999999888776543322 2222122344444444444 3788899
Q ss_pred CCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 210 MNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+|+.+..........+.. +.+- .+..+++... .+.+++.++.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-d~~i~iwd~~~~~ 225 (312)
T 4ery_A 179 ASGQCLKTLIDDDNPPVSF-VKFSPNGKYILAATL-DNTLKLWDYSKGK 225 (312)
T ss_dssp TTCCEEEEECCSSCCCEEE-EEECTTSSEEEEEET-TTEEEEEETTTTE
T ss_pred CCCceeeEEeccCCCceEE-EEECCCCCEEEEEcC-CCeEEEEECCCCc
Confidence 9998775542111111111 1111 3446666654 5789999998876
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.85 E-value=0.019 Score=62.96 Aligned_cols=188 Identities=9% Similarity=-0.039 Sum_probs=111.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeee-eeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~-~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
++..+++++.+|.+.-.|..+++........ .+.... ...++..++.++.++.++.||..+|+............
T Consensus 67 ~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v- 142 (420)
T 3vl1_A 67 VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA---DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEI- 142 (420)
T ss_dssp EETTEEEEEETTEEEEEECCSEETTTTSCSC---CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCE-
T ss_pred cCCeEEEEEcCCcEEEEEecccceeeEEecC---CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCcc-
Confidence 4567999999999999999998876543322 111111 12234455556666799999999999876644333222
Q ss_pred CCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
.... ...++..++ . .||.+...|..+|+...+........ ..+.....+..++..+.+| .+..+|
T Consensus 143 ~~~~-------~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~~~d~----~v~iwd 209 (420)
T 3vl1_A 143 TKLK-------FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV--TDIAIIDRGRNVLSASLDG----TIRLWE 209 (420)
T ss_dssp EEEE-------ECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE--EEEEEETTTTEEEEEETTS----CEEEEE
T ss_pred EEEE-------ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE--EEEEEcCCCCEEEEEcCCC----cEEEeE
Confidence 1111 122444444 3 48999999999999887775433322 2232223445555544444 388889
Q ss_pred cCCCceeeeeeeecc--cCccCceE--------------------E-ecCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFS--GGFVGDVA--------------------L-VSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~--~~~s~~~~--------------------~-v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+|+.+........ ..+..-.+ + ..+..+++... .|.+++.++.+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-SGVITVHNVFSKE 280 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-TSCEEEEETTTCC
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-CCeEEEEECCCCc
Confidence 999998877653211 00000000 0 12335555554 5789999998876
No 47
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.85 E-value=0.0049 Score=64.23 Aligned_cols=156 Identities=16% Similarity=0.115 Sum_probs=108.7
Q ss_pred CCCEEEEEeCC---CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat~~---g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
+++++|+++.. +.|..+|++||+++=+..++...-..++ ...++.++.++...+.+..+|++|++++=+.....+.
T Consensus 29 ~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi-~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G 107 (243)
T 3mbr_X 29 LRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGI-VAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG 107 (243)
T ss_dssp ETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEE-EEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC
T ss_pred ECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEE-EEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc
Confidence 36899999876 5999999999999988888765211244 2356666666666789999999999999999876543
Q ss_pred ccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEE-EeecCCeEEEEEecCCceeEEEE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVI-QLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v-~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
. -+. .+ ++.+++. .+++|+-+|+++.+++=+.+..........+. ....++.+|+...... .+..
T Consensus 108 w----glt-----~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~---~I~v 174 (243)
T 3mbr_X 108 W----ALT-----SD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTS---RIAR 174 (243)
T ss_dssp C----EEE-----EC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTT---EEEE
T ss_pred e----EEe-----eC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCC---eEEE
Confidence 2 121 12 4566665 47899999999999876665542211111110 0135788997654443 5999
Q ss_pred EEcCCCceeeeeeee
Q 003001 207 INAMNGELLNHETAA 221 (859)
Q Consensus 207 ld~~tG~~~w~~~v~ 221 (859)
+|++||+++-...++
T Consensus 175 IDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQ 189 (243)
T ss_dssp ECTTTCBEEEEEECG
T ss_pred EECCCCCEEEEEECC
Confidence 999999999777654
No 48
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=97.79 E-value=0.0028 Score=67.35 Aligned_cols=139 Identities=9% Similarity=0.018 Sum_probs=80.6
Q ss_pred cccccccccEeEEEeccC--ceeeeeeeeeccCCCEEEEEe-CCCEEEEEECCCCccceEEEcCCC-----cceeeeeee
Q 003001 22 SLYEDQVGLMDWHQQYIG--KVKHAVFHTQKTGRKRVVVST-EENVIASLDLRHGEIFWRHVLGIN-----DVVDGIDIA 93 (859)
Q Consensus 22 Al~edq~G~~dW~~~~vG--~~~~~~f~~~~~~~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~-----~~i~~l~~~ 93 (859)
.+++-+.|+..++...-+ .+....|. .+++.+|+++ .++.|..+|+++|+.+++..+... ..+..+...
T Consensus 24 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~s 100 (349)
T 1jmx_B 24 HVVDVASDTVYKSCVMPDKFGPGTAMMA---PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 100 (349)
T ss_dssp EEEETTTTEEEEEEECSSCCSSCEEEEC---TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC
T ss_pred EEEECCCCcEEEEEecCCCCCCceeEEC---CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEEC
Confidence 344555566666554422 23222232 3455688776 578999999999999999887542 112233222
Q ss_pred ecCEEEEEEcC------------CCeEEEEeCCCCcEe---EEEeccCccccCCcccccccccccCCCeEEEEeCCEEEE
Q 003001 94 LGKYVITLSSD------------GSTLRAWNLPDGQMV---WESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHA 158 (859)
Q Consensus 94 ~~~~~V~Vs~~------------g~~v~Ald~~tG~ll---W~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~a 158 (859)
.++..++++.. ++.|+.||..+|+.. .......... .. ....++.+++ .++.++.
T Consensus 101 pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~-------~~s~dg~l~~-~~~~i~~ 170 (349)
T 1jmx_B 101 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVY--LM-------RAADDGSLYV-AGPDIYK 170 (349)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCC--CE-------EECTTSCEEE-ESSSEEE
T ss_pred CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccc--ce-------eECCCCcEEE-ccCcEEE
Confidence 23345554442 368999999986543 3332222110 11 1222455555 4555999
Q ss_pred EEcCCCcEEEEEecc
Q 003001 159 VSSIDGEILWTRDFA 173 (859)
Q Consensus 159 ld~~tG~~~W~~~~~ 173 (859)
+|..+|+..+.....
T Consensus 171 ~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 171 MDVKTGKYTVALPLR 185 (349)
T ss_dssp ECTTTCCEEEEECST
T ss_pred EeCCCCceecccccc
Confidence 999999998877543
No 49
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.76 E-value=0.023 Score=60.01 Aligned_cols=217 Identities=7% Similarity=0.050 Sum_probs=114.4
Q ss_pred cccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeC-CCEEEEEECCCCcc-ceEEEcCCCcceeeeeeeecCEEE
Q 003001 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTE-ENVIASLDLRHGEI-FWRHVLGINDVVDGIDIALGKYVI 99 (859)
Q Consensus 22 Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~-~g~l~ALd~~tG~i-lWR~~l~~~~~i~~l~~~~~~~~V 99 (859)
.+++.+.|+.......-+.+....| ..+++.+|+++. ++.|..+|+++|++ ......... ...++....++..+
T Consensus 23 ~~~d~~~~~~~~~~~~~~~~~~~~~---s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l 98 (331)
T 3u4y_A 23 SFFSTDTLEILNQITLGYDFVDTAI---TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS-SMADVDITPDDQFA 98 (331)
T ss_dssp EEEETTTCCEEEEEECCCCEEEEEE---CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS-CCCCEEECTTSSEE
T ss_pred EEEeCcccceeeeEEccCCcceEEE---cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC-CccceEECCCCCEE
Confidence 4455555665555442111111122 234566888877 78999999999998 554443322 11113222334444
Q ss_pred EEEcCC-C--eEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCC-eEEEE-e-CCE-EEEEEcCCCcEEEEEec
Q 003001 100 TLSSDG-S--TLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVS-S-KGC-LHAVSSIDGEILWTRDF 172 (859)
Q Consensus 100 ~Vs~~g-~--~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~-~-~g~-l~ald~~tG~~~W~~~~ 172 (859)
+++..+ + .|+.||..+|+.+.......... .. ....++ .+++. . ++. +..++...+..+.....
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~-------~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~ 169 (331)
T 3u4y_A 99 VTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAV--GI-------AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169 (331)
T ss_dssp EECCCSSSSCEEEEEETTTTEEEEEEECCTTEE--EE-------EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred EEecCCCCcccEEEEECCCCCeEEEEECCCCcc--ce-------EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence 454433 3 89999999999988766543221 11 122234 45554 2 355 66555544332222110
Q ss_pred --cCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCce---eeeeeeecccCccCceEEe-cCcEEEEEECCCC
Q 003001 173 --AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL---LNHETAAFSGGFVGDVALV-SSDTLVTLDTTRS 246 (859)
Q Consensus 173 --~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~---~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~ 246 (859)
......+..+..+..+..+|+.+..++ .+..+|+.+|+. +.... ...... .+.+- .+..+++.+...+
T Consensus 170 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~---~v~v~d~~~~~~~~~~~~~~--~~~~~~-~~~~spdg~~l~v~~~~~~ 243 (331)
T 3u4y_A 170 EFISGGTRPFNITFTPDGNFAFVANLIGN---SIGILETQNPENITLLNAVG--TNNLPG-TIVVSRDGSTVYVLTESTV 243 (331)
T ss_dssp EEECSSSSEEEEEECTTSSEEEEEETTTT---EEEEEECSSTTSCEEEEEEE--CSSCCC-CEEECTTSSEEEEECSSEE
T ss_pred ccccCCCCccceEECCCCCEEEEEeCCCC---eEEEEECCCCcccceeeecc--CCCCCc-eEEECCCCCEEEEEEcCCC
Confidence 011112334433334445787664443 588899999998 44442 121111 22222 3445555555556
Q ss_pred eEEEEEeecCe
Q 003001 247 ILVTVSFKNRK 257 (859)
Q Consensus 247 ~l~v~~L~sg~ 257 (859)
.+.+.++.+++
T Consensus 244 ~i~~~d~~~~~ 254 (331)
T 3u4y_A 244 DVFNFNQLSGT 254 (331)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCc
Confidence 78888888877
No 50
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.066 Score=56.72 Aligned_cols=189 Identities=8% Similarity=-0.002 Sum_probs=106.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|...|..+|+.+.+..-... .+..+....++..++.++.++.|+.||..+|+.+.......+..
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-- 119 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-- 119 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE--
T ss_pred CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE--
Confidence 566799999999999999999999887653222 23333222233444445556799999999999999988544432
Q ss_pred CcccccccccccCCCeEEE-E-eC-----CEEEEEEcCCCcEEEEEeccC--cce---------eeeeEEEeecCCeEEE
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SK-----GCLHAVSSIDGEILWTRDFAA--ESV---------EVQQVIQLDESDQIYV 193 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~-----g~l~ald~~tG~~~W~~~~~~--~~~---------~~~~~v~~~~~~~vyv 193 (859)
.... ..++..++ . .+ |.+..+|..++.......... ... ....+.....+..+++
T Consensus 120 ~~~~-------~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (369)
T 3zwl_B 120 RVEF-------SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA 192 (369)
T ss_dssp EEEE-------CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE
T ss_pred EEEE-------ccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE
Confidence 1111 11343333 3 35 888888877775433222211 100 1111211223344444
Q ss_pred EEecCCceeEEEEEEcCC-CceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 194 VGYAGSSQFHAYQINAMN-GELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 194 v~~~g~~~~~v~ald~~t-G~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+.+| .+..+|+.+ ++.+...... ...+.. +.+- .+..+++... .+.+++.++.+++
T Consensus 193 ~~~dg----~i~i~d~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~~~~~-d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 193 GHKDG----KISKYDVSNNYEYVDSIDLH-EKSISD-MQFSPDLTYFITSSR-DTNSFLVDVSTLQ 251 (369)
T ss_dssp EETTS----EEEEEETTTTTEEEEEEECC-SSCEEE-EEECTTSSEEEEEET-TSEEEEEETTTCC
T ss_pred EcCCC----EEEEEECCCCcEeEEEEecC-CCceeE-EEECCCCCEEEEecC-CceEEEEECCCCc
Confidence 33333 588889988 5665554321 111111 1111 3445555553 4788888888776
No 51
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.74 E-value=0.043 Score=60.28 Aligned_cols=188 Identities=10% Similarity=-0.002 Sum_probs=114.2
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~ 132 (859)
++.+++++.+|.|.-.|..+|+............+..+....++..+++++.++.++.||..+|+.+.+........
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--- 179 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARV--- 179 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE---
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCce---
Confidence 45688999999999999999999888877544334444222344455556666799999999999998887544322
Q ss_pred cccccccccccCCCeEEEE-eCCEEEEEEcC-CCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 133 LLLVPTNLKVDKDSLILVS-SKGCLHAVSSI-DGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 133 ~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
..+ ..+ ...++.. .+|.+...|.. .+............. ..+.....+..++..+.+| .+..+|+.
T Consensus 180 -~~~----~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~----~v~iwd~~ 247 (401)
T 4aez_A 180 -GCL----SWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV--CGLAWRSDGLQLASGGNDN----VVQIWDAR 247 (401)
T ss_dssp -EEE----EEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE--EEEEECTTSSEEEEEETTS----CEEEEETT
T ss_pred -EEE----EEC-CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCe--eEEEEcCCCCEEEEEeCCC----eEEEccCC
Confidence 111 122 3344443 48999999998 455566554433222 2222122333444433334 48888999
Q ss_pred CCceeeeeeeecccCccCceEEe--cCcEEEEEE-CCCCeEEEEEeecCe
Q 003001 211 NGELLNHETAAFSGGFVGDVALV--SSDTLVTLD-TTRSILVTVSFKNRK 257 (859)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d-~~~~~l~v~~L~sg~ 257 (859)
+++........ ...+. .+.+- +..++++.. ...+.+++.++.+++
T Consensus 248 ~~~~~~~~~~~-~~~v~-~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 248 SSIPKFTKTNH-NAAVK-AVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp CSSEEEEECCC-SSCCC-EEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CCCccEEecCC-cceEE-EEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 99888765321 11111 11121 234555542 245789999988876
No 52
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.72 E-value=0.024 Score=60.75 Aligned_cols=188 Identities=12% Similarity=0.105 Sum_probs=113.6
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+...++.++.++.|.-.|.++|+.+........ .+..+....++..++.++.++.++.||..+|+..+......... .
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v-~ 168 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI-L 168 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCE-E
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceE-E
Confidence 456788889999999999999998887664432 12222222234455556667899999999999999887654332 1
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
.. ....++..++ . .||.+...|..+|+.+-+........ ..+... .++..++.+...+ .+..+|.
T Consensus 169 ~~-------~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~s-pd~~~l~s~s~dg---~i~iwd~ 235 (321)
T 3ow8_A 169 SI-------AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI--RSLTFS-PDSQLLVTASDDG---YIKIYDV 235 (321)
T ss_dssp EE-------EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC--CEEEEC-TTSCEEEEECTTS---CEEEEET
T ss_pred EE-------EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce--eEEEEc-CCCCEEEEEcCCC---eEEEEEC
Confidence 11 1122454444 3 49999999999999888775433222 222222 2333343343322 3777899
Q ss_pred CCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 210 MNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+++......-. ...+. .+.+- .+..++.... .+.+.+-++.+++
T Consensus 236 ~~~~~~~~~~~h-~~~v~-~~~~sp~~~~l~s~s~-D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 236 QHANLAGTLSGH-ASWVL-NVAFCPDDTHFVSSSS-DKSVKVWDVGTRT 281 (321)
T ss_dssp TTCCEEEEECCC-SSCEE-EEEECTTSSEEEEEET-TSCEEEEETTTTE
T ss_pred CCcceeEEEcCC-CCceE-EEEECCCCCEEEEEeC-CCcEEEEeCCCCE
Confidence 988876543211 01111 11111 3446666654 4788888888876
No 53
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.71 E-value=0.073 Score=56.12 Aligned_cols=191 Identities=12% Similarity=0.079 Sum_probs=110.0
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEE-EcCCCeEEEEeCCCCcE-eEEEeccCccc
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQM-VWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~V-s~~g~~v~Ald~~tG~l-lW~~~~~~~~l 129 (859)
++++|++. .++.|..+|+++|+++.+...+... . .+....++..+++ +..++.|+.||..+|++ ...........
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDF-V-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM 86 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCE-E-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCc-c-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence 56777665 5789999999999999888765432 2 3322223444444 44467999999999998 65555443321
Q ss_pred cCCcccccccccccCCC-eEEEEe-C-C--EEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 130 SKPLLLVPTNLKVDKDS-LILVSS-K-G--CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~-~VvV~~-~-g--~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
... ....++ .+++.. + + .+..+|..+|+.+........ +..+..+..+..+|+.+..++..+.+
T Consensus 87 -~~~-------~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 87 -ADV-------DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD---AVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp -CCE-------EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT---EEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred -cce-------EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC---ccceEECCCCCEEEEEecCCCceEEE
Confidence 001 112234 455433 3 3 999999999998887665432 23333233444688766554322555
Q ss_pred EEEEcCCCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 205 YQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+.++ .+|..........+.+.....+.. ++..+++.+...+.+++.++.+++
T Consensus 156 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 156 FKID-ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp EEEC-TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred EEEC-CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 5555 234443321111111111112222 344566666667889999998877
No 54
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.69 E-value=0.031 Score=59.08 Aligned_cols=191 Identities=9% Similarity=-0.035 Sum_probs=109.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++..+++++.+|.|.-.|.++|+.+........ .+..+....++..++.++.++.++.||..+|+.+.+........ .
T Consensus 24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v-~ 101 (304)
T 2ynn_A 24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI-R 101 (304)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-E
T ss_pred CCCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcE-E
Confidence 567899999999999999999998877664333 23322222334455556667899999999999998887655433 1
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEE-EeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~-~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
...+ ..++..++ . .||.+...|..+|...-. +...... ...+.....++..++.+...+ .+..+|
T Consensus 102 ~~~~-------~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~l~sgs~D~---~v~iwd 169 (304)
T 2ynn_A 102 SIAV-------HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPKDPSTFASGCLDR---TVKVWS 169 (304)
T ss_dssp EEEE-------CSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC--EEEEEECTTCTTEEEEEETTS---EEEEEE
T ss_pred EEEE-------cCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc--EEEEEECCCCCCEEEEEeCCC---eEEEEE
Confidence 1111 22344444 3 489999999888854432 2211111 112221222334444443332 477788
Q ss_pred cCCCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+.++.............+..-.+.. .+.+++.... .+.+++-++.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKS 219 (304)
T ss_dssp TTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET-TSEEEEEETTTTE
T ss_pred CCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC-CCeEEEEeCCCCc
Confidence 8887765544321111111101111 2335655553 5788888888876
No 55
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.69 E-value=0.12 Score=60.46 Aligned_cols=224 Identities=12% Similarity=0.026 Sum_probs=117.1
Q ss_pred cccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECC--CCccceEEEcCCCcceeeeeee----ec
Q 003001 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLR--HGEIFWRHVLGINDVVDGIDIA----LG 95 (859)
Q Consensus 22 Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~--tG~ilWR~~l~~~~~i~~l~~~----~~ 95 (859)
.+++.+.++...+... |.. .+....+.+++.+|+++++|.|..+|.. +++++.+...+.. ..++... -+
T Consensus 180 ~viD~~t~~v~~~i~~-g~~--p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~--P~~ia~s~~~~pD 254 (567)
T 1qks_A 180 ALIDGSTYEIKTVLDT-GYA--VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE--ARSIETSKMEGWE 254 (567)
T ss_dssp EEEETTTCCEEEEEEC-SSC--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE--EEEEEECCSTTCT
T ss_pred EEEECCCCeEEEEEeC-CCC--ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC--CceeEEccccCCC
Confidence 3445555666555543 321 1122234567789999999999999996 9999988776443 2233222 13
Q ss_pred CEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccccC----CcccccccccccCC-CeEEE-E-eCCEEEEEEcCCCcEE
Q 003001 96 KYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSK----PLLLVPTNLKVDKD-SLILV-S-SKGCLHAVSSIDGEIL 167 (859)
Q Consensus 96 ~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~ls~----~~~~~~~~~~~~~~-~~VvV-~-~~g~l~ald~~tG~~~ 167 (859)
+..++++. .++.+..+|..+++++....+....... +.+.+. ......+ ...++ . ..|++..+|..+.+.+
T Consensus 255 Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva-~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~ 333 (567)
T 1qks_A 255 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA-AILASHYRPEFIVNVKETGKILLVDYTDLNNL 333 (567)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE-EEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE-EEEEcCCCCEEEEEecCCCeEEEEecCCCccc
Confidence 44566554 4679999999999999998865421100 000000 0000112 22222 2 2677777777665422
Q ss_pred EEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeee-ec-ccCccCceEEec-CcEE-EEEEC
Q 003001 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETA-AF-SGGFVGDVALVS-SDTL-VTLDT 243 (859)
Q Consensus 168 W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v-~~-~~~~s~~~~~v~-~~~l-v~~d~ 243 (859)
=....+.+.. +..+.....+..+|+.....+ +|..+|.++|+.++...+ .. |..-.+.-++-. .+-+ +....
T Consensus 334 ~v~~i~~~~~-~~d~~~~pdgr~~~va~~~sn---~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~ 409 (567)
T 1qks_A 334 KTTEISAERF-LHDGGLDGSHRYFITAANARN---KLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM 409 (567)
T ss_dssp EEEEEECCSS-EEEEEECTTSCEEEEEEGGGT---EEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBS
T ss_pred eeeeeecccc-ccCceECCCCCEEEEEeCCCC---eEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCC
Confidence 1111111111 111111223444555443322 588899999999888765 22 322122222211 1222 22222
Q ss_pred CCCeEEEEEeec
Q 003001 244 TRSILVTVSFKN 255 (859)
Q Consensus 244 ~~~~l~v~~L~s 255 (859)
..+.+.+++..+
T Consensus 410 g~~~Vsvid~~~ 421 (567)
T 1qks_A 410 GDDSVALIGTDP 421 (567)
T ss_dssp SSSEEEEEECCT
T ss_pred CCCeEEEecCCC
Confidence 345777777766
No 56
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.65 E-value=0.017 Score=64.23 Aligned_cols=184 Identities=13% Similarity=0.095 Sum_probs=116.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|...|..+|+.++...-.. ..+..+ ..++..++.++.++.|+.||..+|+.+..........
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v-- 216 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-GSVLCL--QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV-- 216 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCS-SCEEEE--ECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC-CcEEEE--EECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcE--
Confidence 57789999999999999999999988765322 234344 2244555556667799999999999998887554332
Q ss_pred CcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEec-cCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF-AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~-~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
..+ ... ++.++.. .||.+...|..+++....... .........+ ...++.++..+.+| .+..+|+
T Consensus 217 --~~l----~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg----~i~vwd~ 283 (435)
T 1p22_A 217 --LHL----RFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGDR----TIKVWNT 283 (435)
T ss_dssp --EEE----ECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE--EEETTEEEEEETTS----EEEEEET
T ss_pred --EEE----EEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE--EeCCCEEEEEeCCC----eEEEEEC
Confidence 111 112 3444444 489999999999876532221 1111111122 12455555544444 5888999
Q ss_pred CCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 210 MNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+|+.+....... ..+ .++...++.+++... .+.+++.++.+++
T Consensus 284 ~~~~~~~~~~~~~-~~v--~~~~~~~~~l~~g~~-dg~i~iwd~~~~~ 327 (435)
T 1p22_A 284 STCEFVRTLNGHK-RGI--ACLQYRDRLVVSGSS-DNTIRLWDIECGA 327 (435)
T ss_dssp TTCCEEEEEECCS-SCE--EEEEEETTEEEEEET-TSCEEEEETTTCC
T ss_pred CcCcEEEEEcCCC-CcE--EEEEeCCCEEEEEeC-CCeEEEEECCCCC
Confidence 9999887764211 111 233335667777664 5789999998876
No 57
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.64 E-value=0.0086 Score=62.95 Aligned_cols=181 Identities=12% Similarity=0.047 Sum_probs=106.3
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|...|.++|+.+.+...... .+..+....++..++.++.++.++.||..+|+.+.......+..
T Consensus 152 ~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~-- 228 (337)
T 1gxr_A 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-- 228 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE--
T ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceE--
Confidence 466799999999999999999998877653222 23333222244455556666799999999999999987655432
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
.... ..++..++ . .+|.+..+|..+++...... .... +..+.....+..++..+.+| .+..+|.
T Consensus 229 ~~~~-------s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~--v~~~~~~~~~~~l~~~~~dg----~i~~~~~ 294 (337)
T 1gxr_A 229 SLGY-------CPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESC--VLSLKFAYCGKWFVSTGKDN----LLNAWRT 294 (337)
T ss_dssp EEEE-------CTTSSEEEEEETTSCEEEEETTSSCEEEECC-CSSC--EEEEEECTTSSEEEEEETTS----EEEEEET
T ss_pred EEEE-------CCCCCEEEEEcCCCcEEEEECCCCCeEEEcC-Cccc--eeEEEECCCCCEEEEecCCC----cEEEEEC
Confidence 1111 12344444 3 48999999999988653322 1111 22332222344444433333 5888999
Q ss_pred CCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEe
Q 003001 210 MNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSF 253 (859)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L 253 (859)
.+|+.+.... ....+.. +.+. .+..+++... .|.+++.++
T Consensus 295 ~~~~~~~~~~--~~~~v~~-~~~s~~~~~l~~~~~-dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYGASIFQSK--ESSSVLS-CDISVDDKYIVTGSG-DKKATVYEV 335 (337)
T ss_dssp TTCCEEEEEE--CSSCEEE-EEECTTSCEEEEEET-TSCEEEEEE
T ss_pred CCCeEEEEec--CCCcEEE-EEECCCCCEEEEecC-CCeEEEEEE
Confidence 9999885542 1111111 1121 3345555553 466665554
No 58
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.64 E-value=0.0062 Score=66.98 Aligned_cols=196 Identities=11% Similarity=0.111 Sum_probs=114.3
Q ss_pred CCCEEEEEeCCCEEEEEECCCCcc-------ceEEEcCCCcceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEe
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEI-------FWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~i-------lWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~ 123 (859)
++..+++++.+|.|.-.|..+|+. +....-. ...+..+... .++.+++.++.++.|+.||..+|+.+....
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC-SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC-CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 467899999999999999999943 3333311 1223333212 233455556667799999999999988873
Q ss_pred --ccCccccCCcccccccccccCCCe-EEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 124 --LRGSKHSKPLLLVPTNLKVDKDSL-ILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 124 --~~~~~ls~~~~~~~~~~~~~~~~~-VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
...... ..+ ....++. ++.. .||.+..+|..+|+...+.........+..+.. ..++.+++.++.++
T Consensus 172 ~~~~~~~v----~~~----~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~ 242 (402)
T 2aq5_A 172 PDVHPDTI----YSV----DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF-VSEGKILTTGFSRM 242 (402)
T ss_dssp TTTCCSCE----EEE----EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE-CSTTEEEEEEECTT
T ss_pred cCCCCCce----EEE----EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE-cCCCcEEEEeccCC
Confidence 332221 111 1122343 4444 499999999999999988733221111222322 24566666675433
Q ss_pred ceeEEEEEEcCCCce-eeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 200 SQFHAYQINAMNGEL-LNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 200 ~~~~v~ald~~tG~~-~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
....+..+|+.+++. +..........+....+-..+..+++.....+.+++.++.+++
T Consensus 243 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 243 SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 445788899998875 3333222222222111112345665554456789999998876
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.64 E-value=0.047 Score=60.88 Aligned_cols=184 Identities=12% Similarity=0.056 Sum_probs=113.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC----------------------cceeeeeeeecCEEEEEEcCCCeEE
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----------------------DVVDGIDIALGKYVITLSSDGSTLR 109 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~----------------------~~i~~l~~~~~~~~V~Vs~~g~~v~ 109 (859)
++..+++++.+|.|...|.++++.......... ..+..+ ...+..++.++.++.++
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLI 293 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEE
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEE
Confidence 356789999999999999999987765432211 111112 22334455566667999
Q ss_pred EEeCCCCcEeEEEeccCccccCCcccccccccccCCC-eEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeec
Q 003001 110 AWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDE 187 (859)
Q Consensus 110 Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~ 187 (859)
.||..+|+.+.+........ .. + ....++ .++.. .||.+...|..+|+.+.+........ ..+. ..
T Consensus 294 vwd~~~~~~~~~~~~~~~~v-~~---~----~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v--~~~~--~~ 361 (464)
T 3v7d_B 294 VWDVAQMKCLYILSGHTDRI-YS---T----IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV--GLLR--LS 361 (464)
T ss_dssp EEETTTTEEEEEECCCSSCE-EE---E----EEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEE--EC
T ss_pred EEECCCCcEEEEecCCCCCE-EE---E----EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE--EEEE--Ec
Confidence 99999999999887544322 11 1 112233 44444 48999999999999999886543332 2221 24
Q ss_pred CCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 188 SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 188 ~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+..++..+.+| .+..+|+.+++..+.... .......++..++.++++.. .+.+++-++.+|+
T Consensus 362 ~~~l~s~s~dg----~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 362 DKFLVSAAADG----SIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGK 423 (464)
T ss_dssp SSEEEEEETTS----EEEEEETTTCCEEEEEEC--TTCCCEEEEEECSSEEEEEE--TTEEEEEETTTCC
T ss_pred CCEEEEEeCCC----cEEEEECCCCceeeeecC--CCCccEEEEEeCCCEEEEec--CCeEEEEECCCCc
Confidence 55555555444 588889999987766531 11111123333556776665 4789999999987
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.63 E-value=0.052 Score=65.19 Aligned_cols=191 Identities=10% Similarity=-0.025 Sum_probs=113.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++..+++++.+|.|.-.|..+|+.+.+...... .+..+....++..++.++.++.++.||..+|+.+.+........ .
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v-~ 101 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI-R 101 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-E
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEEecCCC-cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCE-E
Confidence 567899999999999999999999888764322 34333222334445546667799999999999999887554432 1
Q ss_pred CcccccccccccCCCe-EEEE-eCCEEEEEEcCCCc-EEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 132 PLLLVPTNLKVDKDSL-ILVS-SKGCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~-VvV~-~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
... ...++. ++.. .+|.+...|..+|. ..-........ ...+.....++..++.+...+ .+..+|
T Consensus 102 ~~~-------~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg---~v~vwd 169 (814)
T 3mkq_A 102 SIA-------VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPKDPSTFASGCLDR---TVKVWS 169 (814)
T ss_dssp EEE-------ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC--EEEEEEETTEEEEEEEEETTS---EEEEEE
T ss_pred EEE-------EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc--EEEEEEEcCCCCEEEEEeCCC---eEEEEE
Confidence 111 122343 3333 48999999988873 33333222211 122221221344444444433 588889
Q ss_pred cCCCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+|+............+..-+... ++..+++.. ..+.+.+.++.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS 219 (814)
T ss_dssp TTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTE
T ss_pred CCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc
Confidence 9888887766433222222211111 344565554 45788888888876
No 61
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.56 E-value=0.13 Score=57.98 Aligned_cols=194 Identities=11% Similarity=0.002 Sum_probs=114.8
Q ss_pred eccCCCEEEEEeCC-----CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc----------CCCeEEEEeC
Q 003001 49 QKTGRKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNL 113 (859)
Q Consensus 49 ~~~~~~~Vyvat~~-----g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~----------~g~~v~Ald~ 113 (859)
|..+.+++||++.. |.|..+|++|++++++...+... ++...-++..++|+. .++.|..+|+
T Consensus 80 p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P---gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 80 PAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP---HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC---ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 34567889999874 69999999999999999987652 442333555666653 2458999999
Q ss_pred CCCcEeEEEeccCccccCCcccccccccccC-CCeEEEEe---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCC
Q 003001 114 PDGQMVWESFLRGSKHSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESD 189 (859)
Q Consensus 114 ~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~-~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~ 189 (859)
.+++++-+..+.++.- ......+....... ++.+||.. ++.|..+|.++++++-+.+.+... .+. ..+.
T Consensus 157 ~t~~vv~~I~v~g~~r-~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~----~~~--p~g~ 229 (426)
T 3c75_H 157 VTFLPIADIELPDAPR-FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY----HIF--PASP 229 (426)
T ss_dssp TTCCEEEEEEETTCCC-CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE----EEE--EEET
T ss_pred CCCcEEEEEECCCccc-cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce----eec--cCCC
Confidence 9999999988751100 00000000112222 35777753 679999999999999988765321 111 1223
Q ss_pred eEEE-EEecCCceeEEEEEEcCCCceeeeee--eecc-cCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 190 QIYV-VGYAGSSQFHAYQINAMNGELLNHET--AAFS-GGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 190 ~vyv-v~~~g~~~~~v~ald~~tG~~~w~~~--v~~~-~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..|+ .+.+| ++..++..+|++.+... +... ..+.....+. .+..++.. ...+.++++++.++.
T Consensus 230 ~~~v~~~~dG----~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 230 TVFYMNCRDG----SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEG 297 (426)
T ss_dssp TEEEEEETTS----SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSC
T ss_pred cEEEEEcCCC----CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCc
Confidence 4443 33333 36667778888876432 0000 0000111112 12333333 346789999987765
No 62
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.56 E-value=0.0029 Score=68.99 Aligned_cols=192 Identities=9% Similarity=0.110 Sum_probs=111.3
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCC---CcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGI---NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~---~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++++++++.+|.|.-.|.++|+.+....... ...+..+....++..++.++.++.|+.||..+|+.+-.........
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 6789999999999999999999887655421 2234444222233444445566799999999999998877544332
Q ss_pred cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
....+.+ + +..+++. .||.+...|..+|+..-+............+.....++.+++.+...+ .+..+
T Consensus 173 -~~~~~~~-----~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg---~v~~w 242 (344)
T 4gqb_B 173 -TCVAASP-----H-KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG---TVSLV 242 (344)
T ss_dssp -EEEEECS-----S-CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS---EEEEE
T ss_pred -EEEEecC-----C-CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC---cEEEE
Confidence 1111111 1 2345553 389999999999988776544332221222322234555666554433 57778
Q ss_pred EcCCCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 208 NAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+.+|+.+.+..... ..+. .+.+- +..+++.... .+.+++-++.+++
T Consensus 243 d~~~~~~~~~~~~h~-~~v~-~v~fsp~g~~~lasgs~-D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 243 DTKSTSCVLSSAVHS-QCVT-GLVFSPHSVPFLASLSE-DCSLAVLDSSLSE 291 (344)
T ss_dssp ESCC--CCEEEECCS-SCEE-EEEECSSSSCCEEEEET-TSCEEEECTTCCE
T ss_pred ECCCCcEEEEEcCCC-CCEE-EEEEccCCCeEEEEEeC-CCeEEEEECCCCc
Confidence 999999887653211 1111 11121 2235555543 4778888877765
No 63
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.56 E-value=0.031 Score=58.10 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=90.5
Q ss_pred CCEEEEE-eCCCEEEEEECCCCccceEEEcCCC-----cceeeeeeeecCEEEEEEcC--CCeEEEEeCCCCcEeEEEec
Q 003001 53 RKRVVVS-TEENVIASLDLRHGEIFWRHVLGIN-----DVVDGIDIALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 53 ~~~Vyva-t~~g~l~ALd~~tG~ilWR~~l~~~-----~~i~~l~~~~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~ 124 (859)
++.+|++ +.++.|..+|++ |+.+++...... ....++.....++.++++.. ++.|+.|| .+|+.++....
T Consensus 40 ~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~ 117 (286)
T 1q7f_A 40 QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA 117 (286)
T ss_dssp TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT
T ss_pred CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC
Confidence 5678888 467899999986 888877653211 01223322123445555442 56899999 68999887754
Q ss_pred cCccccCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCcee
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~ 202 (859)
..... .. ....+.++.+++.. ++.|+.+| .+|+.++.+........+..+. ...++.+|+.....+
T Consensus 118 ~~~~~---~~----~i~~~~~g~l~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~--- 185 (286)
T 1q7f_A 118 TILQH---PR----GVTVDNKGRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVV-VNDKQEIFISDNRAH--- 185 (286)
T ss_dssp TTCSC---EE----EEEECTTSCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEE-ECSSSEEEEEEGGGT---
T ss_pred ccCCC---ce----EEEEeCCCCEEEEECCCCEEEEEc-CCCCEEEEeCCCCccCCcEEEE-ECCCCCEEEEECCCC---
Confidence 32110 01 11334456777763 78999999 4688888875432212243443 234577887654333
Q ss_pred EEEEEEcCCCceeeee
Q 003001 203 HAYQINAMNGELLNHE 218 (859)
Q Consensus 203 ~v~ald~~tG~~~w~~ 218 (859)
.+..+|+ +|+.+++.
T Consensus 186 ~i~~~~~-~g~~~~~~ 200 (286)
T 1q7f_A 186 CVKVFNY-EGQYLRQI 200 (286)
T ss_dssp EEEEEET-TCCEEEEE
T ss_pred EEEEEcC-CCCEEEEE
Confidence 5888886 67766554
No 64
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.54 E-value=0.0073 Score=65.59 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=95.1
Q ss_pred cCCCE-EEEEeCCCEEEEEECCC------Cccce-----EEEc-----C-CCcceeeeeeeecCEEEEEEcCCCeEEEEe
Q 003001 51 TGRKR-VVVSTEENVIASLDLRH------GEIFW-----RHVL-----G-INDVVDGIDIALGKYVITLSSDGSTLRAWN 112 (859)
Q Consensus 51 ~~~~~-Vyvat~~g~l~ALd~~t------G~ilW-----R~~l-----~-~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald 112 (859)
.+++. +++++.+|.|.-.|.++ ++.+. +... . ....+..+.....+ .+++++.++.++.||
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE 213 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence 34667 88899999999999999 77765 4431 1 11123333222233 555566778999999
Q ss_pred CCCCcEeEEEec---c---CccccCCcccccccccccCCCeEEE-E-eC---CEEEEEEcCCCcEEEEEec---------
Q 003001 113 LPDGQMVWESFL---R---GSKHSKPLLLVPTNLKVDKDSLILV-S-SK---GCLHAVSSIDGEILWTRDF--------- 172 (859)
Q Consensus 113 ~~tG~llW~~~~---~---~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~---g~l~ald~~tG~~~W~~~~--------- 172 (859)
..+|+.++.... . .... .... ...++..++ . .+ |.+..+|..+|+.+.++..
T Consensus 214 ~~~~~~~~~~~~~~~h~~~~~~i-~~i~-------~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 214 LSTLRPLYNFESQHSMINNSNSI-RSVK-------FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285 (397)
T ss_dssp TTTTEEEEEEECCC---CCCCCE-EEEE-------ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred CCCCceeEEEeccccccccCCcc-ceEE-------ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence 999999999887 3 2221 1111 121344444 3 47 8999999999999988875
Q ss_pred ----cCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 173 ----AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 173 ----~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
.... +..+.....+..++..+.+| .+..+|..+|+.+....
T Consensus 286 ~~~~~~~~--v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 286 GEFAHSSW--VMSLSFNDSGETLCSAGWDG----KLRFWDVKTKERITTLN 330 (397)
T ss_dssp CCBSBSSC--EEEEEECSSSSEEEEEETTS----EEEEEETTTTEEEEEEE
T ss_pred cccccCCc--EEEEEECCCCCEEEEEeCCC----eEEEEEcCCCceeEEEe
Confidence 2221 22232223344444433333 58889999999887775
No 65
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.54 E-value=0.019 Score=60.45 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=112.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|.-.|.++|+.+-+..-... .+..+.....+..++.++.++.++.||..+|+.+..........
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-- 152 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV-- 152 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE--
Confidence 567799999999999999999998766543222 23223122233445445566799999999999988776544322
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
..+ ....++..++ . .+|.+...|..+|+.+-......... ...+.....+..++..+.+| .+..+|.
T Consensus 153 --~~~----~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~----~i~iwd~ 221 (312)
T 4ery_A 153 --SAV----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGKYILAATLDN----TLKLWDY 221 (312)
T ss_dssp --EEE----EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC-EEEEEECTTSSEEEEEETTT----EEEEEET
T ss_pred --EEE----EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc-eEEEEECCCCCEEEEEcCCC----eEEEEEC
Confidence 111 1122444444 3 48999999999999877664332111 11222122344444444344 5788899
Q ss_pred CCCceeeeeeeecccCccCceEE-e-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 210 MNGELLNHETAAFSGGFVGDVAL-V-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~-v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+|+.+............-...+ . ++..+++.. ..+.+++-++.+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKE 270 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCC
T ss_pred CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCch
Confidence 99988766542211111111111 1 334555544 45788888888776
No 66
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.021 Score=61.91 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=113.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc-
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS- 130 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls- 130 (859)
+++.+++++.+|.|...| .+|+.+++..-.. ..+..+....++..++.++.++.++.||..+|+.+...........
T Consensus 119 ~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWN-KTGALLNVLNFHR-APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp TSSEEEEEETTSCEEEEE-TTSCEEEEECCCC-SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC-ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 567799999999999999 7888887765322 2233332222334444455567999999999999998876554200
Q ss_pred --------CCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCce
Q 003001 131 --------KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (859)
Q Consensus 131 --------~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~ 201 (859)
....... .....++.+++. .+|.++.+|..+|+............ ..+.....+..++..+.+|
T Consensus 197 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d~--- 269 (425)
T 1r5m_A 197 INAENHSGDGSLGVD--VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI--SVLEFNDTNKLLLSASDDG--- 269 (425)
T ss_dssp ---------CCCBSC--CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE--EEEEEETTTTEEEEEETTS---
T ss_pred eeeccccCCcceeeE--EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce--EEEEECCCCCEEEEEcCCC---
Confidence 0000110 011224555554 58999999999999888876443322 2232223444455444344
Q ss_pred eEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 202 FHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 202 ~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+..+|..+|+........ ...+. .+.+-.++.+++.. ..+.+++.++.+++
T Consensus 270 -~i~i~d~~~~~~~~~~~~~-~~~i~-~~~~~~~~~l~~~~-~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 270 -TLRIWHGGNGNSQNCFYGH-SQSIV-SASWVGDDKVISCS-MDGSVRLWSLKQNT 321 (425)
T ss_dssp -CEEEECSSSBSCSEEECCC-SSCEE-EEEEETTTEEEEEE-TTSEEEEEETTTTE
T ss_pred -EEEEEECCCCccceEecCC-CccEE-EEEECCCCEEEEEe-CCCcEEEEECCCCc
Confidence 3788899999877666311 11111 12222333555555 45889999988876
No 67
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.52 E-value=0.16 Score=56.43 Aligned_cols=190 Identities=11% Similarity=-0.007 Sum_probs=116.5
Q ss_pred eccCCCEEEEEeC-----CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc----------CCCeEEEEeC
Q 003001 49 QKTGRKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNL 113 (859)
Q Consensus 49 ~~~~~~~Vyvat~-----~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~----------~g~~v~Ald~ 113 (859)
|.++++++||++. .+.|..||++|++++++...+... ++...-++..+|++. .++.|..||+
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P---~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP---NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC---cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 4457889999987 589999999999999999876552 232233455566653 2357999999
Q ss_pred CCCcEeEEEeccCcc-c--cCCcccccccccccC-CCeEEEEe---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEee
Q 003001 114 PDGQMVWESFLRGSK-H--SKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLD 186 (859)
Q Consensus 114 ~tG~llW~~~~~~~~-l--s~~~~~~~~~~~~~~-~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~ 186 (859)
.+++++-+..+..+. . ......+ .... ++.++|.. ++.|..+|.++++++-+.+.+... .+. ..
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~----a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~----~~~-P~ 187 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMT----SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY----HIF-PT 187 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGE----EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE----EEE-EE
T ss_pred CCCeEEEEEECCCccccccCCCCceE----EEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc----eee-cC
Confidence 999999988775310 0 0000111 1222 35677753 689999999999999888765421 111 12
Q ss_pred cCCeEEEEEecCCceeEEEEEEcCC-CceeeeeeeecccCccC-----ceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 187 ESDQIYVVGYAGSSQFHAYQINAMN-GELLNHETAAFSGGFVG-----DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 187 ~~~~vyvv~~~g~~~~~v~ald~~t-G~~~w~~~v~~~~~~s~-----~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.....+.++.+|. +..++..+ |++.-... ....... ...++ .++.+++.. +.|.++++++.++.
T Consensus 188 g~~~~~~~~~DG~----~~~v~~~~~g~v~~~~~--~~~~~~~~~~~~~~~~~~~dG~~~~vs-~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 188 APDTFFMHCRDGS----LAKVAFGTEGTPEITHT--EVFHPEDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGD 258 (386)
T ss_dssp ETTEEEEEETTSC----EEEEECCSSSCCEEEEC--CCCSCTTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSS
T ss_pred CCceeEEECCCCC----EEEEECCCCCeEEEeec--ceeccccccccccceeEcCCCcEEEEe-CCCEEEEEECCCCc
Confidence 3445555566553 66677765 77642221 1111111 12222 244454544 46889999987765
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.047 Score=57.88 Aligned_cols=156 Identities=8% Similarity=0.069 Sum_probs=94.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCC-----CeEEEEeCCCCcEeEEEeccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG-----STLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG~llW~~~~~~ 126 (859)
+++.+++++.+|.|...|.++|+.+.+...... +..+.....+..+++++.+ +.++.||..++..........
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP--VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECSSC--EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 467799999999999999999999999885443 3333222334445445545 799999998876554433322
Q ss_pred cccc-------C--CcccccccccccCCCeEEE-E-eCCEEEEEEcCC-CcEEEEEeccCcceeeeeEEEeecCCeEEEE
Q 003001 127 SKHS-------K--PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSID-GEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (859)
Q Consensus 127 ~~ls-------~--~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv 194 (859)
.... . ....+ ....++..++ . .+|.+..+|..+ ++............ ..+.....+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVA----GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI--SDMQFSPDLTYFITS 236 (369)
T ss_dssp SSCSEEEECCTTCCCEEEE----EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE--EEEEECTTSSEEEEE
T ss_pred cceeeeccCCcCccceeEE----EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce--eEEEECCCCCEEEEe
Confidence 1100 0 00011 1111333333 3 489999999999 67777776543332 223222234444443
Q ss_pred EecCCceeEEEEEEcCCCceeeeee
Q 003001 195 GYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
+.+| .+..+|..+|+.+....
T Consensus 237 ~~d~----~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 237 SRDT----NSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp ETTS----EEEEEETTTCCEEEEEE
T ss_pred cCCc----eEEEEECCCCceeeeec
Confidence 3333 58889999999887775
No 69
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.51 E-value=0.019 Score=59.71 Aligned_cols=154 Identities=13% Similarity=0.181 Sum_probs=93.5
Q ss_pred CCCEEEEEeC--CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVSTE--ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat~--~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.++.+|+++. ++.|..+| .+|+.+++..........++. ...++.++++ ..++.|+.||+ +|+.++.......
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~- 162 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVT-VDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKH- 162 (286)
T ss_dssp TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEE-ECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTT-
T ss_pred CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEE-EeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCc-
Confidence 4778999985 78999999 689988776543221222332 2223334444 44578999995 6888887754321
Q ss_pred ccCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
+ .. +.....+.++.+++.. ++.|+.+|. +|+.++++........+..+. ...++.+|+....++ ..+..
T Consensus 163 ~-~~----p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~-~d~~G~l~v~~~~~~--~~i~~ 233 (286)
T 1q7f_A 163 L-EF----PNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVG-INSNGEILIADNHNN--FNLTI 233 (286)
T ss_dssp C-SS----EEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEE-ECTTCCEEEEECSSS--CEEEE
T ss_pred c-CC----cEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEE-ECCCCCEEEEeCCCC--EEEEE
Confidence 1 00 1111344467788863 789999996 788887775432112244443 235678887664431 14777
Q ss_pred EEcCCCceeeeee
Q 003001 207 INAMNGELLNHET 219 (859)
Q Consensus 207 ld~~tG~~~w~~~ 219 (859)
+|. +|+.++...
T Consensus 234 ~~~-~g~~~~~~~ 245 (286)
T 1q7f_A 234 FTQ-DGQLISALE 245 (286)
T ss_dssp ECT-TSCEEEEEE
T ss_pred ECC-CCCEEEEEc
Confidence 784 788776664
No 70
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.48 E-value=0.16 Score=54.06 Aligned_cols=191 Identities=13% Similarity=0.204 Sum_probs=92.5
Q ss_pred EEEEEeCC------CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcC--CCeEEEEeCCCCcEeEEEeccC
Q 003001 55 RVVVSTEE------NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 55 ~Vyvat~~------g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~~~ 126 (859)
++|+++-. -.++.+|+++|+...............+....++.+++++.. ++.|+.||..+|+..--.....
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~ 83 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA 83 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec
Confidence 46776432 148888999998765433322222223322224444444332 4689999998887533222111
Q ss_pred ccccCCcccccccccccCCC-eEEEEe--CCEEEEEEc-CCCcEEEEEeccCcc---------eeeeeEEEeecCCeEEE
Q 003001 127 SKHSKPLLLVPTNLKVDKDS-LILVSS--KGCLHAVSS-IDGEILWTRDFAAES---------VEVQQVIQLDESDQIYV 193 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~-~VvV~~--~g~l~ald~-~tG~~~W~~~~~~~~---------~~~~~~v~~~~~~~vyv 193 (859)
... ....+ ....++ .+++.. ++.+..++. .+|............ ..+..+..+ .++.+|+
T Consensus 84 ~~~--~p~~~----a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v 156 (347)
T 3hfq_A 84 PGT--PPAYV----AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAV 156 (347)
T ss_dssp ESC--CCSEE----EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEE
T ss_pred CCC--CCEEE----EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEE
Confidence 110 00111 122244 455543 688888887 456544332221110 012223222 3444776
Q ss_pred EEecCCceeEEEEEEcC-CCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeec
Q 003001 194 VGYAGSSQFHAYQINAM-NGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 194 v~~~g~~~~~v~ald~~-tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~s 255 (859)
....++ .+..+|+. +|+.........+.+.....+.. ++..+++.+...+.+.+.++..
T Consensus 157 ~~~~~~---~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 157 IDLGSD---KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EETTTT---EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EeCCCC---EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 554333 46666666 67655433322222111111222 3445666666677888888874
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.44 E-value=0.18 Score=57.85 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=76.0
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEc---CCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVL---GINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l---~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++.+++++.+|.|...|.++|+.+.+..- .....+..+... ++..++.++.++.++.||..+|+.+..........
T Consensus 219 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 297 (615)
T 1pgu_A 219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 297 (615)
T ss_dssp CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence 56788999999999999999998877521 222234444333 44455556666799999999999999988763221
Q ss_pred cCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEec
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~ 172 (859)
......+ ....++.+++. .+|.+..+|..+|+.......
T Consensus 298 ~~~~~~~----~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 298 GNQQVGV----VATGNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp GGCEEEE----EEEETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred cCceeEE----EeCCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 0011111 11123445444 489999999998888777654
No 72
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=97.44 E-value=0.12 Score=55.20 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=84.6
Q ss_pred EEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCc--EeEEEeccCcccc-CCcccccccc
Q 003001 64 VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQ--MVWESFLRGSKHS-KPLLLVPTNL 140 (859)
Q Consensus 64 ~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~--llW~~~~~~~~ls-~~~~~~~~~~ 140 (859)
.|..+|+.+|+++....-..-....++....++.+++.....+.|+.||+ +|+ .++........-. ......|.+.
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 69999999999864332111011224422223334433344579999997 565 5665532111000 0000111122
Q ss_pred cccC-CCeEEEEe---CCEEEEEEcCCCcEEEEEeccCc-------ce-eeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 141 KVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAE-------SV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 141 ~~~~-~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~-------~~-~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
..+. ++.++|.. +++|..+| .+|+.++.+..... .+ .|..+......+.+|+....++ ++..+|
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~---~I~~~~ 224 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG---RIQCFK 224 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT---EEEEEE
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC---EEEEEE
Confidence 3443 57788853 68999999 78999888754321 11 2444432223488998665443 688899
Q ss_pred cCCCceeeeee
Q 003001 209 AMNGELLNHET 219 (859)
Q Consensus 209 ~~tG~~~w~~~ 219 (859)
+.+|+.+....
T Consensus 225 ~~~G~~~~~~~ 235 (329)
T 3fvz_A 225 TDTKEFVREIK 235 (329)
T ss_dssp TTTCCEEEEEC
T ss_pred CCCCcEEEEEe
Confidence 99999887663
No 73
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.43 E-value=0.12 Score=65.59 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=98.5
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
+++..+++++.+|.|.-.|..+|+.+.+..-. ...+..+....++..++.++.++.|+-||..+|+.+..........
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v- 702 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAH-EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV- 702 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEEEEeccC-CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE-
Confidence 35677889999999999999999988776522 2234333222234455545566799999999999999887655433
Q ss_pred CCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
....+. .+.++.+++. .||.+...|..+|+...+........ ..+.....+..++..+.+| .+..+|
T Consensus 703 ~~~~~~-----~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v--~~~~~sp~~~~l~s~s~dg----~v~vwd 771 (1249)
T 3sfz_A 703 NCCHFT-----NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV--NHCRFSPDDELLASCSADG----TLRLWD 771 (1249)
T ss_dssp EEEEEC-----SSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE--EEEEECSSTTEEEEEESSS----EEEEEE
T ss_pred EEEEEe-----cCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE--EEEEEecCCCEEEEEECCC----eEEEEe
Confidence 111111 1213344443 38999999999999888776443332 2222223444444444344 477788
Q ss_pred cCCCceeeeee
Q 003001 209 AMNGELLNHET 219 (859)
Q Consensus 209 ~~tG~~~w~~~ 219 (859)
..+|+......
T Consensus 772 ~~~~~~~~~~~ 782 (1249)
T 3sfz_A 772 VRSANERKSIN 782 (1249)
T ss_dssp GGGTEEEEEEE
T ss_pred CCCCcccceec
Confidence 88888776553
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.43 E-value=0.0052 Score=67.43 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=113.0
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
.+++.+++++.+|.|.-.|.++|+...... .....+..+....++..++.++.++.|+.||..+|+.+..........
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v- 184 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV- 184 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE-
T ss_pred cCCCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE-
Confidence 356678899999999999999998754421 122234333222234455556666799999999999988876544332
Q ss_pred CCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcce-eeeeEEEe--------------------ec
Q 003001 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQL--------------------DE 187 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~--------------------~~ 187 (859)
....+ ..++..++ . .||.+...|..+|+..+.+....... ....+... ..
T Consensus 185 ~~~~~-------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 185 TDIAI-------IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp EEEEE-------ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred EEEEE-------cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 11111 22344444 3 48999999999999999887532111 01111000 12
Q ss_pred CCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCc-EEEEEECCCCeEEEEEeecCe
Q 003001 188 SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSD-TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 188 ~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~-~lv~~d~~~~~l~v~~L~sg~ 257 (859)
++..++.+...+ .+..+|+.+|+...+........+.. +.+- .+. ++++... .|.+++.++.++.
T Consensus 258 ~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 258 YGKYVIAGHVSG---VITVHNVFSKEQTIQLPSKFTCSCNS-LTVDGNNANYIYAGYE-NGMLAQWDLRSPE 324 (420)
T ss_dssp TTEEEEEEETTS---CEEEEETTTCCEEEEECCTTSSCEEE-EEECSSCTTEEEEEET-TSEEEEEETTCTT
T ss_pred CCCEEEEEcCCC---eEEEEECCCCceeEEcccccCCCcee-EEEeCCCCCEEEEEeC-CCeEEEEEcCCCc
Confidence 344444444333 38888999998877663211111111 1111 233 6666654 4888888888764
No 75
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=97.42 E-value=0.0051 Score=65.32 Aligned_cols=151 Identities=11% Similarity=0.117 Sum_probs=90.9
Q ss_pred CCEEEE-EeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEE-EcCCCeEEEEeCCCCcEeEEEeccCcc--
Q 003001 53 RKRVVV-STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRGSK-- 128 (859)
Q Consensus 53 ~~~Vyv-at~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~V-s~~g~~v~Ald~~tG~llW~~~~~~~~-- 128 (859)
++.+|+ ++.++.|..+|+++|+++++..++.......+....++..+++ +..++.|+.||..+|+.+++.......
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~ 89 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 89 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence 445554 5678999999999999999988765211222322223344444 445679999999999999998864310
Q ss_pred ---ccCCcccccccccccCCC-eEEEEe-------------CCEEEEEEcCCCcEE---EEEeccCcceeeeeEEEeecC
Q 003001 129 ---HSKPLLLVPTNLKVDKDS-LILVSS-------------KGCLHAVSSIDGEIL---WTRDFAAESVEVQQVIQLDES 188 (859)
Q Consensus 129 ---ls~~~~~~~~~~~~~~~~-~VvV~~-------------~g~l~ald~~tG~~~---W~~~~~~~~~~~~~~v~~~~~ 188 (859)
..... ....++ .+++.. ++.+..+|..+|+.. .....+.. +..+.. ..+
T Consensus 90 ~~~~~~~~-------~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~-s~d 158 (349)
T 1jmx_B 90 VGRSMYSF-------AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ---VYLMRA-ADD 158 (349)
T ss_dssp EEECSSCE-------EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSS---CCCEEE-CTT
T ss_pred ccccccce-------EECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCc---ccceeE-CCC
Confidence 00111 122234 455543 389999999986542 33333321 112211 234
Q ss_pred CeEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003001 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 189 ~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v 220 (859)
+.+|+. .+ .+..+|+.+|+.++....
T Consensus 159 g~l~~~--~~----~i~~~d~~~~~~~~~~~~ 184 (349)
T 1jmx_B 159 GSLYVA--GP----DIYKMDVKTGKYTVALPL 184 (349)
T ss_dssp SCEEEE--SS----SEEEECTTTCCEEEEECS
T ss_pred CcEEEc--cC----cEEEEeCCCCceeccccc
Confidence 447762 22 288899999998876543
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.38 E-value=0.027 Score=61.88 Aligned_cols=191 Identities=15% Similarity=0.099 Sum_probs=101.0
Q ss_pred CCEEEEEeCCCEEEEEECCCC-ccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIASLDLRHG-EIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG-~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++.+++++.+|.|...|.+++ ..+.... .....+..+....++..++.++.++.|+.||..+|+.++......... .
T Consensus 186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v-~ 263 (401)
T 4aez_A 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV-K 263 (401)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC-C
T ss_pred CCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE-E
Confidence 344555555555555555532 2222221 111122223112234455556666799999999999999886544332 1
Q ss_pred CcccccccccccCCCeEEEE-e---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 132 PLLLVPTNLKVDKDSLILVS-S---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~-~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
.....+ + +..+++. + +|.+..+|..+|+.+........ ...+.....+..+++.+ |.....+..+
T Consensus 264 ~~~~~p-----~-~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~--g~~dg~i~v~ 332 (401)
T 4aez_A 264 AVAWCP-----W-QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ---VTSLIWSPHSKEIMSTH--GFPDNNLSIW 332 (401)
T ss_dssp EEEECT-----T-STTEEEEECCTTTCEEEEEETTTCCEEEEEECSSC---EEEEEECSSSSEEEEEE--CTTTCEEEEE
T ss_pred EEEECC-----C-CCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCc---EEEEEECCCCCeEEEEe--ecCCCcEEEE
Confidence 112211 2 2345553 3 89999999999999998865432 22232223344444332 1112257778
Q ss_pred EcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 208 NAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|..+|+......+......-..+.+- .+..+++.. ..|.+++-++.+++
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~-~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA-SDENLKFWRVYDGD 382 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC-TTSEEEEEECCC--
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEECCCCc
Confidence 88888766554432221111112222 344666554 45889999888876
No 77
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.36 E-value=0.22 Score=55.08 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=91.0
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++..+++++.+|.|.-.|..+|+..-...-.. ..+..+....++..++.++.++.++.||..+++.+-........+
T Consensus 119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~-~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V-- 195 (410)
T 1vyh_C 119 VFSVMVSASEDATIKVWDYETGDFERTLKGHT-DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV-- 195 (410)
T ss_dssp SSSEEEEEESSSCEEEEETTTCCCCEEECCCS-SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCE--
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCE--
Confidence 45678899999999999999999875543222 233333222234455546667799999999998876655433222
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
..+ ....++..++ . .|+.+...|..+|+.+-++....... ..+. ...++..++.+...+ .+..+|.
T Consensus 196 --~~v----~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v--~~~~-~~~~g~~l~s~s~D~---~v~vwd~ 263 (410)
T 1vyh_C 196 --SSV----SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV--RMVR-PNQDGTLIASCSNDQ---TVRVWVV 263 (410)
T ss_dssp --EEE----EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEE-ECTTSSEEEEEETTS---CEEEEET
T ss_pred --EEE----EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE--EEEE-ECCCCCEEEEEcCCC---eEEEEEC
Confidence 111 1122344444 3 49999999999999877765443322 1222 123344444443332 3777788
Q ss_pred CCCceeee
Q 003001 210 MNGELLNH 217 (859)
Q Consensus 210 ~tG~~~w~ 217 (859)
.+|+..-+
T Consensus 264 ~~~~~~~~ 271 (410)
T 1vyh_C 264 ATKECKAE 271 (410)
T ss_dssp TTCCEEEE
T ss_pred CCCceeeE
Confidence 88876543
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.36 E-value=0.062 Score=57.95 Aligned_cols=194 Identities=13% Similarity=0.016 Sum_probs=113.2
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcC------------CCcceeeeeeee-cCEEEEEEcCCCeEEEEeCCCCcE
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLG------------INDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQM 118 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~------------~~~~i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~tG~l 118 (859)
+++.+++++.+|.|...|..+|+........ ....+..+.... ++..++.++.++.++.||..+|+.
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 4677999999999999999999988877532 112233332122 333455455567999999999999
Q ss_pred eEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEe
Q 003001 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGY 196 (859)
Q Consensus 119 lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~ 196 (859)
........... .....+ ...++..++ . .+|.+..+|..+|+............ ..+.....+..+++.+.
T Consensus 135 ~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~ll~~~~ 206 (408)
T 4a11_B 135 ADVFNFEETVY--SHHMSP----VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI--LAVSWSPRYDYILATAS 206 (408)
T ss_dssp EEEEECSSCEE--EEEECS----SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE--EEEEECSSCTTEEEEEE
T ss_pred ceeccCCCcee--eeEeec----CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE--EEEEECCCCCcEEEEEc
Confidence 99988655432 111211 111233444 3 48999999999999888876443322 22222223443444444
Q ss_pred cCCceeEEEEEEcCCCcee-eeeeee-------cc---cCccCc--eEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 197 AGSSQFHAYQINAMNGELL-NHETAA-------FS---GGFVGD--VALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~-w~~~v~-------~~---~~~s~~--~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+ .+..+|..+++.. ...... .. ....+. ++.. .+..+++... .+.+++.++.+++
T Consensus 207 ~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~ 278 (408)
T 4a11_B 207 ADS---RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSNGE 278 (408)
T ss_dssp TTS---CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCC
T ss_pred CCC---cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-CCeEEEEECCCCc
Confidence 433 3778898887632 211100 00 011111 1112 3446666654 5789999998876
No 79
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.33 E-value=0.26 Score=53.91 Aligned_cols=190 Identities=9% Similarity=0.074 Sum_probs=101.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc-----------------ceeeeeeeecCEEEEEEcCCCeEEEEeCC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-----------------VVDGIDIALGKYVITLSSDGSTLRAWNLP 114 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-----------------~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~ 114 (859)
++..+.+++ ++.+.-.|..+|+.+.+....... .+..+....++..++.++.++.|+.||..
T Consensus 75 dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~ 153 (393)
T 1erj_A 75 DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE 153 (393)
T ss_dssp TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 344455544 567888999999988775432110 12222112233444445667799999999
Q ss_pred CCcEeEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEE
Q 003001 115 DGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIY 192 (859)
Q Consensus 115 tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vy 192 (859)
+|+.+-......... ....+ ..++..++ . .|+.+...|..+|+........... ..+.....++..+
T Consensus 154 ~~~~~~~~~~h~~~v-~~~~~-------~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l 222 (393)
T 1erj_A 154 NRKIVMILQGHEQDI-YSLDY-------FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV---TTVAVSPGDGKYI 222 (393)
T ss_dssp TTEEEEEECCCSSCE-EEEEE-------CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE---EEEEECSTTCCEE
T ss_pred CCcEEEEEccCCCCE-EEEEE-------cCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCc---EEEEEECCCCCEE
Confidence 999887766544322 11111 11344444 3 4999999999999988877654322 1222122244444
Q ss_pred EEEecCCceeEEEEEEcCCCceeeeeeeecc--cCccCc---eEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 193 VVGYAGSSQFHAYQINAMNGELLNHETAAFS--GGFVGD---VALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 193 vv~~~g~~~~~v~ald~~tG~~~w~~~v~~~--~~~s~~---~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+.+...+ .+..+|..+|+.+........ .+-.+. +.+- .+..+++... .+.+++-++.++.
T Consensus 223 ~~~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-d~~v~~wd~~~~~ 289 (393)
T 1erj_A 223 AAGSLDR---AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQNAN 289 (393)
T ss_dssp EEEETTS---CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET-TSEEEEEEC----
T ss_pred EEEcCCC---cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC-CCEEEEEECCCCC
Confidence 4444333 377789999987755432111 111111 1111 3345655553 4777777776543
No 80
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.23 E-value=0.063 Score=60.58 Aligned_cols=227 Identities=11% Similarity=0.004 Sum_probs=123.0
Q ss_pred ccccccccEeEEEeccCceeeeeeeeeccCCCEEEEEe----------CCCEEEEEECCCCccceEEEcCCC------cc
Q 003001 23 LYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVST----------EENVIASLDLRHGEIFWRHVLGIN------DV 86 (859)
Q Consensus 23 l~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyvat----------~~g~l~ALd~~tG~ilWR~~l~~~------~~ 86 (859)
+++-..++..++... |..-.- ..+.+++++||+. ..+.|..+|++|++++-+..++.. ..
T Consensus 103 VID~~t~~vv~~I~v-G~~Pgi---a~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~ 178 (426)
T 3c75_H 103 VIDGSTGRILGMTDG-GFLPHP---VAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY 178 (426)
T ss_dssp EEETTTTEEEEEEEE-CSSCEE---EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred EEECCCCEEEEEEEC-CCCCce---EECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence 344445555555554 331111 1345678899997 468999999999999999887511 01
Q ss_pred eeeeeeeecCEEEEEEcC--CCeEEEEeCCCCcEeEEEeccCccc------------c--CCccccc-------------
Q 003001 87 VDGIDIALGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKH------------S--KPLLLVP------------- 137 (859)
Q Consensus 87 i~~l~~~~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~~~~~l------------s--~~~~~~~------------- 137 (859)
..++....++..++|+.. ++.|..+|..+++++-+..+..... + .....+.
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~ 258 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEV 258 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence 113322335556776642 5689999999999999888743210 0 0000000
Q ss_pred --c-------cccccC-CCeEEEE-eCCEEEEEEcCCCcE----EEEEeccCc---ceeeee---EEEeecCCeEEEEEe
Q 003001 138 --T-------NLKVDK-DSLILVS-SKGCLHAVSSIDGEI----LWTRDFAAE---SVEVQQ---VIQLDESDQIYVVGY 196 (859)
Q Consensus 138 --~-------~~~~~~-~~~VvV~-~~g~l~ald~~tG~~----~W~~~~~~~---~~~~~~---~v~~~~~~~vyvv~~ 196 (859)
. ...... .+.+++. ..|+++.+|..++.. .|+...... ...+.. +.....++.+|+...
T Consensus 259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 0 000000 1122222 244555555544432 132110000 001111 221235678887653
Q ss_pred cCC------ceeEEEEEEcCCCceeeeeeeec-ccCccCceEEe-cCc-EEEEEECCCCeEEEEEeecCe
Q 003001 197 AGS------SQFHAYQINAMNGELLNHETAAF-SGGFVGDVALV-SSD-TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 197 ~g~------~~~~v~ald~~tG~~~w~~~v~~-~~~~s~~~~~v-~~~-~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+. ..-.|..+|+++++++-...+.. |.++ .+- ++. .++......+.+.++|+.+++
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gi----a~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSI----NVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEE----EECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeE----EEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 211 12469999999999998776544 3322 221 344 677777667899999999987
No 81
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.22 E-value=0.27 Score=54.09 Aligned_cols=147 Identities=11% Similarity=-0.019 Sum_probs=88.4
Q ss_pred ccCCCEEEEEe----------CCCEEEEEECCCCccceEEEcCCCc------ceeeeeeeecCEEEEEEc-C-CCeEEEE
Q 003001 50 KTGRKRVVVST----------EENVIASLDLRHGEIFWRHVLGIND------VVDGIDIALGKYVITLSS-D-GSTLRAW 111 (859)
Q Consensus 50 ~~~~~~Vyvat----------~~g~l~ALd~~tG~ilWR~~l~~~~------~i~~l~~~~~~~~V~Vs~-~-g~~v~Al 111 (859)
+.+++.+|++. ..+.|..+|+++++++-+..++... ....+...-++..++++. . .+.|..+
T Consensus 74 spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~vi 153 (373)
T 2mad_H 74 AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEE
Confidence 34678899997 3578999999999999888775110 011232223445566554 2 4689999
Q ss_pred eCCCCcEeEE-EeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccC--cceee--eeEEE
Q 003001 112 NLPDGQMVWE-SFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAA--ESVEV--QQVIQ 184 (859)
Q Consensus 112 d~~tG~llW~-~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~v~ 184 (859)
| ++|+++-+ ..+.... .+.+ . .+..++ . .+|++..+|. +|+..+...... ..-.+ .....
