Query 003002
Match_columns 858
No_of_seqs 244 out of 438
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1msw_D DNA-directed RNA polyme 100.0 3E-167 1E-171 1494.8 50.6 670 136-857 26-748 (883)
2 3spa_A Mtrpol, DNA-directed RN 100.0 3E-155 1E-159 1391.9 49.3 663 132-854 294-992 (1134)
3 3q23_A Virion RNA polymerase; 97.8 0.0001 3.5E-09 87.0 11.9 305 455-778 338-704 (1118)
4 4dfk_A DNA polymerase I, therm 15.8 44 0.0015 38.7 1.2 136 659-844 301-436 (540)
5 1d2v_A Myeloperoxidase; heme-p 14.8 35 0.0012 30.9 0.0 11 679-689 9-19 (104)
6 3pv8_A DNA polymerase I; DNA p 14.3 38 0.0013 39.7 0.1 123 676-843 364-486 (592)
7 2kfn_A Klenow fragment of DNA 14.3 1.4E+02 0.0048 34.8 4.9 136 659-844 365-500 (605)
8 1iv0_A Hypothetical protein; r 13.7 51 0.0018 29.5 0.8 35 660-694 43-81 (98)
9 3bhw_A Uncharacterized protein 12.7 1.3E+02 0.0044 30.4 3.5 29 322-350 137-165 (209)
10 1nu0_A Hypothetical protein YQ 9.6 68 0.0023 30.4 0.2 18 668-685 53-70 (138)
No 1
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=100.00 E-value=3.2e-167 Score=1494.78 Aligned_cols=670 Identities=28% Similarity=0.470 Sum_probs=575.9
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-hccCccccccc
Q 003002 136 AKYY-MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ-DKWKHMTYAPY 213 (858)
Q Consensus 136 ~~~~-~l~eRQ~~lE~~~~~~a~~~~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~~-~~~~r~~y~p~ 213 (858)
..|+ .|++||++||++++++|++||++.+++++++|+++++|++++++.+|+++|+++|+++++..+ +.+.++.|+||
T Consensus 26 ~~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~~~~~~~~ 105 (883)
T 1msw_D 26 DHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQF 105 (883)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCChhhHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 3455 568999999999999999999999999999999999999999999999999999999998776 35668999999
Q ss_pred cccCCchhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhhccCCCCCCCCCCCCCCChHHhHH
Q 003002 214 FNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293 (858)
Q Consensus 214 L~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~~~~ 293 (858)
|+.|+||++|+|||+++|+++++ ++++++++++.+||++||+|++++.+.++.++++.. +
T Consensus 106 L~~l~~e~lA~iti~~~l~~~~~-~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~-------------------~ 165 (883)
T 1msw_D 106 LQEIKPEAVAYITIKTTLACLTS-ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKK-------------------N 165 (883)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHH-CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHH-------------------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------------H
Confidence 99999999999999999999987 467899999999999999999999988776543321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hC----CCCCCCCCHHHHHHHHHHHHHHHHHH-ccccCCCCCCCCCCCCccCce
Q 003002 294 EQEKLKKRVTSLIKKQKLQQVRGIV-KG----HVDSKPWGQDALVKVGCRLIQLLMET-AYIQPPVDQLGDSPPDIRPAF 367 (858)
Q Consensus 294 ~~~~~r~~~~~~~~~~~~~~~~~~~-~~----~~~~~~W~~~~~~kvG~~Li~~l~~~-~~i~~~~~~~~~~~~~~~paF 367 (858)
..+.++++.+...++...+.+.... .. ..++.+|+..++++||++|+++|+++ +.|+++..
T Consensus 166 ~~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~------------- 232 (883)
T 1msw_D 166 VEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ------------- 232 (883)
T ss_dssp TSHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC-------------
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceecc-------------
Confidence 1233344443334443334433321 21 36689999999999999999999995 66644221
Q ss_pred eEEeeecccccC-CCeEEEEEEeCHHHHHHHHhcc---ccccCCCCCeeeCCcCcccCCCcccccc---CcceeecCchh
Q 003002 368 VHTLKSFTKEAL-KGRRYGVIECDPLVRKGLEKTG---RHMIIPYMPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGAR 440 (858)
Q Consensus 368 ~h~~~~~~~~~~-~~k~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpP~pW~~~~~GGYl~~---~~~~~R~~~~~ 440 (858)
..+ +++++|+|++||.+++.+.+.. ..+.+.+|||||||+||+++.+||||+. +..++|++..
