Query 003003
Match_columns 858
No_of_seqs 340 out of 1538
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 15:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09496 trkA potassium transp 100.0 1E-33 2.2E-38 327.0 40.9 425 296-852 2-439 (453)
2 PF06241 DUF1012: Protein of u 100.0 6.6E-35 1.4E-39 281.5 21.6 205 381-594 1-205 (206)
3 PRK10537 voltage-gated potassi 99.9 9.6E-26 2.1E-30 253.8 26.4 228 206-467 146-382 (393)
4 KOG1420 Ca2+-activated K+ chan 99.9 3.2E-25 7E-30 243.7 27.1 606 206-851 259-1066(1103)
5 KOG3193 K+ channel subunit [In 99.9 6.5E-22 1.4E-26 216.9 22.4 368 144-532 133-547 (1087)
6 COG0569 TrkA K+ transport syst 99.8 1.1E-19 2.4E-24 191.0 20.1 206 296-533 2-213 (225)
7 PRK09496 trkA potassium transp 99.8 1.4E-18 3E-23 201.0 24.6 210 292-532 229-439 (453)
8 PRK10669 putative cation:proto 99.6 3.8E-14 8.2E-19 168.5 23.1 139 294-462 417-555 (558)
9 PF06241 DUF1012: Protein of u 99.6 7.8E-14 1.7E-18 136.0 15.5 153 686-855 3-155 (206)
10 COG0569 TrkA K+ transport syst 99.5 4.7E-13 1E-17 140.9 17.6 209 598-852 2-212 (225)
11 PRK03659 glutathione-regulated 99.5 1.3E-12 2.8E-17 156.3 22.4 132 293-454 399-530 (601)
12 PF02254 TrkA_N: TrkA-N domain 99.4 8.4E-13 1.8E-17 124.0 12.9 116 297-442 1-116 (116)
13 PRK03562 glutathione-regulated 99.4 6.3E-12 1.4E-16 150.8 23.0 132 293-454 399-530 (621)
14 PRK10537 voltage-gated potassi 99.3 1E-11 2.2E-16 140.6 15.0 142 595-777 239-381 (393)
15 PF02254 TrkA_N: TrkA-N domain 99.2 1.6E-10 3.5E-15 108.5 10.2 111 599-747 1-111 (116)
16 PRK10669 putative cation:proto 99.0 1.4E-09 2.9E-14 129.7 12.4 139 595-772 416-554 (558)
17 PRK03659 glutathione-regulated 98.9 1.1E-08 2.5E-13 122.6 13.3 120 595-754 399-518 (601)
18 PRK03562 glutathione-regulated 98.8 2.2E-08 4.9E-13 120.4 13.1 115 595-747 399-513 (621)
19 COG0490 Putative regulatory, l 98.5 1.8E-07 4E-12 91.4 7.8 64 472-535 88-152 (162)
20 COG1226 Kch Kef-type K+ transp 98.5 1.4E-06 3.1E-11 88.3 14.6 142 291-462 18-160 (212)
21 PF07885 Ion_trans_2: Ion chan 98.3 1.3E-06 2.8E-11 76.7 7.2 69 207-277 6-78 (79)
22 KOG3713 Voltage-gated K+ chann 98.1 7E-06 1.5E-10 92.9 9.0 90 187-279 336-433 (477)
23 PF02080 TrkA_C: TrkA-C domain 97.9 8.7E-06 1.9E-10 69.6 4.1 60 473-533 3-63 (71)
24 KOG3193 K+ channel subunit [In 97.9 0.00023 5E-09 80.3 14.9 232 592-849 283-544 (1087)
25 PLN03192 Voltage-dependent pot 97.8 3.2E-05 6.9E-10 96.7 7.8 48 228-277 254-304 (823)
26 KOG1419 Voltage-gated K+ chann 97.7 7.8E-05 1.7E-09 84.8 7.2 60 222-283 267-329 (654)
27 KOG1420 Ca2+-activated K+ chan 97.6 7.5E-05 1.6E-09 84.6 6.5 230 594-852 355-620 (1103)
28 COG1226 Kch Kef-type K+ transp 97.6 0.00065 1.4E-08 68.7 12.6 137 594-769 19-156 (212)
29 KOG4404 Tandem pore domain K+ 97.5 0.00032 7E-09 75.5 8.8 77 196-276 160-247 (350)
30 PF03493 BK_channel_a: Calcium 97.5 0.00023 4.9E-09 65.7 6.7 71 433-503 7-101 (101)
31 KOG1545 Voltage-gated shaker-l 97.5 5E-05 1.1E-09 82.2 2.5 55 221-277 390-447 (507)
32 COG3273 Uncharacterized conser 97.3 0.00024 5.2E-09 70.8 4.9 61 473-533 122-183 (204)
33 COG3400 Uncharacterized protei 97.0 0.0099 2.2E-07 64.9 13.2 203 295-532 2-211 (471)
34 COG0490 Putative regulatory, l 96.7 0.0022 4.7E-08 63.3 5.3 63 784-854 89-151 (162)
35 KOG0498 K+-channel ERG and rel 96.5 0.012 2.5E-07 71.4 10.0 52 225-278 295-349 (727)
36 PF01007 IRK: Inward rectifier 96.3 0.0097 2.1E-07 66.5 7.5 73 223-302 83-160 (336)
37 KOG4390 Voltage-gated A-type K 95.7 0.0018 3.9E-08 70.9 -1.6 94 177-277 309-410 (632)
38 TIGR03802 Asp_Ala_antiprt aspa 95.6 0.017 3.7E-07 69.2 6.0 62 472-534 220-282 (562)
39 PRK05326 potassium/proton anti 95.3 0.025 5.5E-07 67.9 6.2 60 472-533 417-476 (562)
40 PRK03818 putative transporter; 95.1 0.025 5.4E-07 67.6 5.2 63 472-535 291-354 (552)
41 COG3400 Uncharacterized protei 94.6 0.52 1.1E-05 52.0 13.2 208 597-851 2-210 (471)
42 TIGR03802 Asp_Ala_antiprt aspa 94.6 0.043 9.2E-07 65.8 5.4 63 472-535 304-371 (562)
43 KOG1418 Tandem pore domain K+ 94.5 0.069 1.5E-06 60.9 6.8 63 221-283 112-175 (433)
44 PRK03818 putative transporter; 94.5 0.066 1.4E-06 64.0 6.8 60 472-533 207-267 (552)
45 PRK04972 putative transporter; 94.4 0.041 9E-07 65.9 4.9 63 472-535 304-366 (558)
46 KOG4404 Tandem pore domain K+ 93.7 0.11 2.3E-06 56.7 5.6 43 220-264 76-121 (350)
47 PF02080 TrkA_C: TrkA-C domain 93.6 0.09 1.9E-06 44.6 4.1 59 784-851 3-61 (71)
48 PRK04972 putative transporter; 93.0 0.19 4.2E-06 60.2 7.0 50 483-533 229-279 (558)
49 KOG0499 Cyclic nucleotide-gate 93.0 0.22 4.7E-06 58.0 7.0 60 219-278 398-457 (815)
50 PRK06719 precorrin-2 dehydroge 92.7 0.36 7.9E-06 48.2 7.5 69 293-391 12-80 (157)
51 KOG0501 K+-channel KCNQ [Inorg 92.6 0.54 1.2E-05 54.7 9.4 51 225-277 424-477 (971)
52 PRK06719 precorrin-2 dehydroge 91.4 0.6 1.3E-05 46.6 7.3 34 595-631 12-45 (157)
53 KOG3684 Ca2+-activated K+ chan 90.7 0.42 9.1E-06 54.4 6.0 77 199-277 256-341 (489)
54 KOG0500 Cyclic nucleotide-gate 89.6 1 2.2E-05 51.8 7.9 51 226-278 185-237 (536)
55 COG3263 NhaP-type Na+/H+ and K 89.5 0.48 1E-05 53.8 5.1 53 479-533 422-474 (574)
56 COG1748 LYS9 Saccharopine dehy 89.4 9.2 0.0002 43.8 15.3 179 295-516 2-198 (389)
57 PRK06718 precorrin-2 dehydroge 88.8 1.1 2.3E-05 46.8 6.9 72 293-391 9-80 (202)
58 COG3273 Uncharacterized conser 88.7 0.81 1.8E-05 46.3 5.6 50 799-852 133-182 (204)
59 PF00520 Ion_trans: Ion transp 87.8 2.4 5.2E-05 42.3 8.6 48 223-272 144-200 (200)
60 TIGR01470 cysG_Nterm siroheme 86.9 3.4 7.3E-05 43.2 9.2 70 293-389 8-77 (205)
61 KOG3827 Inward rectifier K+ ch 86.4 3.9 8.5E-05 45.9 9.7 75 223-302 111-188 (400)
62 TIGR01470 cysG_Nterm siroheme 83.9 5.1 0.00011 41.8 8.9 56 596-662 9-64 (205)
63 cd05211 NAD_bind_Glu_Leu_Phe_V 83.8 7.5 0.00016 41.0 10.1 36 293-341 22-57 (217)
64 PF03435 Saccharop_dh: Sacchar 83.6 5 0.00011 45.8 9.5 76 297-389 1-76 (386)
65 COG0300 DltE Short-chain dehyd 82.0 5.7 0.00012 43.1 8.5 71 293-378 5-76 (265)
66 KOG1418 Tandem pore domain K+ 81.5 0.29 6.3E-06 55.7 -1.7 61 205-269 225-296 (433)
67 PF13460 NAD_binding_10: NADH( 81.4 8.7 0.00019 38.3 9.3 69 297-390 1-70 (183)
68 KOG1053 Glutamate-gated NMDA-t 80.6 5.5 0.00012 49.0 8.3 58 220-277 605-663 (1258)
69 PF00106 adh_short: short chai 80.5 6.9 0.00015 38.3 8.0 68 295-377 1-71 (167)
70 PF00670 AdoHcyase_NAD: S-aden 80.5 5.9 0.00013 39.8 7.4 26 293-318 22-47 (162)
71 PF05368 NmrA: NmrA-like famil 79.3 11 0.00023 39.5 9.5 71 297-389 1-73 (233)
72 PRK06194 hypothetical protein; 77.0 11 0.00025 40.5 9.1 67 294-376 6-73 (287)
73 cd01075 NAD_bind_Leu_Phe_Val_D 76.8 49 0.0011 34.3 13.3 44 293-350 27-70 (200)
74 cd05213 NAD_bind_Glutamyl_tRNA 76.7 30 0.00066 38.4 12.5 119 293-445 177-296 (311)
75 PF08659 KR: KR domain; Inter 75.4 10 0.00022 38.5 7.6 68 295-376 1-71 (181)
76 PF03807 F420_oxidored: NADP o 75.3 12 0.00026 33.4 7.3 45 297-351 2-46 (96)
77 PRK08265 short chain dehydroge 75.2 14 0.0003 39.4 9.0 64 294-376 6-70 (261)
78 COG2985 Predicted permease [Ge 75.0 2.7 5.8E-05 48.7 3.5 57 478-535 210-267 (544)
79 PF00060 Lig_chan: Ligand-gate 74.6 7.8 0.00017 37.3 6.4 55 224-278 44-98 (148)
80 PRK09186 flagellin modificatio 73.8 14 0.0003 38.9 8.6 69 294-376 4-73 (256)
81 PRK12935 acetoacetyl-CoA reduc 73.5 18 0.00039 37.9 9.3 69 293-376 5-74 (247)
82 PF01408 GFO_IDH_MocA: Oxidore 73.5 60 0.0013 29.9 11.9 71 296-390 2-72 (120)
83 PRK06718 precorrin-2 dehydroge 73.2 8 0.00017 40.2 6.4 34 596-632 10-43 (202)
84 PRK06914 short chain dehydroge 73.0 18 0.00038 38.8 9.3 68 294-375 3-71 (280)
85 PRK07097 gluconate 5-dehydroge 72.7 15 0.00034 39.0 8.7 68 294-377 10-78 (265)
86 PRK08251 short chain dehydroge 72.6 18 0.00038 38.0 9.0 68 295-376 3-71 (248)
87 PRK07666 fabG 3-ketoacyl-(acyl 72.4 19 0.00042 37.5 9.2 68 293-376 6-74 (239)
88 cd01078 NAD_bind_H4MPT_DH NADP 72.2 58 0.0013 33.2 12.5 79 293-390 27-106 (194)
89 PLN02780 ketoreductase/ oxidor 71.9 41 0.00088 37.4 12.1 61 294-368 53-114 (320)
90 PRK06949 short chain dehydroge 71.8 18 0.00038 38.2 8.8 69 292-376 7-76 (258)
91 PRK07024 short chain dehydroge 71.5 17 0.00037 38.5 8.6 66 294-376 2-68 (257)
92 PRK07454 short chain dehydroge 71.3 20 0.00042 37.5 9.0 66 295-376 7-73 (241)
93 PRK07063 short chain dehydroge 71.2 19 0.00041 38.1 8.9 69 294-376 7-76 (260)
94 PRK06924 short chain dehydroge 70.8 15 0.00033 38.6 8.0 64 295-376 2-66 (251)
95 PRK07523 gluconate 5-dehydroge 70.7 20 0.00043 37.9 8.9 68 293-376 9-77 (255)
96 PRK08416 7-alpha-hydroxysteroi 70.5 19 0.00042 38.2 8.8 69 294-376 8-77 (260)
97 PRK07109 short chain dehydroge 70.3 19 0.0004 40.3 9.0 68 293-376 7-75 (334)
98 PRK12746 short chain dehydroge 70.0 23 0.00051 37.2 9.3 68 294-376 6-74 (254)
99 PLN02819 lysine-ketoglutarate 69.6 28 0.00061 45.0 11.1 88 294-390 569-658 (1042)
100 PRK09291 short chain dehydroge 69.6 26 0.00056 36.9 9.5 78 295-388 3-81 (257)
101 PRK05854 short chain dehydroge 69.3 21 0.00045 39.5 9.0 70 293-376 13-83 (313)
102 PRK05565 fabG 3-ketoacyl-(acyl 69.1 23 0.0005 36.8 8.9 68 294-376 5-73 (247)
103 PRK06172 short chain dehydroge 69.0 21 0.00047 37.5 8.7 67 294-376 7-74 (253)
104 PRK12939 short chain dehydroge 69.0 24 0.00052 36.8 9.0 80 293-388 6-92 (250)
105 PRK06940 short chain dehydroge 68.9 18 0.0004 39.0 8.3 66 294-376 2-67 (275)
106 PRK08063 enoyl-(acyl carrier p 68.8 25 0.00055 36.7 9.2 79 295-388 5-90 (250)
107 PRK12429 3-hydroxybutyrate deh 68.5 22 0.00048 37.2 8.7 67 294-376 4-71 (258)
108 PRK06124 gluconate 5-dehydroge 68.4 22 0.00049 37.4 8.7 68 293-376 10-78 (256)
109 PRK07062 short chain dehydroge 68.4 22 0.00048 37.7 8.8 69 294-376 8-77 (265)
110 PRK12475 thiamine/molybdopteri 68.3 26 0.00056 39.5 9.5 27 292-318 22-48 (338)
111 PRK08643 acetoin reductase; Va 68.2 23 0.00051 37.3 8.8 66 295-376 3-69 (256)
112 PRK05876 short chain dehydroge 67.8 26 0.00057 37.8 9.2 67 294-376 6-73 (275)
113 PRK05866 short chain dehydroge 67.5 22 0.00047 38.9 8.6 67 294-376 40-107 (293)
114 PRK05562 precorrin-2 dehydroge 67.4 30 0.00065 36.7 9.1 70 294-390 25-94 (223)
115 PRK06200 2,3-dihydroxy-2,3-dih 67.1 23 0.00049 37.6 8.5 64 294-376 6-70 (263)
116 PRK06500 short chain dehydroge 66.7 26 0.00057 36.5 8.8 63 294-375 6-69 (249)
117 PRK07326 short chain dehydroge 66.7 25 0.00055 36.4 8.6 78 294-388 6-90 (237)
118 PRK12826 3-ketoacyl-(acyl-carr 66.5 29 0.00062 36.2 9.0 79 294-388 6-91 (251)
119 PRK06139 short chain dehydroge 66.5 22 0.00048 39.8 8.5 68 293-376 6-74 (330)
120 PRK08213 gluconate 5-dehydroge 66.1 28 0.0006 36.8 8.9 67 294-376 12-79 (259)
121 PRK07067 sorbitol dehydrogenas 66.0 27 0.00059 36.9 8.8 64 294-376 6-70 (257)
122 CHL00194 ycf39 Ycf39; Provisio 66.0 21 0.00046 39.3 8.2 71 296-389 2-73 (317)
123 PRK07231 fabG 3-ketoacyl-(acyl 65.9 29 0.00062 36.2 8.9 78 294-388 5-89 (251)
124 PRK06138 short chain dehydroge 65.8 29 0.00064 36.2 9.0 78 294-388 5-89 (252)
125 PRK07576 short chain dehydroge 65.7 27 0.00058 37.3 8.8 68 293-376 8-76 (264)
126 PRK07831 short chain dehydroge 65.5 30 0.00064 36.7 9.0 70 293-376 16-87 (262)
127 PRK06947 glucose-1-dehydrogena 65.5 28 0.00062 36.4 8.8 67 295-376 3-70 (248)
128 PF03493 BK_channel_a: Calcium 65.3 38 0.00082 31.2 8.4 71 747-820 10-101 (101)
129 PRK08267 short chain dehydroge 65.2 23 0.0005 37.5 8.1 64 295-376 2-66 (260)
130 PRK12829 short chain dehydroge 65.0 27 0.00059 36.8 8.6 79 293-389 10-95 (264)
131 PRK07890 short chain dehydroge 64.9 29 0.00062 36.5 8.7 67 294-376 5-72 (258)
132 PRK05867 short chain dehydroge 64.8 31 0.00068 36.3 8.9 67 294-376 9-76 (253)
133 PRK12937 short chain dehydroge 64.7 32 0.00068 35.8 8.9 80 294-388 5-91 (245)
134 PRK05557 fabG 3-ketoacyl-(acyl 64.6 32 0.00069 35.6 8.9 80 294-388 5-91 (248)
135 PF13460 NAD_binding_10: NADH( 64.5 12 0.00026 37.3 5.4 56 599-669 1-57 (183)
136 PRK10538 malonic semialdehyde 64.5 25 0.00055 37.0 8.2 74 296-388 2-82 (248)
137 PRK09242 tropinone reductase; 64.4 33 0.00071 36.2 9.0 69 294-376 9-78 (257)
138 PRK08339 short chain dehydroge 64.4 28 0.00061 37.2 8.6 68 294-376 8-76 (263)
139 PRK07774 short chain dehydroge 64.3 32 0.0007 36.0 8.9 68 293-376 5-73 (250)
140 PRK05650 short chain dehydroge 64.1 27 0.00058 37.3 8.3 65 296-376 2-67 (270)
141 CHL00194 ycf39 Ycf39; Provisio 63.9 40 0.00086 37.2 9.9 59 598-669 2-61 (317)
142 PRK06197 short chain dehydroge 63.9 30 0.00065 37.8 8.9 70 293-376 15-85 (306)
143 PRK13394 3-hydroxybutyrate deh 63.7 31 0.00067 36.3 8.7 67 294-376 7-74 (262)
144 PRK06101 short chain dehydroge 63.4 22 0.00048 37.3 7.4 61 296-376 3-64 (240)
145 PRK07806 short chain dehydroge 63.1 38 0.00083 35.4 9.2 68 294-376 6-74 (248)
146 PRK08642 fabG 3-ketoacyl-(acyl 62.6 36 0.00078 35.6 8.9 65 294-376 5-70 (253)
147 PRK12938 acetyacetyl-CoA reduc 62.5 38 0.00083 35.3 9.0 67 295-376 4-71 (246)
148 PRK07478 short chain dehydroge 62.4 34 0.00073 36.1 8.7 67 294-376 6-73 (254)
149 PRK05653 fabG 3-ketoacyl-(acyl 62.0 34 0.00075 35.3 8.5 79 294-388 5-90 (246)
150 PRK09135 pteridine reductase; 61.6 43 0.00094 34.8 9.2 70 294-377 6-76 (249)
151 PRK06482 short chain dehydroge 61.2 33 0.00072 36.7 8.5 76 295-389 3-85 (276)
152 PLN03209 translocon at the inn 61.2 37 0.0008 41.0 9.4 82 293-389 79-168 (576)
153 TIGR02415 23BDH acetoin reduct 61.1 36 0.00077 35.7 8.5 65 296-376 2-67 (254)
154 PRK06181 short chain dehydroge 60.7 35 0.00076 36.1 8.5 66 295-376 2-68 (263)
155 KOG1370 S-adenosylhomocysteine 60.7 21 0.00045 39.3 6.4 63 294-389 214-277 (434)
156 KOG4440 NMDA selective glutama 59.8 16 0.00036 43.3 5.8 56 221-276 610-666 (993)
157 PRK09730 putative NAD(P)-bindi 59.7 39 0.00083 35.2 8.5 66 296-376 3-69 (247)
158 COG1748 LYS9 Saccharopine dehy 59.7 49 0.0011 38.0 9.7 65 597-670 2-66 (389)
159 PF02719 Polysacc_synt_2: Poly 59.7 19 0.00042 39.7 6.2 76 297-385 1-82 (293)
160 PF07991 IlvN: Acetohydroxy ac 59.6 16 0.00035 36.8 5.1 67 293-389 3-69 (165)
161 TIGR03206 benzo_BadH 2-hydroxy 59.3 45 0.00098 34.7 9.0 67 294-376 3-70 (250)
162 TIGR03466 HpnA hopanoid-associ 59.1 69 0.0015 34.9 10.7 59 598-669 2-61 (328)
163 TIGR01832 kduD 2-deoxy-D-gluco 58.6 44 0.00095 34.9 8.7 64 294-376 5-70 (248)
164 PRK12743 oxidoreductase; Provi 58.6 47 0.001 35.1 9.0 78 296-388 4-88 (256)
165 TIGR01500 sepiapter_red sepiap 58.5 37 0.00079 36.0 8.1 71 296-376 2-73 (256)
166 PRK08085 gluconate 5-dehydroge 58.3 48 0.001 34.9 9.0 67 294-376 9-76 (254)
167 PRK08340 glucose-1-dehydrogena 58.1 38 0.00082 35.9 8.1 64 296-376 2-66 (259)
168 TIGR03325 BphB_TodD cis-2,3-di 58.0 40 0.00087 35.7 8.4 64 294-376 5-69 (262)
169 PRK08936 glucose-1-dehydrogena 57.8 49 0.0011 35.0 9.0 68 294-376 7-75 (261)
170 PRK07102 short chain dehydroge 57.7 41 0.0009 35.1 8.3 66 296-376 3-69 (243)
171 PRK05717 oxidoreductase; Valid 57.6 49 0.0011 34.9 8.9 65 293-376 9-74 (255)
172 PRK08277 D-mannonate oxidoredu 57.5 46 0.00099 35.6 8.8 67 294-376 10-77 (278)
173 PRK08589 short chain dehydroge 57.5 41 0.0009 36.0 8.4 66 294-376 6-72 (272)
174 PRK06114 short chain dehydroge 57.2 48 0.001 35.0 8.8 68 294-376 8-76 (254)
175 PRK07775 short chain dehydroge 57.0 49 0.0011 35.5 8.9 68 293-376 9-77 (274)
176 cd01065 NAD_bind_Shikimate_DH 56.9 47 0.001 32.2 8.0 46 293-351 18-63 (155)
177 PRK07814 short chain dehydroge 56.6 50 0.0011 35.1 8.8 67 294-376 10-77 (263)
178 cd01076 NAD_bind_1_Glu_DH NAD( 56.5 42 0.0009 35.7 8.0 26 293-318 30-55 (227)
179 PRK07035 short chain dehydroge 56.5 52 0.0011 34.5 8.8 67 294-376 8-75 (252)
180 PRK09134 short chain dehydroge 56.5 52 0.0011 34.8 8.9 68 294-376 9-77 (258)
181 COG1648 CysG Siroheme synthase 56.4 50 0.0011 34.7 8.4 43 294-349 12-54 (210)
182 PRK05326 potassium/proton anti 56.0 14 0.00031 44.5 4.9 47 799-852 429-475 (562)
183 PRK08219 short chain dehydroge 55.9 53 0.0011 33.6 8.6 74 295-389 4-80 (227)
184 PRK07825 short chain dehydroge 55.7 46 0.001 35.5 8.4 63 294-376 5-68 (273)
185 PRK12745 3-ketoacyl-(acyl-carr 55.6 52 0.0011 34.5 8.7 67 295-376 3-70 (256)
186 PRK12481 2-deoxy-D-gluconate 3 55.4 49 0.0011 35.0 8.5 64 294-376 8-73 (251)
187 PRK06437 hypothetical protein; 55.4 28 0.0006 29.6 5.2 44 483-529 19-63 (67)
188 PRK06180 short chain dehydroge 55.3 45 0.00098 35.8 8.3 63 295-376 5-68 (277)
189 PRK08217 fabG 3-ketoacyl-(acyl 55.2 52 0.0011 34.3 8.5 66 294-375 5-71 (253)
190 PLN02896 cinnamyl-alcohol dehy 55.1 69 0.0015 35.8 10.0 79 293-389 9-88 (353)
191 PLN02214 cinnamoyl-CoA reducta 55.0 68 0.0015 35.9 9.9 80 294-390 10-91 (342)
192 PLN02650 dihydroflavonol-4-red 54.8 45 0.00098 37.2 8.4 81 294-389 5-86 (351)
193 PRK05562 precorrin-2 dehydroge 54.6 71 0.0015 33.9 9.2 56 595-661 24-79 (223)
194 PRK12548 shikimate 5-dehydroge 54.6 54 0.0012 36.0 8.8 80 293-389 125-207 (289)
195 PLN00141 Tic62-NAD(P)-related 54.5 41 0.00088 35.6 7.7 75 294-388 17-93 (251)
196 TIGR01831 fabG_rel 3-oxoacyl-( 54.4 46 0.001 34.5 8.0 65 297-376 1-66 (239)
197 PRK12825 fabG 3-ketoacyl-(acyl 54.4 67 0.0015 33.1 9.2 80 295-389 7-93 (249)
198 PRK07792 fabG 3-ketoacyl-(acyl 54.2 58 0.0013 35.8 9.0 68 293-376 11-80 (306)
199 PRK12827 short chain dehydroge 54.2 54 0.0012 34.1 8.4 80 294-388 6-95 (249)
200 PRK05875 short chain dehydroge 54.0 57 0.0012 34.8 8.8 81 294-388 7-94 (276)
201 PRK08862 short chain dehydroge 53.9 56 0.0012 34.2 8.5 42 294-349 5-47 (227)
202 PF13241 NAD_binding_7: Putati 53.8 17 0.00037 33.3 4.0 35 293-340 6-40 (103)
203 PRK12936 3-ketoacyl-(acyl-carr 53.6 63 0.0014 33.5 8.9 65 293-376 5-70 (245)
204 TIGR03023 WcaJ_sugtrans Undeca 53.4 1.6E+02 0.0034 34.4 12.9 24 294-317 128-151 (451)
205 PRK06198 short chain dehydroge 53.0 69 0.0015 33.7 9.1 69 293-376 5-74 (260)
206 TIGR01963 PHB_DH 3-hydroxybuty 52.9 56 0.0012 34.1 8.4 64 296-375 3-67 (255)
207 PRK07904 short chain dehydroge 52.6 50 0.0011 35.1 8.0 68 294-375 8-77 (253)
208 PRK05993 short chain dehydroge 52.6 48 0.001 35.6 7.9 61 294-376 4-65 (277)
209 PF05368 NmrA: NmrA-like famil 52.5 25 0.00054 36.8 5.5 60 599-669 1-61 (233)
210 PRK08267 short chain dehydroge 52.5 28 0.00061 36.8 6.1 64 597-669 2-66 (260)
211 PF01488 Shikimate_DH: Shikima 52.4 38 0.00082 32.7 6.3 122 292-445 10-132 (135)
212 PRK12384 sorbitol-6-phosphate 52.4 64 0.0014 34.0 8.7 67 296-376 4-71 (259)
213 PRK08226 short chain dehydroge 52.1 68 0.0015 33.9 8.9 67 293-376 5-72 (263)
214 PRK05884 short chain dehydroge 52.1 44 0.00096 34.8 7.3 60 296-376 2-62 (223)
215 TIGR01289 LPOR light-dependent 52.0 63 0.0014 35.6 8.9 67 294-376 3-71 (314)
216 COG0373 HemA Glutamyl-tRNA red 52.0 82 0.0018 36.6 9.8 72 293-391 177-248 (414)
217 PRK07677 short chain dehydroge 51.7 56 0.0012 34.4 8.1 65 296-376 3-68 (252)
218 PRK07453 protochlorophyllide o 51.7 68 0.0015 35.3 9.1 67 294-376 6-73 (322)
219 PRK08594 enoyl-(acyl carrier p 51.6 63 0.0014 34.4 8.6 66 294-376 7-77 (257)
220 PRK05872 short chain dehydroge 51.3 65 0.0014 35.1 8.8 67 293-376 8-75 (296)
221 TIGR01181 dTDP_gluc_dehyt dTDP 51.1 41 0.0009 36.3 7.2 74 296-389 1-82 (317)
222 PRK08017 oxidoreductase; Provi 50.8 48 0.001 34.8 7.4 59 295-375 3-62 (256)
223 KOG1014 17 beta-hydroxysteroid 50.6 1.6E+02 0.0036 32.7 11.4 44 294-351 49-93 (312)
224 PRK00045 hemA glutamyl-tRNA re 50.5 1.7E+02 0.0036 34.1 12.4 106 293-429 181-286 (423)
225 TIGR03025 EPS_sugtrans exopoly 50.4 2E+02 0.0042 33.6 13.0 24 294-317 125-148 (445)
226 KOG1210 Predicted 3-ketosphing 50.3 1.2E+02 0.0027 33.7 10.4 65 294-372 33-98 (331)
227 PRK06182 short chain dehydroge 50.3 50 0.0011 35.2 7.6 73 294-388 3-82 (273)
228 PRK09072 short chain dehydroge 50.3 71 0.0015 33.8 8.7 78 294-388 5-88 (263)
229 TIGR02685 pter_reduc_Leis pter 50.2 56 0.0012 34.8 7.9 64 296-373 3-67 (267)
230 PRK12859 3-ketoacyl-(acyl-carr 50.1 82 0.0018 33.3 9.2 26 293-318 5-33 (256)
231 PRK07424 bifunctional sterol d 49.9 1.4E+02 0.003 34.7 11.4 75 294-388 178-253 (406)
232 COG1086 Predicted nucleoside-d 49.9 59 0.0013 38.9 8.4 70 294-376 250-320 (588)
233 PRK06484 short chain dehydroge 49.8 55 0.0012 38.7 8.5 64 294-376 269-333 (520)
234 PRK06123 short chain dehydroge 49.8 71 0.0015 33.3 8.5 67 295-376 3-70 (248)
235 PRK08309 short chain dehydroge 49.7 77 0.0017 32.2 8.4 64 296-376 2-65 (177)
236 PRK12824 acetoacetyl-CoA reduc 49.4 86 0.0019 32.4 9.1 66 295-376 3-70 (245)
237 PRK08628 short chain dehydroge 49.3 69 0.0015 33.7 8.4 66 294-376 7-73 (258)
238 PRK07985 oxidoreductase; Provi 49.2 71 0.0015 34.8 8.7 67 294-376 49-118 (294)
239 PRK12744 short chain dehydroge 49.2 74 0.0016 33.5 8.6 68 294-376 8-79 (257)
240 PLN02214 cinnamoyl-CoA reducta 49.2 1.8E+02 0.0039 32.5 12.1 68 596-669 10-78 (342)
241 PLN02662 cinnamyl-alcohol dehy 49.0 51 0.0011 36.0 7.6 78 295-389 5-85 (322)
242 PLN02989 cinnamyl-alcohol dehy 48.9 68 0.0015 35.2 8.6 81 294-389 5-86 (325)
243 PRK01581 speE spermidine synth 48.9 1.1E+02 0.0024 35.0 10.1 67 595-668 150-222 (374)
244 PRK06701 short chain dehydroge 48.8 78 0.0017 34.4 8.9 68 294-376 46-114 (290)
245 PRK06125 short chain dehydroge 48.5 77 0.0017 33.5 8.6 68 294-376 7-75 (259)
246 PRK06179 short chain dehydroge 48.4 38 0.00083 36.0 6.3 59 294-376 4-63 (270)
247 PRK12742 oxidoreductase; Provi 48.3 73 0.0016 32.9 8.3 63 294-376 6-69 (237)
248 KOG1201 Hydroxysteroid 17-beta 48.2 1.5E+02 0.0033 32.8 10.6 69 292-377 36-105 (300)
249 PRK06522 2-dehydropantoate 2-r 48.1 2E+02 0.0043 31.2 12.0 40 296-349 2-41 (304)
250 PRK08364 sulfur carrier protei 48.0 38 0.00082 28.9 4.9 43 483-528 22-65 (70)
251 PRK07791 short chain dehydroge 47.9 82 0.0018 34.1 8.9 66 294-375 6-81 (286)
252 PRK06113 7-alpha-hydroxysteroi 47.7 83 0.0018 33.1 8.7 67 294-376 11-78 (255)
253 PRK05599 hypothetical protein; 47.6 67 0.0015 33.9 7.9 65 296-376 2-67 (246)
254 TIGR03589 PseB UDP-N-acetylglu 47.2 86 0.0019 34.7 9.1 78 295-389 5-83 (324)
255 PLN02253 xanthoxin dehydrogena 47.0 82 0.0018 33.7 8.6 66 294-376 18-84 (280)
256 cd01483 E1_enzyme_family Super 46.6 1E+02 0.0022 29.7 8.4 23 296-318 1-23 (143)
257 PF01210 NAD_Gly3P_dh_N: NAD-d 46.3 34 0.00073 33.9 5.1 40 297-350 2-41 (157)
258 PLN02986 cinnamyl-alcohol dehy 46.2 80 0.0017 34.6 8.6 79 294-389 5-86 (322)
259 TIGR01830 3oxo_ACP_reduc 3-oxo 46.2 71 0.0015 32.9 7.8 65 297-376 1-66 (239)
260 TIGR01829 AcAcCoA_reduct aceto 46.1 84 0.0018 32.5 8.3 65 297-376 3-68 (242)
261 PRK07201 short chain dehydroge 45.9 65 0.0014 39.3 8.5 67 294-376 371-438 (657)
262 PRK08303 short chain dehydroge 45.6 75 0.0016 35.0 8.2 67 294-376 8-85 (305)
263 PRK08263 short chain dehydroge 45.6 87 0.0019 33.5 8.6 62 296-376 5-67 (275)
264 TIGR00518 alaDH alanine dehydr 45.6 79 0.0017 36.1 8.5 70 294-386 167-236 (370)
265 PRK06057 short chain dehydroge 45.5 57 0.0012 34.4 7.0 63 294-377 7-70 (255)
266 PLN00141 Tic62-NAD(P)-related 45.3 1.6E+02 0.0034 31.1 10.4 64 595-669 16-81 (251)
267 PRK07069 short chain dehydroge 45.3 86 0.0019 32.6 8.3 66 297-376 2-69 (251)
268 PRK07060 short chain dehydroge 45.2 66 0.0014 33.4 7.4 74 294-388 9-85 (245)
269 PRK13302 putative L-aspartate 45.0 2.6E+02 0.0057 30.4 12.2 70 295-389 7-76 (271)
270 PF10727 Rossmann-like: Rossma 44.8 39 0.00083 32.6 5.0 108 294-436 10-120 (127)
271 PLN02583 cinnamoyl-CoA reducta 44.6 93 0.002 33.9 8.7 77 294-386 6-84 (297)
272 PRK06196 oxidoreductase; Provi 43.9 73 0.0016 35.0 7.8 64 294-377 26-90 (315)
273 PRK06079 enoyl-(acyl carrier p 43.7 97 0.0021 32.7 8.5 64 294-376 7-73 (252)
274 PF03435 Saccharop_dh: Sacchar 43.7 45 0.00098 38.0 6.3 64 599-669 1-64 (386)
275 PRK06077 fabG 3-ketoacyl-(acyl 43.5 1.1E+02 0.0024 31.9 8.8 80 294-388 6-92 (252)
276 cd01485 E1-1_like Ubiquitin ac 43.5 54 0.0012 33.9 6.2 26 293-318 18-43 (198)
277 COG1648 CysG Siroheme synthase 43.4 74 0.0016 33.4 7.2 62 595-668 11-72 (210)
278 TIGR02356 adenyl_thiF thiazole 43.4 1.4E+02 0.003 31.0 9.3 26 293-318 20-45 (202)
279 PRK07832 short chain dehydroge 43.2 86 0.0019 33.4 8.1 66 296-376 2-68 (272)
280 PRK07074 short chain dehydroge 43.1 82 0.0018 33.1 7.8 76 296-389 4-86 (257)
281 PF00070 Pyr_redox: Pyridine n 43.1 32 0.00069 29.7 3.8 31 598-631 1-31 (80)
282 PF13241 NAD_binding_7: Putati 42.8 37 0.0008 31.1 4.4 34 595-631 6-39 (103)
283 PLN00203 glutamyl-tRNA reducta 42.8 2.5E+02 0.0054 33.7 12.4 125 293-443 265-390 (519)
284 KOG1208 Dehydrogenases with di 42.6 1E+02 0.0023 34.4 8.7 71 293-377 33-105 (314)