T Consensus 154 D-~t~~~~~~~i~~~~~~-----~~~~-----~-~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~ 220 (373)
T 2mad_H 154 V-QGGSSDDQLLSSPTCY-----HIHP-----G-APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQ 220 (373)
T ss_pred E-CCCCEEeEEcCCCceE-----EEEe-----C-CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeeccee
Confidence 9 99999866 5543321 1111 2 233444 3 5999999999 999987644210 00001 01111
Q ss_pred eecCCeEEEEEecCCceeEEEEEEcCCCc
Q 003001 185 LDESDQIYVVGYAGSSQFHAYQINAMNGE 213 (859)
Q Consensus 185 ~~~~~~vyvv~~~g~~~~~v~ald~~tG~ 213 (859)
...++.+|+++..+ .++.+|..++.
T Consensus 221 ~~~~~~~~~~~~~~----~v~vid~~~~~ 245 (373)
T 2mad_H 221 ANKSGRIVWPVYSG----KILQADISAAG 245 (373)
T ss_pred EecCCEEEEEcCCc----eEEEEeccCCc
Confidence 23456666666544 58889987764
No 82
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=97.21 E-value=0.0095 Score=68.82 Aligned_cols=155 Identities=17% Similarity=0.319 Sum_probs=93.5
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcC----------CCcc--------eeeeeee----ecC--EEEEEEc---CC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG----------INDV--------VDGIDIA----LGK--YVITLSS---DG 105 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~----------~~~~--------i~~l~~~----~~~--~~V~Vs~---~g 105 (859)
..+||+++.+|.|.|+|+. |+++|...-. .+.- +++.+.. .++ ..+.+++ .|
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 4679999999999999998 9999998521 1100 1121111 222 3444443 35
Q ss_pred CeEEEEeCCC---CcEeEEEeccC-ccc--cCCcccccccccccCCCeEEEEeC--------CEEEEEEcCCCcEEEEEe
Q 003001 106 STLRAWNLPD---GQMVWESFLRG-SKH--SKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 106 ~~v~Ald~~t---G~llW~~~~~~-~~l--s~~~~~~~~~~~~~~~~~VvV~~~--------g~l~ald~~tG~~~W~~~ 171 (859)
+.++|||..+ .+++||+.... +.+ .-+.|.+. .....+-++++.+ ..|+.+|+++|+++|+..
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~---~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~ 240 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVA---RLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLE 240 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEE---ECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEE
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEE---EecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEe
Confidence 7899999776 89999998322 111 11122222 2222345555543 389999999999999987
Q ss_pred ccCcc-----eeeeeEEEee---cCCeEEEEEecCCceeEEEEEEcCCCcee
Q 003001 172 FAAES-----VEVQQVIQLD---ESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (859)
Q Consensus 172 ~~~~~-----~~~~~~v~~~---~~~~vyvv~~~g~~~~~v~ald~~tG~~~ 215 (859)
.+... +....+++.. ..+.+|+....| .|.-+|+.+....
T Consensus 241 ~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~G----nlWRfDl~~~~~~ 288 (570)
T 3hx6_A 241 VTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQG----NLWRFDLIAGKVN 288 (570)
T ss_dssp ECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTS----EEEEEECSCSSCC
T ss_pred cCCCCccCCccccceEEecCCCCceeEEEEEeCCC----cEEEEEcCCCCcc
Confidence 65321 1111122211 135688755555 5999999887763
No 83
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.20 E-value=0.16 Score=64.37 Aligned_cols=155 Identities=11% Similarity=0.064 Sum_probs=90.5
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEec
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~ 172 (859)
++..++.++.++.|+-||..+|+.+.+........ ..+ ....++..++ . .||.+...|..+|+.+.++..
T Consensus 626 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v----~~~----~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 697 (1249)
T 3sfz_A 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEV----LCC----AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE 697 (1249)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE----EEE----EECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCE----EEE----EEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence 33445545566799999999999998887554332 111 1122444444 3 489999999999999988875
Q ss_pred cCcceeeeeEEEeec-CCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEE
Q 003001 173 AAESVEVQQVIQLDE-SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTV 251 (859)
Q Consensus 173 ~~~~~~~~~~v~~~~-~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~ 251 (859)
..... ..+..... ++.+++.+...+ .+..+|..+|+.+...... ...+..-++...+..+++... .|.+.+-
T Consensus 698 ~~~~v--~~~~~~~~~~~~~l~sg~~d~---~v~vwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~-dg~v~vw 770 (1249)
T 3sfz_A 698 HSEQV--NCCHFTNKSNHLLLATGSNDF---FLKLWDLNQKECRNTMFGH-TNSVNHCRFSPDDELLASCSA-DGTLRLW 770 (1249)
T ss_dssp CSSCE--EEEEECSSSSCCEEEEEETTS---CEEEEETTSSSEEEEECCC-SSCEEEEEECSSTTEEEEEES-SSEEEEE
T ss_pred CCCcE--EEEEEecCCCceEEEEEeCCC---eEEEEECCCcchhheecCC-CCCEEEEEEecCCCEEEEEEC-CCeEEEE
Confidence 54332 12221222 333444343332 4788899999877655311 111111111114456666654 4889999
Q ss_pred EeecCeeeEEEEee
Q 003001 252 SFKNRKIAFQETHL 265 (859)
Q Consensus 252 ~L~sg~~~~~~~~l 265 (859)
++.++. ....+..
T Consensus 771 d~~~~~-~~~~~~~ 783 (1249)
T 3sfz_A 771 DVRSAN-ERKSINV 783 (1249)
T ss_dssp EGGGTE-EEEEEEC
T ss_pred eCCCCc-ccceecc
Confidence 998876 2444443
No 84
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.20 E-value=0.14 Score=54.74 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=108.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEE--cCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHV--LGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~--l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
+++.+++++.+|.+.-.|..+++...+.. +... ..+..+....++.+++ ++.++.++.||..+|+.+-........
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s-~s~d~~i~~wd~~~~~~~~~~~~h~~~ 186 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT-SSGDTTCALWDIETGQQTTTFTGHTGD 186 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEE-EETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEE-EECCCcEEEEECCCCcEEEEEcCCCCc
Confidence 46678889999999999998876544332 2211 2232232223444444 555679999999999998777654432
Q ss_pred ccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
. ..+ ....++..++. .||.+...|..+|+..-++....... ..+.....+..++..+.+| .+..
T Consensus 187 v----~~~----~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v--~~v~~~p~~~~l~s~s~d~----~v~i 252 (340)
T 1got_B 187 V----MSL----SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDA----TCRL 252 (340)
T ss_dssp E----EEE----EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE--EEEEECTTSSEEEEEETTS----CEEE
T ss_pred e----EEE----EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCE--EEEEEcCCCCEEEEEcCCC----cEEE
Confidence 2 111 11224555553 49999999999999887775443322 2222222344444444344 3777
Q ss_pred EEcCCCceeeeeeeecccCccC--ceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 207 INAMNGELLNHETAAFSGGFVG--DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 207 ld~~tG~~~w~~~v~~~~~~s~--~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|..+++.+..... +....+ .+.+- .+.++++... .+.+++-++.++.
T Consensus 253 wd~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~ 303 (340)
T 1got_B 253 FDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKAD 303 (340)
T ss_dssp EETTTTEEEEEECC--TTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCC
T ss_pred EECCCCcEEEEEcc--CCcccceEEEEECCCCCEEEEECC-CCeEEEEEcccCc
Confidence 89999987765531 111111 11111 3446666653 4778888877665
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.19 E-value=0.078 Score=58.88 Aligned_cols=185 Identities=8% Similarity=0.075 Sum_probs=114.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|...|.++|+.+.+..-.. ..+..+ ...++.++.++.++.|+.||..+++...........- .
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~l--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~ 257 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC-EAVLHL--RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-A 257 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCC-SCEEEE--ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS-S
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC-CcEEEE--EEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC-C
Confidence 47789999999999999999999887765322 223333 2234455556667799999999998764322211110 1
Q ss_pred CcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
....+ ..+ ++.+++. .||.+...|..+|+.+.+........ ..+ ...++.++..+.+| .+..+|..
T Consensus 258 ~v~~~----~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~--~~~~~~l~~g~~dg----~i~iwd~~ 324 (435)
T 1p22_A 258 AVNVV----DFD-DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACL--QYRDRLVVSGSSDN----TIRLWDIE 324 (435)
T ss_dssp CEEEE----EEE-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEE--EEETTEEEEEETTS----CEEEEETT
T ss_pred cEEEE----EeC-CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcE--EEE--EeCCCEEEEEeCCC----eEEEEECC
Confidence 11111 122 3444444 49999999999999998887543332 122 12455555544444 38889999
Q ss_pred CCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 211 NGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|+.+....... ..+ .++...+..+++... .|.+++.++.++.
T Consensus 325 ~~~~~~~~~~h~-~~v--~~~~~~~~~l~sg~~-dg~i~vwd~~~~~ 367 (435)
T 1p22_A 325 CGACLRVLEGHE-ELV--RCIRFDNKRIVSGAY-DGKIKVWDLVAAL 367 (435)
T ss_dssp TCCEEEEECCCS-SCE--EEEECCSSEEEEEET-TSCEEEEEHHHHT
T ss_pred CCCEEEEEeCCc-CcE--EEEEecCCEEEEEeC-CCcEEEEECCCCC
Confidence 999887664211 111 122235667777764 5888888887654
No 86
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.16 E-value=0.026 Score=59.56 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=104.3
Q ss_pred eeeeeecCEEEEEEcC---CCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe--CCEEEEEEcCC
Q 003001 89 GIDIALGKYVITLSSD---GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSID 163 (859)
Q Consensus 89 ~l~~~~~~~~V~Vs~~---g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~t 163 (859)
|+. ...++.+++++. ++.|+.+|+.+|+++=+..+..... +. + ...+ ++.+++.. ++.+..+|.++
T Consensus 25 Gl~-~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f--ge---G--i~~~-g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 25 GLV-YAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF--GE---G--LTLL-NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp EEE-ECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC--EE---E--EEEE-TTEEEEEETTCSEEEEEETTT
T ss_pred cEE-EeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc--eE---E--EEEe-CCEEEEEEecCCEEEEEECCC
Confidence 552 234357777642 4799999999999999888755332 11 1 1233 46888875 89999999999
Q ss_pred CcEEEEEecc-CcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecc-cCcc--CceEEecCcEEE
Q 003001 164 GEILWTRDFA-AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS-GGFV--GDVALVSSDTLV 239 (859)
Q Consensus 164 G~~~W~~~~~-~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~-~~~s--~~~~~v~~~~lv 239 (859)
++++-+.+.+ .... .+ ...++.+|+ +. |+ -++..+|++|.+......+... ..+. ....++ ++.++
T Consensus 96 ~~v~~~i~~g~~~g~---gl--t~Dg~~l~v-s~-gs--~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 96 LSNIKNFTHQMKDGW---GL--ATDGKILYG-SD-GT--SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp TEEEEEEECCSSSCC---EE--EECSSSEEE-EC-SS--SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CcEEEEEECCCCCeE---EE--EECCCEEEE-EC-CC--CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence 9999988765 2221 23 246677886 43 42 2699999999999988876542 2111 122233 34554
Q ss_pred EEECCCCeEEEEEeecCeeeEEEEeec
Q 003001 240 TLDTTRSILVTVSFKNRKIAFQETHLS 266 (859)
Q Consensus 240 ~~d~~~~~l~v~~L~sg~~~~~~~~l~ 266 (859)
+.....+.+.++|..++++ ...+++.
T Consensus 166 vn~~~~~~V~vID~~tg~V-~~~I~~~ 191 (266)
T 2iwa_A 166 ANIWQTDCIARISAKDGTL-LGWILLP 191 (266)
T ss_dssp EEETTSSEEEEEETTTCCE-EEEEECH
T ss_pred EecCCCCeEEEEECCCCcE-EEEEECC
Confidence 5555567899999999883 5666664
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.15 E-value=0.08 Score=57.21 Aligned_cols=196 Identities=10% Similarity=0.021 Sum_probs=112.1
Q ss_pred CEEEEEeCCCEEEEEECCCCcc-----ceEEEcCC----Ccceeeeeee----ecCEE-EEEEcCCCeEEEEeCCC----
Q 003001 54 KRVVVSTEENVIASLDLRHGEI-----FWRHVLGI----NDVVDGIDIA----LGKYV-ITLSSDGSTLRAWNLPD---- 115 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~i-----lWR~~l~~----~~~i~~l~~~----~~~~~-V~Vs~~g~~v~Ald~~t---- 115 (859)
..+++++.+|.|...|..+|+. ........ ...+..+... .++.. ++.++.++.|+.||..+
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 5788889999999999999986 33333221 1234433222 23344 55565667999999998
Q ss_pred --CcEeE-----EEec-------cCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEec---c---
Q 003001 116 --GQMVW-----ESFL-------RGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDF---A--- 173 (859)
Q Consensus 116 --G~llW-----~~~~-------~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~---~--- 173 (859)
++.+. +... ..... ..+ ....++ .++. .+|.+..+|..+|+.++.+.. .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~----~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFA----TSV----DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCC----CEE----EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred cccceeeccCcceeeeeeccccCCCCCc----eEE----EECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 76665 4432 11111 111 122245 4443 389999999999999998876 2
Q ss_pred CcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeee------------cccCccCceEEe-cCcEEEE
Q 003001 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAA------------FSGGFVGDVALV-SSDTLVT 240 (859)
Q Consensus 174 ~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~------------~~~~~s~~~~~v-~~~~lv~ 240 (859)
... +..+.....+..+++.+.++ ....+..+|+.+|+.+...... ....+. .+.+- .+.++++
T Consensus 233 ~~~--i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 233 SNS--IRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM-SLSFNDSGETLCS 308 (397)
T ss_dssp CCC--EEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE-EEEECSSSSEEEE
T ss_pred CCc--cceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccCCcEE-EEEECCCCCEEEE
Confidence 222 22232223444455444441 0136888999999988776431 011111 11121 3456666
Q ss_pred EECCCCeEEEEEeecCeeeEEEEe
Q 003001 241 LDTTRSILVTVSFKNRKIAFQETH 264 (859)
Q Consensus 241 ~d~~~~~l~v~~L~sg~~~~~~~~ 264 (859)
.. ..+.+++.++.+++ .+..+.
T Consensus 309 ~~-~dg~i~iwd~~~~~-~~~~~~ 330 (397)
T 1sq9_A 309 AG-WDGKLRFWDVKTKE-RITTLN 330 (397)
T ss_dssp EE-TTSEEEEEETTTTE-EEEEEE
T ss_pred Ee-CCCeEEEEEcCCCc-eeEEEe
Confidence 65 45889999998877 244443
No 88
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.15 E-value=0.15 Score=53.74 Aligned_cols=196 Identities=12% Similarity=0.157 Sum_probs=108.1
Q ss_pred CCEEEE-EeC---CCEEEEEECCCCccceEEEcCCCcceeeeeeeec---CEEEEEEcCCCeEEEEeCCCCc-EeEEEec
Q 003001 53 RKRVVV-STE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALG---KYVITLSSDGSTLRAWNLPDGQ-MVWESFL 124 (859)
Q Consensus 53 ~~~Vyv-at~---~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~---~~~V~Vs~~g~~v~Ald~~tG~-llW~~~~ 124 (859)
++.+++ ++. +|.|.-.|..+|+.......+....+..+..... +..++.++.++.++.||..+|+ .+.....
T Consensus 30 ~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 109 (357)
T 3i2n_A 30 SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG 109 (357)
T ss_dssp SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe
Confidence 445554 444 8999999999998866655544333433321122 3455556666799999999998 7777765
Q ss_pred cCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCc-EEEEEeccCcc--eeeeeEEE---eecCCeEEEEEe
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGE-ILWTRDFAAES--VEVQQVIQ---LDESDQIYVVGY 196 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~-~~W~~~~~~~~--~~~~~~v~---~~~~~~vyvv~~ 196 (859)
..... ......+ ......++..++ . .+|.+...|..+++ +.......... .....+.. -..++..++.+.
T Consensus 110 ~~~~v-~~~~~~~-~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 110 HKEII-NAIDGIG-GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY 187 (357)
T ss_dssp CSSCE-EEEEEES-GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred cccce-EEEeecc-ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence 44332 1111100 000112343444 3 48999999999997 66666543221 11112210 012344444444
Q ss_pred cCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe----cCcEEEEEECCCCeEEEEEeecCe
Q 003001 197 AGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV----SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v----~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+ .+..+|..+++..+.... ...+.. +.+- .++.+++.. ..+.+++.++.++.
T Consensus 188 ~d~---~i~i~d~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 188 DNG---DIKLFDLRNMALRWETNI--KNGVCS-LEFDRKDISMNKLVATS-LEGKFHVFDMRTQH 245 (357)
T ss_dssp TTS---EEEEEETTTTEEEEEEEC--SSCEEE-EEESCSSSSCCEEEEEE-STTEEEEEEEEEEE
T ss_pred cCC---eEEEEECccCceeeecCC--CCceEE-EEcCCCCCCCCEEEEEC-CCCeEEEEeCcCCC
Confidence 433 588899999998765422 222211 1111 235566655 45889999988765
No 89
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.13 E-value=0.39 Score=51.31 Aligned_cols=190 Identities=11% Similarity=-0.003 Sum_probs=109.4
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeE----EEeccC
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVW----ESFLRG 126 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW----~~~~~~ 126 (859)
.++..+++++.+|.|.-.|..+|+.+........ .+..+....++..++.++.++.++.||..++.... +.....
T Consensus 65 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~ 143 (340)
T 1got_B 65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC
Confidence 3567799999999999999999998877665433 23222222234455546667799999998874322 222222
Q ss_pred ccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEE
Q 003001 127 SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
... ..+ ....++.++.. .||.+...|..+|+..-++....... ..+... .++..++.+...+ .+.
T Consensus 144 ~~v----~~~----~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v--~~~~~~-~~~~~l~sg~~d~---~v~ 209 (340)
T 1got_B 144 GYL----SCC----RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV--MSLSLA-PDTRLFVSGACDA---SAK 209 (340)
T ss_dssp SCE----EEE----EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEEC-TTSSEEEEEETTS---CEE
T ss_pred ccE----EEE----EECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCce--EEEEEC-CCCCEEEEEeCCC---cEE
Confidence 111 111 11114554444 48999999999999887775433322 222212 2344444443332 377
Q ss_pred EEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 206 QINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+|..+|+........ ...+..-++...++.+++... .+.+++-++.+++
T Consensus 210 ~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~-d~~v~iwd~~~~~ 259 (340)
T 1got_B 210 LWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSD-DATCRLFDLRADQ 259 (340)
T ss_dssp EEETTTCSEEEEECCC-SSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTE
T ss_pred EEECCCCeeEEEEcCC-cCCEEEEEEcCCCCEEEEEcC-CCcEEEEECCCCc
Confidence 7899999877554311 111111111113456666654 5789999998876
No 90
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.11 E-value=0.029 Score=59.00 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=80.8
Q ss_pred cCCCEEEEEeC-CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc--
Q 003001 51 TGRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS-- 127 (859)
Q Consensus 51 ~~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~-- 127 (859)
..+++||+++. ++.+..+|++|++++=+...+..+ -++ ..+++.++++...++|+-+|++|++++=+..+...
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~ 169 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE 169 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--CCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--eEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc
Confidence 35789999986 689999999999999998886541 133 34556777776567899999999999877776421
Q ss_pred cccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEecc
Q 003001 128 KHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~ 173 (859)
.. ..+.-+ ... ++.+++. .++.|.++|+++|+++=..+.+
T Consensus 170 ~~-~~lNEL----e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 170 EL-PELNEL----EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp EC-CCEEEE----EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred cc-ccccee----EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence 11 000001 112 5788885 3889999999999987666553
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.024 Score=58.90 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=94.2
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|...| .++..-.........+..+....++. ++.++.++.++.||..+|+.+.+........ .
T Consensus 154 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-~ 229 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFV-Y 229 (313)
T ss_dssp TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCE-E
T ss_pred CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceE-E
Confidence 477899999999999999 45554444432333343442233444 4446667799999999999999987654432 1
Q ss_pred CcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
...+ ..++.++.. .+|.+...|..+|+............ ..+.. ..++.+++.+.+| .+..+|..
T Consensus 230 ~~~~-------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i--~~~~~-~~~~~~~~~~~dg----~i~iw~~~ 295 (313)
T 3odt_A 230 CIKL-------LPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI--WSVDC-MSNGDIIVGSSDN----LVRIFSQE 295 (313)
T ss_dssp EEEE-------CTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCE--EEEEE-CTTSCEEEEETTS----CEEEEESC
T ss_pred EEEE-------ecCCCEEEEecCCEEEEEECCCCceeEEEeccCceE--EEEEE-ccCCCEEEEeCCC----cEEEEeCC
Confidence 1111 224455554 49999999999999999887664332 22321 2344555544444 37888988
Q ss_pred CCceeeeee
Q 003001 211 NGELLNHET 219 (859)
Q Consensus 211 tG~~~w~~~ 219 (859)
+|+...+..
T Consensus 296 ~~~~~~~~~ 304 (313)
T 3odt_A 296 KSRWASEDE 304 (313)
T ss_dssp GGGCCC---
T ss_pred CCceeehhh
Confidence 888776553
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.09 E-value=0.39 Score=50.59 Aligned_cols=153 Identities=10% Similarity=-0.009 Sum_probs=93.0
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCC----cceeeeeeeec----CEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----DVVDGIDIALG----KYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~----~~i~~l~~~~~----~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
+..+++++.++.|.-.|..+|+.+.....-.. ..+..+..... +..++.++.++.|+.||..+|+.+.....
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 113 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG 113 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES
T ss_pred CceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC
Confidence 55688888889999999999988766542111 12332221222 34566566678999999999999998875
Q ss_pred cCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEecc-CcceeeeeEEEeecCCeEEEEEecCCce
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFA-AESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~v~~~~~~~vyvv~~~g~~~ 201 (859)
..... ...... .. ++..++ . .+|.+...|..+|+........ .....+..+.....+..++..+.+|
T Consensus 114 ~~~~i-~~~~~~-----~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 183 (366)
T 3k26_A 114 HGNAI-NELKFH-----PR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH--- 183 (366)
T ss_dssp CCSCE-EEEEEC-----SS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS---
T ss_pred CCCcE-EEEEEC-----CC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCC---
Confidence 44332 111111 11 344444 4 4899999999999988887321 1111122332223444555544444
Q ss_pred eEEEEEEcCCCceee
Q 003001 202 FHAYQINAMNGELLN 216 (859)
Q Consensus 202 ~~v~ald~~tG~~~w 216 (859)
.+..+|..+|+...
T Consensus 184 -~i~i~d~~~~~~~~ 197 (366)
T 3k26_A 184 -SLKLWRINSKRMMN 197 (366)
T ss_dssp -CEEEEESCSHHHHH
T ss_pred -CEEEEECCCCcccc
Confidence 37888999887664
No 93
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.08 E-value=0.08 Score=58.91 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=91.3
Q ss_pred ccCCCEEEEEe----------CCCEEEEEECCCCccceEEEcCCCc------ceeeeeeeecCEEEEEEcC--CCeEEEE
Q 003001 50 KTGRKRVVVST----------EENVIASLDLRHGEIFWRHVLGIND------VVDGIDIALGKYVITLSSD--GSTLRAW 111 (859)
Q Consensus 50 ~~~~~~Vyvat----------~~g~l~ALd~~tG~ilWR~~l~~~~------~i~~l~~~~~~~~V~Vs~~--g~~v~Al 111 (859)
+++++.+|+++ +.+.|..+|++|++++-+..++... ...++....++..++|+.. ++.|..+
T Consensus 86 spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVI 165 (386)
T 3sjl_D 86 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 165 (386)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 45677899997 3678999999999999998875410 1112322335556666642 5789999
Q ss_pred eCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCC-CcEEEEEecc-Ccceeeee--EEEee
Q 003001 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSID-GEILWTRDFA-AESVEVQQ--VIQLD 186 (859)
Q Consensus 112 d~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~t-G~~~W~~~~~-~~~~~~~~--~v~~~ 186 (859)
|..+++++-+..+..... ..+ .. ....+.. .||++..++..+ |++.=+.... .....+.. .....
T Consensus 166 D~~t~~vv~tI~v~g~~~-----~~P----~g-~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~ 235 (386)
T 3sjl_D 166 DLEGKAFKRMLDVPDCYH-----IFP----TA-PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 235 (386)
T ss_dssp ETTTTEEEEEEECCSEEE-----EEE----EE-TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred ECCCCcEEEEEECCCcce-----eec----CC-CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc
Confidence 999999998887654211 112 11 2333333 588888888876 8763111100 01100110 11112
Q ss_pred cCCeEEEEEecCCceeEEEEEEcCCCce
Q 003001 187 ESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (859)
Q Consensus 187 ~~~~vyvv~~~g~~~~~v~ald~~tG~~ 214 (859)
.++.++++++.| +++.+|..++.+
T Consensus 236 ~dG~~~~vs~~g----~V~v~d~~~~~~ 259 (386)
T 3sjl_D 236 KAGRLVWPTYTG----KIHQIDLSSGDA 259 (386)
T ss_dssp TTTEEEEEBTTS----EEEEEECTTSSC
T ss_pred CCCcEEEEeCCC----EEEEEECCCCcc
Confidence 456666567654 599999987764
No 94
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.074 Score=55.05 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=109.0
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeee-cCEEEEEEcCCCeEEEEeCCCCcEeEEEec-cCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFL-RGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~-~~~~l 129 (859)
+++.+++++.+|.|...| +++..+....... .+..+.... .+..++.++.++.++.|| .++..-.... .....
T Consensus 113 ~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i 187 (313)
T 3odt_A 113 QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVV 187 (313)
T ss_dssp ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCE
T ss_pred cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccE
Confidence 367899999999999999 7888887765433 222221122 444555566667999999 5666655554 22111
Q ss_pred cCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
..+ ....++.+++. .+|.+..+|..+|+.+.++....... ..+.. ..++.++..+.+| .+..+|
T Consensus 188 ----~~~----~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i--~~~~~-~~~~~l~~~~~dg----~v~iwd 252 (313)
T 3odt_A 188 ----RHL----AVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFV--YCIKL-LPNGDIVSCGEDR----TVRIWS 252 (313)
T ss_dssp ----EEE----EEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEEE-CTTSCEEEEETTS----EEEEEC
T ss_pred ----EEE----EEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceE--EEEEE-ecCCCEEEEecCC----EEEEEE
Confidence 111 11224554444 49999999999999999887544332 22321 2334555444444 588899
Q ss_pred cCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+|+.+........ .+. .+.+..++.+++.. ..+.+++.++.+++
T Consensus 253 ~~~~~~~~~~~~~~~-~i~-~~~~~~~~~~~~~~-~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 253 KENGSLKQVITLPAI-SIW-SVDCMSNGDIIVGS-SDNLVRIFSQEKSR 298 (313)
T ss_dssp TTTCCEEEEEECSSS-CEE-EEEECTTSCEEEEE-TTSCEEEEESCGGG
T ss_pred CCCCceeEEEeccCc-eEE-EEEEccCCCEEEEe-CCCcEEEEeCCCCc
Confidence 999998877643211 111 12222222244444 35789999988876
No 95
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.02 E-value=0.39 Score=49.32 Aligned_cols=183 Identities=12% Similarity=0.082 Sum_probs=100.0
Q ss_pred CCEEEEEeC-CCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++.+|+++. .+.|..+|+. |+.. +..++.. ..+.++. ...++.++++. .++.|+.+|+. |+.. +........
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~ 104 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLI-VSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDS 104 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEE-ECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTC
T ss_pred CCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEE-ECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCC
Confidence 677999885 6899999998 7754 3444322 1222331 23344455544 35689999988 8764 233221110
Q ss_pred cCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
... ....+.++.+++.. ++.|+++|.+ |+... +..+.....+..+. ...++.+|+....++ .+..+
T Consensus 105 --~~~----~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~---~i~~~ 172 (300)
T 2qc5_A 105 --GPY----GITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDLPNKGSYPAFIT-LGSDNALWFTENQNN---SIGRI 172 (300)
T ss_dssp --CEE----EEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEE-ECTTSSEEEEETTTT---EEEEE
T ss_pred --CCc----cceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccCCCCCCCceeEE-ECCCCCEEEEecCCC---eEEEE
Confidence 111 11334467788864 7899999987 87762 22332222243443 234567887665433 48888
Q ss_pred EcCCCceeeeeeeecccCccC-ceEEec-CcEEEEEECCCCeEEEEEeecCe
Q 003001 208 NAMNGELLNHETAAFSGGFVG-DVALVS-SDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~-~~~~v~-~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|. +|+... . ..+..... ..+.++ ++.+++.+...+.+.+.+. ++.
T Consensus 173 ~~-~g~~~~-~--~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 173 TN-TGKLEE-Y--PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp CT-TCCEEE-E--ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CC-CCcEEE-e--eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 98 777652 2 22322222 122232 3334455555566777776 554
No 96
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.01 E-value=0.0042 Score=67.82 Aligned_cols=193 Identities=13% Similarity=0.164 Sum_probs=102.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcC--C-CcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG--I-NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~--~-~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++++++++.+|.|.-.|..+|+......+. . ...+..+....++..++.++.++.|+.||..+|+.+..........
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 677889999999998899888765433221 1 1234333222233444445556799999999999999887654432
Q ss_pred cCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
....+. .+.+..++.. .||.+...|..+|++.-..........+..+.....++.+++.+...+ .+..+|
T Consensus 185 -~~v~~s-----~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~---~i~~wd 255 (357)
T 4g56_B 185 -NCVAAC-----PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG---NVSLVN 255 (357)
T ss_dssp -EEEEEC-----TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS---CEEEEE
T ss_pred -EEEEEc-----cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc---ceeEEE
Confidence 111111 1212233333 489999999999886654433322221223322224455555554432 377789
Q ss_pred cCCCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+.+|+.+....... ..+. .+.+- +..+++.... .+.+++-++.+++
T Consensus 256 ~~~~~~~~~~~~~~-~~v~-~l~~sp~~~~~lasgs~-D~~i~iwd~~~~~ 303 (357)
T 4g56_B 256 IKNPDSAQTSAVHS-QNIT-GLAYSYHSSPFLASISE-DCTVAVLDADFSE 303 (357)
T ss_dssp SSCGGGCEEECCCS-SCEE-EEEECSSSSCCEEEEET-TSCEEEECTTSCE
T ss_pred CCCCcEeEEEeccc-eeEE-EEEEcCCCCCEEEEEeC-CCEEEEEECCCCc
Confidence 99998876553211 1111 11121 2345555543 4778888888776
No 97
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.99 E-value=0.13 Score=54.18 Aligned_cols=196 Identities=9% Similarity=0.086 Sum_probs=107.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCc-cceEEEcCCCcceeeee------eeecCEEEEEEcCCCeEEEEeCCCCc-EeEEEec
Q 003001 53 RKRVVVSTEENVIASLDLRHGE-IFWRHVLGINDVVDGID------IALGKYVITLSSDGSTLRAWNLPDGQ-MVWESFL 124 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~-ilWR~~l~~~~~i~~l~------~~~~~~~V~Vs~~g~~v~Ald~~tG~-llW~~~~ 124 (859)
++.+++++.+|.|.-.|..+|+ .+....-. ...+..+. ...++..++.++.++.++.||..+|+ .+.....
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 158 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP 158 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEec-ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence 4679999999999999999998 66554422 22232221 11233345545566799999999997 6666654
Q ss_pred cCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEee---cCCeEEEEEecCC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLD---ESDQIYVVGYAGS 199 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~---~~~~vyvv~~~g~ 199 (859)
...........+..+.....++..++ . .+|.+..+|..+|+..+........ ..+.... .++.+++.+.+|
T Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~l~~~~~dg- 234 (357)
T 3i2n_A 159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGV---CSLEFDRKDISMNKLVATSLEG- 234 (357)
T ss_dssp CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCE---EEEEESCSSSSCCEEEEEESTT-
T ss_pred cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCce---EEEEcCCCCCCCCEEEEECCCC-
Confidence 33211001111100000112444444 3 4899999999999998876554322 2232222 344444433333
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccC---ceEEec-Cc-EEEEEECCCCeEEEEEeecCe
Q 003001 200 SQFHAYQINAMNGELLNHETAAFSGGFVG---DVALVS-SD-TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~---~~~~v~-~~-~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+..+|..+++............-.. .+.+-. +. ++++.. ..|.+++-++.++.
T Consensus 235 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 235 ---KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG-GAGGLHLWKYEYPI 293 (357)
T ss_dssp ---EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEEEECCS
T ss_pred ---eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe-CCCcEEEeecCCCc
Confidence 47778888887765553211111111 111212 22 455555 35788888888765
No 98
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.97 E-value=0.52 Score=50.01 Aligned_cols=199 Identities=10% Similarity=0.110 Sum_probs=96.7
Q ss_pred CCEEEEEeC---CCEEEEEECCCCccceEEEcC-CCcceeeeeeeecCEEEEEEc-CCCeEEEEeC-CCCcEeEEEeccC
Q 003001 53 RKRVVVSTE---ENVIASLDLRHGEIFWRHVLG-INDVVDGIDIALGKYVITLSS-DGSTLRAWNL-PDGQMVWESFLRG 126 (859)
Q Consensus 53 ~~~Vyvat~---~g~l~ALd~~tG~ilWR~~l~-~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~-~tG~llW~~~~~~ 126 (859)
++++|+++. ++.|..+|..+|+..-...+. .......+....++..++++. .++.++.||. .+|.+........
T Consensus 50 dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~ 129 (347)
T 3hfq_A 50 KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH 129 (347)
T ss_dssp TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec
Confidence 455888876 488999999888742222211 111122332223344455444 5678999998 4666554333321
Q ss_pred ccccCCc----ccccccccccCCCeEEEEe--CCEEEEEEcC-CCcEEEEE--eccCcceeeeeEEEeecCCeEEEEEec
Q 003001 127 SKHSKPL----LLVPTNLKVDKDSLILVSS--KGCLHAVSSI-DGEILWTR--DFAAESVEVQQVIQLDESDQIYVVGYA 197 (859)
Q Consensus 127 ~~ls~~~----~~~~~~~~~~~~~~VvV~~--~g~l~ald~~-tG~~~W~~--~~~~~~~~~~~~v~~~~~~~vyvv~~~ 197 (859)
... .+. ...+.......++.+++.. ++.+..++.. +|+..... ....+ ..+..+..+..+..+|+.+..
T Consensus 130 ~~~-~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~p~~~~~spdg~~l~v~~~~ 207 (347)
T 3hfq_A 130 SGH-GPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-FGPRHLVFSPDGQYAFLAGEL 207 (347)
T ss_dssp CCC-CSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-CCEEEEEECTTSSEEEEEETT
T ss_pred CCC-CCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-CCCceEEECCCCCEEEEEeCC
Confidence 100 000 0000001222245566543 6788888877 67654322 22211 123344333344457765543
Q ss_pred CCceeEEEEEEcCCCceeeeeeeec-ccCccC-----ceEEe-cCcEEEEEECCCCeEEEEEee
Q 003001 198 GSSQFHAYQINAMNGELLNHETAAF-SGGFVG-----DVALV-SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 198 g~~~~~v~ald~~tG~~~w~~~v~~-~~~~s~-----~~~~v-~~~~lv~~d~~~~~l~v~~L~ 254 (859)
+ ..+.++.++..+|+......+.. +.+..+ .+.+- .+..+++.+...+.+.+.++.
T Consensus 208 ~-~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 208 S-SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp T-TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred C-CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 3 35666767766787643333222 222111 12221 334454555556778888876
No 99
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.96 E-value=0.58 Score=55.90 Aligned_cols=147 Identities=10% Similarity=-0.022 Sum_probs=82.8
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCe-EEEE-eCCEEEEEEcCCCcEEEEEec
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSL-ILVS-SKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~-VvV~-~~g~l~ald~~tG~~~W~~~~ 172 (859)
++..+++++.++.|+-||..+|+.+.+........ ....+ ..++. +++. .+|.+...|..+|+...+...
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~-------s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 95 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPV-RAGKF-------IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEEE-------EGGGTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcE-EEEEE-------eCCCCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 33455556666799999999999999888654432 11111 11343 4443 489999999999999988865
Q ss_pred cCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEE
Q 003001 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVT 250 (859)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v 250 (859)
..... ..+.....+..++..+.+| .+..+|..+|...-+........+.. +.+- +++.+++.. ..+.+.+
T Consensus 96 ~~~~v--~~~~~s~~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~-~dg~v~v 167 (814)
T 3mkq_A 96 HPDYI--RSIAVHPTKPYVLSGSDDL----TVKLWNWENNWALEQTFEGHEHFVMC-VAFNPKDPSTFASGC-LDRTVKV 167 (814)
T ss_dssp CSSCE--EEEEECSSSSEEEEEETTS----EEEEEEGGGTSEEEEEEECCSSCEEE-EEEETTEEEEEEEEE-TTSEEEE
T ss_pred CCCCE--EEEEEeCCCCEEEEEcCCC----EEEEEECCCCceEEEEEcCCCCcEEE-EEEEcCCCCEEEEEe-CCCeEEE
Confidence 43332 2222223344444433333 47778888773332221111111111 1111 233555554 3578888
Q ss_pred EEeecCe
Q 003001 251 VSFKNRK 257 (859)
Q Consensus 251 ~~L~sg~ 257 (859)
.++.++.
T Consensus 168 wd~~~~~ 174 (814)
T 3mkq_A 168 WSLGQST 174 (814)
T ss_dssp EETTCSS
T ss_pred EECCCCc
Confidence 8887765
No 100
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.93 E-value=0.42 Score=49.05 Aligned_cols=183 Identities=11% Similarity=0.148 Sum_probs=98.3
Q ss_pred CCEEEEEeC-CCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++.+|+++. .+.|..+|+. |+.. +..++.. ..+.++. ...++.++++. .++.|+.||+. |+.. ....... .
T Consensus 25 ~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~-~ 98 (299)
T 2z2n_A 25 KGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLT-ISSDGEVWFTENAANKIGRITKK-GIIK-EYTLPNP-D 98 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEE-ECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSST-T
T ss_pred CCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEE-ECCCCCEEEeCCCCCeEEEECCC-CcEE-EEeCCCc-C
Confidence 677999987 6899999998 7643 2333322 1223331 22334444444 35689999986 6542 2222211 1
Q ss_pred cCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
.... ....+.++.+++.. ++.+.++|. +|+.... ..+.....+..+. ...++.+|+....++ .+..+
T Consensus 99 -~~~~----~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~-~~~~~~~~~~~i~-~~~~g~l~v~~~~~~---~i~~~ 167 (299)
T 2z2n_A 99 -SAPY----GITEGPNGDIWFTEMNGNRIGRITD-DGKIREY-ELPNKGSYPSFIT-LGSDNALWFTENQNN---AIGRI 167 (299)
T ss_dssp -CCEE----EEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE-ECTTSCEEEEETTTT---EEEEE
T ss_pred -CCce----eeEECCCCCEEEEecCCceEEEECC-CCCEEEe-cCCCCCCCCceEE-EcCCCCEEEEeCCCC---EEEEE
Confidence 0111 11334457788854 789999998 7876532 2222112233343 234678887664433 58889
Q ss_pred EcCCCceeeeeeeecccCccC-ceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 208 NAMNGELLNHETAAFSGGFVG-DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~-~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+ +|+...- ..+..... ..+.+ .++.+++.+...+.+...+. ++.
T Consensus 168 ~~-~g~~~~~---~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 168 TE-SGDITEF---KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp CT-TCCEEEE---ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred cC-CCcEEEe---eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 98 8876532 12222222 12222 22334455555567877777 665
No 101
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.93 E-value=0.32 Score=52.52 Aligned_cols=191 Identities=10% Similarity=0.060 Sum_probs=104.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-----------------------------------------------
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----------------------------------------------- 84 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~----------------------------------------------- 84 (859)
++.+++.++.+|.|.-.|..+|+..-.......
T Consensus 75 d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~ 154 (354)
T 2pbi_B 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT 154 (354)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC
Confidence 466788889999999999888875443332110
Q ss_pred cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcC
Q 003001 85 DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSI 162 (859)
Q Consensus 85 ~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~ 162 (859)
..+..+....++..++.++.++.++.||..+|+.+-......... ..+.. ....++..++ . .||.+...|..
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v----~~~~~--~~~~~g~~l~sgs~Dg~v~~wd~~ 228 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV----LCLDL--APSETGNTFVSGGCDKKAMVWDMR 228 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE----EEEEE--CCCSSCCEEEEEETTSCEEEEETT
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe----EEEEE--EeCCCCCEEEEEeCCCeEEEEECC
Confidence 001111111122233335556799999999999887776544322 11110 1111344444 3 49999999999
Q ss_pred CCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccC-ceE-Ee-cCcEEE
Q 003001 163 DGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-DVA-LV-SSDTLV 239 (859)
Q Consensus 163 tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~-~v-~~~~lv 239 (859)
+|+.+-.+....... ..+.....+..++..+.+| .+..+|+.+++.+..... .....+ .++ +- .+.+++
T Consensus 229 ~~~~~~~~~~h~~~v--~~v~~~p~~~~l~s~s~D~----~v~lwd~~~~~~~~~~~~--~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 229 SGQCVQAFETHESDV--NSVRYYPSGDAFASGSDDA----TCRLYDLRADREVAIYSK--ESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp TCCEEEEECCCSSCE--EEEEECTTSSEEEEEETTS----CEEEEETTTTEEEEEECC--TTCCSCEEEEEECTTSSEEE
T ss_pred CCcEEEEecCCCCCe--EEEEEeCCCCEEEEEeCCC----eEEEEECCCCcEEEEEcC--CCcccceeEEEEeCCCCEEE
Confidence 999877765433322 2222222344444444444 377789888866543321 111111 111 11 344665
Q ss_pred EEECCCCeEEEEEeecCe
Q 003001 240 TLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 240 ~~d~~~~~l~v~~L~sg~ 257 (859)
+.. ..+.+++-++.+++
T Consensus 301 ~g~-~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 301 AGY-NDYTINVWDVLKGS 317 (354)
T ss_dssp EEE-TTSCEEEEETTTCS
T ss_pred EEE-CCCcEEEEECCCCc
Confidence 555 34778888887765
No 102
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.92 E-value=0.052 Score=57.15 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=101.1
Q ss_pred CEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEec
Q 003001 96 KYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 96 ~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~ 172 (859)
++.++++ +..+.|+.+|+++|+++-+. +.......+ + ... ++.++++. ++.++.+|+++++++=+.+.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeG--i-----t~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEG--L-----ASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEE--E-----EEC-SSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeE--E-----EEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 4566664 45568999999999999998 665433101 1 223 46788875 99999999999999999887
Q ss_pred cCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecc-cCcc--CceEEecCcEEEEEECCCCeEE
Q 003001 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS-GGFV--GDVALVSSDTLVTLDTTRSILV 249 (859)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~-~~~s--~~~~~v~~~~lv~~d~~~~~l~ 249 (859)
+.... .+. ..++.+|+.. |+. ++..+|++|++++....+... ..+. ...-++++ .+++.....+.+.
T Consensus 135 ~~eGw---GLt--~Dg~~L~vSd--Gs~--~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG-~lyanvw~s~~I~ 204 (268)
T 3nok_A 135 SGEGW---GLC--YWNGKLVRSD--GGT--MLTFHEPDGFALVGAVQVKLRGQPVELINELECANG-VIYANIWHSSDVL 204 (268)
T ss_dssp SSCCC---CEE--EETTEEEEEC--SSS--EEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTCSEEE
T ss_pred CCcee---EEe--cCCCEEEEEC--CCC--EEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC-EEEEEECCCCeEE
Confidence 54322 232 3567777643 422 689999999999988876542 2221 11223343 4444444567889
Q ss_pred EEEeecCeeeEEEEeecCc
Q 003001 250 TVSFKNRKIAFQETHLSNL 268 (859)
Q Consensus 250 v~~L~sg~~~~~~~~l~~l 268 (859)
++|..+|++ ...+.++.|
T Consensus 205 vIDp~TG~V-~~~Idl~~L 222 (268)
T 3nok_A 205 EIDPATGTV-VGVIDASAL 222 (268)
T ss_dssp EECTTTCBE-EEEEECHHH
T ss_pred EEeCCCCcE-EEEEECCCC
Confidence 999999883 566666543
No 103
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=96.88 E-value=0.76 Score=50.49 Aligned_cols=190 Identities=9% Similarity=-0.068 Sum_probs=106.4
Q ss_pred cCCCEEEEEeC-C-C---EEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc----------CCCeEEEEeCCC
Q 003001 51 TGRKRVVVSTE-E-N---VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNLPD 115 (859)
Q Consensus 51 ~~~~~Vyvat~-~-g---~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~----------~g~~v~Ald~~t 115 (859)
.+..++|+++. . + .|..+|+.+|+++=+...+.. . ++...-++..++++. .++.|..||+.+
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~--p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC--C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 45678999986 3 3 889999999999755444322 1 332334555666654 245799999999
Q ss_pred CcEeEEEeccCccccCCcccccccccccC-CCeEEEEe---CCEEEEEEcCCCcEEEE-EeccCcceeeeeEEEeecCCe
Q 003001 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQ 190 (859)
Q Consensus 116 G~llW~~~~~~~~ls~~~~~~~~~~~~~~-~~~VvV~~---~g~l~ald~~tG~~~W~-~~~~~~~~~~~~~v~~~~~~~ 190 (859)
++++-+..+..+.-... ...+....... ++.+++.. ++.|..+| ++|+++-+ .+.+... .+ ...+..
T Consensus 107 ~~~~~~i~~~~~~~~~~-g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~----~~--~~~~~~ 178 (373)
T 2mad_H 107 FLPIADIELPDAPRFDV-GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCY----HI--HPGAPS 178 (373)
T ss_pred CcEEEEEECCCcccccc-CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceE----EE--EeCCCc
Confidence 99998887751100000 00000012222 34677653 47899999 99999876 5544221 11 123444
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCce-----EEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDV-----ALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~-----~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.|+.....+ ++..+|. +|+..+........ ..... .+. .++.+++.. ..+.++++++.++.
T Consensus 179 ~~~~~~~dg---~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~ 245 (373)
T 2mad_H 179 TFYLLCAQG---GLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAG 245 (373)
T ss_pred eEEEEcCCC---CEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCc
Confidence 554322222 4888999 99988654311100 11111 111 223333333 45789999987654
No 104
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.87 E-value=0.12 Score=53.63 Aligned_cols=155 Identities=9% Similarity=0.047 Sum_probs=103.8
Q ss_pred CEEEEEEcCC---CeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEE
Q 003001 96 KYVITLSSDG---STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 96 ~~~V~Vs~~g---~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~ 170 (859)
++.+++|+.. ..|+.+|+++|+++=+..+.......+ + ... ++.++++. ++.++.+|.++++++=+.
T Consensus 30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeG--i-----~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAG--I-----VAW-RDRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEE--E-----EEE-TTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeE--E-----EEe-CCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 3567776432 489999999999998888766543111 1 223 57888875 999999999999999999
Q ss_pred eccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecc-cCcc--CceEEecCcEEEEEECCCCe
Q 003001 171 DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS-GGFV--GDVALVSSDTLVTLDTTRSI 247 (859)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~-~~~s--~~~~~v~~~~lv~~d~~~~~ 247 (859)
+.+.... .+. ..++.+|+ + +|+. ++..+|++|.+++....+... ..+. ...-.+++.++ +-.-....
T Consensus 102 ~~~~~Gw---glt--~dg~~L~v-S-dgs~--~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~ly-anvw~s~~ 171 (243)
T 3mbr_X 102 RYPGEGW---ALT--SDDSHLYM-S-DGTA--VIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELL-ANVWLTSR 171 (243)
T ss_dssp ECSSCCC---EEE--ECSSCEEE-E-CSSS--EEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEE-EEETTTTE
T ss_pred eCCCCce---EEe--eCCCEEEE-E-CCCC--eEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEE-EEECCCCe
Confidence 8764332 332 35667776 4 3432 689999999999988877542 1111 11223344333 44444578
Q ss_pred EEEEEeecCeeeEEEEeecCcC
Q 003001 248 LVTVSFKNRKIAFQETHLSNLG 269 (859)
Q Consensus 248 l~v~~L~sg~~~~~~~~l~~l~ 269 (859)
+.++|..+|++ ...+.++.|.
T Consensus 172 I~vIDp~tG~V-~~~idl~~l~ 192 (243)
T 3mbr_X 172 IARIDPASGKV-VAWIDLQALV 192 (243)
T ss_dssp EEEECTTTCBE-EEEEECGGGS
T ss_pred EEEEECCCCCE-EEEEECCcCc
Confidence 99999999983 6777776654
No 105
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.84 E-value=0.096 Score=56.71 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=91.3
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeee-e-cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-L-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~-~-~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++..+++++.+|.|.-.|.++|+.+-...-.. ..+..+... . .+..++.++.++.|+.||..+|+.+-.........
T Consensus 165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v 243 (354)
T 2pbi_B 165 SDMQILTASGDGTCALWDVESGQLLQSFHGHG-ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243 (354)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCe
Confidence 46679999999999999999998765543222 122222111 1 23355546667799999999999887766544322
Q ss_pred cCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
....+ ..++..++ . .||.+...|..+++..-.+...........+..+..+..++ .+...+ .+..+
T Consensus 244 -~~v~~-------~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-~g~~d~---~i~vw 311 (354)
T 2pbi_B 244 -NSVRY-------YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF-AGYNDY---TINVW 311 (354)
T ss_dssp -EEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE-EEETTS---CEEEE
T ss_pred -EEEEE-------eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEE-EEECCC---cEEEE
Confidence 11111 11344444 3 48999999999988765554332211122222222334444 444433 37788
Q ss_pred EcCCCceeeee
Q 003001 208 NAMNGELLNHE 218 (859)
Q Consensus 208 d~~tG~~~w~~ 218 (859)
|..+|+.+-..
T Consensus 312 d~~~~~~~~~l 322 (354)
T 2pbi_B 312 DVLKGSRVSIL 322 (354)
T ss_dssp ETTTCSEEEEE
T ss_pred ECCCCceEEEE
Confidence 99999876443
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.49 Score=50.16 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=100.2
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeec--CEEEEEEcCCCeEEEEeCCCCc--EeEEEeccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQ--MVWESFLRG 126 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~--~~~V~Vs~~g~~v~Ald~~tG~--llW~~~~~~ 126 (859)
+++.+++++.+|.|.-.|..++...-...+... ..+..+..... +..++.++.++.|+.||..+|+ .+.......
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 101 (379)
T 3jrp_A 22 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 101 (379)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC
Confidence 466788889999998888874333222333322 23333322111 4455545556799999999997 555554333
Q ss_pred ccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcE--EEEEeccCcceeeeeEEEeec------------CCe
Q 003001 127 SKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEI--LWTRDFAAESVEVQQVIQLDE------------SDQ 190 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~v~~~~------------~~~ 190 (859)
... ......+ +..+..++ . .+|.+..+|..++.. .......... ...+..... ++.
T Consensus 102 ~~v-~~~~~~~-----~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T 3jrp_A 102 ASV-NSVQWAP-----HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG--VNSASWAPATIEEDGEHNGTKESR 173 (379)
T ss_dssp SCE-EEEEECC-----GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC--EEEEEECCCC----------CTTC
T ss_pred cce-EEEEeCC-----CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc--eEEEEEcCccccccccccCCCCCC
Confidence 222 1111111 11133444 3 489999999988843 2222222111 112221121 234
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccC-ceEEe--c---CcEEEEEECCCCeEEEEEeecCe
Q 003001 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALV--S---SDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v--~---~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.++.+...+ .+..+|..+++..+.........-.. .++.. . +.++++... .+.+.+.++.++.
T Consensus 174 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 174 KFVTGGADN---LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQ 242 (379)
T ss_dssp EEEEEETTS---CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-TSCEEEEEESSTT
T ss_pred EEEEEeCCC---eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-CCEEEEEeCCCCC
Confidence 444443332 37777888887666543222211111 12222 2 456666664 5789999988764
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.81 E-value=0.079 Score=56.09 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=107.9
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeee--eecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI--ALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~--~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
+++.+++++.+|.|...|.++|+.+........ +..+.. ..++..++.++.++.++.||..+|+.+..........
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAP--VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY 174 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--EEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCceeeccccCc--eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce
Confidence 566799999999999999999998775544333 443322 2344455556667799999999999999988765432
Q ss_pred cCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEe-ecC----CeEEEEEecCCceeE
Q 003001 130 SKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQL-DES----DQIYVVGYAGSSQFH 203 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~-~~~----~~vyvv~~~g~~~~~ 203 (859)
.. ... ...+++ ..++.+..++..++...+........... .++.. ... +.++..+.+| .
T Consensus 175 -----~~----~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dg----~ 239 (368)
T 3mmy_A 175 -----CA----DVI-YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQH-RCVAIFKDKQNKPTGFALGSIEG----R 239 (368)
T ss_dssp -----EE----EEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCE-EEEEEEECTTSCEEEEEEEETTS----E
T ss_pred -----EE----Eec-CCeeEEEeCCCcEEEEEeccccchhhhccccccCCC-ceEEEcccCCCCCCeEEEecCCC----c
Confidence 11 112 234444 35888999999888877765443211111 11111 111 1144333333 4
Q ss_pred EEEEEcCCCce---eeeeeeeccc-----------CccCceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 204 AYQINAMNGEL---LNHETAAFSG-----------GFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 204 v~ald~~tG~~---~w~~~v~~~~-----------~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+..+|..++.. .......... .+ .++.. .+.++++... .|.+++.++.+++
T Consensus 240 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV--NGIAFHPVHGTLATVGS-DGRFSFWDKDART 306 (368)
T ss_dssp EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCE--EEEEECTTTCCEEEEET-TSCEEEEETTTTE
T ss_pred EEEEecCCCCccccceeeeeeecccccccccccccce--EEEEEecCCCEEEEEcc-CCeEEEEECCCCc
Confidence 67778777733 3333211110 01 11111 3346666654 4788888888876
No 108
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.79 E-value=0.65 Score=48.43 Aligned_cols=188 Identities=15% Similarity=0.210 Sum_probs=92.9
Q ss_pred CCEEEEE-eCCCEEEEEECC-CCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCC--CCcEe--EEEecc
Q 003001 53 RKRVVVS-TEENVIASLDLR-HGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLP--DGQMV--WESFLR 125 (859)
Q Consensus 53 ~~~Vyva-t~~g~l~ALd~~-tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~--tG~ll--W~~~~~ 125 (859)
++.+|++ +.++.|..+|.. +|+..=...+.....+..+....++..++++ ..++.++.|+.. +|++. -+....
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 3468888 568899999874 5633212222222222233222233444444 444799999887 77744 233322
Q ss_pred CccccCCcccccccccccCCC-eEEEEe--CCEEEEEEcCCCc---EEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 126 GSKHSKPLLLVPTNLKVDKDS-LILVSS--KGCLHAVSSIDGE---ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~~~~-~VvV~~--~g~l~ald~~tG~---~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
... ... ....++ .+++.. ++.+..+|..+|+ .......... +..+..+..+..+|+.+...+
T Consensus 84 ~~~--~~~-------~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~ 151 (343)
T 1ri6_A 84 GSL--THI-------STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG---CHSANISPDNRTLWVPALKQD 151 (343)
T ss_dssp SCC--SEE-------EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT---BCCCEECTTSSEEEEEEGGGT
T ss_pred CCC--cEE-------EEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCC---ceEEEECCCCCEEEEecCCCC
Confidence 211 011 122234 455543 7888888885443 3333322211 222322334556777653332
Q ss_pred ceeEEEEEEcCC-Cceeeee--eeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeec
Q 003001 200 SQFHAYQINAMN-GELLNHE--TAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 200 ~~~~v~ald~~t-G~~~w~~--~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~s 255 (859)
.+..+|+.+ |+..... ....+.+.....+.. .+..+++.+...+.+.+.++..
T Consensus 152 ---~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 152 ---RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp ---EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred ---EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 477788877 7654322 222221111111222 3445666666668888888843
No 109
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.74 E-value=0.037 Score=60.21 Aligned_cols=196 Identities=12% Similarity=0.075 Sum_probs=95.7
Q ss_pred cCCCEEEEEeC------CCEEEEEECCCCccceEEEcC---CCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEE
Q 003001 51 TGRKRVVVSTE------ENVIASLDLRHGEIFWRHVLG---INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWE 121 (859)
Q Consensus 51 ~~~~~Vyvat~------~g~l~ALd~~tG~ilWR~~l~---~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~ 121 (859)
+++..+..++. +|.+.-.+..+|+........ ....+..+....++.+++ ++.++.|+.||..+|+.+..
T Consensus 52 pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~dg~v~lWd~~~~~~~~~ 130 (357)
T 4g56_B 52 RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASDSGAVELWEILEKESLLV 130 (357)
T ss_dssp SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EETTSCEEEC--------CC
T ss_pred CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EECCCEEEEeeccccceeEE
Confidence 34556767766 567888888888765543221 111233332222344444 55567999999999976543
Q ss_pred EeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 122 SFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 122 ~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
..............+ ....++..++ . .+|.+...|..+|+.+..+....... ..+.....++.+++.+...+
T Consensus 131 ~~~~~~~h~~~V~~v----~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v--~~v~~s~~~~~~~~s~~~dg 204 (357)
T 4g56_B 131 NKFAKYEHDDIVKTL----SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV--NCVAACPGKDTIFLSCGEDG 204 (357)
T ss_dssp CCEEECCCSSCEEEE----EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECTTCSSCEEEEETTS
T ss_pred EeeccCCCCCCEEEE----EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE--EEEEEccCCCceeeeeccCC
Confidence 222111000011111 1222454444 3 48999999999999998886543332 22221223333444333322
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+..+|+.+|++...............+.+- ++.++++.+. .+.+++.++.+++
T Consensus 205 ---~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~-d~~i~~wd~~~~~ 260 (357)
T 4g56_B 205 ---RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE-TGNVSLVNIKNPD 260 (357)
T ss_dssp ---CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES-SSCEEEEESSCGG
T ss_pred ---ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec-ccceeEEECCCCc
Confidence 3777899998877555322211111111111 2456777664 4778888888776
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.74 E-value=0.19 Score=54.95 Aligned_cols=185 Identities=15% Similarity=0.111 Sum_probs=99.3
Q ss_pred EeCCCEEEEEECCCCccce---EEEcCCCcceeeeeeee-cCEEEEEEcCCCeEEEEeCCCC-------cEeEEEeccCc
Q 003001 59 STEENVIASLDLRHGEIFW---RHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDG-------QMVWESFLRGS 127 (859)
Q Consensus 59 at~~g~l~ALd~~tG~ilW---R~~l~~~~~i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~tG-------~llW~~~~~~~ 127 (859)
++.+|.|.-.|..+....- +........+..+.... ++..++.++.++.|+.||..+| +.+........
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~ 132 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence 4678999999975432211 11111112233332222 4456655666789999999999 44555544332
Q ss_pred cccCCcccccccccccCCC-eEEE-E-eCCEEEEEEcCCCcEEEEEe--ccCcceeeeeEEEeecCCeEEEEEecCCcee
Q 003001 128 KHSKPLLLVPTNLKVDKDS-LILV-S-SKGCLHAVSSIDGEILWTRD--FAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~~~-~VvV-~-~~g~l~ald~~tG~~~W~~~--~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~ 202 (859)
.. ..+ ....++ .+++ . .||.+...|..+|+...+.. ..... ...+.....+..++..+.+|
T Consensus 133 ~v----~~~----~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~---- 198 (402)
T 2aq5_A 133 RV----GIV----AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT--IYSVDWSRDGALICTSCRDK---- 198 (402)
T ss_dssp CE----EEE----EECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC--EEEEEECTTSSCEEEEETTS----
T ss_pred eE----EEE----EECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc--eEEEEECCCCCEEEEEecCC----
Confidence 22 111 111133 3444 3 48999999999999988873 22222 22232223444455444444
Q ss_pred EEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEE--CCCCeEEEEEeecCe
Q 003001 203 HAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLD--TTRSILVTVSFKNRK 257 (859)
Q Consensus 203 ~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d--~~~~~l~v~~L~sg~ 257 (859)
.+..+|+.+|+.+.+............+.+. .+.++++.. ...+.+++.++.++.
T Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 5888999999988766211111101122232 233444441 345788888887755
No 111
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.73 E-value=0.22 Score=51.26 Aligned_cols=183 Identities=8% Similarity=0.043 Sum_probs=95.5
Q ss_pred CCEEEEEeC-CCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++++|+++. .+.|..+|+ +|+... ..+... ....++. ...++.++++. .++.|+.||. +|+.... ..... .
T Consensus 109 ~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~-~ 182 (299)
T 2z2n_A 109 NGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFIT-LGSDNALWFTENQNNAIGRITE-SGDITEF-KIPTP-A 182 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEE-ECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSST-T
T ss_pred CCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEE-EcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eCCCC-C
Confidence 567888864 689999999 887652 233322 1122331 23334445443 4568999999 8987642 22211 1
Q ss_pred cCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
.. +.....+.++.+++.. ++.|..+|. +|+..- +..+.....+..+. ...++.+|+.....+ .+..+
T Consensus 183 -~~----~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~---~i~~~ 251 (299)
T 2z2n_A 183 -SG----PVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAIT-AGAGIDLWFTEWGAN---KIGRL 251 (299)
T ss_dssp -CC----EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEE-ECSTTCEEEEETTTT---EEEEE
T ss_pred -Cc----ceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEE-ECCCCCEEEeccCCc---eEEEE
Confidence 00 1011334457788864 789999999 887542 33332222244443 234567887654433 48889
Q ss_pred EcCCCceeeeeeeecccCccC-ceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 208 NAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+ +|+.. ... .+..... ..+.+.++.+++.+. .+.+..++..+++
T Consensus 252 d~-~g~~~-~~~--~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 252 TS-NNIIE-EYP--IQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ET-TTEEE-EEE--CSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC---
T ss_pred CC-CCceE-EEe--CCCCCCccceEEecCCCEEEEec-CCcEEEEEcCccc
Confidence 98 67532 222 2222222 112223333434433 4566666665543
No 112
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.089 Score=58.03 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=97.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcC-CCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc-cc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLG-INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS-KH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~-~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~-~l 129 (859)
++..+++++.+|.|...|.++|+.+++.... ....+..+....++..++.++.++.|+.||..+|+.+-+...... ..
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 260 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI 260 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce
Confidence 3667889999999999999999999988753 122344442222444555566677999999999999887764322 11
Q ss_pred cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcce-----e-------------------eeeEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESV-----E-------------------VQQVI 183 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~-----~-------------------~~~~v 183 (859)
......+ ....++..++. .||.+...|..+|+.+..+....... . ...+.
T Consensus 261 -~~~~~~~---~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 261 -THVEVCQ---FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp -EEEEECT---TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred -EEEEecc---ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 1111111 11224545553 38999999999999887776432110 0 11111
Q ss_pred EeecCCeEEEEEecCCceeEEEEEEcCCCceeeee
Q 003001 184 QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 184 ~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (859)
..++..++.+...+ .+..+|+.+|+.....
T Consensus 337 --~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 337 --VSNDKILLTDEATS---SIVMFSLNELSSSKAV 366 (437)
T ss_dssp --EETTEEEEEEGGGT---EEEEEETTCGGGCEEE
T ss_pred --ECCceEEEecCCCC---eEEEEECCCcccceEE
Confidence 12444444443322 5888899999877554
No 113
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.71 E-value=0.76 Score=48.13 Aligned_cols=144 Identities=7% Similarity=-0.042 Sum_probs=81.2
Q ss_pred EEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccC
Q 003001 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAA 174 (859)
Q Consensus 97 ~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~ 174 (859)
..++.++.++.|+.||..+|..+.......... ....+.+ ++..++ . .|+.+...|..+|+.+.++....
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v-~~~~~~~-------~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 97 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQVEVRSIQVTETPV-RAGKFIA-------RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97 (304)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEEEEG-------GGTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEEcCCCcEEEEECCCCceeEEeeccCCcE-EEEEEeC-------CCCEEEEECCCCEEEEEECCCCcEEEEEeCCC
Confidence 344445567799999999999998877654432 1111111 343344 3 49999999999999988876543
Q ss_pred cceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe---cCcEEEEEECCCCeEEEE
Q 003001 175 ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV---SSDTLVTLDTTRSILVTV 251 (859)
Q Consensus 175 ~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v---~~~~lv~~d~~~~~l~v~ 251 (859)
... ..+.....+..++..+.+| .+...|..+|...-+.-..-...+ .++.. ++..++.... .+.+++-
T Consensus 98 ~~v--~~~~~~~~~~~l~sgs~D~----~v~lWd~~~~~~~~~~~~~h~~~v--~~v~~~p~~~~~l~sgs~-D~~v~iw 168 (304)
T 2ynn_A 98 DYI--RSIAVHPTKPYVLSGSDDL----TVKLWNWENNWALEQTFEGHEHFV--MCVAFNPKDPSTFASGCL-DRTVKVW 168 (304)
T ss_dssp SCE--EEEEECSSSSEEEEEETTS----CEEEEEGGGTTEEEEEECCCCSCE--EEEEECTTCTTEEEEEET-TSEEEEE
T ss_pred CcE--EEEEEcCCCCEEEEECCCC----eEEEEECCCCcchhhhhcccCCcE--EEEEECCCCCCEEEEEeC-CCeEEEE
Confidence 332 2222222344444444444 377778888754432211111111 12222 2345666554 4788888
Q ss_pred EeecCe
Q 003001 252 SFKNRK 257 (859)
Q Consensus 252 ~L~sg~ 257 (859)
++.++.
T Consensus 169 d~~~~~ 174 (304)
T 2ynn_A 169 SLGQST 174 (304)
T ss_dssp ETTCSS
T ss_pred ECCCCC
Confidence 887654
No 114
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.69 E-value=0.14 Score=53.66 Aligned_cols=188 Identities=10% Similarity=0.019 Sum_probs=106.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCC-Ccceeeeeee-ecC-EEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGI-NDVVDGIDIA-LGK-YVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~-~~~i~~l~~~-~~~-~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.+..++.++.++.+...|...+... ...+.. ...+...... .+. ..++.++.++.++.||..+|+++.........
T Consensus 139 ~~~~l~s~s~d~~~~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~ 217 (340)
T 4aow_A 139 DNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217 (340)
T ss_dssp TSSCEEEEETTSCEEEECTTSCEEE-EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred cCccceeecCCCeEEEEEeCCCceE-EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc
Confidence 3556888888898888887655432 222222 1222222111 222 23333555679999999999998877654432
Q ss_pred ccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
+ ..+ ....++..++ . .||.+...|..+++.+.......... .+. ...++.+.+.+.++ .+..
T Consensus 218 v----~~~----~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~---~~~-~~~~~~~~~~~~d~----~i~i 281 (340)
T 4aow_A 218 L----NTV----TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIIN---ALC-FSPNRYWLCAATGP----SIKI 281 (340)
T ss_dssp E----EEE----EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEE---EEE-ECSSSSEEEEEETT----EEEE
T ss_pred E----EEE----EECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEE---eee-cCCCCceeeccCCC----EEEE
Confidence 2 111 1122455555 3 48999999999999988876553221 221 12344555545444 4777
Q ss_pred EEcCCCceeeeeeeecc----cCccCc--eEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 207 INAMNGELLNHETAAFS----GGFVGD--VALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 207 ld~~tG~~~w~~~v~~~----~~~s~~--~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|..++..+++..-... ..-.+. ++-. .+.++++... .|.+++-++.+|+
T Consensus 282 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-Dg~v~iW~~~tGt 339 (340)
T 4aow_A 282 WDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT-DNLVRVWQVTIGT 339 (340)
T ss_dssp EETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET-TSCEEEEEEEC--
T ss_pred EECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC-CCEEEEEeCCCcC
Confidence 89999988877642211 011111 1111 3456766664 4788888888875
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.86 Score=48.48 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=100.9
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeee--cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL--GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~--~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
++.+.+-+.++.+...|.++++++.+...+....+..+.... .+..++.++.++.++.||..+|+...........
T Consensus 94 D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-- 171 (343)
T 3lrv_A 94 CNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDV-- 171 (343)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSC--
T ss_pred CCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCC--
Confidence 344444444555555677788877777765443344332222 3444444555679999999999996655333221
Q ss_pred CCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEE-EEEec-cCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEIL-WTRDF-AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~-W~~~~-~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
....+ ....++.+++. .||.+...|..+|+.. -++.. .... ...+..+ .++...+.+.++ .+..
T Consensus 172 -~i~~~----~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~fs-~~g~~l~s~~~~----~v~i 239 (343)
T 3lrv_A 172 -EYSSG----VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK--IKEVKFA-DNGYWMVVECDQ----TVVC 239 (343)
T ss_dssp -CCCEE----EECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC--EEEEEEC-TTSSEEEEEESS----BEEE
T ss_pred -ceEEE----EECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC--EEEEEEe-CCCCEEEEEeCC----eEEE
Confidence 11111 12225556664 4899999999999876 55544 1211 2223222 233333334444 3777
Q ss_pred EEcCCCceeeeeeeec-c-cCccCceEEe--cCcEEEEEECCCCeEEEEEeecC
Q 003001 207 INAMNGELLNHETAAF-S-GGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 207 ld~~tG~~~w~~~v~~-~-~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg 256 (859)
+|+.+++.......-. . ..+...++-. .+.++++.....+.+++.++.++
T Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 8999887764432100 0 1111112222 34466665543567888877554
No 116
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.67 E-value=0.75 Score=48.95 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=90.7
Q ss_pred CCEEEEEeC-CCEEEEEECCCCc--cceEEEcCC-----Cc---ceeeeeeeecCEEEEEEc--CCCeEEEEeCCCCcEe
Q 003001 53 RKRVVVSTE-ENVIASLDLRHGE--IFWRHVLGI-----ND---VVDGIDIALGKYVITLSS--DGSTLRAWNLPDGQMV 119 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~tG~--ilWR~~l~~-----~~---~i~~l~~~~~~~~V~Vs~--~g~~v~Ald~~tG~ll 119 (859)
++.+|+++. .+.|..+|+ +|+ .++...-.. .. ...++.....++.++|+. .++.|+.|| .+|+.+
T Consensus 101 ~g~l~v~d~~~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TSCEEEEETTTTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCCEEEEECCCCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 556888765 689999997 566 454432100 00 112332112145555544 367999999 689999
Q ss_pred EEEeccCccc-c-CCcccccccccccCC-CeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEE
Q 003001 120 WESFLRGSKH-S-KPLLLVPTNLKVDKD-SLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (859)
Q Consensus 120 W~~~~~~~~l-s-~~~~~~~~~~~~~~~-~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv 194 (859)
+......... . ......|.+...+.+ +.++|. .+++|..+|..+|+.+.+...+.....+..+. ..++.+|..