T Consensus 233 ---------~~~~~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~~- 302 (883)
T 1msw_D 233 ---------NAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSK- 302 (883)
T ss_dssp -----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSST-
T ss_pred ---------ccCCCCceeeEEEeCHHHHHHHhhcccchhhcCCCCCceeeCCccCCCCCCCCccCCCcccchhhcccCH-
Confidence 112 2578899999999999997542 3355569999999999999999999974 3456776532
Q ss_pred hHHHHHHcCCCCChhhHHHHHHhhcCcccEechHHHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHH
Q 003002 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA-SGGCLAGLVDQEDVPLPEKPNTDD--ETEIKKWKW 517 (858)
Q Consensus 441 ~q~~~l~~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~~~d--~~~~~~wk~ 517 (858)
.++++..+++++.||++||+||+|||+||++||+||+++|+ +|+++++||+..+.|+|++|++.+ ++++++|++
T Consensus 303 ---~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~k~ 379 (883)
T 1msw_D 303 ---KALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKR 379 (883)
T ss_dssp ---THHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTH
T ss_pred ---HHHHhccccchHHHHHHHHHhccCCeEecHHHHHHHHHHHhhcCCcccCCCCcCcCCCCCCCCccccCHHHHHHHHH
Confidence 44566677899999999999999999999999999999999 999999999998899999987543 678899999
Q ss_pred HHHHHHHHHhHhhhhhhhHHHHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCCcchhhhhhccccCccCccchhH
Q 003002 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597 (858)
Q Consensus 518 ~~~~~~~~~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLG~~Gl~ 597 (858)
.++.+++.++++||+||+++++|++|++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++||+
T Consensus 380 ~~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~Gl~ 458 (883)
T 1msw_D 380 AAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYY 458 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecccCCCCcCCCCC-CCCCCcchHHHHHHHhccCCccChhHHH
Confidence 999999999999999999999999999999988999999999999999995 9999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHhhHHHHHHhccCCcCcchhhhcCCchHHHHHHHHHHHHhhcCCCCCCcccccc
Q 003002 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677 (858)
Q Consensus 598 WLkIhlAN~~G~G~DK~s~~eRi~wv~~n~~~I~~sA~~Pl~~~~wW~~Ad~P~QfLA~C~El~~a~~s~~P~~y~S~lP 677 (858)
|||||+||+| |+||+||+||++||++|+++|++||+|||+ .+||++||+||||||+||||++|+++|+ +|+||||
T Consensus 459 WLkIhlAN~~--G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~lP 533 (883)
T 1msw_D 459 WLKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCSLP 533 (883)
T ss_dssp HHHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEECCC
T ss_pred HHHHHHHHhc--CCCcCCHHHHHHHHHHHHHHHHHHhcCccc-chHHHcCCcHHHHHHHHHHHHHHHhCCC--ccccccc
Confidence 9999999999 899999999999999999999999999999 5899999999999999999999999876 9999999
Q ss_pred ccccCCCchhhHHHHhhCCcccccccccCCCCCCcchhHHHHHHHHHHHHhhhcCCCCC-------Cc------------
Q 003002 678 VHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPAT-------YP------------ 738 (858)
Q Consensus 678 VhqDGSCNGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~V~~~l~~da~~~~~~-------~~------------ 738 (858)
|||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|+.++.+. .+
T Consensus 534 VhqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~~~ 613 (883)
T 1msw_D 534 LAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGT 613 (883)
T ss_dssp EEEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCH
T ss_pred cccCCCCcHHHHHHHHhcChhhhhHhCCCCCCCCcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhcccch
Confidence 99999999999999999999999999999999999999999999999999998775321 00
Q ss_pred chHHHHHhhccCccccccceeeeeecccchhhHHHHHHHHHhhccCCCCchhh----hhhhhhHHHHHHHHHHHHHHHHH
Q 003002 739 YASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKL----FGAACYAAKTTLTALGEMFEAAR 814 (858)
Q Consensus 739 ~~~~a~~l~~~i~RKvVKqtVMT~vYGvT~~Ga~~qI~~~L~~~g~~~d~~~~----~~~a~yla~~i~~ai~e~f~~A~ 814 (858)
....+++|.++|+||+|||||||+|||||++|+++||.++|++.++..++... ..+|+|+|++||+||+++|++|+
T Consensus 614 ~~l~~~~l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~a~ 693 (883)
T 1msw_D 614 KALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAV 693 (883)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHhcCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11246788999999999999999999999999999999999875432211122 37899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC------------CCeEEEEcCCCCeEeeeccCCCceeee
Q 003002 815 SIMSWLGECAKVIASE------------NQAVRWTTPLGLPVVQPYHQLGRHLVM 857 (858)
Q Consensus 815 ~im~WL~~~a~~i~~~------------~~pV~WtTPlGlpVvQ~Y~k~~~~~v~ 857 (858)
.||+||++||++|+++ +.||.||||+||||+|||++.++++|.
T Consensus 694 ~im~wL~~~a~~i~~~v~~~~~~~~~~~~~pv~W~TPlGlpV~Q~Y~~~~~~~V~ 748 (883)
T 1msw_D 694 EAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLN 748 (883)
T ss_dssp HHHHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEE
T ss_pred HHHHHHHHHHHHHHhhcccccccccccCCCeEEEECCCCCEEEEEecCCCceEEE
Confidence 9999999999999998 999999999999999999999998874
No 2
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.2e-155 Score=1391.94 Aligned_cols=663 Identities=34% Similarity=0.594 Sum_probs=532.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 003002 132 GMGTAKYYMLKRRQIKIETEAW------------EQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQA 199 (858)
Q Consensus 132 ~~~~~~~~~l~eRQ~~lE~~~~------------~~a~~~~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~ 199 (858)
.+.....+.+.+.|+.+|..+. +..+..+|+.+ .++..+|...|..+|+++..