285 PRK06935 2-deoxy-D-gluconate 3 42.3 1E+02 0.0022 32.5 8.4 66 294-376 15-81 (258)
286 COG1087 GalE UDP-glucose 4-epi 41.8 1.3E+02 0.0027 33.6 8.8 106 598-724 2-111 (329)
287 PRK07806 short chain dehydroge 41.8 59 0.0013 34.0 6.4 67 596-669 6-74 (248)
288 PRK05855 short chain dehydroge 41.8 91 0.002 37.0 8.7 69 293-377 314-383 (582)
289 PRK08993 2-deoxy-D-gluconate 3 41.7 1.3E+02 0.0028 31.7 9.0 63 294-376 10-75 (253)
290 PRK08264 short chain dehydroge 41.7 73 0.0016 33.0 7.1 73 294-388 6-81 (238)
291 PRK06463 fabG 3-ketoacyl-(acyl 41.3 1E+02 0.0022 32.4 8.2 62 294-376 7-69 (255)
292 PRK04017 hypothetical protein; 41.1 1.9E+02 0.0042 28.1 9.1 68 305-391 8-75 (132)
293 PRK07688 thiamine/molybdopteri 41.0 1.4E+02 0.003 33.8 9.4 27 292-318 22-48 (339)
294 PF01370 Epimerase: NAD depend 40.7 1.2E+02 0.0027 31.0 8.5 73 297-390 1-75 (236)
295 PRK04148 hypothetical protein; 40.7 70 0.0015 31.2 6.1 54 294-370 17-70 (134)
296 PRK12829 short chain dehydroge 40.6 57 0.0012 34.3 6.1 65 596-669 11-76 (264)
297 PRK10637 cysG siroheme synthas 40.5 1.1E+02 0.0023 36.1 8.8 71 293-390 11-81 (457)
298 PRK05786 fabG 3-ketoacyl-(acyl 40.4 1.3E+02 0.0028 31.1 8.7 66 294-376 5-71 (238)
299 PRK08278 short chain dehydroge 40.0 1.1E+02 0.0025 32.7 8.4 67 294-376 6-80 (273)
300 TIGR01035 hemA glutamyl-tRNA r 39.9 3.2E+02 0.0068 31.8 12.5 119 293-444 179-299 (417)
301 PRK07889 enoyl-(acyl carrier p 39.8 1E+02 0.0022 32.8 7.8 64 294-376 7-75 (256)
302 PRK10637 cysG siroheme synthas 39.8 1.2E+02 0.0026 35.6 9.1 57 595-662 11-67 (457)
303 PLN02819 lysine-ketoglutarate 39.8 1.6E+02 0.0034 38.4 10.6 66 594-669 567-645 (1042)
304 PF01113 DapB_N: Dihydrodipico 39.8 53 0.0012 31.2 5.1 22 296-317 2-24 (124)
305 PRK11908 NAD-dependent epimera 39.7 98 0.0021 34.4 8.1 71 296-387 3-75 (347)
306 PRK12823 benD 1,6-dihydroxycyc 39.7 1.2E+02 0.0025 32.0 8.3 66 294-376 8-74 (260)
307 PRK09414 glutamate dehydrogena 39.7 1.2E+02 0.0025 35.8 8.7 44 292-348 230-283 (445)
308 PRK06720 hypothetical protein; 39.6 1.5E+02 0.0033 29.7 8.7 66 294-375 16-82 (169)
309 PRK13940 glutamyl-tRNA reducta 39.6 1.1E+02 0.0024 35.5 8.6 72 294-391 181-252 (414)
310 PRK06924 short chain dehydroge 39.2 68 0.0015 33.5 6.4 64 597-669 2-66 (251)
311 cd01491 Ube1_repeat1 Ubiquitin 39.1 2.8E+02 0.0061 30.6 11.2 36 595-632 18-53 (286)
312 PRK08177 short chain dehydroge 39.0 82 0.0018 32.5 6.9 61 295-376 2-63 (225)
313 PRK07024 short chain dehydroge 39.0 80 0.0017 33.3 6.9 65 597-669 3-68 (257)
314 PRK07023 short chain dehydroge 38.8 89 0.0019 32.6 7.2 60 296-376 3-63 (243)
315 PF01073 3Beta_HSD: 3-beta hyd 38.8 55 0.0012 35.8 5.7 69 301-389 5-75 (280)
316 PRK15181 Vi polysaccharide bio 38.5 2E+02 0.0044 32.0 10.4 114 596-724 15-134 (348)
317 PRK06483 dihydromonapterin red 38.4 1.2E+02 0.0026 31.4 8.0 61 294-376 2-64 (236)
318 PRK05693 short chain dehydroge 38.0 99 0.0021 33.0 7.5 60 295-376 2-62 (274)
319 PRK12748 3-ketoacyl-(acyl-carr 38.0 1.3E+02 0.0029 31.5 8.5 24 295-318 6-32 (256)
320 PRK12921 2-dehydropantoate 2-r 37.8 2.7E+02 0.0058 30.3 11.0 38 296-348 2-39 (305)
321 PLN02427 UDP-apiose/xylose syn 37.8 1.2E+02 0.0025 34.5 8.4 81 293-389 13-95 (386)
322 TIGR00262 trpA tryptophan synt 37.8 2.2E+02 0.0048 30.8 10.1 131 297-446 90-231 (256)
323 PRK07326 short chain dehydroge 37.7 68 0.0015 33.2 6.0 65 596-669 6-72 (237)
324 PRK06484 short chain dehydroge 37.5 1.1E+02 0.0023 36.2 8.4 65 595-669 268-333 (520)
325 CHL00200 trpA tryptophan synth 37.5 5.7E+02 0.012 27.8 16.2 130 296-445 93-234 (263)
326 TIGR03649 ergot_EASG ergot alk 37.4 66 0.0014 34.6 6.1 68 297-389 2-76 (285)
327 KOG1205 Predicted dehydrogenas 37.3 92 0.002 34.3 7.0 72 294-382 12-93 (282)
328 PRK12475 thiamine/molybdopteri 37.2 3.2E+02 0.007 30.8 11.6 33 595-630 23-56 (338)
329 PRK07074 short chain dehydroge 37.2 73 0.0016 33.5 6.3 64 597-669 3-67 (257)
330 PRK12747 short chain dehydroge 37.1 1.5E+02 0.0034 30.9 8.7 65 294-373 4-69 (252)
331 COG0686 Ald Alanine dehydrogen 36.8 1.1E+02 0.0025 34.1 7.5 70 292-384 166-235 (371)
332 PLN03223 Polycystin cation cha 36.8 96 0.0021 40.8 7.8 58 221-279 1358-1425(1634)
333 PRK07454 short chain dehydroge 36.7 67 0.0015 33.4 5.8 67 596-669 6-73 (241)
334 COG1377 FlhB Flagellar biosynt 36.7 5.7E+02 0.012 29.2 13.2 46 405-453 299-347 (363)
335 KOG1430 C-3 sterol dehydrogena 36.5 1.9E+02 0.0042 33.0 9.6 113 595-724 3-119 (361)
336 COG0169 AroE Shikimate 5-dehyd 36.4 1E+02 0.0023 33.9 7.3 46 293-351 125-170 (283)
337 cd00565 ThiS ThiaminS ubiquiti 36.1 64 0.0014 26.9 4.5 44 484-529 14-61 (65)
338 PF01073 3Beta_HSD: 3-beta hyd 36.0 1.6E+02 0.0035 32.1 8.8 59 602-669 4-63 (280)
339 PRK07041 short chain dehydroge 36.0 1.2E+02 0.0025 31.2 7.5 62 298-376 1-63 (230)
340 COG4292 Predicted membrane pro 35.8 31 0.00066 38.8 3.0 41 225-265 57-97 (387)
341 PRK08690 enoyl-(acyl carrier p 35.8 1.2E+02 0.0026 32.3 7.7 25 294-318 6-33 (261)
342 PRK07417 arogenate dehydrogena 35.8 83 0.0018 34.2 6.5 40 296-349 2-41 (279)
343 PRK06194 hypothetical protein; 35.6 85 0.0018 33.7 6.6 67 596-669 6-73 (287)
344 COG2104 ThiS Sulfur transfer p 34.9 81 0.0018 27.1 4.9 43 484-528 17-63 (68)
345 PRK06841 short chain dehydroge 34.8 1.6E+02 0.0035 30.7 8.5 64 294-376 15-79 (255)
346 PRK08945 putative oxoacyl-(acy 34.7 1.5E+02 0.0033 30.8 8.2 43 293-349 11-54 (247)
347 TIGR03466 HpnA hopanoid-associ 34.7 73 0.0016 34.7 5.9 71 296-389 2-73 (328)
348 PLN02695 GDP-D-mannose-3',5'-e 34.5 4.4E+02 0.0096 29.8 12.4 62 595-669 20-82 (370)
349 TIGR01181 dTDP_gluc_dehyt dTDP 34.2 94 0.002 33.5 6.7 67 598-669 1-68 (317)
350 PRK10675 UDP-galactose-4-epime 34.2 1.5E+02 0.0034 32.5 8.5 76 296-389 2-82 (338)
351 cd05015 SIS_PGI_1 Phosphogluco 34.0 4.7E+02 0.01 25.8 11.6 60 275-348 6-67 (158)
352 PF03721 UDPG_MGDP_dh_N: UDP-g 33.9 1E+02 0.0022 31.6 6.4 40 296-349 2-41 (185)
353 TIGR03589 PseB UDP-N-acetylglu 33.6 3.6E+02 0.0077 29.8 11.3 66 597-669 5-71 (324)
354 PRK12828 short chain dehydroge 33.5 1.3E+02 0.0028 30.8 7.3 65 294-376 7-72 (239)
355 cd01485 E1-1_like Ubiquitin ac 33.5 2.7E+02 0.0059 28.7 9.6 33 596-630 19-51 (198)
356 TIGR01683 thiS thiamine biosyn 33.3 1.1E+02 0.0023 25.5 5.3 44 484-529 13-60 (64)
357 PRK07904 short chain dehydroge 33.0 1E+02 0.0022 32.7 6.6 71 595-669 7-78 (253)
358 cd00757 ThiF_MoeB_HesA_family 32.7 2.1E+02 0.0047 30.1 8.9 26 293-318 20-45 (228)
359 TIGR03438 probable methyltrans 32.7 3.5E+02 0.0076 29.8 10.9 113 300-431 72-186 (301)
360 PRK06997 enoyl-(acyl carrier p 32.4 1.5E+02 0.0031 31.7 7.7 64 294-376 6-74 (260)
361 PF03446 NAD_binding_2: NAD bi 32.4 3E+02 0.0065 27.2 9.4 41 295-349 2-42 (163)
362 PRK13243 glyoxylate reductase; 32.3 6.9E+02 0.015 28.0 13.3 26 293-318 149-174 (333)
363 PRK12745 3-ketoacyl-(acyl-carr 32.2 1E+02 0.0022 32.3 6.3 67 597-669 3-70 (256)
364 PRK07533 enoyl-(acyl carrier p 32.2 1.8E+02 0.0038 30.9 8.2 63 294-376 10-78 (258)
365 cd01080 NAD_bind_m-THF_DH_Cycl 32.2 1.5E+02 0.0033 29.9 7.3 26 292-317 42-68 (168)
366 PLN03209 translocon at the inn 31.9 3.6E+02 0.0079 32.8 11.4 70 595-669 79-156 (576)
367 PLN02427 UDP-apiose/xylose syn 31.8 1.3E+02 0.0029 34.0 7.6 70 595-669 13-83 (386)
368 PRK08324 short chain dehydroge 31.7 1.4E+02 0.0031 36.9 8.3 67 293-376 421-488 (681)
369 KOG0024 Sorbitol dehydrogenase 31.6 1.8E+02 0.0039 32.7 8.0 73 280-374 159-231 (354)
370 COG2185 Sbm Methylmalonyl-CoA 31.4 5.3E+02 0.011 25.6 10.8 104 330-443 12-123 (143)
371 PRK07984 enoyl-(acyl carrier p 31.2 1.9E+02 0.0042 30.9 8.4 25 294-318 6-33 (262)
372 PLN02583 cinnamoyl-CoA reducta 31.1 99 0.0022 33.7 6.2 70 596-671 6-77 (297)
373 TIGR03022 WbaP_sugtrans Undeca 31.0 3.8E+02 0.0082 31.3 11.4 24 294-317 125-148 (456)
374 PRK10124 putative UDP-glucose 30.8 6.6E+02 0.014 29.6 13.3 24 294-317 143-166 (463)
375 PRK05557 fabG 3-ketoacyl-(acyl 30.8 1.2E+02 0.0025 31.3 6.5 68 596-669 5-73 (248)
376 PF02826 2-Hacid_dh_C: D-isome 30.7 3.9E+02 0.0084 26.9 10.0 26 293-318 35-60 (178)
377 COG1086 Predicted nucleoside-d 30.7 5.8E+02 0.013 31.0 12.4 75 291-390 113-187 (588)
378 PRK08251 short chain dehydroge 30.6 1.1E+02 0.0024 31.8 6.4 67 597-669 3-71 (248)
379 PF08659 KR: KR domain; Inter 30.6 95 0.0021 31.3 5.6 70 598-672 2-74 (181)
380 PRK09186 flagellin modificatio 30.5 1E+02 0.0023 32.1 6.1 69 596-669 4-73 (256)
381 TIGR02632 RhaD_aldol-ADH rhamn 30.5 2.5E+02 0.0055 34.8 10.2 69 294-376 414-483 (676)
382 TIGR01832 kduD 2-deoxy-D-gluco 30.4 1.3E+02 0.0027 31.4 6.7 65 596-669 5-70 (248)
383 cd01484 E1-2_like Ubiquitin ac 30.3 1E+02 0.0022 33.0 5.8 40 296-348 1-40 (234)
384 PF00670 AdoHcyase_NAD: S-aden 30.2 49 0.0011 33.4 3.2 35 595-632 22-56 (162)
385 PLN02591 tryptophan synthase 30.1 7.3E+02 0.016 26.8 16.1 133 296-446 80-222 (250)
386 PRK06953 short chain dehydroge 30.0 1.6E+02 0.0035 30.2 7.3 59 296-376 3-62 (222)
387 PRK15181 Vi polysaccharide bio 30.0 1.9E+02 0.0041 32.3 8.3 81 294-389 15-99 (348)
388 TIGR02964 xanthine_xdhC xanthi 30.0 2.7E+02 0.0058 30.0 9.1 85 293-405 99-183 (246)
389 TIGR03649 ergot_EASG ergot alk 29.7 74 0.0016 34.2 4.9 56 598-669 1-57 (285)
390 PLN02686 cinnamoyl-CoA reducta 29.7 2E+02 0.0043 32.6 8.5 80 293-387 52-135 (367)
391 PRK05482 potassium-transportin 29.0 1.7E+02 0.0038 35.2 7.9 42 222-263 449-493 (559)
392 PRK13304 L-aspartate dehydroge 28.9 7.6E+02 0.017 26.6 13.5 68 296-389 3-70 (265)
393 PRK06488 sulfur carrier protei 28.9 1.4E+02 0.003 24.9 5.3 44 484-529 14-61 (65)
394 PF00106 adh_short: short chai 28.9 90 0.002 30.2 4.9 68 597-669 1-70 (167)
395 PRK05993 short chain dehydroge 28.6 78 0.0017 34.0 4.8 61 596-669 4-65 (277)
396 PRK12935 acetoacetyl-CoA reduc 28.5 1.4E+02 0.003 31.1 6.6 68 596-669 6-74 (247)
397 PRK07231 fabG 3-ketoacyl-(acyl 28.5 1.4E+02 0.0031 30.9 6.7 66 596-669 5-71 (251)
398 PF00070 Pyr_redox: Pyridine n 28.5 1E+02 0.0022 26.5 4.7 23 296-318 1-23 (80)
399 TIGR00872 gnd_rel 6-phosphoglu 28.4 4.8E+02 0.01 28.6 11.0 67 296-389 2-68 (298)
400 COG4262 Predicted spermidine s 28.4 97 0.0021 35.2 5.3 69 594-669 288-362 (508)
401 PRK08063 enoyl-(acyl carrier p 28.4 1.3E+02 0.0028 31.3 6.3 67 597-669 5-72 (250)
402 KOG3599 Ca2+-modulated nonsele 28.3 2.5E+02 0.0054 35.5 9.5 99 185-285 581-688 (798)
403 PLN02657 3,8-divinyl protochlo 28.3 1.1E+02 0.0025 34.9 6.3 76 296-387 62-143 (390)
404 PRK08265 short chain dehydroge 28.2 1.3E+02 0.0029 31.8 6.5 64 596-669 6-70 (261)
405 PRK07523 gluconate 5-dehydroge 28.2 1.3E+02 0.0027 31.7 6.2 67 596-669 10-77 (255)
406 COG1893 ApbA Ketopantoate redu 28.2 3.5E+02 0.0075 30.1 9.8 71 296-387 2-74 (307)
407 PF01488 Shikimate_DH: Shikima 28.1 1.1E+02 0.0023 29.6 5.1 44 595-642 11-54 (135)
408 PRK14106 murD UDP-N-acetylmura 28.1 2E+02 0.0043 33.4 8.4 71 294-388 5-76 (450)
409 PRK08159 enoyl-(acyl carrier p 28.0 1.9E+02 0.0042 31.0 7.8 62 295-376 11-78 (272)
410 PRK08017 oxidoreductase; Provi 27.8 77 0.0017 33.2 4.5 60 597-669 3-63 (256)
411 COG0279 GmhA Phosphoheptose is 27.7 6.7E+02 0.015 25.6 11.0 23 294-316 41-66 (176)
412 PRK12481 2-deoxy-D-gluconate 3 27.7 1.4E+02 0.0031 31.4 6.6 65 596-669 8-73 (251)
413 PRK07856 short chain dehydroge 27.5 1.9E+02 0.0041 30.3 7.5 59 294-376 6-65 (252)
414 PF00899 ThiF: ThiF family; I 27.3 84 0.0018 30.0 4.3 25 294-318 2-26 (135)
415 PRK08703 short chain dehydroge 27.3 2.2E+02 0.0047 29.5 7.8 42 294-349 6-48 (239)
416 PRK11880 pyrroline-5-carboxyla 27.3 1.6E+02 0.0035 31.5 6.9 43 296-349 4-46 (267)
417 PRK06079 enoyl-(acyl carrier p 27.1 1.6E+02 0.0034 31.1 6.8 64 596-669 7-73 (252)
418 PRK06914 short chain dehydroge 27.1 1.4E+02 0.003 31.8 6.4 67 597-668 4-71 (280)
419 PRK08762 molybdopterin biosynt 27.1 2.8E+02 0.0062 31.6 9.2 25 294-318 135-159 (376)
420 cd05291 HicDH_like L-2-hydroxy 27.0 63 0.0014 35.7 3.8 39 296-346 2-40 (306)
421 cd01483 E1_enzyme_family Super 27.0 4.7E+02 0.01 25.0 9.6 32 598-631 1-32 (143)
422 PRK06128 oxidoreductase; Provi 26.8 2.6E+02 0.0056 30.4 8.6 68 294-376 55-124 (300)
423 PLN00015 protochlorophyllide r 26.7 1.9E+02 0.0041 31.7 7.5 63 298-376 1-65 (308)
424 PLN02650 dihydroflavonol-4-red 26.7 5.1E+02 0.011 28.7 11.1 69 596-669 5-74 (351)
425 PRK12938 acetyacetyl-CoA reduc 26.5 1.5E+02 0.0032 30.8 6.4 67 597-669 4-71 (246)
426 PRK06603 enoyl-(acyl carrier p 26.5 2.6E+02 0.0055 29.7 8.3 25 294-318 8-35 (260)
427 PLN00198 anthocyanidin reducta 26.5 2.8E+02 0.0062 30.5 9.0 78 294-389 9-89 (338)
428 PF08016 PKD_channel: Polycyst 26.5 2.9E+02 0.0063 32.0 9.3 91 185-276 324-422 (425)
429 PRK09135 pteridine reductase; 26.3 1.4E+02 0.0031 30.8 6.2 68 596-669 6-75 (249)
430 PRK12824 acetoacetyl-CoA reduc 26.3 1.8E+02 0.004 30.0 7.0 67 597-669 3-70 (245)
431 PRK06505 enoyl-(acyl carrier p 26.3 2.7E+02 0.0059 29.8 8.5 25 294-318 7-34 (271)
432 smart00822 PKS_KR This enzymat 26.2 1.8E+02 0.0038 27.8 6.4 67 296-376 2-71 (180)
433 PRK07370 enoyl-(acyl carrier p 26.1 2.2E+02 0.0048 30.1 7.7 24 295-318 7-33 (258)
434 PRK08415 enoyl-(acyl carrier p 26.0 2.5E+02 0.0055 30.2 8.2 63 294-376 5-73 (274)
435 PRK12429 3-hydroxybutyrate deh 25.9 1.4E+02 0.003 31.1 6.1 66 597-669 5-71 (258)
436 PRK06138 short chain dehydroge 25.9 1.6E+02 0.0036 30.5 6.6 66 596-669 5-71 (252)
437 PF02386 TrkH: Cation transpor 25.9 42 0.00091 37.9 2.2 66 201-267 272-345 (354)
438 PRK08125 bifunctional UDP-gluc 25.8 1.6E+02 0.0035 36.3 7.4 75 293-388 314-390 (660)
439 PRK06179 short chain dehydroge 25.8 1.1E+02 0.0025 32.3 5.4 58 597-669 5-63 (270)
440 PRK08594 enoyl-(acyl carrier p 25.6 1.7E+02 0.0037 31.0 6.7 67 596-669 7-77 (257)
441 PRK08416 7-alpha-hydroxysteroi 25.6 1.4E+02 0.003 31.6 6.0 68 596-669 8-77 (260)
442 PF00899 ThiF: ThiF family; I 25.5 4.3E+02 0.0093 25.1 8.9 34 596-631 2-35 (135)
443 COG0499 SAM1 S-adenosylhomocys 25.5 1.1E+02 0.0025 34.6 5.3 63 294-389 209-272 (420)
444 PRK12828 short chain dehydroge 25.4 1.2E+02 0.0027 31.0 5.5 65 596-669 7-72 (239)
445 PRK08993 2-deoxy-D-gluconate 3 25.2 2.3E+02 0.005 29.8 7.6 65 596-669 10-75 (253)
446 PRK06182 short chain dehydroge 25.2 93 0.002 33.2 4.6 61 596-669 3-64 (273)
447 PRK05659 sulfur carrier protei 25.2 1.6E+02 0.0034 24.5 5.1 46 483-529 14-62 (66)
448 PLN02240 UDP-glucose 4-epimera 25.0 3.3E+02 0.0071 30.1 9.1 81 294-389 5-90 (352)
449 PLN02572 UDP-sulfoquinovose sy 25.0 1.9E+02 0.004 33.9 7.3 71 594-669 45-131 (442)
450 PRK15116 sulfur acceptor prote 25.0 4.2E+02 0.0091 29.0 9.5 27 292-318 28-54 (268)
451 PRK12825 fabG 3-ketoacyl-(acyl 24.9 1.6E+02 0.0035 30.2 6.3 67 597-669 7-74 (249)
452 TIGR03325 BphB_TodD cis-2,3-di 24.8 1.8E+02 0.0038 30.8 6.7 64 596-669 5-69 (262)
453 PRK12937 short chain dehydroge 24.8 1.9E+02 0.0041 29.9 6.8 67 596-669 5-73 (245)
454 PRK01438 murD UDP-N-acetylmura 24.8 2.9E+02 0.0063 32.4 9.0 26 293-318 15-40 (480)
455 TIGR01472 gmd GDP-mannose 4,6- 24.8 2.7E+02 0.0058 30.8 8.4 80 296-389 2-87 (343)
456 PRK05884 short chain dehydroge 24.7 1.3E+02 0.0029 31.1 5.6 60 598-669 2-62 (223)
457 PRK07831 short chain dehydroge 24.7 1.5E+02 0.0033 31.2 6.1 69 596-669 17-87 (262)
458 PRK14618 NAD(P)H-dependent gly 24.6 1.6E+02 0.0035 32.7 6.5 40 296-349 6-45 (328)
459 TIGR00640 acid_CoA_mut_C methy 24.5 4.4E+02 0.0096 25.4 8.7 83 356-442 29-112 (132)
460 PRK00048 dihydrodipicolinate r 24.4 2.6E+02 0.0055 30.2 7.8 21 296-316 3-24 (257)
461 COG4221 Short-chain alcohol de 24.4 2.8E+02 0.0061 29.9 7.8 60 295-372 7-67 (246)
462 PRK06947 glucose-1-dehydrogena 24.3 1.7E+02 0.0037 30.4 6.4 67 597-669 3-70 (248)
463 PRK06988 putative formyltransf 24.2 3E+02 0.0065 30.7 8.5 23 296-318 4-26 (312)
464 PRK03612 spermidine synthase; 24.2 4.7E+02 0.01 31.4 10.7 67 595-668 297-369 (521)
465 PRK05866 short chain dehydroge 24.1 1.9E+02 0.004 31.6 6.8 66 596-669 40-107 (293)
466 PRK00536 speE spermidine synth 24.1 83 0.0018 34.2 3.9 31 595-630 72-102 (262)
467 PF03793 PASTA: PASTA domain; 24.1 1.4E+02 0.0031 24.3 4.5 49 479-527 3-60 (63)
468 PRK08226 short chain dehydroge 24.1 1.6E+02 0.0036 30.9 6.2 66 596-669 6-72 (263)
469 PLN02366 spermidine synthase 24.0 1.5E+02 0.0033 33.0 6.0 65 595-663 91-157 (308)
470 PRK12746 short chain dehydroge 23.9 1.9E+02 0.0041 30.2 6.6 68 596-669 6-74 (254)
471 PRK07890 short chain dehydroge 23.9 1.5E+02 0.0032 31.1 5.8 67 596-669 5-72 (258)
472 PLN02477 glutamate dehydrogena 23.9 2.6E+02 0.0057 32.5 8.1 26 293-318 205-230 (410)
473 TIGR01472 gmd GDP-mannose 4,6- 23.9 1.7E+02 0.0036 32.5 6.5 69 597-669 1-73 (343)
474 PRK11064 wecC UDP-N-acetyl-D-m 23.9 3.8E+02 0.0083 31.0 9.6 40 295-348 4-43 (415)
475 PRK09242 tropinone reductase; 23.8 1.5E+02 0.0033 31.1 5.9 69 596-669 9-78 (257)
476 PRK06101 short chain dehydroge 23.7 1.8E+02 0.0039 30.3 6.3 62 597-669 2-64 (240)
477 PRK12939 short chain dehydroge 23.6 1.7E+02 0.0038 30.2 6.2 67 596-669 7-74 (250)
478 PRK06841 short chain dehydroge 23.6 1.8E+02 0.0038 30.4 6.3 64 596-669 15-79 (255)
479 PRK08053 sulfur carrier protei 23.5 1.7E+02 0.0037 24.5 4.9 45 483-529 14-62 (66)
480 KOG4169 15-hydroxyprostaglandi 23.5 2E+02 0.0044 30.8 6.3 66 294-376 6-73 (261)
481 TIGR02853 spore_dpaA dipicolin 23.5 2.5E+02 0.0054 30.9 7.6 39 294-346 151-189 (287)
482 PRK12490 6-phosphogluconate de 23.4 8.4E+02 0.018 26.7 11.8 39 296-348 2-40 (299)
483 PRK13394 3-hydroxybutyrate deh 23.4 2E+02 0.0043 30.1 6.7 67 596-669 7-74 (262)
484 PRK06940 short chain dehydroge 23.4 1.6E+02 0.0035 31.6 6.0 66 596-669 2-67 (275)
485 PTZ00075 Adenosylhomocysteinas 23.3 5.6E+02 0.012 30.4 10.7 27 292-318 252-278 (476)
486 PRK06483 dihydromonapterin red 23.3 1.3E+02 0.0028 31.2 5.2 62 596-669 2-64 (236)
487 PRK09730 putative NAD(P)-bindi 23.3 1.8E+02 0.0038 30.1 6.2 67 597-669 2-69 (247)
488 COG3967 DltE Short-chain dehyd 23.3 2.7E+02 0.0058 29.5 7.1 41 295-349 6-47 (245)
489 PF01564 Spermine_synth: Sperm 23.2 1.2E+02 0.0025 32.6 4.8 68 595-669 76-146 (246)
490 PRK07792 fabG 3-ketoacyl-(acyl 23.2 2.3E+02 0.0051 30.9 7.4 68 596-669 12-80 (306)
491 PRK07023 short chain dehydroge 23.1 2.1E+02 0.0045 29.7 6.7 60 598-669 3-63 (243)
492 PRK09134 short chain dehydroge 23.0 2.2E+02 0.0047 30.0 6.9 68 596-669 9-77 (258)
493 KOG1298 Squalene monooxygenase 22.9 1.6E+02 0.0035 33.9 5.8 42 294-349 45-86 (509)
494 TIGR01505 tartro_sem_red 2-hyd 22.9 2E+02 0.0043 31.3 6.7 39 297-349 2-40 (291)
495 TIGR01546 GAPDH-II_archae glyc 22.7 3.8E+02 0.0083 30.2 8.9 43 297-351 1-43 (333)
496 PRK06181 short chain dehydroge 22.6 1.8E+02 0.0038 30.7 6.1 66 597-669 2-68 (263)
497 PF02737 3HCDH_N: 3-hydroxyacy 22.5 1.8E+02 0.0039 29.5 5.9 40 296-349 1-40 (180)
498 PLN02260 probable rhamnose bio 22.5 6.1E+02 0.013 31.2 11.5 69 596-669 6-75 (668)
499 PRK08264 short chain dehydroge 22.5 1.8E+02 0.0039 30.0 6.0 60 596-669 6-67 (238)
500 PRK07062 short chain dehydroge 22.3 1.8E+02 0.0038 30.8 6.0 69 596-669 8-77 (265)
No 1
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=100.00 E-value=1e-33 Score=327.01 Aligned_cols=425 Identities=15% Similarity=0.208 Sum_probs=315.3
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
||+|||+|..|..++++|...+. .++++ +.+++..+.+.+.. +.+ ++.||+++.++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-------------~v~vi-d~~~~~~~~~~~~~-----~~~--~~~gd~~~~~~l~~ 60 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-------------DVTVI-DTDEERLRRLQDRL-----DVR--TVVGNGSSPDVLRE 60 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-------------cEEEE-ECCHHHHHHHHhhc-----CEE--EEEeCCCCHHHHHH
Confidence 89999999999999999987654 56665 77777777654311 334 44799999999999
Q ss_pred cCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCccc---HHHH--HhcCCCeEEehHHHHHHHH
Q 003003 376 AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNT---CELL--KSLSGLKVEPVENVASKLF 450 (858)
Q Consensus 376 A~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~---~~~l--~~ag~d~Vi~~~~i~~~ll 450 (858)
+++++|+.+++++++ |..++..++.++.++ +..++|+++.++++ ..++ +.+|++.|+.|+.+++..|
T Consensus 61 ~~~~~a~~vi~~~~~------~~~n~~~~~~~r~~~--~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l 132 (453)
T PRK09496 61 AGAEDADLLIAVTDS------DETNMVACQIAKSLF--GAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREI 132 (453)
T ss_pred cCCCcCCEEEEecCC------hHHHHHHHHHHHHhc--CCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHH
Confidence 999999987776542 233444555566664 46788999988876 3344 7789999999999999999
Q ss_pred HHHHcCCCHHHHHHHHhcccC-----cEEEEecCCCCCCCCHHHHHcc-CC-ceEEEEEEECCEEEECCCCCceecCCCE
Q 003003 451 VQCSRQKGLIKIYRHLLNYRK-----NIFNLWSFPNLAGIKYRQLRRG-FQ-EAVVCGLYRNGKIYFHPNDDETLQPTDK 523 (858)
Q Consensus 451 aq~~~~Pgl~~v~~~Ll~~~g-----~Ei~i~~~p~l~G~tf~el~~~-~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~ 523 (858)
++.+..|+...+ +.+.+ .|+.+.+.+++.|+++.|+..+ .+ ++.++|+.|+|+. +.|++++.|++||+
T Consensus 133 ~~~l~~~~~~~~----~~~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r~~~~-~~p~~~~~l~~gD~ 207 (453)
T PRK09496 133 ARLIEYPGALDV----EEFADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFRGGRL-IIPRGDTVIEAGDE 207 (453)
T ss_pred HHHhcCCCceEe----eeecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEECCEE-EcCCCCcEecCCCE
Confidence 999999998654 33333 3455556678999999999876 44 7999999999985 68999999999999
Q ss_pred EEEEeecCCCCCccccccccccccccchhhhhcccCCCCchHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCcEEEEe
Q 003003 524 ILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLG 603 (858)
Q Consensus 524 LivIa~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~vLI~G 603 (858)
|+++++.++..+ + ......+ ....+|++|||
T Consensus 208 l~v~g~~~~l~~-------------~-------------------------~~~~~~~-----------~~~~~~iiIiG 238 (453)
T PRK09496 208 VYFIGAREHIRA-------------V-------------------------MSEFGRL-----------EKPVKRVMIVG 238 (453)
T ss_pred EEEEeCHHHHHH-------------H-------------------------HHHhCcc-----------CCCCCEEEEEC
Confidence 999999764321 0 0111211 12469999999
Q ss_pred ccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhccccccccccCCCCC
Q 003003 604 WRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEEL 683 (858)
Q Consensus 604 w~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~~a~~~d~~~ 683 (858)
||+.+..+++.|.+ .|..+++++. ++++.+.+.+ ...+ +.++.||+++.++|++++++ + ++
T Consensus 239 ~G~~g~~l~~~L~~---~~~~v~vid~--~~~~~~~~~~----~~~~--~~~i~gd~~~~~~L~~~~~~--~---a~--- 299 (453)
T PRK09496 239 GGNIGYYLAKLLEK---EGYSVKLIER--DPERAEELAE----ELPN--TLVLHGDGTDQELLEEEGID--E---AD--- 299 (453)
T ss_pred CCHHHHHHHHHHHh---CCCeEEEEEC--CHHHHHHHHH----HCCC--CeEEECCCCCHHHHHhcCCc--c---CC---
Confidence 99999999999975 4777999986 3344443332 1223 45699999999999999887 3 34
Q ss_pred CcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCCcceeehhhHHHHHHHH
Q 003003 684 PLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQ 763 (858)
Q Consensus 684 ~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~~d~I~S~~iis~vlAq 763 (858)
.+++++++ |..|+++.+.+|.+ ++ .++|+++.++++.+.++.+|++ .+|.+..+.+..+++
T Consensus 300 --~vi~~~~~----------~~~n~~~~~~~~~~----~~--~~ii~~~~~~~~~~~~~~~g~~-~vi~p~~~~~~~~~~ 360 (453)
T PRK09496 300 --AFIALTND----------DEANILSSLLAKRL----GA--KKVIALVNRPAYVDLVEGLGID-IAISPRQATASEILR 360 (453)
T ss_pred --EEEECCCC----------cHHHHHHHHHHHHh----CC--CeEEEEECCcchHHHHHhcCCC-EEECHHHHHHHHHHH
Confidence 67777654 37899888888874 44 3899999999999999998854 566667778888999
Q ss_pred HhhcccHHHHHHHHHc-cCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCC
Q 003003 764 VVENNELNEVWKDILN-AEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTD 842 (858)
Q Consensus 764 ~a~~~~l~~v~~~Ll~-~eG~ei~~~~~~~~~~~~~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD 842 (858)
....|.+..++....+ .+..|+.+.+.+.+ .+.++.++. ..+|..++|+.++++. ++|.+ ++++++||
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~----~g~~l~el~---l~~~~~i~~i~r~~~~-~~p~~---~~~l~~gD 429 (453)
T PRK09496 361 HVRRGDIVAVHSLRRGAAEAIEAVAHETSKV----VGKPLKDLK---LPKGVLIGAIVRGGEV-IIPTG---DTVIEPGD 429 (453)
T ss_pred HhhccchhhhhhhcCCcEEEEEEEeCCCChh----ccCCHHHcC---CCCCCEEEEEEECCEE-EcCCC---CcEECCCC
Confidence 8888887766653211 12334555444443 356666662 3469999999998887 78864 35999999
Q ss_pred EEEEEecCCC
Q 003003 843 SLIVISELEG 852 (858)
Q Consensus 843 ~LIVI~~~~~ 852 (858)
.|+++++.+.