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~pg~~~~~ 256 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS--YIPGFLFAV 256 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE--EETTEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee--ecCCEEEEe
Confidence 9875432210 0 000011112234444 788886 38899999999999998886543222233332 123444443
Q ss_pred Eec----CCceeEEEEEEcCCCceeeee
Q 003001 195 GYA----GSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 195 ~~~----g~~~~~v~ald~~tG~~~w~~ 218 (859)
.-. +.....+..+|..+|+.+...
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 211 111235888999999988654
No 117
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.64 E-value=0.28 Score=50.39 Aligned_cols=183 Identities=10% Similarity=0.110 Sum_probs=97.8
Q ss_pred CCEEEEEeC-CCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++.+|+++. .+.|..+|+. |+.. +..++.. ....++. ...++.++++. .++.|+.+|+. |+.. +...... .
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~-~ 145 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGIT-EGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNK-G 145 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEE-ECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSST-T
T ss_pred CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccce-ECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCC-C
Confidence 567898876 6889999988 8763 3333322 1222331 22234455544 35689999997 8876 3333211 1
Q ss_pred cCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
.. + .....+.++.+++.. ++.|+.+|. +|+..- +..+.....+..+. ...++.+|+....++ .+..+
T Consensus 146 -~~-~---~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~---~i~~~ 214 (300)
T 2qc5_A 146 -SY-P---AFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGIT-SGNDGALWFVEIMGN---KIGRI 214 (300)
T ss_dssp -CC-E---EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEE-ECTTSSEEEEETTTT---EEEEE
T ss_pred -CC-c---eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEE-ECCCCCEEEEccCCC---EEEEE
Confidence 00 1 111334456788764 789999998 787653 33332222244443 234678887665443 48888
Q ss_pred EcCCCceeeeeeeecccCccC-ceEEec-CcEEEEEECCCCeEEEEEeecCe
Q 003001 208 NAMNGELLNHETAAFSGGFVG-DVALVS-SDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~-~~~~v~-~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|+ +|+..... .+..... ..+.++ ++.+++.+..++.+...+. ++.
T Consensus 215 ~~-~g~~~~~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 261 (300)
T 2qc5_A 215 TT-TGEISEYD---IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNT 261 (300)
T ss_dssp CT-TCCEEEEE---CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSC
T ss_pred cC-CCcEEEEE---CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCc
Confidence 88 77655321 2222222 122222 2334445544456666665 344
No 118
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.64 E-value=0.11 Score=56.06 Aligned_cols=196 Identities=12% Similarity=0.041 Sum_probs=104.0
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCc-EeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQ-MVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~-llW~~~~~~~~l 129 (859)
.+..+++++.+|.|...|.++|+.+....... ..+..+... .+..+++.++.++.++.||..++. .+..........
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR-QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCC-SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCC-CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 34478999999999999999999987765322 223333222 233355556667799999999887 333332111100
Q ss_pred ---------cCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcce--eeeeEEEe-ecCCeEEEEE
Q 003001 130 ---------SKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESV--EVQQVIQL-DESDQIYVVG 195 (859)
Q Consensus 130 ---------s~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~--~~~~~v~~-~~~~~vyvv~ 195 (859)
.....+.. .....++..++ . .+|.+...|..+|+............ ........ ...+.+.+.+
T Consensus 234 ~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 234 SQAVESANTAHNGKVNG--LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp CCCTTTSSCSCSSCEEE--EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE
T ss_pred ceeeccccccccCceeE--EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe
Confidence 00000100 01122343333 3 38888888888887654332211000 00011111 1234444444
Q ss_pred ecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 196 YAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 196 ~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+ .+..+|..+|+.+...... ...+. .+.+- .+..+++... .|.+++-++.+++
T Consensus 312 ~~~----~i~v~d~~~~~~~~~~~~~-~~~v~-~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~ 367 (408)
T 4a11_B 312 YGS----TIAVYTVYSGEQITMLKGH-YKTVD-CCVFQSNFQELYSGSR-DCNILAWVPSLYE 367 (408)
T ss_dssp ETT----EEEEEETTTCCEEEEECCC-SSCEE-EEEEETTTTEEEEEET-TSCEEEEEECC--
T ss_pred cCC----EEEEEECcCCcceeeeccC-CCeEE-EEEEcCCCCEEEEECC-CCeEEEEeCCCCC
Confidence 444 5888999999988766311 11111 12222 3456666654 4788888888765
No 119
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.63 E-value=0.53 Score=49.90 Aligned_cols=192 Identities=10% Similarity=0.071 Sum_probs=100.6
Q ss_pred CCCEEEEEeCCCEEEEEECCCCc--cceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGE--IFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~--ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
+++.+++++.+|.|.-.|..+|+ .+.+..-. ...+..+....++..++.++.++.++.||..+|+..-........
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~- 96 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN- 96 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS-
T ss_pred CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC-
Confidence 46678888899999999999997 55444321 223433422223445554555679999999999866665433211
Q ss_pred cCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEecc-Cc-ceeeeeEEEeecCCeEEEEEecCCceeEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFA-AE-SVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~-~~-~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
.....+ ....++..++ . .+|.+...|..+++..|..... .+ ...+..+.....+..++..+.+| .+.
T Consensus 97 -~~v~~~----~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~ 167 (372)
T 1k8k_C 97 -RAARCV----RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF----KCR 167 (372)
T ss_dssp -SCEEEE----EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS----CEE
T ss_pred -CceeEE----EECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC----CEE
Confidence 111111 1112343333 3 3788888777777754443221 11 11122222122333344333334 366
Q ss_pred EEEc------------------CCCceeeeeeeecccCccCceEE-ecCcEEEEEECCCCeEEEEEeecCe
Q 003001 206 QINA------------------MNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 206 ald~------------------~tG~~~w~~~v~~~~~~s~~~~~-v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+|. .+|+.+...... ...+. .+.+ ..+..+++... .+.+++.++.+++
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVH-GVCFSANGSRVAWVSH-DSTVCLADADKKM 235 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEE-EEEECSSSSEEEEEET-TTEEEEEEGGGTT
T ss_pred EEEcccccccccccccccccccchhhheEecCCC-CCeEE-EEEECCCCCEEEEEeC-CCEEEEEECCCCc
Confidence 6774 355555444210 01111 1111 13446666654 5889999998877
No 120
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.60 E-value=0.27 Score=52.25 Aligned_cols=190 Identities=11% Similarity=0.048 Sum_probs=106.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
+++.+++++.+|.|.-.|.++|+..-...+... ..+..+....++..++.++.++.++.||..++...|..........
T Consensus 63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~ 142 (372)
T 1k8k_C 63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 142 (372)
T ss_dssp TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence 567799999999999999999986666554332 2233332222344555566667899999999886554433211110
Q ss_pred CCcccccccccccCCCeEEE-E-eCCEEEEEEc------------------CCCcEEEEEeccCcceeeeeEEEeecCCe
Q 003001 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSS------------------IDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~------------------~tG~~~W~~~~~~~~~~~~~~v~~~~~~~ 190 (859)
.....+ ....++..++ . .+|.+..+|. .+|+.+-.+...... ...+.....+..
T Consensus 143 ~~i~~~----~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~ 216 (372)
T 1k8k_C 143 STVLSL----DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW--VHGVCFSANGSR 216 (372)
T ss_dssp SCEEEE----EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC--EEEEEECSSSSE
T ss_pred CCeeEE----EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe--EEEEEECCCCCE
Confidence 111111 1222344444 3 3888988884 467776665433222 222322234445
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeec
Q 003001 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~s 255 (859)
++..+.+| .+..+|..+|+.+....... ..+.. +.+. .+.++++. ..+.+++.++.+
T Consensus 217 l~~~~~d~----~i~i~d~~~~~~~~~~~~~~-~~v~~-~~~~~~~~~l~~~--~d~~i~i~~~~~ 274 (372)
T 1k8k_C 217 VAWVSHDS----TVCLADADKKMAVATLASET-LPLLA-VTFITESSLVAAG--HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEETTT----EEEEEEGGGTTEEEEEECSS-CCEEE-EEEEETTEEEEEE--TTSSCEEEEEET
T ss_pred EEEEeCCC----EEEEEECCCCceeEEEccCC-CCeEE-EEEecCCCEEEEE--eCCeEEEEEccC
Confidence 55544444 58888999999887664211 11111 2222 33445444 457788888877
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.57 E-value=0.17 Score=53.41 Aligned_cols=185 Identities=6% Similarity=-0.060 Sum_probs=105.8
Q ss_pred CEEEEEeCCCEEEEEECCC-CccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003001 54 KRVVVSTEENVIASLDLRH-GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~t-G~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~ 132 (859)
+.+++++.+|.|.-.|.++ |+.+-+........+..+....++..++.++.++.|+.||..+|+.+.......+.. .
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~--~ 132 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK--T 132 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE--E
T ss_pred eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE--E
Confidence 6788899999999999998 554423322222234434222244455545566799999999999887655444332 1
Q ss_pred cccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 133 LLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 133 ~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
....+ ..++..++ . .||.+...|..+|+.+.......... .+ ......+++.+..+ .+..+|..
T Consensus 133 ~~~~~-----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~----~i~~~~~~ 198 (368)
T 3mmy_A 133 IHWIK-----APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY---CA--DVIYPMAVVATAER----GLIVYQLE 198 (368)
T ss_dssp EEEEE-----CSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE---EE--EEETTEEEEEEGGG----CEEEEECS
T ss_pred EEEEe-----CCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce---EE--EecCCeeEEEeCCC----cEEEEEec
Confidence 11110 22455444 3 49999999999999998887664322 11 12445555545444 37777887
Q ss_pred CCceeeeeeeecccCccCceEE--ecC----cEEEEEECCCCeEEEEEeecC
Q 003001 211 NGELLNHETAAFSGGFVGDVAL--VSS----DTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~--v~~----~~lv~~d~~~~~l~v~~L~sg 256 (859)
++...+..... +......++. ... +.+++.. ..+.+.+.++..+
T Consensus 199 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 199 NQPSEFRRIES-PLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAIHYINPP 248 (368)
T ss_dssp SSCEEEEECCC-SCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEEEESSCS
T ss_pred cccchhhhccc-cccCCCceEEEcccCCCCCCeEEEec-CCCcEEEEecCCC
Confidence 77665554221 1111111211 111 1244444 3577777777665
No 122
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.53 E-value=0.15 Score=53.85 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=68.5
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeee-cCEEEEEEcCCCeEEEEeCCCCcEeEEEec---cCcc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFL---RGSK 128 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~---~~~~ 128 (859)
+..+++++.+|.|.-.|..+|+.+....-. ...+..+.... ++..++.++.++.|+.||..+|+.+..... ....
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGH-GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESC-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCC-CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 346888999999999999999998876632 22344442222 444555566667999999999999888732 2211
Q ss_pred ccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEIL 167 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~ 167 (859)
. ..+ ....++..++ . .||.+...|..+|+..
T Consensus 164 v----~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 164 V----LSA----DYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp E----EEE----EECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred e----eEE----EECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 1 111 1122343444 3 4889999999888654
No 123
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=96.52 E-value=0.35 Score=52.71 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=50.3
Q ss_pred ccCCCEEEEEeC----------CCEEEEEECCCCccceEEEcCCCc-----ceeeeeeeecCEEEEEEcC--CCeEEEEe
Q 003001 50 KTGRKRVVVSTE----------ENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGKYVITLSSD--GSTLRAWN 112 (859)
Q Consensus 50 ~~~~~~Vyvat~----------~g~l~ALd~~tG~ilWR~~l~~~~-----~i~~l~~~~~~~~V~Vs~~--g~~v~Ald 112 (859)
+.+++++|++++ ++.|..+|+++++++.+..+.... ....+....++..++++.. ++.|..||
T Consensus 58 spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d 137 (361)
T 2oiz_A 58 SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVD 137 (361)
T ss_dssp CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEE
T ss_pred CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEE
Confidence 456788999974 567999999999999888765221 1113322234556666542 46899999
Q ss_pred CCCCcEeEE
Q 003001 113 LPDGQMVWE 121 (859)
Q Consensus 113 ~~tG~llW~ 121 (859)
..+|+++-+
T Consensus 138 ~~~~~~~~~ 146 (361)
T 2oiz_A 138 VAKGDYVED 146 (361)
T ss_dssp TTTTEEEEE
T ss_pred CCCCcEEEE
Confidence 999998766
No 124
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.47 E-value=0.66 Score=50.30 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=86.7
Q ss_pred cCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEec
Q 003001 95 GKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 95 ~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~~ 172 (859)
|..+++.++ .++.|+-||..+|+++.+.....++. +..+ ..++..++ .+++.+..++..+|+.+-....
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~--~v~f-------spdg~~l~s~s~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK--DLHF-------STDGKVVAYITGSSLEVISTVTGSCIARKTD 215 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC--EEEE-------CTTSSEEEEECSSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE--EEEE-------ccCCceEEeccceeEEEEEeccCcceeeeec
Confidence 333444454 46799999999999999987655542 2222 22455555 4678888999999987655444
Q ss_pred cCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccC-ceEEe--cCcEEEEEECCCCeEE
Q 003001 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALV--SSDTLVTLDTTRSILV 249 (859)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v--~~~~lv~~d~~~~~l~ 249 (859)
.........+..+..+..+...+.+++....+..+|..++...-............ .++-. .+.++++... .+.++
T Consensus 216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-D~~V~ 294 (365)
T 4h5i_A 216 FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-DNSIA 294 (365)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-TSCEE
T ss_pred CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC-CCEEE
Confidence 33332233343333444555555555444556666766655432221111111111 12222 3456766654 47899
Q ss_pred EEEeecCe
Q 003001 250 TVSFKNRK 257 (859)
Q Consensus 250 v~~L~sg~ 257 (859)
+-++.+++
T Consensus 295 iwd~~~~~ 302 (365)
T 4h5i_A 295 LVKLKDLS 302 (365)
T ss_dssp EEETTTTE
T ss_pred EEECCCCc
Confidence 99998887
No 125
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.47 E-value=1.4 Score=48.24 Aligned_cols=195 Identities=12% Similarity=0.046 Sum_probs=105.5
Q ss_pred CCCEEEEEeCCCEEEEEECCC---Ccc---ceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCC---CCcEeEEE
Q 003001 52 GRKRVVVSTEENVIASLDLRH---GEI---FWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP---DGQMVWES 122 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~t---G~i---lWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~---tG~llW~~ 122 (859)
++..+++++.+|.|.-.|..+ |.. ..... ....+..+....++..++.++.++.++.||.. +|+..-..
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 152 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFL 152 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceeeecc--CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecc
Confidence 456788999999999999887 651 22222 22224434222334455556667799999994 67655433
Q ss_pred ecc--------CccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEE
Q 003001 123 FLR--------GSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIY 192 (859)
Q Consensus 123 ~~~--------~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vy 192 (859)
... .... .. ...........++..++. .+|.+...|..+|+.+++.........+..+.....+..++
T Consensus 153 ~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 230 (437)
T 3gre_A 153 NCECIRKINLKNFGK-NE-YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLI 230 (437)
T ss_dssp EEEEEEEEEGGGGSS-CC-CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEE
T ss_pred ccceeEEEEccCccc-cc-CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEE
Confidence 321 1000 00 000000001123445553 48999999999999999987631111122232222344444
Q ss_pred EEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-----cCc-EEEEEECCCCeEEEEEeecCe
Q 003001 193 VVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-----SSD-TLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 193 vv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-----~~~-~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+.+| .+..+|+.+|+.+..........+. ++.. .++ ++++.. ..+.+++-++.+++
T Consensus 231 s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 231 LGTTRG----IIDIWDIRFNVLIRSWSFGDHAPIT--HVEVCQFYGKNSVIVVGGS-SKTFLTIWNFVKGH 294 (437)
T ss_dssp EEETTS----CEEEEETTTTEEEEEEBCTTCEEEE--EEEECTTTCTTEEEEEEES-TTEEEEEEETTTTE
T ss_pred EEcCCC----eEEEEEcCCccEEEEEecCCCCceE--EEEeccccCCCccEEEEEc-CCCcEEEEEcCCCc
Confidence 444444 3888899999887665422111111 1100 122 444443 45788888888876
No 126
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.57 Score=52.11 Aligned_cols=154 Identities=7% Similarity=-0.019 Sum_probs=80.6
Q ss_pred EEEEEcCCCeEEEEeCC--CCcEeEEEeccCccccCCcccccccccccCCCe-EEEE-eCCEEEEEEcCCCcEEE----E
Q 003001 98 VITLSSDGSTLRAWNLP--DGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSL-ILVS-SKGCLHAVSSIDGEILW----T 169 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~--tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~-VvV~-~~g~l~ald~~tG~~~W----~ 169 (859)
+++.++.++.|+.||.. +|+.+-........ .....+ ....++. +++. .+|.++.++..+|+..- .
T Consensus 117 l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~v~~~----~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~ 190 (450)
T 2vdu_B 117 LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS--KRPNAI----SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEP 190 (450)
T ss_dssp EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS--SCEEEE----EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCC
T ss_pred EEEEECCCCeEEEEECcCCCCceeeeeecccCC--CCceEE----EEcCCCCEEEEEeCCCcEEEEecCCccccccccee
Confidence 34556667799999999 88877665421100 000111 1122343 4443 38999999988887532 1
Q ss_pred EeccCcceeeeeEEEeec--CCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEECCCCe
Q 003001 170 RDFAAESVEVQQVIQLDE--SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSI 247 (859)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~--~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~ 247 (859)
....... +..+..... ++..++.+..++ .+..+|+.+|+.+......-...+..-++. .+.++++.. ..+.
T Consensus 191 ~~~h~~~--v~~~~~sp~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~ 263 (450)
T 2vdu_B 191 ILGHVSM--LTDVHLIKDSDGHQFIITSDRDE---HIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDK 263 (450)
T ss_dssp SEECSSC--EEEEEEEECTTSCEEEEEEETTS---CEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSE
T ss_pred eecccCc--eEEEEEcCCCCCCcEEEEEcCCC---cEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCe
Confidence 1111111 222222223 144444443332 377788889987755321111222221222 455666665 4588
Q ss_pred EEEEEeecCeeeEEEEee
Q 003001 248 LVTVSFKNRKIAFQETHL 265 (859)
Q Consensus 248 l~v~~L~sg~~~~~~~~l 265 (859)
+++-++.+++ ..+.+.+
T Consensus 264 v~vwd~~~~~-~~~~~~~ 280 (450)
T 2vdu_B 264 IFAWDWKTGK-NLSTFDY 280 (450)
T ss_dssp EEEEETTTCC-EEEEEEC
T ss_pred EEEEECCCCc-Eeeeecc
Confidence 9999999887 2454543
No 127
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.42 E-value=0.46 Score=52.36 Aligned_cols=189 Identities=13% Similarity=0.082 Sum_probs=105.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|.-.|..+++.+-...- ....+..+....++..++.++.++.++.||..+|..+-.........
T Consensus 161 ~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v-- 237 (410)
T 1vyh_C 161 SGKLLASCSADMTIKLWDFQGFECIRTMHG-HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV-- 237 (410)
T ss_dssp TSSEEEEEETTSCCCEEETTSSCEEECCCC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE--
Confidence 466788899999999999988876533221 11223333222234444445667799999999999887766544322
Q ss_pred CcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEee-------------------cCCe
Q 003001 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLD-------------------ESDQ 190 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~-------------------~~~~ 190 (859)
..+ ....++..++. .||.+...|..+|+..=+........ ..+.... .++.
T Consensus 238 --~~~----~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 238 --RMV----RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV--ECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp --EEE----EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred --EEE----EECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE--EEEEEcCcccccchhhhccccccccCCCCC
Confidence 111 11224555553 48999999999988765543322211 1111011 0133
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.++.+...+ .+..+|..+|+.+...... ...+. .+.+- ++.++++.. ..+.+++-++.+++
T Consensus 310 ~l~sgs~D~---~i~iwd~~~~~~~~~~~~h-~~~v~-~v~~~~~g~~l~s~s-~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 310 FLLSGSRDK---TIKMWDVSTGMCLMTLVGH-DNWVR-GVLFHSGGKFILSCA-DDKTLRVWDYKNKR 371 (410)
T ss_dssp EEEEEETTS---EEEEEETTTTEEEEEEECC-SSCEE-EEEECSSSSCEEEEE-TTTEEEEECCTTSC
T ss_pred EEEEEeCCC---eEEEEECCCCceEEEEECC-CCcEE-EEEEcCCCCEEEEEe-CCCeEEEEECCCCc
Confidence 344443333 5788899999887655311 11111 11121 334555554 34788888887765
No 128
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=96.40 E-value=1.5 Score=47.66 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=71.2
Q ss_pred cCCCEEEEEeC------CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc----------CCCeEEEEeCC
Q 003001 51 TGRKRVVVSTE------ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNLP 114 (859)
Q Consensus 51 ~~~~~Vyvat~------~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~----------~g~~v~Ald~~ 114 (859)
.+.+++|++.. ++.++.+|+++|+++=+...... . ++....++..+|++. .++.|..||..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~--p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN--G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE--E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC--C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 34678999874 57999999999998755443221 1 332233455666653 13479999999
Q ss_pred CCcEeEEEeccCccccCCcccccccccccCC-CeEEEE--e-CCEEEEEEcCCCcEEEE
Q 003001 115 DGQMVWESFLRGSKHSKPLLLVPTNLKVDKD-SLILVS--S-KGCLHAVSSIDGEILWT 169 (859)
Q Consensus 115 tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~-~~VvV~--~-~g~l~ald~~tG~~~W~ 169 (859)
+++++.+..+........ ..+.......+ +.+++. . ++.+..+|.++++++-+
T Consensus 90 t~~~~~~i~~~~~~~~~g--~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGL--NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp TCCEEEEEEECTTBCCBC--CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred CCcEEEEEEcCccccccC--CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 999999887653211000 00001122223 467774 2 57899999999988755
No 129
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.18 Score=53.91 Aligned_cols=156 Identities=9% Similarity=-0.030 Sum_probs=86.2
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEe-EEEec-cCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV-WESFL-RGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~ll-W~~~~-~~~~l 129 (859)
+++.+++++.+|.+.-.|.++|+.+..........+..+....++..++.++.++.|+.||..+|+.. -+... .....
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v 217 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCE
Confidence 46678889999999999999999855443332222333322234445555667789999999999977 55544 22211
Q ss_pred cCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEecc-Ccceeee--eEEEeecCCeEEEEEecCCceeEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFA-AESVEVQ--QVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~--~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
..+ ....++..++ .+++.+...|..+++.......- ....... .+.. ..++..++.+..+.. .+.
T Consensus 218 ----~~l----~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~s~~d~--~i~ 286 (343)
T 3lrv_A 218 ----KEV----KFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI-DDSGKNMIAYSNESN--SLT 286 (343)
T ss_dssp ----EEE----EECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE-CTTSSEEEEEETTTT--EEE
T ss_pred ----EEE----EEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEE-CCCCCEEEEecCCCC--cEE
Confidence 111 1122444444 45778888898888765433210 0001000 1211 223444444333122 355
Q ss_pred EEEcCCCceeeee
Q 003001 206 QINAMNGELLNHE 218 (859)
Q Consensus 206 ald~~tG~~~w~~ 218 (859)
.++..++...|+.
T Consensus 287 v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 287 IYKFDKKTKNWTK 299 (343)
T ss_dssp EEEECTTTCSEEE
T ss_pred EEEEcccccceEe
Confidence 5566677777876
No 130
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.33 E-value=0.28 Score=53.64 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.+++++.+|.|.-.|.++|+.+-...- ....+..+....++..++.++.++.++.||..+|+............
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~-- 210 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-- 210 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE--
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcE--
Confidence 567788999999999999999987644321 11223333222233344445556799999999999988877654332
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccC-----cceeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAA-----ESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~-----~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
..... .. ++..++ . .||.+...|..+|+.+-+..... .......+.....+..++..+.+| .+
T Consensus 211 ~~~~~-----~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~----~v 280 (393)
T 1erj_A 211 TVAVS-----PG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR----SV 280 (393)
T ss_dssp EEEEC-----ST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----EE
T ss_pred EEEEE-----CC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC----EE
Confidence 11111 11 344444 3 48999999999998876653221 011122232222333444333333 46
Q ss_pred EEEEcCCCce
Q 003001 205 YQINAMNGEL 214 (859)
Q Consensus 205 ~ald~~tG~~ 214 (859)
..+|+.++..
T Consensus 281 ~~wd~~~~~~ 290 (393)
T 1erj_A 281 KLWNLQNANN 290 (393)
T ss_dssp EEEEC-----
T ss_pred EEEECCCCCC
Confidence 6677776554
No 131
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.31 E-value=0.14 Score=53.62 Aligned_cols=146 Identities=8% Similarity=0.060 Sum_probs=86.4
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCc
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPL 133 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~ 133 (859)
..++.++.++.|.-.|.++|+.+....-. ...+..+....++..++.++.++.++.||..+++.+.......... ..
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~--~~ 262 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIIN--AL 262 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEE--EE
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEE--ee
Confidence 34667788899999999999877654322 2234333222234455556667799999999999998887655432 11
Q ss_pred ccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEeccCcce-------eeeeEEEeecCCeEEEEEecCCceeEEE
Q 003001 134 LLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFAAESV-------EVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 134 ~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~~~~~~~-------~~~~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
.. ..++.+++ ..++.+...|..++...++........ ....+..+..+..++..+.+| .|.
T Consensus 263 ~~-------~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg----~v~ 331 (340)
T 4aow_A 263 CF-------SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN----LVR 331 (340)
T ss_dssp EE-------CSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS----CEE
T ss_pred ec-------CCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC----EEE
Confidence 11 11345555 469999999999999988876432111 111121122333444434444 366
Q ss_pred EEEcCCCc
Q 003001 206 QINAMNGE 213 (859)
Q Consensus 206 ald~~tG~ 213 (859)
..|+.||.
T Consensus 332 iW~~~tGt 339 (340)
T 4aow_A 332 VWQVTIGT 339 (340)
T ss_dssp EEEEEC--
T ss_pred EEeCCCcC
Confidence 67777775
No 132
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.31 E-value=0.12 Score=55.94 Aligned_cols=153 Identities=10% Similarity=0.060 Sum_probs=88.8
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
.+++.++.++.+|.|.-.|.++|+.+-...- -...+..+... .+..+++-++.++.|+.||..+|+..-+........
T Consensus 137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 215 (344)
T 4gqb_B 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215 (344)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeec
Confidence 3567799999999999999999998765432 12233333222 233444445556799999999999887654432211
Q ss_pred cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEE-EEecCCceeEEEE
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYV-VGYAGSSQFHAYQ 206 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyv-v~~~g~~~~~v~a 206 (859)
....+.. ... ++.+++. .||.|...|..+|+.+.++....... ..+..+..+..+++ .+.+| .+..
T Consensus 216 --~~~~~~~--~p~-~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v--~~v~fsp~g~~~lasgs~D~----~i~v 284 (344)
T 4gqb_B 216 --LPTSLAW--HPQ-QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCV--TGLVFSPHSVPFLASLSEDC----SLAV 284 (344)
T ss_dssp --CEEEEEE--CSS-CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCE--EEEEECSSSSCCEEEEETTS----CEEE
T ss_pred --cceeeee--cCC-CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCE--EEEEEccCCCeEEEEEeCCC----eEEE
Confidence 0011110 111 3445553 48999999999999988876543332 22322223334333 33444 3777
Q ss_pred EEcCCCcee
Q 003001 207 INAMNGELL 215 (859)
Q Consensus 207 ld~~tG~~~ 215 (859)
+|..+|+..
T Consensus 285 wd~~~~~~~ 293 (344)
T 4gqb_B 285 LDSSLSELF 293 (344)
T ss_dssp ECTTCCEEE
T ss_pred EECCCCcEE
Confidence 899998765
No 133
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.26 E-value=0.1 Score=55.02 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=100.6
Q ss_pred CCC-EEEEEeCCCEEEEEEC-CCCccceEEEcCC---CcceeeeeeeecCEEEEEEcCCCeEEEEeCCC---------Cc
Q 003001 52 GRK-RVVVSTEENVIASLDL-RHGEIFWRHVLGI---NDVVDGIDIALGKYVITLSSDGSTLRAWNLPD---------GQ 117 (859)
Q Consensus 52 ~~~-~Vyvat~~g~l~ALd~-~tG~ilWR~~l~~---~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~t---------G~ 117 (859)
++. .+++++.+|.|...|. ++|+. ..+.. ...+..+.... +..++.++.++.++.||..+ ++
T Consensus 67 ~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 67 NTDLQIYVGTVQGEILKVDLIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred CCCcEEEEEcCCCeEEEEEeccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 466 7999999999999999 88876 33332 22343332222 44454456667999999987 77
Q ss_pred EeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCC-CcEEEEEeccCcceeeeeEEEeecCCeEEEEE
Q 003001 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSID-GEILWTRDFAAESVEVQQVIQLDESDQIYVVG 195 (859)
Q Consensus 118 llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~ 195 (859)
.++......... .+ ... .+.+++. .+|.+..+|..+ +..............+..+.....++..++++
T Consensus 143 ~~~~~~~~~~v~-----~~----~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 143 NSNNTKVKNKIF-----TM----DTN-SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp CSSSSSSCCCEE-----EE----EEC-SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred eeeEEeeCCceE-----EE----Eec-CCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence 666555332221 11 122 2234443 589999999998 76543322221111122232222033444444
Q ss_pred ecCCceeEEEEEEcCCC------ceeeeeeeeccc----CccC--ceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 196 YAGSSQFHAYQINAMNG------ELLNHETAAFSG----GFVG--DVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 196 ~~g~~~~~v~ald~~tG------~~~w~~~v~~~~----~~s~--~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
...+ .+..+|..++ +........... +... .++.. .+.++++... .|.+++.++.+++
T Consensus 213 ~~dg---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 213 SIDG---RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRK 284 (342)
T ss_dssp ETTS---EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTTTE
T ss_pred ecCC---cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-CceEEEEcCccHh
Confidence 4433 4666666665 555444322110 0001 11111 3445666653 5788888888876
No 134
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.34 Score=53.92 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=87.4
Q ss_pred CCCEE-EEEeCCCEEEEEECC--CCccceEEEc-CCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeE----EEe
Q 003001 52 GRKRV-VVSTEENVIASLDLR--HGEIFWRHVL-GINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVW----ESF 123 (859)
Q Consensus 52 ~~~~V-yvat~~g~l~ALd~~--tG~ilWR~~l-~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW----~~~ 123 (859)
+++.+ ++++.+|.|...|.. +|+.+-.... ..+..+..+....++..+++++.++.++.|+..+|+..- ...
T Consensus 113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~ 192 (450)
T 2vdu_B 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL 192 (450)
T ss_dssp TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE
T ss_pred CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee
Confidence 45565 667788999999988 8877655431 111123333222234455556666799999998887542 111
Q ss_pred ccCccccCCcccccccccccCC---CeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 124 LRGSKHSKPLLLVPTNLKVDKD---SLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 124 ~~~~~ls~~~~~~~~~~~~~~~---~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
...... ..+ ....+ +..++. .|+.+...|..+|+....+...... .+..+... .+..++..+.+|
T Consensus 193 ~h~~~v----~~~----~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~s-d~~~l~s~~~d~ 262 (450)
T 2vdu_B 193 GHVSML----TDV----HLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH-FVSSICCG-KDYLLLSAGGDD 262 (450)
T ss_dssp ECSSCE----EEE----EEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS-CEEEEEEC-STTEEEEEESSS
T ss_pred cccCce----EEE----EEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC-ceEEEEEC-CCCEEEEEeCCC
Confidence 111111 111 11223 545553 3888999999998877664322111 12233323 444555444444
Q ss_pred CceeEEEEEEcCCCceeeeeee
Q 003001 199 SSQFHAYQINAMNGELLNHETA 220 (859)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v 220 (859)
.+..+|..+|+.+.....
T Consensus 263 ----~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 263 ----KIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp ----EEEEEETTTCCEEEEEEC
T ss_pred ----eEEEEECCCCcEeeeecc
Confidence 588899999998876653
No 135
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=96.15 E-value=0.12 Score=59.78 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=88.9
Q ss_pred CEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc------cC-------------CcccccccccccCC---CeEEEE--
Q 003001 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH------SK-------------PLLLVPTNLKVDKD---SLILVS-- 151 (859)
Q Consensus 96 ~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l------s~-------------~~~~~~~~~~~~~~---~~VvV~-- 151 (859)
..+|++++++|.|+|+|+. |+++|-+--. +.+ .. ..+.+. .+..+ +.+++.
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~-~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~---Dv~~~g~wrtvLvggm 159 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPS-AVFEKMHKLTARGYQGGAHQFYVDGSPVVA---DAFFGGAWHTVLIGSL 159 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCH-HHHHHCC-------CCHHHHHHHHCCCEEE---EEEETTEEEEEEEEEC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCH-HHHHHHHHHhccCccccCcceecCCCCEEE---EEEeCCcceEEEEEec
Confidence 3588889998999999998 9999997421 111 00 001110 01001 233442
Q ss_pred --eCCEEEEEEcCC---CcEEEEEeccC-cce-----eeeeEEEeecCCeEEEEE--ecC-CceeEEEEEEcCCCceeee
Q 003001 152 --SKGCLHAVSSID---GEILWTRDFAA-ESV-----EVQQVIQLDESDQIYVVG--YAG-SSQFHAYQINAMNGELLNH 217 (859)
Q Consensus 152 --~~g~l~ald~~t---G~~~W~~~~~~-~~~-----~~~~~v~~~~~~~vyvv~--~~g-~~~~~v~ald~~tG~~~w~ 217 (859)
.+..++|||..+ .+++|++.... +.+ .| .+.....+.-+.+++ +.. .....|+.+|+.+|..+|+
T Consensus 160 g~GG~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P-~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~ 238 (570)
T 3hx6_A 160 RAGGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKP-TVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRK 238 (570)
T ss_dssp TTSCSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCC-EEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEE
T ss_pred CCCCcEEEEEECCCCCCCceeEEECCCCccccCccccCC-EEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEE
Confidence 255799999876 88999998432 111 11 122111222222222 111 1246799999999999999
Q ss_pred eeeecc----cCccCceEEec---C---cEEEEEECCCCeEEEEEeecCe
Q 003001 218 ETAAFS----GGFVGDVALVS---S---DTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 218 ~~v~~~----~~~s~~~~~v~---~---~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
...... .+++. +.+++ + +.+++.|. .|+++.++|.+..
T Consensus 239 i~~~~~~~~~~Gls~-~~~~D~d~Dg~~D~~YaGDl-~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 239 LEVTGRTGVPNGLSS-PRLADNNSDGVADYAYAGDL-QGNLWRFDLIAGK 286 (570)
T ss_dssp EEECCSTTSCCCEEE-EEEECTTSSSBCCEEEEEET-TSEEEEEECSCSS
T ss_pred EecCCCCccCCcccc-ceEEecCCCCceeEEEEEeC-CCcEEEEEcCCCC
Confidence 875432 23333 33332 1 36778886 5999999998754
No 136
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.12 E-value=0.61 Score=50.15 Aligned_cols=188 Identities=14% Similarity=0.056 Sum_probs=104.1
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcC-CCcceeeeeeee-cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLG-INDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~-~~~~i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
..+++++.+|.|.-.|..+|+..-...+. ....+..+.... ++..++.++.++.++.||..+ ..+-........- .
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~-~ 164 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD-Y 164 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS-C
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC-C
Confidence 67999999999999999999887776542 223344442222 334555566677999999985 4444443322100 0
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
....+ ....++..++ . .+|.+...|. +|+..+......... ..+.....+..+++.+...+ .+..+|+
T Consensus 165 ~v~~~----~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~d~---~i~iwd~ 234 (383)
T 3ei3_B 165 WYCCV----DVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV--THAEFNPRCDWLMATSSVDA---TVKLWDL 234 (383)
T ss_dssp CEEEE----EEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE--EEEEECSSCTTEEEEEETTS---EEEEEEG
T ss_pred CeEEE----EECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE--EEEEECCCCCCEEEEEeCCC---EEEEEeC
Confidence 01111 1122344444 3 4899999998 788888876544332 22322223331444443332 4778898
Q ss_pred CC----CceeeeeeeecccCccCceEE-e-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 210 MN----GELLNHETAAFSGGFVGDVAL-V-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 210 ~t----G~~~w~~~v~~~~~~s~~~~~-v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+ +..+... .....+.. +.+ . .+..+++... .+.+++.++.+++
T Consensus 235 ~~~~~~~~~~~~~--~~~~~v~~-~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 235 RNIKDKNSYIAEM--PHEKPVNA-AYFNPTDSTKLLTTDQ-RNEIRVYSSYDWS 284 (383)
T ss_dssp GGCCSTTCEEEEE--ECSSCEEE-EEECTTTSCEEEEEES-SSEEEEEETTBTT
T ss_pred CCCCcccceEEEe--cCCCceEE-EEEcCCCCCEEEEEcC-CCcEEEEECCCCc
Confidence 88 4444333 11111111 111 1 2345666653 4788888888765
No 137
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.12 E-value=0.25 Score=50.24 Aligned_cols=183 Identities=11% Similarity=-0.001 Sum_probs=89.1
Q ss_pred CCEEEE-E-eCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 53 RKRVVV-S-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 53 ~~~Vyv-a-t~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
++++|+ + +..+.|..+|+.++.. +...........++. ...++.++++..++.|+.||+.++ ..+........
T Consensus 34 ~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~i~~~d~~~~-~~~~~~~~~~~-- 108 (270)
T 1rwi_B 34 AGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLA-VDGAGTVYVTDFNNRVVTLAAGSN-NQTVLPFDGLN-- 108 (270)
T ss_dssp TCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEE-ECTTCCEEEEETTTEEEEECTTCS-CCEECCCCSCS--
T ss_pred CCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeE-ECCCCCEEEEcCCCEEEEEeCCCc-eEeeeecCCcC--
Confidence 567998 7 5678999999876653 322221111122331 222333555543668999998644 44443322110
Q ss_pred CCcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
... ....+.++.+++.. ++.|+.++..++...+.... ....+..+. ...++.+|+....++ .+..+|
T Consensus 109 -~p~----~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~-~~~~g~l~v~~~~~~---~i~~~~ 177 (270)
T 1rwi_B 109 -YPE----GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT--GLNDPDGVA-VDNSGNVYVTDTDNN---RVVKLE 177 (270)
T ss_dssp -SEE----EEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC--SCCSCCCEE-ECTTCCEEEEEGGGT---EEEEEC
T ss_pred -CCc----ceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc--cCCCceeEE-EeCCCCEEEEECCCC---EEEEEe
Confidence 000 11233356777753 78999997666554432111 111123332 234567887665433 588889
Q ss_pred cCCCceeeeeeeecccCccC-ceEEe-cCcEEEEEECCCCeEEEEEeec
Q 003001 209 AMNGELLNHETAAFSGGFVG-DVALV-SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~-~~~~v-~~~~lv~~d~~~~~l~v~~L~s 255 (859)
..++...... ...+.. ..+.+ .++.+++.+..++.+...+...
T Consensus 178 ~~~~~~~~~~----~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 178 AESNNQVVLP----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp TTTCCEEECC----CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred cCCCceEeec----ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 8776543221 111111 12222 2234445554455666665543
No 138
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.08 E-value=0.24 Score=56.70 Aligned_cols=195 Identities=11% Similarity=0.140 Sum_probs=109.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCC--------ccceEEEcCCCcceeeeeeeecCEEEEEEcCC----CeEEEEeCCCCcEe
Q 003001 52 GRKRVVVSTEENVIASLDLRHG--------EIFWRHVLGINDVVDGIDIALGKYVITLSSDG----STLRAWNLPDGQMV 119 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG--------~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g----~~v~Ald~~tG~ll 119 (859)
+++.+++++.+|.|.-.|..+| +.+.+.... ...+..+....++..++.++.+ +.++.|| +|+.+
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~ 153 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSL 153 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEE
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc-cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcc
Confidence 4667888999999999998877 333333211 1223333222233344434433 5899998 78877
Q ss_pred EEEeccCccccCCcccccccccccCCC--eEEEE-eCCEEEEEEcCCCcEEEEEeccCcc-eeeeeEEEeec-CCeEEEE
Q 003001 120 WESFLRGSKHSKPLLLVPTNLKVDKDS--LILVS-SKGCLHAVSSIDGEILWTRDFAAES-VEVQQVIQLDE-SDQIYVV 194 (859)
Q Consensus 120 W~~~~~~~~ls~~~~~~~~~~~~~~~~--~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~v~~~~-~~~vyvv 194 (859)
.......... ....+ ..++ .++.. .+|.+...|..+|+.+.+....... .....+..... +..++..
T Consensus 154 ~~~~~~~~~v-~~~~~-------~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 154 GEVSGHSQRI-NACHL-------KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp EECCSCSSCE-EEEEE-------CSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred eeeecCCccE-EEEEE-------CCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence 7765544322 11111 1133 33333 4899999999999998887654330 01222322234 4445544
Q ss_pred EecCCceeEEEEEEcCCCceeeeeee---ecccCccCceEEecCcEEEEEECCCCeEEEEEeecCeeeEEEEe
Q 003001 195 GYAGSSQFHAYQINAMNGELLNHETA---AFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (859)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v---~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~ 264 (859)
+.+| .+..+|+.+|+.+..... .....+.. +.+..+..+++... .+.+++.++.+++ ....+.
T Consensus 226 ~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~-d~~i~~wd~~~~~-~~~~~~ 291 (615)
T 1pgu_A 226 GSDR----KISCFDGKSGEFLKYIEDDQEPVQGGIFA-LSWLDSQKFATVGA-DATIRVWDVTTSK-CVQKWT 291 (615)
T ss_dssp ETTC----CEEEEETTTCCEEEECCBTTBCCCSCEEE-EEESSSSEEEEEET-TSEEEEEETTTTE-EEEEEE
T ss_pred eCCC----eEEEEECCCCCEeEEecccccccCCceEE-EEEcCCCEEEEEcC-CCcEEEEECCCCc-EEEEEc
Confidence 4444 488899999998876621 11122221 11214456666654 4889999998877 244443
No 139
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.07 E-value=2.2 Score=46.67 Aligned_cols=145 Identities=11% Similarity=0.084 Sum_probs=82.9
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcc
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~ 134 (859)
+++.+-++.|+--|+.||+......+... ..+..+....++..++.++.++.|+.||..+|+.+.......... .
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v----~ 193 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV----G 193 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE----E
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCce----E
Confidence 44444588999999999999887777554 234444222344455556667799999999999999887654322 1
Q ss_pred cccccccccCCCeEEE-E-eCCEEEEEEcCCCcE-EEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 135 LVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEI-LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 135 ~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
.+ .. ++.+++ . .++.+...|...... ..+........ ..+.....+..+...+.+| .+...|..+
T Consensus 194 ~~----s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~--~~~~~~~~g~~l~s~~~D~----~v~i~~~~~ 261 (420)
T 4gga_A 194 SL----SW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV--CGLRWAPDGRHLASGGNDN----LVNVWPSAP 261 (420)
T ss_dssp EE----EE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE--EEEEECTTSSEEEEEETTS----CEEEEESSC
T ss_pred EE----ee--CCCEEEEEeCCCceeEeeecccceeeEEecccccce--eeeeecCCCCeeeeeeccc----cceEEeecc
Confidence 11 11 233444 3 377888777665443 23322221111 1121122334444433334 366678887
Q ss_pred Cceee
Q 003001 212 GELLN 216 (859)
Q Consensus 212 G~~~w 216 (859)
|+..+
T Consensus 262 ~~~~~ 266 (420)
T 4gga_A 262 GEGGW 266 (420)
T ss_dssp CSSCS
T ss_pred ccccc
Confidence 76543
No 140
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.07 E-value=1.6 Score=44.93 Aligned_cols=145 Identities=10% Similarity=0.035 Sum_probs=78.0
Q ss_pred CEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEecc
Q 003001 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 96 ~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~ 173 (859)
++++.++. ++.|+.||..+|+.+-...+..... ....+ ....++..++ . .||.+...|..+|+.+.+....
T Consensus 36 ~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~--~V~~v----~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h 108 (318)
T 4ggc_A 36 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGE--YISSV----AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 108 (318)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTC--CEEEE----EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCC--eEEEE----EECCCCCEEEEEECCCcEEEeecCCceeEEEecCc
Confidence 34666665 5699999999999988777654321 11111 1222444444 3 4999999999999999887654
Q ss_pred CcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEE
Q 003001 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVS 252 (859)
Q Consensus 174 ~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~ 252 (859)
.... ..+ ...+..+...+..+ .+...+..++...-........... .+.+. .+..++.... .+.+.+-+
T Consensus 109 ~~~~--~~~--~~~~~~l~s~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~~~-d~~i~iwd 178 (318)
T 4ggc_A 109 SARV--GSL--SWNSYILSSGSRSG----HIHHHDVRVAEHHVATLSGHSQEVC-GLRWAPDGRHLASGGN-DNLVNVWP 178 (318)
T ss_dssp SSCE--EEE--EEETTEEEEEETTS----EEEEEETTSSSCEEEEEECCSSCEE-EEEECTTSSEEEEEET-TSCEEEEE
T ss_pred cceE--EEe--ecCCCEEEEEecCC----ceEeeecCCCceeEEEEcCccCceE-EEEEcCCCCEEEEEec-CcceeEEE
Confidence 4332 111 22344444333332 3555555555433221111111111 11111 3345555553 47788888
Q ss_pred eecCe
Q 003001 253 FKNRK 257 (859)
Q Consensus 253 L~sg~ 257 (859)
+.+++
T Consensus 179 ~~~~~ 183 (318)
T 4ggc_A 179 SAPGE 183 (318)
T ss_dssp SSCBT
T ss_pred CCCCc
Confidence 87765
No 141
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.72 Score=48.78 Aligned_cols=199 Identities=9% Similarity=-0.025 Sum_probs=101.2
Q ss_pred CCEEEEEeCCCEEEEEECCCCc--cceEEEcCCCcceeeeeeeec--CEEEEEEcCCCeEEEEeCCCCcE--eEEEeccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGE--IFWRHVLGINDVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQM--VWESFLRG 126 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~--ilWR~~l~~~~~i~~l~~~~~--~~~V~Vs~~g~~v~Ald~~tG~l--lW~~~~~~ 126 (859)
+..+++++.+|.|.-.|.++|+ .+..... ....+..+..... +..++.++.++.++.||..++.. ........
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 6779999999999999999997 3333321 1122333322222 44555566677999999998843 22222222
Q ss_pred ccccCCcccccccc------cccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEec--cCcceeeeeEEEeecC--CeEEEE
Q 003001 127 SKHSKPLLLVPTNL------KVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDF--AAESVEVQQVIQLDES--DQIYVV 194 (859)
Q Consensus 127 ~~ls~~~~~~~~~~------~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~v~~~~~--~~vyvv 194 (859)
... ......+... ....++..++ . .+|.+...|..+++..|.... ......+..+.....+ +..++.
T Consensus 148 ~~v-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 148 IGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp TCE-EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred Cce-EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 111 0111111000 0000233344 3 488999999988886665432 1111112223222231 344444
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeecccCccCc---eEE-ecCcEEEEEECCCCeEEEEEeecCe
Q 003001 195 GYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGD---VAL-VSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~---~~~-v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+...+ .+..+|..+|+..+...+......... +.+ ..+..+++... .|.+++.++..+.
T Consensus 227 ~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 227 VSQDR---TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEG 289 (379)
T ss_dssp EETTS---CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEEETT
T ss_pred EeCCC---EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCCCCC
Confidence 43332 377778888875555443322222221 111 13445555554 5788888887643
No 142
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.03 E-value=0.94 Score=47.84 Aligned_cols=173 Identities=8% Similarity=-0.021 Sum_probs=95.0
Q ss_pred CCCEEEEEeCC------------CEEEEEECCCCccceEEEcCCCcceee-eeeeecCEEEEEEcCC--------CeEEE
Q 003001 52 GRKRVVVSTEE------------NVIASLDLRHGEIFWRHVLGINDVVDG-IDIALGKYVITLSSDG--------STLRA 110 (859)
Q Consensus 52 ~~~~Vyvat~~------------g~l~ALd~~tG~ilWR~~l~~~~~i~~-l~~~~~~~~V~Vs~~g--------~~v~A 110 (859)
.++.||+.... +.+..+|+.+++ |+..-+.+..-.. .....++.+++++|.+ ..+..
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEE
Confidence 46677765541 238899999875 9765332211111 1123567777776621 45999
Q ss_pred EeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeC--------CEEEEEEcCCCcEEEEEeccCcce-eeee
Q 003001 111 WNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESV-EVQQ 181 (859)
Q Consensus 111 ld~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~--------g~l~ald~~tG~~~W~~~~~~~~~-~~~~ 181 (859)
+|+.+++ |+.-..-+. +..... ....++.++++++ ..+.++|..+. .|+.-.+.+.- ....
T Consensus 122 ~d~~~~~--W~~~~~~p~-----~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~ 191 (315)
T 4asc_A 122 YDRLSFK--WGESDPLPY-----VVYGHT-VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFG 191 (315)
T ss_dssp EETTTTE--EEECCCCSS-----CCBSCE-EEEETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCE
T ss_pred ECCCCCc--EeECCCCCC-----ccccee-EEEECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceE
Confidence 9998875 886433221 111111 1222567777632 36889998876 68764432211 0111
Q ss_pred EEEeecCCeEEEEEecCC--ceeEEEEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEE
Q 003001 182 VIQLDESDQIYVVGYAGS--SQFHAYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVT 240 (859)
Q Consensus 182 ~v~~~~~~~vyvv~~~g~--~~~~v~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~ 240 (859)
+ ...++.+|++|-..+ ..-.+..+|+.++ .|+..-..|...... +...++.+++.
T Consensus 192 ~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~l~v~ 249 (315)
T 4asc_A 192 A--TVHDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSLVGTLYAI 249 (315)
T ss_dssp E--EEETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred E--EEECCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEECCEEEEE
Confidence 2 235788998875432 1235788999887 688754445444442 33334444443
No 143
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.01 E-value=1.9 Score=45.37 Aligned_cols=192 Identities=16% Similarity=0.157 Sum_probs=102.8
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
.++..++.++.++.|.-.|.++|+.+-+..-. ...+..+.....+..++.++.++.++.||.. |..+-.........
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v- 151 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGH-KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWV- 151 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCE-
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcE-
Confidence 35677899999999999999999876554322 2223333222233445445667799999985 55554443332221
Q ss_pred CCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
......+.. ....++..++ . .|+.+...|..+++..-.+...... ...+..+..+..+...+.+| .+..+|
T Consensus 152 ~~~~~~~~~-~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~sp~g~~l~s~~~dg----~i~iwd 224 (319)
T 3frx_A 152 SQVRVVPNE-KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDG----EIMLWN 224 (319)
T ss_dssp EEEEECCC-------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC--EEEEEECTTSSEEEEEETTC----EEEEEE
T ss_pred EEEEEccCC-CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCc--EEEEEEcCCCCEEEEEeCCC----eEEEEE
Confidence 111111100 0011233344 3 4899999999998876655433222 22232222333344333333 588889
Q ss_pred cCCCceeeeeeeecccCccCceEE-ecCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~-v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+++.+..... +..+.. +.+ ..+..+++... +.+.+.++..+.
T Consensus 225 ~~~~~~~~~~~~--~~~v~~-~~~sp~~~~la~~~~--~~i~v~~~~~~~ 269 (319)
T 3frx_A 225 LAAKKAMYTLSA--QDEVFS-LAFSPNRYWLAAATA--TGIKVFSLDPQY 269 (319)
T ss_dssp TTTTEEEEEEEC--CSCEEE-EEECSSSSEEEEEET--TEEEEEEETTEE
T ss_pred CCCCcEEEEecC--CCcEEE-EEEcCCCCEEEEEcC--CCcEEEEeCcCe
Confidence 999998876642 211111 111 13345555543 356777766554
No 144
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.97 E-value=0.51 Score=52.34 Aligned_cols=188 Identities=16% Similarity=0.083 Sum_probs=94.4
Q ss_pred cCCCEEEEEeCCC---EEEEEECCCCccceEEEcCCCcceeeeeee-ecCEEEEEEcC--CCeEEEEeCCCCcEeEEEec
Q 003001 51 TGRKRVVVSTEEN---VIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 51 ~~~~~Vyvat~~g---~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~--g~~v~Ald~~tG~llW~~~~ 124 (859)
++++.++.++.++ .|...|.++|+..- .......+..+... .++.+++.++. ...|+.||..+|+.. +...
T Consensus 188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~~--l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~ 264 (415)
T 2hqs_A 188 PDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTD 264 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEE--EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCC
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCcEEE--eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcC
Confidence 4566677777654 99999999998752 22222222222112 34445555443 246999999999863 2111
Q ss_pred cCccccCCcccccccccccCCCe-EEEEe--CC--EEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSL-ILVSS--KG--CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~-VvV~~--~g--~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
..... ... ....++. +++.+ +| .|+.+|..+|+..-- .... . ....+..+..+..+++.+..++
T Consensus 265 ~~~~~-~~~-------~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l-~~~~-~-~~~~~~~spdG~~l~~~~~~~g 333 (415)
T 2hqs_A 265 GRSNN-TEP-------TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-TWEG-S-QNQDADVSSDGKFMVMVSSNGG 333 (415)
T ss_dssp CSSCE-EEE-------EECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-CCSS-S-EEEEEEECTTSSEEEEEEECSS
T ss_pred CCCcc-cce-------EECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE-ecCC-C-cccCeEECCCCCEEEEEECcCC
Confidence 11111 011 1222444 44333 33 788889888874321 1111 1 1222322345555665554432
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCC--eEEEEEeecCe
Q 003001 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRS--ILVTVSFKNRK 257 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~--~l~v~~L~sg~ 257 (859)
...+..+|+.+|+... +....... .+.+- .+..+++...+.+ .+++.++..+.
T Consensus 334 -~~~i~~~d~~~~~~~~---l~~~~~~~-~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 334 -QQHIAKQDLATGGVQV---LSSTFLDE-TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp -CEEEEEEETTTCCEEE---CCCSSSCE-EEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred -ceEEEEEECCCCCEEE---ecCCCCcC-CeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 3468889999998632 11111111 12221 3344444433333 67777776543
No 145
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.11 Score=56.36 Aligned_cols=199 Identities=6% Similarity=0.039 Sum_probs=103.8
Q ss_pred CCCEEEEEeCCCEEEEEECCC---CccceEEEcCCCcceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCc------EeEE
Q 003001 52 GRKRVVVSTEENVIASLDLRH---GEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQ------MVWE 121 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~t---G~ilWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~------llW~ 121 (859)
++..+++++.+|.|.-.|..+ |...-+........+..+... .++..++.++.++.|+.||..+++ ....
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 466788899999999999988 332222211222233333222 224455556667799999999997 4333
Q ss_pred EeccCccccCCcccccccccccCC-CeEEEE--eCCEEEEEEcCCCcEEEEEeccCc----ceeeeeEEEeecCCeEEEE
Q 003001 122 SFLRGSKHSKPLLLVPTNLKVDKD-SLILVS--SKGCLHAVSSIDGEILWTRDFAAE----SVEVQQVIQLDESDQIYVV 194 (859)
Q Consensus 122 ~~~~~~~ls~~~~~~~~~~~~~~~-~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~----~~~~~~~v~~~~~~~vyvv 194 (859)
...... .......+ ....+ +.+++. .+|.+...|..+|+...+...... ......+.....+..+++.
T Consensus 158 ~~~~~~-~~~~v~~~----~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 158 PGQSMS-SVDEVISL----AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCCSCC-SSCCCCEE----EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccC-CCCCeeEE----EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 211000 00011111 11212 344443 489999999999999888876421 1112223222233344444
Q ss_pred EecCCceeEEEEEEcCCCc-eeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 195 GYAGSSQFHAYQINAMNGE-LLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~-~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+..++....+..+|..++. ++..........+. .+.+- ++.++++... .+.+++.++.+++
T Consensus 233 ~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~~l~s~~~-dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 233 ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL-SLDWCHQDEHLLLSSGR-DNTVLLWNPESAE 296 (416)
T ss_dssp EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEE-EEEECSSCSSCEEEEES-SSEEEEECSSSCC
T ss_pred EECCCCCceEEEEeCCCCCCCcEEeecCccCcee-EEEeCCCCCCeEEEEeC-CCCEEEeeCCCCc
Confidence 4443211137778888873 33333201111111 11111 3445666654 5789888888876
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.91 E-value=2 Score=44.67 Aligned_cols=191 Identities=13% Similarity=0.143 Sum_probs=97.0
Q ss_pred cCCCEEEEEeCC-CEEEEEECC--CCccceEEEcCCCcceeeeeeeecCEEEEE-EcCCCeEEEEeCCCCc---EeEEEe
Q 003001 51 TGRKRVVVSTEE-NVIASLDLR--HGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQ---MVWESF 123 (859)
Q Consensus 51 ~~~~~Vyvat~~-g~l~ALd~~--tG~ilWR~~l~~~~~i~~l~~~~~~~~V~V-s~~g~~v~Ald~~tG~---llW~~~ 123 (859)
++++.+|+++.. +.|..++.. +|+..=...+.....+..+....++..+++ +..++.++.||..+|. ......
T Consensus 47 pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 126 (343)
T 1ri6_A 47 PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 126 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc
Confidence 346678888876 888775554 776432222222212223322223344444 4446789999995554 333333
Q ss_pred ccCccccCCcccccccccccCCC-eEEEE--eCCEEEEEEcCC-CcEEEE----EeccCcceeeeeEEEeecCCeEEEEE
Q 003001 124 LRGSKHSKPLLLVPTNLKVDKDS-LILVS--SKGCLHAVSSID-GEILWT----RDFAAESVEVQQVIQLDESDQIYVVG 195 (859)
Q Consensus 124 ~~~~~ls~~~~~~~~~~~~~~~~-~VvV~--~~g~l~ald~~t-G~~~W~----~~~~~~~~~~~~~v~~~~~~~vyvv~ 195 (859)
..... ... ....++ .+++. .++.+..+|..+ |+..-. .....+ ..+..+.....+..+|+.+
T Consensus 127 ~~~~~--~~~-------~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 127 GLDGC--HSA-------NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-AGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp CCTTB--CCC-------EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-CCEEEEEECTTSSEEEEEE
T ss_pred CCCCc--eEE-------EECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-CCcceEEECCCCCEEEEEe
Confidence 22211 111 122234 46664 489999999987 865432 222211 1233343333455577665
Q ss_pred ecCCceeEEEEEEc--CCCceeeeeeee-cccCccC-----ceEEe-cCcEEEEEECCCCeEEEEEee
Q 003001 196 YAGSSQFHAYQINA--MNGELLNHETAA-FSGGFVG-----DVALV-SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 196 ~~g~~~~~v~ald~--~tG~~~w~~~v~-~~~~~s~-----~~~~v-~~~~lv~~d~~~~~l~v~~L~ 254 (859)
...+ .+..+|. .+|+......+. .+.+..+ .+.+- .+..+++.+...+.+.+.++.
T Consensus 197 ~~~~---~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 197 ELNS---SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp TTTT---EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCC---EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 3332 3566666 567664333322 2322221 12221 234666666666888888887
No 147
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.85 E-value=0.58 Score=50.83 Aligned_cols=190 Identities=14% Similarity=0.144 Sum_probs=104.6
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCC----cceeeeeee-ecCEEEEEEcCCCeEEEEeCC-CCcEeEEEeccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----DVVDGIDIA-LGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRG 126 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~----~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~-tG~llW~~~~~~ 126 (859)
+.+++.++.++.|.-.|.++|+.+........ ..+..+... .++..++.++.++.|+.||.. +++.+-......
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~ 249 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE 249 (380)
T ss_dssp SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS
T ss_pred CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC
Confidence 45699999999999999999998765532211 112222111 234455546667799999987 456655554433
Q ss_pred ccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcce-----eeeeEEEeecCCeEEEEEecCC
Q 003001 127 SKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESV-----EVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~-----~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
... ....+ ..++..++. .||.+...|..+|+.+-.+....... ....+..+..+..++ .+...+
T Consensus 250 ~~v-~~v~~-------~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg 320 (380)
T 3iz6_a 250 GDI-NSVKF-------FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF-AGYSNG 320 (380)
T ss_dssp SCC-CEEEE-------CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE-EECTTS
T ss_pred CCe-EEEEE-------ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE-EEECCC
Confidence 322 11112 224555553 49999999999999887765432110 011222222344444 444433
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccC--ceEEe--cCcEEEEEECCCCeEEEEEeecC
Q 003001 200 SQFHAYQINAMNGELLNHETAAFSGGFVG--DVALV--SSDTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~--~~~~v--~~~~lv~~d~~~~~l~v~~L~sg 256 (859)
.+..+|..+|+......... .+-.+ .++-. .+..++... ..+.+.+-++..+
T Consensus 321 ---~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 321 ---DCYVWDTLLAEMVLNLGTLQ-NSHEGRISCLGLSSDGSALCTGS-WDKNLKIWAFSGH 376 (380)
T ss_dssp ---CEEEEETTTCCEEEEECCSC-SSCCCCCCEEEECSSSSEEEEEC-TTSCEEEEECCSS
T ss_pred ---CEEEEECCCCceEEEEeccc-CCCCCceEEEEECCCCCEEEEee-CCCCEEEEecCCC
Confidence 48888999998776542111 11111 22222 334555554 3466666666543
No 148
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.81 E-value=0.67 Score=49.93 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=48.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
++..+.+++++| +.-.|..+++...+..... +..... ..++.++++++.++.|+.||..+|+.+-+.....++
T Consensus 30 dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v 103 (355)
T 3vu4_A 30 DQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV 103 (355)
T ss_dssp TSSEEEEECSSE-EEEEEETTEEEEEEEECSC---CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE
T ss_pred CCCEEEEEcCCE-EEEEecCCcceeeeeecCC---eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce
Confidence 455566666665 5577888888888776643 211211 234445555666679999999999999888765543
No 149
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.80 E-value=0.44 Score=49.52 Aligned_cols=148 Identities=8% Similarity=0.041 Sum_probs=76.7
Q ss_pred CCEEEEE--------eCCCEEEEEECCCCccceEEEcC----CCcceeeeeeeecC-EEEEEEcCCCeEEEEeCCCCcEe
Q 003001 53 RKRVVVS--------TEENVIASLDLRHGEIFWRHVLG----INDVVDGIDIALGK-YVITLSSDGSTLRAWNLPDGQMV 119 (859)
Q Consensus 53 ~~~Vyva--------t~~g~l~ALd~~tG~ilWR~~l~----~~~~i~~l~~~~~~-~~V~Vs~~g~~v~Ald~~tG~ll 119 (859)
++.+|++ +..+.|..+|+++|+.. +...+ ....+.++. ...+ +.+++++.++.|+.||.. |+..
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~-~~~~~g~l~v~~~~~~l~~~d~~-g~~~ 104 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQ-CDRDANQLFVADMRLGLLVVQTD-GTFE 104 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEE-ECSSSSEEEEEETTTEEEEEETT-SCEE
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEE-EecCCCcEEEEECCCCEEEEeCC-CCEE
Confidence 5678888 67899999999999863 12221 001122331 2233 455555544579999998 8875
Q ss_pred EE-EeccCccccCCcccccccccccCCCeEEEEe--C---------------CEEEEEEcCCCcEEEEEeccCcceeeee
Q 003001 120 WE-SFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K---------------GCLHAVSSIDGEILWTRDFAAESVEVQQ 181 (859)
Q Consensus 120 W~-~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~---------------g~l~ald~~tG~~~W~~~~~~~~~~~~~ 181 (859)
.- ...... . . ...+.....+.++.+++.. + +.|+++|.. |+......... .+..
T Consensus 105 ~~~~~~~~~-~--~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~---~~~~ 176 (314)
T 1pjx_A 105 EIAKKDSEG-R--R-MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ---FPNG 176 (314)
T ss_dssp ECCSBCTTS-C--B-CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES---SEEE
T ss_pred EEEeccCCC-c--c-ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC---Ccce
Confidence 33 221111 0 0 0001111334467777753 2 689999876 77654322111 1222
Q ss_pred EEEee---cCC-eEEEEEecCCceeEEEEEEcC-CCce
Q 003001 182 VIQLD---ESD-QIYVVGYAGSSQFHAYQINAM-NGEL 214 (859)
Q Consensus 182 ~v~~~---~~~-~vyvv~~~g~~~~~v~ald~~-tG~~ 214 (859)
+.... .++ .+|+.....+ .+..+|.. +|+.
T Consensus 177 i~~~~~~d~dg~~l~v~~~~~~---~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAETPTK---KLWSYDIKGPAKI 211 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTT---EEEEEEEEETTEE
T ss_pred EEEecccCCCCCEEEEEECCCC---eEEEEECCCCCcc
Confidence 32220 233 5776544332 46777765 5654
No 150
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.72 E-value=0.32 Score=49.40 Aligned_cols=145 Identities=10% Similarity=0.051 Sum_probs=78.2
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++.+|+++..+.|..+|+.+ ...+...........++. ...++.++++ ..++.|+.||..++...+.. ... .
T Consensus 77 ~g~l~v~~~~~~i~~~d~~~-~~~~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~-~-- 149 (270)
T 1rwi_B 77 AGTVYVTDFNNRVVTLAAGS-NNQTVLPFDGLNYPEGLA-VDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--FTG-L-- 149 (270)
T ss_dssp TCCEEEEETTTEEEEECTTC-SCCEECCCCSCSSEEEEE-ECTTCCEEEEEGGGTEEEEECTTCCSCEECC--CCS-C--
T ss_pred CCCEEEEcCCCEEEEEeCCC-ceEeeeecCCcCCCcceE-ECCCCCEEEEECCCCEEEEEECCCceeEeec--ccc-C--
Confidence 56699998888999999864 445544332211222331 2223345554 34568999976655443321 111 1
Q ss_pred CcccccccccccCCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
..+.....+.++.+++.. ++.|+.+|..++..... ..... ..+..+. ...++.+|+....++ .+..+|+
T Consensus 150 ---~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~-~~p~~i~-~d~~g~l~v~~~~~~---~v~~~~~ 220 (270)
T 1rwi_B 150 ---NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL-PFTDI-TAPWGIA-VDEAGTVYVTEHNTN---QVVKLLA 220 (270)
T ss_dssp ---CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC-CCSSC-CSEEEEE-ECTTCCEEEEETTTS---CEEEECT
T ss_pred ---CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee-cccCC-CCceEEE-ECCCCCEEEEECCCC---cEEEEcC
Confidence 001111334356777763 68999999877665432 11111 1233343 234568888665433 3788887
Q ss_pred CCCc
Q 003001 210 MNGE 213 (859)
Q Consensus 210 ~tG~ 213 (859)
.++.
T Consensus 221 ~~~~ 224 (270)
T 1rwi_B 221 GSTT 224 (270)
T ss_dssp TCSC
T ss_pred CCCc
Confidence 5543
No 151
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.62 E-value=2.4 Score=43.74 Aligned_cols=146 Identities=12% Similarity=0.009 Sum_probs=73.3
Q ss_pred CC-EEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 53 RK-RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 53 ~~-~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
++ .+++.+..+.|..+|+.+| .+........+.++. ...++.++++. .++.|+.||+.+|+...-........
T Consensus 39 g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~-~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~- 113 (296)
T 3e5z_A 39 RSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHC-LNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKK- 113 (296)
T ss_dssp GTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEE-ECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEE-
T ss_pred CCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceee-ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCC-
Confidence 44 3556677899999999988 232222222233442 22233344444 34689999999998765433211100
Q ss_pred CCcccccccccccCCCeEEEEe-------------------CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeE
Q 003001 131 KPLLLVPTNLKVDKDSLILVSS-------------------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQI 191 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV~~-------------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~v 191 (859)
...+.....+.++.+++.. .+.|+.++.. |+..-..... ..+..+.. ..++..
T Consensus 114 ---~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~---~~~~gi~~-s~dg~~ 185 (296)
T 3e5z_A 114 ---LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR---VKPNGLAF-LPSGNL 185 (296)
T ss_dssp ---CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC---SSEEEEEE-CTTSCE
T ss_pred ---CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC---CCCccEEE-CCCCCE
Confidence 0000011334456677631 3578888876 6643222111 11223322 234444
Q ss_pred EEEEecCCceeEEEEEEcC-CCce
Q 003001 192 YVVGYAGSSQFHAYQINAM-NGEL 214 (859)
Q Consensus 192 yvv~~~g~~~~~v~ald~~-tG~~ 214 (859)
++.....+ .+..+|.. +|+.
T Consensus 186 lv~~~~~~---~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 186 LVSDTGDN---ATHRYCLNARGET 206 (296)
T ss_dssp EEEETTTT---EEEEEEECSSSCE
T ss_pred EEEeCCCC---eEEEEEECCCCcC
Confidence 44333222 47777775 6765
No 152
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=95.50 E-value=2.1 Score=44.71 Aligned_cols=148 Identities=11% Similarity=0.056 Sum_probs=76.6
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++.+|+.+ ..+.|..+|+++|+.. ...++. .+.++....++. ++++. ++.|+.||..+|+...-.......
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~--~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~--- 95 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDA--PVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDNDK--- 95 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE-EEECSS--CEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTTC---
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEeCCC--ceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCCC---
Confidence 56676665 5789999999998762 222222 233442222333 45555 357999999999876544432110
Q ss_pred CcccccccccccCCCeEEEEe-------------CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 132 PLLLVPTNLKVDKDSLILVSS-------------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~~-------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
. ...+.....+.++.+++.. .+.|++++.. |+..-..... ..+..+..+..+..+|+.....