T Consensus 294 ~~~~~~L~~~~~~Ql~~E~~~~v~v~sve~~~~~t~~~~~~r~~l---------------~~~~~~w~~~l~~~~~~~~~ 358 (1134)
T 3spa_A 294 HLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTL---------------KTLRDQWEKALCRALRETKN 358 (1134)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCEEEEECCSCCCCCCTTHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCeeEEeecccCCCCCHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999997632 11223455544 66778999999999998776
Q ss_pred Hhhh--ccCccccccccccCCchhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhhccCCCCC
Q 003002 200 TAQD--KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNL 277 (858)
Q Consensus 200 ~~~~--~~~r~~y~p~L~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~ 277 (858)
.... ...+..++|||+.||.+.++.|.|.++..+ .. .|..++.++..||..|++++.+++-.....
T Consensus 359 ~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~l-~~--~g~~~~~~~~~lg~~~~~~~~~~~~~~~~~--------- 426 (1134)
T 3spa_A 359 RLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQAL-PA--QGESFTTLARELSARTFSRHVVQRQRVSGQ--------- 426 (1134)
T ss_dssp HHHHHHHTTCCCSTGGGGSSCHHHHHHHHHHHHHHC-CT--TCEEHHHHHHHHHHHHHHHHHHHHHHHHTH---------
T ss_pred HHHHhhccCCCccccceeeCCHHHHHHHHHHHHHHh-cc--cCccHHHHHHHHHHHHHHHHHHHHHHhhhH---------
Confidence 5433 456889999999999999999666665554 33 246778899999999999998864322110
Q ss_pred CCCCCCCCCChHHhHHHHHHHHHHHHH---HHHH--------HHHHHHHhhhhC-CCCCCCCCHHHHHHHHHHHHHHHHH
Q 003002 278 EGDSEPLTNDPEKLIKEQEKLKKRVTS---LIKK--------QKLQQVRGIVKG-HVDSKPWGQDALVKVGCRLIQLLME 345 (858)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~~~r~~~~~---~~~~--------~~~~~~~~~~~~-~~~~~~W~~~~~~kvG~~Li~~l~~ 345 (858)
.+.+.+.... +... .....|+.+... ...+.+|+..++++||++|+++|++
T Consensus 427 -----------------~~~~~~~y~~y~~~~~~~~~~~~~~~~r~~w~~l~~~~~~~~~~W~~~~~~kvG~~Ll~~L~~ 489 (1134)
T 3spa_A 427 -----------------VQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPWPLPVQMELGKLLAEMLVQ 489 (1134)
T ss_dssp -----------------HHHHHHHHHHHGGGTCSSCCCSSCCCHHHHHHHHHCCCCGGGCCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhCCcccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0000000000 0000 001122222222 2357899999999999999999999
Q ss_pred HccccCCCCCCCCCCCCccCceeEEeeecccccCCCeEEEEEEeCHHHHHHHHhcccc---ccCCCCCeeeCCcCcccCC
Q 003002 346 TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH---MIIPYMPMLVPPLNWRGYN 422 (858)
Q Consensus 346 ~~~i~~~~~~~~~~~~~~~paF~h~~~~~~~~~~~~k~~gvi~~~~~~~~~l~~~~~~---~~~~~lPMlvpP~pW~~~~ 422 (858)
+++|.+...+ +++....+|||+|.|++. +++++|+|++||.+.+.+++.... +.+.+|||||||+||++++
T Consensus 490 ~~~i~~~~~~-~~~~~~~~paf~h~y~~~-----~~~~~G~i~~hp~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~ 563 (1134)
T 3spa_A 490 ATQMPCSLDK-PHRSSRLVPVLYHVYSFR-----NVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPH 563 (1134)
T ss_dssp HCBCCC------------CBSEEEEEC---------CCCEEEEECHHHHHHHHHHTCSEEEEEGGGSCBSSCCEEEEETT
T ss_pred hccCCccccC-CCCCcccccceEEEEEEE-----cCcEEEEEEECHHHHHHHHhccccccccCcCCCCcccCCCCCCCCC
Confidence 9999875543 234467899999999753 478899999999999999875432 2345999999999999999
Q ss_pred CccccccCcceeecCchh-hHHHHHHcCCCCChhhHHHHHHhhcCcccEechHHHHHHHHHHhc-CCCCCCCCCCC-CCC
Q 003002 423 RGGHFFLPSYVMRTHGAR-QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS-GGCLAGLVDQE-DVP 499 (858)
Q Consensus 423 ~GGYl~~~~~~~R~~~~~-~q~~~l~~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~~-g~~i~~l~~~~-~~p 499 (858)