T Consensus 430 ~l~v~~~~~~ 439 (453)
T PRK09496 430 HVIVFVLDKK 439 (453)
T ss_pred EEEEEEcCcc
Confidence 9999998875
No 2
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=100.00 E-value=6.6e-35 Score=281.49 Aligned_cols=205 Identities=56% Similarity=0.846 Sum_probs=189.4
Q ss_pred cCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEehHHHHHHHHHHHHcCCCHH
Q 003003 381 ARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLI 460 (858)
Q Consensus 381 A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~~~i~~~llaq~~~~Pgl~ 460 (858)
|++||||++++|++|+|+++++++||++.+.++...|+|||+.|.+++++++..||..|.+++++++++|.||++|||++
T Consensus 1 ARaIIiL~~k~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV~dv~skL~VQCsRQ~GL~ 80 (206)
T PF06241_consen 1 ARAIIILAEKEDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETVHDVISKLMVQCSRQPGLA 80 (206)
T ss_pred CceEEEeCCCCCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeHHHHHHHHHHHhccCccHH
Confidence 78999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCCCCccccc
Q 003003 461 KIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLAS 540 (858)
Q Consensus 461 ~v~~~Ll~~~g~Ei~i~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~~~p~~~~ 540 (858)
.+|++||+|+.++||+..+|+|.|++|.|+++.|+++++||+.|+|++.+||++|+++++||+++|||+.++. +++.+|
T Consensus 81 ~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r~GkI~fhP~Dd~vL~e~DklLvIa~~~~~-~~~~~~ 159 (206)
T PF06241_consen 81 QIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKRDGKIVFHPDDDYVLREGDKLLVIAPVNGK-RPQTAY 159 (206)
T ss_pred HHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeeeCCeeEECCCCCceeecCCEEEEEeecCCc-cceEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 667778
Q ss_pred cccccccccchhhhhcccCCCCchHHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q 003003 541 SNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLG 594 (858)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~p~~~~~~~~~~~~~ 594 (858)
.++ +..+....+ +..+.++|..++|++.|+++|.++++|+||+..+
T Consensus 160 ~~v-----~~~n~~~~~---~~~~~~~e~~k~rl~nivkrp~kslsk~Sd~~lg 205 (206)
T PF06241_consen 160 PSV-----RMENITSPE---DVRKHAFELWKTRLENIVKRPNKSLSKGSDWSLG 205 (206)
T ss_pred ccc-----ccccccCCC---chhhhhhhhhHhHHHHHHhCcccccccccccccC
Confidence 766 333444433 3567789999999999999999999999998765
No 3
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.94 E-value=9.6e-26 Score=253.77 Aligned_cols=228 Identities=18% Similarity=0.278 Sum_probs=173.3
Q ss_pred HHHHHHhhheeeecc----CCCChhHHHHHhheeeeeccccccc---CCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 003003 206 SFVVFGGFLFFKFRD----ETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTM-TEQFR 277 (858)
Q Consensus 206 ~iv~ig~~l~~~~eg----~~~s~~da~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~l~Gi~~fa~li~~i-t~~l~ 277 (858)
.+++.|.++++++++ ...|+.|||||++ +|.+|+|||| .|..||+|++++++.|+.+|++.++.+ .+.+.
T Consensus 146 ~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~sv--vt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~ 223 (393)
T PRK10537 146 SLLFYSTFGALYLGDGFSPPIESLSTAFYFSI--VTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIR 223 (393)
T ss_pred HHHHHHHHHHHHHccccCcCCCCHHHHHHhhh--eeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555542 3579999999665 4556778887 456899999999999999998888755 45666
Q ss_pred HHHHHHHhcccccccCCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCC
Q 003003 278 NNMQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNH 357 (858)
Q Consensus 278 ~~~~~lr~G~~~~v~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~ 357 (858)
+++++..+++......+||+||||||+.+..++++|.+.+. ++||+ |.++. ++... .+
T Consensus 224 ~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-------------~vvVI-d~d~~--~~~~~------~g 281 (393)
T PRK10537 224 GNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGLRQRGQ-------------AVTVI-VPLGL--EHRLP------DD 281 (393)
T ss_pred HHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHHHHCCC-------------CEEEE-ECchh--hhhcc------CC
Confidence 67766444442233458999999999999999999987544 56666 44322 22111 14
Q ss_pred ceEEEecCCCCCHHHHHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCC
Q 003003 358 IDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGL 437 (858)
Q Consensus 358 ~~Vv~~~Gd~~~~e~L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d 437 (858)
.++ +.||++++++|++||+++|++++++.++ |.+++.+++++|+++ +++++||++.++++.+.++.+|+|
T Consensus 282 ~~v--I~GD~td~e~L~~AgI~~A~aVI~~t~d------D~~Nl~ivL~ar~l~--p~~kIIa~v~~~~~~~~L~~~GaD 351 (393)
T PRK10537 282 ADL--IPGDSSDSAVLKKAGAARARAILALRDN------DADNAFVVLAAKEMS--SDVKTVAAVNDSKNLEKIKRVHPD 351 (393)
T ss_pred CcE--EEeCCCCHHHHHhcCcccCCEEEEcCCC------hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHhcCCC
Confidence 444 4899999999999999999988775532 577778889999987 578999999999999999999999
Q ss_pred eEEehHHHHHHHHHHHHcCCCHHH-HHHHHh
Q 003003 438 KVEPVENVASKLFVQCSRQKGLIK-IYRHLL 467 (858)
Q Consensus 438 ~Vi~~~~i~~~llaq~~~~Pgl~~-v~~~Ll 467 (858)
.|++|+++.++.|++.+..+.+.. .+.+++
T Consensus 352 ~VIsp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 352 MIFSPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred EEECHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999999999988876654 444444
No 4
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.94 E-value=3.2e-25 Score=243.74 Aligned_cols=606 Identities=15% Similarity=0.195 Sum_probs=378.8
Q ss_pred HHHHHHhhheeeecc-----------CCCChhHHHHHhheeeeeccccccc---CCchhHHHHHHHHHHHHHHHHHHHHH
Q 003003 206 SFVVFGGFLFFKFRD-----------ETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLST 271 (858)
Q Consensus 206 ~iv~ig~~l~~~~eg-----------~~~s~~da~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~l~Gi~~fa~li~~ 271 (858)
.+.+.++-+.|.+|. .-.+++++.| |.++|++|+|||| .|..||+|.++++++|+..|+..++-
T Consensus 259 svwltaag~ihllensgdp~~~f~n~hrltyw~cvy--fl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpe 336 (1103)
T KOG1420|consen 259 SVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVY--FLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPE 336 (1103)
T ss_pred HHHHhhcceeehhhcCCChhHhccCcccchhhheee--eeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHH
Confidence 344555555566551 1246789999 7889999999999 77899999999999999999998888
Q ss_pred HHHHHHHHHHHHHhcccc-cccCCCeEEEEccCc--hHHHHHHHHHhcCccccccccccCCCceEEEEeCC-ChHHHHHH
Q 003003 272 MTEQFRNNMQKLREGAQM-QVLESDHIIVCGVNS--HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL-PRKQMDKL 347 (858)
Q Consensus 272 it~~l~~~~~~lr~G~~~-~v~~~~HIII~G~~~--~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~-~~~~me~l 347 (858)
+.+.+.++- +-|.+. ....+.||||||.-. ....+++.+...+.. .-+-.||.+-.. +.-++|.+
T Consensus 337 iielignr~---kyggeyk~ehgkkhivvcghityesvshflkdflhedrd--------dvdvevvflhr~~pdlelegl 405 (1103)
T KOG1420|consen 337 IIELIGNRK---KYGGEYKAEHGKKHIVVCGHITYESVSHFLKDFLHEDRD--------DVDVEVVFLHRISPDLELEGL 405 (1103)
T ss_pred HHHHHcccc---ccCceeehhcCCeeEEEecceeHHHHHHHHHHHhhcccc--------ccceEEEEEecCCCCcchHHH
Confidence 888776642 334422 233589999999864 566777776654331 112367777554 45667777
Q ss_pred HHhhccccCCceEEEecCCCCCHHHHHhcCccccCeEEEecCCC--CCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCc
Q 003003 348 AENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKG--DRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNP 425 (858)
Q Consensus 348 ~~~~~~d~~~~~Vv~~~Gd~~~~e~L~rA~i~~A~aVIIl~~~~--D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~ 425 (858)
...+ -..|-+-+|...++.+|.|+.+++|++.+|++... |++.+|+.+++.+++++... +++++|+++-.-
T Consensus 406 fkrh-----ft~veffqgtvmnp~dl~rvki~~adaclvlankyc~dpdaedaanimrvisiknys--~dirvi~qlmqy 478 (1103)
T KOG1420|consen 406 FKRH-----FTQVEFFQGTVMNPHDLARVKIESADACLVLANKYCADPDAEDAANIMRVISIKNYS--PDIRVITQLMQY 478 (1103)
T ss_pred Hhhh-----eeeEEEecccccChhhhhheeccccceeeeecccccCCCChhhhhhheEEEEeccCC--CchhHHHHHHHh
Confidence 6532 35677779999999999999999999999999863 56677899998989988875 678888776666
Q ss_pred ccHHHHHh------cCCCeEEehHHHHHHHHHHHHcCCCHHHHHHHHhcc-------------------cCcEEEEecC-
Q 003003 426 NTCELLKS------LSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNY-------------------RKNIFNLWSF- 479 (858)
Q Consensus 426 ~~~~~l~~------ag~d~Vi~~~~i~~~llaq~~~~Pgl~~v~~~Ll~~-------------------~g~Ei~i~~~- 479 (858)
.|..++-. -.||.|||..++.-..+||+|..||.+..+.+|+.. .|.|.|....
T Consensus 479 hnkayllnipswdwk~gddviclaelklgfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~ls 558 (1103)
T KOG1420|consen 479 HNKAYLLNIPSWDWKEGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYLS 558 (1103)
T ss_pred hchheeecCCCcccccCCceEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhcC
Confidence 65554332 346789999999999999999999999999888742 2367887664
Q ss_pred CCCCCCCHHHHHcc-CC--ceEEEEEEE------CCEEEECCCCCceecCCCEEEEEeecCCCCCccccc-----ccccc
Q 003003 480 PNLAGIKYRQLRRG-FQ--EAVVCGLYR------NGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLAS-----SNVAN 545 (858)
Q Consensus 480 p~l~G~tf~el~~~-~~--~aivIGI~r------~G~~~lnP~~d~~L~~GD~LivIa~~~~~~~p~~~~-----~~~~~ 545 (858)
|.++|++|.++... |. +..+++|.- +.++.+||.+..+|++|..=++||.+.+..+..--| +|.+.
T Consensus 559 p~f~g~sfp~a~elcf~klkllllaie~k~een~es~i~inpg~h~kiq~~tqgffiaqsadevkraffyckachddikd 638 (1103)
T KOG1420|consen 559 PAFVGLSFPTACELCFVKLKLLLLAIEYKDEENRESRILINPGNHLKIQEGTQGFFIAQSADEVKRAFFYCKACHDDIKD 638 (1103)
T ss_pred HhhcCCchHHHHHHHHHHHHHhheeeeeccccCccceeEeCCCCCceeccCCceEEEecchHHHHHHHhhHHhhhhcccC
Confidence 47999999986543 32 467777762 346889999999999999999999876443321000 01100
Q ss_pred c----------------ccc-------chhhhhcccCC------CCc-----hHHHHHHHHHHhh-----hhc-CCCCCC
Q 003003 546 R----------------MNI-------SQHLKVLENNS------DST-----SYAIELVNARLEL-----IAK-RPSKPG 585 (858)
Q Consensus 546 ~----------------~~~-------~~~~~~~~~~~------~~~-----~~~~e~~~~~~~~-----i~~-~p~~~~ 585 (858)
. .++ +|.-+..+.-+ ++. ..-..+. ++..+ +.+ .|++.+
T Consensus 639 ~~likkckckn~k~~q~~~ls~~~k~~ngg~k~~p~~sp~~~r~~ts~~~g~~~~~~f~-~~~mkydstgmfhwcp~k~l 717 (1103)
T KOG1420|consen 639 PKLIKKCKCKNLKDEQPSTLSPKKKQRNGGMKNSPNTSPKLMRHDTSLIPGNDQIDNFD-SHVMKYDSTGMFHWCPPKEL 717 (1103)
T ss_pred HHHHHhcCCCcccccCchhcCccccCCCCCccCCCCCCHHHhcCCcccCCCCcchhhhh-hhhhccccccceeecCchhH
Confidence 0 000 00000000000 000 0000000 00000 001 122221
Q ss_pred CC----CC-CCCCCCCCcEEEEeccccHHHHH------HHHhcc---cCCCceEEEEcCCCchhhhhhhcccCCCCcCCc
Q 003003 586 SK----AT-DGNLGPKERILLLGWRPDVVEMI------EEYDNY---LGPGSVLEILSDVPLDDRKRASNAIGHGKLKNV 651 (858)
Q Consensus 586 ~~----~~-~~~~~~~~~vLI~Gw~~~~~~li------~eL~~~---~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~ 651 (858)
.+ .+ ..+.-..+||++|=++..-..+| .-|... .-.-.+|+++... +-..+.-.. ...++.+
T Consensus 718 edcil~r~qaamtvlnghvvvclfad~dspliglrnlvmplrasnfhyhelkhvvivgsi--eylrrewkt--l~nlpki 793 (1103)
T KOG1420|consen 718 EDCILTRSQAAMTVLNGHVVVCLFADVDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSI--EYLRREWKT--LHNLPKI 793 (1103)
T ss_pred HHHhhhhhHhhheeecCcEEEEEecCCCCchhhhhhheeeccccccchhheeeEEEEccH--HHHHHHHHH--HhCCCce
Confidence 11 01 12234579999999987544333 233211 0122367777753 211111110 1135554
Q ss_pred eEEEEECCCCCHHHHHhccccccccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhh--hC-------
Q 003003 652 QVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNK--LG------- 722 (858)
Q Consensus 652 ~V~~i~GD~td~~~L~ea~i~i~~a~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~--~g------- 722 (858)
. ...|.|.++..|+..+|+ -+| .++|++-.---..|+.-+|.+.|+..|.+|.++=+ .|
T Consensus 794 s--ilngsplsradlravnin-----lcd-----mcvilsa~vpn~ddttladkeailaslnikamqfddtigvl~~r~q 861 (1103)
T KOG1420|consen 794 S--ILNGSPLSRADLRAVNIN-----LCD-----MCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQ 861 (1103)
T ss_pred e--ecCCCCCchhhhhhcccc-----ccc-----eeEEEecCCCCCCCcccccHHHHHhhccceeeeeccceeeeeccCC
Confidence 4 499999999999999999 355 68888632212357889999999999999876422 11
Q ss_pred ----------CC------------cceEEEEEEccchhhHhhhcCCCc---ceeehh----------hHHHHHHHHH---
Q 003003 723 ----------VK------------VQNLVAEIVDSKLGKQIARNKPSL---TYIAAE----------EIMSLVTAQV--- 764 (858)
Q Consensus 723 ----------~~------------~~~IIaEi~~~~~~~~l~~~g~~~---d~I~S~----------~iis~vlAq~--- 764 (858)
.| ++.+|+|+.++.|++.+.+-..++ +..+++ .+...+|...
T Consensus 862 ~fd~~ssp~gspi~lq~~g~~~g~nvpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfn 941 (1103)
T KOG1420|consen 862 GFDPPSSPDGSPIHLQQPGITTGVNVPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFN 941 (1103)
T ss_pred CCCCCCCCCCCCeEEecCCcccccCchhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceec
Confidence 00 257899999999987776532211 222111 1111222221
Q ss_pred -------------hhcccHHHHHHHHHcc-CCC----------eEEEEeccc----cccCCCCCCHHHHHHHHH-hcCcE
Q 003003 765 -------------VENNELNEVWKDILNA-EGD----------EIYVKDISL----YMKEGENPSFFELSERAH-LRREV 815 (858)
Q Consensus 765 -------------a~~~~l~~v~~~Ll~~-eG~----------ei~~~~~~~----~~~~~~~~sF~~L~~~a~-~~g~i 815 (858)
.+.|+++.++.|--+- +|- .-.+-.++. |..-|++-+|+++.-.|. ..|..
T Consensus 942 dnaltlirtlvtggatpelelilaegaglrggystpetlsnrdrcrvaqisl~dgp~a~~g~~g~ygdlf~~alk~ygml 1021 (1103)
T KOG1420|consen 942 DNALTLIRTLVTGGATPELELILAEGAGLRGGYSTPETLSNRDRCRVAQISLLDGPFADLGDGGCYGDLFCKALKTYGML 1021 (1103)
T ss_pred chHHHHHHHHHhCCCChhhHHHHhccccccCCCCChhhhccccceeeeeeeeecCchhhhccCCchHHHHHHHHHHhCce
Confidence 2344455444432110 110 112222222 334467889999987774 68999
Q ss_pred EEEEEEC------------CeEEeCCCCCCCCccccCCCEEEEEecCC
Q 003003 816 AIGYVKD------------NKKVINPVPKSEPLSLTLTDSLIVISELE 851 (858)
Q Consensus 816 lIG~~~~------------~~~iiNP~~k~~~~~l~~gD~LIVI~~~~ 851 (858)
+||++|- .-++.||| .++.+.+.|.+.|+-..+
T Consensus 1022 ciglyrlrd~~~s~~~s~kryvitnpp---~ef~l~ptd~vfvlmqfd 1066 (1103)
T KOG1420|consen 1022 CIGLYRLRDAHLSTSQSTKRYVITNPP---YEFELVPTDLVFVLMQFD 1066 (1103)
T ss_pred eEEEeeeeccccCcchhhceeEecCCc---hhheecccceEEEEEeeC
Confidence 9998762 13678886 368999999999986543
No 5
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.5e-22 Score=216.87 Aligned_cols=368 Identities=15% Similarity=0.195 Sum_probs=261.6
Q ss_pred CCCCcccc---ccCCCCCCcccccccccCCccc--chhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhheeee
Q 003003 144 ATGSPFAC---MSNSLNKPMPLKLDVSLPSLQD--VRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKF 218 (858)
Q Consensus 144 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rl~y~f~~~l~~n~~~~l~~ll~~~l~iv~ig~~l~~~~ 218 (858)
+|+.||-- ++.-.---+|++++||+++-+. +-..+.|-.+.-+..+.+... +++-+++|+++.-++|+-.+..
T Consensus 133 itsfpfii~ifipsltylyvpvflncwlakgalqammndl~r~~~~s~sal~~ql~--ll~s~l~clift~~c~i~h~qr 210 (1087)
T KOG3193|consen 133 ITSFPFIISIFIPSLTYLYVPVFLNCWLAKGALQAMMNDLNRKSFISSSALFRQLL--LLFSVLACLIFTGMCSIEHLQR 210 (1087)
T ss_pred hhcccceeeeeccccceeechhhhhhhhhhhHHHHhhhhHhHHhhhhHHHHHHHHH--HHHHHHHHHHHhhhhhHHHHHH
Confidence 67888853 2333334688999999998754 233344444333333333221 2333445555555566665544
Q ss_pred -ccCCCChhHHHHHhheeeeeccccccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccc--cc
Q 003003 219 -RDETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR-NNMQKLREGAQM--QV 291 (858)
Q Consensus 219 -eg~~~s~~da~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~-~~~~~lr~G~~~--~v 291 (858)
.|...+++.++| |.++|.+|+|||| .-++..+..++++...++++..-+ +.+. ..+++.+.|... .-
T Consensus 211 a~~k~i~lf~s~y--~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~----~~l~~tw~erqk~g~~~ss~~ 284 (1087)
T KOG3193|consen 211 ARGKRIDLFTSFY--FVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQL----DELGQTWSERQKSGTDFSSWN 284 (1087)
T ss_pred ccCceeeeeeeEE--EEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHH----HHHHHHHHHHhhcCCCccccc
Confidence 366789999999 7788889999998 346788888888888776653332 3332 344555666531 11
Q ss_pred cCCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHh-hccccCCceEEEecCCCCCH
Q 003003 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN-IAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 292 ~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~-~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
..+.|||||-..-....+.+-|.+.+.++ .-++-.||++++ .+++.-.+- +..++++.+|.|++|+....
T Consensus 285 ~~e~hvvv~~ttl~~~~i~dfl~efyahp------~~q~~~ivllsp---~eld~~~rmllkiplwnnrvhyv~gs~lrd 355 (1087)
T KOG3193|consen 285 GVESHVVVTITTLEVEFIRDFLEEFYAHP------ENQRIQIVLLSP---AELDNQTRMLLKIPLWNNRVHYVRGSSLRD 355 (1087)
T ss_pred cccceEEEEEeeeeHHHHHHHHHHHhcCc------ccccEEEEEech---HHhcchhhhheeccccccceeeeccccccc
Confidence 24889999999988888888777754321 011235777754 233321111 22456678899999999999
Q ss_pred HHHHhcCccccCeEEEecCCC--CCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEehHHHHHH
Q 003003 371 KSYERAAANKARAIIILPTKG--DRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASK 448 (858)
Q Consensus 371 e~L~rA~i~~A~aVIIl~~~~--D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~~~i~~~ 448 (858)
++|+||++..|++.+|++... +...+|..+++...|++... |++|..+++..++..-+++.+ .+++|.+++.-.
T Consensus 356 ~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfa--pnv~qyvqifr~e~k~hi~~a--e~~icedefkya 431 (1087)
T KOG3193|consen 356 EDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFA--PNVKQYVQIFRAETKMHIEHA--EVLICEDEFKYA 431 (1087)
T ss_pred chhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcC--CchHHHhhhhchhhhhhhhhh--eeEEehhhHHHH
Confidence 999999999999999998753 33456888999999999986 689999999999887777665 479999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhcc--------------------cCcEEEEec--CC----CCCCCCHHHHHccCC---ceEE
Q 003003 449 LFVQCSRQKGLIKIYRHLLNY--------------------RKNIFNLWS--FP----NLAGIKYRQLRRGFQ---EAVV 499 (858)
Q Consensus 449 llaq~~~~Pgl~~v~~~Ll~~--------------------~g~Ei~i~~--~p----~l~G~tf~el~~~~~---~aiv 499 (858)
++|+.+.+||++.++.-|+.. .|+|+|-.. .+ +++||+|....++.. |+-+
T Consensus 432 llannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~ey~gksfs~~sfhahk~ygi~l 511 (1087)
T KOG3193|consen 432 LLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCEYVGKSFSSTSFHAHKEYGIGL 511 (1087)
T ss_pred HHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeeeecccccchhhhhhhhhcCeEE
Confidence 999999999999998877753 358887543 22 789999998776532 7889
Q ss_pred EEEEECC---EEEECCCCCceecCCCEEEEEeecCC
Q 003003 500 CGLYRNG---KIYFHPNDDETLQPTDKILFIAPIHG 532 (858)
Q Consensus 500 IGI~r~G---~~~lnP~~d~~L~~GD~LivIa~~~~ 532 (858)
||+.-+| .+.+||.+...+++.|.+|+++-+.+
T Consensus 512 i~v~p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~e 547 (1087)
T KOG3193|consen 512 IAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTNE 547 (1087)
T ss_pred EEEcCCCCcceeecCCCcccccCCCCeEEEEecccc
Confidence 9998644 57899999999999999999987754
No 6
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.1e-19 Score=191.00 Aligned_cols=206 Identities=20% Similarity=0.284 Sum_probs=168.1
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
.++|+|.|+.|..+++.|.+.++ .||++ |++++..++.... ......+.||++++++|++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-------------~Vv~I-d~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~ 61 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-------------NVVLI-DRDEERVEEFLAD------ELDTHVVIGDATDEDVLEE 61 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-------------ceEEE-EcCHHHHHHHhhh------hcceEEEEecCCCHHHHHh
Confidence 47999999999999999998765 46655 8888777763321 1334445899999999999
Q ss_pred cCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEehHHHHHHHHHHHHc
Q 003003 376 AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSR 455 (858)
Q Consensus 376 A~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~~~i~~~llaq~~~ 455 (858)
||+++|+++++++. .| ..|.+.|.++.+.+. ..++||+++++++.+.++..|++++++|+...+..+++...
T Consensus 62 agi~~aD~vva~t~-~d----~~N~i~~~la~~~~g---v~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~ 133 (225)
T COG0569 62 AGIDDADAVVAATG-ND----EVNSVLALLALKEFG---VPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIV 133 (225)
T ss_pred cCCCcCCEEEEeeC-CC----HHHHHHHHHHHHhcC---CCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhc
Confidence 99999998766554 33 478888989877663 34579999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcccC-----cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEee
Q 003003 456 QKGLIKIYRHLLNYRK-----NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAP 529 (858)
Q Consensus 456 ~Pgl~~v~~~Ll~~~g-----~Ei~i~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~ 529 (858)
.|++..+ +.+.+ -++.+.+.++++|++++|+..+++ ++++++|.|+|...+.|++++.|++||++++++.