T Consensus 96 ~-~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~---~~pngi~~spdg~~lyv~~~~~ 170 (297)
T 3g4e_A 96 K-NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQV---DISNGLDWSLDHKIFYYIDSLS 170 (297)
T ss_dssp S-SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEE---SBEEEEEECTTSCEEEEEEGGG
T ss_pred C-CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecc---ccccceEEcCCCCEEEEecCCC
Confidence 0 0001111334456777742 2478888864 5432211110 0122232223455688765433
Q ss_pred CceeEEEEEE--cCCCceee
Q 003001 199 SSQFHAYQIN--AMNGELLN 216 (859)
Q Consensus 199 ~~~~~v~ald--~~tG~~~w 216 (859)
+ ++..+| +.+|....
T Consensus 171 ~---~i~~~~~d~~~G~~~~ 187 (297)
T 3g4e_A 171 Y---SVDAFDYDLQTGQISN 187 (297)
T ss_dssp T---EEEEEEECTTTCCEEE
T ss_pred C---cEEEEeccCCCCcccC
Confidence 2 355555 47887643
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=95.45 E-value=1.8 Score=46.60 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=82.2
Q ss_pred cCCCEEEEEeCCCEEEEEECC-CCccceEEEcCCCcceeeeeeeecCE--EEEEEc-------------CCCeEEEEeCC
Q 003001 51 TGRKRVVVSTEENVIASLDLR-HGEIFWRHVLGINDVVDGIDIALGKY--VITLSS-------------DGSTLRAWNLP 114 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~-tG~ilWR~~l~~~~~i~~l~~~~~~~--~V~Vs~-------------~g~~v~Ald~~ 114 (859)
.+++.+|+++.. .+..+|.. +|+..........+....+....++. .++++. .++.++.|+..
T Consensus 49 pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~ 127 (365)
T 1jof_A 49 HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS 127 (365)
T ss_dssp TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC
T ss_pred CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccC
Confidence 456679998887 89999887 89875433221111111221122334 233332 45689999986
Q ss_pred -CCcEeEEEecc---CccccCCcccccccccccCCC-eEEEEe--CCEEEEEEcC-CCcEEEE--EeccCcceeeeeEEE
Q 003001 115 -DGQMVWESFLR---GSKHSKPLLLVPTNLKVDKDS-LILVSS--KGCLHAVSSI-DGEILWT--RDFAAESVEVQQVIQ 184 (859)
Q Consensus 115 -tG~llW~~~~~---~~~ls~~~~~~~~~~~~~~~~-~VvV~~--~g~l~ald~~-tG~~~W~--~~~~~~~~~~~~~v~ 184 (859)
+|++.=..... .... ...+ ....++ .+++.. ++.++.+|.. +|+..-. ...+.....+..+..
T Consensus 128 ~~g~~~~~~~~~~~~~~~~---~~~~----~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~ 200 (365)
T 1jof_A 128 ETGKLEKNVQNYEYQENTG---IHGM----VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM 200 (365)
T ss_dssp TTCCEEEEEEEEECCTTCC---EEEE----EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred CCCcCcceEeeEEeCCCCc---ceEE----EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEE
Confidence 68765332211 1100 0011 222244 455543 6789999988 8986432 222211222555543
Q ss_pred eecCCeEEEEEecCCceeEEEEEEcCCCcee
Q 003001 185 LDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (859)
Q Consensus 185 ~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~ 215 (859)
+..+..+|+.+..+ ..+.++.+|..+|+..
T Consensus 201 spdg~~l~v~~~~~-~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 201 HPTGNYLYALMEAG-NRICEYVIDPATHMPV 230 (365)
T ss_dssp CTTSSEEEEEETTT-TEEEEEEECTTTCCEE
T ss_pred CCCCCEEEEEECCC-CeEEEEEEeCCCCcEE
Confidence 44555677755433 3455666677789864
No 154
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=95.40 E-value=1.5 Score=47.48 Aligned_cols=71 Identities=8% Similarity=0.036 Sum_probs=45.6
Q ss_pred cCCCEEEEEe--CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 51 TGRKRVVVST--EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 51 ~~~~~Vyvat--~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
+++..+.+++ .++.|.-.|+++|+.+.......+ +..+....++..++.+++ +.++.|+..+|+.+-+...
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~--V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGE--VKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTD 215 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSC--CCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECC
T ss_pred CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCc--eEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeec
Confidence 3455676766 579999999999999888764433 444422223334443444 4688888888887655443
No 155
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.36 E-value=4.1 Score=44.51 Aligned_cols=190 Identities=13% Similarity=0.092 Sum_probs=102.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEe-EEEeccCcccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV-WESFLRGSKHS 130 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~ll-W~~~~~~~~ls 130 (859)
++..+++++.+|.|.-.|.++|+.+....-... .+..+ ..++..++.++.++.++.||....... ..........
T Consensus 158 dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~-~v~~~--s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~- 233 (420)
T 4gga_A 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA-RVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV- 233 (420)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE-
T ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC-ceEEE--eeCCCEEEEEeCCCceeEeeecccceeeEEecccccce-
Confidence 567799999999999999999998877543222 22233 233445555666779999998765433 3333322211
Q ss_pred CCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEE----EeccCcceeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWT----RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~----~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
... ....++..++ . .||.+...+..+|+..+. ....... ...+.....+..+++.+. |.....+
T Consensus 234 ---~~~----~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~--V~~~~~~p~~~~~la~~~-gs~D~~I 303 (420)
T 4gga_A 234 ---CGL----RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA--VKAVAWCPWQSNVLATGG-GTSDRHI 303 (420)
T ss_dssp ---EEE----EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC--EEEEEECTTCTTEEEEEE-CTTTCEE
T ss_pred ---eee----eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCc--eeeeeeCCCcccEEEEEe-ecCCCEE
Confidence 111 1111344444 3 488888888888764322 1111111 111211223344443322 2222357
Q ss_pred EEEEcCCCceeeeeeeecccCccCceEEecCcEEEEEE-CCCCeEEEEEeecCe
Q 003001 205 YQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLD-TTRSILVTVSFKNRK 257 (859)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d-~~~~~l~v~~L~sg~ 257 (859)
..+|..+|+....... ...+...+....++.+++.. ...+.+++-++.+++
T Consensus 304 ~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 304 RIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp EEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred EEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 7789999998876642 22221111112334444443 245788888888876
No 156
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.35 E-value=0.99 Score=49.90 Aligned_cols=192 Identities=13% Similarity=0.018 Sum_probs=98.5
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCC-Ccceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGI-NDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~-~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
+..|.+++.+|.|.-.|..+|+..=...+.. ...+..+... .++..++.++.++.|+.||..++.............
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~- 210 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI- 210 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSC-
T ss_pred CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCc-
Confidence 4568889999999999998887654444432 2334444222 233344445566799999998776654443332211
Q ss_pred CCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
.... .....++..++. .+|.+...|.. |+.+++....... ...+.....+..+++.+...+ .+..+|
T Consensus 211 ---~~~~--~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~--v~~v~~~p~~~~~~~s~s~d~---~v~iwd 279 (435)
T 4e54_B 211 ---WFCS--LDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKK--VTHVALNPCCDWFLATASVDQ---TVKIWD 279 (435)
T ss_dssp ---CCCC--EEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSC--EEEEEECTTCSSEEEEEETTS---BCCEEE
T ss_pred ---cEEE--EEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccce--EEeeeecCCCceEEEEecCcc---eeeEEe
Confidence 1111 012224444443 38888888864 5555544332222 112221223344444443322 355668
Q ss_pred cCCCceeeeeeeecc--cCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFS--GGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~--~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+.+++..-....... ..+..-++-..+..++.... .+.+++-++.++.
T Consensus 280 ~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~-D~~i~iwd~~~~~ 329 (435)
T 4e54_B 280 LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ-KSEIRVYSASQWD 329 (435)
T ss_dssp TTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES-SSCEEEEESSSSS
T ss_pred cccccccceEEEeeeccccccceeECCCCCeeEEEcC-CCEEEEEECCCCc
Confidence 777664432211111 11111000013446665554 4788888888876
No 157
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.31 E-value=2.4 Score=44.57 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=79.6
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc--C-CCeEEEEeCCCCcEeEEEeccCcc
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS--D-GSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~--~-g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
++++|+++ ..+.|..+|+.++ ..-....+. ...++. ...++.++++. . +..+..+|..+|++..-.......
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~--~p~gia-~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 117 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDGN-QQIHATVEG--KVSGLA-FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAI 117 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTCC-EEEEEECSS--EEEEEE-ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCS
T ss_pred CCCEEEEeCCCCeEEEECCCCc-eEEEEeCCC--CceeEE-EcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcc
Confidence 56799987 6789999998754 332223322 233442 22233345443 2 236889999999976544432211
Q ss_pred ccCCcccccccccccCCCeEEEEe--CCEEEEEEcCCCc-EEEEEec------cCcce-eeeeEEEeecCCeEEEEEecC
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGE-ILWTRDF------AAESV-EVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~tG~-~~W~~~~------~~~~~-~~~~~v~~~~~~~vyvv~~~g 198 (859)
. + -+ .....++.+++.. +|.|+.+|..+|+ .+|.... ..... .+..+ +..++.+|+.....
T Consensus 118 ~----~-~g--~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 118 F----L-NG--ITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK 188 (306)
T ss_dssp C----E-EE--EEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred c----c-Cc--ccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence 1 0 00 0112245666653 7899999998875 3453321 11111 12233 34567888765443
Q ss_pred CceeEEEEEEcCC-Cce
Q 003001 199 SSQFHAYQINAMN-GEL 214 (859)
Q Consensus 199 ~~~~~v~ald~~t-G~~ 214 (859)
+ ++..+|... |+.
T Consensus 189 ~---~I~~~~~~~~g~~ 202 (306)
T 2p4o_A 189 M---LLLRIPVDSTDKP 202 (306)
T ss_dssp T---EEEEEEBCTTSCB
T ss_pred C---EEEEEEeCCCCCC
Confidence 3 577788764 543
No 158
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=95.28 E-value=0.47 Score=54.68 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=79.8
Q ss_pred EEEEECCCCccceEEEcCCC-ccee-------------eeeee--ecC--EEEEEEcC--CCeEEEEeCCCCcE--eEEE
Q 003001 65 IASLDLRHGEIFWRHVLGIN-DVVD-------------GIDIA--LGK--YVITLSSD--GSTLRAWNLPDGQM--VWES 122 (859)
Q Consensus 65 l~ALd~~tG~ilWR~~l~~~-~~i~-------------~l~~~--~~~--~~V~Vs~~--g~~v~Ald~~tG~l--lW~~ 122 (859)
|..+|-+||+++|+..+..+ ..+. ...++ .++ .+|+..+. ...|.|||..+|++ +|++
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 89999999999999998532 1111 01111 122 24444332 24699999999975 9999
Q ss_pred eccCcc---c-c--CCcccccccccccCCC--eEEEEeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEee---cCCeE
Q 003001 123 FLRGSK---H-S--KPLLLVPTNLKVDKDS--LILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLD---ESDQI 191 (859)
Q Consensus 123 ~~~~~~---l-s--~~~~~~~~~~~~~~~~--~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~---~~~~v 191 (859)
....+. + . ...+.+. .++.|+ .|++ ++. ++| .+|+.+|......+... .+.+.. .+-.+
T Consensus 311 d~~~~~~~~~~gqg~h~~~va---DVDgDG~dEIv~--Gs~--~iD-~dG~~L~st~~gHGDa~--hv~dldP~r~GlEv 380 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIA---DVDGDGKDEIIF--GSM--AVD-HDGKGMYSTGLGHGDAL--HTGDLDPGRPGLEV 380 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEE---CCSSSSSCEEEE--TTE--EEC-TTSCEEEECSCCCCSCE--EEECCCTTSSSCEE
T ss_pred cCCCCCcccccccCCCCCeeE---eCCCCCCceEEE--eee--EEC-CCCCEeeeCCCCCCCee--EEeecCCCCCCcEE
Confidence 886532 1 0 0112222 445444 3333 222 456 89999999877543320 111110 12245
Q ss_pred EEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 192 YVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 192 yvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
|.+.-.+....-..-.|+.||+++|+..
T Consensus 381 ~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 381 FQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp EEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred EEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 5433221110013347999999999984
No 159
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.25 E-value=3.9 Score=43.66 Aligned_cols=150 Identities=9% Similarity=0.062 Sum_probs=87.2
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCC--cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~--~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
+..+++++.+|.|.-.|.++ +.+-....... ..+..+....++..++.++.++.|+.||. +|+.++.........
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v- 207 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV- 207 (383)
T ss_dssp EEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE-
T ss_pred CCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE-
Confidence 45688889999999999885 33333322221 12333322233445555666779999998 799998887654332
Q ss_pred CCcccccccccccCCCe-EEE-E-eCCEEEEEEcCC----CcEEEEEeccCcceeeeeEEEee-cCCeEEEEEecCCcee
Q 003001 131 KPLLLVPTNLKVDKDSL-ILV-S-SKGCLHAVSSID----GEILWTRDFAAESVEVQQVIQLD-ESDQIYVVGYAGSSQF 202 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~-VvV-~-~~g~l~ald~~t----G~~~W~~~~~~~~~~~~~~v~~~-~~~~vyvv~~~g~~~~ 202 (859)
..... ..++. +++ . .||.+...|..+ +..+-....... ...+.... .+..++..+.+|
T Consensus 208 ~~~~~-------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~~l~~~~~d~---- 273 (383)
T 3ei3_B 208 THAEF-------NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKP---VNAAYFNPTDSTKLLTTDQRN---- 273 (383)
T ss_dssp EEEEE-------CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSC---EEEEEECTTTSCEEEEEESSS----
T ss_pred EEEEE-------CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCc---eEEEEEcCCCCCEEEEEcCCC----
Confidence 11111 21333 444 3 489999999998 666655533221 22232223 334444433333
Q ss_pred EEEEEEcCCCceeeeee
Q 003001 203 HAYQINAMNGELLNHET 219 (859)
Q Consensus 203 ~v~ald~~tG~~~w~~~ 219 (859)
.+..+|+.+|+......
T Consensus 274 ~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQII 290 (383)
T ss_dssp EEEEEETTBTTSCSEEE
T ss_pred cEEEEECCCCccccccc
Confidence 58888999998775553
No 160
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.25 E-value=1.6 Score=46.16 Aligned_cols=184 Identities=7% Similarity=-0.029 Sum_probs=94.9
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCc---ceeeeeeeec-CEEEEEEcC------------------CCeEEE
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIALG-KYVITLSSD------------------GSTLRA 110 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~---~i~~l~~~~~-~~~V~Vs~~------------------g~~v~A 110 (859)
++++|+++..+.|..+|+++|++..-....... ....+ .... ++.++++.. .+.|+.
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i-~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAV-TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEE-EECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceE-EEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 678999987777999999887642211110100 01123 1233 455666532 257999
Q ss_pred EeCCCCcEeEEE-eccCccccCCcccccccccccCCC-eEEEE--eCCEEEEEEcCC---CcEEEEEeccCcceeeeeEE
Q 003001 111 WNLPDGQMVWES-FLRGSKHSKPLLLVPTNLKVDKDS-LILVS--SKGCLHAVSSID---GEILWTRDFAAESVEVQQVI 183 (859)
Q Consensus 111 ld~~tG~llW~~-~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~--~~g~l~ald~~t---G~~~W~~~~~~~~~~~~~~v 183 (859)
+|+.+|+..-.. .+..+ .. ...+.++ .++|. .+++|++++..+ |...--...+. |..+.
T Consensus 170 ~d~~~~~~~~~~~~~~~p---~g-------ia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~ 235 (322)
T 2fp8_A 170 YDPSTKETTLLLKELHVP---GG-------AEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN----PGNIK 235 (322)
T ss_dssp EETTTTEEEEEEEEESCC---CE-------EEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS----EEEEE
T ss_pred EeCCCCEEEEeccCCccC---cc-------eEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC----CCCeE
Confidence 999888753221 11111 11 1223344 46775 368999999875 33221112221 44443
Q ss_pred EeecCCeEEEEEecC-------CceeEEEEEEcCCCceeeeeeeecccC--ccC-ceEEecCcEEEEEECCCCeEEEEEe
Q 003001 184 QLDESDQIYVVGYAG-------SSQFHAYQINAMNGELLNHETAAFSGG--FVG-DVALVSSDTLVTLDTTRSILVTVSF 253 (859)
Q Consensus 184 ~~~~~~~vyvv~~~g-------~~~~~v~ald~~tG~~~w~~~v~~~~~--~s~-~~~~v~~~~lv~~d~~~~~l~v~~L 253 (859)
...++.+|+..... +....+..+|+ +|+.+-... .+.+ +.. ..+...++.++..+..++.+.++++
T Consensus 236 -~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~--~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 236 -RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP--LPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp -ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE--CCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC
T ss_pred -ECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEE--CCCCCccccceEEEEeCCEEEEeecCCCceEEEec
Confidence 24567788876541 11346888997 588775543 2322 222 1222244555555555556666665
Q ss_pred ec
Q 003001 254 KN 255 (859)
Q Consensus 254 ~s 255 (859)
..
T Consensus 312 ~~ 313 (322)
T 2fp8_A 312 DK 313 (322)
T ss_dssp --
T ss_pred cc
Confidence 43
No 161
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=95.22 E-value=1.1 Score=48.84 Aligned_cols=68 Identities=9% Similarity=0.191 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCEEEEEECCCCcc-------ceE--EEcCCC-------------cceeeeeeeecC--EEEEEEcCCCe
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEI-------FWR--HVLGIN-------------DVVDGIDIALGK--YVITLSSDGST 107 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~i-------lWR--~~l~~~-------------~~i~~l~~~~~~--~~V~Vs~~g~~ 107 (859)
+++.+.+++.+|.|.-.|..+|+. .|+ ..+... ..+..+.....+ ..++.++.++.
T Consensus 39 ~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~ 118 (447)
T 3dw8_B 39 SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT 118 (447)
T ss_dssp SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSC
T ss_pred CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCe
Confidence 567899999999999999998873 121 112111 123333212222 34554666779
Q ss_pred EEEEeCCCCcEe
Q 003001 108 LRAWNLPDGQMV 119 (859)
Q Consensus 108 v~Ald~~tG~ll 119 (859)
|+.||..++...
T Consensus 119 i~iw~~~~~~~~ 130 (447)
T 3dw8_B 119 IKLWKISERDKR 130 (447)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEecccccCC
Confidence 999999887654
No 162
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.08 E-value=3.2 Score=43.11 Aligned_cols=191 Identities=14% Similarity=0.142 Sum_probs=103.7
Q ss_pred CCEEEEEeC-------CCEEEEEECCCCccceEEEcCCCccee-eeeeeecCEEEEEEcCC-----CeEEEEeCCCCc-E
Q 003001 53 RKRVVVSTE-------ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQ-M 118 (859)
Q Consensus 53 ~~~Vyvat~-------~g~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG~-l 118 (859)
++.||+... .+.+.++|+.++ .|+..-+.+..-. ......++.+++++|.. ..+..+|..+++ .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ--EWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC--eEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455666554 357899999987 4987543221111 11123567777776632 369999999886 5
Q ss_pred eEEEeccCccccCCcccccccccccCCCeEEEEe-------CCEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCCe
Q 003001 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQ 190 (859)
Q Consensus 119 lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~~ 190 (859)
.|+.-...+.- ..... ....++.+++++ -..+..+|..+++ |+.-.+.+.- ....+ ...++.
T Consensus 92 ~W~~~~~~p~~-----r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~--~~~~~~ 161 (301)
T 2vpj_A 92 VWYSVAPMNVR-----RGLAG-ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGAGL--VVASGV 161 (301)
T ss_dssp CCEEECCCSSC-----CBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSCEE--EEETTE
T ss_pred eeEECCCCCCC-----cccee-EEEECCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccceE--EEECCE
Confidence 58765332211 11101 112256777763 2468889988764 7654322111 01112 235788
Q ss_pred EEEEEecCC--ceeEEEEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEEECC----CCeEEEEEeecCe
Q 003001 191 IYVVGYAGS--SQFHAYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTT----RSILVTVSFKNRK 257 (859)
Q Consensus 191 vyvv~~~g~--~~~~v~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~d~~----~~~l~v~~L~sg~ 257 (859)
+|++|-..+ ..-.+..+|+.++ .|+..-..|...... +...++.+++..-.. ...+.+.++.+++
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 998764321 1224788999886 677654444444442 333344444432111 2357777777765
No 163
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.05 E-value=6.8 Score=45.37 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=63.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEc------CCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVL------GINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l------~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
++..+..++.+|.|.-.|.++|+.+-...- .....+..+....++..++.++.++.++.||..+|+.+-+....
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 466788899999999999999986533211 11122333322223334443555679999999999988776654
Q ss_pred CccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEE
Q 003001 126 GSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEIL 167 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~ 167 (859)
.... .. ... ...+ ...++.. .+|.+...|..+|+..
T Consensus 281 ~~~~-~~--~~~--~~~~-~~~l~s~s~d~~i~~~~~~~~~~~ 317 (611)
T 1nr0_A 281 TRIE-DQ--QLG--IIWT-KQALVSISANGFINFVNPELGSID 317 (611)
T ss_dssp SSGG-GC--EEE--EEEC-SSCEEEEETTCCEEEEETTTTEEE
T ss_pred CCcc-ce--eEE--EEEc-CCEEEEEeCCCcEEEEeCCCCCcc
Confidence 3221 00 000 0111 2233333 4777777777777643
No 164
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.04 E-value=3.6 Score=42.37 Aligned_cols=187 Identities=10% Similarity=0.082 Sum_probs=93.4
Q ss_pred CEEEEEeCCCEEEEEECCCCccceE-EEcCCCc---ceeeeeeeecCEEEEEEcC-C---------------CeEEEEeC
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWR-HVLGIND---VVDGIDIALGKYVITLSSD-G---------------STLRAWNL 113 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR-~~l~~~~---~i~~l~~~~~~~~V~Vs~~-g---------------~~v~Ald~ 113 (859)
+++|+++..+.|..+|++ |+...- ....... .+..+ ....++.+++++. + +.|+.+|.
T Consensus 83 g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i-~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 83 NQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDC-AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp SEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEE-EECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred CcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCE-EECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence 789999987789999998 876422 1111110 12233 1223334444432 2 47999998
Q ss_pred CCCcEeEEEeccCccccCCcccccccccccCCC-eEEEE--eCCEEEEEEcC-CCcE----EEEEeccCcc-eeeeeEEE
Q 003001 114 PDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVS--SKGCLHAVSSI-DGEI----LWTRDFAAES-VEVQQVIQ 184 (859)
Q Consensus 114 ~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~--~~g~l~ald~~-tG~~----~W~~~~~~~~-~~~~~~v~ 184 (859)
. |+........... ....+. ...+.++ .+++. .++.|+.+|.+ +|+. .+.. .+... ..+..+.
T Consensus 161 ~-g~~~~~~~~~~~~--~~i~~~---~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~i~- 232 (314)
T 1pjx_A 161 D-GQMIQVDTAFQFP--NGIAVR---HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH-IPGTHEGGADGMD- 232 (314)
T ss_dssp T-SCEEEEEEEESSE--EEEEEE---ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE-CCCCSSCEEEEEE-
T ss_pred C-CCEEEeccCCCCc--ceEEEe---cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE-CCCCCCCCCCceE-
Confidence 6 8765432211110 011111 0001345 46665 36889999876 6753 2221 12111 1133332
Q ss_pred eecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeec
Q 003001 185 LDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 185 ~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~s 255 (859)
...++.+|+....++ .+..+|+.+|+.+.... .+......+.+- .++.+++.+..++.+..+++..
T Consensus 233 ~d~~G~l~v~~~~~~---~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWGSS---HIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTT---EEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcCCC---EEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 235678888665433 48889999898765543 221111112221 2233444554445666666543
No 165
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.99 E-value=0.89 Score=47.15 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=76.5
Q ss_pred CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCC-CCcE-eEEEeccCccccCCccccccc
Q 003001 62 ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQM-VWESFLRGSKHSKPLLLVPTN 139 (859)
Q Consensus 62 ~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~-tG~l-lW~~~~~~~~ls~~~~~~~~~ 139 (859)
.+.|+.+|+. |+.. ..........++....++..++....++.|+.||.. +|++ .=...+.. .. ..+.+
T Consensus 152 ~~~l~~~~~~-g~~~--~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~-----~~p~~ 222 (296)
T 3e5z_A 152 GRWVFRLAPD-GTLS--APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV-EP-----GKTDG 222 (296)
T ss_dssp SCEEEEECTT-SCEE--EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC-SS-----SCCCS
T ss_pred CcEEEEECCC-CCEE--EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC-CC-----CCCCe
Confidence 4578888876 6542 212211112233222234444434445789999986 7876 11111111 10 01111
Q ss_pred ccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEe-ecCCeEEEEEecCCceeEEEEEEcCCCceeee
Q 003001 140 LKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQL-DESDQIYVVGYAGSSQFHAYQINAMNGELLNH 217 (859)
Q Consensus 140 ~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~-~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~ 217 (859)
...+.++.+++..++.|..+|.. |+.+..+..+.. +..+... ..++.+|+.+. + .++.++++++++...
T Consensus 223 i~~d~~G~l~v~~~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~-~----~l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 223 LRVDAGGLIWASAGDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVS-T----EFWSIETNVRGLEHH 292 (296)
T ss_dssp EEEBTTSCEEEEETTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEET-T----EEEEEECSCCBCCC-
T ss_pred EEECCCCCEEEEcCCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcC-C----eEEEEEccccccccc
Confidence 23455778888779999999986 888877776543 2233322 23456887553 3 389999988876543
No 166
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.44 Score=51.55 Aligned_cols=192 Identities=10% Similarity=0.034 Sum_probs=105.7
Q ss_pred CCEEEEEeCCCEEEEEECCCCc------cceEEEc--CCCcceeeeeeeec-CEEEEEEcCCCeEEEEeCCCCcEeEEEe
Q 003001 53 RKRVVVSTEENVIASLDLRHGE------IFWRHVL--GINDVVDGIDIALG-KYVITLSSDGSTLRAWNLPDGQMVWESF 123 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~------ilWR~~l--~~~~~i~~l~~~~~-~~~V~Vs~~g~~v~Ald~~tG~llW~~~ 123 (859)
+..+++++.+|.|.-.|.++++ ...+... .....+..+..... +..++.++.++.|+.||..+|+.+.+..
T Consensus 126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 205 (416)
T 2pm9_A 126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS 205 (416)
T ss_dssp TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe
Confidence 5678889999999999999997 4443211 11122333322222 4456656667799999999999998887
Q ss_pred ccCccc--cCCcccccccccccCCC-eEEE-E-eCC---EEEEEEcCCC-cEEEEEe-ccCcceeeeeEEEee-cCCeEE
Q 003001 124 LRGSKH--SKPLLLVPTNLKVDKDS-LILV-S-SKG---CLHAVSSIDG-EILWTRD-FAAESVEVQQVIQLD-ESDQIY 192 (859)
Q Consensus 124 ~~~~~l--s~~~~~~~~~~~~~~~~-~VvV-~-~~g---~l~ald~~tG-~~~W~~~-~~~~~~~~~~~v~~~-~~~~vy 192 (859)
...... ......+ ....++ .+++ . .++ .+..+|..++ ++..... ..... +..+.... .+..++
T Consensus 206 ~~~~~~~~~~~v~~~----~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~l~ 279 (416)
T 2pm9_A 206 YTSPNSGIKQQLSVV----EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG--ILSLDWCHQDEHLLL 279 (416)
T ss_dssp CCCCSSCCCCCEEEE----EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC--EEEEEECSSCSSCEE
T ss_pred ccccccccCCceEEE----EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc--eeEEEeCCCCCCeEE
Confidence 652110 0001111 112122 3444 3 366 8999999887 4444443 11111 22232222 333444
Q ss_pred EEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cC-cEEEEEECCCCeEEEEEeecCe
Q 003001 193 VVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SS-DTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 193 vv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~-~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+.+| .+..+|+.+|+.+.+..... ..+. .+.+. .+ .++++.. ..+.+++-++.++.
T Consensus 280 s~~~dg----~v~~wd~~~~~~~~~~~~~~-~~v~-~~~~s~~~~~~l~s~~-~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 280 SSGRDN----TVLLWNPESAEQLSQFPARG-NWCF-KTKFAPEAPDLFACAS-FDNKIEVQTLQNLT 339 (416)
T ss_dssp EEESSS----EEEEECSSSCCEEEEEECSS-SCCC-CEEECTTCTTEEEECC-SSSEEEEEESCCCC
T ss_pred EEeCCC----CEEEeeCCCCccceeecCCC-CceE-EEEECCCCCCEEEEEe-cCCcEEEEEccCCC
Confidence 433334 58888999998886664211 1121 22222 22 4555554 35788888887755
No 167
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.89 E-value=1.8 Score=44.63 Aligned_cols=72 Identities=7% Similarity=0.093 Sum_probs=45.3
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccc-----eEE--EcC-CCcceeeeeeeec--CEEEEEEcCCCeEEEEeCCCCcEeEE
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIF-----WRH--VLG-INDVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQMVWE 121 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~il-----WR~--~l~-~~~~i~~l~~~~~--~~~V~Vs~~g~~v~Ald~~tG~llW~ 121 (859)
++..+++++.+|.|...|.++|+.. |+. .+. ....+..+..... +..++.++.++.|+.||..+++.+-.
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 3677999999999999999998532 222 121 1122333322222 44555456667999999999987654
Q ss_pred Ee
Q 003001 122 SF 123 (859)
Q Consensus 122 ~~ 123 (859)
..
T Consensus 150 ~~ 151 (351)
T 3f3f_A 150 WT 151 (351)
T ss_dssp CE
T ss_pred cc
Confidence 44
No 168
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.84 E-value=4.1 Score=41.77 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=66.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcC---CCcceeeeeeee--cCEEEEEEcCCCeEEEEeCCCC---------c
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLG---INDVVDGIDIAL--GKYVITLSSDGSTLRAWNLPDG---------Q 117 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~---~~~~i~~l~~~~--~~~~V~Vs~~g~~v~Ald~~tG---------~ 117 (859)
+++.+++++.+|.|.-.|..++...|+.... ....+..+.... ++..++.++.++.|+.||..+| +
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 101 (351)
T 3f3f_A 22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 101 (351)
T ss_dssp SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence 4667999999999999999998877765421 112233332222 2445555666679999999998 3
Q ss_pred EeEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEE
Q 003001 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEIL 167 (859)
Q Consensus 118 llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~ 167 (859)
.+.......... ......+ +..+..++ . .+|.+...|..+++..
T Consensus 102 ~~~~~~~~~~~v-~~~~~~~-----~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 102 KLCTLNDSKGSL-YSVKFAP-----AHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp EEEEECCCSSCE-EEEEECC-----GGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred eeeeecccCCce-eEEEEcC-----CCCCcEEEEecCCCcEEEecCCChHHh
Confidence 444444333222 1111111 10044444 3 4899999999998854
No 169
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.83 E-value=8.5 Score=45.32 Aligned_cols=106 Identities=9% Similarity=0.005 Sum_probs=59.2
Q ss_pred cCCCEEEEEeC-CC-----EEEEEECCCCccceEEEcCCCc-----------------------ceeeeeee-ecCEEEE
Q 003001 51 TGRKRVVVSTE-EN-----VIASLDLRHGEIFWRHVLGIND-----------------------VVDGIDIA-LGKYVIT 100 (859)
Q Consensus 51 ~~~~~Vyvat~-~g-----~l~ALd~~tG~ilWR~~l~~~~-----------------------~i~~l~~~-~~~~~V~ 100 (859)
.+++.+++++. +| .|...|..+|+..-........ .+..+... .++.+++
T Consensus 46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~ 125 (741)
T 2ecf_A 46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLF 125 (741)
T ss_dssp TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEE
T ss_pred cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEE
Confidence 45677888877 77 8999999999864333221110 02222112 3334444
Q ss_pred EEcCCCeEEEEeCCCC---cEeEEEeccCccccCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEE
Q 003001 101 LSSDGSTLRAWNLPDG---QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEIL 167 (859)
Q Consensus 101 Vs~~g~~v~Ald~~tG---~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~ 167 (859)
++. +.|+.||..+| ...- ........ ... ....++..++ ..++.|+.+|..+|+..
T Consensus 126 -~~~-~~i~~~d~~~~~~~~~~~-l~~~~~~~-~~~-------~~SPDG~~la~~~~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 126 -PLG-GELYLYDLKQEGKAAVRQ-LTHGEGFA-TDA-------KLSPKGGFVSFIRGRNLWVIDLASGRQM 185 (741)
T ss_dssp -EET-TEEEEEESSSCSTTSCCB-CCCSSSCE-EEE-------EECTTSSEEEEEETTEEEEEETTTTEEE
T ss_pred -EeC-CcEEEEECCCCCcceEEE-cccCCccc-ccc-------cCCCCCCEEEEEeCCcEEEEecCCCCEE
Confidence 443 68999999988 4431 11111111 011 1222454444 56889999999998765
No 170
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.89 Score=54.65 Aligned_cols=193 Identities=12% Similarity=0.062 Sum_probs=98.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeec--CEEEEEEcCCCeEEEEeCCCCc--EeEEEeccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQ--MVWESFLRG 126 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~--~~~V~Vs~~g~~v~Ald~~tG~--llW~~~~~~ 126 (859)
+++.+++++.+|.|.-.|..++...-...+... ..+..+..... +..++.++.++.|+.||..+|+ .........
T Consensus 20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~ 99 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence 466799999999999999875543333344322 23433422122 3445445556799999999997 444443332
Q ss_pred ccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcE--EEEEeccCcceeeeeEEEee-------------cCC
Q 003001 127 SKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEI--LWTRDFAAESVEVQQVIQLD-------------ESD 189 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~v~~~-------------~~~ 189 (859)
..+ ......+ +.++..++ . .+|.+...|..++.. .......... ...+.... .+.
T Consensus 100 ~~V-~~v~~sp-----~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~--v~~l~~~p~~~~~~~~~~~~~d~~ 171 (753)
T 3jro_A 100 ASV-NSVQWAP-----HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG--VNSASWAPATIEEDGEHNGTKESR 171 (753)
T ss_dssp SCE-EEEEECC-----GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC--EEEEEECCCC---------CGGGC
T ss_pred CCe-EEEEECC-----CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc--eEEEEecCcccccccccccCCCCC
Confidence 222 1111111 11143444 3 489999999888842 2222221111 11121111 133
Q ss_pred eEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccC-ceEEe--c---CcEEEEEECCCCeEEEEEeecCe
Q 003001 190 QIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALV--S---SDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 190 ~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v--~---~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.++..+.+| .+..+|..+|...+.........-.. .++.. . +..+++... .|.+++-++.++.
T Consensus 172 ~l~sgs~dg----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 172 KFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQ 240 (753)
T ss_dssp CEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-SSCEEEEEESSSS
T ss_pred EEEEEECCC----eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-CCEEEEecCCCCC
Confidence 444433344 37777887876555443222111111 11212 2 456666654 4788888888764
No 171
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.79 E-value=6.2 Score=43.58 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=99.0
Q ss_pred CCCEEEEEeCCC--EEEEEECCCCccceEE-EcCC--CcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccC
Q 003001 52 GRKRVVVSTEEN--VIASLDLRHGEIFWRH-VLGI--NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 52 ~~~~Vyvat~~g--~l~ALd~~tG~ilWR~-~l~~--~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~ 126 (859)
+++.+|+++..+ .|+.+|+.++...-+. .+.. .....++.....++.++++..++.|+.||..+|....-.....
T Consensus 181 ~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~ 260 (409)
T 3hrp_A 181 DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL 260 (409)
T ss_dssp TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC
T ss_pred CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc
Confidence 456789988765 8999998877652222 1111 1112233222224555556556789999999887544322111
Q ss_pred ccccCCcccccccccccC-CCeEEEEe--CCEEEEEEcCCCcEEEEEecc-C-c----------ceeeeeEEEeecCCeE
Q 003001 127 SKHSKPLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFA-A-E----------SVEVQQVIQLDESDQI 191 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~-~~~VvV~~--~g~l~ald~~tG~~~W~~~~~-~-~----------~~~~~~~v~~~~~~~v 191 (859)
.......|.. ....+. ++.+++.. +++|++++.. |+........ . + -..|..+. ...++.+
T Consensus 261 ~g~~~~~P~~--~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia-~d~dG~l 336 (409)
T 3hrp_A 261 SGSLGTNPGP--YLIYYFVDSNFYMSDQNLSSVYKITPD-GECEWFCGSATQKTVQDGLREEALFAQPNGMT-VDEDGNF 336 (409)
T ss_dssp CSCCCCSSCC--EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEE-ECTTCCE
T ss_pred cCCCCCCccc--cEEEeCCCCEEEEEeCCCCEEEEEecC-CCEEEEEeCCCCCCcCCCcccccEeCCCeEEE-EeCCCCE
Confidence 1000000000 112333 46777763 7889998854 5433222211 0 0 01144443 2345668
Q ss_pred EEEEe-cCCceeEEEEEEcCCCceeeeeeeecccCc-cC---ceEEecCcEEEEEECCCCeEEEEEeecCeeeEEEEee
Q 003001 192 YVVGY-AGSSQFHAYQINAMNGELLNHETAAFSGGF-VG---DVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (859)
Q Consensus 192 yvv~~-~g~~~~~v~ald~~tG~~~w~~~v~~~~~~-s~---~~~~v~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~l 265 (859)
|+... .++ ++..+|+.+|+...-.-.....+. .+ ..-+ ....=+|+|.+ |.|++.+..++. ++.+.+
T Consensus 337 yvad~~~~~---~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~-~~P~giavd~~-g~lyVad~~n~~--Ir~i~~ 408 (409)
T 3hrp_A 337 YIVDGFKGY---CLRKLDILDGYVSTVAGQVDVASQIDGTPLEATF-NYPYDICYDGE-GGYWIAEAWGKA--IRKYAV 408 (409)
T ss_dssp EEEETTTTC---EEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCB-SSEEEEEECSS-SEEEEEESTTCE--EEEEEE
T ss_pred EEEeCCCCC---EEEEEECCCCEEEEEeCCCCCCCcCCCChhceEe-CCceEEEEcCC-CCEEEEECCCCe--EEEEEe
Confidence 87654 332 588899888875422110000010 00 0000 11223466655 677777766665 444443
No 172
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=1.7 Score=53.47 Aligned_cols=188 Identities=12% Similarity=0.155 Sum_probs=107.0
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++..+.+++.+|.|.-.|..+++..-. ++....+..+....++.++. ++.++.|+.||..+|+.+-.......+.
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S-~s~D~~v~lWd~~~~~~~~~~~~~~~V~-- 102 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVV-INAKDTVYVLSLYSQKVLTTVFVPGKIT-- 102 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEE-EETTCEEEEEETTTCSEEEEEECSSCEE--
T ss_pred CCCEEEEEeCCCEEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEE-EECcCeEEEEECCCCcEEEEEcCCCCEE--
Confidence 467789999999999999988876544 33333344442223443444 4456799999999999998876443321
Q ss_pred CcccccccccccCCC-eEEEE-eCCEEEEEEcCCCcEEEEEec---------cC-cceeeeeEEEeecCCeEEEEEecCC
Q 003001 132 PLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDF---------AA-ESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~-~VvV~-~~g~l~ald~~tG~~~W~~~~---------~~-~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
.+ ....++ .+++. .+|.+...|..+|+.. .+.. .. .......+.....++..++++...+
T Consensus 103 ---~v----~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 103 ---SI----DTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp ---EE----ECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred ---EE----EECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 11 111234 44443 4999999999999864 2211 00 0001112221122234444554433
Q ss_pred ceeEEEEEEcCCCceeeeeeeecc----cC---------ccCc--eEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 200 SQFHAYQINAMNGELLNHETAAFS----GG---------FVGD--VALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~----~~---------~s~~--~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+ .+|..+|+.+.......+ .+ -.+. ++.. .+..+++... .+.+.+-++.+++
T Consensus 175 ---~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~-Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 175 ---TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE-DNSLVFWDANSGH 244 (902)
T ss_dssp ---EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET-TCCEEEEETTTCC
T ss_pred ---cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCc
Confidence 46 889999988765543211 00 0111 1111 3456777764 4789888988876
No 173
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=94.78 E-value=3.7 Score=43.14 Aligned_cols=186 Identities=15% Similarity=0.161 Sum_probs=97.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeee------cCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL------GKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~------~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
++..++.++.+|.+.-.|.+ |+.+-+. ......+..+.... +...++.++.++.++.||..+++..-+....
T Consensus 118 ~~~~l~s~s~D~~i~vwd~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 195 (319)
T 3frx_A 118 KASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195 (319)
T ss_dssp TSCEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCEEEEEeCCCeEEEEECC-CCeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence 45678888899999888875 4333222 11112222221111 1224444556779999999999887666544
Q ss_pred CccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 126 GSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
.... ..+ ....++..++. .||.+...|..+++.+.+.....+ ...+..+ .++..++.+..++
T Consensus 196 ~~~v----~~~----~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---v~~~~~s-p~~~~la~~~~~~---- 259 (319)
T 3frx_A 196 NSNI----NTL----TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFS-PNRYWLAAATATG---- 259 (319)
T ss_dssp CSCE----EEE----EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSC---EEEEEEC-SSSSEEEEEETTE----
T ss_pred CCcE----EEE----EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCc---EEEEEEc-CCCCEEEEEcCCC----
Confidence 3322 111 11224555553 499999999999999988865432 2223222 2333343343332
Q ss_pred EEEEEcCCCceeeeeeeeccc---CccCc---eEE-ecCcEEEEEECCCCeEEEEEeecC
Q 003001 204 AYQINAMNGELLNHETAAFSG---GFVGD---VAL-VSSDTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~~---~~s~~---~~~-v~~~~lv~~d~~~~~l~v~~L~sg 256 (859)
+..++..++......+..... ..... +.+ .++..+++... .+.+++-++.++
T Consensus 260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~-Dg~i~vWd~~t~ 318 (319)
T 3frx_A 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT-DNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET-TSCEEEEEEEEC
T ss_pred cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec-CceEEEEEEeec
Confidence 455566666655544321110 00111 111 13446666654 466777766553
No 174
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.74 E-value=2.3 Score=44.72 Aligned_cols=185 Identities=13% Similarity=0.082 Sum_probs=98.8
Q ss_pred EEEEEeCCCEEEEEECCCCccceEEEcCCCc--ceeeee-eeecCEEEEEEcC-----C------CeEEEEeCCCCcEeE
Q 003001 55 RVVVSTEENVIASLDLRHGEIFWRHVLGIND--VVDGID-IALGKYVITLSSD-----G------STLRAWNLPDGQMVW 120 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~--~i~~l~-~~~~~~~V~Vs~~-----g------~~v~Ald~~tG~llW 120 (859)
.+|+-.. ..+.++|+.+++ |+. .+.+. .-.+.. +..++.+++++|. + ..+..||+.+++ |
T Consensus 6 ~l~~~GG-~~~~~yd~~~~~--W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W 79 (315)
T 4asc_A 6 LIFMISE-EGAVAYDPAANE--CYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--W 79 (315)
T ss_dssp EEEEEET-TEEEEEETTTTE--EEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--E
T ss_pred EEEEEcC-CceEEECCCCCe--Eec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--E
Confidence 4554444 679999999987 986 22211 111111 2346666666662 1 138889998875 8
Q ss_pred EEeccCccccCCcccccccccccCCCeEEEEeC----------CEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCC
Q 003001 121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK----------GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESD 189 (859)
Q Consensus 121 ~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~----------g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~ 189 (859)
+.-...+. +..... ....++.++++++ ..+..+|..++ .|+.-.+.+.- ....+ ...++
T Consensus 80 ~~~~~~p~-----~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~--~~~~~ 149 (315)
T 4asc_A 80 LGMPPLPS-----PRCLFG-LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTV--LSHMD 149 (315)
T ss_dssp EECCCBSS-----CEESCE-EEEETTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEE--EEETT
T ss_pred EECCCCCc-----chhcee-EEEECCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeE--EEECC
Confidence 65422211 111111 1122567777632 35889998887 48864432211 01112 24678
Q ss_pred eEEEEEecC---CceeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEEECCC----CeEEEEEeecCe
Q 003001 190 QIYVVGYAG---SSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTTR----SILVTVSFKNRK 257 (859)
Q Consensus 190 ~vyvv~~~g---~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~~~----~~l~v~~L~sg~ 257 (859)
.+|++|-.+ ...-.+..+|+.+. .|+..-..|..... .+.+.++.++++.-... ..+.+.++.+++
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 899887541 11234788998876 58775445544444 23333555555432211 146666666665
No 175
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.62 E-value=0.74 Score=48.20 Aligned_cols=182 Identities=4% Similarity=-0.038 Sum_probs=98.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCc----cceEEEcCCCcceeeeeeeecCE-EEEEEcCCCeEEEEeC-CCCcEeEEEec-
Q 003001 52 GRKRVVVSTEENVIASLDLRHGE----IFWRHVLGINDVVDGIDIALGKY-VITLSSDGSTLRAWNL-PDGQMVWESFL- 124 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~----ilWR~~l~~~~~i~~l~~~~~~~-~V~Vs~~g~~v~Ald~-~tG~llW~~~~- 124 (859)
+++.+++++.+|.|...|..+|+ ........ ..+..+....++. .++.++.++.|+.||. .+|+.. ....
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~ 98 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTNN 98 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBSC
T ss_pred CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC--CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-ecccc
Confidence 46679999999999999998888 44443222 2243332223444 5555666679999999 888762 2221
Q ss_pred -cCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCC---------CcEEEEEeccCcceeeeeEEEeecCCeEEE
Q 003001 125 -RGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSID---------GEILWTRDFAAESVEVQQVIQLDESDQIYV 193 (859)
Q Consensus 125 -~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~t---------G~~~W~~~~~~~~~~~~~~v~~~~~~~vyv 193 (859)
.... ...+ ....++.++.. .+|.+...|..+ ++.+++...... +..+. ..++.+++
T Consensus 99 ~~~~~----v~~l----~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~--~~~~~l~~ 165 (342)
T 1yfq_A 99 EANLG----ICRI----CKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK---IFTMD--TNSSRLIV 165 (342)
T ss_dssp CCCSC----EEEE----EEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC---EEEEE--ECSSEEEE
T ss_pred CCCCc----eEEE----EeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc---eEEEE--ecCCcEEE
Confidence 1111 1111 11112344443 488999888877 666655542211 22221 24455554
Q ss_pred EEecCCceeEEEEEEcCC-Cceeeeeeee-cccCccCceEEe---cCcEEEEEECCCCeEEEEEeecC
Q 003001 194 VGYAGSSQFHAYQINAMN-GELLNHETAA-FSGGFVGDVALV---SSDTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 194 v~~~g~~~~~v~ald~~t-G~~~w~~~v~-~~~~~s~~~~~v---~~~~lv~~d~~~~~l~v~~L~sg 256 (859)
.+..| .+..+|..+ +......... ....+ .++.. .+..+++... .|.+.+.++..+
T Consensus 166 ~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~i--~~i~~~~~~~~~l~~~~~-dg~i~i~~~~~~ 226 (342)
T 1yfq_A 166 GMNNS----QVQWFRLPLCEDDNGTIEESGLKYQI--RDVALLPKEQEGYACSSI-DGRVAVEFFDDQ 226 (342)
T ss_dssp EESTT----EEEEEESSCCTTCCCEEEECSCSSCE--EEEEECSGGGCEEEEEET-TSEEEEEECCTT
T ss_pred EeCCC----eEEEEECCccccccceeeecCCCCce--eEEEECCCCCCEEEEEec-CCcEEEEEEcCC
Confidence 44443 488889888 7654332211 11111 12222 2345555553 577777666654
No 176
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.60 E-value=1.3 Score=47.96 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=69.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.++.++.+|.|.-.|.+.+...-+........+..+....++..++.++.++.++.||..+|+.+-.+.........
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 35678888999999999988554333332222223433322223334444666779999999999988776543321100
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEe
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~ 171 (859)
..+.+. ......++..++ . .+|.++..|..+|+......
T Consensus 297 ~~~~v~-~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 337 (380)
T 3iz6_a 297 ELPIVT-SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG 337 (380)
T ss_dssp SSCSCS-EEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred ccCceE-EEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe
Confidence 000110 001222444444 3 48999999999998877663
No 177
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.57 E-value=5.4 Score=41.90 Aligned_cols=195 Identities=8% Similarity=0.042 Sum_probs=104.1
Q ss_pred cCCCEEEEEeCC-----C-------EEEEEECCCCccceEEEcCCCccee-eeeeeecCEEEEEEcCC-------CeEEE
Q 003001 51 TGRKRVVVSTEE-----N-------VIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-------STLRA 110 (859)
Q Consensus 51 ~~~~~Vyvat~~-----g-------~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g-------~~v~A 110 (859)
..++.||+.... + .+..+|+.++ .|+..-+.+..-. ......++.+++++|.. ..+..
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS--EWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTT--EEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCC--cEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEE
Confidence 346778876551 1 2889999887 5987533221111 11123567777777632 35888
Q ss_pred EeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeC--------CEEEEEEcCCCcEEEEEeccCcce-eeee
Q 003001 111 WNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESV-EVQQ 181 (859)
Q Consensus 111 ld~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~--------g~l~ald~~tG~~~W~~~~~~~~~-~~~~ 181 (859)
+|..++ .|+.-...+. +..... .+..++.++++++ ..+..+|..++ .|+.-.+.+.- ....
T Consensus 132 yd~~~~--~W~~~~~~p~-----~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~ 201 (318)
T 2woz_A 132 YDPVAA--KWSEVKNLPI-----KVYGHN-VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFG 201 (318)
T ss_dssp EETTTT--EEEEECCCSS-----CEESCE-EEEETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCE
T ss_pred EeCCCC--CEeECCCCCC-----cccccE-EEEECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccce
Confidence 998776 4876532221 111111 1122577777531 34899998876 48765432211 0111
Q ss_pred EEEeecCCeEEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEEEC-------------CC
Q 003001 182 VIQLDESDQIYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDT-------------TR 245 (859)
Q Consensus 182 ~v~~~~~~~vyvv~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~-------------~~ 245 (859)
+ ...++.+|++|-.... .-.+..+|+.+++ |+..-..|..... .+.+.++.+++..-. ..
T Consensus 202 ~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 277 (318)
T 2woz_A 202 V--AIHKGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV 277 (318)
T ss_dssp E--EEETTEEEEEEEEETTEEEEEEEEEETTTCC--EEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBC
T ss_pred E--EEECCEEEEEcCcCCCCccceEEEEECCCCe--EEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceecccee
Confidence 2 2357889988743221 2357789998874 8875444544333 233334444443211 12
Q ss_pred CeEEEEEeecCeeeEEEE
Q 003001 246 SILVTVSFKNRKIAFQET 263 (859)
Q Consensus 246 ~~l~v~~L~sg~~~~~~~ 263 (859)
..+++.++.+++ ...+
T Consensus 278 ~~v~~yd~~~~~--W~~~ 293 (318)
T 2woz_A 278 NDIWKYEDDKKE--WAGM 293 (318)
T ss_dssp CCEEEEETTTTE--EEEE
T ss_pred eeEEEEeCCCCE--ehhh
Confidence 346667776665 4444
No 178
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.36 E-value=2 Score=50.64 Aligned_cols=189 Identities=14% Similarity=0.108 Sum_probs=100.7
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEE---EcCC-CcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRH---VLGI-NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~---~l~~-~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.+.+++++.+|.|.-.|..+++..+.. .+.. ...+..+....++..++.++.++.|+.||..+|+...+.......
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~ 474 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD 474 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC
Confidence 456888999999999998887655422 2222 122333322223444544566779999999999998887655443
Q ss_pred ccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccC-c-ceeeeeEEEeecC--CeEEEEEecCCcee
Q 003001 129 HSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAA-E-SVEVQQVIQLDES--DQIYVVGYAGSSQF 202 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~-~-~~~~~~~v~~~~~--~~vyvv~~~g~~~~ 202 (859)
+ ....+ ..++..++ . .|+.+...|.. +...+...... + ......+.....+ ..++..+.+|
T Consensus 475 v-~~~~~-------s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~---- 541 (694)
T 3dm0_A 475 V-LSVAF-------SLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK---- 541 (694)
T ss_dssp E-EEEEE-------CTTSSCEEEEETTSCEEEECTT-SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTS----
T ss_pred E-EEEEE-------eCCCCEEEEEeCCCEEEEEECC-CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCC----
Confidence 2 11111 11343333 3 48888888854 34444443221 1 1111112111122 2344333344
Q ss_pred EEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 203 HAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 203 ~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+..+|+.+++........ ...+. .+.+- .+..+++... .+.+++-++.+++
T Consensus 542 ~v~vwd~~~~~~~~~~~~h-~~~v~-~v~~spdg~~l~sg~~-Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 542 TVKVWNLSNCKLRSTLAGH-TGYVS-TVAVSPDGSLCASGGK-DGVVLLWDLAEGK 594 (694)
T ss_dssp CEEEEETTTCCEEEEECCC-SSCEE-EEEECTTSSEEEEEET-TSBCEEEETTTTE
T ss_pred eEEEEECCCCcEEEEEcCC-CCCEE-EEEEeCCCCEEEEEeC-CCeEEEEECCCCc
Confidence 3777899888776544211 01111 11111 3446666654 4788888888876
No 179
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.31 E-value=1.1 Score=48.12 Aligned_cols=152 Identities=12% Similarity=-0.037 Sum_probs=77.9
Q ss_pred cCCCEEEEEeC-CC--EEEEEECCCCccceEEEcCCCc-ceeeeee-eecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 51 TGRKRVVVSTE-EN--VIASLDLRHGEIFWRHVLGIND-VVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 51 ~~~~~Vyvat~-~g--~l~ALd~~tG~ilWR~~l~~~~-~i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
++++.|+.++. +| .|..+|+++|+..- .+.... ....... +.+..+++.+ .++.++.||..+|+..--....
T Consensus 45 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~spdg~~l~~~~-~~~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 45 RDGSKLLFGGAFDGPWNYYLLDLNTQVATQ--LTEGRGDNTFGGFLSPDDDALFYVK-DGRNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTCEEEE--CCCSSCBCSSSCEECTTSSEEEEEE-TTTEEEEEETTTCCEEEEEECC
T ss_pred CCCCEEEEEEcCCCCceEEEEeCCCCceEE--eeeCCCCCccceEEcCCCCEEEEEe-CCCeEEEEECCCCcceeeeech
Confidence 45666666665 56 59999999998643 232221 1111111 2344455544 4568999999999877555543
Q ss_pred CccccCCcccccccccccCCCeEEE-E-----------------------eCCEEEEEEcCCCcEEEEEeccCcceeeee
Q 003001 126 GSKHSKPLLLVPTNLKVDKDSLILV-S-----------------------SKGCLHAVSSIDGEILWTRDFAAESVEVQQ 181 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~~~~~VvV-~-----------------------~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 181 (859)
.... ..... ....++..++ . .++.|+.+|..+|+..--...... ...
T Consensus 122 ~~~~-~~~~~-----~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~---~~~ 192 (388)
T 3pe7_A 122 AEWV-GYGTW-----VANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW---LGH 192 (388)
T ss_dssp TTEE-EEEEE-----EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC---EEE
T ss_pred hhcc-cccce-----eECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc---ccc
Confidence 3211 00000 0111333333 1 136899999999986544332211 112
Q ss_pred EEEee-cCCeEEEEEecCC--ceeEEEEEEcCCCce
Q 003001 182 VIQLD-ESDQIYVVGYAGS--SQFHAYQINAMNGEL 214 (859)
Q Consensus 182 ~v~~~-~~~~vyvv~~~g~--~~~~v~ald~~tG~~ 214 (859)
+..+. .+..++++...+. ....+..+|+.+++.
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 22233 3334443333221 123577788776654
No 180
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.28 E-value=5.5 Score=41.39 Aligned_cols=189 Identities=13% Similarity=0.094 Sum_probs=100.8
Q ss_pred CCEEEEEeC-----CCEEEEEECCCCccceEEEcCCCccee-eeeeeecCEEEEEEcCC-----CeEEEEeCCCCcEeEE
Q 003001 53 RKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQMVWE 121 (859)
Q Consensus 53 ~~~Vyvat~-----~g~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG~llW~ 121 (859)
++.||+... .+.+.++|+.+++ |+..-+.+..-. ...+..++.+++++|.+ ..+..||+.+++ |+
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~ 90 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEER--WHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WT 90 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE--EE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCc--EeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc--ee
Confidence 455666554 2568999999884 998643331111 11123567777776632 358999998775 87
Q ss_pred EeccCccccCCcccccccccccCCCeEEEEe--C-----CEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCCeEEE
Q 003001 122 SFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K-----GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYV 193 (859)
Q Consensus 122 ~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~-----g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~~vyv 193 (859)
.-...+.- ..... ....++.+++++ + ..+..+|..++ .|+.-.+.+.- ....+ ...++.+|+
T Consensus 91 ~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~--~~~~~~iyv 160 (302)
T 2xn4_A 91 SVANMRDR-----RSTLG-AAVLNGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGV--GVVGGLLYA 160 (302)
T ss_dssp EECCCSSC-----CBSCE-EEEETTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEE--EEETTEEEE
T ss_pred eCCCCCcc-----ccceE-EEEECCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceE--EEECCEEEE
Confidence 65332211 11111 112256777753 2 36788888776 47764332211 01112 235788998
Q ss_pred EEecCCc----eeEEEEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEEECC----CCeEEEEEeecCe
Q 003001 194 VGYAGSS----QFHAYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTT----RSILVTVSFKNRK 257 (859)
Q Consensus 194 v~~~g~~----~~~v~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~d~~----~~~l~v~~L~sg~ 257 (859)
+|-..+. .-.+..+|+.++ .|+..-..|...... +.+.++.+++..-.+ ...+.+.++.+++
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 7643111 124788998876 477654445444442 333344444432111 2357777777765
No 181
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.25 E-value=5.5 Score=41.46 Aligned_cols=189 Identities=9% Similarity=0.054 Sum_probs=102.6
Q ss_pred CCEEEEEeC---CCEEEEEECCCCccceEEEcCCCccee-eeeeeecCEEEEEEcCC----CeEEEEeCCCCcEeEEEec
Q 003001 53 RKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG----STLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 53 ~~~Vyvat~---~g~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g----~~v~Ald~~tG~llW~~~~ 124 (859)
.+.||+... .+.+.++|+.+++ |+..-+.+..-. ...+..++.+++++|.+ ..+..+|+.++ .|+.-.
T Consensus 11 ~~~l~~~GG~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~~~ 86 (306)
T 3ii7_A 11 HDYRIALFGGSQPQSCRYFNPKDYS--WTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKD--SWYSKL 86 (306)
T ss_dssp CCEEEEEECCSSTTSEEEEETTTTE--EEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTT--EEEEEE
T ss_pred cceEEEEeCCCCCceEEEecCCCCC--EecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCC--eEEECC
Confidence 456666544 4689999999885 987543331111 11123577777777643 57999999887 587543
Q ss_pred cCccccCCcccccccccccCCCeEEEEeC--------CEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCCeEEEEE
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVG 195 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~~~--------g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~~vyvv~ 195 (859)
..+.- ..... ....++.++++++ ..+..+|..+++ |+.-.+.+.- ....+ ...++.+|++|
T Consensus 87 ~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~--~~~~~~iyv~G 156 (306)
T 3ii7_A 87 GPPTP-----RDSLA-ACAAEGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGM--VEANGLIYVCG 156 (306)
T ss_dssp CCSSC-----CBSCE-EEEETTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEE--EEETTEEEEEC
T ss_pred CCCcc-----cccee-EEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEE--EEECCEEEEEC
Confidence 22211 11111 1122567777632 358889988764 8765332211 01112 23578899876
Q ss_pred ecCCc------eeEEEEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEE--ECC--CCeEEEEEeecCe
Q 003001 196 YAGSS------QFHAYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTL--DTT--RSILVTVSFKNRK 257 (859)
Q Consensus 196 ~~g~~------~~~v~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~--d~~--~~~l~v~~L~sg~ 257 (859)
-..+. .-.+..+|+.++ .|+..-..|...... +.+.++.+++.. +.. ...+.+.++.+++
T Consensus 157 G~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 157 GSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp CEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 43111 234788999887 587754445444442 333343444332 110 1346777777665
No 182
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.24 E-value=8.2 Score=42.60 Aligned_cols=148 Identities=11% Similarity=0.061 Sum_probs=78.9
Q ss_pred CCCEEEEEeCC-CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcC-CC-eEEEEeCCCCcEeEEE-eccCc
Q 003001 52 GRKRVVVSTEE-NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-GS-TLRAWNLPDGQMVWES-FLRGS 127 (859)
Q Consensus 52 ~~~~Vyvat~~-g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~-g~-~v~Ald~~tG~llW~~-~~~~~ 127 (859)
.++.||+++.. +.|..+|+++|++.--...... .. +.....++.++++.. ++ .++.||..++...-.. .....
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~--~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~ 216 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG--GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST 216 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEETCCB--CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT
T ss_pred CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC--Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch
Confidence 36779988764 7899999988876533222111 11 211223345555543 33 8999999877653222 11110
Q ss_pred cccCCcccccccccccC-CCeEEEE-eCCEEEEEEcCCCcEEEEEecc---Ccceeee-eEEEeecCCeEEEEEecCCce
Q 003001 128 KHSKPLLLVPTNLKVDK-DSLILVS-SKGCLHAVSSIDGEILWTRDFA---AESVEVQ-QVIQLDESDQIYVVGYAGSSQ 201 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~-~~~VvV~-~~g~l~ald~~tG~~~W~~~~~---~~~~~~~-~~v~~~~~~~vyvv~~~g~~~ 201 (859)
.. .. +.+...+. ++.+++. .+++++++|..+|......... .....|. .+.....++.+|+.....+
T Consensus 217 ~~-~~----p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~-- 289 (409)
T 3hrp_A 217 FS-GK----IGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS-- 289 (409)
T ss_dssp SC-SC----CCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT--
T ss_pred hc-CC----cEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC--
Confidence 11 00 01112333 5777775 3789999999988755432211 1111222 3432233688887654333
Q ss_pred eEEEEEEcC
Q 003001 202 FHAYQINAM 210 (859)
Q Consensus 202 ~~v~ald~~ 210 (859)
++..+|..
T Consensus 290 -~I~~~~~~ 297 (409)
T 3hrp_A 290 -SVYKITPD 297 (409)
T ss_dssp -EEEEECTT
T ss_pred -EEEEEecC
Confidence 57777754
No 183
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.24 E-value=2.4 Score=50.04 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=103.6
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
.++..+++++.+|.|.-.|..+|+...+..-.. ..+..+....++..++.++.++.|+.||.. +...+..........
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT-KDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHR 517 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECSSTTSCS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC-CCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceeeccCCCCCC
Confidence 356778899999999999999998876654322 223333222233334435556799999975 444554432221110
Q ss_pred CCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
.....+.. ..+.....++ . .||.+...|..+++..-+........ ..+..+..+..+...+.+| .+..+|
T Consensus 518 ~~v~~~~~--~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v--~~v~~spdg~~l~sg~~Dg----~i~iwd 589 (694)
T 3dm0_A 518 DWVSCVRF--SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV--STVAVSPDGSLCASGGKDG----VVLLWD 589 (694)
T ss_dssp SCEEEEEE--CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECTTSSEEEEEETTS----BCEEEE
T ss_pred CcEEEEEE--eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE--EEEEEeCCCCEEEEEeCCC----eEEEEE
Confidence 01111110 0111122344 3 48999999999998877665433222 2222122333344333334 477789
Q ss_pred cCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003001 209 AMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+|+.+..... ...+.. +.+- .+..+++.. .+.+++-++.+++
T Consensus 590 ~~~~~~~~~~~~--~~~v~~-~~~sp~~~~l~~~~--~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 590 LAEGKKLYSLEA--NSVIHA-LCFSPNRYWLCAAT--EHGIKIWDLESKS 634 (694)
T ss_dssp TTTTEEEECCBC--SSCEEE-EEECSSSSEEEEEE--TTEEEEEETTTTE
T ss_pred CCCCceEEEecC--CCcEEE-EEEcCCCcEEEEEc--CCCEEEEECCCCC
Confidence 999998766532 111211 1111 233444443 3458888888876
No 184
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.13 E-value=5 Score=42.03 Aligned_cols=196 Identities=11% Similarity=0.036 Sum_probs=103.6
Q ss_pred eeeeccCCCEEEEEeC-----CCEEEEEECCCCccceEEEcCCCcceee-eeeeecCEEEEEEcC----C-----CeEEE
Q 003001 46 FHTQKTGRKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVDG-IDIALGKYVITLSSD----G-----STLRA 110 (859)
Q Consensus 46 f~~~~~~~~~Vyvat~-----~g~l~ALd~~tG~ilWR~~l~~~~~i~~-l~~~~~~~~V~Vs~~----g-----~~v~A 110 (859)
.+.+...++.||+... .+.+.++|+.+++ |+..-+.+..-.. .....++.+++++|. . ..+..
T Consensus 17 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 94 (308)
T 1zgk_A 17 GSHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGT--WLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 94 (308)
T ss_dssp ----CCCCCCEEEECCBSSSBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEE
T ss_pred CccccCCCCEEEEEeCcCCCCcceEEEEcCCCCe--EeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEE
Confidence 3444445677777655 3579999999885 9876332211111 112356677777664 1 35899
Q ss_pred EeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeC-------CEEEEEEcCCCcEEEEEeccCcce-eeeeE
Q 003001 111 WNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------GCLHAVSSIDGEILWTRDFAAESV-EVQQV 182 (859)
Q Consensus 111 ld~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~-------g~l~ald~~tG~~~W~~~~~~~~~-~~~~~ 182 (859)
+|+.+++ |+.-...+.- ..... ....++.++++++ ..+..+|..++ .|+.-.+.+.- ....+
T Consensus 95 ~d~~~~~--W~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~ 164 (308)
T 1zgk_A 95 YNPMTNQ--WSPCAPMSVP-----RNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIGVGV 164 (308)
T ss_dssp EETTTTE--EEECCCCSSC-----CBTCE-EEEETTEEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBSCEE
T ss_pred ECCCCCe--EeECCCCCcC-----ccccE-EEEECCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccceEE
Confidence 9998874 8764322211 11111 1122567777532 45888888776 57764332211 01111
Q ss_pred EEeecCCeEEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEEECC----CCeEEEEEeec
Q 003001 183 IQLDESDQIYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTT----RSILVTVSFKN 255 (859)
Q Consensus 183 v~~~~~~~vyvv~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~d~~----~~~l~v~~L~s 255 (859)
...++.+|++|-..+. .-.+..+|+.+. .|+..-..|...... +.+.++.+++..-.. ...+.+.++.+
T Consensus 165 --~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 165 --AVLNRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp --EEETTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred --EEECCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCC
Confidence 2357889987643211 124788998776 577654444433332 333344444432111 23577777777
Q ss_pred Ce
Q 003001 256 RK 257 (859)
Q Consensus 256 g~ 257 (859)
++
T Consensus 241 ~~ 242 (308)
T 1zgk_A 241 ET 242 (308)
T ss_dssp TE
T ss_pred Cc
Confidence 65
No 185
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=94.13 E-value=4.6 Score=42.71 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=59.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccc-----eEEEcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIF-----WRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~il-----WR~~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
++..++.++.++.|.-.|..+++.. -...+... ..+..+....++..++.++.++.|+.||..+|+.+.+....
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 4567888999999988887765421 11222221 22333322223334444556779999999999998877654
Q ss_pred CccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcC
Q 003001 126 GSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSI 162 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~ 162 (859)
...+ ....+ ..++..++ . .|+.+...|..
T Consensus 118 ~~~v-~~v~~-------sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 118 QSEV-YSVAF-------SPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp CSCE-EEEEE-------CSSTTEEEEEETTSCEEEEESS
T ss_pred CCcE-EEEEE-------CCCCCEEEEEcCCCEEEEEecc
Confidence 4332 11111 11343333 3 38888888876
No 186
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.10 E-value=4.3 Score=43.91 Aligned_cols=153 Identities=14% Similarity=0.225 Sum_probs=87.5
Q ss_pred CEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccc---cCCCeEEEE-e--------------CCEE
Q 003001 96 KYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKV---DKDSLILVS-S--------------KGCL 156 (859)
Q Consensus 96 ~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~---~~~~~VvV~-~--------------~g~l 156 (859)
++.+++|. ..+.|..||+.+|.. .+...............+.+..+ +.++.++|. . +..|
T Consensus 24 ~g~~~vs~l~~g~V~~~~~~~~~~-~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v 102 (334)
T 2p9w_A 24 RQVFYQSNLYKGRIEVYNPKTQSH-FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSF 102 (334)
T ss_dssp TTEEEEEETTTTEEEEECTTTCCE-EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEE
T ss_pred CCEEEEEeccCCEEEEEcCCCCeE-EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEE
Confidence 46777776 568999999976644 35533221100000111112234 345677763 3 4789
Q ss_pred EEEEcC---CCcEEEEEeccCcce--------eeeeEEE--eecCCeEEEEEecC-CceeEEEEEEcCCCcee--eeeee
Q 003001 157 HAVSSI---DGEILWTRDFAAESV--------EVQQVIQ--LDESDQIYVVGYAG-SSQFHAYQINAMNGELL--NHETA 220 (859)
Q Consensus 157 ~ald~~---tG~~~W~~~~~~~~~--------~~~~~v~--~~~~~~vyvv~~~g-~~~~~v~ald~~tG~~~--w~~~v 220 (859)
.++|.. +|+++|...+....- .+..+.+ ....+.+||.+..+ + .++-+++. |+.+ |-...