+||||+.++.+||+++.. ++..++++..+++|+.||++||+||+|||+||++||+|+.++|++ |+++.+||++. +.|
T Consensus 564 ~GGYl~~~t~~mR~~~~~~q~~~~l~~~~~~~l~~v~~aLN~Lg~t~W~IN~~VLdVv~~vw~~~G~~~~~iP~~~~~~p 643 (1134)
T 3spa_A 564 SGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAP 643 (1134)
T ss_dssp EEESSSSCCCSBCCCTTHHHHHHHHHSSCGGGGHHHHHHHHHHHTCEEEECHHHHHHHHHHHTTTCBGGGTBCCCC----
T ss_pred CceeEecCcceeecCCChHHHHHHHHhccccccHHHHHHHHHHhCCCcEecHHHHHHHHHHHHhcCCCcCCCCCCccccC
Confidence 999999999999996554 445556666778999999999999999999999999999999986 55678888753 345
Q ss_pred CCC---CCCCCCHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCCc
Q 003002 500 LPE---KPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576 (858)
Q Consensus 500 ~P~---~p~~~d~~~~~~wk~~~~~~~~~~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGs 576 (858)
.|+ .|.+.++++.++|++++++.++.++++||+||+++++|+||++|+|+ .||||||+|||||+||+||||||||+
T Consensus 644 ~~p~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~S~Rc~~~~kL~iA~~f~~~-~fYfPhnlDFRGR~Yp~~p~LnhqGs 722 (1134)
T 3spa_A 644 QPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDR-VFWLPHNMDFRGRTYPCPPHFNHLGS 722 (1134)
T ss_dssp ------------------------------CTHHHHHHHHHHHHHHHHHHTTS-CEECCEEECTTCCEEESCSSSCSCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-eeecccccCCCCcCcCCCCCcCcccc
Confidence 444 23455677888999999999999999999999999999999999996 89999999999999999999999999
Q ss_pred chhhhhhccccCccCccchhHHHHHHHHHhhcCCCCC-CCHHHHHHHHHhhHHHHHHhccCCcCcchhhhcCCchHHHHH
Q 003002 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK-LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655 (858)
Q Consensus 577 Dl~RsLL~FaegkpLG~~Gl~WLkIhlAN~~G~G~DK-~s~~eRi~wv~~n~~~I~~sA~~Pl~~~~wW~~Ad~P~QfLA 655 (858)
|+|||||+||+|+|||++|++|||||+||+| |+|| .||+||++||++|+++|++||+|||+|.+||++||+||||||
T Consensus 723 Dl~RsLL~FaegkpLG~~Gl~WLkIhlAN~~--G~dKk~s~~eRi~wv~~n~~~I~dsA~~Pl~g~~wW~~Ad~PwQfLA 800 (1134)
T 3spa_A 723 DVARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLA 800 (1134)
T ss_dssp HHHHHTEEESSCEECTTTHHHHHHHHHHHHH--SCCTTSCHHHHHHHHHHHHHHHHHHHHCTTTSCCGGGGSSSHHHHHH
T ss_pred hHHHHHHHhccCCcCCcchHHHHHHHHHHhc--CCCcCCCHHHHHHHHHHHHHHHHHHHhCcccchhHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999 8998 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCccccccccccCCCchhhHHHHhhCCcccccccccCCCCCCcchhHHHHHHHHHHHHhhhcCCCC
Q 003002 656 TCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPA 735 (858)
Q Consensus 656 ~C~El~~a~~s~~P~~y~S~lPVhqDGSCNGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~V~~~l~~da~~~~~ 735 (858)
+||||++|++++||++|+|||||||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|++++.
T Consensus 801 ~C~El~~a~~~~dp~~y~S~lPVhqDGSCNGLQHyAALgrD~~Ga~~VNL~psd~PqDvYs~Va~~V~~~~~~Da~~~~- 879 (1134)
T 3spa_A 801 CCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGM- 879 (1134)
T ss_dssp HHHHHHHHHTSSSGGGCEECCEEEECCSSHHHHHHHHHTTCHHHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhcCCCccccccCccccCCCCcHHHHHHHHccChhhHHHhCCCCCCCcccHHHHHHHHHHHHHHhhhhcCh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCcchHHHHHhhccCccccccceeeeeecccchhhHHHHHHHHHhhccCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003002 736 TYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARS 815 (858)
Q Consensus 736 ~~~~~~~a~~l~~~i~RKvVKqtVMT~vYGvT~~Ga~~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~ 815 (858)
.+|++|.+.|+||+|||||||+|||||++|+++||.++|++.+.++++ .++.+|+|+|++||+||+++|++|+.