T Consensus 134 ~p~~~~~----~~~~~~~~~~~~~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~~~~~~~p~g~~~l~~gD~l~v~~~ 209 (225)
T COG0569 134 TPGALDV----LELAGGDAEVIEEKVAEDSPLAGKTLRELDLRLPYDVNVIAIKRGGNELIIPRGDTTLEAGDRLIVIGA 209 (225)
T ss_pred CCChheE----EeecCCcceEEEEEecCCCccCCcCHHHhcccCCCCcEEEEEecCCCceecCCCCCEecCCCEEEEEEc
Confidence 9999877 34432 234444566899999999997775 7999999998734689999999999999999999
Q ss_pred cCCC
Q 003003 530 IHGK 533 (858)
Q Consensus 530 ~~~~ 533 (858)
.+..
T Consensus 210 ~~~i 213 (225)
T COG0569 210 PEAL 213 (225)
T ss_pred HHHH
Confidence 8644
No 7
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.81 E-value=1.4e-18 Score=201.03 Aligned_cols=210 Identities=16% Similarity=0.206 Sum_probs=168.6
Q ss_pred cCCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 292 ~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
..++|+||||+|+.|..++++|.+.+. .++++ |.+++..+.+.+.. .++.++.||+++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-------------~v~vi-d~~~~~~~~~~~~~------~~~~~i~gd~~~~~ 288 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-------------SVKLI-ERDPERAEELAEEL------PNTLVLHGDGTDQE 288 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-------------eEEEE-ECCHHHHHHHHHHC------CCCeEEECCCCCHH
Confidence 358999999999999999999987554 56665 88887777765432 22334589999999
Q ss_pred HHHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEehHHHHHHHHH
Q 003003 372 SYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFV 451 (858)
Q Consensus 372 ~L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~~~i~~~lla 451 (858)
+|+++++++|++++++++ + |..++.+.+.++.++ ..++|+++.++++.+.++.+|++.|++++.++++.++
T Consensus 289 ~L~~~~~~~a~~vi~~~~-~-----~~~n~~~~~~~~~~~---~~~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~ 359 (453)
T PRK09496 289 LLEEEGIDEADAFIALTN-D-----DEANILSSLLAKRLG---AKKVIALVNRPAYVDLVEGLGIDIAISPRQATASEIL 359 (453)
T ss_pred HHHhcCCccCCEEEECCC-C-----cHHHHHHHHHHHHhC---CCeEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHH
Confidence 999999999998776554 2 234455666667664 3478999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhc-ccCcEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEeec
Q 003003 452 QCSRQKGLIKIYRHLLN-YRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPI 530 (858)
Q Consensus 452 q~~~~Pgl~~v~~~Ll~-~~g~Ei~i~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~ 530 (858)
+.+..|++..++....+ ....|+++.+.++++|+++.|+... .++.++|+.|+|++ ++|+++++|++||.|+++++.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~g~~l~el~l~-~~~~i~~i~r~~~~-~~p~~~~~l~~gD~l~v~~~~ 437 (453)
T PRK09496 360 RHVRRGDIVAVHSLRRGAAEAIEAVAHETSKVVGKPLKDLKLP-KGVLIGAIVRGGEV-IIPTGDTVIEPGDHVIVFVLD 437 (453)
T ss_pred HHhhccchhhhhhhcCCcEEEEEEEeCCCChhccCCHHHcCCC-CCCEEEEEEECCEE-EcCCCCcEECCCCEEEEEEcC
Confidence 99999998776431111 1225677777889999999999653 37999999999997 799999999999999999998
Q ss_pred CC
Q 003003 531 HG 532 (858)
Q Consensus 531 ~~ 532 (858)
++
T Consensus 438 ~~ 439 (453)
T PRK09496 438 KK 439 (453)
T ss_pred cc
Confidence 86
No 8
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.61 E-value=3.8e-14 Score=168.48 Aligned_cols=139 Identities=13% Similarity=0.116 Sum_probs=114.7
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
+||+||||+|+.|..++++|.+.++ +++++ |.|++..+++.+ . +.+++ .||++++++|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-------------~vvvI-d~d~~~~~~~~~-~-----g~~~i--~GD~~~~~~L 474 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-------------PLVVI-ETSRTRVDELRE-R-----GIRAV--LGNAANEEIM 474 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-------------CEEEE-ECCHHHHHHHHH-C-----CCeEE--EcCCCCHHHH
Confidence 7999999999999999999998765 56665 888888877653 1 45554 7999999999
Q ss_pred HhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEehHHHHHHHHHHH
Q 003003 374 ERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQC 453 (858)
Q Consensus 374 ~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~~~i~~~llaq~ 453 (858)
+++++++|++++++.+++ .++...+.+++..+ ++.++||+++++++.+.++.+|+|+|++|++..++.+++.
T Consensus 475 ~~a~i~~a~~viv~~~~~------~~~~~iv~~~~~~~--~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~ 546 (558)
T PRK10669 475 QLAHLDCARWLLLTIPNG------YEAGEIVASAREKR--PDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLEL 546 (558)
T ss_pred HhcCccccCEEEEEcCCh------HHHHHHHHHHHHHC--CCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHH
Confidence 999999999887766532 22223344556654 5789999999999999999999999999999999999999
Q ss_pred HcCCCHHHH
Q 003003 454 SRQKGLIKI 462 (858)
Q Consensus 454 ~~~Pgl~~v 462 (858)
..+|+..++
T Consensus 547 l~~~~~~~~ 555 (558)
T PRK10669 547 LETPPAGEV 555 (558)
T ss_pred hcCCCcccc
Confidence 999998765
No 9
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.56 E-value=7.8e-14 Score=135.98 Aligned_cols=153 Identities=20% Similarity=0.364 Sum_probs=131.0
Q ss_pred EEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCCcceeehhhHHHHHHHHHh
Q 003003 686 SIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVV 765 (858)
Q Consensus 686 sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~~d~I~S~~iis~vlAq~a 765 (858)
+||||+.. ++..++|+++++++|.++.+.+.. + .++|+|+.+..|..++..++ +..+=.-++++|++|.|.+
T Consensus 3 aIIiL~~k----~d~ye~Da~a~lsVLaL~~v~e~~--~-g~vIVE~S~~~t~~LlKsv~-G~~VetV~dv~skL~VQCs 74 (206)
T PF06241_consen 3 AIIILAEK----EDRYESDADAFLSVLALQPVKEGL--S-GHVIVEVSDSDTEQLLKSVS-GLKVETVHDVISKLMVQCS 74 (206)
T ss_pred eEEEeCCC----CCcchhhHHHHHHHhhcccccccC--c-ccEEEEecCCChHHHHHhhc-CceeeeHHHHHHHHHHHhc
Confidence 79999854 578899999999999999876654 2 58999999999999998876 3233333789999999999
Q ss_pred hcccHHHHHHHHHccCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEE
Q 003003 766 ENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLI 845 (858)
Q Consensus 766 ~~~~l~~v~~~Ll~~eG~ei~~~~~~~~~~~~~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LI 845 (858)
.+|++..+|++||+.+-.+||++..+.+ .++.|.++... ..+.+++|+.++|+..+||. + +..+.+||+|+
T Consensus 75 RQ~GL~~Iy~~iL~~~k~vf~l~~~P~L----~Gm~y~dvr~~--Fpdav~CGv~r~GkI~fhP~-D--d~vL~e~DklL 145 (206)
T PF06241_consen 75 RQPGLAQIYEDILGFEKNVFNLKRWPQL----DGMKYRDVRRS--FPDAVVCGVKRDGKIVFHPD-D--DYVLREGDKLL 145 (206)
T ss_pred cCccHHHHHHHHhCCCCcEEEEecCccc----CCcCHHHHHhc--CCcceeeeeeeCCeeEECCC-C--CceeecCCEEE
Confidence 9999999999999999999999999876 57899888553 78899999999999999995 3 45899999999
Q ss_pred EEecCCCCcC
Q 003003 846 VISELEGEQP 855 (858)
Q Consensus 846 VI~~~~~~~~ 855 (858)
||++..+.+|
T Consensus 146 vIa~~~~~~~ 155 (206)
T PF06241_consen 146 VIAPVNGKRP 155 (206)
T ss_pred EEeecCCccc
Confidence 9999987665
No 10
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=4.7e-13 Score=140.91 Aligned_cols=209 Identities=18% Similarity=0.204 Sum_probs=151.7
Q ss_pred cEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhh-hcccCCCCcCCceEEEEECCCCCHHHHHhcccccccc
Q 003003 598 RILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRA-SNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNS 676 (858)
Q Consensus 598 ~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~-l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~~a 676 (858)
+++|+|-|+.+..+++.|. ..|-.+++++. ++++++. +++ ....+.++||+++.++|++||+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~---~~g~~Vv~Id~--d~~~~~~~~~~-------~~~~~~v~gd~t~~~~L~~agi~---- 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELS---EEGHNVVLIDR--DEERVEEFLAD-------ELDTHVVIGDATDEDVLEEAGID---- 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHH---hCCCceEEEEc--CHHHHHHHhhh-------hcceEEEEecCCCHHHHHhcCCC----
Confidence 6899999999999999996 45777888887 4555443 221 34566799999999999999998
Q ss_pred ccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCCcceeehhhH
Q 003003 677 FKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEI 756 (858)
Q Consensus 677 ~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~~d~I~S~~i 756 (858)
++| .+++.+++| ..|+...+.+++. +|+| ++|+++.++.+.+.+.+.|++ ..|.+...
T Consensus 66 -~aD-----~vva~t~~d----------~~N~i~~~la~~~---~gv~--~viar~~~~~~~~~~~~~g~~-~ii~Pe~~ 123 (225)
T COG0569 66 -DAD-----AVVAATGND----------EVNSVLALLALKE---FGVP--RVIARARNPEHEKVLEKLGAD-VIISPEKL 123 (225)
T ss_pred -cCC-----EEEEeeCCC----------HHHHHHHHHHHHh---cCCC--cEEEEecCHHHHHHHHHcCCc-EEECHHHH
Confidence 345 888888754 6777666666542 5774 899999999999999998844 67777788
Q ss_pred HHHHHHHHhhcccHHHHHHHHHc-cCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCC
Q 003003 757 MSLVTAQVVENNELNEVWKDILN-AEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEP 835 (858)
Q Consensus 757 is~vlAq~a~~~~l~~v~~~Ll~-~eG~ei~~~~~~~~~~~~~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~ 835 (858)
++..++.....|.+..+...-.+ .+-.++.+.+.+.+ .+.+-.|+..+ ...+..++++.+++...+.|.|.
T Consensus 124 ~~~~l~~~i~~p~~~~~~~~~~~~~~~~~~~v~~~~~~----~g~~L~el~~~-~~~~~~vvai~r~~~~~~~p~g~--- 195 (225)
T COG0569 124 AAKRLARLIVTPGALDVLELAGGDAEVIEEKVAEDSPL----AGKTLRELDLR-LPYDVNVIAIKRGGNELIIPRGD--- 195 (225)
T ss_pred HHHHHHHHhcCCChheEEeecCCcceEEEEEecCCCcc----CCcCHHHhccc-CCCCcEEEEEecCCCceecCCCC---
Confidence 89999999999987766553322 11112222332233 34455555411 24788899999987677888653
Q ss_pred ccccCCCEEEEEecCCC
Q 003003 836 LSLTLTDSLIVISELEG 852 (858)
Q Consensus 836 ~~l~~gD~LIVI~~~~~ 852 (858)
+.+++||+++|++..+.
T Consensus 196 ~~l~~gD~l~v~~~~~~ 212 (225)
T COG0569 196 TTLEAGDRLIVIGAPEA 212 (225)
T ss_pred CEecCCCEEEEEEcHHH
Confidence 59999999999998764
No 11
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.49 E-value=1.3e-12 Score=156.35 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=107.6
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
.++|+||||+|+.|..++++|.+.+. +++++ |.|++..+.+.+ + |.+++ .||+++++.
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g~-------------~vvvI-D~d~~~v~~~~~-~-----g~~v~--~GDat~~~~ 456 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMANKM-------------RITVL-ERDISAVNLMRK-Y-----GYKVY--YGDATQLEL 456 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhCCC-------------CEEEE-ECCHHHHHHHHh-C-----CCeEE--EeeCCCHHH
Confidence 47999999999999999999998655 56666 888888887653 2 56665 799999999
Q ss_pred HHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEehHHHHHHHHHH
Q 003003 373 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQ 452 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~~~i~~~llaq 452 (858)
|++|++++|++++++.++ |.+++..+..+|+.+ |+.+++||++|+++.+.++.+|+|.|++.....+..+++
T Consensus 457 L~~agi~~A~~vv~~~~d------~~~n~~i~~~~r~~~--p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~ 528 (601)
T PRK03659 457 LRAAGAEKAEAIVITCNE------PEDTMKIVELCQQHF--PHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGR 528 (601)
T ss_pred HHhcCCccCCEEEEEeCC------HHHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHH
Confidence 999999999987776542 455666667778765 688999999999999999999999999887666666665
Q ss_pred HH
Q 003003 453 CS 454 (858)
Q Consensus 453 ~~ 454 (858)
.+
T Consensus 529 ~~ 530 (601)
T PRK03659 529 KT 530 (601)
T ss_pred HH
Confidence 53
No 12
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.45 E-value=8.4e-13 Score=124.04 Aligned_cols=116 Identities=22% Similarity=0.332 Sum_probs=94.4
Q ss_pred EEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHhc
Q 003003 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERA 376 (858)
Q Consensus 297 III~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~rA 376 (858)
|||||||+.|..++++|.+.+. +|+++ |.+++..+++.+. +..+ +.||++++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-------------~vvvi-d~d~~~~~~~~~~------~~~~--i~gd~~~~~~l~~a 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-------------DVVVI-DRDPERVEELREE------GVEV--IYGDATDPEVLERA 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-------------EEEEE-ESSHHHHHHHHHT------TSEE--EES-TTSHHHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-------------EEEEE-ECCcHHHHHHHhc------cccc--ccccchhhhHHhhc
Confidence 6999999999999999998432 57766 8888888877652 4554 47999999999999
Q ss_pred CccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEeh
Q 003003 377 AANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPV 442 (858)
Q Consensus 377 ~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~ 442 (858)
++++|+++++++++ |..++.+++.+|+++ +..++++++.++++.+.++.+|+|.|+.|
T Consensus 59 ~i~~a~~vv~~~~~------d~~n~~~~~~~r~~~--~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 59 GIEKADAVVILTDD------DEENLLIALLARELN--PDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp TGGCESEEEEESSS------HHHHHHHHHHHHHHT--TTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred CccccCEEEEccCC------HHHHHHHHHHHHHHC--CCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 99999988886642 577777888888876 56899999999999999999999999976
No 13
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.44 E-value=6.3e-12 Score=150.75 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=106.9
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
.++|+||||+|+.|+.++++|.+.+. +++++ |.|++..+.+.+ + |.+++ .||+++++.
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g~-------------~vvvI-D~d~~~v~~~~~-~-----g~~v~--~GDat~~~~ 456 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSSGV-------------KMTVL-DHDPDHIETLRK-F-----GMKVF--YGDATRMDL 456 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhCCC-------------CEEEE-ECCHHHHHHHHh-c-----CCeEE--EEeCCCHHH
Confidence 37999999999999999999998655 56666 899988888754 1 56665 699999999
Q ss_pred HHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEehHHHHHHHHHH
Q 003003 373 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQ 452 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~~~i~~~llaq 452 (858)
|+++|+++|+.+|++.++ |..++.++..+|+.+ |+.+++||.+|+++.+.++.+|+|.|+......+..+++
T Consensus 457 L~~agi~~A~~vvv~~~d------~~~n~~i~~~ar~~~--p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~ 528 (621)
T PRK03562 457 LESAGAAKAEVLINAIDD------PQTSLQLVELVKEHF--PHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGR 528 (621)
T ss_pred HHhcCCCcCCEEEEEeCC------HHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHH
Confidence 999999999987776542 345566667778775 688999999999999999999999998876656666665
Q ss_pred HH
Q 003003 453 CS 454 (858)
Q Consensus 453 ~~ 454 (858)
.+
T Consensus 529 ~~ 530 (621)
T PRK03562 529 LV 530 (621)
T ss_pred HH
Confidence 54
No 14
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.34 E-value=1e-11 Score=140.62 Aligned_cols=142 Identities=18% Similarity=0.255 Sum_probs=108.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhcccccc
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 674 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~ 674 (858)
.++|++|||||+.+..++++|.+. |..++++++. +. ++. ..++ +.++.||++|+++|+++|++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~---g~~vvVId~d--~~-~~~-------~~~g--~~vI~GD~td~e~L~~AgI~-- 301 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQR---GQAVTVIVPL--GL-EHR-------LPDD--ADLIPGDSSDSAVLKKAGAA-- 301 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHC---CCCEEEEECc--hh-hhh-------ccCC--CcEEEeCCCCHHHHHhcCcc--
Confidence 379999999999999999999753 5568888752 11 111 1123 34699999999999999988
Q ss_pred ccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCCcceeehh
Q 003003 675 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 754 (858)
Q Consensus 675 ~a~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~~d~I~S~ 754 (858)
+| + ++++++++ |++|+++.+.+|+++|+ .+||+++.++++.+.++++|++ .+|.++
T Consensus 302 ~A---~-----aVI~~t~d----------D~~Nl~ivL~ar~l~p~-----~kIIa~v~~~~~~~~L~~~GaD-~VIsp~ 357 (393)
T PRK10537 302 RA---R-----AILALRDN----------DADNAFVVLAAKEMSSD-----VKTVAAVNDSKNLEKIKRVHPD-MIFSPQ 357 (393)
T ss_pred cC---C-----EEEEcCCC----------hHHHHHHHHHHHHhCCC-----CcEEEEECCHHHHHHHHhcCCC-EEECHH
Confidence 43 2 67777764 58999999999998776 7999999999999999998865 677777
Q ss_pred hHHHHHHHHHhhccc-HHHHHHHH
Q 003003 755 EIMSLVTAQVVENNE-LNEVWKDI 777 (858)
Q Consensus 755 ~iis~vlAq~a~~~~-l~~v~~~L 777 (858)
++.+..+++.+..+. -++...++
T Consensus 358 ~l~g~~la~~l~g~~I~~~~i~~~ 381 (393)
T PRK10537 358 LLGSELLARTLNGEEIDNDMITSM 381 (393)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHH
Confidence 888999998865554 33344433
No 15
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.16 E-value=1.6e-10 Score=108.53 Aligned_cols=111 Identities=15% Similarity=0.262 Sum_probs=87.4
Q ss_pred EEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhcccccccccc
Q 003003 599 ILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFK 678 (858)
Q Consensus 599 vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~~a~~ 678 (858)
|+|||||+.+..+++.|.+ .+..+++++. ++++.+.+.+ ..+.++.||+++.++|++++++ ++
T Consensus 1 vvI~G~g~~~~~i~~~L~~---~~~~vvvid~--d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~--~a-- 63 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE---GGIDVVVIDR--DPERVEELRE--------EGVEVIYGDATDPEVLERAGIE--KA-- 63 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH---TTSEEEEEES--SHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGG--CE--
T ss_pred eEEEcCCHHHHHHHHHHHh---CCCEEEEEEC--CcHHHHHHHh--------cccccccccchhhhHHhhcCcc--cc--
Confidence 6999999999999999975 3457999997 4455444332 1245699999999999999888 33
Q ss_pred CCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCC
Q 003003 679 DGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPS 747 (858)
Q Consensus 679 ~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~ 747 (858)
+ ++++++++ |..|+.+++.+|++.++ .++|+++.++++.+.++.+|++
T Consensus 64 -~-----~vv~~~~~----------d~~n~~~~~~~r~~~~~-----~~ii~~~~~~~~~~~l~~~g~d 111 (116)
T PF02254_consen 64 -D-----AVVILTDD----------DEENLLIALLARELNPD-----IRIIARVNDPENAELLRQAGAD 111 (116)
T ss_dssp -S-----EEEEESSS----------HHHHHHHHHHHHHHTTT-----SEEEEEESSHHHHHHHHHTT-S
T ss_pred -C-----EEEEccCC----------HHHHHHHHHHHHHHCCC-----CeEEEEECCHHHHHHHHHCCcC
Confidence 3 78888764 58999999999998777 6999999999999999998754
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.02 E-value=1.4e-09 Score=129.74 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=108.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhcccccc
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 674 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~ 674 (858)
.++|++|||+|+.++.++++|.+ .|..+++++. ++++.+.+. +..+..++||++|+++|++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~---~g~~vvvId~--d~~~~~~~~--------~~g~~~i~GD~~~~~~L~~a~i~-- 480 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLA---AGIPLVVIET--SRTRVDELR--------ERGIRAVLGNAANEEIMQLAHLD-- 480 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHH---CCCCEEEEEC--CHHHHHHHH--------HCCCeEEEcCCCCHHHHHhcCcc--
Confidence 47999999999999999999974 3566899986 456655433 23456799999999999999988
Q ss_pred ccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCCcceeehh
Q 003003 675 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 754 (858)
Q Consensus 675 ~a~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~~d~I~S~ 754 (858)
+ +| .+++.+++| .+|..+.+.+|..+++ .+||+++.++++.+.++++|++ .+|.++
T Consensus 481 ~---a~-----~viv~~~~~----------~~~~~iv~~~~~~~~~-----~~iiar~~~~~~~~~l~~~Gad-~vv~p~ 536 (558)
T PRK10669 481 C---AR-----WLLLTIPNG----------YEAGEIVASAREKRPD-----IEIIARAHYDDEVAYITERGAN-QVVMGE 536 (558)
T ss_pred c---cC-----EEEEEcCCh----------HHHHHHHHHHHHHCCC-----CeEEEEECCHHHHHHHHHcCCC-EEEChH
Confidence 3 33 677766543 5676677778886555 6999999999999999998865 777778
Q ss_pred hHHHHHHHHHhhcccHHH
Q 003003 755 EIMSLVTAQVVENNELNE 772 (858)
Q Consensus 755 ~iis~vlAq~a~~~~l~~ 772 (858)
+.+++-+++...+|...+
T Consensus 537 ~~~a~~i~~~l~~~~~~~ 554 (558)
T PRK10669 537 REIARTMLELLETPPAGE 554 (558)
T ss_pred HHHHHHHHHHhcCCCccc
Confidence 888988888877776443
No 17
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.88 E-value=1.1e-08 Score=122.64 Aligned_cols=120 Identities=9% Similarity=0.066 Sum_probs=95.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhcccccc
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 674 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~ 674 (858)
.++|++|||+|+.+..+++.|.+ .|.++++++. ++++.+.+.+ .....+.||+++.++|+++|++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~--d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~-- 463 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMA---NKMRITVLER--DISAVNLMRK--------YGYKVYYGDATQLELLRAAGAE-- 463 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHh---CCCCEEEEEC--CHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCc--
Confidence 46899999999999999999975 4667999996 4556554432 2345599999999999999998
Q ss_pred ccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCCcceeehh
Q 003003 675 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAE 754 (858)
Q Consensus 675 ~a~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~~d~I~S~ 754 (858)
++ + .+|+++|+ |..|+.+...+|+++|+ .+||+++.++++.+.++++|++ .|+.+
T Consensus 464 ~A---~-----~vv~~~~d----------~~~n~~i~~~~r~~~p~-----~~IiaRa~~~~~~~~L~~~Ga~--~vv~e 518 (601)
T PRK03659 464 KA---E-----AIVITCNE----------PEDTMKIVELCQQHFPH-----LHILARARGRVEAHELLQAGVT--QFSRE 518 (601)
T ss_pred cC---C-----EEEEEeCC----------HHHHHHHHHHHHHHCCC-----CeEEEEeCCHHHHHHHHhCCCC--EEEcc
Confidence 33 3 67777765 48999999999997777 7999999999999999998754 44443
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.82 E-value=2.2e-08 Score=120.41 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=93.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhcccccc
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQ 674 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~ 674 (858)
..+|++|||+|+.++.+++.|.+ .|..+++++. ++++.+.+.+ .....+.||+++.++|+++|++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~--d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~-- 463 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLS---SGVKMTVLDH--DPDHIETLRK--------FGMKVFYGDATRMDLLESAGAA-- 463 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHh---CCCCEEEEEC--CHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCC--
Confidence 46899999999999999999975 4667999987 5566665442 2234589999999999999988
Q ss_pred ccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCC
Q 003003 675 NSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPS 747 (858)
Q Consensus 675 ~a~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~ 747 (858)
+| + .+|+++|+ |..|+.+...+|+++|+ .+|+++..+.++.+.++++|++
T Consensus 464 ~A---~-----~vvv~~~d----------~~~n~~i~~~ar~~~p~-----~~iiaRa~d~~~~~~L~~~Gad 513 (621)
T PRK03562 464 KA---E-----VLINAIDD----------PQTSLQLVELVKEHFPH-----LQIIARARDVDHYIRLRQAGVE 513 (621)
T ss_pred cC---C-----EEEEEeCC----------HHHHHHHHHHHHHhCCC-----CeEEEEECCHHHHHHHHHCCCC
Confidence 33 3 67777765 48999999999997776 6899999999999999988754
No 19
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.8e-07 Score=91.41 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=58.6
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCCCC
Q 003003 472 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 535 (858)
Q Consensus 472 ~Ei~i~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~~~ 535 (858)
.++++...++++|++++|+..+.+ +++||||.|+++++++|.|.++|++||.||++|+..+..+
T Consensus 88 ~~~~i~~~s~~~GksiGdl~irq~TGaTIIAI~r~~e~I~SPgPy~vle~gDtlvviG~~~~~~r 152 (162)
T COG0490 88 EWFKIEAGSPFIGKTIGDLNIRQNTGATVIAIVRNEEKILSPGPYTVLEAGDTLVVIGEETGLKR 152 (162)
T ss_pred eeeeeecCCcccCcchhhcccccccCcEEEEEEecCcEecCCCchhhhcCCCEEEEEecchHhHH
Confidence 478888899999999999998877 8999999999999999999999999999999998876544
No 20
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.4e-06 Score=88.31 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=109.1
Q ss_pred ccCCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 291 VLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 291 v~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
....+|+++||+++.+..+.+.|...+. .++++ +.+++..+.+... +. .++.||+++.
T Consensus 18 ~~l~~~~ii~g~~~~g~~~~~~l~~~~~-------------~~~vi-~~~~~~~~~~~~~------~~--~~~~gd~~~~ 75 (212)
T COG1226 18 VRLKRHVIIVGFGRVGQIVARALLASGI-------------PVVVI-DSDEDRVELLREL------GL--LVVLGDATRE 75 (212)
T ss_pred ccCCCCEEEEcCChHHHHHHHHHHHCCC-------------CEEEE-ECCHHHHHHHHHC------CC--cEEEecCCCH
Confidence 4569999999999999999999987543 45655 6666666655431 33 3457999999
Q ss_pred HHHHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcC-cccHHHHHhcCCCeEEehHHHHHHH
Q 003003 371 KSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSN-PNTCELLKSLSGLKVEPVENVASKL 449 (858)
Q Consensus 371 e~L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d-~~~~~~l~~ag~d~Vi~~~~i~~~l 449 (858)
+.|.++++.+|+++++...+ +..++..+..++..+ +..+++++..+ ..+.+.+...|++.++++....+..
T Consensus 76 ~~l~~a~~~~a~~vi~~~~~------~~~~~~~~~~~~~~~--p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~ 147 (212)
T COG1226 76 EVLEAAGIERARAVIVTLSD------DATNVFIVLLARAIN--PELEILARARDLDEAVETLTTVGADEVVPPTFESALL 147 (212)
T ss_pred HHHHhcChhheeEEEEecCC------HHHHHHHHHHHHHHC--CCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHH
Confidence 99999999999998886642 345555555566665 57789999999 6667889999999999998888888
Q ss_pred HHHHHcCCCHHHH
Q 003003 450 FVQCSRQKGLIKI 462 (858)
Q Consensus 450 laq~~~~Pgl~~v 462 (858)
++.....+.....
T Consensus 148 ~~~~~~~~~~~~~ 160 (212)
T COG1226 148 LARAALVGLGGDS 160 (212)
T ss_pred HHHHHhcccCCch
Confidence 8888776655443
No 21
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.34 E-value=1.3e-06 Score=76.72 Aligned_cols=69 Identities=20% Similarity=0.454 Sum_probs=50.4
Q ss_pred HHHHHhhheeeec-cCCCChhHHHHHhheeeeeccccccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 207 FVVFGGFLFFKFR-DETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (858)
Q Consensus 207 iv~ig~~l~~~~e-g~~~s~~da~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~ 277 (858)
++..|++.++..+ .+.+++.|++|++++++ +|+|||| .|+.||+++++.++.|+.+++.+++.+++.+.
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~--tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 6 VLAFGAIFFYISEGSEKWSFIDALYFSFVTI--TTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHTTSSSTTSHHHHHHHHHHHH--TT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHhcccCCHHHHHHHHHHHH--hcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444422 24789999999777665 6677777 66789999999999999999999999988775
No 22
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.12 E-value=7e-06 Score=92.87 Aligned_cols=90 Identities=16% Similarity=0.403 Sum_probs=66.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhheeeec-----cCCCChhHHHHHhheeeeeccccccc---CCchhHHHHHHHH
Q 003003 187 VQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR-----DETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILA 258 (858)
Q Consensus 187 ~~l~~n~~~~l~~ll~~~l~iv~ig~~l~~~~e-----g~~~s~~da~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~ 258 (858)
-++.+....+.++++++++.++++.++.|+ .| ....|..-++| |.++|++|+|||| .|..||+++..-+
T Consensus 336 ~Tlr~S~~ElglLllfL~~GI~iFStlvY~-~Ek~~~~~~FtSIPa~~W--WaiVTMTTVGYGDm~P~T~~Gklvas~ci 412 (477)
T KOG3713|consen 336 LTLRRSYRELGLLLLFLAVGIVIFSTLVYF-AEKDEPDTKFTSIPAGFW--WAVVTMTTVGYGDMVPVTVLGKLVASLCI 412 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCCCCccccchhh--eeeEEEeeecccCccccccchHHHHHHHH
Confidence 334445555555666666566666655554 43 23567889999 5677778889998 7889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003003 259 IWGILFYSRLLSTMTEQFRNN 279 (858)
Q Consensus 259 l~Gi~~fa~li~~it~~l~~~ 279 (858)
++||+++|+=|++|.+-+..-
T Consensus 413 l~GVLvlAlPItiIv~nF~~~ 433 (477)
T KOG3713|consen 413 LCGVLVLALPITIIVNNFSMY 433 (477)
T ss_pred HHhHHHhhcchHhHhhhHHHH
Confidence 999999999998888877643
No 23
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=97.94 E-value=8.7e-06 Score=69.57 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=45.6
Q ss_pred EEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCC
Q 003003 473 IFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 533 (858)
Q Consensus 473 Ei~i~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~ 533 (858)
|+.+.+.++++|++++|+..+.. ++.++||.|+|. .+.|+++++|++||.|++++..++.