T Consensus 103 ~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~---~I~rV~pd-G~~~~~~~~~~ 178 (334)
T 2p9w_A 103 HSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP---AIARVSAD-GKTVSTFAWES 178 (334)
T ss_dssp EEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC---EEEEECTT-SCCEEEEEECC
T ss_pred EEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC---eEEEEeCC-CCEEeeeeecC
Confidence 999999 999999998752110 0111222 34788999966555 4 47777764 5422 43221
Q ss_pred ecc---cCccCceEEe-cCcEEEEEECCCCeEEEEEeec
Q 003001 221 AFS---GGFVGDVALV-SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 221 ~~~---~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~s 255 (859)
... .++.| +.+. .++.|++.+. .+.|..+++.+
T Consensus 179 ~~~~~~~G~nG-Iv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 179 GNGGQRPGYSG-ITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp CCSSSCCSCSE-EEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred CCcccccCcce-EEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 101 12333 3444 5667878877 79999999874
No 187
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=94.08 E-value=1.4 Score=48.60 Aligned_cols=66 Identities=8% Similarity=-0.117 Sum_probs=44.6
Q ss_pred ccCCCEEEEEe----------CCCEEEEEECCCCccceEEEcCCCc------ceeeeeeeecCEEEEEEcC--CCeEEE-
Q 003001 50 KTGRKRVVVST----------EENVIASLDLRHGEIFWRHVLGIND------VVDGIDIALGKYVITLSSD--GSTLRA- 110 (859)
Q Consensus 50 ~~~~~~Vyvat----------~~g~l~ALd~~tG~ilWR~~l~~~~------~i~~l~~~~~~~~V~Vs~~--g~~v~A- 110 (859)
+.+++.+||+. +.+.|..+|+.|++++.+..++... ...++....++..++|+.. +..|..
T Consensus 73 spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~ 152 (368)
T 1mda_H 73 GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152 (368)
T ss_dssp CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEE
Confidence 34678899997 3689999999999999999876210 0113322334556666542 456888
Q ss_pred -EeCCC
Q 003001 111 -WNLPD 115 (859)
Q Consensus 111 -ld~~t 115 (859)
+|+.+
T Consensus 153 ~iD~~t 158 (368)
T 1mda_H 153 VPGASD 158 (368)
T ss_dssp ETTTEE
T ss_pred EEchhh
Confidence 88877
No 188
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.08 E-value=2.1 Score=46.34 Aligned_cols=153 Identities=13% Similarity=0.164 Sum_probs=88.2
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEEEcCC-----Cc--ceeeeeee---ecCEEEEEEc-------------CCCeE
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGI-----ND--VVDGIDIA---LGKYVITLSS-------------DGSTL 108 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~-----~~--~i~~l~~~---~~~~~V~Vs~-------------~g~~v 108 (859)
++++|+++ .+|.|+++|+.+|.. ....++. +. ...|+... ..+.++++.. ..+.|
T Consensus 24 ~g~~~vs~l~~g~V~~~~~~~~~~-~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v 102 (334)
T 2p9w_A 24 RQVFYQSNLYKGRIEVYNPKTQSH-FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSF 102 (334)
T ss_dssp TTEEEEEETTTTEEEEECTTTCCE-EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEE
T ss_pred CCEEEEEeccCCEEEEEcCCCCeE-EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEE
Confidence 68899999 689999999976643 3544432 10 12355331 1334444332 13679
Q ss_pred EEEeCC---CCcEeEEEeccCcccc-----CCcccccccccccCCCeEEEE--eC-CEEEEEEcCCCc--EEEEEeccCc
Q 003001 109 RAWNLP---DGQMVWESFLRGSKHS-----KPLLLVPTNLKVDKDSLILVS--SK-GCLHAVSSIDGE--ILWTRDFAAE 175 (859)
Q Consensus 109 ~Ald~~---tG~llW~~~~~~~~ls-----~~~~~~~~~~~~~~~~~VvV~--~~-g~l~ald~~tG~--~~W~~~~~~~ 175 (859)
.++|+. +|+++|...+....-. ...........++.+|.+||. .. +.|++++++ |+ ..|-...+..
T Consensus 103 ~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~ 181 (334)
T 2p9w_A 103 HSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNG 181 (334)
T ss_dssp EEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCS
T ss_pred EEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCc
Confidence 999999 9999999998632100 000011112355667889994 47 999999955 54 3476544321
Q ss_pred c--eeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 176 S--VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 176 ~--~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
. .-+-.++....+..+++... ++ +++++|+.+
T Consensus 182 ~~~~G~nGIv~~pdg~~Liv~~~-~g---~L~~fD~~~ 215 (334)
T 2p9w_A 182 GQRPGYSGITFDPHSNKLIAFGG-PR---ALTAFDVSK 215 (334)
T ss_dssp SSCCSCSEEEEETTTTEEEEESS-SS---SEEEEECSS
T ss_pred ccccCcceEEEeCCCCEEEEEcC-CC---eEEEEcCCC
Confidence 1 11223443234445555433 43 599999873
No 189
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=94.05 E-value=5.5 Score=43.79 Aligned_cols=187 Identities=11% Similarity=0.089 Sum_probs=92.0
Q ss_pred CCEEEEEeCC------CEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcCC--CeEEEEeCCCCcEeEEEe
Q 003001 53 RKRVVVSTEE------NVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDG--STLRAWNLPDGQMVWESF 123 (859)
Q Consensus 53 ~~~Vyvat~~------g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g--~~v~Ald~~tG~llW~~~ 123 (859)
+++++.++++ +.|...|...+.+ +........+..+.. +.++.+++++.++ ..|+.||..+|+..--..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec
Confidence 4555444433 7899999875443 222222222322211 2455566665442 489999999998863322
Q ss_pred ccCccccCCcccccccccccCCCe-EEEE-e---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 124 LRGSKHSKPLLLVPTNLKVDKDSL-ILVS-S---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 124 ~~~~~ls~~~~~~~~~~~~~~~~~-VvV~-~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
...... .. ....++. +++. . +..|+.+|..+|+..- ..........+..+..+..+++.+..+
T Consensus 221 ~~~~~~--~~-------~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 221 FPRHNG--AP-------AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ---VTDGRSNNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp CSSCEE--EE-------EECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---CCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred CCCccc--CE-------EEcCCCCEEEEEEecCCCceEEEEECCCCCEEe---CcCCCCcccceEECCCCCEEEEEECCC
Confidence 222111 11 1222444 4433 2 3469999999988632 111111122232233455566555433
Q ss_pred CceeEEEEEEcCCCceeeeeeeecccCccCceEE-ecCcEEEEEECC--CCeEEEEEeecCe
Q 003001 199 SSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTT--RSILVTVSFKNRK 257 (859)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~-v~~~~lv~~d~~--~~~l~v~~L~sg~ 257 (859)
+ ..+++.+|+.+|+... +.........+.+ ..+..+++.... ...+++.++.+++
T Consensus 289 g-~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 289 G-RPQVYKVNINGGAPQR---ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp S-SCEEEEEETTSSCCEE---CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred C-CcEEEEEECCCCCEEE---EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 2 2468889999887432 1111110001112 133455554433 2367777877765
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=94.02 E-value=5.7 Score=41.48 Aligned_cols=151 Identities=10% Similarity=-0.012 Sum_probs=77.0
Q ss_pred CCEEEE-EeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCC----CeEEEEeCCCCcEeEEEeccCc
Q 003001 53 RKRVVV-STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG----STLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 53 ~~~Vyv-at~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g----~~v~Ald~~tG~llW~~~~~~~ 127 (859)
++++|+ .+..+.|..+|+++|+..--.. .....+.++....++.+++.+..+ +.|+.||..+|+..-.......
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 133 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST 133 (333)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS
T ss_pred CCCEEEEECCCCEEEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc
Confidence 556776 5678899999999997542221 222223344211233344433333 4899999988876421111111
Q ss_pred cccCCcccccccccccCCCeEEEEe--------CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCC
Q 003001 128 KHSKPLLLVPTNLKVDKDSLILVSS--------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~~~~VvV~~--------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~ 199 (859)
. .. .. ....+.++.+++.. .+.|+.+|.++|+..-...... .+..+.....+..+|+.....+
T Consensus 134 ~--~~--~~--~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~i~~~~dg~~l~v~~~~~~ 204 (333)
T 2dg1_A 134 A--YC--ID--DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS---VANGIALSTDEKVLWVTETTAN 204 (333)
T ss_dssp C--CC--EE--EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES---SEEEEEECTTSSEEEEEEGGGT
T ss_pred C--Cc--cc--ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC---cccceEECCCCCEEEEEeCCCC
Confidence 0 00 00 11234456777753 2689999988776542211110 1222321223345777553322
Q ss_pred ceeEEEEEEcCC-Cceee
Q 003001 200 SQFHAYQINAMN-GELLN 216 (859)
Q Consensus 200 ~~~~v~ald~~t-G~~~w 216 (859)
.+..+|..+ |..+.
T Consensus 205 ---~i~~~d~~~~g~~~~ 219 (333)
T 2dg1_A 205 ---RLHRIALEDDGVTIQ 219 (333)
T ss_dssp ---EEEEEEECTTSSSEE
T ss_pred ---eEEEEEecCCCcCcc
Confidence 477788763 65443
No 191
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.01 E-value=6.6 Score=40.68 Aligned_cols=192 Identities=14% Similarity=0.081 Sum_probs=103.7
Q ss_pred CCCEEEEEeC------CCEEEEEECCCCc-cceEEEcCCCccee-eeeeeecCEEEEEEcCC-----CeEEEEeCCCCcE
Q 003001 52 GRKRVVVSTE------ENVIASLDLRHGE-IFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQM 118 (859)
Q Consensus 52 ~~~~Vyvat~------~g~l~ALd~~tG~-ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG~l 118 (859)
.++.+|+... .+.+..+|+.+++ ..|+..-+.+..-. ......++.+++++|.+ ..+..+|+.+++
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~- 139 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ- 139 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE-
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe-
Confidence 3678888654 2579999999986 55998754332111 11123566676666532 368999988765
Q ss_pred eEEEeccCccccCCcccccccccccCCCeEEEEe-------CCEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCCe
Q 003001 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQ 190 (859)
Q Consensus 119 lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~~ 190 (859)
|+.-...+.- ..... ....++.+++++ -..+..+|..++ .|+.-.+.+.- ....+ ...++.
T Consensus 140 -W~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~--~~~~~~ 208 (301)
T 2vpj_A 140 -WSMLGDMQTA-----REGAG-LVVASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGV--ALLNDH 208 (301)
T ss_dssp -EEEEEECSSC-----CBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEE--EEETTE
T ss_pred -EEECCCCCCC-----cccce-EEEECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceE--EEECCE
Confidence 7764322211 11111 112256777763 246889998876 68764332211 01112 235788
Q ss_pred EEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEEECCC----CeEEEEEeecCe
Q 003001 191 IYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTTR----SILVTVSFKNRK 257 (859)
Q Consensus 191 vyvv~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~~~----~~l~v~~L~sg~ 257 (859)
+|++|-..+. .-.+..+|+.+++ |+..-..|..... .+.+.++.+++..-.+. ..+.+.++.+++
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEeCCCCCcccceEEEEeCCCCc--EEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 9988654211 2348889998874 7764444443333 23333444443321111 235566666554
No 192
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.89 E-value=3.1 Score=45.75 Aligned_cols=185 Identities=12% Similarity=-0.027 Sum_probs=97.8
Q ss_pred CEEEEEeCCCEEEEEECCC----------CccceEEEcCCCcceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcE-eEE
Q 003001 54 KRVVVSTEENVIASLDLRH----------GEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQM-VWE 121 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~t----------G~ilWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~l-lW~ 121 (859)
..+++++.+|.|...|..+ ++.+.+..-... .+..+... .+.+.++.++.++.|+.||..++.. .+.
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 220 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence 4577888899999999887 566665553222 23333212 2333555566678999999988532 121
Q ss_pred ------EeccCccccCCcccccccccccC-CCeEEE-E-eCCEEEEEEcCCC---cEEEEEeccCcceeeeeEEEeecCC
Q 003001 122 ------SFLRGSKHSKPLLLVPTNLKVDK-DSLILV-S-SKGCLHAVSSIDG---EILWTRDFAAESVEVQQVIQLDESD 189 (859)
Q Consensus 122 ------~~~~~~~ls~~~~~~~~~~~~~~-~~~VvV-~-~~g~l~ald~~tG---~~~W~~~~~~~~~~~~~~v~~~~~~ 189 (859)
........ ..+ .... ++.+++ . .+|.|..+|..++ +..+........ +..+.....+.
T Consensus 221 ~~~~~~~~~h~~~v----~~v----~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~i~~~p~~~ 290 (430)
T 2xyi_A 221 IDAKNIFTGHTAVV----EDV----AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE--VNCLSFNPYSE 290 (430)
T ss_dssp EECSEEECCCSSCE----EEE----EECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC--EEEEEECSSCT
T ss_pred eccceeecCCCCCE----eee----EEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC--eEEEEeCCCCC
Confidence 11111111 111 1111 344554 3 4899999999988 566766533222 22232223344
Q ss_pred eEEEEEecCCceeEEEEEEcCC-CceeeeeeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeec
Q 003001 190 QIYVVGYAGSSQFHAYQINAMN-GELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 190 ~vyvv~~~g~~~~~v~ald~~t-G~~~w~~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~s 255 (859)
.+++.+...+ .+..+|..+ ++++...... ...+. .+.+- +..++++.. ..+.+.+.++.+
T Consensus 291 ~~l~tg~~dg---~v~vwd~~~~~~~~~~~~~h-~~~v~-~i~~sp~~~~~l~s~~-~d~~i~iwd~~~ 353 (430)
T 2xyi_A 291 FILATGSADK---TVALWDLRNLKLKLHSFESH-KDEIF-QVQWSPHNETILASSG-TDRRLHVWDLSK 353 (430)
T ss_dssp TEEEEEETTS---EEEEEETTCTTSCSEEEECC-SSCEE-EEEECSSCTTEEEEEE-TTSCCEEEEGGG
T ss_pred CEEEEEeCCC---eEEEEeCCCCCCCeEEeecC-CCCEE-EEEECCCCCCEEEEEe-CCCcEEEEeCCC
Confidence 4565554433 588889887 4444333211 11111 11111 223455554 347788888876
No 193
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.88 E-value=3.5 Score=43.80 Aligned_cols=108 Identities=10% Similarity=0.069 Sum_probs=61.3
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC--cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~--~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++..+.+++.+|.|.-.|..+|+..-+..+... ..+..+....++..++.++.++.++.||..++.......+....
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~- 105 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE- 105 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS-
T ss_pred CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC-
Confidence 466788899999999999988875555544322 23433422223344554566679999999888654333332211
Q ss_pred cCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCc
Q 003001 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGE 165 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~ 165 (859)
.....+ ....++..++. .|+.+...|..+++
T Consensus 106 -~~v~~v----~~sp~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 106 -NEVKSV----AWAPSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp -SCEEEE----EECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred -CCceEE----EEeCCCCEEEEEECCCeEEEEECCCCC
Confidence 011111 11223444443 37888887777664
No 194
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.80 E-value=7.9 Score=40.92 Aligned_cols=197 Identities=12% Similarity=0.109 Sum_probs=88.9
Q ss_pred cCCCEEEEEeCC----CEE--EEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEE
Q 003001 51 TGRKRVVVSTEE----NVI--ASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWES 122 (859)
Q Consensus 51 ~~~~~Vyvat~~----g~l--~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~ 122 (859)
.+++.||++++. |.+ +.+|..+|+..-....... .....+. .++..++++. .++.+..|+..++..+.+.
T Consensus 59 pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~--~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~ 136 (361)
T 3scy_A 59 ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT--TNGKNIVTANYSGGSITVFPIGQDGALLPA 136 (361)
T ss_dssp TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE--ECSSEEEEEETTTTEEEEEEBCTTSCBCSC
T ss_pred CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE--ECCCEEEEEECCCCEEEEEEeCCCCcCccc
Confidence 456679999885 566 5667777865333222211 1122332 2444555543 4678999998744322111
Q ss_pred ----eccCccccCC---cccccccccccCCC-eEEEEe--CCEEEEEEcC--CC----c-EE-----EEEeccCcceeee
Q 003001 123 ----FLRGSKHSKP---LLLVPTNLKVDKDS-LILVSS--KGCLHAVSSI--DG----E-IL-----WTRDFAAESVEVQ 180 (859)
Q Consensus 123 ----~~~~~~ls~~---~~~~~~~~~~~~~~-~VvV~~--~g~l~ald~~--tG----~-~~-----W~~~~~~~~~~~~ 180 (859)
...+... .. ....+.......++ .+++.. ++.+..++.. +| + .. -......+ ..+.
T Consensus 137 ~~~~~~~g~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~ 214 (361)
T 3scy_A 137 SDVIEFKGSGP-DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG-SGPR 214 (361)
T ss_dssp SEEEECCCCCS-CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT-CCEE
T ss_pred ceeEEccCCCC-CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC-CCCe
Confidence 1111000 00 00000001122234 355543 5565555433 33 2 11 11122211 1233
Q ss_pred eEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeec-ccCccCc-eEEe--cCcEEEEEECC-CCeEEEEEee
Q 003001 181 QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVGD-VALV--SSDTLVTLDTT-RSILVTVSFK 254 (859)
Q Consensus 181 ~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~-~~~~s~~-~~~v--~~~~lv~~d~~-~~~l~v~~L~ 254 (859)
.+..+..+..+|+.+..++ .+..+|..+|+......+.. +....+. .+.. .+..+++.+.. .+.+.+.++.
T Consensus 215 ~~~~spdg~~l~v~~~~~~---~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 215 HLIFNSDGKFAYLINEIGG---TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEECTTSSEEEEEETTTC---EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCC---eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 4433334556777654333 46777777887654443322 2222221 2222 34456566655 5778887775
No 195
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=93.73 E-value=0.088 Score=56.60 Aligned_cols=106 Identities=10% Similarity=0.020 Sum_probs=48.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCc--cceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCc---EeEEEeccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGE--IFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQ---MVWESFLRG 126 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~--ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~---llW~~~~~~ 126 (859)
+++.+++++.+|.|.-.|..+|+ .+-... .....+..+....++..++.++.++.|+.||..+|+ ..-......
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~ 100 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN 100 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCS
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC
Confidence 46677788889999999988883 322211 111223333222233344445556799999999988 222222111
Q ss_pred ccccCCcccccccccccCCCe-EEEE-eCCEEEEEEcCCCcE
Q 003001 127 SKHSKPLLLVPTNLKVDKDSL-ILVS-SKGCLHAVSSIDGEI 166 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~~-VvV~-~~g~l~ald~~tG~~ 166 (859)
... ..+ ....++. ++.. .+|.+...|..+++.
T Consensus 101 ~~v----~~~----~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 101 RAA----TFV----RWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp SCE----EEE----ECCTTSSCCEEEESSSCEEECCC-----
T ss_pred Cce----EEE----EECCCCCEEEEEecCCeEEEEEECCccc
Confidence 111 111 1111333 3333 488888888888864
No 196
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=93.59 E-value=7.9 Score=40.19 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=47.8
Q ss_pred CCCEEEE-EeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEe
Q 003001 52 GRKRVVV-STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESF 123 (859)
Q Consensus 52 ~~~~Vyv-at~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~ 123 (859)
+++++|+ ..+.+.|+.||+. |+++.+..+.......++. ..+++.++|+. ..+.++.++..+...+|...
T Consensus 37 ~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa-~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~ 108 (255)
T 3qqz_A 37 QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIE-YIGDNQFVISDERDYAIYVISLTPNSEVKILK 108 (255)
T ss_dssp TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEE-ECSTTEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeE-EeCCCEEEEEECCCCcEEEEEcCCCCeeeeee
Confidence 4678997 4567899999997 9998888886543344663 34555665554 34678888876555567544
No 197
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=93.40 E-value=9.2 Score=40.39 Aligned_cols=143 Identities=12% Similarity=0.081 Sum_probs=73.4
Q ss_pred CCEEEEE-eCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVS-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyva-t~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++.+|+. ...+.|..+|+++|+.. ...++. .+..+....++.+++ +..+ .|+.||..+|+...-...... . .
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~--~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~~~~~~~~~~~-~-~ 132 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKT-VHALPF--MGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAELESD-L-P 132 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE-EEECSS--CEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECSSTT-C-T
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEECCC--cceEEEEeCCCeEEE-EECC-CEEEEECCCCcEEEEeeCCCC-C-C
Confidence 4566655 46789999999998753 122322 233332223444444 4433 599999999987533322111 0 0
Q ss_pred CcccccccccccCCCeEEEEe--------CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 132 PLLLVPTNLKVDKDSLILVSS--------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~~--------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
. ........+.++.+++.. .+.|++++ +|+..-...... .+..+..+..+..+|+.....+ .
T Consensus 133 ~--~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~---~~~~i~~s~dg~~lyv~~~~~~---~ 202 (326)
T 2ghs_A 133 G--NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS---IPNSICFSPDGTTGYFVDTKVN---R 202 (326)
T ss_dssp T--EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES---SEEEEEECTTSCEEEEEETTTC---E
T ss_pred C--CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc---ccCCeEEcCCCCEEEEEECCCC---E
Confidence 0 000011334456677743 26899998 676543221100 1222222224446777543332 5
Q ss_pred EEEEEcC--CC
Q 003001 204 AYQINAM--NG 212 (859)
Q Consensus 204 v~ald~~--tG 212 (859)
+..+|.. +|
T Consensus 203 I~~~d~~~~~G 213 (326)
T 2ghs_A 203 LMRVPLDARTG 213 (326)
T ss_dssp EEEEEBCTTTC
T ss_pred EEEEEcccccC
Confidence 7777875 77
No 198
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=93.36 E-value=2 Score=49.65 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=79.2
Q ss_pred EEEEEECCCCccceEEEcCCC-cce-----------e----eeeeeecC--EEEEEEcC--CCeEEEEeCCCC--cEeEE
Q 003001 64 VIASLDLRHGEIFWRHVLGIN-DVV-----------D----GIDIALGK--YVITLSSD--GSTLRAWNLPDG--QMVWE 121 (859)
Q Consensus 64 ~l~ALd~~tG~ilWR~~l~~~-~~i-----------~----~l~~~~~~--~~V~Vs~~--g~~v~Ald~~tG--~llW~ 121 (859)
.|..+|-.||+.+|+..+..+ ..+ + +.+-..|+ .+|+..+. -..|.|||..+| +.+|+
T Consensus 234 yL~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~ 313 (620)
T 2zuy_A 234 YLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWV 313 (620)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeE
Confidence 379999999999999988432 111 1 11001122 24443332 246999999999 47999
Q ss_pred EeccCcc---c-c--CCcccccccccccCCC--eEEEEeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEe--ecCC-e
Q 003001 122 SFLRGSK---H-S--KPLLLVPTNLKVDKDS--LILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQL--DESD-Q 190 (859)
Q Consensus 122 ~~~~~~~---l-s--~~~~~~~~~~~~~~~~--~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~--~~~~-~ 190 (859)
+....+. + . .-...++ .++.|+ .|++ ++ .++| .+|+.+|......+.. ..+.+. ...+ .
T Consensus 314 ~ds~~~~~~~~~gqg~H~~sva---DVDGDG~dEIv~--Gs--~~iD-~dG~~L~st~~gHGDa--~hv~d~dP~rpGle 383 (620)
T 2zuy_A 314 FDSNQPGHEAYAGQGNHSLSVA---DVDGDGKDEIIY--GA--MAVD-HDGTGLYSTGLGHGDA--MHVGDLDPSRKGLE 383 (620)
T ss_dssp EETTSTTCGGGTTCCCSSCEEE---CCSSSSSCEEEE--TT--EEEC-TTSSEEEECSCCCCSC--EEEECSCTTSSSCE
T ss_pred ecCCCCcccccccccCcCceEE---ecCCCCceeEEE--ee--eEEC-CCCCEEeecCCCCCce--eEEEecCCCCCCCE
Confidence 9875432 1 0 0112222 444444 3333 22 3566 8999999987743332 011110 1122 4
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 191 IYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
||.+--.+....-+...|+.||+++|+..
T Consensus 384 v~~~~E~~~~~~G~~~~DA~tG~vlw~~~ 412 (620)
T 2zuy_A 384 VFQVHEDATKPYGLSLRDAGTGEILWGVH 412 (620)
T ss_dssp EEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred EEEEecCCCCCCceEEEECCCCcEEEEec
Confidence 44432221111114557999999999985
No 199
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=93.36 E-value=8.1 Score=46.39 Aligned_cols=151 Identities=9% Similarity=0.059 Sum_probs=86.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcC---C----CcceeeeeeeecCEE-EEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG---I----NDVVDGIDIALGKYV-ITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~---~----~~~i~~l~~~~~~~~-V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
++.++++|..+-|..+|+++|+..+-..-. . ...+..+ ....++. +.+++.++.|..+|..+|+. +.+..
T Consensus 367 ~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i-~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~ 444 (795)
T 4a2l_A 367 DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV-YVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQ 444 (795)
T ss_dssp TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEE-EEETTTTEEEEEETTTEEEEEETTTCCE-EEECT
T ss_pred CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE-EEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeec
Confidence 667999999978999999988754322111 0 0112233 1233444 77777656799999998874 33432
Q ss_pred cCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEecc----CcceeeeeEEEeecCCeEEEEEecCCc
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA----AESVEVQQVIQLDESDQIYVVGYAGSS 200 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~----~~~~~~~~~v~~~~~~~vyvv~~~g~~ 200 (859)
..+.+... .+.. ...+.++.+++.+.+.|+++|..+|+........ .+......+ ....++.+++.+. ++
T Consensus 445 ~~~~l~~~-~v~~--i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~d~~g~lWigt~-~G- 518 (795)
T 4a2l_A 445 RNSQLVNE-NVYA--ILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTL-FRDSHKRLWIGGE-EG- 518 (795)
T ss_dssp TTSCCSCS-CEEE--EEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEE-EECTTCCEEEEES-SC-
T ss_pred CCCCcCCC-eeEE--EEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEE-EECCCCCEEEEeC-Cc-
Confidence 21112101 1111 1334467888876577999999988654322110 001112222 2346788998776 44
Q ss_pred eeEEEEEEcCCCce
Q 003001 201 QFHAYQINAMNGEL 214 (859)
Q Consensus 201 ~~~v~ald~~tG~~ 214 (859)
+..+|..+++.
T Consensus 519 ---l~~~~~~~~~~ 529 (795)
T 4a2l_A 519 ---LSVFKQEGLDI 529 (795)
T ss_dssp ---EEEEEEETTEE
T ss_pred ---eEEEeCCCCeE
Confidence 88899888865
No 200
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=93.34 E-value=4.6 Score=43.00 Aligned_cols=155 Identities=10% Similarity=-0.000 Sum_probs=78.2
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeee-e-ecCEEEEEE---------------------cCCCe
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI-A-LGKYVITLS---------------------SDGST 107 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~-~~~~~V~Vs---------------------~~g~~ 107 (859)
++++.|+.++.++.|+.+|..+|+..--...+.......... . .+..++.+. .....
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 457778888888899999999998765444433211001101 1 122222211 12357
Q ss_pred EEEEeCCCCcEeEEEeccCccccCCcccccccccccC-CCe-EEEEe-------CCEEEEEEcCCCcEEEEEeccCccee
Q 003001 108 LRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDK-DSL-ILVSS-------KGCLHAVSSIDGEILWTRDFAAESVE 178 (859)
Q Consensus 108 v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~-~~~-VvV~~-------~g~l~ald~~tG~~~W~~~~~~~~~~ 178 (859)
|+.||..+|+...-........ . + .... ++. ++... ...|+.+|..+++..--........
T Consensus 170 l~~~d~~~g~~~~l~~~~~~~~--~-~------~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~- 239 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQENQWLG--H-P------IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGES- 239 (388)
T ss_dssp EEEEETTTCCEEEEEEESSCEE--E-E------EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEE-
T ss_pred EEEEECCCCceEEeecCCcccc--c-c------EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcc-
Confidence 9999999998764443222110 0 1 1111 233 32222 2267777766654322111111011
Q ss_pred eeeEEEeecCCeEEEEEec-CCceeEEEEEEcCCCcee
Q 003001 179 VQQVIQLDESDQIYVVGYA-GSSQFHAYQINAMNGELL 215 (859)
Q Consensus 179 ~~~~v~~~~~~~vyvv~~~-g~~~~~v~ald~~tG~~~ 215 (859)
...+..+..+..+++++.. +.....++.+|+.+|+..
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence 1122223455556555554 333345889999999864
No 201
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=93.24 E-value=15 Score=42.41 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=77.7
Q ss_pred EEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEecc---
Q 003001 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFA--- 173 (859)
Q Consensus 99 V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~--- 173 (859)
++.++.++.++.||..+|+.+-......... ..+ ....++..++. .||.+...|..+|+..-.....
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V----~~v----~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFV----HSV----RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCE----EEE----EECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCce----EEE----EECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence 4435566789999988887766554433222 111 11224555553 4899999999999877655321
Q ss_pred --CcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCc--eEEecCcEEEEEECCCCeEE
Q 003001 174 --AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGD--VALVSSDTLVTLDTTRSILV 249 (859)
Q Consensus 174 --~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~--~~~v~~~~lv~~d~~~~~l~ 249 (859)
...-.+..+..+..+..+...+.++ .+...|+.+|+.+.+..... ..... .+...+..+++... .+.+.
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D~----~v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~-d~~i~ 307 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVATLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISA-NGFIN 307 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECCS--SGGGCEEEEEECSSCEEEEET-TCCEE
T ss_pred ccccCCCEEEEEECCCCCEEEEEeCCC----eEEEEeCCCCceeeeecCCC--CccceeEEEEEcCCEEEEEeC-CCcEE
Confidence 1111122232222333444434333 47778999998876654321 11111 11114455555554 46777
Q ss_pred EEEeecCe
Q 003001 250 TVSFKNRK 257 (859)
Q Consensus 250 v~~L~sg~ 257 (859)
..++.++.
T Consensus 308 ~~~~~~~~ 315 (611)
T 1nr0_A 308 FVNPELGS 315 (611)
T ss_dssp EEETTTTE
T ss_pred EEeCCCCC
Confidence 77766654
No 202
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=93.03 E-value=9.4 Score=41.63 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=77.9
Q ss_pred CCEEEEEeC---CCEEEEEEC-CCCccceEEEcCCCc-ceeeeeeeecCE-EEEEEcCCCeEEEEeCCCCcEeEEEeccC
Q 003001 53 RKRVVVSTE---ENVIASLDL-RHGEIFWRHVLGIND-VVDGIDIALGKY-VITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 53 ~~~Vyvat~---~g~l~ALd~-~tG~ilWR~~l~~~~-~i~~l~~~~~~~-~V~Vs~~g~~v~Ald~~tG~llW~~~~~~ 126 (859)
+++++..+. ++.|..++. .+|+.+=.+.+..+. .+-.++...|++ .++-++.+++|+-||.++|+.+.......
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 444444433 666666666 457655544443331 121222223433 33324667899999999999999886432
Q ss_pred ccccCCcccccccccccCCCeEEE------------E--eCCEEEEEEcCCCcEEEEEec--cCcceeeeeEEEeecCCe
Q 003001 127 SKHSKPLLLVPTNLKVDKDSLILV------------S--SKGCLHAVSSIDGEILWTRDF--AAESVEVQQVIQLDESDQ 190 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~~VvV------------~--~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~v~~~~~~~ 190 (859)
... .....+ ....++..++ . .|+++...|..+|+.+-.... +.+.. . ..+.....+.
T Consensus 224 ~~v-~~v~~v----afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~-~~lsg~~sg~ 296 (356)
T 2w18_A 224 SYQ-ASVCHK----AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-G-RFLEGDVKDH 296 (356)
T ss_dssp ----CCCEEE----EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-C-CEEEEEEETT
T ss_pred cce-eeeEEE----EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-c-eeEccccCCC
Confidence 111 001000 0011333332 1 267888889888887644321 11110 0 0111111122
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 191 IYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
+.+.+...+ .+...|+.+|+.+-+.+
T Consensus 297 ~lASgS~Dg---TIkIWDl~tGk~l~tL~ 322 (356)
T 2w18_A 297 CAAAILTSG---TIAIWDLLLGQCTALLP 322 (356)
T ss_dssp EEEEEETTS---CEEEEETTTCSEEEEEC
T ss_pred EEEEEcCCC---cEEEEECCCCcEEEEec
Confidence 333333222 37778999999887653
No 203
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.00 E-value=9.7 Score=39.52 Aligned_cols=190 Identities=13% Similarity=0.072 Sum_probs=105.8
Q ss_pred CCCEEEEEeC-----CCEEEEEECCCCccceEEEcCCCccee-eeeeeecCEEEEEEcCC------CeEEEEeCCCCcEe
Q 003001 52 GRKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG------STLRAWNLPDGQMV 119 (859)
Q Consensus 52 ~~~~Vyvat~-----~g~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g------~~v~Ald~~tG~ll 119 (859)
.++.||+... .+.+..+|+.++ .|+..-+.+..-. ......++.+++++|.+ ..+..||..+++
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-- 129 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKD--SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES-- 129 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTT--EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE--
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCC--eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc--
Confidence 3777888764 368999999988 5987644332111 11123567777776642 459999998875
Q ss_pred EEEeccCccccCCcccccccccccCCCeEEEEe-----------CCEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeec
Q 003001 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-----------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDE 187 (859)
Q Consensus 120 W~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-----------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~ 187 (859)
|+.-...+.- ..... .+..++.+++++ -..+.++|..++ .|+.-.+.+.- ....+ ...
T Consensus 130 W~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~--~~~ 199 (306)
T 3ii7_A 130 WHTKPSMLTQ-----RCSHG-MVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGL--VFV 199 (306)
T ss_dssp EEEECCCSSC-----CBSCE-EEEETTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEE--EEE
T ss_pred eEeCCCCcCC-----cceeE-EEEECCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceE--EEE
Confidence 8765332211 11111 112256777753 234888998887 58765432211 01112 235
Q ss_pred CCeEEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEEEC----CCCeEEEEEeecCe
Q 003001 188 SDQIYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDT----TRSILVTVSFKNRK 257 (859)
Q Consensus 188 ~~~vyvv~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~----~~~~l~v~~L~sg~ 257 (859)
++.+|++|-.... .-.+..+|+.+++ |+..-..|....+ .+.+.++.++++.-. ....+.+.++.+++
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNE--WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTE--EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCc--EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 7888887643211 1247889998874 8775444544433 233334444444321 12356777777765
No 204
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=92.69 E-value=16 Score=41.18 Aligned_cols=107 Identities=15% Similarity=0.257 Sum_probs=59.8
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++..+++++.+|.+.-.|. +|+.+....-.. ..+..+....++..++.++.++.++.||. +|+.+-......... .
T Consensus 191 ~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v-~ 266 (577)
T 2ymu_A 191 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV-N 266 (577)
T ss_dssp TSSCEEEEETTSEEEEECT-TSCEEEEEECCS-SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCE-E
T ss_pred CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC-CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCE-E
Confidence 4566888999999998884 787766554322 22333322223334444555679999995 677766554433222 1
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEE
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~ 170 (859)
...+ ..++..++ . .++.+...|. +|+.+-..
T Consensus 267 ~v~~-------~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~ 299 (577)
T 2ymu_A 267 GVAF-------RPDGQTIASASDDKTVKLWNR-NGQLLQTL 299 (577)
T ss_dssp EEEE-------CTTSSEEEEEETTSCEEEEET-TSCEEEEE
T ss_pred EEEE-------cCCCCEEEEEeCCCEEEEEeC-CCcEEEEE
Confidence 1111 11344444 3 3777777774 55554443
No 205
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=92.69 E-value=2.8 Score=50.53 Aligned_cols=152 Identities=11% Similarity=0.143 Sum_probs=85.6
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCC--CcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc--Ccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGI--NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR--GSK 128 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~--~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~--~~~ 128 (859)
++.+++++..+-|..+|+++++.. ..... ...+..+ ....++.+.+++.++.|+.||..+++...-.... ...
T Consensus 183 ~g~lwigt~~~Gl~~~~~~~~~~~--~~~~~~~~~~i~~i-~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 259 (795)
T 4a2l_A 183 GDQIYIGTSTDGLYTYSITQKTFE--KVIPILGTKQIQAI-LQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKS 259 (795)
T ss_dssp TTEEEEEESSSCEEEEETTTCCEE--ECC----CCCEEEE-EEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTS
T ss_pred CCCEEEEECCCCEEEEeCCCCeEE--EecCCCCCCeeEEE-EEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccc
Confidence 678999998655999999888643 22111 1123223 1234455666664435999999888654221111 011
Q ss_pred ccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccC--cce---eeeeEEEeecCCeEEEEEecCCceeE
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA--ESV---EVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~--~~~---~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
++.. .+.. ...+.++.+.+.+.+.|..+|..+++...-...+. ..+ ....+. ....+.+++.+..++
T Consensus 260 l~~~-~i~~--i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~-~D~~g~lWigt~~~G---- 331 (795)
T 4a2l_A 260 ISSN-YIRS--LAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF-MDSQGGMWLGTYFGG---- 331 (795)
T ss_dssp CSCS-BEEE--EEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE-ECTTSCEEEEESSSC----
T ss_pred cCCC-eEEE--EEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE-EeCCcCEEEEECCCC----
Confidence 1111 1111 13455678888765579999999887554332211 111 122222 346788998776565
Q ss_pred EEEEEcCCCcee
Q 003001 204 AYQINAMNGELL 215 (859)
Q Consensus 204 v~ald~~tG~~~ 215 (859)
+..++..++...
T Consensus 332 l~~~~~~~~~~~ 343 (795)
T 4a2l_A 332 LNYYHPIRNRFK 343 (795)
T ss_dssp EEEECGGGGSSE
T ss_pred eEEeCCCcccce
Confidence 888888777644
No 206
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=92.68 E-value=12 Score=39.81 Aligned_cols=143 Identities=12% Similarity=0.083 Sum_probs=75.4
Q ss_pred CCEEEEEeCCCEEEEEECCCC-ccceEEEcCCCcceeeeeeeecCEEEEE-EcCCCeEEEEeCCCCcE------------
Q 003001 53 RKRVVVSTEENVIASLDLRHG-EIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQM------------ 118 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG-~ilWR~~l~~~~~i~~l~~~~~~~~V~V-s~~g~~v~Ald~~tG~l------------ 118 (859)
.+.++++. ++.+...|..++ +.+.+... +..+..+ ..+.+++. ++.++.|+.||..+|+.
T Consensus 110 ~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~---s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~ 183 (355)
T 3vu4_A 110 REFIVVSY-GDVISVFKFGNPWKRITDDIR--FGGVCEF---SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA 183 (355)
T ss_dssp SSEEEEEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEE---ETTEEEEEESSCTTCEEEEECCC---------------
T ss_pred CCEEEEEE-cCEEEEEECCCCceeeEEecc--CCceEEE---EccEEEEeCCCcCcEEEEEECCCCCccccccccccccc
Confidence 44555554 567888898888 66665443 1111111 22444444 35567999999998872
Q ss_pred ----eEEEeccCccccCCcccccccccccCCCeEEEE--eCCE-EEEEEcCCCcEEEEEecc-CcceeeeeEEEeecCCe
Q 003001 119 ----VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGC-LHAVSSIDGEILWTRDFA-AESVEVQQVIQLDESDQ 190 (859)
Q Consensus 119 ----lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~-l~ald~~tG~~~W~~~~~-~~~~~~~~~v~~~~~~~ 190 (859)
+-......... ..+ ....++..++. .||. +...|..+|+.+-++... ... ....+..+..+..
T Consensus 184 ~~p~~~~~~~h~~~v----~~~----~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~ 254 (355)
T 3vu4_A 184 ILGKGVLIKAHTNPI----KMV----RLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSK 254 (355)
T ss_dssp ---CCEEECCCSSCE----EEE----EECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCE
T ss_pred cCcccEEEEccCCce----EEE----EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCE
Confidence 22222222111 111 12224555553 3887 999999999998887632 111 1222322223334
Q ss_pred EEEEEecCCceeEEEEEEcCCCce
Q 003001 191 IYVVGYAGSSQFHAYQINAMNGEL 214 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~tG~~ 214 (859)
+...+.++ .+..+|+.++..
T Consensus 255 l~s~s~d~----~v~iw~~~~~~~ 274 (355)
T 3vu4_A 255 LAVVSDKW----TLHVFEIFNDQD 274 (355)
T ss_dssp EEEEETTC----EEEEEESSCCSC
T ss_pred EEEEECCC----EEEEEEccCCCC
Confidence 44333333 477778877643
No 207
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=92.59 E-value=2.1 Score=51.41 Aligned_cols=148 Identities=10% Similarity=-0.014 Sum_probs=86.3
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCC---CcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGI---NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~---~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
++.++++|..+-|..+|+++|+. +..... ...+..+ ....++.+.+++. +.|..+|..+|+...-.......+
T Consensus 417 ~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i-~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 417 EGNLWFGTYLGNISYYNTRLKKF--QIIELEKNELLDVRVF-YEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp TSCEEEEETTEEEEEECSSSCEE--EECCSTTTCCCCEEEE-EECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSC
T ss_pred CCCEEEEeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEE-EECCCCCEEEEEC-CceEEEeCCCCeEEecccCccccc
Confidence 67899999877899999999864 332211 1122233 1234566777766 469999999988665443321111
Q ss_pred cCCcccccccccccCCCeEEEEe-CCEEEEEEcCCCcEEEEEeccC--cceeeeeEEEeecCCeEEEEEecCCceeEE-E
Q 003001 130 SKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAA--ESVEVQQVIQLDESDQIYVVGYAGSSQFHA-Y 205 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV~~-~g~l~ald~~tG~~~W~~~~~~--~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v-~ 205 (859)
. ...+. ....+.++.+++.+ ++.|+++|..+++... +.... +...+..+. ...++.+++.+..| + .
T Consensus 493 ~-~~~i~--~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~-~d~~g~lWi~T~~G-----lv~ 562 (781)
T 3v9f_A 493 L-ENFVR--SIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIY-RSSKGQMWLATGEG-----LVC 562 (781)
T ss_dssp S-CSCEE--EEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEE-ECTTSCEEEEETTE-----EEE
T ss_pred c-cceeE--EEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEE-ECCCCCEEEEECCC-----ceE
Confidence 0 00111 11345567888875 4679999998876443 22211 111122222 23577888766533 5 8
Q ss_pred EEEcCCCce
Q 003001 206 QINAMNGEL 214 (859)
Q Consensus 206 ald~~tG~~ 214 (859)
.+|+.+++.
T Consensus 563 ~~d~~~~~~ 571 (781)
T 3v9f_A 563 FPSARNFDY 571 (781)
T ss_dssp ESCTTTCCC
T ss_pred EECCCCCcE
Confidence 889988864
No 208
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=92.54 E-value=5.6 Score=46.42 Aligned_cols=144 Identities=12% Similarity=0.102 Sum_probs=84.2
Q ss_pred cCCCEEEEEeC------------------CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCC-------
Q 003001 51 TGRKRVVVSTE------------------ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG------- 105 (859)
Q Consensus 51 ~~~~~Vyvat~------------------~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g------- 105 (859)
++.+.||++++ ++.+.++|.++.+++|+...+.. ..++.+.-+++.++++..+
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~--pd~~~~spdGk~~~vt~~~se~~~~i 222 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN--LDNCDADYEGKWAFSTSYNSEKGMTL 222 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC--CCCEEECSSSSEEEEEESCTTCCSSH
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC--ccceEECCCCCEEEEEecCcccCcch
Confidence 35788999963 46899999999999999998543 2233222344555554422
Q ss_pred -------------------------------CeEEEEeCCC--CcE-eEEEeccCccccCCcccccccccccCCCeEEEE
Q 003001 106 -------------------------------STLRAWNLPD--GQM-VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS 151 (859)
Q Consensus 106 -------------------------------~~v~Ald~~t--G~l-lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~ 151 (859)
+.|..+|..+ |+. +-......... ...+ ..+ +..++|.
T Consensus 223 ~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~Ph--Gv~~-----sPD-Gk~v~V~ 294 (595)
T 1fwx_A 223 PEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPH--GCNM-----APD-KKHLCVA 294 (595)
T ss_dssp HHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCC--CEEE-----CTT-SSEEEEE
T ss_pred hhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCce--EEEE-----cCC-CCEEEEe
Confidence 1366777776 554 44444433221 1111 112 2356664
Q ss_pred --eCCEEEEEEcCCCc------------EEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 152 --SKGCLHAVSSIDGE------------ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 152 --~~g~l~ald~~tG~------------~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
.+.++..+|.++.+ +..+.+.. +.|..+... .++.+|+..+-.+ .|..+|.++
T Consensus 295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---~gP~h~aF~-~dG~aY~t~~lds---qV~kwdi~~ 361 (595)
T 1fwx_A 295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---LGPLHTAFD-GRGNAYTSLFLDS---QVVKWNIED 361 (595)
T ss_dssp CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---SCEEEEEEC-TTSEEEEEETTTT---EEEEEEHHH
T ss_pred CCCCCeEEEEECcccccccccccCcccceEEEcCCC---CCcceEEEC-CCCeEEEEEecCC---cEEEEEhhH
Confidence 37889999988653 33433322 235555432 3448887666554 477788776
No 209
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=92.32 E-value=11 Score=38.42 Aligned_cols=147 Identities=10% Similarity=0.060 Sum_probs=82.2
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcc
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~ 134 (859)
+++++.++.|.--|.+||+.+-...+.... .+..+....++..++.++.++.|+.||..+|+.+.......... .
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~----~ 113 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV----G 113 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE----E
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceE----E
Confidence 444455788999999999988877765442 34444222334455546667899999999999999887654332 1
Q ss_pred cccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEE-EeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 135 LVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 135 ~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~-~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
.. .. .+.+++ . .++.+...+..++...-. ....... ...+.....+..++..+.+| .+..+|+.+
T Consensus 114 ~~----~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~ 181 (318)
T 4ggc_A 114 SL----SW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE--VCGLRWAPDGRHLASGGNDN----LVNVWPSAP 181 (318)
T ss_dssp EE----EE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEEEETTS----CEEEEESSC
T ss_pred Ee----ec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCc--eEEEEEcCCCCEEEEEecCc----ceeEEECCC
Confidence 11 11 233333 2 367776666666543222 2111111 11121122334444433334 377789998
Q ss_pred Cceeeee
Q 003001 212 GELLNHE 218 (859)
Q Consensus 212 G~~~w~~ 218 (859)
|+.....
T Consensus 182 ~~~~~~~ 188 (318)
T 4ggc_A 182 GEGGWVP 188 (318)
T ss_dssp BTTBSCC
T ss_pred Ccccccc
Confidence 8765444
No 210
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=92.14 E-value=2.6 Score=50.49 Aligned_cols=198 Identities=7% Similarity=-0.056 Sum_probs=97.5
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcC-CCcceeeeeeeec--CEEEEEEcCCCeEEEEeCCCCcEe--EEEeccCc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG-INDVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQMV--WESFLRGS 127 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~-~~~~i~~l~~~~~--~~~V~Vs~~g~~v~Ald~~tG~ll--W~~~~~~~ 127 (859)
++.+++++.+|.|...|.++|+..=...+. ....+..+..... +..++.++.++.|+.||..++... ........
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 667999999999999999998621112222 1122333322222 445555666779999999988332 22222211
Q ss_pred cccCCccccccc--------ccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEecc--CcceeeeeEEEeecC--CeEEEE
Q 003001 128 KHSKPLLLVPTN--------LKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFA--AESVEVQQVIQLDES--DQIYVV 194 (859)
Q Consensus 128 ~ls~~~~~~~~~--------~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~v~~~~~--~~vyvv 194 (859)
.. ......+.. ...+ +..+++. .||.+...|..+|...|..... ........+.....+ +..++.
T Consensus 147 ~v-~~l~~~p~~~~~~~~~~~~~d-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 147 GV-NSASWAPATIEEDGEHNGTKE-SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp CE-EEEEECCCC---------CGG-GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred ce-EEEEecCcccccccccccCCC-CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 11 011111100 0001 2233333 4899999998888665543321 111112223222231 344443
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeecccCccC---ceEEe-cCcEEEEEECCCCeEEEEEeecC
Q 003001 195 GYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG---DVALV-SSDTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~---~~~~v-~~~~lv~~d~~~~~l~v~~L~sg 256 (859)
+...+ .+..+|..+|+..+...........+ .+.+- .+..+++.. ..|.+++-++.++
T Consensus 225 ~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 225 VSQDR---TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG-GDNKVTLWKENLE 286 (753)
T ss_dssp EESSS---CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC-SSSCEECCBCCSS
T ss_pred EecCC---EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc-CCCEEEEEecCCC
Confidence 43322 37778888886554443322211111 11221 334555554 3577888777753
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=92.14 E-value=6.5 Score=41.86 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=60.5
Q ss_pred CCEEEEEeC---CC--EEEEEECCCCccceEEEcCCC--------cceeeeeeeecCEEEEE-EcC-----CCeEEEEeC
Q 003001 53 RKRVVVSTE---EN--VIASLDLRHGEIFWRHVLGIN--------DVVDGIDIALGKYVITL-SSD-----GSTLRAWNL 113 (859)
Q Consensus 53 ~~~Vyvat~---~g--~l~ALd~~tG~ilWR~~l~~~--------~~i~~l~~~~~~~~V~V-s~~-----g~~v~Ald~ 113 (859)
++++|++.. .+ .|.-++ +|++. .++.. ....++. ...++.+++ ... +.+|..||+
T Consensus 27 ~g~~~v~~~~~~~~~~~l~~~~--~g~~~---~~p~~~~~~~~~~~~p~gv~-~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPEMQVAELT--QDGLI---PFPPQSGNAIITFDTVLGIK-SDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp TSCEEEEECGGGCCSCSEEEEE--TTEEE---ESCCCCSSCCCCCSCEEEEE-ECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred CCCEEEEeCCCCCCceEEEEEC--CCCee---cCCCcccCcccceeEeeEEE-EcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 678888852 34 788888 78653 22110 0122331 223344444 322 468999999
Q ss_pred CCCcEeEEEeccCccccCCccccccccccc-CCCeEEEE-----eCCEEEEEEcCCCcEEEEE
Q 003001 114 PDGQMVWESFLRGSKHSKPLLLVPTNLKVD-KDSLILVS-----SKGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 114 ~tG~llW~~~~~~~~ls~~~~~~~~~~~~~-~~~~VvV~-----~~g~l~ald~~tG~~~W~~ 170 (859)
.+|+++-.+.+..... ... ..+....++ .++.+++. .++.|+.+|..+|+. |+.
T Consensus 101 ~tg~~~~~~~~~~~~~-~~~-~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~ 160 (343)
T 2qe8_A 101 LNNQLSRVIYLPPPIT-LSN-SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARV 160 (343)
T ss_dssp TTTEEEEEEECCTTTS-CTT-CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEE
T ss_pred CCCeEEEEEECChhhc-ccc-cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEE
Confidence 9999877776643221 000 000111233 14677775 357899999998874 654
No 212
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.00 E-value=13 Score=38.68 Aligned_cols=190 Identities=6% Similarity=-0.023 Sum_probs=103.1
Q ss_pred CCCEEEEEeCC----------CEEEEEECCCCccceEEEcCCCccee-eeeeeecCEEEEEEcCC-----CeEEEEeCCC
Q 003001 52 GRKRVVVSTEE----------NVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPD 115 (859)
Q Consensus 52 ~~~~Vyvat~~----------g~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g-----~~v~Ald~~t 115 (859)
.++.||+.... +.+..+|+.++ .|+..-+.+..-. ......++.+++++|.+ ..+..||..+
T Consensus 69 ~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN--QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp ETTEEEEECCEEEETTEEEECCCEEEEETTTT--EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTT
T ss_pred ECCEEEEECCCcCCCCCCeecceEEEECCCCC--eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCC
Confidence 37788887543 56899999887 4987643332111 11123566777776521 3688999887
Q ss_pred CcEeEEEeccCccccCCcccccccccccCCCeEEEEe-------CCEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeec
Q 003001 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDE 187 (859)
Q Consensus 116 G~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~ 187 (859)
+ .|+.-...+.- ......... ++.+++++ -..+..+|..++ .|+.-.+.+.- ....+ ...
T Consensus 147 ~--~W~~~~~~p~~-----r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~--~~~ 214 (308)
T 1zgk_A 147 D--EWHLVAPMLTR-----RIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGV--CVL 214 (308)
T ss_dssp T--EEEECCCCSSC-----CBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEE--EEE
T ss_pred C--eEeECCCCCcc-----ccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceE--EEE
Confidence 6 48754322211 111111122 56777763 245888888776 58764332211 01112 235
Q ss_pred CCeEEEEEecCC--ceeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEEEC----CCCeEEEEEeecCe
Q 003001 188 SDQIYVVGYAGS--SQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDT----TRSILVTVSFKNRK 257 (859)
Q Consensus 188 ~~~vyvv~~~g~--~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~----~~~~l~v~~L~sg~ 257 (859)
++.+|++|-..+ ..-.+..+|+.++ .|+..-..|..... .+.+.++.+++..-. ....+.+.++.+++
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 788998874321 1134888999876 58775444443333 233334444443211 12356777777765
No 213
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=91.80 E-value=26 Score=41.75 Aligned_cols=152 Identities=9% Similarity=0.083 Sum_probs=85.3
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEc-----CCC---cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVL-----GIN---DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l-----~~~---~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
++.++++|..+-|..+|++++...+-... ... ..+..+ ....++.+.+++.++-|..+|..++...+-.
T Consensus 323 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i-~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-- 399 (781)
T 3v9f_A 323 FNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV-CDDGQGKLWIGTDGGGINVFENGKRVAIYNK-- 399 (781)
T ss_dssp SCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE-EECTTSCEEEEEBSSCEEEEETTEEEEECC---
T ss_pred CCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE-EEcCCCCEEEEeCCCcEEEEECCCCeEEEcc--
Confidence 56799999887799999988765432211 111 112223 1234466777775456999999877654321
Q ss_pred cCccccCCcccccccccccCCCeEEEEe-CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
....+... .+.. ...+.++.+++.. ++.|+++|..+|+...-.....+...+..+. ...++.+++.+. ++
T Consensus 400 ~~~~~~~~-~v~~--i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~-~d~~g~lwigt~-~G---- 470 (781)
T 3v9f_A 400 ENRELLSN-SVLC--SLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY-EDKNKKIWIGTH-AG---- 470 (781)
T ss_dssp ----CCCS-BEEE--EEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE-ECTTSEEEEEET-TE----
T ss_pred CCCCCCCc-ceEE--EEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE-ECCCCCEEEEEC-Cc----
Confidence 11111001 1111 1234467888875 5789999999987543321111111122222 245788998665 33
Q ss_pred EEEEEcCCCceee
Q 003001 204 AYQINAMNGELLN 216 (859)
Q Consensus 204 v~ald~~tG~~~w 216 (859)
+..+|+.+|+...
T Consensus 471 l~~~~~~~~~~~~ 483 (781)
T 3v9f_A 471 VFVIDLASKKVIH 483 (781)
T ss_dssp EEEEESSSSSCCE
T ss_pred eEEEeCCCCeEEe
Confidence 8899999887643
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=91.74 E-value=14 Score=38.29 Aligned_cols=147 Identities=7% Similarity=0.066 Sum_probs=80.9
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccC
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA 174 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~ 174 (859)
++.++++...++.|+.||+.+|+.. .+....... .+ ..+.++.+++..++.|+.+|.++|+...-.....
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~-----~i----~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVS-----SV----ALRQSGGYVATIGTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEE-----EE----EEBTTSSEEEEETTEEEEEETTTTEEEEEEECCT
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceE-----EE----EECCCCCEEEEECCeEEEEECCCCcEEEEEecCC
Confidence 3456666666779999999998763 122222111 11 2233566777678899999999998765444321
Q ss_pred --cceeeeeEEEeecCCeEEEEEecCC--------ceeEEEEEEcCCCceeeee-eeecccCccCceEEe-cCcEEEEEE
Q 003001 175 --ESVEVQQVIQLDESDQIYVVGYAGS--------SQFHAYQINAMNGELLNHE-TAAFSGGFVGDVALV-SSDTLVTLD 242 (859)
Q Consensus 175 --~~~~~~~~v~~~~~~~vyvv~~~g~--------~~~~v~ald~~tG~~~w~~-~v~~~~~~s~~~~~v-~~~~lv~~d 242 (859)
+...+..+. ...++.+|+...... ....++.+|+. |+..-.. ....|.+ +.+- .+..+++.|
T Consensus 94 ~~~~~~~~di~-~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~png----i~~spdg~~lyv~~ 167 (297)
T 3g4e_A 94 DKKNNRFNDGK-VDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNG----LDWSLDHKIFYYID 167 (297)
T ss_dssp TCSSEEEEEEE-ECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEE----EEECTTSCEEEEEE
T ss_pred CCCCCCCCCEE-ECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccc----eEEcCCCCEEEEec
Confidence 112222232 234677887654321 23468888874 5443211 1111211 1121 334566777
Q ss_pred CCCCeEEEEEe--ecCe
Q 003001 243 TTRSILVTVSF--KNRK 257 (859)
Q Consensus 243 ~~~~~l~v~~L--~sg~ 257 (859)
...+.+++.++ .+|.
T Consensus 168 ~~~~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQ 184 (297)
T ss_dssp GGGTEEEEEEECTTTCC
T ss_pred CCCCcEEEEeccCCCCc
Confidence 66677888877 4554
No 215
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=91.67 E-value=15 Score=43.05 Aligned_cols=162 Identities=9% Similarity=0.112 Sum_probs=81.8
Q ss_pred cCCCEEEEEeCCCEEEEEECCCC---ccceEEEcCCCcceeeeee-eecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccC
Q 003001 51 TGRKRVVVSTEENVIASLDLRHG---EIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG---~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~ 126 (859)
++++.|++++. +.|..+|..+| ++. + .......+..+.. +.|+.+++++ + +.|+.||..+|+..--.....
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~-l~~~~~~~~~~~~SPDG~~la~~~-~-~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVR-Q-LTHGEGFATDAKLSPKGGFVSFIR-G-RNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCC-B-CCCSSSCEEEEEECTTSSEEEEEE-T-TEEEEEETTTTEEEECCCCCC
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEE-E-cccCCcccccccCCCCCCEEEEEe-C-CcEEEEecCCCCEEEeccCCc
Confidence 34566777666 89999999998 442 1 1111112222211 2344455544 3 489999999987653222111
Q ss_pred ccccCCc--cc------ccccccccCCCe-EEEE-eCC---------------------------------EEEEEEcCC
Q 003001 127 SKHSKPL--LL------VPTNLKVDKDSL-ILVS-SKG---------------------------------CLHAVSSID 163 (859)
Q Consensus 127 ~~ls~~~--~~------~~~~~~~~~~~~-VvV~-~~g---------------------------------~l~ald~~t 163 (859)
.....+. .+ .........++. +++. .++ .|+.+|..+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 1000000 00 000001122343 3332 233 778888888
Q ss_pred -CcEEEEEeccCcceeeeeEEEeecCCeEEEEEec-CCceeEEEEEEcCCCceeeee
Q 003001 164 -GEILWTRDFAAESVEVQQVIQLDESDQIYVVGYA-GSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 164 -G~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~-g~~~~~v~ald~~tG~~~w~~ 218 (859)
|+..+..........+..+.. .++..+++.+.. +.....+..+|+.+|+.....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 876654322111112233433 456666665542 334567999999999876444
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=91.63 E-value=2.4 Score=44.40 Aligned_cols=131 Identities=14% Similarity=0.148 Sum_probs=70.2
Q ss_pred CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCC------CeEEEEeCCCCcEeEEEeccCccccCCccc
Q 003001 62 ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG------STLRAWNLPDGQMVWESFLRGSKHSKPLLL 135 (859)
Q Consensus 62 ~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g------~~v~Ald~~tG~llW~~~~~~~~ls~~~~~ 135 (859)
.+.|+.+|+++|++.--..+.. ..++....++..++++... +.|+.||...+. +-......... ..
T Consensus 168 ~~~v~~~d~~~g~~~~~~~~~~---p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~----~~ 239 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMADLDH---PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVP----DG 239 (305)
T ss_dssp CEEEEEECSSSCCCEEEEEESS---EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCS----SS
T ss_pred CCeEEEEcCCCCcEEEEecCCC---CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECC----CC
Confidence 3689999999997542212211 1233222334445554332 589999987665 22211110000 01
Q ss_pred ccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 136 VPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 136 ~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
.+.+...+.++.+++...+.|+.+|. +|+.+-.+..+.. +..+.....++.+|+.+. + .++.+++
T Consensus 240 ~pdgi~~d~~G~lwv~~~~gv~~~~~-~g~~~~~~~~~~~---~~~~~f~~d~~~L~it~~-~----~l~~~~~ 304 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSSGTGVCVFDS-DGQLLGHIPTPGT---ASNCTFDQAQQRLFITGG-P----CLWMLPL 304 (305)
T ss_dssp CCCSEEECTTSCEEECCSSEEEEECT-TSCEEEEEECSSC---CCEEEECTTSCEEEEEET-T----EEEEEEC
T ss_pred CCCeEEECCCCCEEEecCCcEEEECC-CCCEEEEEECCCc---eeEEEEeCCCCEEEEEcC-C----eEEEEEC
Confidence 11122445567888876667999997 7888877766542 223332334556776443 3 2666654
No 217
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=91.58 E-value=8.9 Score=42.78 Aligned_cols=147 Identities=9% Similarity=0.102 Sum_probs=74.4
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCC-----CeEEEEeCCCCcEeEEEeccCc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG-----STLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG~llW~~~~~~~ 127 (859)
++.||++...+.|..+|+++|++.-- ........++.....++ ++++..+ ..+..++...+. .+...+.
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~--~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~-~~~~~~~-- 225 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIK--TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF-TERLSLC-- 225 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEE--CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT-CCEEEEE--
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEe--ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe-ecccccc--
Confidence 47899998778999999998876422 22111122332222333 5554432 125555554332 2222211
Q ss_pred cccCCcccccccccccC-CCeEEEE--eCCEEEEEEcCCCcEEEEEecc-CcceeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 128 KHSKPLLLVPTNLKVDK-DSLILVS--SKGCLHAVSSIDGEILWTRDFA-AESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~-~~~VvV~--~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
.+ ..+....++. ++.+++. .+++|+++|..+|...+..... .... ...+.....++.+|+.....+ +
T Consensus 226 ~~-----~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~-~~~ia~dpdG~~LYvad~~~~---~ 296 (433)
T 4hw6_A 226 NA-----RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGS-NFHIVWHPTGDWAYIIYNGKH---C 296 (433)
T ss_dssp EC-----SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSS-CEEEEECTTSSEEEEEETTTT---E
T ss_pred cc-----CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCC-cccEEEeCCCCEEEEEeCCCC---E
Confidence 11 0111113343 5778885 4789999999999875443221 1111 112322234455887554333 4
Q ss_pred EEEEE--cCCCce
Q 003001 204 AYQIN--AMNGEL 214 (859)
Q Consensus 204 v~ald--~~tG~~ 214 (859)
+..++ ..+|..
T Consensus 297 I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 297 IYRVDYNRETGKL 309 (433)
T ss_dssp EEEEEBCTTTCCB
T ss_pred EEEEeCCCCCccc
Confidence 55555 445643
No 218
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=91.55 E-value=6.3 Score=46.62 Aligned_cols=156 Identities=13% Similarity=0.041 Sum_probs=77.0
Q ss_pred cCCCEEEEE-eCCC----EEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcCC---------------CeEE
Q 003001 51 TGRKRVVVS-TEEN----VIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDG---------------STLR 109 (859)
Q Consensus 51 ~~~~~Vyva-t~~g----~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g---------------~~v~ 109 (859)
+++++|..+ ++.| .|.-+|.++|+.+=. .+... .+..+.- +.++.+++.+..+ ..|+
T Consensus 134 PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (710)
T 2xdw_A 134 EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211 (710)
T ss_dssp TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence 445555444 4344 899999999986421 11111 1112211 2345555654332 2388
Q ss_pred EEeCCCCc----EeEEEeccCccccCCcccccccccccCCC-eEEEE-e-----CCEEEEEEcCC------CcEEEEEec
Q 003001 110 AWNLPDGQ----MVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVS-S-----KGCLHAVSSID------GEILWTRDF 172 (859)
Q Consensus 110 Ald~~tG~----llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~-~-----~g~l~ald~~t------G~~~W~~~~ 172 (859)
.|+..+|. ++++...... . ... .....++ .+++. . +..++.+|..+ |...|+.-.
T Consensus 212 ~~~l~t~~~~~~~v~~~~~~~~-~-----~~~--~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 212 YHVLGTDQSEDILCAEFPDEPK-W-----MGG--AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp EEETTSCGGGCEEEECCTTCTT-C-----EEE--EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred EEECCCCcccceEEeccCCCCe-E-----EEE--EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 88888776 3333211010 0 000 0112234 33332 2 45788888877 643332211
Q ss_pred cCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCce-eeee
Q 003001 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL-LNHE 218 (859)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~-~w~~ 218 (859)
....... ... +..++.+|+.+..++...+++.+|+.+|+. .|+.
T Consensus 284 ~~~~~~~-~~~-s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 284 DNFEGEY-DYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp CSSSSCE-EEE-EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred CCCCcEE-EEE-eccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 1111111 122 346778888776554456799999998864 4554
No 219
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=91.52 E-value=9.2 Score=41.90 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=79.2
Q ss_pred EEEEEeCCCEEEEEECCCCcc-ceEEE----c-CCCcceeeeeeee-cCEEEEEEcCCCeEEEEeCCCC---cEeEEEec
Q 003001 55 RVVVSTEENVIASLDLRHGEI-FWRHV----L-GINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDG---QMVWESFL 124 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG~i-lWR~~----l-~~~~~i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~tG---~llW~~~~ 124 (859)
.+++++.+|.|...|..++.. .+... + .....+..+.... ++.+++.++.++.|+.||..++ +.++....
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 788899999999999988543 23211 1 1111232231122 4445555556679999999988 57777754
Q ss_pred cCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCC-CcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCce
Q 003001 125 RGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSID-GEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (859)
Q Consensus 125 ~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~ 201 (859)
..... ..+.+-+ . ...+++ . .+|.|..+|..+ ++++-........ ...+.....+..+++.+...+
T Consensus 276 ~~~~v-~~i~~~p-----~-~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~--v~~i~~sp~~~~~l~s~~~d~-- 344 (430)
T 2xyi_A 276 HTAEV-NCLSFNP-----Y-SEFILATGSADKTVALWDLRNLKLKLHSFESHKDE--IFQVQWSPHNETILASSGTDR-- 344 (430)
T ss_dssp CSSCE-EEEEECS-----S-CTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC--EEEEEECSSCTTEEEEEETTS--
T ss_pred CCCCe-EEEEeCC-----C-CCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC--EEEEEECCCCCCEEEEEeCCC--
Confidence 43322 1111111 1 233444 3 489999999988 4555555433222 222322233444554443332
Q ss_pred eEEEEEEcCC
Q 003001 202 FHAYQINAMN 211 (859)
Q Consensus 202 ~~v~ald~~t 211 (859)
.+..+|+.+
T Consensus 345 -~i~iwd~~~ 353 (430)
T 2xyi_A 345 -RLHVWDLSK 353 (430)
T ss_dssp -CCEEEEGGG
T ss_pred -cEEEEeCCC
Confidence 366677766
No 220
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.50 E-value=15 Score=38.21 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=78.0
Q ss_pred CCEEEEEeCC-----CEEEEEECCCCccceEEEcCC-C-cceeeeeeeecCEEEEEEcC-------CCeEEEEeCCCCcE
Q 003001 53 RKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGI-N-DVVDGIDIALGKYVITLSSD-------GSTLRAWNLPDGQM 118 (859)
Q Consensus 53 ~~~Vyvat~~-----g~l~ALd~~tG~ilWR~~l~~-~-~~i~~l~~~~~~~~V~Vs~~-------g~~v~Ald~~tG~l 118 (859)
++++|+++.. +.|..+|+++|+.. +..... . ..+..+. ...++.++++.. .+.|+.+|+.+|+.
T Consensus 97 dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~ 174 (333)
T 2dg1_A 97 DGRLFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLSTAYCIDDMV-FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV 174 (333)
T ss_dssp TSCEEEEECTTSSSCCEEEEECTTSCSCE-EEECSSSSCCCEEEEE-ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE
T ss_pred CCcEEEEeCCCCCCCceEEEEeCCCCEEE-EEEccCccCCcccceE-ECCCCCEEEEeccccccCCCceEEEEeCCCCEE
Confidence 5678888765 48999999888753 121111 1 1122221 222334444433 25799999877765
Q ss_pred eEEEeccCccccCCcccccccccccCCC-eEEEEe--CCEEEEEEcC-CCcEEEEEe------ccCcceeeeeEEEeecC
Q 003001 119 VWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVSS--KGCLHAVSSI-DGEILWTRD------FAAESVEVQQVIQLDES 188 (859)
Q Consensus 119 lW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~~--~g~l~ald~~-tG~~~W~~~------~~~~~~~~~~~v~~~~~ 188 (859)
.--....... .. + ..+.++ .+++.. ++.|+.+|.. +|....... .... ..+..+. ...+
T Consensus 175 ~~~~~~~~~~--~~--i-----~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~-~d~~ 243 (333)
T 2dg1_A 175 TPIIQNISVA--NG--I-----ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC-IDSD 243 (333)
T ss_dssp EEEEEEESSE--EE--E-----EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE-EBTT
T ss_pred EEeecCCCcc--cc--e-----EECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE-ECCC
Confidence 4221110000 00 1 222244 466653 6899999987 465444321 1111 1233332 2356
Q ss_pred CeEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003001 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (859)
Q Consensus 189 ~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (859)
+.+|+....++ .+..+|+ +|+.+....