T Consensus 880 -----~~a~~l~~~I~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~e~~~~~~~-~~~~~a~Yla~~i~~si~e~f~~a~~ 953 (1134)
T 3spa_A 880 -----RVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQE-FVWEASHYLVRQVFKSLQEMFSGTRA 953 (1134)
T ss_dssp -----HHHHHTTTCCCHHHHHHHHHHHHHCCSSSHHHHHHHHHHHTCTTSCTT-THHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred -----HHHHHhhCCCChhhcccceEEeeecceehhHHHHHHHHHHhcccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999997666554 67889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCeEeeeccCCCce
Q 003002 816 IMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRH 854 (858)
Q Consensus 816 im~WL~~~a~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~ 854 (858)
||+||++||++|++.+.||.||||+||||+|||++..+.
T Consensus 954 im~WL~~~A~~i~~~~~pV~WtTPlGlpVvQpY~k~~k~ 992 (1134)
T 3spa_A 954 IQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKV 992 (1134)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEECTTSCEEECCCBCC---
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCEEEEeccCCCce
Confidence 999999999999999999999999999999999996554
No 3
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=97.76 E-value=0.0001 Score=87.04 Aligned_cols=305 Identities=16% Similarity=0.164 Sum_probs=177.2
Q ss_pred hhHHHHHHhhcCcccEechHHHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhHhhhhh
Q 003002 455 EPVFQALDTLGSTKWRVNKRILGVIDRMWASG-GCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQR 533 (858)
Q Consensus 455 ~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~~g-~~i~~l~~~~~~p~P~~p~~~d~~~~~~wk~~~~~~~~~~~~~~s~R 533 (858)
+.+-.+|...|.+|++||..+..+...+=+.+ ..+.+. .++..| .-..+..+. +.-+| .+.+
T Consensus 338 ~lqakalkkaQ~q~hrvn~~m~~~~e~LgEDalltmlGa---~~l~~e----~ln~~~RkS-------lEGKN---~sV~ 400 (1118)
T 3q23_A 338 PEQKAALKAEQATEFYVHTPMVQFYETLGKDRILELMGA---GTLNKE----LLNDNHAKS-------LEGKN---RSVE 400 (1118)
T ss_dssp HHHHHHHHHHHHCCBEECHHHHHHHHHHHHHHHHHHHSC---CSCCTT----SSCHHHHHH-------HHHHH---HHHH
T ss_pred HHHHHHHHHhhccCceecccHHHHHHHhchhHHHHHhCc---cccccc----ccchhHHhh-------hhccc---HHHH
Confidence 44667889999999999999999987764433 122222 111111 111111111 11111 1222
Q ss_pred hhHH-------HHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCCcchhhhhhccccCc-cCc---cchhHHHHHH
Q 003002 534 CDIE-------LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH-PLG---KAGLHWLKIH 602 (858)
Q Consensus 534 ~~~~-------~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~Faegk-pLG---~~Gl~WLkIh 602 (858)
.++. ..-+++... +.-.+|||++|+-=||.=-. .-+|||.+=|-|-++.=.+.. .|+ ...++-|+.|
T Consensus 401 rdi~~~~d~iN~i~e~~~~~-~~vpIyf~y~mtrVGR~qm~-g~~NPQSsKLhRemv~pt~StV~L~~~N~~dm~~FqLg 478 (1118)
T 3q23_A 401 DSYNQLFSVIEQVRAQSEDI-STVPIHYAYNMTRVGRMQML-GKYNPQSAKLVREAILPTKATLDLSNQNNEDFSAFQLG 478 (1118)
T ss_dssp HHHHHHHHHHHHHHHHCSCG-GGCCEECCEEECTTSCEEES-SSSSTTTCHHHHTTEESCCEEECCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccc-ccCceeeeechhhhhhhhhc-CCCCchhHHHHHHHhcCCceEeecCCCCHHHHHHHHHH
Confidence 2211 111222211 11279999999655555433 668999999999998765532 355 3467888888
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHhhH-----------HHHHHhccCCcCcc---hhhhcCCchHHHHHHHHHHHHhhcCCC
Q 003002 603 LANLYAGGVDKLSYEGRVAFTENHL-----------DDIFDSADRPLEGR---RWWLGAEDPFQCLATCINLSEALRSPS 668 (858)
Q Consensus 603 lAN~~G~G~DK~s~~eRi~wv~~n~-----------~~I~~sA~~Pl~~~---~wW~~Ad~P~QfLA~C~El~~a~~s~~ 668 (858)
+|-.+|=.+||.+-++-++=+.+-+ .+|+....=|-.-. .=-+.+++||-.+-+-+|+++++...+
T Consensus 479 vaQslGiKVeK~~~e~~~~~~~~~l~t~lkpaVdmm~eiLt~G~~d~~~~dtl~~alg~~k~fvaamA~~e~Ary~la~G 558 (1118)
T 3q23_A 479 LAQALDIKVHTMTREVMSDELTKLLEGNLKPAIDMMVEFNTTGSLPENAVDVLNTALGDRKSFVALMALMEYSRYLVAED 558 (1118)
T ss_dssp HHHHTTCCGGGSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHSCCCTTHHHHHHHHHGGGCSHHHHHHHHHHHHHHHCSC
T ss_pred HHHHcCcchhcccHHHHHHHHHHHhcccccHHHHHHHHHhccCCCChhHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcC
Confidence 9988966668888766554444322 23333322220000 011678899654448999998876555
Q ss_pred CCCccccccccccCCCchhhHHHHh-hCCcc----------c-------ccccccCCC-CCCcchhHHHHHHHHHHHHhh
Q 003002 669 PESTISHIPVHMDGSCNGLQHYAAL-GRDKL----------G-------AAAVNLVGG-DKPADVYSGIAARVLEIMRAD 729 (858)
Q Consensus 669 P~~y~S~lPVhqDGSCNGLQHyAAL-~rD~~----------G-------a~~VNL~p~-d~P~DvYs~Va~~V~~~l~~d 729 (858)
-+.|.+.|-+-.||--||=-..=-+ |.-.. | |+.+|=.-+ ..--|.|..+++.+...+...