T Consensus 3 e~~V~~~s~~~gk~l~el~l~~~~~~~i~~i~R~~~-~~~p~~~~~l~~gD~l~v~g~~~~i 63 (71)
T PF02080_consen 3 EVRVPENSPLVGKTLKELDLPERYGVRIVAIKRGGE-IIIPDGDTVLQAGDILIVVGDPEDI 63 (71)
T ss_dssp EEE--TTBTTTTEBHHHCTHHCHHTEEEEEEEETEE-EES--TT-BE-TTEEEEEEEEHHHH
T ss_pred EEEECCCCCCCCCCHHHCCCCccCCEEEEEEEECCE-EECCCCCCEECCCCEEEEEECHHHH
Confidence 67777888999999999665543 799999999855 6899999999999999999998644
No 24
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.88 E-value=0.00023 Score=80.28 Aligned_cols=232 Identities=16% Similarity=0.145 Sum_probs=152.9
Q ss_pred CCCCCCcEEEEeccccHHHHHHHHhcc----cCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHH
Q 003003 592 NLGPKERILLLGWRPDVVEMIEEYDNY----LGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLK 667 (858)
Q Consensus 592 ~~~~~~~vLI~Gw~~~~~~li~eL~~~----~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ 667 (858)
.++..+||++|----.+..+.+-|.++ .-....|++++....+...+. +-..++-|.+|++++|....++.|+
T Consensus 283 ~~~~e~hvvv~~ttl~~~~i~dfl~efyahp~~q~~~ivllsp~eld~~~rm---llkiplwnnrvhyv~gs~lrd~dl~ 359 (1087)
T KOG3193|consen 283 WNGVESHVVVTITTLEVEFIRDFLEEFYAHPENQRIQIVLLSPAELDNQTRM---LLKIPLWNNRVHYVRGSSLRDEDLE 359 (1087)
T ss_pred cccccceEEEEEeeeeHHHHHHHHHHHhcCcccccEEEEEechHHhcchhhh---heeccccccceeeecccccccchhh
Confidence 345678999997765544444444332 123467777774211111111 1123567889999999999999999
Q ss_pred hccccccccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCC
Q 003003 668 DTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPS 747 (858)
Q Consensus 668 ea~i~i~~a~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~ 747 (858)
+|+++.++ ++.||+-+. -.+...+|+.+|+..-.+|+..|+ .+--+.+-++++.-.++.+
T Consensus 360 ra~~~~s~----------acfilsar~--~~~k~a~dehtilrswaikdfapn-----v~qyvqifr~e~k~hi~~a--- 419 (1087)
T KOG3193|consen 360 RANVATSK----------ACFILSARH--VNRKVATDEHTILRSWAIKDFAPN-----VKQYVQIFRAETKMHIEHA--- 419 (1087)
T ss_pred hhhhcccc----------hheeeehhh--hccccccchhhHHHHHhhhhcCCc-----hHHHhhhhchhhhhhhhhh---
Confidence 99888333 577887542 356788999999999999998776 3334456666665444432
Q ss_pred cceeehhhHHHHHHHHHhhcccHHHHHHHH-------------------Hcc-CCCeEEEEec--cccccCCCCCCHHHH
Q 003003 748 LTYIAAEEIMSLVTAQVVENNELNEVWKDI-------------------LNA-EGDEIYVKDI--SLYMKEGENPSFFEL 805 (858)
Q Consensus 748 ~d~I~S~~iis~vlAq~a~~~~l~~v~~~L-------------------l~~-eG~ei~~~~~--~~~~~~~~~~sF~~L 805 (858)
..+|.-+|+-=.++|.-..-|++..+...| .+. .|+|+|-... +.+..+.+++||.-.
T Consensus 420 e~~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~ey~gksfs~~ 499 (1087)
T KOG3193|consen 420 EVLICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCEYVGKSFSST 499 (1087)
T ss_pred eeEEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeeeecccccchh
Confidence 145666666666666666666666655544 342 4777876443 445566678888766
Q ss_pred HHHH-HhcCcEEEEEEECC---eEEeCCCCCCCCccccCCCEEEEEec
Q 003003 806 SERA-HLRREVAIGYVKDN---KKVINPVPKSEPLSLTLTDSLIVISE 849 (858)
Q Consensus 806 ~~~a-~~~g~ilIG~~~~~---~~iiNP~~k~~~~~l~~gD~LIVI~~ 849 (858)
..-+ ++.|--+||+..++ ...+||.+. ..+++.|.+.-.+-
T Consensus 500 sfhahk~ygi~li~v~p~~~~~~~~lnpg~~---hi~~~~dt~yym~l 544 (1087)
T KOG3193|consen 500 SFHAHKEYGIGLIAVSPDGDTSRMKLNPGSS---HIIQPTDTVYYMGL 544 (1087)
T ss_pred hhhhhhhcCeEEEEEcCCCCcceeecCCCcc---cccCCCCeEEEEec
Confidence 6555 47898999998764 578999643 48999999877654
No 25
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.81 E-value=3.2e-05 Score=96.70 Aligned_cols=48 Identities=8% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHhheeeeeccccccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 228 CLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (858)
Q Consensus 228 a~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~ 277 (858)
|+||+++++ +|+|||| .|..+|+|+++++++|+++|++++|.+++.+.
T Consensus 254 slYwai~Tm--tTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~ 304 (823)
T PLN03192 254 AIYWSITTM--TTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVV 304 (823)
T ss_pred HHHHHHHHH--hhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699776555 6778888 45789999999999999999999998888764
No 26
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.67 E-value=7.8e-05 Score=84.83 Aligned_cols=60 Identities=18% Similarity=0.428 Sum_probs=49.9
Q ss_pred CCChhHHHHHhheeeeeccccccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 222 TQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKL 283 (858)
Q Consensus 222 ~~s~~da~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~~~~~~l 283 (858)
..++.||+| |.++|.+|+|||| .|+.||+++..+.+.|+.+|+.--|++.+.|.-++++-
T Consensus 267 F~TyADALW--WG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq 329 (654)
T KOG1419|consen 267 FPTYADALW--WGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQ 329 (654)
T ss_pred chhHHHHHH--hhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHH
Confidence 357899999 5566667789998 56789999999999999999988888888887666653
No 27
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.64 E-value=7.5e-05 Score=84.56 Aligned_cols=230 Identities=14% Similarity=0.143 Sum_probs=153.5
Q ss_pred CCCCcEEEEeccc--cHHHHHHHHhcccCC--CceEEEEcCC-CchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHh
Q 003003 594 GPKERILLLGWRP--DVVEMIEEYDNYLGP--GSVLEILSDV-PLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKD 668 (858)
Q Consensus 594 ~~~~~vLI~Gw~~--~~~~li~eL~~~~~~--gs~I~Ii~~~-p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~e 668 (858)
..++||++||-=. .....++.+.+.... ..+|+.+-.. |+-|.+..++ ..-.+|.|.+|..++...|.+
T Consensus 355 hgkkhivvcghityesvshflkdflhedrddvdvevvflhr~~pdleleglfk------rhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 355 HGKKHIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEGLFK------RHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred cCCeeEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHHHHh------hheeeEEEecccccChhhhhh
Confidence 4689999998631 222333443322222 3455555543 5545554433 234678899999999999999
Q ss_pred ccccccccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhc----
Q 003003 669 TIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARN---- 744 (858)
Q Consensus 669 a~i~i~~a~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~---- 744 (858)
..|+ + +| +++||++.- -.+|...|+.||+.+..+|++.++ +++|..++.-.|...+-.+
T Consensus 429 vki~--~---ad-----aclvlanky--c~dpdaedaanimrvisiknys~d-----irvi~qlmqyhnkayllnipswd 491 (1103)
T KOG1420|consen 429 VKIE--S---AD-----ACLVLANKY--CADPDAEDAANIMRVISIKNYSPD-----IRVITQLMQYHNKAYLLNIPSWD 491 (1103)
T ss_pred eecc--c---cc-----eeeeecccc--cCCCChhhhhhheEEEEeccCCCc-----hhHHHHHHHhhchheeecCCCcc
Confidence 9777 3 34 899998642 257888999999999999998777 6777766655554333211
Q ss_pred -CCCcceeehhhHHHHHHHHHhhcccHHHHHHHHHc-------------------cCCCeEEEEeccccccCCCCCCHHH
Q 003003 745 -KPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILN-------------------AEGDEIYVKDISLYMKEGENPSFFE 804 (858)
Q Consensus 745 -g~~~d~I~S~~iis~vlAq~a~~~~l~~v~~~Ll~-------------------~eG~ei~~~~~~~~~~~~~~~sF~~ 804 (858)
..++|+|.-.|+--..+||...-|++......|+. .-|.|+|-...+. ...+++|.+
T Consensus 492 wk~gddviclaelklgfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~lsp---~f~g~sfp~ 568 (1103)
T KOG1420|consen 492 WKEGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYLSP---AFVGLSFPT 568 (1103)
T ss_pred cccCCceEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhcCH---hhcCCchHH
Confidence 22568999888888888999999997777766654 1244555443332 236899999
Q ss_pred HHHHHH-hcCcEEEEEEEC------CeEEeCCCCCCCCccccCCCEEEEEecCCC
Q 003003 805 LSERAH-LRREVAIGYVKD------NKKVINPVPKSEPLSLTLTDSLIVISELEG 852 (858)
Q Consensus 805 L~~~a~-~~g~ilIG~~~~------~~~iiNP~~k~~~~~l~~gD~LIVI~~~~~ 852 (858)
..+... +-+-.++++... ....|||. + ..++++|..=..|+.+..
T Consensus 569 a~elcf~klkllllaie~k~een~es~i~inpg-~--h~kiq~~tqgffiaqsad 620 (1103)
T KOG1420|consen 569 ACELCFVKLKLLLLAIEYKDEENRESRILINPG-N--HLKIQEGTQGFFIAQSAD 620 (1103)
T ss_pred HHHHHHHHHHHhheeeeeccccCccceeEeCCC-C--CceeccCCceEEEecchH
Confidence 988873 456566665332 35799995 3 358999998777776543
No 28
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00065 Score=68.70 Aligned_cols=137 Identities=13% Similarity=0.183 Sum_probs=97.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhccccc
Q 003003 594 GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNI 673 (858)
Q Consensus 594 ~~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i 673 (858)
....|+++||||+.+..+...|... +..+.+++.. .++.+.+ ....+..+.||+++.++|.+++++
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~~~---~~~~~vi~~~--~~~~~~~--------~~~~~~~~~gd~~~~~~l~~a~~~- 84 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALLAS---GIPVVVIDSD--EDRVELL--------RELGLLVVLGDATREEVLEAAGIE- 84 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHHC---CCCEEEEECC--HHHHHHH--------HHCCCcEEEecCCCHHHHHhcChh-
Confidence 3679999999999999999999754 3357777752 2333322 223335689999999999999888
Q ss_pred cccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEc-cchhhHhhhcCCCcceee
Q 003003 674 QNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVD-SKLGKQIARNKPSLTYIA 752 (858)
Q Consensus 674 ~~a~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~-~~~~~~l~~~g~~~d~I~ 752 (858)
++ . .+++..++ +..++.....++.++|. ..+++...+ ..+...+...|.+ +++.
T Consensus 85 -~a---~-----~vi~~~~~----------~~~~~~~~~~~~~~~p~-----~~i~~~~~~~~~~~~~l~~~G~~-~vi~ 139 (212)
T COG1226 85 -RA---R-----AVIVTLSD----------DATNVFIVLLARAINPE-----LEILARARDLDEAVETLTTVGAD-EVVP 139 (212)
T ss_pred -he---e-----EEEEecCC----------HHHHHHHHHHHHHHCCC-----CEEEEEeccchHHHHHHHHcCCC-eeec
Confidence 32 1 45555443 46888888888887777 679999988 6666778888755 6666
Q ss_pred hhhHHHHHHHHHhhccc
Q 003003 753 AEEIMSLVTAQVVENNE 769 (858)
Q Consensus 753 S~~iis~vlAq~a~~~~ 769 (858)
.....+..++..+..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (212)
T COG1226 140 PTFESALLLARAALVGL 156 (212)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 66666666666555444
No 29
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00032 Score=75.54 Aligned_cols=77 Identities=14% Similarity=0.342 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeccCCCChhHHHHHhheeeeeccccccc----C-------CchhHHHHHHHHHHHHHH
Q 003003 196 FLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQ----R-------TRVERVIGFILAIWGILF 264 (858)
Q Consensus 196 ~l~~ll~~~l~iv~ig~~l~~~~eg~~~s~~da~w~a~~~vt~sg~g~gd----~-------T~~gRl~svvl~l~Gi~~ 264 (858)
++..+...|++++..|+..|...| +||++||+|+-| +|.+|.|+|| + .+.-+.++++.++.|+.+
T Consensus 160 l~~i~~~~~~~~i~~gaa~fs~~E--~Wsyfds~YyCF--ITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~v 235 (350)
T KOG4404|consen 160 LVLILFTACILLICCGAAMFSSVE--GWSYFDSYYYCF--ITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCV 235 (350)
T ss_pred HHHHHHHHHHHHHHhhHHHhhccc--Ccchhhhhheee--eeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHH
Confidence 356677788888999999999996 699999999555 5556778888 1 256899999999999998
Q ss_pred HHHHHHHHHHHH
Q 003003 265 YSRLLSTMTEQF 276 (858)
Q Consensus 265 fa~li~~it~~l 276 (858)
++.++-+++=.+
T Consensus 236 i~a~~NllvLrf 247 (350)
T KOG4404|consen 236 IYALLNLLVLRF 247 (350)
T ss_pred HHHHHHHHHHHH
Confidence 877666554433
No 30
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=97.51 E-value=0.00023 Score=65.74 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=55.8
Q ss_pred hcCCCeEEehHHHHHHHHHHHHcCCCHHHHHHHHhcc--------------------cCcEEEEecCC-CCCCCCHHHHH
Q 003003 433 SLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNY--------------------RKNIFNLWSFP-NLAGIKYRQLR 491 (858)
Q Consensus 433 ~ag~d~Vi~~~~i~~~llaq~~~~Pgl~~v~~~Ll~~--------------------~g~Ei~i~~~p-~l~G~tf~el~ 491 (858)
..++|+||+.+++.-.+||+++..||+++++.+|+.. .++|+|....| .++|++|.++.
T Consensus 7 ~~~~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f~G~~F~~~~ 86 (101)
T PF03493_consen 7 WKFADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAFVGMTFTEAA 86 (101)
T ss_dssp TTTT-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGGTTSBHHHHH
T ss_pred cccCceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhhCCCcHHHHH
Confidence 3456899999999999999999999999999998853 13789988876 79999999987
Q ss_pred cc-CC--ceEEEEEE
Q 003003 492 RG-FQ--EAVVCGLY 503 (858)
Q Consensus 492 ~~-~~--~aivIGI~ 503 (858)
.. ++ +++++||+
T Consensus 87 ~~~~~~~~viLigIe 101 (101)
T PF03493_consen 87 RLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHS--EEEEEE
T ss_pred HHHHHHcCcEEEEeC
Confidence 64 33 79999985
No 31
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=97.49 E-value=5e-05 Score=82.20 Aligned_cols=55 Identities=22% Similarity=0.447 Sum_probs=44.5
Q ss_pred CCCChhHHHHHhheeeeeccccccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 221 ETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (858)
Q Consensus 221 ~~~s~~da~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~ 277 (858)
...|..|||| |.++|++|+|||| .|..|++++-+-.++|++.+|.=+++|++-+.
T Consensus 390 ~F~SIPdaFW--wavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 390 HFSSIPDAFW--WAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred CCCcCcccce--EEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccc
Confidence 3468889999 5566677788888 78899999999999999988877777665544
No 32
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00024 Score=70.85 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=52.8
Q ss_pred EEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCC
Q 003003 473 IFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 533 (858)
Q Consensus 473 Ei~i~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~ 533 (858)
.+.+.+.|.++|+|++|+.+.-. ++-||+|+|++.-+++|+.|+.|++||.|++-|++.+.
T Consensus 122 rv~v~~~S~l~gktLg~l~L~t~tGvrVIAIRRG~~wi~~Pd~~~~Ir~gDvLIarG~~~g~ 183 (204)
T COG3273 122 RVRVEKGSELAGKTLGELDLATNTGVRVIAIRRGERWIYGPDEDTKIREGDVLIARGTDAGV 183 (204)
T ss_pred EEEecCCCeecccchhhhccccccceEEEEEecCCccccCCCccceeccCCEEEEecchhhH
Confidence 45566788999999999988755 89999999988878999999999999999998887544
No 33
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0099 Score=64.89 Aligned_cols=203 Identities=15% Similarity=0.060 Sum_probs=115.4
Q ss_pred CeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 295 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 295 ~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
+.|+|+|-|..+..+++-++.... ++. -.+|+ ..+.+..+.- .+ ...+-+..=||++.+.|+
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~----~~~-----f~~vv--~~~qe~~~~~--~~-----~e~~~fh~fdaTs~~rl~ 63 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYS----NHN-----FYIVV--VKNQESLIPK--NY-----PETFAFHCFDATSSFRLL 63 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhc----Cce-----EEEEE--eechhhcccc--cC-----cceEEEEEeCCccHHHHH
Confidence 468999999999999999887543 121 13333 3443322221 11 123444567899998887
Q ss_pred hc-CccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcE-EEEEcC--cccHHHHHhcCCCeEEehHHHHHHHH
Q 003003 375 RA-AANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPT-IVEVSN--PNTCELLKSLSGLKVEPVENVASKLF 450 (858)
Q Consensus 375 rA-~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~i-Iaev~d--~~~~~~l~~ag~d~Vi~~~~i~~~ll 450 (858)
.. +-+-.+|+|+.-+ . -++..+.=++|...+ +..+ |.-..+ ++|.+ .+..-.+ .+...+++++..
T Consensus 64 ~~~n~~~~~Afi~~qd-----~--~et~~i~k~lr~~f~--n~e~ei~~~~~~l~~Nee-~~d~k~~-lid~~~vL~~~F 132 (471)
T COG3400 64 QVLNDEVSDAFIIIQD-----F--KETRIIHKILRTHFK--NMEVEISVKRDELENNEE-NKDEKLI-LIDEFEVLANKF 132 (471)
T ss_pred HHhhhHhhhhheehhh-----H--HHHHHHHHHHHHhcc--CcEEEEEEEeCCCccchh-hccccee-ecchHHHHHHHH
Confidence 64 5555666665443 1 233333444554442 3333 333333 33433 2222111 222234444443
Q ss_pred HHHHcCCCHHHHHHHHhcccC---cEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEE
Q 003003 451 VQCSRQKGLIKIYRHLLNYRK---NIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFI 527 (858)
Q Consensus 451 aq~~~~Pgl~~v~~~Ll~~~g---~Ei~i~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~~L~~GD~LivI 527 (858)
-... |++...=.. .+.+. .|+.+...+.++=+.++++.. +...+++++|+|++ +-|.++.+|+|||+++|+
T Consensus 133 ~~~L--p~I~~tp~~-iGLgkGEImEI~vp~gSifaYrhi~sI~q--k~~RIvl~YRN~kl-ll~~~slvlqp~D~lLVv 206 (471)
T COG3400 133 ISRL--PNIPSTPRE-IGLGKGEIMEIDVPFGSIFAYRHIGSIRQ--KEYRIVLLYRNDKL-LLSTKSLVLQPRDILLVV 206 (471)
T ss_pred HHhc--CCccccchh-cccccceEEEEecCCCchhhhhhhhhhhh--heeEEEEEEECCEE-EEeccceEecCCCEEEEe
Confidence 3332 444322111 12222 466666677888888888765 35789999999996 569999999999999999
Q ss_pred eecCC
Q 003003 528 APIHG 532 (858)
Q Consensus 528 a~~~~ 532 (858)
|.+..
T Consensus 207 G~P~~ 211 (471)
T COG3400 207 GNPEI 211 (471)
T ss_pred CChHH
Confidence 98753
No 34
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0022 Score=63.26 Aligned_cols=63 Identities=24% Similarity=0.322 Sum_probs=49.6
Q ss_pred eEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEEEEecCCCCc
Q 003003 784 EIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEGEQ 854 (858)
Q Consensus 784 ei~~~~~~~~~~~~~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LIVI~~~~~~~ 854 (858)
++++...+.+ .+.+-+++..+ +++|.++||+.++++++++|.|- .++++||.|||+++....+
T Consensus 89 ~~~i~~~s~~----~GksiGdl~ir-q~TGaTIIAI~r~~e~I~SPgPy---~vle~gDtlvviG~~~~~~ 151 (162)
T COG0490 89 WFKIEAGSPF----IGKTIGDLNIR-QNTGATVIAIVRNEEKILSPGPY---TVLEAGDTLVVIGEETGLK 151 (162)
T ss_pred eeeeecCCcc----cCcchhhcccc-cccCcEEEEEEecCcEecCCCch---hhhcCCCEEEEEecchHhH
Confidence 5666666654 35666677655 38999999999999999999653 4999999999999876654
No 35
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.45 E-value=0.012 Score=71.44 Aligned_cols=52 Identities=17% Similarity=0.357 Sum_probs=42.7
Q ss_pred hhHHHHHhheeeeecccccccC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 225 LEDCLWEAWACLISSSTHLKQR---TRVERVIGFILAIWGILFYSRLLSTMTEQFRN 278 (858)
Q Consensus 225 ~~da~w~a~~~vt~sg~g~gd~---T~~gRl~svvl~l~Gi~~fa~li~~it~~l~~ 278 (858)
+..|+||+++++ +|+|||+. +....+|+++++++|+++||.+||-++..+.+
T Consensus 295 Y~~aLyw~l~tL--stvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 295 YVYALYWGLSTL--STVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHHHHhhHh--hhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 467999777665 66788873 46789999999999999999999988877653
No 36
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.26 E-value=0.0097 Score=66.52 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=49.6
Q ss_pred CChhHHHHHhheeeeecccccc---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccCCCeE
Q 003003 223 QSLEDCLWEAWACLISSSTHLK---QRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGA--QMQVLESDHI 297 (858)
Q Consensus 223 ~s~~da~w~a~~~vt~sg~g~g---d~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~~~~~~lr~G~--~~~v~~~~HI 297 (858)
.+|.+|||++..+.|+.|||.- +..+.+-++..+-.+.|+++.++++|++...+.+ ++ ...+..++|.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr-------P~~R~~tI~FS~~A 155 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR-------PKKRASTILFSKKA 155 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------CCCGGGSEEE-SSE
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cccccceEEEEeee
Confidence 6899999999888865555432 2335677778888899999999999877664432 22 1235678888
Q ss_pred EEEcc
Q 003003 298 IVCGV 302 (858)
Q Consensus 298 II~G~ 302 (858)
||+-.
T Consensus 156 VI~~~ 160 (336)
T PF01007_consen 156 VIAPR 160 (336)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 88755
No 37
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.0018 Score=70.88 Aligned_cols=94 Identities=15% Similarity=0.329 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHhhheeeec----cCCCChhHHHHHhheeeeeccccccc---CCc
Q 003003 177 NLARLLYLFNVQLERNVATFLVVLAV-VCFSFVVFGGFLFFKFR----DETQSLEDCLWEAWACLISSSTHLKQ---RTR 248 (858)
Q Consensus 177 ~~~rl~y~f~~~l~~n~~~~l~~ll~-~~l~iv~ig~~l~~~~e----g~~~s~~da~w~a~~~vt~sg~g~gd---~T~ 248 (858)
.+.-|.|-+..--+.-+ +|++ ++.+++++.++.||.-- ....|...||| ++++|++|.|||| .|-
T Consensus 309 GLRILGYTLKSCASELG-----FLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFW--YTIVTmTTLGYGDMVp~TI 381 (632)
T KOG4390|consen 309 GLRILGYTLKSCASELG-----FLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFW--YTIVTMTTLGYGDMVPSTI 381 (632)
T ss_pred ccchhhhhHHHHHHHHh-----HHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHh--hheeeeeeccccccchHHH
Confidence 34556776655443222 2322 22334444445554321 23467889999 5567777789998 677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 249 VERVIGFILAIWGILFYSRLLSTMTEQFR 277 (858)
Q Consensus 249 ~gRl~svvl~l~Gi~~fa~li~~it~~l~ 277 (858)
.|++|+-+-.++|+++++.=+++|++-+.
T Consensus 382 aGKIfGsiCSLSGVLVIALPVPvIVSNFS 410 (632)
T KOG4390|consen 382 AGKIFGSICSLSGVLVIALPVPVIVSNFS 410 (632)
T ss_pred HHHHhhhhhcccceEEEeccccEEEechh
Confidence 89999999999999988877776665554
No 38
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.57 E-value=0.017 Score=69.16 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=52.8
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCCC
Q 003003 472 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKK 534 (858)
Q Consensus 472 ~Ei~i~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~~ 534 (858)
..+.+.+.++++|+|+.|+..+.+ ++.+++++|+|+. ++|.+|++|++||.+++.++.++..
T Consensus 220 r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R~g~~-~~p~~dtvL~~GD~L~V~G~~e~L~ 282 (562)
T TIGR03802 220 RAYRVNRASSLIGKTVGDLENLFAGRVTIERIRRDGKL-LTVSPDLVLNAGDVVLVVGRRDAVV 282 (562)
T ss_pred EEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEECCEE-EcCCCCCeeCCCCEEEEEECHHHHH
Confidence 356666667899999999998766 7999999999986 4799999999999999999987653
No 39
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.28 E-value=0.025 Score=67.89 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=50.2
Q ss_pred cEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCC
Q 003003 472 NIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 533 (858)
Q Consensus 472 ~Ei~i~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~ 533 (858)
.++.+.+.++++|++++|+... +++.++++.|+|+. +.|+++++|++||++++++++++.
T Consensus 417 ~~~~V~~~s~~~G~~l~el~lp-~~~~i~~v~R~g~~-~~p~~~t~L~~GD~l~l~~~~~~l 476 (562)
T PRK05326 417 LEYRVPAGSWLVGKALRDLRLP-RGALIALIIRDGKL-LVPTGSTRLKAGDVLLVLGPERDL 476 (562)
T ss_pred EEEEECCCCcccCCCHHHcCCC-CCcEEEEEEECCEE-eCCCCCCeECCCCEEEEEECHHHH
Confidence 3455556678999999999542 37999999999995 799999999999999999988654
No 40
>PRK03818 putative transporter; Validated
Probab=95.08 E-value=0.025 Score=67.63 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=53.1
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCCCC
Q 003003 472 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 535 (858)
Q Consensus 472 ~Ei~i~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~~~ 535 (858)
.|..+.+.|+++|+|++|+.++.+ ++.+.+|+|+|+ .+.|.+|++|+.||+|.+.++.++..+
T Consensus 291 ~E~Vvv~~S~liGkTL~eL~~r~~~Gv~VlaI~R~g~-~l~~~~d~~Lq~GD~LlVvG~~~~i~~ 354 (552)
T PRK03818 291 SERVVVTNEKVLGKKLRDLHLKNKYGVVISRLNRAGV-ELVASPDLSLQFGDILNLVGRPEAIDA 354 (552)
T ss_pred EEEEEEcChhccCCcHHHhcccccCCeEEEEEeECCe-ecCCCCCCEEecCCEEEEEECHHHHHH
Confidence 356667788999999999988755 799999999887 356888999999999999999876544
No 41
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=0.52 Score=51.98 Aligned_cols=208 Identities=11% Similarity=0.053 Sum_probs=110.8
Q ss_pred CcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhcccccccc
Q 003003 597 ERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNS 676 (858)
Q Consensus 597 ~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~~a 676 (858)
++|+|+|-|..+...++.+..-.+-+.-.+++.. +.|.. . ..-.-..+.++.=|||+-.+|++. ++ +.
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~~~~f~~vv~~--~qe~~---~----~~~~~e~~~fh~fdaTs~~rl~~~-~n--~~ 69 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYSNHNFYIVVVK--NQESL---I----PKNYPETFAFHCFDATSSFRLLQV-LN--DE 69 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhcCceEEEEEee--chhhc---c----cccCcceEEEEEeCCccHHHHHHH-hh--hH
Confidence 5789999999999999888754344444444443 22221 1 122234577788999999999875 22 11
Q ss_pred ccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEE-ccchhhHhhhcCCCcceeehhh
Q 003003 677 FKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIV-DSKLGKQIARNKPSLTYIAAEE 755 (858)
Q Consensus 677 ~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~-~~~~~~~l~~~g~~~d~I~S~~ 755 (858)
..+ ++|+.-|. .++..+.-.+|...++... .|+.... .++|.+ .+...+ +.+-..+
T Consensus 70 -~~~-----Afi~~qd~-----------~et~~i~k~lr~~f~n~e~---ei~~~~~~l~~Nee-~~d~k~--~lid~~~ 126 (471)
T COG3400 70 -VSD-----AFIIIQDF-----------KETRIIHKILRTHFKNMEV---EISVKRDELENNEE-NKDEKL--ILIDEFE 126 (471)
T ss_pred -hhh-----hheehhhH-----------HHHHHHHHHHHHhccCcEE---EEEEEeCCCccchh-hcccce--eecchHH
Confidence 112 67777664 3666666677776665432 3443333 344422 222111 2222222
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHccCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCC
Q 003003 756 IMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEP 835 (858)
Q Consensus 756 iis~vlAq~a~~~~l~~v~~~Ll~~eG~ei~~~~~~~~~~~~~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~ 835 (858)
..+...-... |++..-= .=.+-+--||.-.+.+.+ ....|.-+... +++..-+++++|.+...+.- + .
T Consensus 127 vL~~~F~~~L--p~I~~tp-~~iGLgkGEImEI~vp~g----SifaYrhi~sI-~qk~~RIvl~YRN~klll~~--~--s 194 (471)
T COG3400 127 VLANKFISRL--PNIPSTP-REIGLGKGEIMEIDVPFG----SIFAYRHIGSI-RQKEYRIVLLYRNDKLLLST--K--S 194 (471)
T ss_pred HHHHHHHHhc--CCccccc-hhcccccceEEEEecCCC----chhhhhhhhhh-hhheeEEEEEEECCEEEEec--c--c
Confidence 2222221111 1111100 111212125555555532 33444444443 36677777887776665533 2 4
Q ss_pred ccccCCCEEEEEecCC
Q 003003 836 LSLTLTDSLIVISELE 851 (858)
Q Consensus 836 ~~l~~gD~LIVI~~~~ 851 (858)
+++++||.|.|+|+++
T Consensus 195 lvlqp~D~lLVvG~P~ 210 (471)
T COG3400 195 LVLQPRDILLVVGNPE 210 (471)
T ss_pred eEecCCCEEEEeCChH
Confidence 7999999999999865
No 42
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.56 E-value=0.043 Score=65.84 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=52.2
Q ss_pred cEEEEecCCCCCCCCHHHHHcc-----CCceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCCCC
Q 003003 472 NIFNLWSFPNLAGIKYRQLRRG-----FQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 535 (858)
Q Consensus 472 ~Ei~i~~~p~l~G~tf~el~~~-----~~~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~~~ 535 (858)
.|..+.+.++++|||++|+..+ ..++.+.+|+|+|+. +.|.+|++|+.||+|.+.++.++..+
T Consensus 304 ~e~VV~~~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R~g~~-i~~~~d~~L~~GD~LlV~G~~~~l~~ 371 (562)
T TIGR03802 304 TKDVVLTNKEYNGKTVAEILKNAQQFMRHGVYVEKIKRDDQP-LPILPETVLQRGDVVTLVGTPQDVDR 371 (562)
T ss_pred EEEEEECCcccCCccHHHHhccccccccCCeEEEEEeeCCcc-ccCCCCCEecCCCEEEEEeCHHHHHH
Confidence 4555667889999999999865 237999999998874 57899999999999999999876543
No 43
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.069 Score=60.86 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=50.3
Q ss_pred CCCChhHHHHHhheeeeeccccc-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 221 ETQSLEDCLWEAWACLISSSTHL-KQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKL 283 (858)
Q Consensus 221 ~~~s~~da~w~a~~~vt~sg~g~-gd~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~~~~~~l 283 (858)
..++|.+|+|++++++|+-|||. .+.|.+||+++++-.++||-++.+.++-+...+...+.++
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred cceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999998887654432 2477899999999999999988888887777777666554
No 44
>PRK03818 putative transporter; Validated
Probab=94.51 E-value=0.066 Score=64.04 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=52.0
Q ss_pred cEEEEecCCCCCCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCC
Q 003003 472 NIFNLWSFPNLAGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 533 (858)
Q Consensus 472 ~Ei~i~~~p~l~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~ 533 (858)
.++.+. .++++|||+.|+..+.+ +..+.+++|+|+ ...|.+|++|++||.|++.+..++.
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R~g~-~~~p~~~~~L~~GDiLlV~G~~e~l 267 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKRGDT-LMVPSPDTIIQLGDLLHLVGQPEDL 267 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEECCE-EECCCCCCccCCCCEEEEEECHHHH
Confidence 467776 77899999999988766 799999999887 4689999999999999999998765
No 45
>PRK04972 putative transporter; Provisional
Probab=94.44 E-value=0.041 Score=65.85 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=51.8
Q ss_pred cEEEEecCCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCCCC
Q 003003 472 NIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 535 (858)
Q Consensus 472 ~Ei~i~~~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~~~ 535 (858)
.|..+.+.++++|+|++|+..+..++.+++|+|+|. .+.|.+|++|+.||.|.+.++.++..+
T Consensus 304 ~E~vVv~~s~liGkTL~eL~~r~~gv~Vl~I~R~g~-~~~~~~~~~L~~GD~LlVvG~~~~i~~ 366 (558)
T PRK04972 304 TEEIVVKNHNAVGKRLSQLKLTDHGCFLNRVIRSQI-EMPIDDNVVLNKGDVLQVSGDARRVKT 366 (558)
T ss_pred EEEEEEcCcccCCCCHHHhCCccCCeEEEEEecCCc-ccCCCCCCEecCCCEEEEEECHHHHHH
Confidence 366677788999999999987634799999999654 356888999999999999999876543
No 46
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=93.65 E-value=0.11 Score=56.68 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=33.2
Q ss_pred cCCCChhHHHHHhheeeeecccccc---cCCchhHHHHHHHHHHHHHH
Q 003003 220 DETQSLEDCLWEAWACLISSSTHLK---QRTRVERVIGFILAIWGILF 264 (858)
Q Consensus 220 g~~~s~~da~w~a~~~vt~sg~g~g---d~T~~gRl~svvl~l~Gi~~ 264 (858)
|+.|.|.-|||++-+++|+ .||| |.|.+||+|.++-.+.|+-.