T Consensus 244 G~l~v~~~~~~---~v~~~d~-~g~~~~~~~ 270 (333)
T 2dg1_A 244 DNLYVAMYGQG---RVLVFNK-RGYPIGQIL 270 (333)
T ss_dssp CCEEEEEETTT---EEEEECT-TSCEEEEEE
T ss_pred CCEEEEEcCCC---EEEEECC-CCCEEEEEE
Confidence 77887665433 4788888 677765553
No 221
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=91.46 E-value=16 Score=38.52 Aligned_cols=194 Identities=11% Similarity=0.106 Sum_probs=92.1
Q ss_pred EEEEEeCC----C--EEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcC----CCeEEEEeC--CCCcEeEEE
Q 003001 55 RVVVSTEE----N--VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD----GSTLRAWNL--PDGQMVWES 122 (859)
Q Consensus 55 ~Vyvat~~----g--~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~----g~~v~Ald~--~tG~llW~~ 122 (859)
.+|+++-. + .++.+|+++|+....... .......+....++..+++++. .+.++.|+. .+|++.--.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 46777532 2 477789999998877665 2222222322223444444433 257876654 457654333
Q ss_pred eccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEE----Eecc--Ccc------eeeeeEEEeecC
Q 003001 123 FLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWT----RDFA--AES------VEVQQVIQLDES 188 (859)
Q Consensus 123 ~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~----~~~~--~~~------~~~~~~v~~~~~ 188 (859)
....... ....+ ..+ ++.+++. .++.+..++..++..+.. .... .+. ..+..+..+..+
T Consensus 94 ~~~~~~~--~p~~~----~~d-g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 94 TQKTMGA--DPCYL----TTN-GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp EEECSSS--CEEEE----EEC-SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred EeccCCC--CcEEE----EEC-CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 3221110 11111 122 3456664 377888888764332211 1111 000 001223222344
Q ss_pred CeEEEEEecCCceeEEEEEEcCCC----c-eeee---eeeecccCccCceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003001 189 DQIYVVGYAGSSQFHAYQINAMNG----E-LLNH---ETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 189 ~~vyvv~~~g~~~~~v~ald~~tG----~-~~w~---~~v~~~~~~s~~~~~v--~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+|+.+. +...+.++.++..+| + .... .....+.+.....+.. .+..+++.+...+.+.+.++.++.
T Consensus 167 ~~l~~~~~-~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 167 KYLLADDL-GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp SEEEEEET-TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CEEEEEeC-CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 45776543 334556666666666 4 2221 1111121111112222 344666777667889999998876
No 222
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=91.43 E-value=8.3 Score=47.38 Aligned_cols=155 Identities=12% Similarity=0.103 Sum_probs=87.0
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccC-----c
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG-----S 127 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~-----~ 127 (859)
+..++.++.++.|.-.|.++|+.+-....... +..+....++..+++++.++.|+.||..+|++. .+.... .
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~--V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~ 145 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGK--ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSF 145 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEEEECSSC--EEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHT
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEEEcCCCC--EEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccccccc
Confidence 44799999999999999999998877754332 433322234456666666779999999999874 222100 0
Q ss_pred cc-cCCcccccccccccCC--CeEEEE-eCCEEEEEEcCCCcEEEEEeccCc----------------ceeeeeEEEeec
Q 003001 128 KH-SKPLLLVPTNLKVDKD--SLILVS-SKGCLHAVSSIDGEILWTRDFAAE----------------SVEVQQVIQLDE 187 (859)
Q Consensus 128 ~l-s~~~~~~~~~~~~~~~--~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~----------------~~~~~~~v~~~~ 187 (859)
.. ....++.. .....+ +.+++. .+|.+ ..|..+|+.+-.+....+ .-....+.....
T Consensus 146 ~~~~h~~~V~s--l~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 146 FPAARLSPIVS--IQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp CSSSCCCCCCE--EEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccccCCCCeEE--EEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 00 00001110 011111 233333 48888 889999987766543200 011222322223
Q ss_pred CCeEEEEEecCCceeEEEEEEcCCCceeee
Q 003001 188 SDQIYVVGYAGSSQFHAYQINAMNGELLNH 217 (859)
Q Consensus 188 ~~~vyvv~~~g~~~~~v~ald~~tG~~~w~ 217 (859)
+..++.+...+ .+..+|..+|+.+-.
T Consensus 223 -g~~lasgs~Dg---~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 223 -SLHIITIHEDN---SLVFWDANSGHMIMA 248 (902)
T ss_dssp -SSEEEEEETTC---CEEEEETTTCCEEEE
T ss_pred -CCEEEEEECCC---eEEEEECCCCcEEEE
Confidence 44444443332 478889999988754
No 223
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.28 E-value=2.1 Score=47.30 Aligned_cols=155 Identities=8% Similarity=0.011 Sum_probs=79.6
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls 130 (859)
++..++.++.+|.|...|.+++............ .+..+....++..++.++.++.|+.||.. |+.++.........
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v- 253 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKV- 253 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCE-
T ss_pred CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceE-
Confidence 3567999999999999999877654333222111 11222222244455556667899999974 66666554433221
Q ss_pred CCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCc-ceeeeeEEEeecCCeEEEEEecCCceeEEEEE
Q 003001 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAE-SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (859)
Q Consensus 131 ~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~al 207 (859)
....+-+ . ...+++ . .||.+...|..+++..-......+ ......+..+..+..++..+.+| .+..+
T Consensus 254 ~~v~~~p-----~-~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~----~i~iw 323 (435)
T 4e54_B 254 THVALNP-----C-CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS----EIRVY 323 (435)
T ss_dssp EEEEECT-----T-CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS----CEEEE
T ss_pred EeeeecC-----C-CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC----EEEEE
Confidence 0111111 1 233444 3 377787777776653211111000 00011121112344455444444 37778
Q ss_pred EcCCCceeeee
Q 003001 208 NAMNGELLNHE 218 (859)
Q Consensus 208 d~~tG~~~w~~ 218 (859)
|+.+|+.....
T Consensus 324 d~~~~~~~~~~ 334 (435)
T 4e54_B 324 SASQWDCPLGL 334 (435)
T ss_dssp ESSSSSSEEEE
T ss_pred ECCCCccceEE
Confidence 99888766544
No 224
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.27 E-value=19 Score=38.95 Aligned_cols=108 Identities=21% Similarity=0.284 Sum_probs=61.2
Q ss_pred EEEEEeCCCEEEEEECCCCccceEEEcCCC----cceeeeeee--------ecCEEEEEEcCCCeEEEEeCCCCcEeEEE
Q 003001 55 RVVVSTEENVIASLDLRHGEIFWRHVLGIN----DVVDGIDIA--------LGKYVITLSSDGSTLRAWNLPDGQMVWES 122 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~----~~i~~l~~~--------~~~~~V~Vs~~g~~v~Ald~~tG~llW~~ 122 (859)
.+..++.++.|.-.|.++|+..-.+.+..- +.+..+... .++.++.-++.+++|+-||..++...-..
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence 466777889999999999887766655321 123222111 12233333456789999999888776554
Q ss_pred ecc-CccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEE
Q 003001 123 FLR-GSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 123 ~~~-~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~ 170 (859)
... .++. ....-| + +...++ . .||.+...|..+|+...+.
T Consensus 183 ~~~~~~v~--~v~~~p-----~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 183 YPLSSPGI--SVQFRP-----S-NPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp EECSSCEE--EEEEET-----T-EEEEEEEEETTSEEEEEETTCCC-----
T ss_pred cCCCCCcE--EEEECC-----C-CCceEEecCCCCEEEEEECCCCcccccc
Confidence 433 3222 111211 1 223344 3 4999999999999876554
No 225
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=91.13 E-value=1.4 Score=48.05 Aligned_cols=155 Identities=8% Similarity=-0.023 Sum_probs=82.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEE------cCCC-cceeeeeeeecC-EEEEEEcCCCeEEEEeCCCCcE----e
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHV------LGIN-DVVDGIDIALGK-YVITLSSDGSTLRAWNLPDGQM----V 119 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~------l~~~-~~i~~l~~~~~~-~~V~Vs~~g~~v~Ald~~tG~l----l 119 (859)
++..++++ .+|.|.-.|.+++...++.. +... ..+..+.....+ ..++.++.++.|+.||..+|+. .
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 34555555 89999999999766666642 2111 123333212222 4555566677999999999987 5
Q ss_pred EEEeccCcccc--------CCcccccccccccCCCeEEE-EeCCEEEEEEcCC-CcEEEEEeccCccee-----------
Q 003001 120 WESFLRGSKHS--------KPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSID-GEILWTRDFAAESVE----------- 178 (859)
Q Consensus 120 W~~~~~~~~ls--------~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~t-G~~~W~~~~~~~~~~----------- 178 (859)
........... .....+ ....++..++ .++|.+...|..+ |+++-++........
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~----~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDV----KFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEE----EECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eEeccCCCccccccccccCceEEEE----EECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 55554432000 000111 1122444444 4568999999887 777655544321100
Q ss_pred --eeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCcee
Q 003001 179 --VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (859)
Q Consensus 179 --~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~ 215 (859)
...+..+..+..++..+.+| .+..+|..+|+.+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg----~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNN----FFRMFDRNTKRDI 377 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTT----EEEEEETTTCCEE
T ss_pred ccceEEEECCCCCEEEEeccCC----EEEEEEcCCCcce
Confidence 01122222334443333333 5888899998876
No 226
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=90.91 E-value=7.5 Score=45.51 Aligned_cols=103 Identities=7% Similarity=-0.060 Sum_probs=52.9
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCC-----------------cceeeeeeeecCEEEEEEcCCCeEEEEeCCC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-----------------DVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-----------------~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~t 115 (859)
++.++..+.+| | .+|.+||+.+=+..+... ..+..+....+ +.++++.+ +.++.||..+
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~-~~i~~~d~~~ 110 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ-GGLVGFDMLA 110 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET-TEEEEEETTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC-CEEEEEECCC
Confidence 55666666777 6 999999986201111110 11222322223 44444544 6999999999
Q ss_pred CcEeEEEeccCccccCCcccccccccccCCCe-EEEEeCCEEEEEEcCC-----CcEEE
Q 003001 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSL-ILVSSKGCLHAVSSID-----GEILW 168 (859)
Q Consensus 116 G~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~-VvV~~~g~l~ald~~t-----G~~~W 168 (859)
|++.-........ ....+ ..++. ++...++.|+.+|..+ |+.+-
T Consensus 111 ~~~~~l~~~~~~~--~~~~~-------SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~ 160 (706)
T 2z3z_A 111 RKVTYLFDTNEET--ASLDF-------SPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA 160 (706)
T ss_dssp TEEEEEECCTTCC--TTCEE-------CTTSSEEEEEETTEEEEEECBCTTSCCCCCEE
T ss_pred CceEEccCCcccc--cCCcC-------CCCCCEEEEEECCeEEEEecCcccccCCCcEE
Confidence 9875443322221 11112 22443 4445789999999998 87653
No 227
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=90.88 E-value=12 Score=41.61 Aligned_cols=150 Identities=8% Similarity=-0.018 Sum_probs=74.3
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcC-C----CeEEEEeCCCCcEeEEEeccCc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-G----STLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~-g----~~v~Ald~~tG~llW~~~~~~~ 127 (859)
++.||+++..+.|..+|++++++. ..........++.....++.++++.. + ..+..++. +|...+...+..
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~--~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~- 224 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVS--TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK- 224 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEE--EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-
T ss_pred CCeEEEEeCCCcEEEEECCCCEEE--EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-
Confidence 577999988889999999887642 22221111223322223444555543 1 13444554 454443222221
Q ss_pred cccCCcccccccccccC-CCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 128 KHSKPLLLVPTNLKVDK-DSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~-~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
+.. +....++. ++.+++. .+++|++++..++...-....+... .|..+.....++.+|+..... ..+..
T Consensus 225 -~~~-----p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~-~P~gia~~pdG~~lyv~d~~~-~~I~~ 296 (430)
T 3tc9_A 225 -GQN-----CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG-WEFHIQFHPSGNYAYIVVVNQ-HYILR 296 (430)
T ss_dssp -CSS-----CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS-CCEEEEECTTSSEEEEEETTT-TEEEE
T ss_pred -CCC-----ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC-cceeEEEcCCCCEEEEEECCC-CEEEE
Confidence 100 11112333 5677875 4889999999888752222222211 133443223444588765443 33444
Q ss_pred EEEEcCCCce
Q 003001 205 YQINAMNGEL 214 (859)
Q Consensus 205 ~ald~~tG~~ 214 (859)
+.+|..+|+.
T Consensus 297 ~~~d~~~~~~ 306 (430)
T 3tc9_A 297 SDYDWKTKRL 306 (430)
T ss_dssp EEEETTTTEE
T ss_pred EeCCcccccc
Confidence 4455445544
No 228
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=90.67 E-value=14 Score=36.63 Aligned_cols=101 Identities=12% Similarity=-0.047 Sum_probs=57.0
Q ss_pred CCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-EeCCEEEEEEcCC-CcEEEEEeccCcceeeee
Q 003001 104 DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSID-GEILWTRDFAAESVEVQQ 181 (859)
Q Consensus 104 ~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~ 181 (859)
.++.|+.||..+|+............ .. ....++..++ ..++.++.+|..+ |+..-........ .+..
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~--~~-------~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~ 89 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFE--AP-------NWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI-CNND 89 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCE--EE-------EECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC-BCSC
T ss_pred cceeEEEEeCCCCceeeeccCCcceE--ee-------EECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc-cccc
Confidence 35789999999999886555433221 11 1122454444 5799999999999 8765332222111 1112
Q ss_pred EEEeecCCeEEEEEecCCceeEEEEEEcCCCce
Q 003001 182 VIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (859)
Q Consensus 182 ~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~ 214 (859)
+..+..+..+++.+........+..++..+|+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~ 122 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP 122 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence 222334455555443322245788889888764
No 229
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=90.58 E-value=26 Score=39.40 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=88.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++..+++++.++.+.-.|. +|+.+-.. ......+..+....++..++.++.++.++.||.....+. .........
T Consensus 273 d~~~l~~~~~d~~i~~w~~-~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~-~~~~~~~~v-- 347 (577)
T 2ymu_A 273 DGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSV-- 347 (577)
T ss_dssp TSSEEEEEETTSCEEEEET-TSCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-EECCCSSCE--
T ss_pred CCCEEEEEeCCCEEEEEeC-CCcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE-EEeCCCCCE--
Confidence 4567888899999988885 56544322 122223333322223344444555679999998655443 333222211
Q ss_pred CcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
..+ ....++..++ . .+|.+...| .+|+.+.+....... +..+..+ .++..++.+...+ .+..+|
T Consensus 348 --~~~----~~s~~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~~--v~~~~~s-~dg~~l~~~~~d~---~v~~~~- 413 (577)
T 2ymu_A 348 --WGV----AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS--VRGVAFS-PDGQTIASASDDK---TVKLWN- 413 (577)
T ss_dssp --EEE----EECTTSSEEEEEETTSEEEEEE-TTCCEEEEEECCSSC--EEEEEEC-TTSSCEEEEETTS---EEEEEC-
T ss_pred --EEE----EECCCCCEEEEEeCCCEEEEEc-CCCCEEEEecCCCCC--eEEEEEC-CCCCEEEEEeCCC---EEEEEe-
Confidence 111 1122444444 3 488888888 577777666543322 2223222 2333333333332 355556
Q ss_pred CCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEee
Q 003001 210 MNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~ 254 (859)
.+|+.+...... ...+. .+.+- ++..++.... .+.+.+-++.
T Consensus 414 ~~~~~~~~~~~~-~~~v~-~~~~s~d~~~l~~~~~-d~~v~~w~~~ 456 (577)
T 2ymu_A 414 RNGQLLQTLTGH-SSSVW-GVAFSPDDQTIASASD-DKTVKLWNRN 456 (577)
T ss_dssp TTCCEEEEEECC-SSCEE-EEEECTTSSEEEEEET-TSEEEEEETT
T ss_pred CCCCEEEEecCC-CCCeE-EEEECCCCCEEEEEcC-CCEEEEEECC
Confidence 467665544211 11111 11111 3345555543 4677766653
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=90.29 E-value=3.7 Score=45.09 Aligned_cols=187 Identities=7% Similarity=-0.153 Sum_probs=103.0
Q ss_pred CCCEEEEEeCC-C----EEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc----------CCCeEEEEeCCCC
Q 003001 52 GRKRVVVSTEE-N----VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNLPDG 116 (859)
Q Consensus 52 ~~~~Vyvat~~-g----~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~----------~g~~v~Ald~~tG 116 (859)
...++||..+. + .|..||++|++++=+...+... ++...-++..++|+. .++.|..||+.++
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P---~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~ 106 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC---ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 35789999875 3 8899999999999887776542 332233455666654 2468999999999
Q ss_pred cEeEEEeccCccccCCcccccccccccCC-CeEEEEe---CCEEEE--EEcCCCcEEEEEeccCcceeeeeEEEeecCCe
Q 003001 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKD-SLILVSS---KGCLHA--VSSIDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (859)
Q Consensus 117 ~llW~~~~~~~~ls~~~~~~~~~~~~~~~-~~VvV~~---~g~l~a--ld~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~ 190 (859)
++..+..+..+.- ......|.+.....+ +.+||.. +..+.. +|..+ +-+.+.+.. . .+. ..+..
T Consensus 107 ~vv~~I~v~~~~~-~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~---~~~--p~g~~ 176 (368)
T 1mda_H 107 LPIADIELPDAPR-FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-F---HIH--PGAAA 176 (368)
T ss_dssp CEEEEEEETTSCS-CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-C---CCE--EEETT
T ss_pred CEEEEEECCCccc-cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-e---EEc--cCCCe
Confidence 9999998752110 000000000112223 4677753 456777 88877 334433221 1 111 23444
Q ss_pred EEEEEecCCceeEEEEEEcCC-----CceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 191 IYVVGYAGSSQFHAYQINAMN-----GELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 191 vyvv~~~g~~~~~v~ald~~t-----G~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.|+ +..+. .++..+|..+ |+..|..+...+-+. .+...-.++.+++.+. +.++++++.++.
T Consensus 177 ~~~-~~~~d--g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~-~P~~~~~~~~~~~vs~--~~V~viD~~~~~ 242 (368)
T 1mda_H 177 THY-LGSCP--ASLAASDLAAAPAAAGIVGAQCTGAQNCSS-QAAQANYPGMLVWAVA--SSILQGDIPAAG 242 (368)
T ss_dssp EEE-CCCCT--TSCEEEECCSSCCCCEECCCCSCTTSCBCS-CCEEETTTTEEEECBS--SCCEEEECCSSC
T ss_pred EEE-EEcCC--CCEEEEECccccccCCeEEEEeeeeeeCCC-CccccccCCEEEEEcC--CEEEEEECCCCc
Confidence 554 22221 1366688887 877774320001000 0111223344555554 788889887643
No 231
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=90.11 E-value=33 Score=39.92 Aligned_cols=155 Identities=10% Similarity=0.073 Sum_probs=78.8
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcCCCeEEEEeCCC-----CcEeEEEeccCc
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPD-----GQMVWESFLRGS 127 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~t-----G~llW~~~~~~~ 127 (859)
+.++++. ++.+..+|..+|+..-. ......+..+.. +.|+.+++ +. ++.|+.||..+ |+..-.......
T Consensus 93 ~~~~~~~-~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~SpdG~~la~-~~-~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 93 GLVVLFT-QGGLVGFDMLARKVTYL--FDTNEETASLDFSPVGDRVAY-VR-NHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp TEEEEEE-TTEEEEEETTTTEEEEE--ECCTTCCTTCEECTTSSEEEE-EE-TTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred CeEEEEE-CCEEEEEECCCCceEEc--cCCcccccCCcCCCCCCEEEE-EE-CCeEEEEecCcccccCCCcEEeccCCCC
Confidence 5555554 48999999999976432 222212222211 24555555 33 46899999998 876532222111
Q ss_pred cccCCccc------ccccccccCCCeEEE-Ee----------------------------------CCEEEEEEcCCCcE
Q 003001 128 KHSKPLLL------VPTNLKVDKDSLILV-SS----------------------------------KGCLHAVSSIDGEI 166 (859)
Q Consensus 128 ~ls~~~~~------~~~~~~~~~~~~VvV-~~----------------------------------~g~l~ald~~tG~~ 166 (859)
....+.+. .........++..++ .. +..|+.+|.++|+.
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 00000000 000001222443333 22 25788889888887
Q ss_pred EEEEeccCcceeeeeEEEeecCCeEEEEEecC-CceeEEEEEEcCCCc
Q 003001 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAG-SSQFHAYQINAMNGE 213 (859)
Q Consensus 167 ~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g-~~~~~v~ald~~tG~ 213 (859)
.+..........+..+..+..+..+++.+..+ .....+..+|+.+|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~ 295 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc
Confidence 65543211111123333334555576655543 234578899999994
No 232
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=90.11 E-value=20 Score=37.32 Aligned_cols=150 Identities=12% Similarity=0.083 Sum_probs=76.5
Q ss_pred CCEEEEEeCC---CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCc-EeEEEeccCc
Q 003001 53 RKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQ-MVWESFLRGS 127 (859)
Q Consensus 53 ~~~Vyvat~~---g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~-llW~~~~~~~ 127 (859)
++++|+++.. ..|..+|+.+|++.....+.......+.. ...++.++++. ..+.|+.+|..+|+ .+|.......
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~-~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCccc-ccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence 5679998743 36899999999875444443221112331 12233445443 35689999988774 3443321100
Q ss_pred --cccCCcccccccccccCCCeEEEEe--CCEEEEEEcCC-CcE----EEEEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 128 --KHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSID-GEI----LWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 128 --~ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~t-G~~----~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
...... ..+.....+ ++.+|+.. +++|++++... |+. .|.. .. .|..+. ...++.+|+....+
T Consensus 161 ~~~~~~~~-~~pngis~d-g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~----~P~gi~-vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 161 RSNSESVF-PAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QT----NIDDFA-FDVEGNLYGATHIY 232 (306)
T ss_dssp CSSTTCCS-CSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SC----CCSSEE-EBTTCCEEEECBTT
T ss_pred cccccCCC-CcCCCcCcC-CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cC----CCCCeE-ECCCCCEEEEeCCC
Confidence 000000 011111112 34677753 78899998764 542 2211 11 122232 23567788755443
Q ss_pred CceeEEEEEEcCCCcee
Q 003001 199 SSQFHAYQINAMNGELL 215 (859)
Q Consensus 199 ~~~~~v~ald~~tG~~~ 215 (859)
+ +|..+|+. |+..
T Consensus 233 ~---~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 233 N---SVVRIAPD-RSTT 245 (306)
T ss_dssp C---CEEEECTT-CCEE
T ss_pred C---eEEEECCC-CCEE
Confidence 3 47888874 8763
No 233
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=89.78 E-value=19 Score=37.55 Aligned_cols=171 Identities=11% Similarity=0.075 Sum_probs=88.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEE-cCCCcceeeee-eeecCEEEEEEcCC----C-------eEEEEeCCCCcEe
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHV-LGINDVVDGID-IALGKYVITLSSDG----S-------TLRAWNLPDGQMV 119 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~-l~~~~~i~~l~-~~~~~~~V~Vs~~g----~-------~v~Ald~~tG~ll 119 (859)
.+.||+....+ +.++|+.+++ |+.. ++.+..-.... +..++.++++||.. + .+..+|+.++ .
T Consensus 15 ~~~i~~~GG~~-~~~yd~~~~~--W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~ 89 (318)
T 2woz_A 15 KDLILLVNDTA-AVAYDPMENE--CYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS--E 89 (318)
T ss_dssp EEEEEEECSSE-EEEEETTTTE--EEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT--E
T ss_pred cchhhhccccc-eEEECCCCCc--eecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC--c
Confidence 34677776654 8999999986 8772 11111111111 23466677777721 1 2788888766 4
Q ss_pred EEEeccCccccCCcccccccccccCCCeEEEEe--C-------CEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCC
Q 003001 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K-------GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESD 189 (859)
Q Consensus 120 W~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~-------g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~ 189 (859)
|+.-..-+. +..... ....++.+++++ + ..+.++|..++ .|+.-.+.+.- ....+ ...++
T Consensus 90 W~~~~~~p~-----~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~--~~~~~ 159 (318)
T 2woz_A 90 WVGLPPLPS-----ARCLFG-LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGHNV--ISHNG 159 (318)
T ss_dssp EEECSCBSS-----CBCSCE-EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEESCEE--EEETT
T ss_pred EEECCCCCc-----cccccc-eEEECCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCcccccEE--EEECC
Confidence 765422111 111111 112256777753 1 35888888776 58764332211 01112 23678
Q ss_pred eEEEEEecC---CceeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEE
Q 003001 190 QIYVVGYAG---SSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVT 240 (859)
Q Consensus 190 ~vyvv~~~g---~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~ 240 (859)
.+|++|-.. ...-.+..+|+.++ .|+..-..|..... .+.+.++.+++.
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~ 212 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIHKGKIVIA 212 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEECCEEEEE
Confidence 899876431 11124888999886 48775444443333 233334444443
No 234
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=89.76 E-value=9.3 Score=45.15 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=79.8
Q ss_pred cCCCEEEEEeC-----CCEEEEEECCC------CccceEEEcCCCcceeeeeeeecCEEEEEEcCC---CeEEEEeCCCC
Q 003001 51 TGRKRVVVSTE-----ENVIASLDLRH------GEIFWRHVLGINDVVDGIDIALGKYVITLSSDG---STLRAWNLPDG 116 (859)
Q Consensus 51 ~~~~~Vyvat~-----~g~l~ALd~~t------G~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g---~~v~Ald~~tG 116 (859)
.+++.|++.+. .+.|+.+|..+ |+..|+..............+.++.+++.+..+ ..|+.||..+|
T Consensus 242 pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 242 DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 34555666553 57899999988 766677765544322222123456666665533 47999999888
Q ss_pred cE-eEEEeccCccccCCcccccccccccCCCeEEEE--eCC--EEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeE
Q 003001 117 QM-VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKG--CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQI 191 (859)
Q Consensus 117 ~l-lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g--~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~v 191 (859)
.. .|+.-...... .....+ ....++.+++. .+| +|+.+|..+|+.+-+...+... ...+.....++.+
T Consensus 322 ~~~~~~~l~~~~~~-~~~~~~----~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~--v~~~~~s~d~~~l 394 (710)
T 2xdw_A 322 EESKWKVLVPEHEK-DVLEWV----ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS--VVGYSGQKKDTEI 394 (710)
T ss_dssp CGGGCEEEECCCSS-CEEEEE----EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE--EEEEECCTTCSEE
T ss_pred CcccceeccCCCCC-CeEEEE----EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce--EEEEecCCCCCEE
Confidence 64 57654432110 001111 11113444443 355 5778887788765555443211 1112111123344
Q ss_pred EEEEecCCceeEEEEEEcCCCc
Q 003001 192 YVVGYAGSSQFHAYQINAMNGE 213 (859)
Q Consensus 192 yvv~~~g~~~~~v~ald~~tG~ 213 (859)
++.......-..++.+|+.+|+
T Consensus 395 ~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 395 FYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEeCCCCCCEEEEEECCCCc
Confidence 4332222122357777777776
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=89.52 E-value=21 Score=36.86 Aligned_cols=146 Identities=9% Similarity=0.076 Sum_probs=73.1
Q ss_pred CCEE-EEEeCCCEEEEEECCCCcc-ceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCc-c
Q 003001 53 RKRV-VVSTEENVIASLDLRHGEI-FWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGS-K 128 (859)
Q Consensus 53 ~~~V-yvat~~g~l~ALd~~tG~i-lWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~-~ 128 (859)
++.+ ++.+..+.|..+|+ +|+. .|+. . .....++. ...++.++++. .++.|..||.. |+...-...... .
T Consensus 56 g~~l~~~d~~~~~i~~~~~-~g~~~~~~~--~-~~~~~gl~-~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~ 129 (305)
T 3dr2_A 56 QRTLVWSDLVGRRVLGWRE-DGTVDVLLD--A-TAFTNGNA-VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKR 129 (305)
T ss_dssp GTEEEEEETTTTEEEEEET-TSCEEEEEE--S-CSCEEEEE-ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEE
T ss_pred CCEEEEEECCCCEEEEEeC-CCCEEEEeC--C-CCccceee-ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCc
Confidence 4444 55556789999998 6652 2332 1 11223442 22233344444 34689999985 875443221111 1
Q ss_pred ccCCcccccccccccCCCeEEEEe-------------------CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCC
Q 003001 129 HSKPLLLVPTNLKVDKDSLILVSS-------------------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESD 189 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~~~~VvV~~-------------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~ 189 (859)
. ..+.....+.++.+++.. .+.|+++|.++|+..-...... +..+..+..+.
T Consensus 130 ~-----~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~----p~gl~~spdg~ 200 (305)
T 3dr2_A 130 L-----NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDH----PNGLAFSPDEQ 200 (305)
T ss_dssp C-----SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESS----EEEEEECTTSS
T ss_pred c-----CCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCC----CcceEEcCCCC
Confidence 0 000011334467777731 3679999998887542222211 22233233455
Q ss_pred eEEEEEecCC--ceeEEEEEEcCCCc
Q 003001 190 QIYVVGYAGS--SQFHAYQINAMNGE 213 (859)
Q Consensus 190 ~vyvv~~~g~--~~~~v~ald~~tG~ 213 (859)
.+|+...... ....+..+|..++.
T Consensus 201 ~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 201 TLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp EEEEEECCC---CCCEEEEEEEETTE
T ss_pred EEEEEecCCcCCCCCEEEEEEecCCC
Confidence 6887654310 00146777776554
No 236
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=89.27 E-value=25 Score=37.34 Aligned_cols=192 Identities=9% Similarity=0.041 Sum_probs=90.5
Q ss_pred EEEEEeCC--CEEE--EEECCCCccc-eEE-EcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCC-CCcEeEEEeccCc
Q 003001 55 RVVVSTEE--NVIA--SLDLRHGEIF-WRH-VLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRGS 127 (859)
Q Consensus 55 ~Vyvat~~--g~l~--ALd~~tG~il-WR~-~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~-tG~llW~~~~~~~ 127 (859)
.+||++.. +-|+ .+|+++|++. +.. ..........+....++..+++++.+ .++.||.. +|++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 47888753 3344 5678899764 222 11211122233222244455555555 89999987 8988654332211
Q ss_pred cccCCcccccccccccCCCe-EEE--E--------------eCCEEEEEEcC-CCcEEEEEec-c-CcceeeeeEEEeec
Q 003001 128 KHSKPLLLVPTNLKVDKDSL-ILV--S--------------SKGCLHAVSSI-DGEILWTRDF-A-AESVEVQQVIQLDE 187 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~~~~-VvV--~--------------~~g~l~ald~~-tG~~~W~~~~-~-~~~~~~~~~v~~~~ 187 (859)
. ....+ ....++. +++ . .+|.+..++.. +|+..=.... . .....+..+..+..
T Consensus 83 g---~~~~~----~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 83 G---HPRAN----DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp S---SGGGG----CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred C---CCccE----EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence 0 00111 2233454 232 2 35677777765 5765322211 0 00111223332334
Q ss_pred CCeEEEEEecCCceeEEEEEEcC-CCceeeeeeeecccCccC-ceEEe--cCcEEEEEECCCCeEEEEEee--cCe
Q 003001 188 SDQIYVVGYAGSSQFHAYQINAM-NGELLNHETAAFSGGFVG-DVALV--SSDTLVTLDTTRSILVTVSFK--NRK 257 (859)
Q Consensus 188 ~~~vyvv~~~g~~~~~v~ald~~-tG~~~w~~~v~~~~~~s~-~~~~v--~~~~lv~~d~~~~~l~v~~L~--sg~ 257 (859)
+..+|+.. .+.. .+..+|.. +|+......+..+..-.+ ..+.. .+..+++.+...+.+.+.++. +|+
T Consensus 156 G~~l~~~~-~~~~--~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~ 228 (365)
T 1jof_A 156 ETYLYSAD-LTAN--KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM 228 (365)
T ss_dssp SSEEEEEE-TTTT--EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCEEEEEc-CCCC--EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence 44566543 3332 46667776 887643222322210111 11222 334666666555777777665 455
No 237
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=89.27 E-value=24 Score=37.14 Aligned_cols=68 Identities=7% Similarity=0.102 Sum_probs=42.3
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcE
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM 118 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~l 118 (859)
++++.+++++.++.+.-.|..+++......+... ..+..+....++..++.++.++.++.||..++..
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 3567788899999988888877765444445432 2333332222334444455567999999988753
No 238
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=89.00 E-value=25 Score=36.90 Aligned_cols=147 Identities=13% Similarity=0.067 Sum_probs=74.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcC-C-Ccceeeeeee-ec---------CEEEEEEcCCCeEEEEeCCCCcEe
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLG-I-NDVVDGIDIA-LG---------KYVITLSSDGSTLRAWNLPDGQMV 119 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~-~-~~~i~~l~~~-~~---------~~~V~Vs~~g~~v~Ald~~tG~ll 119 (859)
++..+++++.+|.|.-.|.. |+........ . ...+..+... .+ ...++.++.++.|+.|| .++...
T Consensus 129 ~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~ 206 (343)
T 2xzm_R 129 DNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIR 206 (343)
T ss_dssp STTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEE
T ss_pred CCCEEEEEcCCCEEEEEecc-CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCcee
Confidence 46678888999999999876 3322221110 1 1112111110 11 12344455577999999 567777
Q ss_pred EEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcC-CCcEEEEEeccCcceeeeeEEEeecCCeEEEEEe
Q 003001 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSI-DGEILWTRDFAAESVEVQQVIQLDESDQIYVVGY 196 (859)
Q Consensus 120 W~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~ 196 (859)
.......... ..+ ....++..++ . .||.+...|.. .+.+.-....... ...+... .++.+.+++.
T Consensus 207 ~~~~~h~~~v----~~~----~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~---v~~v~~s-p~~~~la~~~ 274 (343)
T 2xzm_R 207 YTFKAHESNV----NHL----SISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGST---INQIAFN-PKLQWVAVGT 274 (343)
T ss_dssp EEEECCSSCE----EEE----EECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSC---EEEEEEC-SSSCEEEEEE
T ss_pred EEEcCccccc----eEE----EECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCc---EEEEEEC-CCCCEEEEEC
Confidence 6665443322 111 1122454444 3 38889888873 4444433322211 2223222 2334444555
Q ss_pred cCCceeEEEEEEcCCCceee
Q 003001 197 AGSSQFHAYQINAMNGELLN 216 (859)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~w 216 (859)
+++ +..+|..+++...
T Consensus 275 d~~----v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 275 DQG----VKIFNLMTQSKAP 290 (343)
T ss_dssp SSC----EEEEESSSCCSCS
T ss_pred CCC----EEEEEeCCCCCCc
Confidence 543 6667887776543
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=88.83 E-value=20 Score=41.74 Aligned_cols=182 Identities=6% Similarity=0.039 Sum_probs=97.3
Q ss_pred CCCEEEEEeC-CCEEEEEECCCCccceEEEcCCCcceeeeeee--ecCEEEEEEc------------------CCCeEEE
Q 003001 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIA--LGKYVITLSS------------------DGSTLRA 110 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~--~~~~~V~Vs~------------------~g~~v~A 110 (859)
+++.+|+... ++.|+.+|+++.+...-..++......++++. -+.+.|++++ ..+.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 4567999765 46899999999998886667654334455331 2344556663 2358999
Q ss_pred EeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe-C-CEEEEEEcCCCc-EEEEEeccCcceeeeeEEEeec
Q 003001 111 WNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-K-GCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDE 187 (859)
Q Consensus 111 ld~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~-~-g~l~ald~~tG~-~~W~~~~~~~~~~~~~~v~~~~ 187 (859)
+|.++.++.|+..+.+... ...+. .+ ++.+|+.+ + ....-++..+-+ .-|-.-...+.. +.. ...
T Consensus 180 ID~~t~~v~~qI~Vgg~pd---~~~~s----pd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~--~~~--v~~ 247 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLD---NCDAD----YE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI--EKA--IAA 247 (595)
T ss_dssp EETTTTEEEEEEEESSCCC---CEEEC----SS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH--HHH--HHH
T ss_pred EECCCCeEEEEEEeCCCcc---ceEEC----CC-CCEEEEEecCcccCcchhhccccccceEEEeeccce--eEe--ccC
Confidence 9999999999999855321 11111 11 23444432 1 111111111110 111111100000 000 123
Q ss_pred CCeEEEEEecCCceeEEEEEEcCC--Cce-eeeeeeecccCccCceEEe-cCcEEEEEECCCCeEEEEEeecC
Q 003001 188 SDQIYVVGYAGSSQFHAYQINAMN--GEL-LNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNR 256 (859)
Q Consensus 188 ~~~vyvv~~~g~~~~~v~ald~~t--G~~-~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~sg 256 (859)
+...|+ ++ |..+|.++ |+. +....+ +....+ +.+. ++.++++.+...+.+.++++.+.
T Consensus 248 Gk~~~i----~~----V~VID~~~~~~~~~~~~Ipv--g~~PhG-v~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 248 GDYQEL----NG----VKVVDGRKEASSLFTRYIPI--ANNPHG-CNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp TCSEEE----TT----EEEEECSGGGCCSSEEEEEE--ESSCCC-EEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred CCeeEE----Cc----EEEEeCcccCCceeEEEEec--CCCceE-EEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 444553 33 88899998 665 444433 222222 2222 45567777777788999998864
No 240
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=88.65 E-value=15 Score=42.58 Aligned_cols=123 Identities=10% Similarity=0.043 Sum_probs=68.4
Q ss_pred CEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc---cccC---------C-------------cc--c-cccc-ccccCCC
Q 003001 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGS---KHSK---------P-------------LL--L-VPTN-LKVDKDS 146 (859)
Q Consensus 96 ~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~---~ls~---------~-------------~~--~-~~~~-~~~~~~~ 146 (859)
++-+++|+....|...|. +|+++|...-... .++. + .. . .+.+ .....++
T Consensus 366 dd~~liSsR~~~I~~Id~-tG~V~W~LGg~~~w~~d~~~~~l~Pvd~~G~~~~~~~~~~~~~~~F~~~~gQH~a~~~~~g 444 (571)
T 3elq_A 366 DDSIILSSRHQGVVKIGR-DKQVKWILAPSKGWEKPLASKLLKPVDANGKPITCNENGLCENSDFDFTYTQHTAWISSKG 444 (571)
T ss_dssp TTEEEEEETTTEEEEEET-TSCEEEEESCSTTCCTTGGGGBCEEBCTTSCBCCBCTTSCBSSSSCCCCSSCEEEEECTTS
T ss_pred CCEEEEECCccEEEEEcC-CCcEEEEECCCCCCchhhhhhccccccccCcccccccccccccCCCccccCCcCeEEcCCC
Confidence 445666765448999997 9999999865432 1100 0 00 0 0000 0111235
Q ss_pred eEEEEeC------------------CEEEEEEcCCC--cEEEEEeccCc------ceeeeeEEEeecCCeEEEEEec---
Q 003001 147 LILVSSK------------------GCLHAVSSIDG--EILWTRDFAAE------SVEVQQVIQLDESDQIYVVGYA--- 197 (859)
Q Consensus 147 ~VvV~~~------------------g~l~ald~~tG--~~~W~~~~~~~------~~~~~~~v~~~~~~~vyvv~~~--- 197 (859)
.+.++.+ +..+.+|..+. +++|++....+ ...-.|.. ..++.+..-+..
T Consensus 445 ~i~vFDNg~~~~~~~p~~~~~~~SR~l~y~ID~~~~Tv~~vw~y~~~~g~~~yS~~~gs~Q~L--~nGN~li~~g~~~~~ 522 (571)
T 3elq_A 445 TLTIFDNGDGRHLEQPALPTMKYSRFVEYKIDEKKGTVQQVWEYGKERGYDFYSPITSIIEYQ--ADRNTMFGFGGSIHL 522 (571)
T ss_dssp CEEEEECCTTGGGSCCSSGGGCCCEEEEEEEETTTTEEEEEEEECGGGGGGGCCSSCCEEEEE--TTTTEEEEEEEEETT
T ss_pred eEEEEeCCCCCCCCcccCCCCCCceEEEEEEcCCCCEEEEEEEecCCCCCCcccccccccEEC--CCCCEEEEecccccc
Confidence 6666642 22366999877 89999964311 11112221 344555543331
Q ss_pred --CCc--eeEEEEEEcCCCceeeeeeee
Q 003001 198 --GSS--QFHAYQINAMNGELLNHETAA 221 (859)
Q Consensus 198 --g~~--~~~v~ald~~tG~~~w~~~v~ 221 (859)
.+. ..++..++..+++++|+..+.
T Consensus 523 ~~~g~~~~~~i~E~~~~~~evv~e~~~~ 550 (571)
T 3elq_A 523 FDVGQPTVGKLNEIDYKTKEVKVEIDVL 550 (571)
T ss_dssp TSTTSEEEEEEEEEETTTCCEEEEEEEE
T ss_pred cccCCCCceeEEEECCCCCEEEEEEEec
Confidence 111 467899999888999998764
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=88.42 E-value=24 Score=36.82 Aligned_cols=145 Identities=9% Similarity=-0.009 Sum_probs=76.9
Q ss_pred CEEEEEeCCCEEEEEECCCCcc-ceEEEcCC-----------------Ccceeeeeeee-cCEEEEEEcCCCeEEEEeCC
Q 003001 54 KRVVVSTEENVIASLDLRHGEI-FWRHVLGI-----------------NDVVDGIDIAL-GKYVITLSSDGSTLRAWNLP 114 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~i-lWR~~l~~-----------------~~~i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~ 114 (859)
..+|+.+..+.|..+|+++|+. .|...-.. .....++. .. .++.++|+..++.++.+|+.
T Consensus 31 ~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~-~~~~~g~l~v~d~~~~i~~~d~~ 109 (322)
T 2fp8_A 31 KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDIS-YNLQNNQLYIVDCYYHLSVVGSE 109 (322)
T ss_dssp SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE-EETTTTEEEEEETTTEEEEECTT
T ss_pred CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEE-EcCCCCcEEEEECCCCEEEEeCC
Confidence 3499999999999999988754 34331100 00122342 23 24556656444569999988
Q ss_pred CCcEeEEEecc-CccccCCcccccccccccC-CCeEEEEe-------------------CCEEEEEEcCCCcEEEEE-ec
Q 003001 115 DGQMVWESFLR-GSKHSKPLLLVPTNLKVDK-DSLILVSS-------------------KGCLHAVSSIDGEILWTR-DF 172 (859)
Q Consensus 115 tG~llW~~~~~-~~~ls~~~~~~~~~~~~~~-~~~VvV~~-------------------~g~l~ald~~tG~~~W~~-~~ 172 (859)
+|+...-.... ...+ ..+....++. ++.+++.. +|.|+++|..+|+..-.. ..
T Consensus 110 ~g~~~~~~~~~~~~~~-----~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~ 184 (322)
T 2fp8_A 110 GGHATQLATSVDGVPF-----KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 184 (322)
T ss_dssp CEECEEEESEETTEEC-----SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEecccCCCCcc-----cccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC
Confidence 77643222111 1111 0111124455 57788753 268999999888754221 11
Q ss_pred cCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
.. +..+.....++.+|+.....+ ++..++..+
T Consensus 185 ~~----p~gia~~~dg~~lyv~d~~~~---~I~~~~~~~ 216 (322)
T 2fp8_A 185 HV----PGGAEVSADSSFVLVAEFLSH---QIVKYWLEG 216 (322)
T ss_dssp SC----CCEEEECTTSSEEEEEEGGGT---EEEEEESSS
T ss_pred cc----CcceEECCCCCEEEEEeCCCC---eEEEEECCC
Confidence 11 222321223345887544332 588888765
No 242
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=88.28 E-value=4.1 Score=43.19 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=32.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCc-cceEEEcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcE
Q 003001 52 GRKRVVVSTEENVIASLDLRHGE-IFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM 118 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~-ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~l 118 (859)
+++.+++++.+|.|...|.++|+ ..=...+... ..+..+....++..++.++.++.++.||..+++.
T Consensus 66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 45678999999999999999987 1112222211 2233332122334444455567999999999874
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=86.70 E-value=33 Score=36.23 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=46.7
Q ss_pred CCEEEEEeC------CCEEEEEECCCCccceEEEcCCCc-----ceeeeeeeecCEEEEEEc----CCCeEEEEeCCCCc
Q 003001 53 RKRVVVSTE------ENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGKYVITLSS----DGSTLRAWNLPDGQ 117 (859)
Q Consensus 53 ~~~Vyvat~------~g~l~ALd~~tG~ilWR~~l~~~~-----~i~~l~~~~~~~~V~Vs~----~g~~v~Ald~~tG~ 117 (859)
++++|+++. .+.|..+|+++|+++-+..++... ....+.....++.++++. ..+.|+.||..+|+
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 578999874 479999999999987777765321 112332221345666653 34689999999897
Q ss_pred EeEEEe
Q 003001 118 MVWESF 123 (859)
Q Consensus 118 llW~~~ 123 (859)
. |+..
T Consensus 157 ~-~r~~ 161 (343)
T 2qe8_A 157 A-ARVL 161 (343)
T ss_dssp E-EEEC
T ss_pred E-EEEe
Confidence 5 6653
No 244
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=86.50 E-value=32 Score=35.38 Aligned_cols=194 Identities=12% Similarity=0.059 Sum_probs=104.7
Q ss_pred CCCEEEEEeC------CCEEEEEECCCCccceEEEcCCCccee-eeeeeecCEEEEEEcCC-----CeEEEEeCCCCcEe
Q 003001 52 GRKRVVVSTE------ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQMV 119 (859)
Q Consensus 52 ~~~~Vyvat~------~g~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~~~~~V~Vs~~g-----~~v~Ald~~tG~ll 119 (859)
.++.||+... .+.+..+|+.+++ |+..-+.+..-. ......++.+++++|.+ ..+..||..+++
T Consensus 60 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-- 135 (302)
T 2xn4_A 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE-- 135 (302)
T ss_dssp ETTEEEEESCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE--
T ss_pred ECCEEEEEeCcCCCccccceEEECCCCCc--eeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe--
Confidence 3778888754 2468999998875 998754332111 11123577777777632 358889988764
Q ss_pred EEEeccCccccCCcccccccccccCCCeEEEEe---------CCEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCC
Q 003001 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS---------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESD 189 (859)
Q Consensus 120 W~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~---------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~ 189 (859)
|+.-...+.- ..... ....++.+++++ -..+..+|..++ .|+.-.+.+.- ....+ ...++
T Consensus 136 W~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~--~~~~~ 205 (302)
T 2xn4_A 136 WFHVAPMNTR-----RSSVG-VGVVGGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGV--GVLNN 205 (302)
T ss_dssp EEEECCCSSC-----CBSCE-EEEETTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEE--EEETT
T ss_pred EeecCCCCCc-----ccCce-EEEECCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccE--EEECC
Confidence 8765322211 11111 112256777753 134888888776 57764332211 01112 23578
Q ss_pred eEEEEEecCC--ceeEEEEEEcCCCceeeeeeeecccCccC-ceEEecCcEEEEEECC----CCeEEEEEeecCeeeEEE
Q 003001 190 QIYVVGYAGS--SQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTT----RSILVTVSFKNRKIAFQE 262 (859)
Q Consensus 190 ~vyvv~~~g~--~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~~----~~~l~v~~L~sg~~~~~~ 262 (859)
.+|++|-..+ ..-.+..+|+.++ .|+..-..|..... .+...++.++++.-.+ ...+.+.++.+++ ...
T Consensus 206 ~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 206 LLYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp EEEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred EEEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 8998864321 1124888999876 47764444433333 2333344444443211 1346777777765 554
Q ss_pred E
Q 003001 263 T 263 (859)
Q Consensus 263 ~ 263 (859)
+
T Consensus 282 ~ 282 (302)
T 2xn4_A 282 V 282 (302)
T ss_dssp C
T ss_pred C
Confidence 3
No 245
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=86.49 E-value=3.4 Score=48.73 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=60.3
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcc----eeeeeee-ecCEEEEEEcC--------CCeEEEEeCCCCcEe
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDV----VDGIDIA-LGKYVITLSSD--------GSTLRAWNLPDGQMV 119 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~----i~~l~~~-~~~~~V~Vs~~--------g~~v~Ald~~tG~ll 119 (859)
++.++..+.+|.|...|.++|+. ++.+..... +..+... .|+.+++.+.. ++.++.||..+|+.+
T Consensus 26 dg~~~~~~~d~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~ 103 (719)
T 1z68_A 26 GQEYLHQSADNNIVLYNIETGQS--YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV 103 (719)
T ss_dssp SSEEEEECTTSCEEEEESSSCCE--EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CCeEEEEcCCCCEEEEEcCCCcE--EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc
Confidence 44666667789999999999985 333332211 2222222 34445554431 368999999999874
Q ss_pred EEEeccCccccCCcccccccccccCCCe-EEEEeCCEEEEEEcCCCcEE
Q 003001 120 WESFLRGSKHSKPLLLVPTNLKVDKDSL-ILVSSKGCLHAVSSIDGEIL 167 (859)
Q Consensus 120 W~~~~~~~~ls~~~~~~~~~~~~~~~~~-VvV~~~g~l~ald~~tG~~~ 167 (859)
....+.... ..... ..++. ++...++.|+..|..+|+..
T Consensus 104 ~~~~l~~~~--~~~~~-------SPDG~~la~~~~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 104 RGNELPRPI--QYLCW-------SPVGSKLAYVYQNNIYLKQRPGDPPF 143 (719)
T ss_dssp CSSCCCSSB--CCEEE-------CSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred cceecCccc--ccceE-------CCCCCEEEEEECCeEEEEeCCCCCcE
Confidence 322332221 11112 12443 33346889999999888754
No 246
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.40 E-value=58 Score=38.53 Aligned_cols=195 Identities=9% Similarity=0.015 Sum_probs=104.7
Q ss_pred CCCEEEEEeCC-----CEEEEEECCCCccceEEEc-C-----CCcc-eeeeeeee--cCEEEEEEcCC------CeEEEE
Q 003001 52 GRKRVVVSTEE-----NVIASLDLRHGEIFWRHVL-G-----INDV-VDGIDIAL--GKYVITLSSDG------STLRAW 111 (859)
Q Consensus 52 ~~~~Vyvat~~-----g~l~ALd~~tG~ilWR~~l-~-----~~~~-i~~l~~~~--~~~~V~Vs~~g------~~v~Al 111 (859)
.++.||+.... +.+..+|+.+++ |+..- + .+.. ........ ++.++++||.+ +.+..|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 46778887653 568999999885 99865 3 1110 11111245 66677776632 358888
Q ss_pred eCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe----CCEEEEEEcCCCcEEEEEeccCc-----ceeeeeE
Q 003001 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILWTRDFAAE-----SVEVQQV 182 (859)
Q Consensus 112 d~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~----~g~l~ald~~tG~~~W~~~~~~~-----~~~~~~~ 182 (859)
|..+. .|+.-..-+. +..........++.++|++ ++.+..+|..++ .|+.-.+.+ ......+
T Consensus 474 d~~t~--~W~~~~~~p~-----~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~a~ 544 (695)
T 2zwa_A 474 DMKTR--EWSMIKSLSH-----TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE--IFKDVTPKDEFFQNSLVSAGL 544 (695)
T ss_dssp ETTTT--EEEECCCCSB-----CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT--EEEECCCSSGGGGSCCBSCEE
T ss_pred eCCCC--cEEECCCCCC-----CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC--ceEEccCCCCCCCcccceeEE
Confidence 88776 5876532221 1111111121256777763 126999999886 488754321 1111112
Q ss_pred EEeecCCeEEEEEecC----CceeEEEEEEcCCCc----eeeeeeeecc-cCccC-ceEEec-CcEEEEEEC-------C
Q 003001 183 IQLDESDQIYVVGYAG----SSQFHAYQINAMNGE----LLNHETAAFS-GGFVG-DVALVS-SDTLVTLDT-------T 244 (859)
Q Consensus 183 v~~~~~~~vyvv~~~g----~~~~~v~ald~~tG~----~~w~~~v~~~-~~~s~-~~~~v~-~~~lv~~d~-------~ 244 (859)
+.....+.+|++|... ...-.+..+|+.+.+ ..|+.....| ....+ .+.+++ +.++++.-. .
T Consensus 545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~ 624 (695)
T 2zwa_A 545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDR 624 (695)
T ss_dssp EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCT
T ss_pred EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCC
Confidence 1111227899887542 112358889998887 3476643332 22222 334446 444443311 1
Q ss_pred CCeEEEEEeecCe
Q 003001 245 RSILVTVSFKNRK 257 (859)
Q Consensus 245 ~~~l~v~~L~sg~ 257 (859)
...+.+.++.+++
T Consensus 625 ~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 625 TNSIISLDPLSET 637 (695)
T ss_dssp TTSEEEEETTTTE
T ss_pred CCeEEEEECCCCe
Confidence 3457888887776
No 247
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=86.36 E-value=36 Score=35.91 Aligned_cols=159 Identities=8% Similarity=0.126 Sum_probs=88.2
Q ss_pred CCEEEEEeC--CCEEEEEECCCCccceEEEcCCC-cc-eeeeeeeecCEEEEEEcC-C---------CeEEEEeCCCCcE
Q 003001 53 RKRVVVSTE--ENVIASLDLRHGEIFWRHVLGIN-DV-VDGIDIALGKYVITLSSD-G---------STLRAWNLPDGQM 118 (859)
Q Consensus 53 ~~~Vyvat~--~g~l~ALd~~tG~ilWR~~l~~~-~~-i~~l~~~~~~~~V~Vs~~-g---------~~v~Ald~~tG~l 118 (859)
+++||+... .+.+..+|+.+..-.|+..-+.+ .. .....+..++.+++++|. . ..+..||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~- 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS- 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE-
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc-
Confidence 677888653 46899999987667899764433 11 111112456777777664 1 358999988764
Q ss_pred eEEEeccCccccCCcccccccccccCCCeEEEEeC-----------------------------------------CEEE
Q 003001 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-----------------------------------------GCLH 157 (859)
Q Consensus 119 lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~-----------------------------------------g~l~ 157 (859)
|+.-...+.. +..... .+..++.++++++ ..+.
T Consensus 98 -W~~~~~~~p~----~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (357)
T 2uvk_A 98 -WVKLMSHAPM----GMAGHV-TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171 (357)
T ss_dssp -EEECSCCCSS----CCSSEE-EEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred -EEECCCCCCc----ccccce-EEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence 8764332201 111111 1123577777642 5789
Q ss_pred EEEcCCCcEEEEEeccCcc--eeeeeEEEeecCCeEEEEEecCC---ceeEEEEEEcCCCceeeeeeeec
Q 003001 158 AVSSIDGEILWTRDFAAES--VEVQQVIQLDESDQIYVVGYAGS---SQFHAYQINAMNGELLNHETAAF 222 (859)
Q Consensus 158 ald~~tG~~~W~~~~~~~~--~~~~~~v~~~~~~~vyvv~~~g~---~~~~v~ald~~tG~~~w~~~v~~ 222 (859)
.+|..+. .|+.-.+.+. .....+ ...++.+|++|-... ....+..+|...-...|+..-..
T Consensus 172 ~yd~~~~--~W~~~~~~p~~~~~~~~~--~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~ 237 (357)
T 2uvk_A 172 SFDPSTQ--QWSYAGESPWYGTAGAAV--VNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV 237 (357)
T ss_dssp EEETTTT--EEEEEEECSSCCCBSCEE--EEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS
T ss_pred EEeCCCC--cEEECCCCCCCCcccccE--EEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC
Confidence 9998876 6876543221 110112 246788998763210 12246777764455568875333
No 248
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.71 E-value=13 Score=39.26 Aligned_cols=155 Identities=12% Similarity=0.003 Sum_probs=74.3
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeee-------------------eecCEEEEEE----cCCCe
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI-------------------ALGKYVITLS----SDGST 107 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-------------------~~~~~~V~Vs----~~g~~ 107 (859)
++++.|+.++.++.|+.+|..+|+..--...+......+-.. +.++.+++.. .....
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 456678788888899999999997643332222100000000 0111111111 23457
Q ss_pred EEEEeCCCCcEeEEEeccCccccCCcccccccccccC-CCe-EEEEeC-------CEEEEEEcCCCcEEEEEeccCccee
Q 003001 108 LRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDK-DSL-ILVSSK-------GCLHAVSSIDGEILWTRDFAAESVE 178 (859)
Q Consensus 108 v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~-~~~-VvV~~~-------g~l~ald~~tG~~~W~~~~~~~~~~ 178 (859)
|+.||..+|+...-........ .. .... ++. ++...+ ..|+.+|..+|+..--.. ..+...
T Consensus 170 l~~~d~~~g~~~~~~~~~~~~~-----~~----~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~ 239 (396)
T 3c5m_A 170 LIKVDIETGELEVIHQDTAWLG-----HP----IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGES 239 (396)
T ss_dssp EEEEETTTCCEEEEEEESSCEE-----EE----EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEE
T ss_pred EEEEECCCCcEEeeccCCcccc-----cc----eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCcc
Confidence 9999999998765443221110 00 1111 232 333221 467777776654321111 111111
Q ss_pred eeeEEEeecCCeEEEEEecC-CceeEEEEEEcCCCcee
Q 003001 179 VQQVIQLDESDQIYVVGYAG-SSQFHAYQINAMNGELL 215 (859)
Q Consensus 179 ~~~~v~~~~~~~vyvv~~~g-~~~~~v~ald~~tG~~~ 215 (859)
+..+..+..+..+++++..+ .....++.+|+.+|+..
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE 277 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE
Confidence 22232233455566555543 22234888999998764
No 249
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=85.65 E-value=30 Score=34.23 Aligned_cols=139 Identities=11% Similarity=-0.004 Sum_probs=70.9
Q ss_pred CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCC-CcEeEEEeccC-ccccCCcccccc
Q 003001 61 EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPD-GQMVWESFLRG-SKHSKPLLLVPT 138 (859)
Q Consensus 61 ~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~t-G~llW~~~~~~-~~ls~~~~~~~~ 138 (859)
.++.|..+|..+|++......+.. +..+....++..++.+. ++.|+.||..+ |+..-...... ... ...
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~--v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~----- 90 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPEL--FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICN-NDH----- 90 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSC--CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBC-SCC-----
T ss_pred cceeEEEEeCCCCceeeeccCCcc--eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccc-cce-----
Confidence 457899999999987754443322 33332222333444454 45899999999 87653222211 111 011
Q ss_pred cccccCCCe-EEEEe-----CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCC
Q 003001 139 NLKVDKDSL-ILVSS-----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (859)
Q Consensus 139 ~~~~~~~~~-VvV~~-----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG 212 (859)
....++. +++.. ...|+.++..+|+..-- ..... ...+..+..+..+++.+...+ ..+++.++..+|
T Consensus 91 --~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~---~~~~~~spdg~~l~~~~~~~~-~~~l~~~~~~~~ 163 (297)
T 2ojh_A 91 --GISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM-TKNLP---SYWHGWSPDGKSFTYCGIRDQ-VFDIYSMDIDSG 163 (297)
T ss_dssp --EECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC-CSSSS---EEEEEECTTSSEEEEEEEETT-EEEEEEEETTTC
T ss_pred --EECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe-ecCCC---ccceEECCCCCEEEEEECCCC-ceEEEEEECCCC
Confidence 1222443 33333 36788888777764221 11111 112222234444554443322 357888888877
Q ss_pred cee
Q 003001 213 ELL 215 (859)
Q Consensus 213 ~~~ 215 (859)
+..
T Consensus 164 ~~~ 166 (297)
T 2ojh_A 164 VET 166 (297)
T ss_dssp CEE
T ss_pred cce
Confidence 653
No 250
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=85.57 E-value=33 Score=35.98 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=77.6
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccC
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA 174 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~ 174 (859)
++.++++...++.|+.||..+|+.. .+....... .+ ..+.++.+++.....|+.+|..+|+..--.....
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~-----~i----~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKT-VHALPFMGS-----AL----AKISDSKQLIASDDGLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEE-----EE----EEEETTEEEEEETTEEEEEETTTCCEEEEECSST
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEECCCcce-----EE----EEeCCCeEEEEECCCEEEEECCCCcEEEEeeCCC
Confidence 3456666656679999999988754 222222111 11 2233677777766779999999998754333221
Q ss_pred --cceeeeeEEEeecCCeEEEEEecC---CceeEEEEEEcCCCceeeeeeeecccCccCceEEe-cCcEEEEEECCCCeE
Q 003001 175 --ESVEVQQVIQLDESDQIYVVGYAG---SSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSIL 248 (859)
Q Consensus 175 --~~~~~~~~v~~~~~~~vyvv~~~g---~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-~~~~lv~~d~~~~~l 248 (859)
+...+..+. ...++.+|+..... .....++.+| +|+...-.. .......+.+- .+..+++.+...+.+
T Consensus 130 ~~~~~~~~~i~-~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~---~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 130 DLPGNRSNDGR-MHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA---DISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp TCTTEEEEEEE-ECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE---EESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred CCCCCCCCCEE-ECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC---CCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 111122222 23456778755421 0124688888 676432111 10111111121 233566667666778
Q ss_pred EEEEee--cC
Q 003001 249 VTVSFK--NR 256 (859)
Q Consensus 249 ~v~~L~--sg 256 (859)
++.++. +|
T Consensus 204 ~~~d~~~~~G 213 (326)
T 2ghs_A 204 MRVPLDARTG 213 (326)
T ss_dssp EEEEBCTTTC
T ss_pred EEEEcccccC
Confidence 888875 55
No 251
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=85.36 E-value=23 Score=40.98 Aligned_cols=151 Identities=20% Similarity=0.201 Sum_probs=74.0
Q ss_pred cCCCEEEEEeCC----------CEEEEEECCC------CccceEEEc-CCCcceeeeee-eecCEEEEEEcCC-------
Q 003001 51 TGRKRVVVSTEE----------NVIASLDLRH------GEIFWRHVL-GINDVVDGIDI-ALGKYVITLSSDG------- 105 (859)
Q Consensus 51 ~~~~~Vyvat~~----------g~l~ALd~~t------G~ilWR~~l-~~~~~i~~l~~-~~~~~~V~Vs~~g------- 105 (859)
++++.|+.++++ ..|+.+|..+ |+. ++.. ........... +.|+.+++.+.++
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV--RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS--EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce--eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence 456777777665 5899999988 554 3333 22222222211 2345566655332
Q ss_pred CeEEEEeCC-CCcE--eEEEecc-CccccCCcccccccccccCCCeEEEEe--CC--EEEEEEcCCCcEEEEEeccCc--
Q 003001 106 STLRAWNLP-DGQM--VWESFLR-GSKHSKPLLLVPTNLKVDKDSLILVSS--KG--CLHAVSSIDGEILWTRDFAAE-- 175 (859)
Q Consensus 106 ~~v~Ald~~-tG~l--lW~~~~~-~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g--~l~ald~~tG~~~W~~~~~~~-- 175 (859)
..|+.||.. +|+. .-+.... .... ... ....++.+++.+ +| .|+.+|.++|+..-.......
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~-~~~-------~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAI-AQA-------EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCE-EEE-------EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceE-cce-------EECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 479999998 6832 1111111 1111 001 112245555443 45 888888877764311111100
Q ss_pred --cee--eeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCce
Q 003001 176 --SVE--VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (859)
Q Consensus 176 --~~~--~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~ 214 (859)
... ...+. ...++.+++.+..| ..++..+|..+|+.
T Consensus 289 ~p~w~~~~~~~~-~~~~~~~~~~~~~~--~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 289 GPLWTPGMRWFA-PLANGLIAVVHGKG--AAVLGILDPESGEL 328 (662)
T ss_dssp CCCCSTTCCSEE-ECTTSCEEEEEBSS--SCEEEEEETTTTEE
T ss_pred CccccccCceEe-EeCCCEEEEEEEcC--ccEEEEEECCCCcE
Confidence 000 11121 12345555555443 35788889888863
No 252
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=84.96 E-value=12 Score=43.24 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=56.5
Q ss_pred ccccccccEeEEEecc-----------CceeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCccee---
Q 003001 23 LYEDQVGLMDWHQQYI-----------GKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVD--- 88 (859)
Q Consensus 23 l~edq~G~~dW~~~~v-----------G~~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~--- 88 (859)
..=|..|...|..... |.+....|.+ ..++.+..+.. ..++-+|. +|+++|+..++......
T Consensus 178 ~i~D~~G~lrW~~~~~~~~~~~~~~~~~~g~l~~~~g--~~nG~l~~g~G-~~i~elD~-~Gkvv~~~~lp~g~~~~HHD 253 (571)
T 3elq_A 178 FIVDTEGEYRWWLDQDTFYDGRDRDINKRGYLMGIRE--TPRGTFTAVQG-QHWYEFDM-MGQVLEDHKLPRGFADATHE 253 (571)
T ss_dssp EEECTTSCEEEECCGGGTCCSSSCCGGGCSCCEEEEE--CTTSCEEEEEB-TEEEEECT-TCCEEEEEECCTTEECBCSC
T ss_pred EEEcCCCcEEEEeCcccccccceeeccCCCeEEEEEe--cCCCCEEEecC-cEEEEECC-CCcEEEEEECCCCccccccc
Confidence 4447789999997652 1111112222 12444444443 46999996 89999999987531000
Q ss_pred eeeeeecCEEEEEEc-------------CCCeEEEEeCCCCcEeEEEecc
Q 003001 89 GIDIALGKYVITLSS-------------DGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 89 ~l~~~~~~~~V~Vs~-------------~g~~v~Ald~~tG~llW~~~~~ 125 (859)
......|+-++.+.. -++.++-+| .+|+++|++...
T Consensus 254 ~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeVv~eW~~~ 302 (571)
T 3elq_A 254 SIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRVVDVWDLT 302 (571)
T ss_dssp EEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCEEEEEEHH
T ss_pred eEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCEEEEEEhH
Confidence 110112333332211 134788999 899999999864
No 253
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=84.70 E-value=17 Score=42.30 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=64.9
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCcc------ceEE-EcCCC---cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcE--
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEI------FWRH-VLGIN---DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM-- 118 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~i------lWR~-~l~~~---~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~l-- 118 (859)
++++.+++++++|.|.-.|.++|++ ..+. ..... ..+..++ ...++ ++.++.++.++.||..++..
T Consensus 139 PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa-wSPdg-Laass~D~tVrlWd~~~~~~~~ 216 (588)
T 2j04_A 139 PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV-WYEDV-LVAALSNNSVFSMTVSASSHQP 216 (588)
T ss_dssp SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE-EETTE-EEEEETTCCEEEECCCSSSSCC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE-EcCCc-EEEEeCCCeEEEEECCCCcccc
Confidence 4678899999999999999999864 2222 22221 1233331 23345 44466678999999988885
Q ss_pred eEEEe--ccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcE-EEEE
Q 003001 119 VWESF--LRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI-LWTR 170 (859)
Q Consensus 119 lW~~~--~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~-~W~~ 170 (859)
.|+.- .....+ ..+ ... ++.++..+++++...|..+|+. ....
T Consensus 217 ~~~tL~~~h~~~V----~sv----aFs-g~~LASa~~~tIkLWd~~~~~~~~~~~ 262 (588)
T 2j04_A 217 VSRMIQNASRRKI----TDL----KIV-DYKVVLTCPGYVHKIDLKNYSISSLKT 262 (588)
T ss_dssp CEEEEECCCSSCC----CCE----EEE-TTEEEEECSSEEEEEETTTTEEEEEEC
T ss_pred ceeeecccccCcE----EEE----EEE-CCEEEEEeCCeEEEEECCCCeEEEEEc
Confidence 34442 221111 111 112 3444445678888888888776 4443
No 254
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=84.68 E-value=43 Score=35.30 Aligned_cols=195 Identities=12% Similarity=0.068 Sum_probs=99.1
Q ss_pred CCCEEEEEeCC-----------CEEEEEECCCCccceEEEcCCC-cceeee-eeeecCEEEEEEcCC-------------
Q 003001 52 GRKRVVVSTEE-----------NVIASLDLRHGEIFWRHVLGIN-DVVDGI-DIALGKYVITLSSDG------------- 105 (859)
Q Consensus 52 ~~~~Vyvat~~-----------g~l~ALd~~tG~ilWR~~l~~~-~~i~~l-~~~~~~~~V~Vs~~g------------- 105 (859)
.+++||+.... +.+..+|+.+.+ |+..-+.. ..-.+. ....++.+++++|.+
T Consensus 64 ~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 141 (357)
T 2uvk_A 64 IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS--WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNE 141 (357)
T ss_dssp ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE--EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHH
T ss_pred ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc--EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhh
Confidence 36788886543 468999998874 99864433 111111 123567777777642
Q ss_pred --------------------------CeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEe-------
Q 003001 106 --------------------------STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS------- 152 (859)
Q Consensus 106 --------------------------~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~------- 152 (859)
..+..+|+.+. .|+.-...+.- . ..... ....++.+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~---~-~~~~~-~~~~~~~iyv~GG~~~~~~ 214 (357)
T 2uvk_A 142 AGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ--QWSYAGESPWY---G-TAGAA-VVNKGDKTWLINGEAKPGL 214 (357)
T ss_dssp HTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT--EEEEEEECSSC---C-CBSCE-EEEETTEEEEECCEEETTE
T ss_pred cCCcccchhhhhhhhccccccccCCcccEEEEeCCCC--cEEECCCCCCC---C-ccccc-EEEECCEEEEEeeecCCCc
Confidence 47999999876 68865332211 0 00001 112256777753
Q ss_pred -CCEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCCeEEEEEecCC-------------------ceeEEEEEEcCC
Q 003001 153 -KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGS-------------------SQFHAYQINAMN 211 (859)
Q Consensus 153 -~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~~vyvv~~~g~-------------------~~~~v~ald~~t 211 (859)
...+..+|...-...|+.-.+.+.- ......-...++.+|++|-... ....+..+|+.+
T Consensus 215 ~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~ 294 (357)
T 2uvk_A 215 RTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN 294 (357)
T ss_dssp ECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-
T ss_pred ccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC
Confidence 2357778764445578874332110 0011101246788998764210 012467789886
Q ss_pred CceeeeeeeecccCccC-ceEEecCcEEEEEECCC-----CeEEEEEeecCe
Q 003001 212 GELLNHETAAFSGGFVG-DVALVSSDTLVTLDTTR-----SILVTVSFKNRK 257 (859)
Q Consensus 212 G~~~w~~~v~~~~~~s~-~~~~v~~~~lv~~d~~~-----~~l~v~~L~sg~ 257 (859)
+ .|+..-..|..... .++..++.+++..=.+. ..+.++++.+++
T Consensus 295 ~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 295 G--KWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp ----CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred C--ceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 5 58775455544443 33334555555442111 135555666555
No 255
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=84.13 E-value=49 Score=38.84 Aligned_cols=63 Identities=8% Similarity=0.040 Sum_probs=36.9
Q ss_pred CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCce-eeee
Q 003001 154 GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL-LNHE 218 (859)
Q Consensus 154 g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~-~w~~ 218 (859)
..++.+|+++|...|+.-......... .+ ...++.+|+.+..++...+++.+|+.+|+. .|+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~-~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~ 322 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVS-LV-DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD 322 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEE-EE-EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEE-EE-eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE
Confidence 478888877775333321111111111 12 346788888776654456899999998875 3654
No 256
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=83.07 E-value=19 Score=41.97 Aligned_cols=109 Identities=5% Similarity=-0.046 Sum_probs=58.3
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcCCCc--ceeeeeee-ecCEEEEEEcC--------CCeEEEEeCCCCcEeEEE
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGIND--VVDGIDIA-LGKYVITLSSD--------GSTLRAWNLPDGQMVWES 122 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~--~i~~l~~~-~~~~~V~Vs~~--------g~~v~Ald~~tG~llW~~ 122 (859)
+.+++.+.+|.|...|+++|+..-...-.... .+..+... .|..+++.+.+ .+.++.||..+|+. .+.