T Consensus 559 ~asF~T~L~~ElDGVTNGP~Namv~~G~g~~t~~~~~nl~KgG~F~G~~g~t~N~~~~~~~n~DLYE~ts~~l~~aLg~~ 638 (1118)
T 3q23_A 559 KSAFVTPLYVEADGVTNGPINAMMLMTGGLFTPDWIRNIAKGGLFIGSPNKTMNEHRSTADNNDLYQASTNALMESLGKL 638 (1118)
T ss_dssp GGGEEECCEEEEEETTHHHHHHHHHHCCSCCCHHHHHHHHTTTEEESCTTCCHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred CccceeeeEEEecCccccHHHHHHHhcCCcCCHHHHHHhhccceeecCCCchhhhhhcccCCchHHHHHHHHHHHHHHHh
Confidence 5689999999999999994332221 22111 1 133333222 133799999999999888755
Q ss_pred hcCCCCCCc----c--h-HHHHHh----------hccCccccccceeeeeecccchhhHHHHHHHH
Q 003002 730 ADKDPATYP----Y--A-SCARLL----------INQVDRKLVKQTVMTSVYGVTYIGARDQIKKR 778 (858)
Q Consensus 730 a~~~~~~~~----~--~-~~a~~l----------~~~i~RKvVKqtVMT~vYGvT~~Ga~~qI~~~ 778 (858)
..+=....| . . .++..+ .-.++|++.|.|+=..+||+...|+..-|.+.
T Consensus 639 ~~~~~~n~Pwq~q~~~l~sl~s~f~gd~~~~Eng~~~l~R~~aKnPlT~~~YGSg~rgia~gva~~ 704 (1118)
T 3q23_A 639 RSNYASNMPIQSQIDSLLSLMDLFLPDINLGENGALELKRGIAKNPLTITIYGSGARGIAGKLVSS 704 (1118)
T ss_dssp HHTTTTCHHHHHHHHHHHHHHHHHCTTEEECTTCCEEECTHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhhcccCCchHHHHHHHHHHHHHhhcccccCCCcchhhhhhhhhCCceeeeecCchHHHHHHHHHH
Confidence 322111111 0 0 122222 12689999999999999999988876655543
No 4
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=15.83 E-value=44 Score=38.68 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=86.9
Q ss_pred HHHHhhcCCCCCCccccccccccCCCchhhHHHHhhCCcccccccccCCCCCCcchhHHHHHHHHHHHHhhhcCCCCCCc
Q 003002 659 NLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYP 738 (858)
Q Consensus 659 El~~a~~s~~P~~y~S~lPVhqDGSCNGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~V~~~l~~da~~~~~~~~ 738 (858)
+++.++..+ .+ +.=|.-|-|-==|-.+|.|.+|...-.+.+ ...|||+..|..+-..- . +
T Consensus 301 ~iR~~f~a~--~G---~~lv~aDySqiElRvlAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~---~----~--- 360 (540)
T 4dfk_A 301 RIRRAFIAE--EG---WLLVALDYSQIELRVLAHLSGDENLIRVFQ-----EGRDIHTETASWMFGVP---R----E--- 360 (540)
T ss_dssp HHHTTEECC--TT---EEEEEEEETTHHHHHHHHHHCCHHHHHHHH-----TTCCHHHHHHHHHHTCC---G----G---
T ss_pred hhhheEeCC--CC---CEEEEecHHHHHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHcCCC---h----h---
Confidence 566666532 23 356888999999999999999997666654 35799999887663320 0 0
Q ss_pred chHHHHHhhccCccccccceeeeeecccchhhHHHHHHHHHhhccCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003002 739 YASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMS 818 (858)
Q Consensus 739 ~~~~a~~l~~~i~RKvVKqtVMT~vYGvT~~Ga~~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~ 818 (858)
. ...-.|+..|...--.+||.+.+|...++ |+ +.+ -|+.+.+..-+.||+. .+
T Consensus 361 --~-----v~~~~R~~aK~~~fg~~YG~~~~~La~~l-------gi-s~~---------eA~~~i~~~~~~~p~v---~~ 413 (540)
T 4dfk_A 361 --A-----VDPLMRRAAKTINFGVLYGMSAHRLSQEL-------AI-PYE---------EAQAFIERYFQSFPKV---RA 413 (540)
T ss_dssp --G-----CCHHHHHHHHHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHSTHH---HH
T ss_pred --h-----cCHHHHhHHHHHHHhhhhCCchhHHHHHc-------CC-CHH---------HHHHHHHHHHHhChhH---HH
Confidence 0 01236999999999999999999987765 32 211 1344555555666655 45
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCeE
Q 003002 819 WLGECAKVIASENQAVRWTTPLGLPV 844 (858)
Q Consensus 819 WL~~~a~~i~~~~~pV~WtTPlGlpV 844 (858)
|+.++.....+.| -| +|..|-..