T Consensus 76 g~qWkF~GaFYFa~TVItT--IGyGhstP~T~~GK~Fcm~Yal~Gipl 121 (350)
T KOG4404|consen 76 GPQWKFAGAFYFATTVITT--IGYGHSTPSTDGGKAFCMFYALVGIPL 121 (350)
T ss_pred ccccccCcceEEEEEEEee--eccCCCCCCCcCceehhhhHHHhcCch
Confidence 5678899999976655544 5555 57789999999999998843
No 47
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=93.58 E-value=0.09 Score=44.61 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=35.6
Q ss_pred eEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEEEEecCC
Q 003003 784 EIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELE 851 (858)
Q Consensus 784 ei~~~~~~~~~~~~~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LIVI~~~~ 851 (858)
|+.+.+.+.+. +.+-.++.-. ...+..++|++++ +..+.|.+ +.++++||.|++++..+
T Consensus 3 e~~V~~~s~~~----gk~l~el~l~-~~~~~~i~~i~R~-~~~~~p~~---~~~l~~gD~l~v~g~~~ 61 (71)
T PF02080_consen 3 EVRVPENSPLV----GKTLKELDLP-ERYGVRIVAIKRG-GEIIIPDG---DTVLQAGDILIVVGDPE 61 (71)
T ss_dssp EEE--TTBTTT----TEBHHHCTHH-CHHTEEEEEEEET-EEEES--T---T-BE-TTEEEEEEEEHH
T ss_pred EEEECCCCCCC----CCCHHHCCCC-ccCCEEEEEEEEC-CEEECCCC---CCEECCCCEEEEEECHH
Confidence 44455555442 3444443222 1349999999877 88888865 35999999999999764
No 48
>PRK04972 putative transporter; Provisional
Probab=92.98 E-value=0.19 Score=60.22 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=44.6
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCC
Q 003003 483 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 533 (858)
Q Consensus 483 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~ 533 (858)
.||+++|+..+.. ++.+.++.|+|+. ..|.+|++|++||.|++.++.++.
T Consensus 229 ~Gktl~el~~~~~~~v~I~~I~R~g~~-~~p~~dt~L~~GDiL~V~G~~e~l 279 (558)
T PRK04972 229 DGKNLRELGIYRQTGCYIERIRRNGIL-ANPDGDAVLQMGDEIALVGYPDAH 279 (558)
T ss_pred CCCCHHHHHhhcCCCEEEEEEEECCEE-ecCCCCCEeCCCCEEEEEECHHHH
Confidence 7999999988766 7899999999884 789999999999999999998754
No 49
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.97 E-value=0.22 Score=58.04 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=46.6
Q ss_pred ccCCCChhHHHHHhheeeeecccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 219 RDETQSLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 278 (858)
Q Consensus 219 eg~~~s~~da~w~a~~~vt~sg~g~gd~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~~ 278 (858)
.|.++++.-|+||+..++++.|..-.+.|...-+|..+-.+.|+++||.|||-|-+.+.+
T Consensus 398 dg~Gn~YiRCyyfa~kt~~tiG~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 398 DGEGNEYIRCYYFAVKTLITIGGLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred cCCCCceeeehhhHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477899999999887776555443344666677888888899999999999988776654
No 50
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.68 E-value=0.36 Score=48.19 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=45.8
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...+|+|+|.|+.+...++.|.+++. .|+|+++.-.+++.++ ....+ ..+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-------------~V~VIsp~~~~~l~~l--------~~i~~--------~~~~ 62 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-------------FVTVVSPEICKEMKEL--------PYITW--------KQKT 62 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-------------EEEEEcCccCHHHHhc--------cCcEE--------Eecc
Confidence 47789999999999999999998765 5777754322233221 11211 2567
Q ss_pred HHhcCccccCeEEEecCCC
Q 003003 373 YERAAANKARAIIILPTKG 391 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~ 391 (858)
|+.++++.|+.|++ ++++
T Consensus 63 ~~~~dl~~a~lVia-aT~d 80 (157)
T PRK06719 63 FSNDDIKDAHLIYA-ATNQ 80 (157)
T ss_pred cChhcCCCceEEEE-CCCC
Confidence 77788999996544 5543
No 51
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=92.62 E-value=0.54 Score=54.70 Aligned_cols=51 Identities=20% Similarity=0.461 Sum_probs=40.6
Q ss_pred hhHHHHHhheeeeeccccccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 225 LEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (858)
Q Consensus 225 ~~da~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~ 277 (858)
+..++|++.+++ +|+|+|. .|+..++|++.+++.|-+++|++.|-++..+.
T Consensus 424 YissLYfTMt~m--ttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~Q 477 (971)
T KOG0501|consen 424 YISSLYFTMTCM--TTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQ 477 (971)
T ss_pred ehhhhhhhhhhh--hcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 478999666665 4556664 77899999999999999999999997666554
No 52
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.43 E-value=0.6 Score=46.64 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=28.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCC
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 631 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~ 631 (858)
..++|+|+|+|+.+...++.|.+ .|..|++++..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~---~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD---TGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCc
Confidence 35899999999999999999964 47789999753
No 53
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=90.74 E-value=0.42 Score=54.43 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhheeeecc------CCCChhHHHHHhheeeeeccccccc---CCchhHHHHHHHHHHHHHHHHHHH
Q 003003 199 VLAVVCFSFVVFGGFLFFKFRD------ETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIGFILAIWGILFYSRLL 269 (858)
Q Consensus 199 ~ll~~~l~iv~ig~~l~~~~eg------~~~s~~da~w~a~~~vt~sg~g~gd---~T~~gRl~svvl~l~Gi~~fa~li 269 (858)
.|+++++.+.++.++.+-+-|. ...++.++.| +..+|.-+.|||| .|-.||.++++.-+.|-++-|+++
T Consensus 256 vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmW--li~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallv 333 (489)
T KOG3684|consen 256 VLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMW--LIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLV 333 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHH--HHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHH
Confidence 3444444555555555544342 2345899999 4555556789998 567899999999999999999999
Q ss_pred HHHHHHHH
Q 003003 270 STMTEQFR 277 (858)
Q Consensus 270 ~~it~~l~ 277 (858)
++++--++
T Consensus 334 AvisRKLe 341 (489)
T KOG3684|consen 334 AVIARKLE 341 (489)
T ss_pred HHHHHHHH
Confidence 98887665
No 54
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.61 E-value=1 Score=51.83 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=39.2
Q ss_pred hHHHHHhheeeeeccccccc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 226 EDCLWEAWACLISSSTHLKQ--RTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 278 (858)
Q Consensus 226 ~da~w~a~~~vt~sg~g~gd--~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~~ 278 (858)
.-++||+ ++|.+|.|--| .|...-+|.++=++.|+++||+++|-+.+.+.+
T Consensus 185 ~~S~YWS--tLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtn 237 (536)
T KOG0500|consen 185 LYSLYWS--TLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTN 237 (536)
T ss_pred HHHHHHH--hhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHh
Confidence 3489955 55556666654 667889999999999999999999866665553
No 55
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=89.50 E-value=0.48 Score=53.82 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHccCCceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCC
Q 003003 479 FPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGK 533 (858)
Q Consensus 479 ~p~l~G~tf~el~~~~~~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~ 533 (858)
....+|+..++++. -+.+.+.++.|||+. ++|.+++++++||.+++++.+.+.
T Consensus 422 ~~~~ig~~lr~l~~-p~~~~~~~v~Rd~q~-i~p~g~t~l~~gD~l~v~~~~~d~ 474 (574)
T COG3263 422 DKWCVGAALRNLRM-PKWTRIAAVFRDGQL-IHPQGSTRLREGDVLCVIGSERDL 474 (574)
T ss_pred CCcccchhhhhccC-CccceeeeEEecCce-eccCCCceeecCCEEEEEeccccH
Confidence 44688999888743 236889999999995 799999999999999999998654
No 56
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.38 E-value=9.2 Score=43.83 Aligned_cols=179 Identities=14% Similarity=0.099 Sum_probs=105.1
Q ss_pred CeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 295 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 295 ~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
..|+|+|.|.+|..++..|...+. .+|.+ +++.++..+++...- +.++-+++=|+.+.+.|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d------------~~V~i-AdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~ 63 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD------------GEVTI-ADRSKEKCARIAELI-----GGKVEALQVDAADVDALV 63 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC------------ceEEE-EeCCHHHHHHHHhhc-----cccceeEEecccChHHHH
Confidence 358999999999999999988653 25665 588888888775532 124555677999999998
Q ss_pred hcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCccc----HHHHHhcCCCeEEehHHHHHHHH
Q 003003 375 RAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNT----CELLKSLSGLKVEPVENVASKLF 450 (858)
Q Consensus 375 rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~----~~~l~~ag~d~Vi~~~~i~~~ll 450 (858)
++ +.+.+.||-+.+.. .+.+.+..++. ..++.+-...+++. .+..+.+|..-|.
T Consensus 64 ~l-i~~~d~VIn~~p~~----~~~~i~ka~i~-------~gv~yvDts~~~~~~~~~~~~a~~Agit~v~---------- 121 (389)
T COG1748 64 AL-IKDFDLVINAAPPF----VDLTILKACIK-------TGVDYVDTSYYEEPPWKLDEEAKKAGITAVL---------- 121 (389)
T ss_pred HH-HhcCCEEEEeCCch----hhHHHHHHHHH-------hCCCEEEcccCCchhhhhhHHHHHcCeEEEc----------
Confidence 88 45559777766543 24666655554 24565544444443 2335566643222
Q ss_pred HHHHcCCCHHHHHHH-----Hhc-ccCcEEEEecCCC-----CCCCC---HHHHHccCCceEEEEEEECCEEEECCCCCc
Q 003003 451 VQCSRQKGLIKIYRH-----LLN-YRKNIFNLWSFPN-----LAGIK---YRQLRRGFQEAVVCGLYRNGKIYFHPNDDE 516 (858)
Q Consensus 451 aq~~~~Pgl~~v~~~-----Ll~-~~g~Ei~i~~~p~-----l~G~t---f~el~~~~~~aivIGI~r~G~~~lnP~~d~ 516 (858)
.+-..||+.+++-. +.+ .+.-.+|....|+ +...+ .....+.+ ...+=+|++|+..-.|+-+.
T Consensus 122 -~~G~dPGi~nv~a~~a~~~~~~~i~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~--~~p~~~~~~Gk~~~v~~~~~ 198 (389)
T COG1748 122 -GCGFDPGITNVLAAYAAKELFDEIESIDIYVGGLGEHGDNPLGYATTWSPEINLREY--TRPARYWENGKWVEVDPLEE 198 (389)
T ss_pred -ccCcCcchHHHHHHHHHHHhhccccEEEEEEecCCCCCCCCccceeeecHHHhHHHh--cCceEEEeCCEEEEecCccc
Confidence 45577888887632 221 1113455444442 22222 11111112 23455778898766666543
No 57
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=88.84 E-value=1.1 Score=46.79 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=46.7
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...+++|+|.|+.+...++.|.+++. .|+|++....++++++... ..+.+. ...
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-------------~V~VIs~~~~~~l~~l~~~-------~~i~~~------~~~ 62 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-------------HIVVISPELTENLVKLVEE-------GKIRWK------QKE 62 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------------eEEEEcCCCCHHHHHHHhC-------CCEEEE------ecC
Confidence 46689999999999999999998654 6777765444455554431 123322 234
Q ss_pred HHhcCccccCeEEEecCCC
Q 003003 373 YERAAANKARAIIILPTKG 391 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~ 391 (858)
++.+.+..|+.| |.++++
T Consensus 63 ~~~~~l~~adlV-iaaT~d 80 (202)
T PRK06718 63 FEPSDIVDAFLV-IAATND 80 (202)
T ss_pred CChhhcCCceEE-EEcCCC
Confidence 556667889954 445543
No 58
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=0.81 Score=46.32 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEEEEecCCC
Q 003003 799 NPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEG 852 (858)
Q Consensus 799 ~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LIVI~~~~~ 852 (858)
+.|..+|.-. -.+|--+|+++|++.+++||+ + ++.+.+||.||+-+++.+
T Consensus 133 gktLg~l~L~-t~tGvrVIAIRRG~~wi~~Pd-~--~~~Ir~gDvLIarG~~~g 182 (204)
T COG3273 133 GKTLGELDLA-TNTGVRVIAIRRGERWIYGPD-E--DTKIREGDVLIARGTDAG 182 (204)
T ss_pred ccchhhhccc-cccceEEEEEecCCccccCCC-c--cceeccCCEEEEecchhh
Confidence 4455555322 278999999999999999996 4 469999999999996654
No 59
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=87.76 E-value=2.4 Score=42.31 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=34.6
Q ss_pred CChhHHHHHhheeeeeccccccc---C-----CchhHHHH-HHHHHHHHHHHHHHHHHH
Q 003003 223 QSLEDCLWEAWACLISSSTHLKQ---R-----TRVERVIG-FILAIWGILFYSRLLSTM 272 (858)
Q Consensus 223 ~s~~da~w~a~~~vt~sg~g~gd---~-----T~~gRl~s-vvl~l~Gi~~fa~li~~i 272 (858)
.++..++|+++.++ +|.|+++ . +..+.++. ..++++++++++.++|.+
T Consensus 144 ~~~~~s~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLYWLFQTM--TGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHHHHHHHH--TTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccc--ccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 67899999877665 4556665 2 45677777 556677778889998865
No 60
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=86.89 E-value=3.4 Score=43.18 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=48.7
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...+++|+|.|.++..-++.|.+++. .|+|+++...++++.+.+. + ++.++.|+.. .++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-------------~VtVvsp~~~~~l~~l~~~------~-~i~~~~~~~~-~~d 66 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-------------QLRVIAEELESELTLLAEQ------G-GITWLARCFD-ADI 66 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-------------EEEEEcCCCCHHHHHHHHc------C-CEEEEeCCCC-HHH
Confidence 35689999999999999999998654 6888877666666666541 2 4656677766 445
Q ss_pred HHhcCccccCeEEEecC
Q 003003 373 YERAAANKARAIIILPT 389 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~ 389 (858)
| +.|+.| ++++
T Consensus 67 l-----~~~~lV-i~at 77 (205)
T TIGR01470 67 L-----EGAFLV-IAAT 77 (205)
T ss_pred h-----CCcEEE-EECC
Confidence 4 567754 4454
No 61
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=86.45 E-value=3.9 Score=45.95 Aligned_cols=75 Identities=11% Similarity=0.159 Sum_probs=46.4
Q ss_pred CChhHHHHHhheeeeecccccccCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCeEEE
Q 003003 223 QSLEDCLWEAWACLISSSTHLKQRT---RVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIV 299 (858)
Q Consensus 223 ~s~~da~w~a~~~vt~sg~g~gd~T---~~gRl~svvl~l~Gi~~fa~li~~it~~l~~~~~~lr~G~~~~v~~~~HIII 299 (858)
.||..||-+++.+=|+-|||+--.| +.+-+..++-.+.|.++=++++|.+.. ++.+-++.. .....++|-||
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~a----KiarPkKRA-eTl~FS~~AVI 185 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFA----KIARPKKRA-ETLIFSDHAVI 185 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCchhhh-heeeeccceEE
Confidence 5677888866655554444444355 456566666778888887777776554 443323332 23567899998
Q ss_pred Ecc
Q 003003 300 CGV 302 (858)
Q Consensus 300 ~G~ 302 (858)
|=-
T Consensus 186 ~~R 188 (400)
T KOG3827|consen 186 ALR 188 (400)
T ss_pred Eee
Confidence 843
No 62
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=83.90 E-value=5.1 Score=41.82 Aligned_cols=56 Identities=7% Similarity=-0.024 Sum_probs=40.6
Q ss_pred CCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCC
Q 003003 596 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN 662 (858)
Q Consensus 596 ~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td 662 (858)
.++++|+|+|+.+..-++.|.+ .|..|++++....++..+. .+ .-++.++.|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~---~ga~VtVvsp~~~~~l~~l-~~-------~~~i~~~~~~~~~ 64 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK---AGAQLRVIAEELESELTLL-AE-------QGGITWLARCFDA 64 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHH-HH-------cCCEEEEeCCCCH
Confidence 4699999999999999999965 4678999987554443322 11 1257779998874
No 63
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=83.78 E-value=7.5 Score=41.00 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=29.6
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR 341 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~ 341 (858)
+.-+++|.|+|.+|..+++.|.+.+. .+|.++|.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~-------------~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGG-------------KVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-------------EEEEEEcCCC
Confidence 46699999999999999999988543 5777778766
No 64
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=83.62 E-value=5 Score=45.75 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=52.2
Q ss_pred EEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHhc
Q 003003 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERA 376 (858)
Q Consensus 297 III~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~rA 376 (858)
|+|+|.|..|..+++.|.+.... ..|+ +++++.+.++++.+.. .+.++-++.-|..+.+.|+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~-----------~~v~-va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~ 64 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF-----------EEVT-VADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAEL 64 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE------------EEE-EEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC-----------CcEE-EEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHH
Confidence 78999999999999999876431 1444 5699998888876532 245567778999999998888
Q ss_pred CccccCeEEEecC
Q 003003 377 AANKARAIIILPT 389 (858)
Q Consensus 377 ~i~~A~aVIIl~~ 389 (858)
+++++.||-++.
T Consensus 65 -~~~~dvVin~~g 76 (386)
T PF03435_consen 65 -LRGCDVVINCAG 76 (386)
T ss_dssp -HTTSSEEEE-SS
T ss_pred -HhcCCEEEECCc
Confidence 888895554443
No 65
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=82.00 E-value=5.7 Score=43.15 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=55.4
Q ss_pred CCCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|.|... .|..++++|.+.+. ++++ ..++++.++++.+++... .+..|.++.-|.++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-------------~liL-vaR~~~kL~~la~~l~~~-~~v~v~vi~~DLs~~~ 69 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-------------NLIL-VARREDKLEALAKELEDK-TGVEVEVIPADLSDPE 69 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EeCcHHHHHHHHHHHHHh-hCceEEEEECcCCChh
Confidence 467899999976 89999999998655 4554 478888888887766333 3677878889999999
Q ss_pred HHHhcCc
Q 003003 372 SYERAAA 378 (858)
Q Consensus 372 ~L~rA~i 378 (858)
++++.--
T Consensus 70 ~~~~l~~ 76 (265)
T COG0300 70 ALERLED 76 (265)
T ss_pred HHHHHHH
Confidence 8888764
No 66
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=81.50 E-value=0.29 Score=55.74 Aligned_cols=61 Identities=11% Similarity=0.233 Sum_probs=42.2
Q ss_pred HHHHHHHhhheeeeccCCCChhHHHHHhheeeeecccccccCC---chhH--------HHHHHHHHHHHHHHHHHH
Q 003003 205 FSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQRT---RVER--------VIGFILAIWGILFYSRLL 269 (858)
Q Consensus 205 l~iv~ig~~l~~~~eg~~~s~~da~w~a~~~vt~sg~g~gd~T---~~gR--------l~svvl~l~Gi~~fa~li 269 (858)
++.+..|+.++...| ++++++|||++| ++.+|.|+||.. ..++ .+..+.++.|+..++...
T Consensus 225 ~~~~~~~~~~~~~~e--~w~f~~~~Yf~f--isltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 225 LVYLSPGSLLFSLQE--QWSFIEAFYFSF--ISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred EEEecccceeeecee--ceeeEeeeeEEE--EEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 345556666666665 499999999554 555677888833 3444 567778888888777666
No 67
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=81.36 E-value=8.7 Score=38.32 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=50.3
Q ss_pred EEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 297 III~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
|+|+|. |..|..++++|.+.++ .|+.++. +++..+. . .+.++ +.||..+++.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-------------~V~~~~R-~~~~~~~--~------~~~~~--~~~d~~d~~~~~~ 56 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-------------EVTALVR-SPSKAED--S------PGVEI--IQGDLFDPDSVKA 56 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-------------EEEEEES-SGGGHHH--C------TTEEE--EESCTTCHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCC-------------EEEEEec-Cchhccc--c------ccccc--ceeeehhhhhhhh
Confidence 689995 8999999999998765 5777754 4444443 1 14444 5899999998888
Q ss_pred cCccccCeEEEecCC
Q 003003 376 AAANKARAIIILPTK 390 (858)
Q Consensus 376 A~i~~A~aVIIl~~~ 390 (858)
+ +..+++|+.+...
T Consensus 57 a-l~~~d~vi~~~~~ 70 (183)
T PF13460_consen 57 A-LKGADAVIHAAGP 70 (183)
T ss_dssp H-HTTSSEEEECCHS
T ss_pred h-hhhcchhhhhhhh
Confidence 6 5589988776653
No 68
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=80.57 E-value=5.5 Score=49.00 Aligned_cols=58 Identities=10% Similarity=0.416 Sum_probs=46.5
Q ss_pred cCCCChhHHHHHhheeeeecccccc-cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 220 DETQSLEDCLWEAWACLISSSTHLK-QRTRVERVIGFILAIWGILFYSRLLSTMTEQFR 277 (858)
Q Consensus 220 g~~~s~~da~w~a~~~vt~sg~g~g-d~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~ 277 (858)
|+..++..|+|.-|..+..-++-.. +.++.+|+...+-.+++++++|..++-++..+.
T Consensus 605 gp~FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 605 GPSFTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred CcceehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999998877666444 467889999999999999999888876666553
No 69
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.50 E-value=6.9 Score=38.26 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=46.5
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCC--hHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP--RKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~--~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
++++|.|.+ ..|..++++|.+.+. ..|++..++ .+..+++.+++... +.++.+...|.++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-------------~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~ 65 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-------------RVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPE 65 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-------------EEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-------------eEEEEeeeccccccccccccccccc--ccccccccccccccc
Confidence 378999976 489999999998633 334444555 55566665544322 567777889999998
Q ss_pred HHHhcC
Q 003003 372 SYERAA 377 (858)
Q Consensus 372 ~L~rA~ 377 (858)
.++++-
T Consensus 66 ~~~~~~ 71 (167)
T PF00106_consen 66 SIRALI 71 (167)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 877663
No 70
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=80.50 E-value=5.9 Score=39.80 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=19.8
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
.-.+++|||||..|..+++.|...+.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga 47 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGA 47 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCC
Confidence 35579999999999999999988544
No 71
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=79.28 E-value=11 Score=39.48 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=49.1
Q ss_pred EEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh-HHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 297 III~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~-~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
|+|.|. |..|..+++.|...+. .|.++.-.++ +..+.+.. .|..++ .||..+.+.|.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-------------~V~~l~R~~~~~~~~~l~~------~g~~vv--~~d~~~~~~l~ 59 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-------------SVRALVRDPSSDRAQQLQA------LGAEVV--EADYDDPESLV 59 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-------------CEEEEESSSHHHHHHHHHH------TTTEEE--ES-TT-HHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCCC-------------CcEEEEeccchhhhhhhhc------ccceEe--ecccCCHHHHH
Confidence 578886 8999999999998544 5666655543 33344332 156654 89999999997
Q ss_pred hcCccccCeEEEecC
Q 003003 375 RAAANKARAIIILPT 389 (858)
Q Consensus 375 rA~i~~A~aVIIl~~ 389 (858)
++ .+.+++|+++.+
T Consensus 60 ~a-l~g~d~v~~~~~ 73 (233)
T PF05368_consen 60 AA-LKGVDAVFSVTP 73 (233)
T ss_dssp HH-HTTCSEEEEESS
T ss_pred HH-HcCCceEEeecC
Confidence 76 889998877665
No 72
>PRK06194 hypothetical protein; Provisional
Probab=76.99 E-value=11 Score=40.48 Aligned_cols=67 Identities=9% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+ -.|..++++|.+.+. .|+++ +++.+.+++..++.... +.++.++.||.++.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~ 69 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-------------KLVLA-DVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQ 69 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-------------EEEEE-eCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence 4578999875 589999999987654 55554 66665555554433111 4567777999999998
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 70 ~~~~ 73 (287)
T PRK06194 70 VEAL 73 (287)
T ss_pred HHHH
Confidence 8775
No 73
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.78 E-value=49 Score=34.33 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=34.2
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHh
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~ 350 (858)
...+++|.|+|+.|..+++.|.+.+. .|+ +.|.+++.++.+.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~-------------~Vv-v~D~~~~~~~~~~~~ 70 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGA-------------KLI-VADINEEAVARAAEL 70 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------------EEE-EEcCCHHHHHHHHHH
Confidence 34579999999999999999988654 565 568888777776553
No 74
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=76.65 E-value=30 Score=38.38 Aligned_cols=119 Identities=14% Similarity=0.226 Sum_probs=68.8
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
....|+|+|.|..|..+++.|...+. ..|++ .+++++..+.+.+.+ +..++ ..++
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~------------~~V~v-~~r~~~ra~~la~~~-----g~~~~-------~~~~ 231 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV------------AEITI-ANRTYERAEELAKEL-----GGNAV-------PLDE 231 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC------------CEEEE-EeCCHHHHHHHHHHc-----CCeEE-------eHHH
Confidence 46789999999999999999987432 24554 488776666665543 22221 2345
Q ss_pred HHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHH-HHHhcCCCeEEehHHH
Q 003003 373 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE-LLKSLSGLKVEPVENV 445 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~-~l~~ag~d~Vi~~~~i 445 (858)
+..+ +.+|+.||. ++..+ +. .+.+...+..+ . .+..+++-+..|.+.+ ......+-.++..+++
T Consensus 232 ~~~~-l~~aDvVi~-at~~~--~~-~~~~~~~~~~~--~--~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl 296 (311)
T cd05213 232 LLEL-LNEADVVIS-ATGAP--HY-AKIVERAMKKR--S--GKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDL 296 (311)
T ss_pred HHHH-HhcCCEEEE-CCCCC--ch-HHHHHHHHhhC--C--CCCeEEEEeCCCCCCchhhccCCCcEEEEHHHh
Confidence 5544 677895554 44333 11 23233333321 1 1235788888877664 3444444467777644
No 75
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=75.41 E-value=10 Score=38.48 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=44.2
Q ss_pred CeEEEEc-cCchHHHHHHHHHhcCccccccccccCCCceEEEEeCC--ChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 295 DHIIVCG-VNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL--PRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 295 ~HIII~G-~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~--~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
+.++|.| .|..+..+++.|...+. ..++++... +..+.++..+++.. .+.+|.++..|.++++
T Consensus 1 gtylitGG~gglg~~la~~La~~~~------------~~~il~~r~~~~~~~~~~~i~~l~~--~g~~v~~~~~Dv~d~~ 66 (181)
T PF08659_consen 1 GTYLITGGLGGLGQSLARWLAERGA------------RRLILLGRSGAPSAEAEAAIRELES--AGARVEYVQCDVTDPE 66 (181)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-------------SEEEEEESSGGGSTTHHHHHHHHHH--TT-EEEEEE--TTSHH
T ss_pred CEEEEECCccHHHHHHHHHHHHcCC------------CEEEEeccCCCccHHHHHHHHHHHh--CCCceeeeccCccCHH
Confidence 3577886 67899999999998654 368877665 12222333333211 2778999999999999
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 67 ~v~~~ 71 (181)
T PF08659_consen 67 AVAAA 71 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98887
No 76
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=75.32 E-value=12 Score=33.41 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=34.2
Q ss_pred EEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhh
Q 003003 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 351 (858)
Q Consensus 297 III~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~ 351 (858)
|-|+|.|+.|..+++.|...+.. ..+|.+..+++++..+++.+++
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~----------~~~v~~~~~r~~~~~~~~~~~~ 46 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIK----------PHEVIIVSSRSPEKAAELAKEY 46 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-----------GGEEEEEEESSHHHHHHHHHHC
T ss_pred EEEECCCHHHHHHHHHHHHCCCC----------ceeEEeeccCcHHHHHHHHHhh
Confidence 66889999999999999987520 1367766688888888876654
No 77
>PRK08265 short chain dehydrogenase; Provisional
Probab=75.16 E-value=14 Score=39.44 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=45.8
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..++++|.+.+. .|+++ +++++..+++.+.. +.++.++.+|.++++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~ 66 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-------------RVAIV-DIDADNGAAVAASL-----GERARFIATDITDDAA 66 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh-----CCeeEEEEecCCCHHH
Confidence 457888887 5689999999998654 45544 77766666655433 3456677899999988
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 67 ~~~~ 70 (261)
T PRK08265 67 IERA 70 (261)
T ss_pred HHHH
Confidence 8765
No 78
>COG2985 Predicted permease [General function prediction only]
Probab=74.96 E-value=2.7 Score=48.67 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=44.2
Q ss_pred cCCCCCCCCHHHHHccCCc-eEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCCCC
Q 003003 478 SFPNLAGIKYRQLRRGFQE-AVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKK 535 (858)
Q Consensus 478 ~~p~l~G~tf~el~~~~~~-aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~~~ 535 (858)
..|++.|++++|+.....+ +.+==++|+|. ..+|++|+.++.||.+.+++.++...+
T Consensus 210 ~~p~~~g~~l~d~p~l~~~~v~~sRikrd~~-~~~p~~~~~i~~Gd~l~lVG~~~~l~r 267 (544)
T COG2985 210 VNPNLDGLNLRDLPILRQEGVYCSRIKRDGI-LAVPDPDTIIQVGDELHLVGYPDALAR 267 (544)
T ss_pred cCCCccccchhhcccccCCceEEEEEecCCe-eecCCCCcccccCcEEEecCChHHHHH
Confidence 4788999999999765443 44444555655 689999999999999999999876544
No 79
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=74.55 E-value=7.8 Score=37.32 Aligned_cols=55 Identities=13% Similarity=0.373 Sum_probs=38.5
Q ss_pred ChhHHHHHhheeeeecccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 224 SLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRN 278 (858)
Q Consensus 224 s~~da~w~a~~~vt~sg~g~gd~T~~gRl~svvl~l~Gi~~fa~li~~it~~l~~ 278 (858)
++.+++|+++.+++..+....+.+..+|++.++..++.+++.+...|.++..+..
T Consensus 44 ~~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4778999777666544444445678899999999999998888888877777653
No 80
>PRK09186 flagellin modification protein A; Provisional
Probab=73.79 E-value=14 Score=38.91 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|+|.+ ..|..++++|.+.+. .|+++ .++++..+++.++......+..+.++.+|.++++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~ 69 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-------------IVIAA-DIDKEALNELLESLGKEFKSKKLSLVELDITDQES 69 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-ecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHH
Confidence 4578889885 599999999988654 45554 66665555544432111112234455788888887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 70 ~~~~ 73 (256)
T PRK09186 70 LEEF 73 (256)
T ss_pred HHHH
Confidence 7664
No 81
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=73.54 E-value=18 Score=37.88 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=46.2
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|.|.+ ..|..++++|.+.+. .++++..++++..+++.+... + .+.++.++.+|.++++
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~l~-~-~~~~~~~~~~D~~~~~ 69 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEGA-------------KVVINYNSSKEAAENLVNELG-K-EGHDVYAVQADVSKVE 69 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-------------EEEEEcCCcHHHHHHHHHHHH-h-cCCeEEEEECCCCCHH
Confidence 35689999875 589999999987654 455544445555544433221 1 1446777899999999
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.+.++
T Consensus 70 ~~~~~ 74 (247)
T PRK12935 70 DANRL 74 (247)
T ss_pred HHHHH
Confidence 88776
No 82
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=73.47 E-value=60 Score=29.90 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=47.9
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
++.|+|.|..+...+..+..... +-.++-+.|.+++..+...+.+ +..+ | ++.+.|..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~-----------~~~v~~v~d~~~~~~~~~~~~~-----~~~~-~-----~~~~~ll~ 59 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSP-----------DFEVVAVCDPDPERAEAFAEKY-----GIPV-Y-----TDLEELLA 59 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTT-----------TEEEEEEECSSHHHHHHHHHHT-----TSEE-E-----SSHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCC-----------CcEEEEEEeCCHHHHHHHHHHh-----cccc-h-----hHHHHHHH
Confidence 47899999999999999887633 1256666788888777766544 4552 1 33555444
Q ss_pred cCccccCeEEEecCC
Q 003003 376 AAANKARAIIILPTK 390 (858)
Q Consensus 376 A~i~~A~aVIIl~~~ 390 (858)
.. +.+.|+|.+++
T Consensus 60 ~~--~~D~V~I~tp~ 72 (120)
T PF01408_consen 60 DE--DVDAVIIATPP 72 (120)
T ss_dssp HT--TESEEEEESSG
T ss_pred hh--cCCEEEEecCC
Confidence 32 78888776653
No 83
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=73.17 E-value=8 Score=40.24 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=28.5
Q ss_pred CCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCC
Q 003003 596 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 632 (858)
Q Consensus 596 ~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p 632 (858)
.+++||+|+|+.+...++.|.+ .|..|++++...