T Consensus 28 g~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l 106 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSL 106 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EEC
T ss_pred CcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-Eec
Confidence 33334477889999999999875433221110 12223222 34445554432 26799999999986 222
Q ss_pred eccCccccCCcccccccccccCCC-eEEEEeCCEEEEEEcCCCcEEE
Q 003001 123 FLRGSKHSKPLLLVPTNLKVDKDS-LILVSSKGCLHAVSSIDGEILW 168 (859)
Q Consensus 123 ~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~~~g~l~ald~~tG~~~W 168 (859)
......- .....+ ....++ .++...++.|+..|..+|+.+-
T Consensus 107 ~~~~~~~-~~~~~~----~~SPdG~~la~~~~~~i~~~~~~~g~~~~ 148 (723)
T 1xfd_A 107 DPPEVSN-AKLQYA----GWGPKGQQLIFIFENNIYYCAHVGKQAIR 148 (723)
T ss_dssp CCTTCCS-CCCSBC----CBCSSTTCEEEEETTEEEEESSSSSCCEE
T ss_pred cCCcccc-cccccc----EECCCCCEEEEEECCeEEEEECCCCceEE
Confidence 2111100 000011 122244 4444567899999999987653
No 257
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=83.04 E-value=33 Score=40.63 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=34.9
Q ss_pred EEEEEEcCCCcEE-EEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeee
Q 003001 155 CLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 155 ~l~ald~~tG~~~-W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (859)
.++.+|..+|... |+.-...... ....+ ...++.+|+.+..+..+.+++.+|+.+|...|+.
T Consensus 295 ~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 357 (741)
T 1yr2_A 295 TVHVARVTNGKIGPVTALIPDLKA-QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT 357 (741)
T ss_dssp EEEEEEEETTEECCCEEEECSSSS-CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE
T ss_pred eEEEEECCCCCCcccEEecCCCCc-eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEE
Confidence 7888888887433 3322111111 11122 2467788877765544567999999886423444
No 258
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=82.85 E-value=48 Score=34.46 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=37.7
Q ss_pred CEEEEEeCCCEEEEEECCCCccceEEEcC-C--CcceeeeeeeecCEEEEEEcCCCeEEEEeCCC
Q 003001 54 KRVVVSTEENVIASLDLRHGEIFWRHVLG-I--NDVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115 (859)
Q Consensus 54 ~~Vyvat~~g~l~ALd~~tG~ilWR~~l~-~--~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~t 115 (859)
+.+++++.+|.|.-.|.++|+..-...+. . ...+..+.....+..++.++.++.|+.||...
T Consensus 25 ~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 25 GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 47888899999999999887543333332 1 22343332222334555456677999999854
No 259
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=82.63 E-value=15 Score=41.91 Aligned_cols=106 Identities=10% Similarity=0.029 Sum_probs=57.8
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE--EeC----CEEEEEEcCCCcEE
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV--SSK----GCLHAVSSIDGEIL 167 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV--~~~----g~l~ald~~tG~~~ 167 (859)
.++.++++++..+.+..||..+|++.--..... . + . ....++..++ ..+ +.|+.+|..+|+..
T Consensus 120 dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~--~-~------~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 120 TGEAVVFTGATEDRVALYALDGGGLRELARLPG--F--G-F------VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--C--E-E------EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--c--e-E------EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence 566677766554567789999887654332221 1 1 1 1111344444 233 67999999999876
Q ss_pred EEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCcee
Q 003001 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (859)
Q Consensus 168 W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~ 215 (859)
- ..... . ....+..+.++..++ .+..++ ...++.+|+.+|+..
T Consensus 189 ~-l~~~~-~-~~~~~~~SpDG~~l~-~~~~~~-~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 189 V-FDSGE-G-SFSSASISPGMKVTA-GLETAR-EARLVTVDPRDGSVE 231 (582)
T ss_dssp E-ECCSS-C-EEEEEEECTTSCEEE-EEECSS-CEEEEEECTTTCCEE
T ss_pred E-eecCC-C-ccccceECCCCCEEE-EccCCC-eeEEEEEcCCCCcEE
Confidence 2 21111 1 122333334455555 333322 236888999999876
No 260
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=81.97 E-value=45 Score=33.48 Aligned_cols=192 Identities=13% Similarity=0.022 Sum_probs=96.9
Q ss_pred CCCEEEEEeC-CCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.++.||+++. .+.|..+|+.++.. +...... ....++.....++.++++ ...+.|..+|.. |+..=.. ....
T Consensus 46 ~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~-~~~~- 120 (267)
T 1npe_A 46 VDKVVYWTDISEPSIGRASLHGGEP--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVL-FDTG- 120 (267)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCC--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-ECSS-
T ss_pred CCCEEEEEECCCCEEEEEecCCCCc--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEEEE-EECC-
Confidence 3678999875 57999999866543 2222221 112244222223445544 345689988875 4321111 1111
Q ss_pred ccCCcccccccccccC-CCeEEEEe----CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 129 HSKPLLLVPTNLKVDK-DSLILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 129 ls~~~~~~~~~~~~~~-~~~VvV~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
+ ..|.....+. ++.+++.. .+++++++.. |...=..... ....|..+.....++.+|+.....+ +
T Consensus 121 ~-----~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~---~ 190 (267)
T 1npe_A 121 L-----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTH---R 190 (267)
T ss_dssp C-----SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTT---E
T ss_pred C-----CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCC---E
Confidence 1 0111113333 46777753 3688888754 4322111111 1112334432234678997654433 5
Q ss_pred EEEEEcCCCceeeeee-eecccCccCceEEecCcEEEEEECCCCeEEEEEeecCeeeEEEEe
Q 003001 204 AYQINAMNGELLNHET-AAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (859)
Q Consensus 204 v~ald~~tG~~~w~~~-v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~ 264 (859)
+..+|+.++....-.. ...|. -+.+.++.+++.|..++.+.+++..+|+. .+.++
T Consensus 191 I~~~~~~g~~~~~~~~~~~~P~-----gi~~d~~~lyva~~~~~~v~~~d~~~g~~-~~~i~ 246 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEGLQYPF-----AVTSYGKNLYYTDWKTNSVIAMDLAISKE-MDTFH 246 (267)
T ss_dssp EEEEETTEEEEEEEEECCCSEE-----EEEEETTEEEEEETTTTEEEEEETTTTEE-EEEEC
T ss_pred EEEEecCCCceEEEecCCCCce-----EEEEeCCEEEEEECCCCeEEEEeCCCCCc-eEEEc
Confidence 8888986543321111 11111 11234567778888788899999888772 44444
No 261
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=81.59 E-value=71 Score=37.03 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=39.8
Q ss_pred cCCCEEEEEeCC---------CEEEEEECCCCccceEEEcCCCcc----eeeeee-eecCEEEEEEcCCCeEEEEeCCCC
Q 003001 51 TGRKRVVVSTEE---------NVIASLDLRHGEIFWRHVLGINDV----VDGIDI-ALGKYVITLSSDGSTLRAWNLPDG 116 (859)
Q Consensus 51 ~~~~~Vyvat~~---------g~l~ALd~~tG~ilWR~~l~~~~~----i~~l~~-~~~~~~V~Vs~~g~~v~Ald~~tG 116 (859)
++++.|+.++.+ +.+.-.|.++|+. + .+..... +..+.. +.|+.+++++. +.|+.||..+|
T Consensus 70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g 144 (723)
T 1xfd_A 70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--Q-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGK 144 (723)
T ss_dssp TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--E-ECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSS
T ss_pred CCCCEEEEEecCccceeecceeeEEEEECCCCce--E-eccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCC
Confidence 456667666653 7888999999986 2 3322210 111211 24556666554 58999999999
Q ss_pred cEeE
Q 003001 117 QMVW 120 (859)
Q Consensus 117 ~llW 120 (859)
+..-
T Consensus 145 ~~~~ 148 (723)
T 1xfd_A 145 QAIR 148 (723)
T ss_dssp CCEE
T ss_pred ceEE
Confidence 8653
No 262
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=81.40 E-value=44 Score=35.08 Aligned_cols=70 Identities=7% Similarity=-0.130 Sum_probs=39.6
Q ss_pred cCCCEEEEEe-C--CCEEEEEECCCCccceEEEcCCCcceee-ee-eeecCEEEEEEcCCCeEEEEeCCCCcEeEEEe
Q 003001 51 TGRKRVVVST-E--ENVIASLDLRHGEIFWRHVLGINDVVDG-ID-IALGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (859)
Q Consensus 51 ~~~~~Vyvat-~--~g~l~ALd~~tG~ilWR~~l~~~~~i~~-l~-~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~ 123 (859)
++++.|+... . ...|..+|.++|+. ++.......... .. .+.++.+++++.. +.|+.||..+|+..--..
T Consensus 45 pdG~~l~~~~~~~g~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 45 QDGKKLLFAGDFDGNRNYYLLNLETQQA--VQLTEGKGDNTFGGFISTDERAFFYVKNE-LNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTTEE--EECCCSSCBCTTTCEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCcE--EEeecCCCCccccceECCCCCEEEEEEcC-CcEEEEECCCCCcEEEEe
Confidence 3456655443 3 24799999998874 232222211111 21 1234556665554 589999999998654443
No 263
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=80.56 E-value=56 Score=37.54 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=37.2
Q ss_pred cCCCEEEEEeCC--------CEEEEEECC-CCcc-ceEEEcCC-CcceeeeeeeecCEEEEEEcCCC--eEEEEeCCCCc
Q 003001 51 TGRKRVVVSTEE--------NVIASLDLR-HGEI-FWRHVLGI-NDVVDGIDIALGKYVITLSSDGS--TLRAWNLPDGQ 117 (859)
Q Consensus 51 ~~~~~Vyvat~~--------g~l~ALd~~-tG~i-lWR~~l~~-~~~i~~l~~~~~~~~V~Vs~~g~--~v~Ald~~tG~ 117 (859)
++++.|+.++.+ ..|..+|.. +|+. ..++.... ...+......-++.+++.+..++ .|+.||..+|+
T Consensus 197 pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 197 PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 456667666532 478999988 6732 22333322 11222221122334666665555 79999988887
Q ss_pred E
Q 003001 118 M 118 (859)
Q Consensus 118 l 118 (859)
.
T Consensus 277 ~ 277 (662)
T 3azo_A 277 A 277 (662)
T ss_dssp E
T ss_pred e
Confidence 4
No 264
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=79.61 E-value=24 Score=40.16 Aligned_cols=67 Identities=12% Similarity=-0.015 Sum_probs=41.7
Q ss_pred cCCCEEEEEeCC----CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCC--eEEEEeCCCCcEe
Q 003001 51 TGRKRVVVSTEE----NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGS--TLRAWNLPDGQMV 119 (859)
Q Consensus 51 ~~~~~Vyvat~~----g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~--~v~Ald~~tG~ll 119 (859)
++++.++.++.+ +.|+.+|.++|+.. +.......+......-++..++.+..++ .|+.||..+|+..
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 456667766554 67999999999854 3333332232221222334444454455 8999999999987
No 265
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=79.41 E-value=58 Score=33.17 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeee--ecCEEEEEEcCCCeEEEEeCCCCc--EeEEEeccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIA--LGKYVITLSSDGSTLRAWNLPDGQ--MVWESFLRG 126 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~--~~~~~V~Vs~~g~~v~Ald~~tG~--llW~~~~~~ 126 (859)
+++.+++++.+|.|.-.|..++.......+... ..+..+... ..+..++.++.++.|+.||..+|+ .+-......
T Consensus 20 ~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 99 (297)
T 2pm7_B 20 YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS 99 (297)
T ss_dssp TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence 467899999999999999876543333444332 233333211 113344445567799999999885 222222221
Q ss_pred ccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCc
Q 003001 127 SKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGE 165 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~ 165 (859)
... ......+ +..+..++ . .||.+...|..++.
T Consensus 100 ~~v-~~v~~~p-----~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 100 ASV-NSVQWAP-----HEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp SCE-EEEEECC-----GGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred Cce-eEEEeCc-----CCCCcEEEEEECCCcEEEEEecCCC
Confidence 111 0111111 11133333 3 48888888887763
No 266
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=79.25 E-value=27 Score=40.66 Aligned_cols=149 Identities=8% Similarity=0.051 Sum_probs=78.0
Q ss_pred ccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc-----ceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcE------
Q 003001 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM------ 118 (859)
Q Consensus 50 ~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-----~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~l------ 118 (859)
++++..+-+++.+|.+...|.++ ++.. ++... .+..+....++..++.++.+++|+-||..+|.+
T Consensus 94 SPdG~~LAs~s~dg~V~iwd~~~---~l~~-l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 94 SPIDDWMAVLSNNGNVSVFKDNK---MLTN-LDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp CSSSSCEEEEETTSCEEEEETTE---EEEE-CCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCc---eeee-ccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 45677788999999999998433 5554 23121 233342234555666677788999999999863
Q ss_pred -eEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcE--EEEEeccCcceeeeeEEEeecCCeEEEE
Q 003001 119 -VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI--LWTRDFAAESVEVQQVIQLDESDQIYVV 194 (859)
Q Consensus 119 -lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~v~~~~~~~vyvv 194 (859)
+-......+... ..+.. .....++ +++. .|+.++..|..+++. .|..-..........+..+ + ...+.
T Consensus 170 ~l~ti~~~~~gh~--~~V~s--VawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LAS 241 (588)
T 2j04_A 170 FESSIRLSDAGSK--DWVTH--IVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVL 241 (588)
T ss_dssp EEEEEECSCTTCC--CCEEE--EEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEE
T ss_pred eeeeeeccccccc--ccEEE--EEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEE
Confidence 344333221110 01111 0122244 3333 477788888777763 2332111111112223222 3 33433
Q ss_pred EecCCceeEEEEEEcCCCce
Q 003001 195 GYAGSSQFHAYQINAMNGEL 214 (859)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~ 214 (859)
+..+ .+.-+|..+|+.
T Consensus 242 a~~~----tIkLWd~~~~~~ 257 (588)
T 2j04_A 242 TCPG----YVHKIDLKNYSI 257 (588)
T ss_dssp ECSS----EEEEEETTTTEE
T ss_pred EeCC----eEEEEECCCCeE
Confidence 4333 477778887777
No 267
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=79.16 E-value=59 Score=38.06 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=39.7
Q ss_pred eccCCCEEEEEeC-----CCEEEEEECCCCccceEEEcCCCc-------ceeeeee-eecCEEEEEEc-CC---CeEEEE
Q 003001 49 QKTGRKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGIND-------VVDGIDI-ALGKYVITLSS-DG---STLRAW 111 (859)
Q Consensus 49 ~~~~~~~Vyvat~-----~g~l~ALd~~tG~ilWR~~l~~~~-------~i~~l~~-~~~~~~V~Vs~-~g---~~v~Al 111 (859)
|..+++++|.... .+.|+..+..+|+ |++.++.+. .+.+... +.|+.+++... .| ..|+.|
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQ--EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSC--CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCC--cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence 3345667665543 3568888876664 777765331 1222211 24555555432 22 479999
Q ss_pred eCCCCcEe
Q 003001 112 NLPDGQMV 119 (859)
Q Consensus 112 d~~tG~ll 119 (859)
|..+|+.+
T Consensus 153 dl~tg~~~ 160 (695)
T 2bkl_A 153 DVDSGEWS 160 (695)
T ss_dssp ETTTCCBC
T ss_pred ECCCCCCc
Confidence 99999864
No 268
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=78.96 E-value=36 Score=39.24 Aligned_cols=108 Identities=23% Similarity=0.307 Sum_probs=63.9
Q ss_pred CEEEEEECCCCccceEEEcCCCcc----eeeeeee--ecC---EEEEEEcCCC---------------------------
Q 003001 63 NVIASLDLRHGEIFWRHVLGINDV----VDGIDIA--LGK---YVITLSSDGS--------------------------- 106 (859)
Q Consensus 63 g~l~ALd~~tG~ilWR~~l~~~~~----i~~l~~~--~~~---~~V~Vs~~g~--------------------------- 106 (859)
..|.|++. +|+.+||..++.... ...+.+. .++ .+++.+.+|.
T Consensus 151 ~~l~aY~l-dG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpE 229 (591)
T 2zux_A 151 VLIDAYKL-DGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPE 229 (591)
T ss_dssp CEEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCC
T ss_pred cEEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCc
Confidence 57999998 599999999875421 0011111 122 3555444332
Q ss_pred eEEEEeCCCCcEeEEEeccCccccCCcc-------------cccccccccCCC-eEEE-E---eCCEEEEEEcCCCc--E
Q 003001 107 TLRAWNLPDGQMVWESFLRGSKHSKPLL-------------LVPTNLKVDKDS-LILV-S---SKGCLHAVSSIDGE--I 166 (859)
Q Consensus 107 ~v~Ald~~tG~llW~~~~~~~~ls~~~~-------------~~~~~~~~~~~~-~VvV-~---~~g~l~ald~~tG~--~ 166 (859)
.|..+|-.||+.+|......+.. ... +.+. .-.+++. .+++ . ....|.|+|..+|+ +
T Consensus 230 yL~vfdG~TG~~l~~~~~~p~rg--~~~~WGD~ygnR~drf~~~v-ayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~ 306 (591)
T 2zux_A 230 YLTVFQGSTGKELVTANFEPARG--NVSDWGDSYGNRVDRFLAGI-AYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK 306 (591)
T ss_dssp EEEEEETTTCCEEEEEECSSCCC--CGGGGTCSSSSGGGCEEEEE-ECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCCEEecccCCCCCC--cccccccccccccccceeeE-EECCCCCceEEEeccccceeEEEEEECCCCceEE
Confidence 48999999999999988754321 000 0000 0122222 2333 2 24679999999997 5
Q ss_pred EEEEeccC
Q 003001 167 LWTRDFAA 174 (859)
Q Consensus 167 ~W~~~~~~ 174 (859)
+|++....
T Consensus 307 ~W~~d~~~ 314 (591)
T 2zux_A 307 LWTLDSSK 314 (591)
T ss_dssp EEEEETTS
T ss_pred EEEecCCC
Confidence 89998864
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=78.39 E-value=87 Score=34.60 Aligned_cols=199 Identities=12% Similarity=0.130 Sum_probs=95.1
Q ss_pred CCEEEEEeCCC-----EEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccC
Q 003001 53 RKRVVVSTEEN-----VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRG 126 (859)
Q Consensus 53 ~~~Vyvat~~g-----~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~ 126 (859)
++.||++...+ .+..+++..+ ..+...+..-....++.....++.++++. .++.|+.+|+.+|...+......
T Consensus 192 dG~lyVad~~~~~~~~gv~~~~~~~~-~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~ 270 (433)
T 4hw6_A 192 NGDMVVVDDQSSDTNTGIYLFTRASG-FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD 270 (433)
T ss_dssp TCCEEEEECCSCTTSEEEEEECGGGT-TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS
T ss_pred CCCEEEEcCCCCcccceEEEEECCCC-eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC
Confidence 44488887633 3666665433 33333332111112331112245566654 45689999999998855443221
Q ss_pred ccccCCcccccccccccCCC-eEEEEe--CCEEEEEEcC--CCcE----EEEEeccC-c---------ce-eeeeEEEe-
Q 003001 127 SKHSKPLLLVPTNLKVDKDS-LILVSS--KGCLHAVSSI--DGEI----LWTRDFAA-E---------SV-EVQQVIQL- 185 (859)
Q Consensus 127 ~~ls~~~~~~~~~~~~~~~~-~VvV~~--~g~l~ald~~--tG~~----~W~~~~~~-~---------~~-~~~~~v~~- 185 (859)
.. .... +...+.++ .+++.. ++++++++.. +|.. .+.-.... + .+ .|..+.-.
T Consensus 271 ~~---~~~~---~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 271 TK---GSNF---HIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp CC---SSCE---EEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred CC---CCcc---cEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 11 0000 01233344 477763 7899997744 4532 11111000 0 01 24444311
Q ss_pred -------ecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeec--ccC-----ccCceEEecCcEEEEEECCCCeEEEE
Q 003001 186 -------DESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF--SGG-----FVGDVALVSSDTLVTLDTTRSILVTV 251 (859)
Q Consensus 186 -------~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~--~~~-----~s~~~~~v~~~~lv~~d~~~~~l~v~ 251 (859)
...+.+|+.-..++ ++..+++ +|...--.-... ..+ ......+ ....-+|+|+..|.|++.
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~---~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~-~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSH---TVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALF-NHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTT---EEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBC-SSEEEEEEETTTTEEEEE
T ss_pred cccccccCCCCcEEEEECCCC---EEEEECC-CCCEEEEEeCCCCCccccCCCccccccEe-CCCcEEEEECCCCEEEEE
Confidence 35667887544333 4667775 775432111000 001 0000000 123346788556888888
Q ss_pred EeecCeeeEEEEee
Q 003001 252 SFKNRKIAFQETHL 265 (859)
Q Consensus 252 ~L~sg~~~~~~~~l 265 (859)
|..+.. ++.+.+
T Consensus 420 D~~n~r--Ir~i~~ 431 (433)
T 4hw6_A 420 DCDNHR--VRKIAP 431 (433)
T ss_dssp EGGGTE--EEEEEE
T ss_pred eCCCCE--EEEEec
Confidence 888777 565554
No 270
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=78.36 E-value=80 Score=34.22 Aligned_cols=200 Identities=12% Similarity=0.201 Sum_probs=101.0
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCccee---eeeeeecCE---EEEEEcC---CCeEEEE--eCCCCcEeEE
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVD---GIDIALGKY---VITLSSD---GSTLRAW--NLPDGQMVWE 121 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~---~l~~~~~~~---~V~Vs~~---g~~v~Al--d~~tG~llW~ 121 (859)
..+++....++-|+.+|. +|+++=+.......+++ ++ ..++. +++++.. .++|+.+ |+.++. |+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~--~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~--l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDF--PLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT--LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEE--EETTEEEEEEEEEECSTTCCEEEEEEECTTTCC--EE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEeccc--ccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc--ee
Confidence 344444456689999999 99998665432222222 22 22333 4455543 3678777 777776 44
Q ss_pred EeccC--ccccCC-cccccccccccC-CC--eEEEE-eCCEEEEEEc---CCC----cEEEEEeccCcceeeeeEEEeec
Q 003001 122 SFLRG--SKHSKP-LLLVPTNLKVDK-DS--LILVS-SKGCLHAVSS---IDG----EILWTRDFAAESVEVQQVIQLDE 187 (859)
Q Consensus 122 ~~~~~--~~ls~~-~~~~~~~~~~~~-~~--~VvV~-~~g~l~ald~---~tG----~~~W~~~~~~~~~~~~~~v~~~~ 187 (859)
.-... +.. .. ....+...-.+. .+ .+||. .+|++.-++. .+| +++.++..+. .++.|+--..
T Consensus 115 ~i~~~~~pv~-t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs---q~EgcvvDd~ 190 (355)
T 3amr_A 115 SMTDPDHPIA-TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS---QTEGMAADDE 190 (355)
T ss_dssp ECSCTTSCEE-CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS---CEEEEEEETT
T ss_pred eccccccCcC-CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC---CcceEEEcCC
Confidence 33211 100 00 001111000011 23 34554 3677666444 333 5566666653 3666753235
Q ss_pred CCeEEEEEecCCceeEEEEEEcC-----CCceeeeeeee-cccCccCceEEec---CcEEEEEECCCCeEEEEEee-cCe
Q 003001 188 SDQIYVVGYAGSSQFHAYQINAM-----NGELLNHETAA-FSGGFVGDVALVS---SDTLVTLDTTRSILVTVSFK-NRK 257 (859)
Q Consensus 188 ~~~vyvv~~~g~~~~~v~ald~~-----tG~~~w~~~v~-~~~~~s~~~~~v~---~~~lv~~d~~~~~l~v~~L~-sg~ 257 (859)
.+.+|+.- ... -+..+|+. +++++...... +..+..+-.++.. .+++++.+..++++++.+.. +.+
T Consensus 191 ~g~Lyv~e-Ed~---GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 191 YGRLYIAE-EDE---AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp TTEEEEEE-TTT---EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred CCeEEEec-ccc---eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCc
Confidence 68888743 332 28888855 35555433111 1123333233322 24777887677789999986 444
Q ss_pred eeEEEEeec
Q 003001 258 IAFQETHLS 266 (859)
Q Consensus 258 ~~~~~~~l~ 266 (859)
-+..+.+.
T Consensus 267 -~vg~f~Ig 274 (355)
T 3amr_A 267 -YVADFRIT 274 (355)
T ss_dssp -EEEEEEEC
T ss_pred -EEEEEEec
Confidence 24555543
No 271
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=77.84 E-value=83 Score=34.11 Aligned_cols=147 Identities=14% Similarity=0.078 Sum_probs=81.8
Q ss_pred CCCeEEEEeC-CCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcc-eee
Q 003001 104 DGSTLRAWNL-PDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAES-VEV 179 (859)
Q Consensus 104 ~g~~v~Ald~-~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~-~~~ 179 (859)
.++.|+.|+. .+|+.+=...+.++.. .. .... .+.+++..++. .|+.+..-|.++|+.+.+....... ...
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v-~~-l~fs---~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v 229 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEE-TI-LTFA---EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASV 229 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSS-CE-EEEE---EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCC
T ss_pred CCCcEEEEEECCCCceeeeeccCCCce-ee-EEee---ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeee
Confidence 3678888888 5688776666655443 11 1111 22335667774 3999999999999999988643211 111
Q ss_pred eeEEEeecCCeEEEEEe---------cCCceeEEEEEEcCCCceeeeeeeecccCccCceEE--ecCcEEEEEECCCCeE
Q 003001 180 QQVIQLDESDQIYVVGY---------AGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL--VSSDTLVTLDTTRSIL 248 (859)
Q Consensus 180 ~~~v~~~~~~~vyvv~~---------~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~--v~~~~lv~~d~~~~~l 248 (859)
..+..+ .++..++.+. .|+....+...|+.+|+.+....+..|.+-.+..+- .++..+++... .+.+
T Consensus 230 ~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~-DgTI 307 (356)
T 2w18_A 230 CHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT-SGTI 307 (356)
T ss_dssp EEEEEE-ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEET-TSCE
T ss_pred EEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcC-CCcE
Confidence 111112 2344433221 233334566689999988765544444332222210 12335666654 4789
Q ss_pred EEEEeecCe
Q 003001 249 VTVSFKNRK 257 (859)
Q Consensus 249 ~v~~L~sg~ 257 (859)
++=|+.+|+
T Consensus 308 kIWDl~tGk 316 (356)
T 2w18_A 308 AIWDLLLGQ 316 (356)
T ss_dssp EEEETTTCS
T ss_pred EEEECCCCc
Confidence 999999987
No 272
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=76.51 E-value=30 Score=39.47 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=77.5
Q ss_pred CCEEEEEeCCCEEEEEECCCCccc---eEE------EcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCCc-EeEE
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIF---WRH------VLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQ-MVWE 121 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~il---WR~------~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~-llW~ 121 (859)
.+.+..++.+|.|.-.|..+|+.. ... .+... ..+..+.. ..++.++.++.++.|+-||..+|. +...
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~-s~~~~lasgs~DgtV~lWD~~~~~~~~~~ 303 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDF-LSPTTVVCGFKNGFVAEFDLTDPEVPSFY 303 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEE-SSSSEEEEEETTSEEEEEETTBCSSCSEE
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEe-cCCCeEEEEeCCCEEEEEECCCCCCceEE
Confidence 356777899999999999887532 100 11111 12222311 123355556667899999999884 3444
Q ss_pred EeccCccccCCcccccccccccCCC-eEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 122 SFLRGSKHSKPLLLVPTNLKVDKDS-LILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 122 ~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
.......+ ..+.. ....++ .+++. .||.+...|..+|+..=.............+..+.. +..++.+...
T Consensus 304 ~~~H~~~V----~sv~~--~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~-~~~l~s~~~d 376 (524)
T 2j04_B 304 DQVHDSYI----LSVST--AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ-IYSYIYSDGA 376 (524)
T ss_dssp EECSSSCE----EEEEE--ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT-TTEEEEECSS
T ss_pred eecccccE----EEEEE--EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC-cCeEEEeCCC
Confidence 44333222 11100 001133 55553 389999999888764322211110000112222222 3344444333
Q ss_pred CceeEEEEEEcCCCceeee
Q 003001 199 SSQFHAYQINAMNGELLNH 217 (859)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~ 217 (859)
+ .+..+|+.+|..+..
T Consensus 377 ~---tv~lwd~~~~~~~~~ 392 (524)
T 2j04_B 377 S---SLRAVPSRAAFAVHP 392 (524)
T ss_dssp S---EEEEEETTCTTCCEE
T ss_pred C---cEEEEECccccccee
Confidence 2 366678888876543
No 273
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=75.64 E-value=50 Score=39.11 Aligned_cols=151 Identities=11% Similarity=0.058 Sum_probs=79.4
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCc-----ceeeeeeeecCEEEEEEcCCCeEEEEeCCC------CcEe--
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGKYVITLSSDGSTLRAWNLPD------GQMV-- 119 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-----~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~t------G~ll-- 119 (859)
++.|+++|. +-|..+|+++|+...-....... .+..+ ....++.+.+++.++-|..+|..+ +...
T Consensus 383 ~g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~ 460 (758)
T 3ott_A 383 EQQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYI-FEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAE 460 (758)
T ss_dssp TSCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEE-EECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECS
T ss_pred CCCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEE-EEcCCCCEEEEECCCceEEEccccccccCCcceecc
Confidence 677999995 56999999998653221111111 12122 123456777777544588998753 2221
Q ss_pred EEEeccCccccCCcccccccccccCCCeEEE--EeCCEEEEEEcCCCcEEEEEeccCc-ceeeeeEEEeecCCeEEEEEe
Q 003001 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILV--SSKGCLHAVSSIDGEILWTRDFAAE-SVEVQQVIQLDESDQIYVVGY 196 (859)
Q Consensus 120 W~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV--~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~v~~~~~~~vyvv~~ 196 (859)
+.+.... .++.. .+.. ...+.++.+.+ ...+.|.++|.++++..--...... ...+..+ .....+.+++.+.
T Consensus 461 ~~~~~~~-~l~~~-~i~~--i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i-~~d~~g~lWigt~ 535 (758)
T 3ott_A 461 QNYSVHN-GLSGM-FINQ--IIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYL-LCDEDGLLWVGFH 535 (758)
T ss_dssp EEECGGG-TCSCS-CEEE--EEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEE-EECTTSCEEEEET
T ss_pred ccccccc-ccccc-eeee--EEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceE-EECCCCCEEEEec
Confidence 2222211 11111 0111 13455678887 4456699999998875432111111 1112222 2346788997653
Q ss_pred cCCceeEEEEEEcCCCcee
Q 003001 197 AGSSQFHAYQINAMNGELL 215 (859)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~ 215 (859)
++ +..+|+.+++..
T Consensus 536 -~G----l~~~~~~~~~~~ 549 (758)
T 3ott_A 536 -GG----VMRINPKDESQQ 549 (758)
T ss_dssp -TE----EEEECC--CCCC
T ss_pred -Cc----eEEEecCCCceE
Confidence 43 888999887653
No 274
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=75.60 E-value=83 Score=37.11 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=43.8
Q ss_pred cCCCEEEEEeC-----CCEEEEEECCCCccc-eEEEcCCCcceeeeeeeecCEEEEEEcC---CCeEEEEeCCCCcEeEE
Q 003001 51 TGRKRVVVSTE-----ENVIASLDLRHGEIF-WRHVLGINDVVDGIDIALGKYVITLSSD---GSTLRAWNLPDGQMVWE 121 (859)
Q Consensus 51 ~~~~~Vyvat~-----~g~l~ALd~~tG~il-WR~~l~~~~~i~~l~~~~~~~~V~Vs~~---g~~v~Ald~~tG~llW~ 121 (859)
.+++.|++.+. .+.|+.+|+.+|+.. |+..............+.++.+++.+.. ...|+.||..+|...|+
T Consensus 277 pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 356 (741)
T 1yr2_A 277 SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD 356 (741)
T ss_dssp TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEE
T ss_pred CCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccE
Confidence 34445665553 348999999988655 7776654422221112356666666542 35699999887533465
Q ss_pred Eec
Q 003001 122 SFL 124 (859)
Q Consensus 122 ~~~ 124 (859)
.-+
T Consensus 357 ~l~ 359 (741)
T 1yr2_A 357 TVV 359 (741)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
No 275
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=75.02 E-value=1.5e+02 Score=35.67 Aligned_cols=190 Identities=14% Similarity=0.052 Sum_probs=88.0
Q ss_pred CCEEEEEeC-CCEEEEEECCCCcc--ceEEEcCCC-cceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc
Q 003001 53 RKRVVVSTE-ENVIASLDLRHGEI--FWRHVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~tG~i--lWR~~l~~~-~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~ 127 (859)
+++||+++. .+.|..+++..... .++..+... ....++++- .++.+++.-...+.|+..++. |+.+=.. ...
T Consensus 435 ~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l--~~~ 511 (791)
T 3m0c_C 435 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL--FRE 511 (791)
T ss_dssp TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE--EEC
T ss_pred CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEE--EeC
Confidence 567887765 46777777653211 233333322 112244221 233344433334678888875 4332111 111
Q ss_pred cccCCcccccccccccC-CCeEEEEe---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 128 KHSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~-~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
.+.. |...+++. .+.+|+.. .++|.+++.......--.. .. -..|..+......+.+|++-.... +
T Consensus 512 ~l~~-----P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~-l~~P~GLavD~~~~~LYwaD~~~~---~ 581 (791)
T 3m0c_C 512 NGSK-----PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-EN-IQWPNGITLDLLSGRLYWVDSKLH---S 581 (791)
T ss_dssp TTCC-----EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SS-CSCEEEEEEETTTTEEEEEETTTT---E
T ss_pred CCCC-----cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CC-CCCceEEEEecCCCeEEEEeCCCC---c
Confidence 1100 11112222 35666653 2567777754322221111 11 012444432235788887643322 5
Q ss_pred EEEEEcCCCceeeeeeeecccCccCce-EEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 204 AYQINAMNGELLNHETAAFSGGFVGDV-ALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~~~~s~~~-~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
|..+|+ +|..+.... .....+..+. +-+.++.|+|+|..++.+..++..+|+
T Consensus 582 I~~~d~-dG~~~~~v~-~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 582 ISSIDV-NGGNRKTIL-EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEET-TSCSCEEEE-ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEec-CCCceEEEe-cCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence 777776 454443331 1112222221 123456788999888888888877776
No 276
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=73.40 E-value=51 Score=40.76 Aligned_cols=103 Identities=12% Similarity=0.078 Sum_probs=56.4
Q ss_pred CCEEEEEeCCCEEE-EEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIA-SLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~-ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
++.++.+++++.+. .+|..+|++. ........+..+...-++..++.++.++.++.||..+|++.-......... .
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~--~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v-~ 424 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAE--KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI-T 424 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEE--ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC-C
T ss_pred CCeEEEEECCCceEEEEECCCCCce--EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc-c
Confidence 34577777778888 8888877642 222221222223222233344445556699999999999876654332221 1
Q ss_pred CcccccccccccCCCeEEE-E-eC----------CEEEEEEcCCCc
Q 003001 132 PLLLVPTNLKVDKDSLILV-S-SK----------GCLHAVSSIDGE 165 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV-~-~~----------g~l~ald~~tG~ 165 (859)
...+ ..++..++ . .+ +.++..|..+|+
T Consensus 425 ~~~~-------SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 425 DFTI-------SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CEEE-------CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred ceEE-------CCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 1111 22444333 2 22 378888888876
No 277
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=72.74 E-value=25 Score=40.22 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=62.3
Q ss_pred CCEEEEEeCCCEEEEEECCCCccc-eEEEcCCCcceeeee-e-eecC-EEEEEEcCCCeEEEEeCCCCcEeEEEeccCc-
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIF-WRHVLGINDVVDGID-I-ALGK-YVITLSSDGSTLRAWNLPDGQMVWESFLRGS- 127 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~il-WR~~l~~~~~i~~l~-~-~~~~-~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~- 127 (859)
++.+++++.+|.|.-.|.++|+.. .....- ...+..+. . ...+ .+++-++.++.|+-||..+|+..=.......
T Consensus 277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H-~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH-DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp SSEEEEEETTSEEEEEETTBCSSCSEEEECS-SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred CCeEEEEeCCCEEEEEECCCCCCceEEeecc-cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 467999999999999999998543 322221 12233331 1 1222 3444355577999999998875432221111
Q ss_pred -cccCCcccccccccccCCCeEEEE--eCCEEEEEEcCCCcEEEEEe
Q 003001 128 -KHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 128 -~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~tG~~~W~~~ 171 (859)
.+ ..... ..++..++. .++.+...|..+|....+..
T Consensus 356 ~~v-~~v~f-------sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~ 394 (524)
T 2j04_B 356 SNL-VPVVY-------CPQIYSYIYSDGASSLRAVPSRAAFAVHPLV 394 (524)
T ss_dssp CSC-CCEEE-------ETTTTEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred Ccc-cceEe-------CCCcCeEEEeCCCCcEEEEECcccccceeee
Confidence 01 01111 113434443 47788888988887665543
No 278
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=71.92 E-value=1.1e+02 Score=32.76 Aligned_cols=70 Identities=4% Similarity=-0.038 Sum_probs=40.7
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEe
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~ 123 (859)
+..|..+++++.|.--|.+++..+-...-... .+..+... .+...++.++.++.++.||..+|+...+..
T Consensus 156 ~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLTDEGPILAGYPLSS-PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EEEEEEEETTSEEEEEEEETTEEEEEEEECSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred CCEEEEEECCCeEEEEECCCCceeeeecCCCC-CcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 34567778999999999888876544332111 12222111 233355556667899999999998876654
No 279
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=71.24 E-value=1.2e+02 Score=32.79 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=39.3
Q ss_pred CCEEEEEe-------------CCCEEEEEECCC--CccceEEEcCC--C--cce--eeeeeee---cCEEEEEEcCC---
Q 003001 53 RKRVVVST-------------EENVIASLDLRH--GEIFWRHVLGI--N--DVV--DGIDIAL---GKYVITLSSDG--- 105 (859)
Q Consensus 53 ~~~Vyvat-------------~~g~l~ALd~~t--G~ilWR~~l~~--~--~~i--~~l~~~~---~~~~V~Vs~~g--- 105 (859)
++.+|+++ ..|.|+.+|+++ ++.. +..+.. . ... .|+.... +...++|...+
T Consensus 60 ~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~ 138 (355)
T 3sre_A 60 NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSS 138 (355)
T ss_dssp TSEEEEEECCC-----------CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTC
T ss_pred CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCC
Confidence 67899997 689999999984 4421 222222 1 111 1332222 22234443221
Q ss_pred C--eEEEEeCCCCcEeEEEeccCc
Q 003001 106 S--TLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 106 ~--~v~Ald~~tG~llW~~~~~~~ 127 (859)
. .+.-+|..++.+.+-.+....
T Consensus 139 s~ielf~~d~~~~~~~~~~~~~g~ 162 (355)
T 3sre_A 139 STVEVFKFQEEEKSLLHLKTIRHK 162 (355)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCT
T ss_pred CeEEEEEEECCCCEEEEEeccccC
Confidence 2 366777777777776665544
No 280
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=71.10 E-value=1.4e+02 Score=33.55 Aligned_cols=168 Identities=9% Similarity=-0.004 Sum_probs=89.7
Q ss_pred CCCEEEEEeC--------CCEEEEEECCC-----CccceEEEcCCCc-cee-----------eeeee--ecCEEEEEEc-
Q 003001 52 GRKRVVVSTE--------ENVIASLDLRH-----GEIFWRHVLGIND-VVD-----------GIDIA--LGKYVITLSS- 103 (859)
Q Consensus 52 ~~~~Vyvat~--------~g~l~ALd~~t-----G~ilWR~~l~~~~-~i~-----------~l~~~--~~~~~V~Vs~- 103 (859)
..+.+||.+- .-.|+.+|.+. |+++-|..++..+ ... +.... ...+.+++++
T Consensus 24 ~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l 103 (462)
T 2ece_A 24 PEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGL 103 (462)
T ss_dssp CCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBT
T ss_pred cceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccC
Confidence 3556777642 23689999988 9999999998742 111 11001 3345666655
Q ss_pred CCCeEEEEeCCCC--cEeEEEeccCccccCCc-ccccccccccCCCeEEEE--eC------CEEEEEEcCCCcEEEEEec
Q 003001 104 DGSTLRAWNLPDG--QMVWESFLRGSKHSKPL-LLVPTNLKVDKDSLILVS--SK------GCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 104 ~g~~v~Ald~~tG--~llW~~~~~~~~ls~~~-~~~~~~~~~~~~~~VvV~--~~------g~l~ald~~tG~~~W~~~~ 172 (859)
..++|+.+|..+- ++.=......+.+.... ...+.......++ ++|. ++ |.+..+|.++++++=+++.
T Consensus 104 ~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~ 182 (462)
T 2ece_A 104 RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI 182 (462)
T ss_dssp TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS
T ss_pred CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc
Confidence 4578999998643 32222222111110000 0001000111245 6663 34 7899999999998766554
Q ss_pred cCcc-eeeeeEEEeecCCeEEEEEecC----------------CceeEEEEEEcCCCceeeeeeee
Q 003001 173 AAES-VEVQQVIQLDESDQIYVVGYAG----------------SSQFHAYQINAMNGELLNHETAA 221 (859)
Q Consensus 173 ~~~~-~~~~~~v~~~~~~~vyvv~~~g----------------~~~~~v~ald~~tG~~~w~~~v~ 221 (859)
.... .-.+.+......+.+| .+-.| .+.-+|..+|..+|+.+.+..+.
T Consensus 183 ~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 183 DRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp BCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred CCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 4221 1122333233444444 44322 11236888999999887776654
No 281
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=70.47 E-value=1.5e+02 Score=36.60 Aligned_cols=147 Identities=8% Similarity=-0.066 Sum_probs=75.6
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecCEEEEEEcCCCeEE-EEeCCCCcEeEEEeccCccc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLR-AWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~-~i~~l~~~~~~~~V~Vs~~g~~v~-Ald~~tG~llW~~~~~~~~l 129 (859)
++..+++++ .+.+..+|..+|+.. +...... .+..+....++.+++.+. ...++ .||..+|++. .+.....
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~sdg~~l~~~s~-~~~l~~~~d~~~~~~~---~l~~~~~ 379 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGDTKVAFIHGTR-EGDFLGIYDYRTGKAE---KFEENLG 379 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBEE--ECSCCSCEEEEEECSSSEEEEEEEET-TEEEEEEEETTTCCEE---ECCCCCC
T ss_pred CCCEEEEEE-cCEEEEEcCCCCceE--EccCCCcceEEeeeEcCCCeEEEEEC-CCceEEEEECCCCCce---EecCCcc
Confidence 344455555 778889998888643 2111111 222222221223444444 55788 8999888653 2221110
Q ss_pred cCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecC------Cce
Q 003001 130 SKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG------SSQ 201 (859)
Q Consensus 130 s~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g------~~~ 201 (859)
....+ ....++..++ . .++.++.+|..+|+..-......... ..+..+..+..+...+..+ ...
T Consensus 380 --~~~~~----~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v--~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 380 --NVFAM----GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI--TDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp --SEEEE----EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC--CCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred --ceeee----EECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc--cceEECCCCCeEEEEecCccccccCCCC
Confidence 00111 1222454444 3 47899999999999876553322211 1222233444454444432 223
Q ss_pred eEEEEEEcCCCc
Q 003001 202 FHAYQINAMNGE 213 (859)
Q Consensus 202 ~~v~ald~~tG~ 213 (859)
..+..+|+.+|+
T Consensus 452 ~~i~l~d~~~g~ 463 (1045)
T 1k32_A 452 QAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEEEETTTTE
T ss_pred CeEEEEECCCCc
Confidence 468888999887
No 282
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=69.90 E-value=41 Score=39.27 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=42.0
Q ss_pred cCCCEEEEEeC---------CCEEEEEECCCCccceEEEcCCCcceeeee-eeecCEEEEEEcCCCeEEEEeCCCCcEe
Q 003001 51 TGRKRVVVSTE---------ENVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSDGSTLRAWNLPDGQMV 119 (859)
Q Consensus 51 ~~~~~Vyvat~---------~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~-~~~~~~~V~Vs~~g~~v~Ald~~tG~ll 119 (859)
++++.|+.++. ++.|...|.++|+.+....+... +.... .+.|+.+++++ ++.|+.||..+|+..
T Consensus 69 pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~--~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 69 PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRP--IQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPF 143 (719)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSS--BCCEEECSSTTCEEEEE--TTEEEEESSTTSCCE
T ss_pred CCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcc--cccceECCCCCEEEEEE--CCeEEEEeCCCCCcE
Confidence 45666776665 58999999999987543334322 22121 13456666654 358999999999864
No 283
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=69.43 E-value=19 Score=37.47 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=42.5
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCC-cceeeeeee--ecCEEEEEEcCCCeEEEEeCCCCc
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIA--LGKYVITLSSDGSTLRAWNLPDGQ 117 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~--~~~~~V~Vs~~g~~v~Ald~~tG~ 117 (859)
+++.+.+++.++.|.-.|.++|+..-...+... ..+..+... ..+..++.++.++.|+.||..+|+
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence 466799999999999999998865444444322 233333211 123344435556799999999884
No 284
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=68.78 E-value=1.4e+02 Score=34.59 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=43.3
Q ss_pred CCCEEEEEeC--CCEEEEEECCCCccceEEEcCCCcc-eeeeeeee-cCEEEEEEc-CC-----CeEEEEeCCCCcEeEE
Q 003001 52 GRKRVVVSTE--ENVIASLDLRHGEIFWRHVLGINDV-VDGIDIAL-GKYVITLSS-DG-----STLRAWNLPDGQMVWE 121 (859)
Q Consensus 52 ~~~~Vyvat~--~g~l~ALd~~tG~ilWR~~l~~~~~-i~~l~~~~-~~~~V~Vs~-~g-----~~v~Ald~~tG~llW~ 121 (859)
.+++||+... .+.+..+|+.++ .|+..-+.+.. ........ ++.+++++| .+ ..+..||+.+++ |+
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE--EE
T ss_pred CCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc--ce
Confidence 3677888765 457999999987 59876432211 11111234 556666676 22 469999999876 88
Q ss_pred Ee
Q 003001 122 SF 123 (859)
Q Consensus 122 ~~ 123 (859)
.-
T Consensus 328 ~~ 329 (656)
T 1k3i_A 328 SL 329 (656)
T ss_dssp EE
T ss_pred eC
Confidence 64
No 285
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=68.76 E-value=1.8e+02 Score=33.85 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=71.7
Q ss_pred cCCCEE-EEEeCC----CEEEEEECCCCccc-eEEEcCCCcceeeee-eeecCEEEEEEcCC------------CeEEEE
Q 003001 51 TGRKRV-VVSTEE----NVIASLDLRHGEIF-WRHVLGINDVVDGID-IALGKYVITLSSDG------------STLRAW 111 (859)
Q Consensus 51 ~~~~~V-yvat~~----g~l~ALd~~tG~il-WR~~l~~~~~i~~l~-~~~~~~~V~Vs~~g------------~~v~Al 111 (859)
+++++| |..+.. ..|.-+|.++|+.+ =. .++.. ....+. .+.+..+++.+.+. ..|+.|
T Consensus 130 PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~ 207 (695)
T 2bkl_A 130 WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH 207 (695)
T ss_dssp TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence 445554 444333 58999999999864 11 11111 001121 12345566654422 238999
Q ss_pred eCCCCc----EeEEEeccCccccCCcccccccccccCCCe-EEE-EeCC----EEEEEEcCCCcEEEEEeccCcceeeee
Q 003001 112 NLPDGQ----MVWESFLRGSKHSKPLLLVPTNLKVDKDSL-ILV-SSKG----CLHAVSSIDGEILWTRDFAAESVEVQQ 181 (859)
Q Consensus 112 d~~tG~----llW~~~~~~~~ls~~~~~~~~~~~~~~~~~-VvV-~~~g----~l~ald~~tG~~~W~~~~~~~~~~~~~ 181 (859)
+..+|. ++++..-.... ... .....++. +++ ..++ .++.++..+|+..--....... ..
T Consensus 208 ~l~t~~~~~~lv~~~~~~~~~------~~~--~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~ 276 (695)
T 2bkl_A 208 TLGTEPSKDTVVHERTGDPTT------FLQ--SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK---YE 276 (695)
T ss_dssp ETTSCGGGCEEEECCCCCTTC------EEE--EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC---EE
T ss_pred ECCCCchhceEEEecCCCCEE------EEE--EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce---EE
Confidence 988876 44432211110 000 01112333 333 2333 6777766666533222111111 11
Q ss_pred EEEeecCCeEEEEEecCCceeEEEEEEcCCCce-eeeee
Q 003001 182 VIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL-LNHET 219 (859)
Q Consensus 182 ~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~-~w~~~ 219 (859)
.+ ...++ +|+.+..+....+++.+|+.+|+. .|+.-
T Consensus 277 ~~-~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 313 (695)
T 2bkl_A 277 VH-AWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEI 313 (695)
T ss_dssp EE-EETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEE
T ss_pred EE-ecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEE
Confidence 22 12444 666655333345799999988864 35543
No 286
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=68.52 E-value=1e+02 Score=35.98 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=43.7
Q ss_pred CCCEEEEEeC----CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcC---CCeEEEEeCCCCcE-eEEEe
Q 003001 52 GRKRVVVSTE----ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD---GSTLRAWNLPDGQM-VWESF 123 (859)
Q Consensus 52 ~~~~Vyvat~----~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~---g~~v~Ald~~tG~l-lW~~~ 123 (859)
+++.+++... .+.|+-+|+.+|+..|+................++.+++++.. ...|+.+|..+|.. .|+.-
T Consensus 244 Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l 323 (693)
T 3iuj_A 244 DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL 323 (693)
T ss_dssp TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE
Confidence 4445544432 2589999998887667765544322211112346667776653 26899999988764 57643
No 287
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=68.40 E-value=1.4e+02 Score=32.60 Aligned_cols=111 Identities=12% Similarity=0.023 Sum_probs=62.2
Q ss_pred CCCEEEE----EeCCCEEEEEECCCC--------ccceEEEcCC--Ccceeeeeee-ecCEEEEEEcCCCeEEEEeCCCC
Q 003001 52 GRKRVVV----STEENVIASLDLRHG--------EIFWRHVLGI--NDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDG 116 (859)
Q Consensus 52 ~~~~Vyv----at~~g~l~ALd~~tG--------~ilWR~~l~~--~~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG 116 (859)
+++.+++ ++.++.|.-.|.+++ +.+.....-. ...+..+... .++.+++.++.++.|+.||..+|
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 4556663 556889999998877 4444444422 1223333221 22345554555679999999999
Q ss_pred cEeEEEeccCccccCCcccccccccccCCC-eEEEE-eCCEEEEEEcCCCcEEEEEe
Q 003001 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 117 ~llW~~~~~~~~ls~~~~~~~~~~~~~~~~-~VvV~-~~g~l~ald~~tG~~~W~~~ 171 (859)
............. ..+ ....++ .+++. .||.+..+|.. |+..=+..
T Consensus 183 ~~~~~~~~~~~~v----~~v----~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 183 VKVCATLPSTVAV----TSV----CWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp EEEEEEECGGGCE----EEE----EECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred cceeeccCCCCce----eEE----EEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 7765544322211 111 112234 34443 48999999987 76654443
No 288
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=67.99 E-value=1.1e+02 Score=31.06 Aligned_cols=65 Identities=8% Similarity=0.073 Sum_probs=39.2
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCC-Ccceeeeeeeec--CEEEEEEcCCCeEEEEeCCCCc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGI-NDVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQ 117 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~-~~~i~~l~~~~~--~~~V~Vs~~g~~v~Ald~~tG~ 117 (859)
+..++.++.+|.|.--|.++|+..=...+.. ...+..+..... +..++.++.++.++.||..++.
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 5678899999999999999885211112221 112322211111 3355556667799999998774
No 289
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=67.96 E-value=1.2e+02 Score=31.42 Aligned_cols=65 Identities=8% Similarity=0.153 Sum_probs=33.7
Q ss_pred CCCEEEEEeCCCEEEEEECCCCcc---ceE--EEcCCC-cceeeeeeeecCEEEEEEcCCCeEEEEeCCCC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEI---FWR--HVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDG 116 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~i---lWR--~~l~~~-~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG 116 (859)
++..+++++.++.|.-.|.+++.. .++ ..+... ..+..+....++..++.++.++.|+-||..++
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 466788888999998888754321 122 122211 22333322223334444555679999999544
No 290
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=67.36 E-value=76 Score=37.54 Aligned_cols=150 Identities=14% Similarity=0.067 Sum_probs=80.1
Q ss_pred CCCEEEEEeCCCEEEEEECCCC-----c-cc--eEEEcCCCc---ceeeeeeeecCEEEEE--EcCCCeEEEEeCCCCcE
Q 003001 52 GRKRVVVSTEENVIASLDLRHG-----E-IF--WRHVLGIND---VVDGIDIALGKYVITL--SSDGSTLRAWNLPDGQM 118 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG-----~-il--WR~~l~~~~---~i~~l~~~~~~~~V~V--s~~g~~v~Ald~~tG~l 118 (859)
.+++++++|..+-|..+|+++. . .. ++....... .+..+ ....++.+.+ ++.+ -|..+|+.+++.
T Consensus 428 ~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i-~~d~~g~lWi~~~t~~-Gl~~~d~~~~~~ 505 (758)
T 3ott_A 428 TAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI-IPDNEGNVWVLLYNNK-GIDKINPRTREV 505 (758)
T ss_dssp TTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE-EECTTSCEEEEETTCS-SEEEEETTTTEE
T ss_pred CCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE-EEcCCCCEEEEccCCC-CcEEEeCCCCce
Confidence 3678999998777899997641 1 11 222111110 12222 1234455555 5544 489999998875
Q ss_pred eEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecC
Q 003001 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (859)
Q Consensus 119 lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g 198 (859)
.- .. .. .+... ....+...+.++.+.+.+.+.|.++|..+++...-....-+...+..+. ...+.+++.+..|
T Consensus 506 ~~-~~-~~-~~~~~--~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~--~~~g~lWi~t~~G 578 (758)
T 3ott_A 506 TK-LF-AD-ELTGE--KSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQSISFGSFSNNEILSMT--CVKNSIWVSTTNG 578 (758)
T ss_dssp EE-EC-TT-TSCGG--GCEEEEEECTTSCEEEEETTEEEEECC--CCCCBCCCCC---CCEEEEE--EETTEEEEEESSC
T ss_pred EE-ec-CC-CcCCC--cccceEEECCCCCEEEEecCceEEEecCCCceEEecccCCCccceEEEE--ECCCCEEEECCCC
Confidence 42 11 11 11000 0000123455688888777789999998886432111111111233343 2578899877555
Q ss_pred CceeEEEEEEcCCCcee
Q 003001 199 SSQFHAYQINAMNGELL 215 (859)
Q Consensus 199 ~~~~~v~ald~~tG~~~ 215 (859)
+..+|+.+++..
T Consensus 579 -----l~~~~~~~~~~~ 590 (758)
T 3ott_A 579 -----LWIIDRKTMDAR 590 (758)
T ss_dssp -----EEEEETTTCCEE
T ss_pred -----eEEEcCCCceeE
Confidence 899999988754
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=66.49 E-value=1.4e+02 Score=31.75 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=17.5
Q ss_pred CCEEEEEeCCCEEEEEECCCCc
Q 003001 53 RKRVVVSTEENVIASLDLRHGE 74 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ 74 (859)
++++||+...|.|..++ +|+
T Consensus 41 dG~l~V~e~~g~I~~i~--~g~ 60 (352)
T 2ism_A 41 DGGMLIAERPGRIRLFR--EGR 60 (352)
T ss_dssp TSCEEEEETTTEEEEEE--TTE
T ss_pred CCeEEEEeCCCeEEEEE--CCC
Confidence 67799999999999999 675
No 292
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=65.26 E-value=1.6e+02 Score=32.10 Aligned_cols=122 Identities=12% Similarity=0.012 Sum_probs=65.4
Q ss_pred ceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-EeCC
Q 003001 76 FWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKG 154 (859)
Q Consensus 76 lWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g 154 (859)
.|...++. +..+.. ++..++++ .++.|+.||..+-...+........+ . .+.+ - ...+++ ..+|
T Consensus 82 ~~~~~lp~---V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v-~--~i~~-----~-~p~~av~~~dG 146 (388)
T 1xip_A 82 KWEKEIPD---VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPV-F--QLKN-----V-NNTLVILNSVN 146 (388)
T ss_dssp SEEEECTT---EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCE-E--EEEE-----C-SSEEEEEETTS
T ss_pred eEEeeCCC---eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecce-e--eEEe-----c-CCCEEEEECCC
Confidence 35555443 444422 55677767 56789999988777666554332222 1 1111 1 123444 4699
Q ss_pred EEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeeeeeeccc
Q 003001 155 CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSG 224 (859)
Q Consensus 155 ~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~ 224 (859)
.|+.+|.++|+.. ... .. .+++ ..+....+ ++...+ .+..+++.+++..-+..+..|.
T Consensus 147 ~L~v~dl~~~~~~---~~~-~~---Vs~v-~WSpkG~~-vg~~dg---~i~~~~~~~~~~~~k~~I~~Pp 204 (388)
T 1xip_A 147 DLSALDLRTKSTK---QLA-QN---VTSF-DVTNSQLA-VLLKDR---SFQSFAWRNGEMEKQFEFSLPS 204 (388)
T ss_dssp EEEEEETTTCCEE---EEE-ES---EEEE-EECSSEEE-EEETTS---CEEEEEEETTEEEEEEEECCCH
T ss_pred CEEEEEccCCccc---ccc-CC---ceEE-EEcCCceE-EEEcCC---cEEEEcCCCccccccceecCCc
Confidence 9999999998863 111 11 1222 12444444 444433 3677788777754344454443
No 293
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=64.93 E-value=1.6e+02 Score=31.77 Aligned_cols=186 Identities=15% Similarity=0.039 Sum_probs=84.0
Q ss_pred CCEEEEEe-CCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
+++||+++ ..+.|..+++..+.. +..+... ....+++..-.++.++++ ...+.++..+...+...--. . ..+
T Consensus 127 ~~~ly~~D~~~~~I~r~~~~g~~~--~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~--~-~~l 201 (386)
T 3v65_B 127 RELVFWSDVTLDRILRANLNGSNV--EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--W-QSL 201 (386)
T ss_dssp TTEEEEEETTTTEEEEEETTSCCE--EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE--C-SSC
T ss_pred CCeEEEEeCCCCcEEEEecCCCCc--EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee--c-CCC
Confidence 56777775 456777787765531 2222211 111234221123334433 33456777776432211111 1 111
Q ss_pred cCCccccccccccc-CCCeEEEEe--C-CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEE
Q 003001 130 SKPLLLVPTNLKVD-KDSLILVSS--K-GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 130 s~~~~~~~~~~~~~-~~~~VvV~~--~-g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
..|....++ .++.+|+.. + ++|++++.. |..+-..-.... ..|..+.....++.+|++-...+ ++.
T Consensus 202 -----~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~-~~PnGlavd~~~~~lY~aD~~~~---~I~ 271 (386)
T 3v65_B 202 -----EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHL-FWPNGLTIDYAGRRMYWVDAKHH---VIE 271 (386)
T ss_dssp -----SCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSC-SCEEEEEEEGGGTEEEEEETTTT---EEE
T ss_pred -----CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCC-CCeeeEEEeCCCCEEEEEECCCC---EEE
Confidence 001011223 245666643 3 678888754 432222211111 11333432236788887654333 577
Q ss_pred EEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 206 QINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+|.. |...... ...++..+ -+.+.++.++|.|..++.+..++..+|+
T Consensus 272 ~~d~d-G~~~~~~---~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 272 RANLD-GSHRKAV---ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EECTT-SCSCEEE---ECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeCC-CCeeEEE---EECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 77864 4322111 11112221 1112456677888877777777755555
No 294
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=63.24 E-value=1.7e+02 Score=34.39 Aligned_cols=156 Identities=7% Similarity=0.017 Sum_probs=83.5
Q ss_pred CCEEEEEeC-------CCEEEEEECCCCccceEEEcCCCccee-eeeeee-cCEEEEEEcCCC--eEEEEeCCCCcEeEE
Q 003001 53 RKRVVVSTE-------ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIAL-GKYVITLSSDGS--TLRAWNLPDGQMVWE 121 (859)
Q Consensus 53 ~~~Vyvat~-------~g~l~ALd~~tG~ilWR~~l~~~~~i~-~l~~~~-~~~~V~Vs~~g~--~v~Ald~~tG~llW~ 121 (859)
++.+|+... .+.+..+|+.+. .|+..-+.+..-. ...... ++.++++||.++ .+..||..+++ |+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~--~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~ 526 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR--EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FK 526 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTT--EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCC--cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eE
Confidence 778888754 245788898876 5887643331111 111233 555666666422 69999998875 88
Q ss_pred EeccCccccCCcccccccccc-cCC-CeEEEEe----C-----CEEEEEEcCCCc----EEEEEeccCcce--eeeeEEE
Q 003001 122 SFLRGSKHSKPLLLVPTNLKV-DKD-SLILVSS----K-----GCLHAVSSIDGE----ILWTRDFAAESV--EVQQVIQ 184 (859)
Q Consensus 122 ~~~~~~~ls~~~~~~~~~~~~-~~~-~~VvV~~----~-----g~l~ald~~tG~----~~W~~~~~~~~~--~~~~~v~ 184 (859)
.-...... +.+.......+ ... +.+++++ + ..+.++|..+.+ ..|+.-...+.. ....++
T Consensus 527 ~~~~~g~~--p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~- 603 (695)
T 2zwa_A 527 DVTPKDEF--FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK- 603 (695)
T ss_dssp ECCCSSGG--GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-
T ss_pred EccCCCCC--CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-
Confidence 65432111 00111111011 212 6677763 2 468999998886 457654321111 011121
Q ss_pred eecCCeEEEEEecCC-----ceeEEEEEEcCCCceeee
Q 003001 185 LDESDQIYVVGYAGS-----SQFHAYQINAMNGELLNH 217 (859)
Q Consensus 185 ~~~~~~vyvv~~~g~-----~~~~v~ald~~tG~~~w~ 217 (859)
...++.+|++|-... ..-.+..+|+.++ .|+
T Consensus 604 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~--~W~ 639 (695)
T 2zwa_A 604 YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE--TLT 639 (695)
T ss_dssp EEETTEEEEECCBCSSCCCCTTTSEEEEETTTT--EEE
T ss_pred EeCCCEEEEECCccCCCCCCCCCeEEEEECCCC--eEE
Confidence 123388898765321 1124788998887 476
No 295
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=60.41 E-value=32 Score=40.21 Aligned_cols=140 Identities=11% Similarity=0.126 Sum_probs=73.8
Q ss_pred EEEEECCCCccceEEEcCCCcceeeeeeee--cCEEEEEEcCCC-----------eEEEEeCCCCcEeEEEeccCccccC
Q 003001 65 IASLDLRHGEIFWRHVLGINDVVDGIDIAL--GKYVITLSSDGS-----------TLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 65 l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~--~~~~V~Vs~~g~-----------~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+.++|+.+| .|+...+-+...... ... ++.++++++.+. .+..||+.+++ |+.-...+.- .
T Consensus 168 ~~~~dp~~~--~W~~~~~~P~~~~~~-av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~--w~~~~~~~~~-~ 241 (656)
T 1k3i_A 168 YTAPQPGLG--RWGPTIDLPIVPAAA-AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI--VSDRTVTVTK-H 241 (656)
T ss_dssp CCCCCTTSC--EEEEEEECSSCCSEE-EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC--BCCCEEEECS-C
T ss_pred cccCCCCCC--eeeeeccCCCCceeE-EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc--EEeCcccCCC-C
Confidence 556777777 688755443211122 123 566666665321 58889998885 5432111100 0
Q ss_pred CcccccccccccCCCeEEEEe---CCEEEEEEcCCCcEEEEEeccCc--ceeeeeEEEeecCCeEEEEEec--CC-ceeE
Q 003001 132 PLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAE--SVEVQQVIQLDESDQIYVVGYA--GS-SQFH 203 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~--~~~~~~~v~~~~~~~vyvv~~~--g~-~~~~ 203 (859)
. .... +.....++.+++.+ +..+..+|..++ .|+.-.+.+ .... .+. ...++.+|++|-. ++ ..-.
T Consensus 242 ~-~~~~-~~~~~~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R~~~-s~~-~~~dg~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 242 D-MFCP-GISMDGNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVARGYQ-SSA-TMSDGRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp C-CSSC-EEEECTTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCCSSC-EEE-ECTTSCEEEECCCCCSSSCCCC
T ss_pred C-Cccc-cccCCCCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCcccccc-ceE-EecCCeEEEEeCcccCCccccc
Confidence 0 0110 00112257777763 457999999877 688643221 1111 111 1248899988752 11 1124
Q ss_pred EEEEEcCCCceeeee
Q 003001 204 AYQINAMNGELLNHE 218 (859)
Q Consensus 204 v~ald~~tG~~~w~~ 218 (859)
+..+|+.+++ |+.
T Consensus 316 ~e~yd~~t~~--W~~ 328 (656)
T 1k3i_A 316 GEVYSPSSKT--WTS 328 (656)
T ss_dssp EEEEETTTTE--EEE
T ss_pred ceEeCCCCCc--cee
Confidence 7778998865 776
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=58.73 E-value=90 Score=36.91 Aligned_cols=188 Identities=13% Similarity=0.019 Sum_probs=84.1
Q ss_pred CCEEEEEeC-CCEEEEEECCC----CccceEEEcCCC-cceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEecc
Q 003001 53 RKRVVVSTE-ENVIASLDLRH----GEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~t----G~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~ 125 (859)
+++||+++. .+.|..+++.+ +... ..+... ....++++...++.+|++. ..+.|+.+|...+....-..
T Consensus 417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-- 492 (699)
T 1n7d_A 417 SNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-- 492 (699)
T ss_dssp TTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC--
T ss_pred cCeEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe--
Confidence 567888864 46788888754 1110 001111 0112332111233444442 34578888876443322111
Q ss_pred CccccCCcccccccccccC-CCeEEEEe---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCce
Q 003001 126 GSKHSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~~-~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~ 201 (859)
. .+.. |...+++. .+.+|+.. .++|++++.. |..+=..-... -..|..+.....++.+|++-...+
T Consensus 493 ~-~~~~-----P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~-l~~PnGlavd~~~~~LY~aD~~~~-- 562 (699)
T 1n7d_A 493 E-QGSK-----PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLH-- 562 (699)
T ss_dssp C-SSCC-----CCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESCSS-CSSCCCEEECTTTCCEEEEETTTT--
T ss_pred C-CCCC-----cceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEeCC-CCCccEEEEeccCCEEEEEecCCC--
Confidence 1 1100 10112221 35566642 2677777643 32211110000 011223332234678887653332
Q ss_pred eEEEEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 202 FHAYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 202 ~~v~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+|..+|+. |..+... +..+..+..+ -+.+.++.++|+|..++.+.+++..+|+
T Consensus 563 -~I~~~d~d-G~~~~~~-~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 563 -SISSIDVN-GGNRKTI-LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp -EEEEECSS-SSCCEEE-CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEE
T ss_pred -eEEEEccC-CCceEEE-EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCC
Confidence 57777775 3222111 1111111111 1122456788999888889888877776
No 297
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=58.49 E-value=1.7e+02 Score=30.24 Aligned_cols=190 Identities=12% Similarity=0.028 Sum_probs=90.5
Q ss_pred CCCEEEEEeC-CCEEEEEECCC---CccceEEEcCCC-cceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 52 GRKRVVVSTE-ENVIASLDLRH---GEIFWRHVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~t---G~ilWR~~l~~~-~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
.+++||+++. .+.|..+|+.+ |.. .+..+... ....+++.. .++.+++.-...+.|..+|........-..