T Consensus 414 ~~~~~~~~a~~~G-yv--~Tl~GRrr 436 (540)
T 4dfk_A 414 WIEKTLEEGRRRG-YV--ETLFGRRR 436 (540)
T ss_dssp HHHHHHHHHHHHS-EE--ECTTCCEE
T ss_pred HHHHHHHHHHhCC-cE--ECCCCCee
Confidence 5555554443333 22 57777543
No 5
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Probab=14.82 E-value=35 Score=30.86 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=9.7
Q ss_pred cccCCCchhhH
Q 003002 679 HMDGSCNGLQH 689 (858)
Q Consensus 679 hqDGSCNGLQH 689 (858)
..|||||-|+|
T Consensus 9 t~DG~cNNl~~ 19 (104)
T 1d2v_A 9 TITGMCNNRRS 19 (104)
T ss_dssp CSSCTTSSSSS
T ss_pred CCCCCccCCCC
Confidence 36999999998
No 6
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=14.32 E-value=38 Score=39.68 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=79.4
Q ss_pred ccccccCCCchhhHHHHhhCCcccccccccCCCCCCcchhHHHHHHHHHHHHhhhcCCCCCCcchHHHHHhhccCccccc
Q 003002 676 IPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLV 755 (858)
Q Consensus 676 lPVhqDGSCNGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~V~~~l~~da~~~~~~~~~~~~a~~l~~~i~RKvV 755 (858)
.=|.-|-|-==|-.+|.|.+|...-.+.+ ...|||+..|..+-.. .++.. ..-.|+..
T Consensus 364 ~lv~aDySqiElRilAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~-------~~~~v----------t~~~R~~a 421 (592)
T 3pv8_A 364 LIFAADYSQIELRVLAHIAEDDNLMEAFR-----RDLDIHTKTAMDIFQV-------SEDEV----------TPNMRRQA 421 (592)
T ss_dssp EEEEEEETTHHHHHHHHHHTCHHHHHHHH-----TTCCHHHHHHHHHHSC-------CTTTC----------CHHHHHHH
T ss_pred EEEEechhhHHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHhCC-------ChhhC----------CHHHHHHH
Confidence 56888999999999999999998766654 3579999988876321 01000 11248999
Q ss_pred cceeeeeecccchhhHHHHHHHHHhhccCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 003002 756 KQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVR 835 (858)
Q Consensus 756 KqtVMT~vYGvT~~Ga~~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~WL~~~a~~i~~~~~pV~ 835 (858)
|...--.+||.+.+|...++ |+ +.+ -|+.+.+..-+.||+. .+|+.++.....+.| -|
T Consensus 422 K~~~fg~~YG~~~~~La~~l-------~i-~~~---------eA~~~i~~~~~~~p~v---~~~~~~~~~~a~~~G-yv- 479 (592)
T 3pv8_A 422 KAVNYGIVYGISDYGLAQNL-------NI-SRK---------EAAEFIERYFESFPGV---KRYMENIVQEAKQKG-YV- 479 (592)
T ss_dssp HHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHS-EE-
T ss_pred HHHHHHHHhcCChHHHHHHc-------CC-CHH---------HHHHHHHHHHHHChhH---HHHHHHHHHHHHHcC-CE-
Confidence 99999999999999987765 32 211 1344555555666654 456555544433333 22
Q ss_pred EEcCCCCe
Q 003002 836 WTTPLGLP 843 (858)
Q Consensus 836 WtTPlGlp 843 (858)
+|..|-.