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs~~~ 43 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK---YGAHIVVISPEL 43 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---CCCeEEEEcCCC
Confidence 5799999999999999999965 466799998643
No 84
>PRK06914 short chain dehydrogenase; Provisional
Probab=73.00 E-value=18 Score=38.82 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=44.3
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|+|. |..|..++++|.+.+. .|+++ .++++..+.+.+.......+.++.++.+|.++++.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~ 68 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-------------LVIAT-MRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNS 68 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-------------EEEEE-eCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHH
Confidence 357899987 4699999999987654 45554 56555555543322111112356667899999998
Q ss_pred HHh
Q 003003 373 YER 375 (858)
Q Consensus 373 L~r 375 (858)
+++
T Consensus 69 ~~~ 71 (280)
T PRK06914 69 IHN 71 (280)
T ss_pred HHH
Confidence 875
No 85
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=72.67 E-value=15 Score=39.03 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+. .|..++++|.+.+. .++++ +++++.+++..+.+... +.++.++.+|.++++.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~-------------~vv~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~ 73 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA-------------TIVFN-DINQELVDKGLAAYREL--GIEAHGYVCDVTDEDG 73 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 45788888864 89999999987654 56655 66666666554433211 3456677899999988
Q ss_pred HHhcC
Q 003003 373 YERAA 377 (858)
Q Consensus 373 L~rA~ 377 (858)
++++-
T Consensus 74 ~~~~~ 78 (265)
T PRK07097 74 VQAMV 78 (265)
T ss_pred HHHHH
Confidence 77753
No 86
>PRK08251 short chain dehydrogenase; Provisional
Probab=72.59 E-value=18 Score=37.97 Aligned_cols=68 Identities=7% Similarity=0.118 Sum_probs=44.9
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..++|.|.+ ..|..++++|.+.+. .|+++ +++++..+++.+.......+.++.++.+|.++++.+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 68 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-------------DLALC-ARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQV 68 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHH
Confidence 468889865 589999999987543 55555 666655555443322222245677778999999877
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 69 ~~~ 71 (248)
T PRK08251 69 FEV 71 (248)
T ss_pred HHH
Confidence 653
No 87
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.36 E-value=19 Score=37.48 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=45.7
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
+..+++|.|.+ ..|..++++|.+.+. .|+++ .++++..+++.+.... .+.++.++.+|.++++
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-------------~Vi~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~ 69 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-------------NVGLL-ARTEENLKAVAEEVEA--YGVKVVIATADVSDYE 69 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHH--hCCeEEEEECCCCCHH
Confidence 35688999876 589999999987544 45554 6666555554433211 1345777789999998
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 70 ~~~~~ 74 (239)
T PRK07666 70 EVTAA 74 (239)
T ss_pred HHHHH
Confidence 87765
No 88
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=72.23 E-value=58 Score=33.19 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=50.0
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|+|. |..+..+++.|...+. .++++ .++.+..+.+.+.+... .+..+. ..+..+.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-------------~V~l~-~R~~~~~~~l~~~l~~~-~~~~~~--~~~~~~~~ 89 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-------------RVVLV-GRDLERAQKAADSLRAR-FGEGVG--AVETSDDA 89 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------------EEEEE-cCCHHHHHHHHHHHHhh-cCCcEE--EeeCCCHH
Confidence 4568999996 9999999999987543 56655 67766666655443211 133333 45667777
Q ss_pred HHHhcCccccCeEEEecCC
Q 003003 372 SYERAAANKARAIIILPTK 390 (858)
Q Consensus 372 ~L~rA~i~~A~aVIIl~~~ 390 (858)
++.++ +.+|+. ||.++.
T Consensus 90 ~~~~~-~~~~di-Vi~at~ 106 (194)
T cd01078 90 ARAAA-IKGADV-VFAAGA 106 (194)
T ss_pred HHHHH-HhcCCE-EEECCC
Confidence 76643 467884 454543
No 89
>PLN02780 ketoreductase/ oxidoreductase
Probab=71.94 E-value=41 Score=37.41 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=38.0
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCC
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLT 368 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~ 368 (858)
...++|.|.+. .|..++++|.+.+. .|+++ +++++.++++.++....+.+.++.....|.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-------------~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-------------NLVLV-ARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------CEEEE-ECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 45788889865 89999999987654 45554 7777777766554322221234444445544
No 90
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.81 E-value=18 Score=38.16 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=46.2
Q ss_pred cCCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 292 LESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 292 ~~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
.+..+++|.|. |..|..++++|...+. .|+++ .++++.++.+...+... +.++.++.+|.++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~ 70 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-------------KVVLA-SRRVERLKELRAEIEAE--GGAAHVVSLDVTDY 70 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEecCCCH
Confidence 34678899987 5699999999987544 45544 66666666554432111 23455667899988
Q ss_pred HHHHhc
Q 003003 371 KSYERA 376 (858)
Q Consensus 371 e~L~rA 376 (858)
++++++
T Consensus 71 ~~~~~~ 76 (258)
T PRK06949 71 QSIKAA 76 (258)
T ss_pred HHHHHH
Confidence 887775
No 91
>PRK07024 short chain dehydrogenase; Provisional
Probab=71.52 E-value=17 Score=38.52 Aligned_cols=66 Identities=8% Similarity=0.121 Sum_probs=45.7
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+ ..|..++++|.+.+. .|+++ +++++.++++.+..... + ++.+..+|.++++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~--~-~~~~~~~Dl~~~~~ 64 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-------------TLGLV-ARRTDALQAFAARLPKA--A-RVSVYAADVRDADA 64 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHhcccC--C-eeEEEEcCCCCHHH
Confidence 3578999865 589999999987543 56654 67666666655433111 2 56777899999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 65 i~~~ 68 (257)
T PRK07024 65 LAAA 68 (257)
T ss_pred HHHH
Confidence 7664
No 92
>PRK07454 short chain dehydrogenase; Provisional
Probab=71.27 E-value=20 Score=37.47 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=44.6
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.-++|.|. +..|..++++|.+.+. .|+++ +++++..+++.+..... +.++.++.+|.++++.+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~ 70 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGW-------------DLALV-ARSQDALEALAAELRST--GVKAAAYSIDLSNPEAI 70 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHH
Confidence 35788886 5689999999987544 45554 67666665554432111 34566678999999887
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
.++
T Consensus 71 ~~~ 73 (241)
T PRK07454 71 APG 73 (241)
T ss_pred HHH
Confidence 665
No 93
>PRK07063 short chain dehydrogenase; Provisional
Probab=71.20 E-value=19 Score=38.13 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=46.6
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++..+++.++......+.++.+..+|.++++.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-------------~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 72 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-------------AVALA-DLDAALAERAAAAIARDVAGARVLAVPADVTDAAS 72 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHH
Confidence 4578888876 489999999997654 55554 77766666655443211123456677889999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 73 ~~~~ 76 (260)
T PRK07063 73 VAAA 76 (260)
T ss_pred HHHH
Confidence 7765
No 94
>PRK06924 short chain dehydrogenase; Provisional
Probab=70.79 E-value=15 Score=38.55 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=42.5
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.+++|+|. |..|..++++|.+.+. .|+++...+.+.++.+.+.. +.++.+..+|.++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-------------~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~ 63 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-------------HVISISRTENKELTKLAEQY-----NSNLTFHSLDLQDVHEL 63 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-------------EEEEEeCCchHHHHHHHhcc-----CCceEEEEecCCCHHHH
Confidence 37899986 5699999999997654 56666433334455543321 33455667898888887
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 64 ~~~ 66 (251)
T PRK06924 64 ETN 66 (251)
T ss_pred HHH
Confidence 665
No 95
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=70.66 E-value=20 Score=37.89 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=46.7
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|.|. +..|..++++|.+.+. .|+++ +++++..+.+.+... + .+.++.+..+|.++++
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~i~-~-~~~~~~~~~~D~~~~~ 72 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-------------EVILN-GRDPAKLAAAAESLK-G-QGLSAHALAFDVTDHD 72 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHH-h-cCceEEEEEccCCCHH
Confidence 3567888887 5699999999987654 56554 776666655444331 1 1345667789999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 73 ~~~~~ 77 (255)
T PRK07523 73 AVRAA 77 (255)
T ss_pred HHHHH
Confidence 87776
No 96
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=70.47 E-value=19 Score=38.20 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=44.9
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+. .|..++++|.+.+. .|++...++++..+.+.+.... ..+.++.++.+|.++++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~ 73 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-------------NIAFTYNSNVEEANKIAEDLEQ-KYGIKAKAYPLNILEPET 73 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHH-hcCCceEEEEcCCCCHHH
Confidence 45778888865 89999999998654 5665545566555554433211 114456667888888877
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 74 ~~~~ 77 (260)
T PRK08416 74 YKEL 77 (260)
T ss_pred HHHH
Confidence 7655
No 97
>PRK07109 short chain dehydrogenase; Provisional
Probab=70.29 E-value=19 Score=40.33 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
....++|.|.+ -.|..++++|.+.+. .|+++ .++++.++++.++... .+.++.++.+|.++++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-------------~Vvl~-~R~~~~l~~~~~~l~~--~g~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-------------KVVLL-ARGEEGLEALAAEIRA--AGGEALAVVADVADAE 70 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHH--cCCcEEEEEecCCCHH
Confidence 35678888875 589999999987654 56655 6766666665543311 1456777789999999
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 71 ~v~~~ 75 (334)
T PRK07109 71 AVQAA 75 (334)
T ss_pred HHHHH
Confidence 88876
No 98
>PRK12746 short chain dehydrogenase; Provisional
Probab=69.99 E-value=23 Score=37.17 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=45.6
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .++++..++.+..++..+..... +.++.+..+|.+++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~-------------~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~ 70 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA-------------LVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDG 70 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHH
Confidence 4678999875 589999999987654 45554456665555544332111 3456667899999998
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
+.++
T Consensus 71 i~~~ 74 (254)
T PRK12746 71 VKKL 74 (254)
T ss_pred HHHH
Confidence 8765
No 99
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=69.62 E-value=28 Score=44.95 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=56.4
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccc-cccccC-CCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVR-LGTATA-RKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~r-lG~~~~-~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
..+|+|+|.|..|...++.|...... + .|...+ +....|.++|.+.+..+++.+.+ .+.. .+.-|.++.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~--~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~~~~--~v~lDv~D~e 640 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTI--SYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----ENAE--AVQLDVSDSE 640 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCc--cccccccccccccEEEEECCCHHHHHHHHHhc----CCCc--eEEeecCCHH
Confidence 56899999999999999999763210 0 010001 01234556788887777766533 1222 3466788888
Q ss_pred HHHhcCccccCeEEEecCC
Q 003003 372 SYERAAANKARAIIILPTK 390 (858)
Q Consensus 372 ~L~rA~i~~A~aVIIl~~~ 390 (858)
.|.++ ++.+++||++.+.
T Consensus 641 ~L~~~-v~~~DaVIsalP~ 658 (1042)
T PLN02819 641 SLLKY-VSQVDVVISLLPA 658 (1042)
T ss_pred HHHHh-hcCCCEEEECCCc
Confidence 88776 4569988887653
No 100
>PRK09291 short chain dehydrogenase; Provisional
Probab=69.58 E-value=26 Score=36.87 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=51.4
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.+++|.|.+ ..|..++++|.+.+. .++++ .++++..+.+.+.... .+.++.++.+|.++++.+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~ 66 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-------------NVIAG-VQIAPQVTALRAEAAR--RGLALRVEKLDLTDAIDR 66 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCcceEEEeeCCCHHHH
Confidence 478999885 589999999987654 45554 4554444444332211 134566678999999999
Q ss_pred HhcCccccCeEEEec
Q 003003 374 ERAAANKARAIIILP 388 (858)
Q Consensus 374 ~rA~i~~A~aVIIl~ 388 (858)
+++--...+.+|-.+
T Consensus 67 ~~~~~~~id~vi~~a 81 (257)
T PRK09291 67 AQAAEWDVDVLLNNA 81 (257)
T ss_pred HHHhcCCCCEEEECC
Confidence 887545778655544
No 101
>PRK05854 short chain dehydrogenase; Provisional
Probab=69.30 E-value=21 Score=39.48 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=44.9
Q ss_pred CCCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...++||.|.+. .|..++++|.+.+. .|++. .++.+..++..++......+.++.++.+|.++.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-------------~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-------------EVILP-VRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLA 78 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHH
Confidence 356788898875 89999999997654 55554 6666555554433211112334556677888877
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
..+++
T Consensus 79 sv~~~ 83 (313)
T PRK05854 79 SVAAL 83 (313)
T ss_pred HHHHH
Confidence 77655
No 102
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.10 E-value=23 Score=36.81 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=45.7
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|. |..|..++++|.+.+. .++++..++++..+.+.+.... .+.++.++.+|.++++.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-------------~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 69 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-------------KVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEED 69 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHH
Confidence 458899987 5799999999987554 4555425655555554443211 13456677899999998
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
+.++
T Consensus 70 ~~~~ 73 (247)
T PRK05565 70 VENL 73 (247)
T ss_pred HHHH
Confidence 8765
No 103
>PRK06172 short chain dehydrogenase; Provisional
Probab=69.00 E-value=21 Score=37.48 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=45.0
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++..+.+.+..... +.++.++.+|.++.+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 70 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-------------KVVVA-DRDAAGGEETVALIREA--GGEALFVACDVTRDAE 70 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 4678899875 589999999987544 55554 66665555544332111 3456677899998887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 71 i~~~ 74 (253)
T PRK06172 71 VKAL 74 (253)
T ss_pred HHHH
Confidence 7764
No 104
>PRK12939 short chain dehydrogenase; Provisional
Probab=68.97 E-value=24 Score=36.82 Aligned_cols=80 Identities=11% Similarity=0.044 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|.|. +..|..++++|.+.+. .++++ +++++..+.+.+..... +.++.+..+|.++++
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~ 69 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-------------TVAFN-DGLAAEARELAAALEAA--GGRAHAIAADLADPA 69 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHH
Confidence 4578999987 5699999999987654 56655 66665555544332111 334666689999998
Q ss_pred HHHhcCc------cccCeEEEec
Q 003003 372 SYERAAA------NKARAIIILP 388 (858)
Q Consensus 372 ~L~rA~i------~~A~aVIIl~ 388 (858)
.++++-- ...+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~a 92 (250)
T PRK12939 70 SVQRFFDAAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 8876532 3467655444
No 105
>PRK06940 short chain dehydrogenase; Provisional
Probab=68.95 E-value=18 Score=38.97 Aligned_cols=66 Identities=14% Similarity=0.286 Sum_probs=42.4
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
+..+||.|.+..|..++++|. .+. .|+++ +++++.++++.++... .+.++.+..+|.++++.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-------------~Vv~~-~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~i 64 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-------------KVLLA-DYNEENLEAAAKTLRE--AGFDVSTQEVDVSSRESV 64 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEEeecCCHHHH
Confidence 457899999989999999994 333 56655 6666555554433211 134555567777777766
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 65 ~~~ 67 (275)
T PRK06940 65 KAL 67 (275)
T ss_pred HHH
Confidence 554
No 106
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.83 E-value=25 Score=36.75 Aligned_cols=79 Identities=15% Similarity=0.068 Sum_probs=50.4
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.+++|.|.+ ..|..++++|.+.+. .++++..++.+..+++.+.... .+.++.++.+|.++++.+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~-------------~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~ 69 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY-------------DIAVNYARSRKAAEETAEEIEA--LGRKALAVKANVGDVEKI 69 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHH
Confidence 578999885 589999999998654 4555445655555544332211 134566678999999987
Q ss_pred HhcCc------cccCeEEEec
Q 003003 374 ERAAA------NKARAIIILP 388 (858)
Q Consensus 374 ~rA~i------~~A~aVIIl~ 388 (858)
+++-- ...+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~id~vi~~a 90 (250)
T PRK08063 70 KEMFAQIDEEFGRLDVFVNNA 90 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 76532 2457554443
No 107
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.45 E-value=22 Score=37.25 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=45.6
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|. |..|..++++|.+.+. .|+++ +++++..+.+.++... .+.++.+..+|.++++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-------------KVVIA-DLNDEAAAAAAEALQK--AGGKAIGVAMDVTDEEA 67 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHH
Confidence 458999986 5699999999987654 56655 6665555554433211 13456667899999998
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 68 ~~~~ 71 (258)
T PRK12429 68 INAG 71 (258)
T ss_pred HHHH
Confidence 8765
No 108
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=68.45 E-value=22 Score=37.41 Aligned_cols=68 Identities=9% Similarity=0.008 Sum_probs=45.3
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
+...++|.|.+ ..|..++++|.+.+. .|+++ +++++..+.+.++.... +.++.++.+|.++++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~ 73 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-------------HVLVN-GRNAATLEAAVAALRAA--GGAAEALAFDIADEE 73 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-------------eEEEE-eCCHHHHHHHHHHHHhc--CCceEEEEccCCCHH
Confidence 35678888875 589999999987544 56655 66665555554433111 334666789999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
++.++
T Consensus 74 ~~~~~ 78 (256)
T PRK06124 74 AVAAA 78 (256)
T ss_pred HHHHH
Confidence 87764
No 109
>PRK07062 short chain dehydrogenase; Provisional
Probab=68.38 E-value=22 Score=37.69 Aligned_cols=69 Identities=9% Similarity=0.094 Sum_probs=45.1
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+. .|..++++|.+.+. .|++ ..++++..++..+.......+.++.+..+|.++++.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA-------------SVAI-CGRDEERLASAEARLREKFPGARLLAARCDVLDEAD 73 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------eEEE-EeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHH
Confidence 46788888864 89999999987654 4554 466665555544333222223456667888888887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 74 v~~~ 77 (265)
T PRK07062 74 VAAF 77 (265)
T ss_pred HHHH
Confidence 7664
No 110
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=68.26 E-value=26 Score=39.52 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=23.9
Q ss_pred cCCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 292 LESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 292 ~~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
..+-||+|+|.|..|..+++.|...+.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGv 48 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGI 48 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 346799999999999999999998765
No 111
>PRK08643 acetoin reductase; Validated
Probab=68.18 E-value=23 Score=37.27 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=43.6
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..++|+|.+ ..|..+++.|.+.+. .|+++ +++++..+.+..+... .+.++.++.+|.++++.+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~ 66 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-------------KVAIV-DYNEETAQAAADKLSK--DGGKAIAVKADVSDRDQV 66 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHH
Confidence 467888876 489999999987544 55555 6666555554433211 134566778999998877
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 67 ~~~ 69 (256)
T PRK08643 67 FAA 69 (256)
T ss_pred HHH
Confidence 653
No 112
>PRK05876 short chain dehydrogenase; Provisional
Probab=67.80 E-value=26 Score=37.81 Aligned_cols=67 Identities=9% Similarity=0.192 Sum_probs=45.8
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ -.|..++++|.+.+. .|++ .+++++.++++.+++... +.++.++.+|.++.+.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~-------------~Vv~-~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~ 69 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-------------RVVL-GDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREE 69 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHH
Confidence 4468888865 589999999987654 4554 477766666655433111 4456667889999988
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 70 v~~~ 73 (275)
T PRK05876 70 VTHL 73 (275)
T ss_pred HHHH
Confidence 8775
No 113
>PRK05866 short chain dehydrogenase; Provisional
Probab=67.50 E-value=22 Score=38.89 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|+|. +..|..++++|.+.+. .|+++ +++++.++++.++.... +.++.++.+|.++.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~-------------~Vi~~-~R~~~~l~~~~~~l~~~--~~~~~~~~~Dl~d~~~ 103 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA-------------TVVAV-ARREDLLDAVADRITRA--GGDAMAVPCDLSDLDA 103 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence 467888887 5589999999987544 56554 67776666655433111 3345667889998887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
+.++
T Consensus 104 v~~~ 107 (293)
T PRK05866 104 VDAL 107 (293)
T ss_pred HHHH
Confidence 6654
No 114
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=67.38 E-value=30 Score=36.72 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=46.0
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..|++|+|.|+++..=++.|.+++. .|+|+++.-.++++.+.+. -++.+...+. .+++|
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA-------------~VtVVap~i~~el~~l~~~-------~~i~~~~r~~-~~~dl 83 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGC-------------YVYILSKKFSKEFLDLKKY-------GNLKLIKGNY-DKEFI 83 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-------------EEEEEcCCCCHHHHHHHhC-------CCEEEEeCCC-ChHHh
Confidence 4599999999999999999988654 6888887755566665431 1233334433 45555
Q ss_pred HhcCccccCeEEEecCC
Q 003003 374 ERAAANKARAIIILPTK 390 (858)
Q Consensus 374 ~rA~i~~A~aVIIl~~~ 390 (858)
+.|..| +++++
T Consensus 84 -----~g~~LV-iaATd 94 (223)
T PRK05562 84 -----KDKHLI-VIATD 94 (223)
T ss_pred -----CCCcEE-EECCC
Confidence 556744 44553
No 115
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=67.05 E-value=23 Score=37.63 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=45.1
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+. .|..++++|.+.+. .|+++ +++++..+.+.+.. +.++.++.+|.++++.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 66 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA-------------RVAVL-ERSAEKLASLRQRF-----GDHVLVVEGDVTSYAD 66 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh-----CCcceEEEccCCCHHH
Confidence 45788998864 89999999998654 45554 77776676665433 2245566889888887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 67 ~~~~ 70 (263)
T PRK06200 67 NQRA 70 (263)
T ss_pred HHHH
Confidence 7664
No 116
>PRK06500 short chain dehydrogenase; Provisional
Probab=66.75 E-value=26 Score=36.53 Aligned_cols=63 Identities=6% Similarity=-0.015 Sum_probs=43.0
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+ ..|..++++|.+.+. .|+++ +++++.++++.++. +.++.++++|.++.+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 66 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA-------------RVAIT-GRDPASLEAARAEL-----GESALVIRADAGDVAA 66 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEe-cCCHHHHHHHHHHh-----CCceEEEEecCCCHHH
Confidence 4578999884 589999999988654 45544 77666666554433 3345566788888776
Q ss_pred HHh
Q 003003 373 YER 375 (858)
Q Consensus 373 L~r 375 (858)
+.+
T Consensus 67 ~~~ 69 (249)
T PRK06500 67 QKA 69 (249)
T ss_pred HHH
Confidence 554
No 117
>PRK07326 short chain dehydrogenase; Provisional
Probab=66.69 E-value=25 Score=36.39 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=50.6
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. |..|..++++|.+.+. .|+++ .++++..+++.+.+... .++.++.+|.++.+.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~ 68 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY-------------KVAIT-ARDQKELEEAAAELNNK---GNVLGLAADVRDEAD 68 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------------EEEEe-eCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHH
Confidence 467888986 6799999999987543 55555 66666665554433211 345566899999988
Q ss_pred HHhcCc------cccCeEEEec
Q 003003 373 YERAAA------NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i------~~A~aVIIl~ 388 (858)
++++-- ...+.+|..+
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~a 90 (237)
T PRK07326 69 VQRAVDAIVAAFGGLDVLIANA 90 (237)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 765432 2567555443
No 118
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=66.52 E-value=29 Score=36.18 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=50.1
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. |..|..++++|.+.+. .|+++ .++.+..+...+..... +.++.++.+|..+.+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~ 69 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-------------EVIVV-DICGDDAAATAELVEAA--GGKARARQVDVRDRAA 69 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence 456888885 5689999999987644 45555 55554444433322111 3346667899999998
Q ss_pred HHhcCc------cccCeEEEec
Q 003003 373 YERAAA------NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i------~~A~aVIIl~ 388 (858)
++++-- ...+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~~~d~vi~~a 91 (251)
T PRK12826 70 LKAAVAAGVEDFGRLDILVANA 91 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 887632 2467655544
No 119
>PRK06139 short chain dehydrogenase; Provisional
Probab=66.45 E-value=22 Score=39.77 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=48.0
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|.|.+ -.|..++++|.+.+. .|++ ..++++.++++.++... .+.++.++.+|.++.+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-------------~Vvl-~~R~~~~l~~~~~~~~~--~g~~~~~~~~Dv~d~~ 69 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-------------RLVL-AARDEEALQAVAEECRA--LGAEVLVVPTDVTDAD 69 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHHHHh--cCCcEEEEEeeCCCHH
Confidence 35688999985 589999999988654 5554 47777777665543311 1456666788999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 70 ~v~~~ 74 (330)
T PRK06139 70 QVKAL 74 (330)
T ss_pred HHHHH
Confidence 88775
No 120
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=66.10 E-value=28 Score=36.82 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|. |..|..++++|.+.+. .|+++ +++++..+.+...... .+.++.+..+|.++++.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~i~~--~~~~~~~~~~Dl~d~~~ 75 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-------------RVVLS-ARKAEELEEAAAHLEA--LGIDALWIAADVADEAD 75 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHH
Confidence 467999986 4589999999987544 45544 6666665554432211 13456667899999988
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 76 i~~~ 79 (259)
T PRK08213 76 IERL 79 (259)
T ss_pred HHHH
Confidence 8653
No 121
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=66.04 E-value=27 Score=36.86 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=44.8
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..++++|.+.+. .|+++ +++.+..+++.+.. +.++.++.+|.++++.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 66 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA-------------RVVIA-DIKPARARLAALEI-----GPAAIAVSLDVTRQDS 66 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-cCCHHHHHHHHHHh-----CCceEEEEccCCCHHH
Confidence 456888887 5589999999988654 45544 77776666655432 2345666889888888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 67 ~~~~ 70 (257)
T PRK07067 67 IDRI 70 (257)
T ss_pred HHHH
Confidence 7765
No 122
>CHL00194 ycf39 Ycf39; Provisional
Probab=65.97 E-value=21 Score=39.35 Aligned_cols=71 Identities=18% Similarity=0.095 Sum_probs=47.6
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
+|+|+|. |-.|..++++|.+.++ .|+.+ .++.+..+.+.. .+.+ ++.||.+++++|.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-------------~V~~l-~R~~~~~~~l~~------~~v~--~v~~Dl~d~~~l~ 59 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-------------QVRCL-VRNLRKASFLKE------WGAE--LVYGDLSLPETLP 59 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-------------eEEEE-EcChHHhhhHhh------cCCE--EEECCCCCHHHHH
Confidence 5888885 8899999999998655 56655 444332222211 1343 4589999999998
Q ss_pred hcCccccCeEEEecC
Q 003003 375 RAAANKARAIIILPT 389 (858)
Q Consensus 375 rA~i~~A~aVIIl~~ 389 (858)
++ ++.++.|+-++.
T Consensus 60 ~a-l~g~d~Vi~~~~ 73 (317)
T CHL00194 60 PS-FKGVTAIIDAST 73 (317)
T ss_pred HH-HCCCCEEEECCC
Confidence 76 567887766543
No 123
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.88 E-value=29 Score=36.22 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=51.4
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. |..|..++++|.+.+. .|+++ .++++..+.+...... +.++.+..+|.++++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~ 67 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA-------------RVVVT-DRNEEAAERVAAEILA---GGRAIAVAADVSDEAD 67 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHH
Confidence 347888887 5699999999987654 55554 6766655555443311 3456677899999999
Q ss_pred HHhcCc------cccCeEEEec
Q 003003 373 YERAAA------NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i------~~A~aVIIl~ 388 (858)
++++-- ...+.+|-.+
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a 89 (251)
T PRK07231 68 VEAAVAAALERFGSVDILVNNA 89 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 887522 2457555544
No 124
>PRK06138 short chain dehydrogenase; Provisional
Probab=65.80 E-value=29 Score=36.23 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=50.8
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+ ..|..++++|.+.+. .|+++ .++.+..+....... .+.++.+..+|.++++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~ 67 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA-------------RVVVA-DRDAEAAERVAAAIA---AGGRAFARQGDVGSAEA 67 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-------------eEEEe-cCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHH
Confidence 4588999885 589999999987544 45554 566555554443221 13456677899999998
Q ss_pred HHhcCc------cccCeEEEec
Q 003003 373 YERAAA------NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i------~~A~aVIIl~ 388 (858)
++++-- .+.+.+|-.+
T Consensus 68 ~~~~~~~i~~~~~~id~vi~~a 89 (252)
T PRK06138 68 VEALVDFVAARWGRLDVLVNNA 89 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 876521 2456555444
No 125
>PRK07576 short chain dehydrogenase; Provisional
Probab=65.73 E-value=27 Score=37.28 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=45.1
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|.|.+ ..|..++++|...+. .|+++ ++++++.+...+..... +.++.++.+|.++++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~ 71 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-------------NVAVA-SRSQEKVDAAVAQLQQA--GPEGLGVSADVRDYA 71 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHHh--CCceEEEECCCCCHH
Confidence 35689999885 589999999987544 45544 67666655543332111 234556689999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 72 ~i~~~ 76 (264)
T PRK07576 72 AVEAA 76 (264)
T ss_pred HHHHH
Confidence 87664
No 126
>PRK07831 short chain dehydrogenase; Provisional
Probab=65.55 E-value=30 Score=36.73 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=44.3
Q ss_pred CCCeEEEEcc-C-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 293 ESDHIIVCGV-N-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 293 ~~~HIII~G~-~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
....++|.|. | ..|..++++|.+.+. .|++ .+++++.+++..+.....+.+.++.++.+|.+++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-------------~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-------------RVVI-SDIHERRLGETADELAAELGLGRVEAVVCDVTSE 81 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-------------EEEE-EeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCH
Confidence 4567899997 4 599999999987654 4554 4666655555433221111123465667888888
Q ss_pred HHHHhc
Q 003003 371 KSYERA 376 (858)
Q Consensus 371 e~L~rA 376 (858)
+.++++
T Consensus 82 ~~~~~~ 87 (262)
T PRK07831 82 AQVDAL 87 (262)
T ss_pred HHHHHH
Confidence 776654
No 127
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=65.54 E-value=28 Score=36.36 Aligned_cols=67 Identities=3% Similarity=-0.126 Sum_probs=43.3
Q ss_pred CeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..++|.|.+. .|..++++|.+.+. .++++..++++..+.+....... +.++.++.+|.++.+.+
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~ 67 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW-------------SVGINYARDAAAAEETADAVRAA--GGRACVVAGDVANEADV 67 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEeccCCHHHH
Confidence 4788998764 89999999987654 45555455555444433322111 34566778999888877
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 68 ~~~ 70 (248)
T PRK06947 68 IAM 70 (248)
T ss_pred HHH
Confidence 654
No 128
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=65.27 E-value=38 Score=31.23 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=52.8
Q ss_pred CcceeehhhHHHHHHHHHhhcccHHHHHHHHHcc-C-------------------CCeEEEEeccccccCCCCCCHHHHH
Q 003003 747 SLTYIAAEEIMSLVTAQVVENNELNEVWKDILNA-E-------------------GDEIYVKDISLYMKEGENPSFFELS 806 (858)
Q Consensus 747 ~~d~I~S~~iis~vlAq~a~~~~l~~v~~~Ll~~-e-------------------G~ei~~~~~~~~~~~~~~~sF~~L~ 806 (858)
++++|.-+++--.+|||...-|++..+.-.|+.. . ++|||-...+... .+++|.++.
T Consensus 10 ~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f---~G~~F~~~~ 86 (101)
T PF03493_consen 10 ADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAF---VGMTFTEAA 86 (101)
T ss_dssp T-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGG---TTSBHHHHH
T ss_pred CceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhh---CCCcHHHHH
Confidence 3488889999999999999999999998877652 1 3468877776533 689999999
Q ss_pred HHHH-hcCcEEEEEE
Q 003003 807 ERAH-LRREVAIGYV 820 (858)
Q Consensus 807 ~~a~-~~g~ilIG~~ 820 (858)
.... +.|.++||+.
T Consensus 87 ~~~~~~~~viLigIe 101 (101)
T PF03493_consen 87 RLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHS--EEEEEE
T ss_pred HHHHHHcCcEEEEeC
Confidence 8774 6899999984
No 129
>PRK08267 short chain dehydrogenase; Provisional
Probab=65.16 E-value=23 Score=37.47 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=45.8
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.+++|+|.+ ..|..++++|.+.+. .|+++ +++++.++++.+... +.++.++++|.++.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v 63 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-------------RVGAY-DINEAGLAALAAELG----AGNAWTGALDVTDRAAW 63 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHhc----CCceEEEEecCCCHHHH
Confidence 368999875 489999999987544 45554 677777776654331 34566778999999888
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 64 ~~~ 66 (260)
T PRK08267 64 DAA 66 (260)
T ss_pred HHH
Confidence 765
No 130
>PRK12829 short chain dehydrogenase; Provisional
Probab=64.97 E-value=27 Score=36.78 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=52.2
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
+..+++|.|.+ ..|..++++|.+.+. .|+++ .++++..+.+.+.. . +.++.++.+|.++++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~-------------~V~~~-~r~~~~~~~~~~~~-~---~~~~~~~~~D~~~~~ 71 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA-------------RVHVC-DVSEAALAATAARL-P---GAKVTATVADVADPA 71 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHH-h---cCceEEEEccCCCHH
Confidence 46789999885 589999999987654 55554 67666666554432 1 224566789999999
Q ss_pred HHHhcCc------cccCeEEEecC
Q 003003 372 SYERAAA------NKARAIIILPT 389 (858)
Q Consensus 372 ~L~rA~i------~~A~aVIIl~~ 389 (858)
.+.++-- ...+.||-.+.