T Consensus 40 ~~~~ly~~D~~~~~I~~~~~~g~~~~~~-~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-- 116 (316)
T 1ijq_A 40 ASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-- 116 (316)
T ss_dssp TTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--
T ss_pred CCCEEEEEECCCCcEEEEECCCCCCCcc-cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE--
Confidence 3678999876 48999999875 221 12222221 112244221 233444433445688889875333222111
Q ss_pred CccccCCccccccccccc-CCCeEEEEe--C-CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCce
Q 003001 126 GSKHSKPLLLVPTNLKVD-KDSLILVSS--K-GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~-~~~~VvV~~--~-g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~ 201 (859)
..+ ..|....++ .++.+|+.. . ++|++++. +|...=..-... -..|..+.....++.+|+.....+
T Consensus 117 -~~~-----~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~-dG~~~~~~~~~~-~~~P~gla~d~~~~~lY~~D~~~~-- 186 (316)
T 1ijq_A 117 -ENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-NGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLH-- 186 (316)
T ss_dssp -CTT-----CCEEEEEEETTTTEEEEEECSSSCEEEEEET-TSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETTTT--
T ss_pred -CCC-----CCcceEEeCCCCCEEEEEccCCCCeEEEEcC-CCCCeEEEEECC-CCCceEEEEeccCCEEEEEECCCC--
Confidence 111 001111233 246777753 2 78888885 454322211111 112334432235788997654332
Q ss_pred eEEEEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 202 FHAYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 202 ~~v~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
++..+|.. |...... ...+..+..+ -+.+.++.++|.|..++.+...+..+|+
T Consensus 187 -~I~~~d~d-g~~~~~~-~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 187 -SISSIDVN-GGNRKTI-LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp -EEEEEETT-SCSCEEE-EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred -eEEEEecC-CCceEEE-eecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 57888875 4322111 1111112221 1122456777888877788888776665
No 298
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=58.44 E-value=89 Score=36.24 Aligned_cols=107 Identities=19% Similarity=0.255 Sum_probs=62.2
Q ss_pred EEEEEECCCCccceEEEcCCCcce----eeeeee--ecC---EEEEEEcCC---------------------------Ce
Q 003001 64 VIASLDLRHGEIFWRHVLGINDVV----DGIDIA--LGK---YVITLSSDG---------------------------ST 107 (859)
Q Consensus 64 ~l~ALd~~tG~ilWR~~l~~~~~i----~~l~~~--~~~---~~V~Vs~~g---------------------------~~ 107 (859)
.|.|++. +|+.+||..++..... ..+.+. .++ .+++.+.+| ..
T Consensus 156 ~l~aY~l-dG~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~ey 234 (620)
T 2zuy_A 156 LIDAYKL-DGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEY 234 (620)
T ss_dssp EEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeE
Confidence 7899998 5999999998654210 011111 122 355544433 34
Q ss_pred EEEEeCCCCcEeEEEeccCccccC-----------C--cccccccccccCCC-eEEE-E---eCCEEEEEEcCCCc--EE
Q 003001 108 LRAWNLPDGQMVWESFLRGSKHSK-----------P--LLLVPTNLKVDKDS-LILV-S---SKGCLHAVSSIDGE--IL 167 (859)
Q Consensus 108 v~Ald~~tG~llW~~~~~~~~ls~-----------~--~~~~~~~~~~~~~~-~VvV-~---~~g~l~ald~~tG~--~~ 167 (859)
|..+|-.||+.+|......+.... + ...++ -.+++. .+++ . ....|.|+|..+|+ .+
T Consensus 235 L~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~va---yLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~ 311 (620)
T 2zuy_A 235 LTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTA---YLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKR 311 (620)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEE---CTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEE
T ss_pred EEEEcCCCcceeeecccCCCcCccccccccccccccccceeEE---ecCCCCceEEEecCcccceeEEEEEccCCceeee
Confidence 899999999999998874322100 0 00011 112222 2233 2 24679999999995 78
Q ss_pred EEEeccC
Q 003001 168 WTRDFAA 174 (859)
Q Consensus 168 W~~~~~~ 174 (859)
|++....
T Consensus 312 W~~ds~~ 318 (620)
T 2zuy_A 312 WVFDSNQ 318 (620)
T ss_dssp EEEETTS
T ss_pred eEecCCC
Confidence 9998754
No 299
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=57.98 E-value=2.4e+02 Score=31.64 Aligned_cols=191 Identities=10% Similarity=-0.006 Sum_probs=101.5
Q ss_pred CCCEEEEEeC-CCEEEEEECCCC--ccceEEEcCCCc-----ce---eeeeeeecCEEEEEEcCC-------CeEEEEeC
Q 003001 52 GRKRVVVSTE-ENVIASLDLRHG--EIFWRHVLGIND-----VV---DGIDIALGKYVITLSSDG-------STLRAWNL 113 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~tG--~ilWR~~l~~~~-----~i---~~l~~~~~~~~V~Vs~~g-------~~v~Ald~ 113 (859)
+++++|+... .+.|+.+|.++- ++.=...++..+ .. .+++. ..++ ++|+..| +.+.-+|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~-~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC-GPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE-CSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE-CCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 4667888775 588999998643 222222222100 00 01111 2333 4443322 57999999
Q ss_pred CCCcEeEEEeccCccc--cCCcccccccccccCCCeEEEEe---------------------CCEEEEEEcCCCcEEEEE
Q 003001 114 PDGQMVWESFLRGSKH--SKPLLLVPTNLKVDKDSLILVSS---------------------KGCLHAVSSIDGEILWTR 170 (859)
Q Consensus 114 ~tG~llW~~~~~~~~l--s~~~~~~~~~~~~~~~~~VvV~~---------------------~g~l~ald~~tG~~~W~~ 170 (859)
+|++++=++....... .-+...-+ ++.+++.+ +.+|..+|..+|+++-+.
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-------~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNL-------PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEET-------TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEccCCCCccccceEEECC-------CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999986666442211 00111111 34455543 589999999999888888
Q ss_pred eccCcceeeeeEEE--eecCCeEEEEEe-----cCCceeEEEEEEcCCCceeeeeeeeccc------------------C
Q 003001 171 DFAAESVEVQQVIQ--LDESDQIYVVGY-----AGSSQFHAYQINAMNGELLNHETAAFSG------------------G 225 (859)
Q Consensus 171 ~~~~~~~~~~~~v~--~~~~~~vyvv~~-----~g~~~~~v~ald~~tG~~~w~~~v~~~~------------------~ 225 (859)
..+.....+..+.. ...+..+|+++- -. . .|..+....|+......+..+. .
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls-s--~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS-S--SIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC-E--EEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC-c--eEEEEEecCCceeEEEEEeCCCccccccccccccccccCCC
Confidence 77533333444433 235667887664 32 2 2443333345422222221111 1
Q ss_pred ccCceEEe-cCcEEEEEECCCCeEEEEEee
Q 003001 226 FVGDVALV-SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 226 ~s~~~~~v-~~~~lv~~d~~~~~l~v~~L~ 254 (859)
....+.+- ++..+++.+...+++.+.++.
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 11122222 345777888888889998875
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=55.00 E-value=2.2e+02 Score=30.28 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=18.6
Q ss_pred CCEEEEEeCCCEEEEEECCCCc
Q 003001 53 RKRVVVSTEENVIASLDLRHGE 74 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ 74 (859)
++++||+...|.|..+| .+|+
T Consensus 39 dG~l~V~e~~g~I~~~d-~~G~ 59 (354)
T 3a9g_A 39 GGRYLVTERPGRLVLIS-PSGK 59 (354)
T ss_dssp TTEEEEEETTTEEEEEC-SSCE
T ss_pred CCeEEEEeCCCEEEEEe-CCCc
Confidence 67899999999999998 5786
No 301
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=52.74 E-value=2.2e+02 Score=29.70 Aligned_cols=187 Identities=12% Similarity=0.039 Sum_probs=89.3
Q ss_pred CCEEEEEeC-CCEEEEEECCCCcc-ceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 53 RKRVVVSTE-ENVIASLDLRHGEI-FWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~tG~i-lWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
+++||.++- .+.|..+++..+.. .+-..-.- ....+++..-.++.++++ ...+.+..+++.......-.. ..+
T Consensus 46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l-~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---~~~ 121 (318)
T 3sov_A 46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL-LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW---QEL 121 (318)
T ss_dssp GTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSC
T ss_pred CCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe---CCC
Confidence 578888864 57888898876642 22211110 111244222123344443 334678888874322221111 111
Q ss_pred cCCccccccccccc-CCCeEEEEe---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEE
Q 003001 130 SKPLLLVPTNLKVD-KDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (859)
Q Consensus 130 s~~~~~~~~~~~~~-~~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ 205 (859)
. .|....++ ..+.+|+.. .++|++++. +|..+-..-... -..|..+.....++.+|+.-...+ ++.
T Consensus 122 ~-----~P~giavdp~~g~ly~td~~~~~~I~r~~~-dG~~~~~~~~~~-l~~Pnglavd~~~~~lY~aD~~~~---~I~ 191 (318)
T 3sov_A 122 D-----QPRAIALDPSSGFMYWTDWGEVPKIERAGM-DGSSRFIIINSE-IYWPNGLTLDYEEQKLYWADAKLN---FIH 191 (318)
T ss_dssp S-----SEEEEEEEGGGTEEEEEECSSSCEEEEEET-TSCSCEEEECSS-CSCEEEEEEETTTTEEEEEETTTT---EEE
T ss_pred C-----CccEEEEeCCCCEEEEEecCCCCEEEEEEc-CCCCeEEEEECC-CCCccEEEEeccCCEEEEEECCCC---EEE
Confidence 0 01011222 135666653 468888875 343322221111 112333432235788887654333 577
Q ss_pred EEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 206 QINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
.+|.. |...... . ...+..+ -+.+.++.++|.|..++.+...+..+|+
T Consensus 192 ~~d~d-G~~~~~~--~-~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 192 KSNLD-GTNRQAV--V-KGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETT-SCSCEEE--E-CSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEcCC-CCceEEE--e-cCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 78874 3222111 1 1112221 1123456677888888888888877766
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=51.78 E-value=3.1e+02 Score=31.03 Aligned_cols=152 Identities=11% Similarity=0.122 Sum_probs=74.0
Q ss_pred CCEEEEEeCC-CEEEEEECCCCccceEEEcCCCc--ceeeeee-------eecCEEEEEEcCCC-------eEEEEeCCC
Q 003001 53 RKRVVVSTEE-NVIASLDLRHGEIFWRHVLGIND--VVDGIDI-------ALGKYVITLSSDGS-------TLRAWNLPD 115 (859)
Q Consensus 53 ~~~Vyvat~~-g~l~ALd~~tG~ilWR~~l~~~~--~i~~l~~-------~~~~~~V~Vs~~g~-------~v~Ald~~t 115 (859)
++.||++.+. +.|..||+++|.+.=-....... ....+.. ...++.++++...+ .++.++...
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~ 230 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA 230 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT
T ss_pred CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC
Confidence 4678888775 67888999888765222221110 1122322 22344565554332 377776544
Q ss_pred -CcEeE---EEeccCccccCCcccccccccccC-CCeEEEE--eCCEEEEEEcC-------CCcEEEE------------
Q 003001 116 -GQMVW---ESFLRGSKHSKPLLLVPTNLKVDK-DSLILVS--SKGCLHAVSSI-------DGEILWT------------ 169 (859)
Q Consensus 116 -G~llW---~~~~~~~~ls~~~~~~~~~~~~~~-~~~VvV~--~~g~l~ald~~-------tG~~~W~------------ 169 (859)
|...+ ...+. ....+. ...++. ++.+|+. .++.|+++|.+ +|.. |+
T Consensus 231 ~G~~~~~~~~~~v~--~~~~p~-----giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~-~tp~~~~~~g~~~~ 302 (496)
T 3kya_A 231 DGTFDDRSDIQLIA--AYKQCN-----GATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS-WDPIVKNNPNTFKQ 302 (496)
T ss_dssp TSCCSTTSCEEEEE--EESCCC-----CEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC-CCCBGGGCTTTEEE
T ss_pred CCceeecccceeec--cCCCce-----EEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee-ecccccccccccce
Confidence 55432 01111 110000 112232 4677774 48899999998 6653 31
Q ss_pred -EeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCce
Q 003001 170 -RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (859)
Q Consensus 170 -~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~ 214 (859)
+..+.... +..+.....++.+|+.- .+...+..+.+|..+|..
T Consensus 303 l~~~~~~~~-p~~ia~~p~G~~lYvaD-~~~h~I~kid~dg~~~~~ 346 (496)
T 3kya_A 303 LFTIADPSW-EFQIFIHPTGKYAYFGV-INNHYFMRSDYDEIKKEF 346 (496)
T ss_dssp EEECSSSSC-CEEEEECTTSSEEEEEE-TTTTEEEEEEEETTTTEE
T ss_pred eEecCCCCC-ceEEEEcCCCCEEEEEe-CCCCEEEEEecCCCccee
Confidence 12222111 33443233445578654 444444444466666643
No 303
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=51.47 E-value=2.5e+02 Score=30.01 Aligned_cols=183 Identities=8% Similarity=-0.011 Sum_probs=80.2
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
...++++.. +.|..+++..++.. ..+.......++.....++.++++ ..++.|+.+++..+...- -.... +
T Consensus 87 ~~~l~~~~~-~~I~~i~~~~~~~~--~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~-~-- 158 (386)
T 3v65_B 87 EPVLLFANR-IDIRQVLPHRSEYT--LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTG-L-- 158 (386)
T ss_dssp CCEEEEECB-SCEEEECTTSCCCE--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE--EECSS-C--
T ss_pred cceeEeecC-ccceeeccCCCcEE--EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE--EEeCC-C--
Confidence 344555554 56888888766542 222222112233211234445544 345688888887654221 11111 1
Q ss_pred Cccccccccccc-CCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 132 PLLLVPTNLKVD-KDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 132 ~~~~~~~~~~~~-~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
..+.+.+++ ..+.+|+.. .+++..++...+...-.... ....|..+.-...++.+|+..... ..++..++
T Consensus 159 ---~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~ly~td~~~--~~~I~r~~ 231 (386)
T 3v65_B 159 ---ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGN--TPRIEASS 231 (386)
T ss_dssp ---SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEECSS--SCEEEEEE
T ss_pred ---CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCeEEEeccCC--CCEEEEEe
Confidence 001011222 145666643 56777777654332222111 111244443122467888754332 12577777
Q ss_pred cCCCceeeeeeeecccCccCc--eEEe-cCcEEEEEECCCCeEEEEEee
Q 003001 209 AMNGELLNHETAAFSGGFVGD--VALV-SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~--~~~v-~~~~lv~~d~~~~~l~v~~L~ 254 (859)
+. |...... ...++..+ +.+- .++.++|+|..++.+.+.++.
T Consensus 232 ~d-G~~~~~~---~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 232 MD-GSGRRII---ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp TT-SCSCEEE---ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CC-CCCcEEE---EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 64 4322111 11112111 1111 244555666665556555543
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=51.13 E-value=1.9e+02 Score=31.21 Aligned_cols=104 Identities=9% Similarity=0.116 Sum_probs=59.4
Q ss_pred EEEEEeCCCEEEEEEC-------CCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCC-----CCcEeEEE
Q 003001 55 RVVVSTEENVIASLDL-------RHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-----DGQMVWES 122 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~-------~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~-----tG~llW~~ 122 (859)
.+||..++|.+.-+.. .+++++.+..++.. +.++.+-...+.+|++-.+..|+.+|+. +++++...
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq--~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~ 222 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ--TEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA 222 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC--EEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB
T ss_pred EEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC--cceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe
Confidence 4888888888766433 35577888777654 4455222245788888876679999965 57777655
Q ss_pred eccCccccCCcccccccccccCCCeEEEEe--CCEEEEEEcC
Q 003001 123 FLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSI 162 (859)
Q Consensus 123 ~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~--~g~l~ald~~ 162 (859)
.. +.+..+.+-+......++.+.+++.+ ++.+..+|.+
T Consensus 223 ~~--g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 223 DG--RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp SS--SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cC--CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 32 22211211111000112223566654 6677777764
No 305
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=49.46 E-value=2.1e+02 Score=28.37 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=83.9
Q ss_pred EEEEEeCCCEEEEEECCCCccce---EEEcCCC-cceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccc
Q 003001 55 RVVVSTEENVIASLDLRHGEIFW---RHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG~ilW---R~~l~~~-~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~l 129 (859)
.||+++. +.|..+|...+...+ ...+..+ ....++.....++.++++. .++.|+.+|...+...-.. .. .+
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~--~~-~~ 78 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--RQ-DL 78 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--CT-TC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE--EC-CC
Confidence 3566654 478888876554321 1111111 0112331112344555443 4568999998655432111 11 11
Q ss_pred cCCcccccccccccC-CCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEE
Q 003001 130 SKPLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (859)
Q Consensus 130 s~~~~~~~~~~~~~~-~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~a 206 (859)
..+.....+. .+.+++.. ++++..++.......-.... ....|..+.....++.+|+..... ...++..
T Consensus 79 -----~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~ 150 (267)
T 1npe_A 79 -----GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT--GLVNPRGIVTDPVRGNLYWTDWNR-DNPKIET 150 (267)
T ss_dssp -----CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTTEEEEEECCS-SSCEEEE
T ss_pred -----CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC--CCCCccEEEEeeCCCEEEEEECCC-CCcEEEE
Confidence 0011112332 46777753 67888888653322211111 111244443222368889765431 1124666
Q ss_pred EEcCCCceeeeeeeecccCccCc-eEEe--cCcEEEEEECCCCeEEEEEeec
Q 003001 207 INAMNGELLNHETAAFSGGFVGD-VALV--SSDTLVTLDTTRSILVTVSFKN 255 (859)
Q Consensus 207 ld~~tG~~~w~~~v~~~~~~s~~-~~~v--~~~~lv~~d~~~~~l~v~~L~s 255 (859)
+++. |...-.. . ...+..+ -+.+ .++.+++.|...+.+.++++..
T Consensus 151 ~~~d-g~~~~~~--~-~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 151 SHMD-GTNRRIL--A-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp EETT-SCCCEEE--E-CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred EecC-CCCcEEE--E-ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 6763 4332111 1 1112111 1112 2456677777777777777754
No 306
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=49.25 E-value=4.1e+02 Score=31.80 Aligned_cols=183 Identities=11% Similarity=0.056 Sum_probs=74.7
Q ss_pred EEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcE--eEEEeccCccccC
Q 003001 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQM--VWESFLRGSKHSK 131 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~l--lW~~~~~~~~ls~ 131 (859)
.++++... .|..++...++. ...+.......++.....++.+|++ ...+.|+.++...... .++.-+.. .+
T Consensus 397 ~Ll~an~~-~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-~l-- 470 (791)
T 3m0c_C 397 YLFFTNRH-EVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DI-- 470 (791)
T ss_dssp EEEEECBS-SEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SC--
T ss_pred cccccccc-ceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-CC--
Confidence 45555544 466777665543 2222222122233222223445544 3345777777653211 11211111 11
Q ss_pred CcccccccccccC-CCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 132 PLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 132 ~~~~~~~~~~~~~-~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
..+.+.+++. .+.+|+.. .++|.+++.......--... ....|..++.-...+.+|+.. .|. .-++..++
T Consensus 471 ---~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~--~l~~P~gIaVDp~~g~LYwtD-~g~-~~~I~~~~ 543 (791)
T 3m0c_C 471 ---QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTD-WGT-PAKIKKGG 543 (791)
T ss_dssp ---SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEE-CSS-SCEEEEEE
T ss_pred ---CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC--CCCCcceEEEecCCCCEEEec-CCC-CCeEEEEe
Confidence 0011112231 34666653 67788877654332211111 111244443222457788654 332 11456666
Q ss_pred cCCCceeeeeeeecccCccCce-EEe--cCcEEEEEECCCCeEEEEEee
Q 003001 209 AMNGELLNHETAAFSGGFVGDV-ALV--SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~-~~v--~~~~lv~~d~~~~~l~v~~L~ 254 (859)
+. |..+-.. ....+..+. +.+ .++.|+|+|..++.+.++++.
T Consensus 544 ~d-G~~~~~l---v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 544 LN-GVDIYSL---VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp TT-SCCEEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cC-CCceEEE---EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 53 4332111 111222111 111 245566666666666666654
No 307
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=48.49 E-value=95 Score=27.09 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=38.1
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEecc
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA 173 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~~ 173 (859)
.+...+.+..+| .+..++ .++.+|......+.- . ...+.+..||.|..+| .+|+++|.....
T Consensus 18 sg~y~l~~q~Dg-NLvly~--~~~~vW~ant~~~~~--~------------~~~L~l~~dGnLvL~d-~~~~~vWss~t~ 79 (105)
T 4h3o_A 18 VEPYHFIMQDDC-NLVLYD--HSTSTWASNTEIGGK--S------------GCSAVLQSDGNFVVYD-SSGRSLWASHST 79 (105)
T ss_dssp ETTEEEEECTTS-CEEEEE--TTEEEEECCCCCTTC--C------------SCEEEECTTSCEEEEC-TTCCEEEECCCC
T ss_pred ECCEEEEECCCC-eEEEEE--CCEEEEEecCCCCCC--c------------cEEEEEeCCccEEEEC-CCcEEEEEecCC
Confidence 466666666655 677776 478899876544321 0 1122223578887777 578899986543
No 308
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=48.00 E-value=88 Score=27.65 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=36.9
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
+...+.-..+|.|.-.+...|.++|........ ....+.+..+ |.+.-+|. +|+.+|+...
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~---------~~~~l~l~~d-GNLVl~d~-~~~~iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRG---------QHCFMRLGHS-GELDITDD-RLNTVFVSNT 84 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSC---------SSCEEEECTT-SCEEEECT-TSCEEEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCC---------cCEEEEEeCC-CcEEEECC-CCCEEEECCC
Confidence 334555567777777776568999986543210 1113333443 46777775 6789998654
No 309
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=46.75 E-value=2.5e+02 Score=28.55 Aligned_cols=66 Identities=8% Similarity=0.088 Sum_probs=37.1
Q ss_pred cCCCEEEEEeCC-----CEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcC--------------------
Q 003001 51 TGRKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD-------------------- 104 (859)
Q Consensus 51 ~~~~~Vyvat~~-----g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~-------------------- 104 (859)
++++.|+.++.. ..|+.+|..+|+..--... +. +..+.. +.++.+++.+..
T Consensus 68 pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 144 (347)
T 2gop_A 68 PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL 144 (347)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence 455666655432 3588899888875432222 21 222211 234456665422
Q ss_pred ------CCeEEEEeCCCCcEe
Q 003001 105 ------GSTLRAWNLPDGQMV 119 (859)
Q Consensus 105 ------g~~v~Ald~~tG~ll 119 (859)
...|+.||..+|+.+
T Consensus 145 ~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 145 GFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp -----CEEEEEEEETTTTEEE
T ss_pred ccccCccceEEEEECCCCeEE
Confidence 257999999999873
No 310
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=45.62 E-value=1.1e+02 Score=26.89 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=38.8
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEec
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~ 172 (859)
.+...+.+..+| .+..++...|..+|......... ...+.+..+|.|..+|. +|.++|+...
T Consensus 23 ~g~~~L~~q~dG-NLvL~~~~~~~~vWssnt~~~~~---------------~~~l~l~~dGNLVl~d~-~~~~iW~S~t 84 (113)
T 3mez_B 23 TRDYSLVMRDDC-NLVLTKGSKTNIVWESGTSGRGQ---------------HCFMRLGHSGELDITDD-RLNTVFVSNT 84 (113)
T ss_dssp ETTEEEEECTTS-CEEEEETTTTEEEEECCCTTSCS---------------SCEEEECTTSCEEEECT-TSCEEEECSC
T ss_pred cCCEEEEEcCCC-EEEEEECCCCEEEEECCcccCCc---------------CEEEEEeCCCcEEEECC-CCCEEEECCC
Confidence 456666666654 67778876689999965432110 11222235777777774 6789998654
No 311
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=44.90 E-value=4.3e+02 Score=30.76 Aligned_cols=65 Identities=6% Similarity=-0.000 Sum_probs=40.2
Q ss_pred ccCCCEEEEEeCC---------CEEEEEECCCCccceEEEcCC-Ccceeeee-eeecCEEEEEEcCCCeEEEEeCCCCcE
Q 003001 50 KTGRKRVVVSTEE---------NVIASLDLRHGEIFWRHVLGI-NDVVDGID-IALGKYVITLSSDGSTLRAWNLPDGQM 118 (859)
Q Consensus 50 ~~~~~~Vyvat~~---------g~l~ALd~~tG~ilWR~~l~~-~~~i~~l~-~~~~~~~V~Vs~~g~~v~Ald~~tG~l 118 (859)
+++++.|+.++.. +.+.-+|.++|+..- +.. ...+.... .+.|+.+++++ ++.|+.||..+|+.
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~---l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---EERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPS 144 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCC
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE---cccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCce
Confidence 4566667777664 677789999998542 322 21121111 13566677764 35899999998874
Q ss_pred e
Q 003001 119 V 119 (859)
Q Consensus 119 l 119 (859)
.
T Consensus 145 ~ 145 (740)
T 4a5s_A 145 Y 145 (740)
T ss_dssp E
T ss_pred E
Confidence 3
No 312
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Probab=43.53 E-value=1.4e+02 Score=26.06 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=30.7
Q ss_pred EeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 59 STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 59 at~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
-..+|.+.-.+. |.++|....... .....+.+..+ |.+..+| +|+.+|+...
T Consensus 25 ~~~dgnlvl~~~--~~~vW~sn~~~~---------~~~~~l~l~~~-GNLvl~d--~~~~~W~S~~ 76 (112)
T 1xd5_A 25 IQNDCNLVLYDN--NRAVWASGTNGK---------ASGCVLKMQND-GNLVIYS--GSRAIWASNT 76 (112)
T ss_dssp ECTTSCEEEEET--TEEEEECCCTTS---------CSSEEEEECTT-SCEEEEE--TTEEEEECCC
T ss_pred EcCCCcEEEEEC--CEEEEeCCCcCC---------CCCEEEEEeCC-CCEEEEc--CCEEEEECCc
Confidence 344555555564 789998654321 01123444544 4677788 7899999653
No 313
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=42.35 E-value=2.9e+02 Score=28.11 Aligned_cols=112 Identities=8% Similarity=0.092 Sum_probs=64.1
Q ss_pred eeeeeeee-cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE--eCCEEEEEEcCC
Q 003001 87 VDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSID 163 (859)
Q Consensus 87 i~~l~~~~-~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~--~~g~l~ald~~t 163 (859)
+.++.... ++.+++|+...+.|+.+|+. |+++.+..+.+. .+.+-+ ....++.+++. .+++++.++..+
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~---~D~EGI----a~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV---KDLETI----EYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC---SSEEEE----EECSTTEEEEEETTTTEEEEEEECT
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC---CChHHe----EEeCCCEEEEEECCCCcEEEEEcCC
Confidence 44553222 34455567667899999997 999988877542 122222 22335665554 377888888665
Q ss_pred CcEEEEEeccC-------cceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 164 GEILWTRDFAA-------ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 164 G~~~W~~~~~~-------~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
....|...... .+...+.+.....++.+|++.-.+. ..++.++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p--~~i~~~~ 150 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP--IEVYKVN 150 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS--EEEEEEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC--ceEEEEc
Confidence 55456432221 1122355544345668888654432 3577777
No 314
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=41.91 E-value=95 Score=27.09 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=33.5
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEecc
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~ 125 (859)
-++--.+|.|.-.+ .+.++|......+. ...-.+.+..+| .+..+|. +|+.+|.....
T Consensus 22 ~l~~q~DgNLvly~--~~~~vW~ant~~~~--------~~~~~L~l~~dG-nLvL~d~-~~~~vWss~t~ 79 (105)
T 4h3o_A 22 HFIMQDDCNLVLYD--HSTSTWASNTEIGG--------KSGCSAVLQSDG-NFVVYDS-SGRSLWASHST 79 (105)
T ss_dssp EEEECTTSCEEEEE--TTEEEEECCCCCTT--------CCSCEEEECTTS-CEEEECT-TCCEEEECCCC
T ss_pred EEEECCCCeEEEEE--CCEEEEEecCCCCC--------CccEEEEEeCCc-cEEEECC-CcEEEEEecCC
Confidence 33444555555555 46789986654331 111234455544 6777875 68999986543
No 315
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=41.68 E-value=3.8e+02 Score=29.19 Aligned_cols=103 Identities=5% Similarity=-0.008 Sum_probs=52.3
Q ss_pred CCCEEEEEeCC-----CEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEecc
Q 003001 52 GRKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLR 125 (859)
Q Consensus 52 ~~~~Vyvat~~-----g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~ 125 (859)
+++.||++... ..+..+++ +|...++..+.......++.....++.++++. ..++|+.+|+.++...-.....
T Consensus 189 ~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 189 EADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp TSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence 35569998762 24666774 56655544443211112331122245555543 4578999999877652112222
Q ss_pred CccccCCcccccccccccCCCe-EEEE--eCCEEEEEEcC
Q 003001 126 GSKHSKPLLLVPTNLKVDKDSL-ILVS--SKGCLHAVSSI 162 (859)
Q Consensus 126 ~~~ls~~~~~~~~~~~~~~~~~-VvV~--~~g~l~ald~~ 162 (859)
.... |.+...+.++. +++. .+++|++++..
T Consensus 268 ~~~~-------P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 268 DSGW-------EFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSSC-------CEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCc-------ceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 1111 11113333454 7775 37888887644
No 316
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=41.60 E-value=32 Score=30.34 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=30.4
Q ss_pred eccCCceEEEEEEcCCCCCCcCCCCCCCcEEEEEEEEceeeeEEEEEeecCC
Q 003001 703 KYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGA 754 (859)
Q Consensus 703 KYLNPNl~~v~t~~~~~~~~~~~~~~~~~~l~vyliD~VTG~il~s~~h~~~ 754 (859)
-||+= ++.|--.+. .+.++|.++|.-||+++|+..+.+.
T Consensus 30 A~I~n-vlsV~F~~~------------~~~vTItItNe~TG~~VYs~~~s~p 68 (101)
T 3sd2_A 30 AILSN-ILNVSFGRA------------KDYAIITVTNKATGEIVHSKTYHNT 68 (101)
T ss_dssp EEETT-EEEEEESSC------------CSCEEEEEEETTTCCEEEEEEESSC
T ss_pred EEEeC-EEEEEeccC------------CCcEEEEEEECCCCcEEEEEeccCC
Confidence 46665 555555443 4799999999999999999998883
No 317
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=41.27 E-value=3.4e+02 Score=28.52 Aligned_cols=187 Identities=16% Similarity=0.064 Sum_probs=85.3
Q ss_pred CCCEEEEEe-CCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVST-EENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat-~~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.+++||+++ ..+.|..+++..+.. +..+... ....+++..-.++.++++ ...+.+...+.. |+..-.. .. ..
T Consensus 83 ~~~~ly~~D~~~~~I~r~~~~g~~~--~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-~~-~~ 157 (349)
T 3v64_C 83 RRELVFWSDVTLDRILRANLNGSNV--EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-LW-QS 157 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-EC-TT
T ss_pred cccEEEEEeccCCceEEEecCCCCc--eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEE-Ee-CC
Confidence 356777776 457788888765542 1211111 111244222123344433 334578888764 4322111 11 11
Q ss_pred ccCCccccccccccc-CCCeEEEEe--C-CEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 129 HSKPLLLVPTNLKVD-KDSLILVSS--K-GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 129 ls~~~~~~~~~~~~~-~~~~VvV~~--~-g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
+ ..|....++ .++.+|+.. + ++|++++.+ |..+-..- ...-..|..+.....++.+|++-...+ ++
T Consensus 158 l-----~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~-~~~~~~PnGla~d~~~~~lY~aD~~~~---~I 227 (349)
T 3v64_C 158 L-----EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHH---VI 227 (349)
T ss_dssp C-----SCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEESC-CSSCSCEEEEEEETTTTEEEEEETTTT---EE
T ss_pred C-----CCcceEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEEEE-ECCCCCcceEEEeCCCCEEEEEECCCC---EE
Confidence 1 001111223 145666653 3 778888754 43221110 011111333432235788897654333 57
Q ss_pred EEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 205 YQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+|.. |...... ....+..+ -+.+.++.++|.|..++.+..++-.+|+
T Consensus 228 ~~~~~d-G~~~~~~---~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 228 ERANLD-GSHRKAV---ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEETT-SCSCEEE---ECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEeCC-CCceEEE---EeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence 788865 4322111 11112221 1112456677888777777777655555
No 318
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=39.34 E-value=3.9e+02 Score=28.70 Aligned_cols=190 Identities=13% Similarity=0.037 Sum_probs=86.1
Q ss_pred CCEEEEEeC-CCEEEEEECCCCc--cceEEEcCCC-cceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCc
Q 003001 53 RKRVVVSTE-ENVIASLDLRHGE--IFWRHVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (859)
Q Consensus 53 ~~~Vyvat~-~g~l~ALd~~tG~--ilWR~~l~~~-~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~ 127 (859)
+++||+++. .+.|..+++..+. ......+... ....++++. .++.+++.-...+.|+..|+..+...-... .
T Consensus 123 ~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~---~ 199 (400)
T 3p5b_L 123 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---E 199 (400)
T ss_dssp TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE---C
T ss_pred cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe---C
Confidence 677888864 5778888775422 1122222211 112244221 133344433334577777765433221111 1
Q ss_pred cccCCcccccccccccC-CCeEEEEe---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeE
Q 003001 128 KHSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (859)
Q Consensus 128 ~ls~~~~~~~~~~~~~~-~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~ 203 (859)
.+.. |....++. .+.+|+.. .+++.+++.+ |..+-..-... -..|..+.....++.+|++-.... +
T Consensus 200 ~~~~-----P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~~~~-l~~P~glavd~~~~~lY~aD~~~~---~ 269 (400)
T 3p5b_L 200 NGSK-----PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLH---S 269 (400)
T ss_dssp SSCC-----EEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEECSS-CSCEEEEEEETTTTEEEEEETTTT---E
T ss_pred CCCC-----cceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEEECC-CCceEEEEEEeCCCEEEEEECCCC---E
Confidence 1100 00112221 45666643 3567777754 33221111111 012333432235788887643332 5
Q ss_pred EEEEEcCCCceeeeeeeecccCccCc-eEEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 204 AYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~~~~s~~-~~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
+..+|.. |....... ..+..+..+ -+-+.++.++|.|..++.+...+..+|+
T Consensus 270 I~~~d~d-G~~~~~~~-~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 270 ISSIDVN-GGNRKTIL-EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEETT-SCCCEEEE-ECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCC
T ss_pred EEEEeCC-CCccEEEE-eCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCC
Confidence 7778864 44333221 111222221 1223566777888887888888766665
No 319
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=36.90 E-value=4.2e+02 Score=28.41 Aligned_cols=183 Identities=11% Similarity=0.052 Sum_probs=77.1
Q ss_pred EEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcE--eEEEeccCccccC
Q 003001 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQM--VWESFLRGSKHSK 131 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~l--lW~~~~~~~~ls~ 131 (859)
.++++. .+.|..+|...++..+. +.......++.....++.+|++ ..++.|+.++...+.. ..+.-... .+
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~--~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~~-- 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DI-- 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEE--ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-SC--
T ss_pred eeEEec-cceeEEEccCCcceeEe--ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-CC--
Confidence 455554 46788999877654433 2222222234222234455554 3456788888754221 11111111 11
Q ss_pred CcccccccccccC-CCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 132 PLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 132 ~~~~~~~~~~~~~-~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
..+.+.+++. .+.+|+.. .+++..++.+.+...-..... ...|..+.--...+.+|+.. .|. ..++..++
T Consensus 159 ---~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~--~~~P~~iavdp~~g~ly~td-~~~-~~~I~~~~ 231 (400)
T 3p5b_L 159 ---QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTD-WGT-PAKIKKGG 231 (400)
T ss_dssp ---SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS--SCCEEEEEEETTTTEEEEEE-CSS-SCCEEEEE
T ss_pred ---CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC--CCCcceEEEecccCeEEEEe-CCC-CCEEEEEe
Confidence 0010112232 45566652 567777776544332222111 11233343112467788644 231 11366666
Q ss_pred cCCCceeeeeeeecccCccCc--eEEe-cCcEEEEEECCCCeEEEEEee
Q 003001 209 AMNGELLNHETAAFSGGFVGD--VALV-SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~--~~~v-~~~~lv~~d~~~~~l~v~~L~ 254 (859)
+. |...... ...++..+ ..+- .++.++|+|..++.+.+.++.
T Consensus 232 ~d-G~~~~~~---~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 232 LN-GVDIYSL---VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp TT-SCSCEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CC-CCccEEE---EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 53 3322111 01111111 1111 244556666666666666654
No 320
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=36.21 E-value=47 Score=33.83 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=20.1
Q ss_pred CCEEEEEeCCCEEEEEEC-CCCccceEE
Q 003001 53 RKRVVVSTEENVIASLDL-RHGEIFWRH 79 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~-~tG~ilWR~ 79 (859)
++.||+. .+|.|+..++ .++...|.-
T Consensus 51 ~G~LYaV-~~G~Ly~~~~~t~~~~~W~~ 77 (236)
T 1tl2_A 51 GGELYGV-LNDKIYKGTPPTHDNDNWMG 77 (236)
T ss_dssp TSCEEEE-ETTEEEEESCCCSTTCCHHH
T ss_pred CccEEEE-eCCeEEEECCCCCCcccccc
Confidence 6778888 8888999988 456677764
No 321
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=36.06 E-value=4.5e+02 Score=28.44 Aligned_cols=102 Identities=11% Similarity=0.010 Sum_probs=52.0
Q ss_pred cCCCeEEEEeCCCC--------cEeEEEeccCccccCCcccccccccccCC-CeEEE-E-eCCEEEEEEcCCCcEEEEEe
Q 003001 103 SDGSTLRAWNLPDG--------QMVWESFLRGSKHSKPLLLVPTNLKVDKD-SLILV-S-SKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 103 ~~g~~v~Ald~~tG--------~llW~~~~~~~~ls~~~~~~~~~~~~~~~-~~VvV-~-~~g~l~ald~~tG~~~W~~~ 171 (859)
+.++.|+.||..++ +.+........-- .....+ ....+ +.+++ . .||.+...|..+|.......
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v----~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG-GMVIDM----KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG-GSEEEE----EECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCC-CceEEE----EECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence 34678999998876 4444444321100 011111 11112 34444 3 48999999999986655443
Q ss_pred ccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceee
Q 003001 172 FAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLN 216 (859)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w 216 (859)
..... +..+..+..+..+++.+.+| .+..+|.. |+...
T Consensus 190 ~~~~~--v~~v~wspdg~~lasgs~dg----~v~iwd~~-~~~~~ 227 (434)
T 2oit_A 190 PSTVA--VTSVCWSPKGKQLAVGKQNG----TVVQYLPT-LQEKK 227 (434)
T ss_dssp CGGGC--EEEEEECTTSSCEEEEETTS----CEEEECTT-CCEEE
T ss_pred CCCCc--eeEEEEcCCCCEEEEEcCCC----cEEEEccC-Ccccc
Confidence 21111 22232233444555544444 37778887 65543
No 322
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=35.83 E-value=1.9e+02 Score=25.30 Aligned_cols=56 Identities=14% Similarity=0.290 Sum_probs=33.8
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
.+.-..+|.+.-.| .|.++|......+ .....+.+..+ |.+..+|. +|+.+|+...
T Consensus 23 ~l~~~~dGnlvl~~--~~~~vW~sn~~~~---------~~~~~l~l~~d-GNLVl~~~-~~~~~W~S~t 78 (110)
T 3a0c_A 23 RLIMQGDCNFVLYD--SGKPVWASNTGGL---------GSGCRLTLHNN-GNLVIYDQ-SNRVIWQTKT 78 (110)
T ss_dssp EEEECTTSCEEEEE--TTEEEEECCCTTS---------CSSCEEEECTT-SCEEEECT-TCCEEEECCC
T ss_pred EEEEcCCCcEEEEE--CCEEEEECCCCCC---------CCcEEEEEeCC-CCEEEECC-CCcEEEecCC
Confidence 33345566666667 4899998664322 01123444544 46777885 6899999654
No 323
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=35.78 E-value=73 Score=28.03 Aligned_cols=59 Identities=17% Similarity=0.396 Sum_probs=35.8
Q ss_pred cCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEec
Q 003001 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 95 ~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~ 172 (859)
+...+.+..+| .+.-+| .|+.+|......+.. ...+.+..+|.|..+|. +|+++|+...
T Consensus 20 ~~~~l~~~~dG-nlvl~~--~~~~vW~sn~~~~~~---------------~~~l~l~~dGNLVl~~~-~~~~~W~S~t 78 (110)
T 3a0c_A 20 PSYRLIMQGDC-NFVLYD--SGKPVWASNTGGLGS---------------GCRLTLHNNGNLVIYDQ-SNRVIWQTKT 78 (110)
T ss_dssp TTEEEEECTTS-CEEEEE--TTEEEEECCCTTSCS---------------SCEEEECTTSCEEEECT-TCCEEEECCC
T ss_pred CCEEEEEcCCC-cEEEEE--CCEEEEECCCCCCCC---------------cEEEEEeCCCCEEEECC-CCcEEEecCC
Confidence 44455555554 577777 489999876532210 11222335777877774 7899998543
No 324
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=35.52 E-value=1.2e+02 Score=35.88 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=36.6
Q ss_pred CCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcce-eeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeee
Q 003001 145 DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 145 ~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (859)
.+.+|+.. .++|.+++.. |..+-..-.....+ .|..+. ..++.+|++...++ +|..+|..+|+.+-..
T Consensus 551 ~~~LY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~~~~P~gla--vd~~~lywtd~~~~---~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 551 SGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLA--VFEDKVFWTDIINE---AIFSANRLTGSDVNLL 621 (699)
T ss_dssp TCCEEEEETTTTEEEEECSS-SSCCEEECCCSSSCSSCCCCE--EETTEEEEECSTTT---CEEEEETTTEEEEECC
T ss_pred CCEEEEEecCCCeEEEEccC-CCceEEEEecCCcCCCceEeE--EECCEEEEEeCCCC---eEEEEEccCCCceEEe
Confidence 35666653 6688888864 33222221111111 122332 35668887664433 4888898888876444
No 325
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=34.28 E-value=5.9e+02 Score=29.29 Aligned_cols=230 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcC-CCeEEEEeCCCCcEeEEEeccCccccCCcc
Q 003001 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-GSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (859)
Q Consensus 56 Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~-g~~v~Ald~~tG~llW~~~~~~~~ls~~~~ 134 (859)
+..-+..+.|..+|...+...=......-....++.....++.++++.. ++.++.++. +|...++.-+..+.
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~-~g~~~~~~v~~~~~------ 83 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF-NKTESVQNVVVSGL------ 83 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSC------
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEc-cCCCceEEEEeCCC------
Q ss_pred cccccccccC-CCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcCC
Q 003001 135 LVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (859)
Q Consensus 135 ~~~~~~~~~~-~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~t 211 (859)
..|.+.+++. .+.+|+.. .+++..++.+.+...--.. ..-..|..++--...+.+|+........+....+|-..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~--~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW--QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe--CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Q ss_pred CceeeeeeeecccCccCceEEecCcEEEEEECCCCeEEEEEeecCeeeEEEEeecCcCCCCCCceEEeecCCccceEEEe
Q 003001 212 GELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKI 291 (859)
Q Consensus 212 G~~~w~~~v~~~~~~s~~~~~v~~~~lv~~d~~~~~l~v~~L~sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 291 (859)
-+.+-...+..|.++ ++|...+.|++.+-..+. +..+.+ +......+...++..+|.+..
T Consensus 162 ~~~l~~~~~~~P~Gl-------------ald~~~~~LY~aD~~~~~--I~~~~~-----dG~~~~~~~~~~~~~P~gi~~ 221 (619)
T 3s94_A 162 RFIIINSEIYWPNGL-------------TLDYEEQKLYWADAKLNF--IHKSNL-----DGTNRQAVVKGSLPHPFALTL 221 (619)
T ss_dssp CEEEECSSCSSEEEE-------------EEETTTTEEEEEETTTCC--EEEESS-----SCCEEC---------CCCEEE
T ss_pred eEEEEeCCCCCCcEE-------------EEEccCCEEEEEeCCCCe--EEEecC-----CCCccEEEEeCCCCCceEEEE
Q ss_pred cCcEEEEEEecCCcEEEEEeecC
Q 003001 292 NNYKLFIRLTSEDKLEVVHKVDH 314 (859)
Q Consensus 292 ~~~~~l~~~~~~~~~~v~~~~~~ 314 (859)
.+..+++-...++.+.+++.+.+
T Consensus 222 ~~~~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 222 FEDILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSSEEEEECTTTCSEEEEESSSC
T ss_pred eCCEEEEecCCCCEEEEEECCCC
No 326
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=34.25 E-value=66 Score=28.68 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=30.6
Q ss_pred eccCCceEEEEEEcCCCCCCcCCCCCCCcEEEEEEEEceeeeEEEEEeecCCC
Q 003001 703 KYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQ 755 (859)
Q Consensus 703 KYLNPNl~~v~t~~~~~~~~~~~~~~~~~~l~vyliD~VTG~il~s~~h~~~~ 755 (859)
-|++=|++.|--.++ -..++|.+.|.-+|+++|+..+....
T Consensus 33 A~id~~~L~I~F~~~------------~~~vtItI~~~~tG~iVY~~~v~~~~ 73 (108)
T 3d33_A 33 VFTDGYLLTLKNASP------------DRDMTIRITDMAKGGVVYENDIPEVQ 73 (108)
T ss_dssp EEEETTEEEEEESSC------------CSEEEEEEEETTTCCEEEEEEECGGG
T ss_pred EEEECCEEEEEECCc------------CCCEEEEEEECCCCcEEEEEeecCCC
Confidence 344556555555444 36999999999999999999997753
No 327
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Probab=33.39 E-value=2e+02 Score=25.10 Aligned_cols=57 Identities=23% Similarity=0.458 Sum_probs=34.6
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcEEEEEe
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~~W~~~ 171 (859)
.+...+.+..+| .+.-++. |+.+|........ ....+. ..+|.|..+| +|.++|+-.
T Consensus 18 ~~~~~L~~~~dg-nlvl~~~--~~~vW~sn~~~~~----------------~~~~l~l~~~GNLvl~d--~~~~~W~S~ 75 (112)
T 1xd5_A 18 EGGYLFIIQNDC-NLVLYDN--NRAVWASGTNGKA----------------SGCVLKMQNDGNLVIYS--GSRAIWASN 75 (112)
T ss_dssp ETTEEEEECTTS-CEEEEET--TEEEEECCCTTSC----------------SSEEEEECTTSCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEcCCC-cEEEEEC--CEEEEeCCCcCCC----------------CCEEEEEeCCCCEEEEc--CCEEEEECC
Confidence 344455555554 4556765 7899987643210 112233 3588888888 788999954
No 328
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=31.07 E-value=1.7e+02 Score=31.62 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=43.1
Q ss_pred cCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCC
Q 003001 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP 114 (859)
Q Consensus 51 ~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~ 114 (859)
...+.+|+.|..|.++-.|..||..+.+.++..+.-+....-...++++.|... |.|.....+
T Consensus 269 ~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~-GqVl~v~v~ 331 (365)
T 2xzh_A 269 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK-GQVLSVCVE 331 (365)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETT-CEEEEEEEC
T ss_pred ccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCC-CEEEEEEEC
Confidence 356789999999999999999999999999876622211111134566666543 356555443
No 329
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=30.54 E-value=6.8e+02 Score=28.84 Aligned_cols=143 Identities=8% Similarity=-0.050 Sum_probs=62.4
Q ss_pred EEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEc-CCCeEEEEeCCCCcEeEEEeccCccccCCc
Q 003001 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPL 133 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~-~g~~v~Ald~~tG~llW~~~~~~~~ls~~~ 133 (859)
.|+++ ..+.|..+|..+.+..-...+..-....++.....++.+|++. .++.++.++...+... .-...+ +
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g-~---- 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFG-L---- 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSS-C----
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--EEEeCC-C----
Confidence 34444 5567888998766542222221111122332222345555543 3567888877543222 111111 1
Q ss_pred cccccccccc-CCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEcC
Q 003001 134 LLVPTNLKVD-KDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (859)
Q Consensus 134 ~~~~~~~~~~-~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~ 210 (859)
..|.+.+++ ..+.+|+.. .+++..++.+.+...=-.. ..-..|..++--...+.+|+.. .|. ..++..+++.
T Consensus 80 -~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~--~~l~~P~~iavdp~~G~lY~tD-~g~-~~~I~r~~~d 154 (628)
T 4a0p_A 80 -DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW--KDLDSPRALALDPAEGFMYWTE-WGG-KPKIDRAAMD 154 (628)
T ss_dssp -SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC--SSCCCEEEEEEETTTTEEEEEE-CSS-SCEEEEEETT
T ss_pred -CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe--CCCCCcccEEEccCCCeEEEeC-CCC-CCEEEEEeCC
Confidence 001111222 135666653 5777777764332211110 1111244443222467788643 231 1246666654
No 330
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=30.23 E-value=4.7e+02 Score=26.93 Aligned_cols=178 Identities=12% Similarity=0.149 Sum_probs=83.3
Q ss_pred ccccccccEeEEEeccCc-eeeeeeeeeccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCC---cceeeeeeeecCEE
Q 003001 23 LYEDQVGLMDWHQQYIGK-VKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN---DVVDGIDIALGKYV 98 (859)
Q Consensus 23 l~edq~G~~dW~~~~vG~-~~~~~f~~~~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~---~~i~~l~~~~~~~~ 98 (859)
+|....|-.-|+...... .....+.....+++.+|++++.|.|+. ..||-.-|+...... ..+..+.....+.+
T Consensus 58 i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~ 135 (327)
T 2xbg_A 58 LMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSA 135 (327)
T ss_dssp EEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEE
T ss_pred EEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCE
Confidence 455444545687754321 101112222223467888888887765 357777999865321 12222312233444
Q ss_pred EEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEE-eCCEEEEEEcCCCcEEEEEeccCcce
Q 003001 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV 177 (859)
Q Consensus 99 V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~-~~g~l~ald~~tG~~~W~~~~~~~~~ 177 (859)
++++..++..+. .||-.-|+....... .. +.. .....++.+++. .+|.++.-+ +.|-..|+........
T Consensus 136 ~~~~~~g~v~~S---~DgG~tW~~~~~~~~--~~--~~~--~~~~~~~~~~~~g~~G~~~~S~-d~gG~tW~~~~~~~~~ 205 (327)
T 2xbg_A 136 EMITNVGAIYRT---KDSGKNWQALVQEAI--GV--MRN--LNRSPSGEYVAVSSRGSFYSTW-EPGQTAWEPHNRTTSR 205 (327)
T ss_dssp EEEETTCCEEEE---SSTTSSEEEEECSCC--CC--EEE--EEECTTSCEEEEETTSSEEEEE-CTTCSSCEEEECCSSS
T ss_pred EEEeCCccEEEE---cCCCCCCEEeecCCC--cc--eEE--EEEcCCCcEEEEECCCcEEEEe-CCCCCceeECCCCCCC
Confidence 444544433333 456667987643221 11 111 011224455554 366666554 3334667654221111
Q ss_pred eeeeEEEeecCCeEEEEEecCCceeEEEEEEcCCCceeeee
Q 003001 178 EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (859)
Q Consensus 178 ~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (859)
....+. ...++.+|+++..| .+. +...+|-..|+.
T Consensus 206 ~~~~~~-~~~~g~~~~~~~~G----~~~-~s~~D~G~tW~~ 240 (327)
T 2xbg_A 206 RLHNMG-FTPDGRLWMIVNGG----KIA-FSDPDNSENWGE 240 (327)
T ss_dssp CEEEEE-ECTTSCEEEEETTT----EEE-EEETTEEEEECC
T ss_pred ccceeE-ECCCCCEEEEeCCc----eEE-EecCCCCCeeEe
Confidence 122332 23566778766544 122 232354556765
No 331
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=28.99 E-value=4.6e+02 Score=26.41 Aligned_cols=56 Identities=20% Similarity=0.111 Sum_probs=32.5
Q ss_pred CCEEEEEECCCCccceEEEcCCCcceeeeee-eecCEEEEEEcCC----CeEEEEeCCCCcEeEEEe
Q 003001 62 ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDG----STLRAWNLPDGQMVWESF 123 (859)
Q Consensus 62 ~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~-~~~~~~V~Vs~~g----~~v~Ald~~tG~llW~~~ 123 (859)
.+.|...|..+|+. ++ +. . +..+.. +.|+.+++++..+ ..|+.||..+|+..--..
T Consensus 42 ~~~l~~~d~~~~~~--~~-l~-~--~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~ 102 (347)
T 2gop_A 42 ENTIVIENLKNNAR--RF-IE-N--ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE 102 (347)
T ss_dssp EEEEEEEETTTCCE--EE-EE-S--CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeCCCCce--EE-cc-c--CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc
Confidence 56788889888874 22 21 1 112211 2455666765432 358999998887654433
No 332
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=28.19 E-value=5.4e+02 Score=26.90 Aligned_cols=143 Identities=9% Similarity=-0.027 Sum_probs=64.3
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
...++++... .|..+++...+. ...+.......++.....++.++++ ..++.|+.++...+...--. ... +
T Consensus 44 ~~~ll~~~~~-~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~--~~~-~-- 115 (349)
T 3v64_C 44 EPVLLFANRI-DIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV--STG-L-- 115 (349)
T ss_dssp CCEEEEECBS-CEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CSS-C--
T ss_pred CceeEeeccc-ceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE--eCC-C--
Confidence 3456666554 477788754432 3333222112233111234445444 34567888887655422111 111 1
Q ss_pred Cccccccccccc-CCCeEEEEe--CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEE
Q 003001 132 PLLLVPTNLKVD-KDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (859)
Q Consensus 132 ~~~~~~~~~~~~-~~~~VvV~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald 208 (859)
..+.+.+++ .++.+|+.. .+++..++.+.....--.. .....|..+.-...++.+|+..... ..++..++
T Consensus 116 ---~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--~~l~~P~~iavdp~~g~ly~td~~~--~~~I~r~~ 188 (349)
T 3v64_C 116 ---ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTIYWTDWGN--TPRIEASS 188 (349)
T ss_dssp ---SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--TTCSCEEEEEEETTTTEEEEEECSS--SCEEEEEE
T ss_pred ---CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe--CCCCCcceEEEecCcCeEEEeccCC--CCEEEEEe
Confidence 000011223 145666653 5678888865433222111 1111244443122467888754332 12577777
Q ss_pred cC
Q 003001 209 AM 210 (859)
Q Consensus 209 ~~ 210 (859)
+.
T Consensus 189 ~d 190 (349)
T 3v64_C 189 MD 190 (349)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 333
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=27.33 E-value=5.4e+02 Score=26.63 Aligned_cols=183 Identities=10% Similarity=0.009 Sum_probs=77.2
Q ss_pred EEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEE-cCCCeEEEEeCCCCcE-eEEEeccCccccCC
Q 003001 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQM-VWESFLRGSKHSKP 132 (859)
Q Consensus 55 ~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs-~~g~~v~Ald~~tG~l-lW~~~~~~~~ls~~ 132 (859)
.++++. .+.|..+|+..+...-...+..-....++.....++.++++ ..++.|+.+++..+.. .+..... +
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~---l--- 78 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG---L--- 78 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC---C---
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC---C---
Confidence 355554 45678888866542222222111111122111123344443 3456788888765532 1221110 0
Q ss_pred ccccccccccc-CCCeEEEE--eCCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEEEEEEc
Q 003001 133 LLLVPTNLKVD-KDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (859)
Q Consensus 133 ~~~~~~~~~~~-~~~~VvV~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v~ald~ 209 (859)
..+.+.+++ ..+.+|+. ..+++..++........-.... ...|..+.--..++.+|+... +. ..++..+++
T Consensus 79 --~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~--~~~P~giavdp~~g~ly~td~-~~-~~~I~r~~~ 152 (318)
T 3sov_A 79 --LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE--LDQPRAIALDPSSGFMYWTDW-GE-VPKIERAGM 152 (318)
T ss_dssp --SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEEGGGTEEEEEEC-SS-SCEEEEEET
T ss_pred --CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCC--CCCccEEEEeCCCCEEEEEec-CC-CCEEEEEEc
Confidence 000011222 24566665 3567777776543322222111 112333331224678887543 21 125777776
Q ss_pred CCCceeeeeeeecccCccCc--eEEe-cCcEEEEEECCCCeEEEEEee
Q 003001 210 MNGELLNHETAAFSGGFVGD--VALV-SSDTLVTLDTTRSILVTVSFK 254 (859)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~--~~~v-~~~~lv~~d~~~~~l~v~~L~ 254 (859)
. |...... ...++..+ ..+- .++.++|.|..++.+.+.++.
T Consensus 153 d-G~~~~~~---~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 153 D-GSSRFII---INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp T-SCSCEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCeEEE---EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 3 4322111 11112111 1111 244556666666666666654
No 334
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=26.49 E-value=8e+02 Score=28.36 Aligned_cols=102 Identities=10% Similarity=-0.007 Sum_probs=53.4
Q ss_pred CCEEEEEeCCCEEEEEECCCCccceEEEcCCCc--cee--e--eee-eecCEEEEEEcCC--------CeEEEEeCCCCc
Q 003001 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND--VVD--G--IDI-ALGKYVITLSSDG--------STLRAWNLPDGQ 117 (859)
Q Consensus 53 ~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~--~i~--~--l~~-~~~~~~V~Vs~~g--------~~v~Ald~~tG~ 117 (859)
++.+++.+ +|.|...|.++|+. ++.+.... ... . +.. +.++.+++.+... +.++.||..+|+
T Consensus 27 dg~~~~~~-~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~ 103 (740)
T 4a5s_A 27 DHEYLYKQ-ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ 103 (740)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred CCcEEEEc-CCcEEEEECCCCce--EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc
Confidence 44444444 89999999999986 23333321 011 1 111 2344455533311 467899999998
Q ss_pred EeEEEeccCccccCCcccccccccccCCCeEEE-EeCCEEEEEEcCCCcE
Q 003001 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEI 166 (859)
Q Consensus 118 llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~~~g~l~ald~~tG~~ 166 (859)
..- +..... . ...+ ....++.-++ ..++.|+..|..+|+.
T Consensus 104 ~~~---l~~~~~--~-~~~~---~~SPdG~~la~~~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 104 LIT---EERIPN--N-TQWV---TWSPVGHKLAYVWNNDIYVKIEPNLPS 144 (740)
T ss_dssp ECC---SSCCCT--T-EEEE---EECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred EEE---cccCCC--c-ceee---EECCCCCEEEEEECCeEEEEECCCCce
Confidence 652 222110 0 0111 1122443333 3688898888888764
No 335
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=25.47 E-value=4e+02 Score=26.94 Aligned_cols=62 Identities=8% Similarity=0.027 Sum_probs=33.7
Q ss_pred EEEEEcCCCeEEEEeCCCCcE--eEEEeccCccccCCcccccccccccCCCeEEE-E-eCCEEEEEEcCCCc
Q 003001 98 VITLSSDGSTLRAWNLPDGQM--VWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGE 165 (859)
Q Consensus 98 ~V~Vs~~g~~v~Ald~~tG~l--lW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV-~-~~g~l~ald~~tG~ 165 (859)
.++.++.++.|+.||..+|+. +.........+ ......+ ..++..++ . .|+.+...|..+|+
T Consensus 27 ~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V-~~v~~~~-----~~~~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPV-WQVAWAH-----PMYGNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCE-EEEEECC-----GGGSSCEEEEETTSCEEEECCSSSC
T ss_pred EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccE-EEEEeCC-----CCCCCEEEEEECCCEEEEEECCCCc
Confidence 344355667999999998864 33333332221 0111111 11233444 3 38889888888874
No 336
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=25.35 E-value=6.7e+02 Score=27.07 Aligned_cols=99 Identities=20% Similarity=0.187 Sum_probs=61.4
Q ss_pred CCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccC
Q 003001 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (859)
Q Consensus 52 ~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~ 131 (859)
+++.++++ .+|.|..+|.++-...+++..-.. .+..+. .....+++++. +|.|+.||..+|... .+...+
T Consensus 96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~-~v~~i~-~~~p~~av~~~-dG~L~v~dl~~~~~~---~~~~~V--- 165 (388)
T 1xip_A 96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEK-PVFQLK-NVNNTLVILNS-VNDLSALDLRTKSTK---QLAQNV--- 165 (388)
T ss_dssp ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSS-CEEEEE-ECSSEEEEEET-TSEEEEEETTTCCEE---EEEESE---
T ss_pred CCCEEEEE-cCCcEEEEEchhhhccCccceeec-ceeeEE-ecCCCEEEEEC-CCCEEEEEccCCccc---cccCCc---
Confidence 47788888 778999999888776666543221 122332 22334555455 569999999999874 222211
Q ss_pred CcccccccccccCCCeEEEEeCCEEEEEEcCCCcE
Q 003001 132 PLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI 166 (859)
Q Consensus 132 ~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~ 166 (859)
..+ .+..+|.++...||.+..++..+++.
T Consensus 166 --s~v----~WSpkG~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 166 --TSF----DVTNSQLAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp --EEE----EECSSEEEEEETTSCEEEEEEETTEE
T ss_pred --eEE----EEcCCceEEEEcCCcEEEEcCCCccc
Confidence 111 22334544445799999998888775
No 337
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=25.30 E-value=3.1e+02 Score=24.22 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=29.9
Q ss_pred CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 61 EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 61 ~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
.+|.+.-.|. |.++|......+ .....+.+..+ |.+.-+| .+|+.+|+...
T Consensus 38 ~dgnlvly~~--~~~vW~sn~~~~---------~~~~~l~l~~d-GNLVl~d-~~~~~lW~S~~ 88 (119)
T 1b2p_A 38 TDCNLVLYDN--NNPIWATNTGGL---------GNGCRAVLQPD-GVLVVIT-NENVTVWQSPV 88 (119)
T ss_dssp TTSCEEEEET--TEEEEECCCTTS---------CSSCEEEECTT-SCEEEEC-TTCCEEEECSC
T ss_pred cCCCEEEEEC--CEEEEeCCCccC---------CCceEEEEccC-CEEEEEe-CCCcEEEcCCC
Confidence 3444544564 889998654322 11123444544 4677777 47899998653
No 338
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=23.39 E-value=8.2e+02 Score=27.42 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=34.0
Q ss_pred CCCEEEEEeCCC-------EEEEEECCC-Cccce---EEEcCCCcceeeeeeeecCEEEEE-EcCCCeEEEEeCC
Q 003001 52 GRKRVVVSTEEN-------VIASLDLRH-GEIFW---RHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLP 114 (859)
Q Consensus 52 ~~~~Vyvat~~g-------~l~ALd~~t-G~ilW---R~~l~~~~~i~~l~~~~~~~~V~V-s~~g~~v~Ald~~ 114 (859)
+++.+|+++..+ .++.++++. |+..+ ++.+.......++.....++.+++ ....+.|+-+|..
T Consensus 203 ~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 203 EAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 345699998875 377887554 66553 122221111113322222444544 3345689999997
No 339
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.30 E-value=2.5e+02 Score=31.52 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=41.6
Q ss_pred ccCCCEEEEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeC
Q 003001 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNL 113 (859)
Q Consensus 50 ~~~~~~Vyvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~ 113 (859)
+...+.+|+.|..|.++-.|..||..+.+..+..+.-+...+-...+|++.|... |.|.....
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~-GqVl~v~v 329 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK-GQVLSVCV 329 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETT-CEEEEEEE
T ss_pred cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccC-ceEEEEEE
Confidence 3457789999999999999999999999999876621111101124455555433 35555443
No 340
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=22.38 E-value=9.7e+02 Score=27.93 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCcEEE--EEeccCcceeeeeEEEeecCCeEEEEEecC-CceeEEEEEEcCCC
Q 003001 153 KGCLHAVSSIDGEILW--TRDFAAESVEVQQVIQLDESDQIYVVGYAG-SSQFHAYQINAMNG 212 (859)
Q Consensus 153 ~g~l~ald~~tG~~~W--~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g-~~~~~v~ald~~tG 212 (859)
...++.+|..+|...+ +.-.+........+ +-..++.+|+.+..+ ....+++.+|..++
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~-~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~ 355 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV-QMHGTSHLVILTNEGGAVNHKLLIAPRGQP 355 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTTCCEEE-EEETTTEEEEEECTTTCTTCEEEEEETTST
T ss_pred CceEEEEECCCCCCCceeEEeecCCCCceEEE-eeeeCCEEEEEeCCCCCCCcEEEEEcCCCc
Confidence 4467888887763223 22111111000111 002377788777654 34567899998764
No 341
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=21.71 E-value=1.4e+02 Score=26.60 Aligned_cols=52 Identities=13% Similarity=0.364 Sum_probs=30.4
Q ss_pred EEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEe
Q 003001 101 LSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRD 171 (859)
Q Consensus 101 Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~ 171 (859)
+..+| .+.-++. |+.+|......+.. ...+.+..+|.|.-+| .+|+++|+-.
T Consensus 36 ~~~dg-nlvly~~--~~~vW~sn~~~~~~---------------~~~l~l~~dGNLVl~d-~~~~~lW~S~ 87 (119)
T 1b2p_A 36 MQTDC-NLVLYDN--NNPIWATNTGGLGN---------------GCRAVLQPDGVLVVIT-NENVTVWQSP 87 (119)
T ss_dssp ECTTS-CEEEEET--TEEEEECCCTTSCS---------------SCEEEECTTSCEEEEC-TTCCEEEECS
T ss_pred EecCC-CEEEEEC--CEEEEeCCCccCCC---------------ceEEEEccCCEEEEEe-CCCcEEEcCC
Confidence 34444 4555664 78888866432110 1222233577777777 5789999864
No 342
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=21.21 E-value=9.7e+02 Score=27.47 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=88.2
Q ss_pred CCCEEEEEeC-CCEEEEEECCCCccceEEEcCCC-cceeeeeee-ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCcc
Q 003001 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (859)
Q Consensus 52 ~~~~Vyvat~-~g~l~ALd~~tG~ilWR~~l~~~-~~i~~l~~~-~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ 128 (859)
.+++||+++- .+.|..+++..+. .+..+... ....+++.- .++.+++.-...+.|...++. |... ..+....
T Consensus 47 ~~~~lywtD~~~~~I~r~~~~g~~--~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~--~~l~~~~ 121 (628)
T 4a0p_A 47 TDNRIYWTDISLKTISRAFMNGSA--LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHR--QVLVWKD 121 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-STTC--EEEECSS
T ss_pred CCCEEEEEECCCCeEEEEECCCCC--cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcE--EEEEeCC
Confidence 4678888864 5788888875432 23333322 112345221 234444433334678888764 4321 1111111
Q ss_pred ccCCccccccccccc-CCCeEEEEe---CCEEEEEEcCCCcEEEEEeccCcceeeeeEEEeecCCeEEEEEecCCceeEE
Q 003001 129 HSKPLLLVPTNLKVD-KDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (859)
Q Consensus 129 ls~~~~~~~~~~~~~-~~~~VvV~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~~~~~~~vyvv~~~g~~~~~v 204 (859)
+.. |....++ ..+.+|+.. .++|.+++.+.....=-.. .-..|..+.....++.+|++-...+ .+
T Consensus 122 l~~-----P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~---~~~~P~GlalD~~~~~LY~aD~~~~---~I 190 (628)
T 4a0p_A 122 LDS-----PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYWTDLDTN---LI 190 (628)
T ss_dssp CCC-----EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SCSSEEEEEEETTTTEEEEEETTTT---EE
T ss_pred CCC-----cccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC---CCCCcceEEEccccCEEEEEECCCC---EE
Confidence 100 1011223 145666653 4577777653332111111 1111333432234688887654333 57
Q ss_pred EEEEcCCCceeeeeeeecccCccCce-EEecCcEEEEEECCCCeEEEEEeecCe
Q 003001 205 YQINAMNGELLNHETAAFSGGFVGDV-ALVSSDTLVTLDTTRSILVTVSFKNRK 257 (859)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~~~~s~~~-~~v~~~~lv~~d~~~~~l~v~~L~sg~ 257 (859)
..+|...+.. +. + ...+..+. +-+.++.++|.|..++.+...+..+|+
T Consensus 191 ~~~d~dG~~~--~v-~--~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 191 ESSNMLGLNR--EV-I--ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEETTSCSC--EE-E--EECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEcCCCCce--EE-e--eccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 7788754433 11 1 11222211 112346777888877888888876665
No 343
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=20.71 E-value=3.9e+02 Score=23.06 Aligned_cols=60 Identities=20% Similarity=0.438 Sum_probs=35.0
Q ss_pred ecCEEEEEEcCCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccCCCeEEEEeCCEEEEEEcCCCcEEEEEec
Q 003001 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDF 172 (859)
Q Consensus 94 ~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~~~~~ls~~~~~~~~~~~~~~~~~VvV~~~g~l~ald~~tG~~~W~~~~ 172 (859)
.+...+.+..+| .+..++. |+.+|......... ...+.+..+|.|..+|. +|.++|+...
T Consensus 18 ~g~~~L~~q~dG-nLvly~~--~~~vW~snt~~~~~---------------~~~l~l~~dGNLvl~~~-~~~~~W~S~t 77 (109)
T 3dzw_A 18 NGRYVFIMQEDC-NLVLYDV--DKPIWATNTGGLDR---------------RCHLSMQSDGNLVVYSP-RNNPIWASNT 77 (109)
T ss_dssp ETTEEEEECTTS-CEEEEET--TEEEEECCCTTSSS---------------SCEEEECTTSCEEEECT-TSCEEEECCC
T ss_pred CCCEEEEEcCCC-cEEEEeC--CEEEEECCcccCCC---------------CEEEEEeCCCCEEEECC-CCCEEEECCC
Confidence 355555565554 5666776 78999865432100 11222235777777774 6789997543
No 344
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=20.34 E-value=2.5e+02 Score=24.32 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=31.0
Q ss_pred EEEeCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCEEEEEEcCCCeEEEEeCCCCcEeEEEec
Q 003001 57 VVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (859)
Q Consensus 57 yvat~~g~l~ALd~~tG~ilWR~~l~~~~~i~~l~~~~~~~~V~Vs~~g~~v~Ald~~tG~llW~~~~ 124 (859)
+.-..+|.+.-.+. |.++|........ ....+.+..+ |.+..+|. +|..+|+...
T Consensus 23 L~~q~dGnLvly~~--~~~vW~snt~~~~---------~~~~l~l~~d-GNLvl~~~-~~~~~W~S~t 77 (109)
T 3dzw_A 23 FIMQEDCNLVLYDV--DKPIWATNTGGLD---------RRCHLSMQSD-GNLVVYSP-RNNPIWASNT 77 (109)
T ss_dssp EEECTTSCEEEEET--TEEEEECCCTTSS---------SSCEEEECTT-SCEEEECT-TSCEEEECCC
T ss_pred EEEcCCCcEEEEeC--CEEEEECCcccCC---------CCEEEEEeCC-CCEEEECC-CCCEEEECCC
Confidence 33345555555664 7899986543210 1123344444 46777775 5789997553
Done!