T Consensus 480 -~Tl~GRr 486 (592)
T 3pv8_A 480 -TTLLHRR 486 (592)
T ss_dssp -ECTTCCE
T ss_pred -ECCCCCe
Confidence 4666643
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=14.28 E-value=1.4e+02 Score=34.77 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=88.5
Q ss_pred HHHHhhcCCCCCCccccccccccCCCchhhHHHHhhCCcccccccccCCCCCCcchhHHHHHHHHHHHHhhhcCCCCCCc
Q 003002 659 NLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYP 738 (858)
Q Consensus 659 El~~a~~s~~P~~y~S~lPVhqDGSCNGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~V~~~l~~da~~~~~~~~ 738 (858)
++++++.. |.+ +.-|.-|-|-==|-.+|.|.+|.....+.+ ...|||+..|..+-..- ++
T Consensus 365 ~iR~~f~~--~~g---~~lv~aDysqiElRilA~ls~d~~l~~af~-----~g~Dih~~tA~~~f~~~-------~e--- 424 (605)
T 2kfn_A 365 RIRQAFIA--PED---YVIVSADYSQIELRIMAHLSRDKGLLTAFA-----EGKDIHRATAAEVFGLP-------LE--- 424 (605)
T ss_dssp HHHHTBBC--CTT---EEEEEEEETTHHHHHHHHHTTCHHHHHHHH-----TTCCHHHHHHHHHTTCC-------GG---
T ss_pred hHhheeeC--CCC---CEEEEechhhhHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHhCCC-------hh---
Confidence 56777754 233 457888999999999999999998776665 35799999887763210 00
Q ss_pred chHHHHHhhccCccccccceeeeeecccchhhHHHHHHHHHhhccCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003002 739 YASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMS 818 (858)
Q Consensus 739 ~~~~a~~l~~~i~RKvVKqtVMT~vYGvT~~Ga~~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~ 818 (858)
.. ..-.|+..|...--.+||.+.+|...++ |+-.++ |+.+.+..-+.||+ +.+
T Consensus 425 --~v-----t~~~R~~aK~~~fg~~YG~~~~~la~~l-------~i~~~e----------a~~~i~~~~~~~p~---v~~ 477 (605)
T 2kfn_A 425 --TV-----TSEQRRSAKAINFGLIYGMSAFGLARQL-------NIPRKE----------AQKYMDLYFERYPG---VLE 477 (605)
T ss_dssp --GC-----CHHHHHHHHHHHHHHHTTCCTTHHHHHH-------TCCTTT----------HHHHHHHHHHHCHH---HHH
T ss_pred --hc-----CHHHHhhhhhhhccccccCCHHHHHHHc-------CCCHHH----------HHHHHHHHHHHCcc---HHH
Confidence 00 1125899999999999999999988764 432222 24444555556665 456
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCeE
Q 003002 819 WLGECAKVIASENQAVRWTTPLGLPV 844 (858)
Q Consensus 819 WL~~~a~~i~~~~~pV~WtTPlGlpV 844 (858)
|+.++.....+.| -| +|.+|-..
T Consensus 478 ~~~~~~~~a~~~g-~v--~tl~GRrr 500 (605)
T 2kfn_A 478 YMERTRAQAKEQG-YV--ETLDGRRL 500 (605)
T ss_dssp HHHHHHHHHHHHS-EE--ECTTCCEE
T ss_pred HHHHHHHHHHHcC-cE--ECCCCCeE
Confidence 6666655444433 23 67777544
No 8
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=13.71 E-value=51 Score=29.46 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=24.1
Q ss_pred HHHhhcCCCCCCccccccccccCCCch----hhHHHHhh
Q 003002 660 LSEALRSPSPESTISHIPVHMDGSCNG----LQHYAALG 694 (858)
Q Consensus 660 l~~a~~s~~P~~y~S~lPVhqDGSCNG----LQHyAAL~ 694 (858)
+.+.++.-+|...+-.+|.++|||-+- .++|+..+
T Consensus 43 l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L 81 (98)
T 1iv0_A 43 LLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEAL 81 (98)
T ss_dssp HHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHH
Confidence 333333336789999999999999765 33666544
No 9
>3bhw_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.50A {Magnetospirillum magneticum}
Probab=12.69 E-value=1.3e+02 Score=30.39 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=23.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcccc
Q 003002 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQ 350 (858)
Q Consensus 322 ~~~~~W~~~~~~kvG~~Li~~l~~~~~i~ 350 (858)
.....|+..++-|+++.+..+|.|++.+.
T Consensus 137 ~~v~~wSdsT~kKl~q~~~~~L~eaGlL~ 165 (209)
T 3bhw_A 137 PLMPVWQDSTANKLADCVYRILVEVGYIT 165 (209)
T ss_dssp TTC----CHHHHHHHHHHHHHHHHHTCCC
T ss_pred CcccccCHHHHHHHHHHHHHHHHHcCCcC
Confidence 56779999999999999999999999885
No 10
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=9.64 E-value=68 Score=30.43 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=16.0
Q ss_pred CCCCccccccccccCCCc
Q 003002 668 SPESTISHIPVHMDGSCN 685 (858)
Q Consensus 668 ~P~~y~S~lPVhqDGSCN 685 (858)
+|+..+.++|.++|||-+
T Consensus 53 ~v~~iVvGlP~~mdGt~~ 70 (138)
T 1nu0_A 53 QPDEIIVGLPLNMDGTEQ 70 (138)
T ss_dssp CCSEEEEEEEECTTSCBC
T ss_pred CCCEEEEecccCCCcCcC
Confidence 678999999999999864
Done!