T Consensus 72 ~~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 72 QVERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 8776421 35676655443
No 131
>PRK07890 short chain dehydrogenase; Provisional
Probab=64.93 E-value=29 Score=36.52 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=44.7
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ -.|..++++|.+.+. .|+++ +++++..+++....... +.++.++..|.++++.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 68 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA-------------DVVLA-ARTAERLDEVAAEIDDL--GRRALAVPTDITDEDQ 68 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHHh--CCceEEEecCCCCHHH
Confidence 4578888875 599999999987544 55554 66666666554433111 3446667889988888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 69 ~~~~ 72 (258)
T PRK07890 69 CANL 72 (258)
T ss_pred HHHH
Confidence 7653
No 132
>PRK05867 short chain dehydrogenase; Provisional
Probab=64.79 E-value=31 Score=36.34 Aligned_cols=67 Identities=9% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|++ .+++++..+++.++.... +.++.+..+|.++++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 72 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-------------QVAI-AARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQ 72 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHH
Confidence 4568888885 589999999987654 4554 477777676665443211 3456667889999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 73 ~~~~ 76 (253)
T PRK05867 73 VTSM 76 (253)
T ss_pred HHHH
Confidence 7664
No 133
>PRK12937 short chain dehydrogenase; Provisional
Probab=64.70 E-value=32 Score=35.83 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=49.5
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|. +..|..++++|.+.+. .++++...++...+++.+.... .+.++.++.+|.++.+.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~ 69 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF-------------AVAVNYAGSAAAADELVAEIEA--AGGRAIAVQADVADAAA 69 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEecCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHH
Confidence 468999987 5689999999988655 4555544344333433332211 14457777899999888
Q ss_pred HHhcCc------cccCeEEEec
Q 003003 373 YERAAA------NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i------~~A~aVIIl~ 388 (858)
++++=- .+.+.+|-.+
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~a 91 (245)
T PRK12937 70 VTRLFDAAETAFGRIDVLVNNA 91 (245)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 776522 2456555443
No 134
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=64.65 E-value=32 Score=35.62 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=49.7
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..+++.|.+.+. .|+++..++.+..+...+..... +.++..+.+|.++.+.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~ 69 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA-------------NVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAES 69 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 4568888874 689999999988654 56566555443344333322111 3456667899999988
Q ss_pred HHhcCc------cccCeEEEec
Q 003003 373 YERAAA------NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i------~~A~aVIIl~ 388 (858)
+.++-- ...+.+|..+
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~a 91 (248)
T PRK05557 70 VERAVDEAKAEFGGVDILVNNA 91 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 877522 2456655544
No 135
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=64.51 E-value=12 Score=37.31 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=42.5
Q ss_pred EEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 599 ILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 599 vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
|+|+|. |..+..++++|.+ .|.+|+.+...+ ++.+ . ...++++.||..|.+.+.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~---~~~~V~~~~R~~--~~~~--------~--~~~~~~~~~d~~d~~~~~~a 57 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLR---RGHEVTALVRSP--SKAE--------D--SPGVEIIQGDLFDPDSVKAA 57 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTSEEEEEESSG--GGHH--------H--CTTEEEEESCTTCHHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHH---CCCEEEEEecCc--hhcc--------c--ccccccceeeehhhhhhhhh
Confidence 689997 8899999999964 457888888632 2211 1 34566799999999999987
No 136
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=64.50 E-value=25 Score=36.97 Aligned_cols=74 Identities=7% Similarity=0.135 Sum_probs=48.9
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
.++|.|. |..|..++++|.+.+. .|+++ +++++.++.+.+.. +.++.+..+|.++.+.++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~ 62 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-------------KVIAT-GRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIE 62 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHH
Confidence 4788887 5589999999987654 55554 66666666654432 234666789999998876
Q ss_pred hcC------ccccCeEEEec
Q 003003 375 RAA------ANKARAIIILP 388 (858)
Q Consensus 375 rA~------i~~A~aVIIl~ 388 (858)
++= ....+.+|..+
T Consensus 63 ~~~~~~~~~~~~id~vi~~a 82 (248)
T PRK10538 63 EMLASLPAEWRNIDVLVNNA 82 (248)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 641 12456555443
No 137
>PRK09242 tropinone reductase; Provisional
Probab=64.44 E-value=33 Score=36.23 Aligned_cols=69 Identities=6% Similarity=0.150 Sum_probs=45.5
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..++++|.+.+. .|+++ .++.+..+++.+++.....+.++.++.+|.++++.
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~ 74 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-------------DVLIV-ARDADALAQARDELAEEFPEREVHGLAADVSDDED 74 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHH
Confidence 346778887 4689999999987654 56655 66666666655443222224567777899998887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 75 ~~~~ 78 (257)
T PRK09242 75 RRAI 78 (257)
T ss_pred HHHH
Confidence 6553
No 138
>PRK08339 short chain dehydrogenase; Provisional
Probab=64.38 E-value=28 Score=37.18 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=45.4
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|++ .+++++..+++.++.... .+.++.++.+|.++++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-------------~V~~-~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~ 72 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-------------DVIL-LSRNEENLKKAREKIKSE-SNVDVSYIVADLTKRED 72 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHH
Confidence 3467888886 599999999998654 4554 477776666655433111 13456667888888887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 73 i~~~ 76 (263)
T PRK08339 73 LERT 76 (263)
T ss_pred HHHH
Confidence 7665
No 139
>PRK07774 short chain dehydrogenase; Provisional
Probab=64.29 E-value=32 Score=35.95 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=44.2
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
+...++|.|. |..|..++++|.+.+. .|+++ +++++..+.+.+..... +.++.+..+|.++.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-------------~vi~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~ 68 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-------------SVVVA-DINAEGAERVAKQIVAD--GGTAIAVQVDVSDPD 68 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHH
Confidence 3567999998 6699999999988654 56655 66555444443322111 223455678999888
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 69 ~~~~~ 73 (250)
T PRK07774 69 SAKAM 73 (250)
T ss_pred HHHHH
Confidence 77653
No 140
>PRK05650 short chain dehydrogenase; Provisional
Probab=64.11 E-value=27 Score=37.33 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=44.0
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
+++|.|. |..|..++++|.+.+. .|+++ +++.+..+.+....... +.++.++.+|.++++.++
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~ 65 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-------------RLALA-DVNEEGGEETLKLLREA--GGDGFYQRCDVRDYSQLT 65 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHH
Confidence 6888887 4689999999987544 45544 66666666544433111 345666789999988876
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 66 ~~ 67 (270)
T PRK05650 66 AL 67 (270)
T ss_pred HH
Confidence 64
No 141
>CHL00194 ycf39 Ycf39; Provisional
Probab=63.92 E-value=40 Score=37.20 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=42.0
Q ss_pred cEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 598 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 598 ~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+|+|.|. |..|..++++|.+ .|.+|+.+...+ ++... +....+.++.||.+|.+.|.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~---~g~~V~~l~R~~--~~~~~--------l~~~~v~~v~~Dl~d~~~l~~a 61 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALD---EGYQVRCLVRNL--RKASF--------LKEWGAELVYGDLSLPETLPPS 61 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHH---CCCeEEEEEcCh--HHhhh--------HhhcCCEEEECCCCCHHHHHHH
Confidence 5899996 6789999999964 477888887532 11111 1122466799999999999886
No 142
>PRK06197 short chain dehydrogenase; Provisional
Probab=63.87 E-value=30 Score=37.82 Aligned_cols=70 Identities=17% Similarity=0.052 Sum_probs=44.7
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
....++|.|.+ -.|..++++|.+.+. .|+++ .++++..++..+.......+.++.+..+|.++.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-------------~vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-------------HVVLA-VRNLDKGKAAAARITAATPGADVTLQELDLTSLA 80 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHH
Confidence 45678888875 599999999998654 56555 5555444443332211111345666788999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 81 ~v~~~ 85 (306)
T PRK06197 81 SVRAA 85 (306)
T ss_pred HHHHH
Confidence 87765
No 143
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.74 E-value=31 Score=36.33 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=45.8
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. |..|..++++|.+.+. .|+++ .++++..+++.+.... .+.++.++.+|.++.+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~ 70 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-------------AVAIA-DLNQDGANAVADEINK--AGGKAIGVAMDVTNEDA 70 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------eEEEE-eCChHHHHHHHHHHHh--cCceEEEEECCCCCHHH
Confidence 457889988 5689999999987654 45554 6666555554443311 14456677899999988
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 71 ~~~~ 74 (262)
T PRK13394 71 VNAG 74 (262)
T ss_pred HHHH
Confidence 8765
No 144
>PRK06101 short chain dehydrogenase; Provisional
Probab=63.44 E-value=22 Score=37.27 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=42.6
Q ss_pred eEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
-++|.|.+ ..|..++++|.+.+. .|+++ +++++.++++.+. +.++.++.+|.++++.++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~ 62 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGW-------------QVIAC-GRNQSVLDELHTQ------SANIFTLAFDVTDHPGTK 62 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCC-------------EEEEE-ECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHH
Confidence 47888874 589999999987544 55554 7777666665432 123556689999998887
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 63 ~~ 64 (240)
T PRK06101 63 AA 64 (240)
T ss_pred HH
Confidence 75
No 145
>PRK07806 short chain dehydrogenase; Provisional
Probab=63.11 E-value=38 Score=35.37 Aligned_cols=68 Identities=13% Similarity=0.031 Sum_probs=42.8
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|+|. +-.|..++++|...+. .|+++.....+..+.+....... +.++.+..+|.+++++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~-------------~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 70 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA-------------HVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEES 70 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC-------------EEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 356889997 5699999999987654 45555333333334333222111 3446667899999988
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 71 ~~~~ 74 (248)
T PRK07806 71 VAAL 74 (248)
T ss_pred HHHH
Confidence 7654
No 146
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.64 E-value=36 Score=35.57 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=42.8
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..+++.|.+.+. .|+++..++++..+.+.... +.++.++.+|.++++.
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~-------------~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 66 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA-------------RVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQ 66 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-------------eEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHH
Confidence 3467888865 689999999987654 46655444555455544322 2346667889888887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 67 ~~~~ 70 (253)
T PRK08642 67 VQAM 70 (253)
T ss_pred HHHH
Confidence 7665
No 147
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=62.46 E-value=38 Score=35.33 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=43.1
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.-++|.|. +..|..++++|.+.+. .+++....+....++..++... .+.++.++.+|.++.+.+
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~-------------~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~ 68 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF-------------KVVAGCGPNSPRRVKWLEDQKA--LGFDFIASEGNVGDWDST 68 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC-------------EEEEEcCCChHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHH
Confidence 35688887 5689999999988654 4565444443333332222211 145677778999999888
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 69 ~~~ 71 (246)
T PRK12938 69 KAA 71 (246)
T ss_pred HHH
Confidence 776
No 148
>PRK07478 short chain dehydrogenase; Provisional
Probab=62.39 E-value=34 Score=36.06 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=45.2
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ .++++..+++.++... . +.++.++.+|.++++.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~ 69 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-------------KVVVG-ARRQAELDQLVAEIRA-E-GGEAVALAGDVRDEAY 69 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh-c-CCcEEEEEcCCCCHHH
Confidence 3468888875 489999999988654 55555 6666666665443311 1 3456667889999887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 70 ~~~~ 73 (254)
T PRK07478 70 AKAL 73 (254)
T ss_pred HHHH
Confidence 7665
No 149
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=61.98 E-value=34 Score=35.32 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=50.1
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. |..|..++++|.+.+. .|+++ .++++..+.+.+.... .+.++.++.+|.++++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 68 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-------------KVVIY-DSNEEAAEALAAELRA--AGGEARVLVFDVSDEAA 68 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCChhHHHHHHHHHHh--cCCceEEEEccCCCHHH
Confidence 357899987 4689999999987654 45544 6666555544432211 14456677899999988
Q ss_pred HHhcCc------cccCeEEEec
Q 003003 373 YERAAA------NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i------~~A~aVIIl~ 388 (858)
+.++-- ...+.+|-.+
T Consensus 69 ~~~~~~~~~~~~~~id~vi~~a 90 (246)
T PRK05653 69 VRALIEAAVEAFGALDILVNNA 90 (246)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 766522 2347655544
No 150
>PRK09135 pteridine reductase; Provisional
Probab=61.59 E-value=43 Score=34.77 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=43.5
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+ -.|..++++|.+.+. .|+++..+.++..+.+...+ .+..+..+.+..+|.++.+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~-------------~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~ 71 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY-------------RVAIHYHRSAAEADALAAEL-NALRPGSAAALQADLLDPDA 71 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEcCCCHHHHHHHHHHH-HhhcCCceEEEEcCCCCHHH
Confidence 4679999975 589999999987654 46655433343344333221 11112235566899999888
Q ss_pred HHhcC
Q 003003 373 YERAA 377 (858)
Q Consensus 373 L~rA~ 377 (858)
+.++-
T Consensus 72 ~~~~~ 76 (249)
T PRK09135 72 LPELV 76 (249)
T ss_pred HHHHH
Confidence 77653
No 151
>PRK06482 short chain dehydrogenase; Provisional
Probab=61.24 E-value=33 Score=36.66 Aligned_cols=76 Identities=8% Similarity=0.039 Sum_probs=50.5
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..++|.|. |-.|..++++|.+.+. .|+++ .++++.++.+.+.. +.++.++.+|.++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-------------~v~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~ 63 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-------------RVAAT-VRRPDALDDLKARY-----GDRLWVLQLDVTDSAAV 63 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHhc-----cCceEEEEccCCCHHHH
Confidence 56899987 5699999999987654 45544 66666666654432 23455668999999988
Q ss_pred HhcC------ccccCeEEEecC
Q 003003 374 ERAA------ANKARAIIILPT 389 (858)
Q Consensus 374 ~rA~------i~~A~aVIIl~~ 389 (858)
+++- ....+.||-++.
T Consensus 64 ~~~~~~~~~~~~~id~vi~~ag 85 (276)
T PRK06482 64 RAVVDRAFAALGRIDVVVSNAG 85 (276)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 7652 234576555443
No 152
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=61.23 E-value=37 Score=41.01 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=53.0
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhcc---c----cCCceEEEec
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAK---D----LNHIDILSKS 364 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~---d----~~~~~Vv~~~ 364 (858)
+...++|.|. |..|..++++|.+.+. .|+++ .++.+..+.+.+++.. + ....++.++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-------------~Vval-~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~ 144 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-------------RVRAG-VRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVE 144 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHhhhhccccccccccCceEEEE
Confidence 3457888887 6799999999988654 56655 5665555544332100 0 0012466678
Q ss_pred CCCCCHHHHHhcCccccCeEEEecC
Q 003003 365 CSLTLTKSYERAAANKARAIIILPT 389 (858)
Q Consensus 365 Gd~~~~e~L~rA~i~~A~aVIIl~~ 389 (858)
||.++.++++++ +..++.||..+.
T Consensus 145 gDLtD~esI~~a-LggiDiVVn~AG 168 (576)
T PLN03209 145 CDLEKPDQIGPA-LGNASVVICCIG 168 (576)
T ss_pred ecCCCHHHHHHH-hcCCCEEEEccc
Confidence 999999998764 567887666543
No 153
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=61.10 E-value=36 Score=35.71 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=43.4
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
.++|.|. +..|..++++|.+.+. .|+++ +++++..+++.+.... .+.++..+.+|.++++.++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~i~ 65 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-------------AVAVA-DLNEETAKETAKEINQ--AGGKAVAYKLDVSDKDQVF 65 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHH
Confidence 5788886 5689999999987654 56655 5555555544433211 1445666789999988877
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 66 ~~ 67 (254)
T TIGR02415 66 SA 67 (254)
T ss_pred HH
Confidence 65
No 154
>PRK06181 short chain dehydrogenase; Provisional
Probab=60.73 E-value=35 Score=36.07 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=43.7
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
+.++|.|. |..|..++++|.+.+. .|+++ +++++..+.+.+.+... +.++.+..+|.++.+.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-------------~Vi~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~ 65 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-------------QLVLA-ARNETRLASLAQELADH--GGEALVVPTDVSDAEAC 65 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHH
Confidence 36889988 5689999999986543 45554 66665555544433111 33566668899988877
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 66 ~~~ 68 (263)
T PRK06181 66 ERL 68 (263)
T ss_pred HHH
Confidence 664
No 155
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=60.70 E-value=21 Score=39.33 Aligned_cols=63 Identities=14% Similarity=0.258 Sum_probs=41.7
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh-HHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~-~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
-.-+||||||++|..-+..|...+ ..|++.+.|+ ..++...+ |++|+.
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~g--------------~~VivTEiDPI~ALQAaMe-------G~~V~t---------- 262 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGFG--------------ARVIVTEIDPICALQAAME-------GYEVTT---------- 262 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhcC--------------cEEEEeccCchHHHHHHhh-------ccEeee----------
Confidence 556789999999999999998653 3566778765 45555444 677763
Q ss_pred HHhcCccccCeEEEecC
Q 003003 373 YERAAANKARAIIILPT 389 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~ 389 (858)
|++| +++++ |++.++
T Consensus 263 m~ea-~~e~d-ifVTtT 277 (434)
T KOG1370|consen 263 LEEA-IREVD-IFVTTT 277 (434)
T ss_pred HHHh-hhcCC-EEEEcc
Confidence 3333 56667 555444
No 156
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=59.76 E-value=16 Score=43.34 Aligned_cols=56 Identities=18% Similarity=0.452 Sum_probs=42.2
Q ss_pred CCCChhHHHHHhheeeeeccccccc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003003 221 ETQSLEDCLWEAWACLISSSTHLKQ-RTRVERVIGFILAIWGILFYSRLLSTMTEQF 276 (858)
Q Consensus 221 ~~~s~~da~w~a~~~vt~sg~g~gd-~T~~gRl~svvl~l~Gi~~fa~li~~it~~l 276 (858)
...++..|.|++|-++..+|.|.|. .+...|+++++-.-+.+++.|...+-++..+
T Consensus 610 ~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 610 DALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 3468999999999999999887663 6677999998877666666666665555543
No 157
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=59.73 E-value=39 Score=35.16 Aligned_cols=66 Identities=6% Similarity=-0.077 Sum_probs=42.4
Q ss_pred eEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
-++|.|.+ -.|..++++|.+.+. .|+++..++++..++....... .+.++..+.+|.++++.++
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~i~ 67 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGY-------------TVAVNYQQNLHAAQEVVNLITQ--AGGKAFVLQADISDENQVV 67 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEeCCChHHHHHHHHHHHh--CCCeEEEEEccCCCHHHHH
Confidence 36888874 599999999987654 4554445555544444332211 1344666789999998877
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 68 ~~ 69 (247)
T PRK09730 68 AM 69 (247)
T ss_pred HH
Confidence 64
No 158
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=59.68 E-value=49 Score=38.02 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=48.2
Q ss_pred CcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhcc
Q 003003 597 ERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTI 670 (858)
Q Consensus 597 ~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~ 670 (858)
.++||+|-|..+..++..|..... .+|++.+..+ +.+..+.. ....++..+.=|+.|.+.|.++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdRs~--~~~~~i~~-----~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIADRSK--EKCARIAE-----LIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEEeCCH--HHHHHHHh-----hccccceeEEecccChHHHHHHH
Confidence 579999999999999999965432 7899888643 45554432 11226677889999999999983
No 159
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=59.66 E-value=19 Score=39.66 Aligned_cols=76 Identities=17% Similarity=0.322 Sum_probs=46.6
Q ss_pred EEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccC--Cc--eEEEecCCCCCHH
Q 003003 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLN--HI--DILSKSCSLTLTK 371 (858)
Q Consensus 297 III~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~--~~--~Vv~~~Gd~~~~e 371 (858)
|+|.|. |..|..+++||..++. ..++++ |+++..+-.+.+++....+ +. .+.++.||-.|.+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p------------~~lil~-d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~ 67 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP------------KKLILF-DRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKE 67 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-------------SEEEEE-ES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC------------CeEEEe-CCChhHHHHHHHHHhhcccccCcccccCceeecccCHH
Confidence 567766 6799999999998754 256655 8888777776665521111 23 3456689999999
Q ss_pred HHHhcC-ccccCeEE
Q 003003 372 SYERAA-ANKARAII 385 (858)
Q Consensus 372 ~L~rA~-i~~A~aVI 385 (858)
.|.++= -.+-+.|+
T Consensus 68 ~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 68 RLNRIFEEYKPDIVF 82 (293)
T ss_dssp HHHHHTT--T-SEEE
T ss_pred HHHHHHhhcCCCEEE
Confidence 888883 23556433
No 160
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=59.63 E-value=16 Score=36.77 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=39.1
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
....|.|+|||.+|..-...|+..+. +|+|-...+....++..+ + |..+. +
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~-------------~V~Vglr~~s~s~~~A~~----~--Gf~v~----------~ 53 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV-------------NVIVGLREGSASWEKAKA----D--GFEVM----------S 53 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC--------------EEEEEE-TTCHHHHHHHH----T--T-ECC----------E
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC-------------CEEEEecCCCcCHHHHHH----C--CCeec----------c
Confidence 35678999999999999999988544 444432333335555443 1 55543 3
Q ss_pred HHhcCccccCeEEEecC
Q 003003 373 YERAAANKARAIIILPT 389 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~ 389 (858)
..+| +++|+.|++|.+
T Consensus 54 ~~eA-v~~aDvV~~L~P 69 (165)
T PF07991_consen 54 VAEA-VKKADVVMLLLP 69 (165)
T ss_dssp HHHH-HHC-SEEEE-S-
T ss_pred HHHH-HhhCCEEEEeCC
Confidence 3444 778998888776
No 161
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=59.35 E-value=45 Score=34.75 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=44.6
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..++++|.+.+. .|+++ +++.+..+++.+..... +.++.+..+|.++.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~ 66 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-------------KVAVF-DLNREAAEKVAADIRAK--GGNAQAFACDITDRDS 66 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEe-cCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHH
Confidence 457888886 4599999999988654 45554 66665555544332111 3346667899999988
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 67 ~~~~ 70 (250)
T TIGR03206 67 VDTA 70 (250)
T ss_pred HHHH
Confidence 8775
No 162
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=59.08 E-value=69 Score=34.85 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=42.3
Q ss_pred cEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 598 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 598 ~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+++|.|. |-.+..+++.|.+ .|.+|..++..+. ... .+....++++.||.+|.+.|+++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~---~g~~V~~~~r~~~--~~~--------~~~~~~~~~~~~D~~~~~~l~~~ 61 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLE---QGEEVRVLVRPTS--DRR--------NLEGLDVEIVEGDLRDPASLRKA 61 (328)
T ss_pred eEEEECCccchhHHHHHHHHH---CCCEEEEEEecCc--ccc--------ccccCCceEEEeeCCCHHHHHHH
Confidence 5889987 6789999999964 4677888875322 111 12233577899999999999876
No 163
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=58.62 E-value=44 Score=34.91 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=40.6
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh-HHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR-KQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~-~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ ++++ .+..+..+.. +.++.++.+|.++.+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~vi~~-~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~ 65 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA-------------DIVGA-GRSEPSETQQQVEAL-----GRRFLSLTADLSDIE 65 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-cCchHHHHHHHHHhc-----CCceEEEECCCCCHH
Confidence 3568888885 589999999998654 46655 4433 2222222211 334556688999888
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 66 ~~~~~ 70 (248)
T TIGR01832 66 AIKAL 70 (248)
T ss_pred HHHHH
Confidence 87643
No 164
>PRK12743 oxidoreductase; Provisional
Probab=58.58 E-value=47 Score=35.10 Aligned_cols=78 Identities=10% Similarity=-0.022 Sum_probs=48.9
Q ss_pred eEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
-++|.|.+ ..|..++++|.+.+. .|+++..++++..+.+.+.... .+.++.++.+|.++++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~-------------~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~ 68 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGF-------------DIGITWHSDEEGAKETAEEVRS--HGVRAEIRQLDLSDLPEGA 68 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-------------EEEEEeCCChHHHHHHHHHHHh--cCCceEEEEccCCCHHHHH
Confidence 47888876 489999999998655 5665545555555544433211 1445666789999988776
Q ss_pred hcCc------cccCeEEEec
Q 003003 375 RAAA------NKARAIIILP 388 (858)
Q Consensus 375 rA~i------~~A~aVIIl~ 388 (858)
++-- ...+.+|..+
T Consensus 69 ~~~~~~~~~~~~id~li~~a 88 (256)
T PRK12743 69 QALDKLIQRLGRIDVLVNNA 88 (256)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 6432 2356555443
No 165
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=58.54 E-value=37 Score=35.98 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=43.2
Q ss_pred eEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
.++|.|.+. .|..++++|.+.... .| ..|+++ .++++.++++.++......+.++.++.+|.++.+.++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~---~g------~~V~~~-~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~ 71 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKS---PG------SVLVLS-ARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLE 71 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhcc---CC------cEEEEE-EcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHH
Confidence 368888865 889999999862100 01 245544 6777777766544322112345666678888887766
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 72 ~~ 73 (256)
T TIGR01500 72 QL 73 (256)
T ss_pred HH
Confidence 54
No 166
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=58.32 E-value=48 Score=34.85 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=44.3
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .+++ .+++++..+++.++.... +.++..+.+|.++++.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-------------~vvl-~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~ 72 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-------------EIII-NDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQE 72 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-------------EEEE-EcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHH
Confidence 4568888875 589999999987544 4554 477666665554433111 3445566788888887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 73 ~~~~ 76 (254)
T PRK08085 73 VEAA 76 (254)
T ss_pred HHHH
Confidence 7665
No 167
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=58.05 E-value=38 Score=35.90 Aligned_cols=64 Identities=9% Similarity=0.167 Sum_probs=42.6
Q ss_pred eEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
+++|.|.+. .|..++++|.+.+. .|+++ +++++.++++.++.... + ++.+..+|.++++.++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~~--~-~~~~~~~Dv~d~~~~~ 64 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-------------RVVIS-SRNEENLEKALKELKEY--G-EVYAVKADLSDKDDLK 64 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhc--C-CceEEEcCCCCHHHHH
Confidence 588998865 89999999988654 45544 77766666554433111 2 3455678888888776
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 65 ~~ 66 (259)
T PRK08340 65 NL 66 (259)
T ss_pred HH
Confidence 54
No 168
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=58.05 E-value=40 Score=35.74 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=43.1
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ -.|..++++|.+.+. .|+++ +++.+.++++.+.. +.++.++.+|.++.+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~ 65 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA-------------RVAVL-DKSAAGLQELEAAH-----GDAVVGVEGDVRSLDD 65 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHhhc-----CCceEEEEeccCCHHH
Confidence 3567788875 489999999988654 55554 77666666654322 3345566788888776
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
..++
T Consensus 66 ~~~~ 69 (262)
T TIGR03325 66 HKEA 69 (262)
T ss_pred HHHH
Confidence 6554
No 169
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=57.84 E-value=49 Score=35.02 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+. .|..++++|.+.+. .+++....+++..+.+.++.... +.++.+..+|.++.+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~-------------~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~ 71 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA-------------KVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVESD 71 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHHH
Confidence 45788888764 89999999998654 46655444444444433322111 3455566788888877
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 72 i~~~ 75 (261)
T PRK08936 72 VVNL 75 (261)
T ss_pred HHHH
Confidence 6654
No 170
>PRK07102 short chain dehydrogenase; Provisional
Probab=57.69 E-value=41 Score=35.10 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=43.6
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
+++|.|. +..|..++++|.+.+. .|+++ +++++..+.+.++.. ...+.++.++.+|.++++.++
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~ 67 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGA-------------RLYLA-ARDVERLERLADDLR-ARGAVAVSTHELDILDTASHA 67 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCC-------------EEEEE-eCCHHHHHHHHHHHH-HhcCCeEEEEecCCCChHHHH
Confidence 6888886 5689999999997544 45554 666655554433221 111345667789999998877
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 68 ~~ 69 (243)
T PRK07102 68 AF 69 (243)
T ss_pred HH
Confidence 65
No 171
>PRK05717 oxidoreductase; Validated
Probab=57.61 E-value=49 Score=34.87 Aligned_cols=65 Identities=15% Similarity=0.061 Sum_probs=43.4
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
+...++|.|. +..|..++++|.+.+. .|+++ +++++..+++.+.. +.++.++.+|.++.+
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-------------~v~~~-~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~ 69 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-------------QVVLA-DLDRERGSKVAKAL-----GENAWFIAMDVADEA 69 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-------------EEEEE-cCCHHHHHHHHHHc-----CCceEEEEccCCCHH
Confidence 4456888887 5699999999987654 56655 65554444443322 234666789999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 70 ~~~~~ 74 (255)
T PRK05717 70 QVAAG 74 (255)
T ss_pred HHHHH
Confidence 77554
No 172
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=57.51 E-value=46 Score=35.62 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=45.1
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ +++.+..+.+.+++.. .+.++.+..+|.++++.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~ 73 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-------------KVAIL-DRNQEKAEAVVAEIKA--AGGEALAVKADVLDKES 73 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHH
Confidence 4678888874 589999999987554 56654 6666555554443311 13456677899999887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
+.++
T Consensus 74 v~~~ 77 (278)
T PRK08277 74 LEQA 77 (278)
T ss_pred HHHH
Confidence 7654
No 173
>PRK08589 short chain dehydrogenase; Validated
Probab=57.45 E-value=41 Score=36.02 Aligned_cols=66 Identities=8% Similarity=0.089 Sum_probs=43.5
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+. .|..++++|.+.+. .|+++ +++ +..+++.++.... +.++.++.+|.++++.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-------------~vi~~-~r~-~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~ 68 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-------------YVLAV-DIA-EAVSETVDKIKSN--GGKAKAYHVDISDEQQ 68 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCc-HHHHHHHHHHHhc--CCeEEEEEeecCCHHH
Confidence 45789999864 89999999998654 45555 555 4455544433111 3356667888888877
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 69 ~~~~ 72 (272)
T PRK08589 69 VKDF 72 (272)
T ss_pred HHHH
Confidence 7653
No 174
>PRK06114 short chain dehydrogenase; Provisional
Probab=57.25 E-value=48 Score=34.95 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=42.0
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .++++.-.+++.++++.+..... +.++.++.+|.++++.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~-------------~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 72 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA-------------DVALFDLRTDDGLAETAEHIEAA--GRRAIQIAADVTSKAD 72 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEEeCCcchHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence 4567788875 489999999988654 56655333333344433322111 3345566788888887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 73 i~~~ 76 (254)
T PRK06114 73 LRAA 76 (254)
T ss_pred HHHH
Confidence 7764
No 175
>PRK07775 short chain dehydrogenase; Provisional
Probab=57.02 E-value=49 Score=35.48 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=44.2
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
.+.+++|.|. +-.|..++++|.+.+. .|+++ .++.+..+++.+..... +.++.+..+|.++.+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~ 72 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF-------------PVALG-ARRVEKCEELVDKIRAD--GGEAVAFPLDVTDPD 72 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence 3568999997 4589999999987544 45554 45444444433322111 335666789999999
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 73 ~~~~~ 77 (274)
T PRK07775 73 SVKSF 77 (274)
T ss_pred HHHHH
Confidence 88754
No 176
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=56.89 E-value=47 Score=32.16 Aligned_cols=46 Identities=13% Similarity=0.275 Sum_probs=33.4
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhh
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 351 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~ 351 (858)
...+++|+|.|..+..+++.|...+. ..+++ .+++++..+++.+.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~------------~~v~v-~~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGA------------AKIVI-VNRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------------CEEEE-EcCCHHHHHHHHHHH
Confidence 46789999999999999999987531 14554 477777777665543
No 177
>PRK07814 short chain dehydrogenase; Provisional
Probab=56.63 E-value=50 Score=35.11 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=44.8
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..-++|.|.+. .|..+++.|.+.+. .|+++ +++++..+++.+..... +.++.++.+|.++++.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 73 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA-------------DVLIA-ARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEA 73 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence 45678888764 89999999987544 56655 66666666554433111 3456666889999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 74 ~~~~ 77 (263)
T PRK07814 74 TAGL 77 (263)
T ss_pred HHHH
Confidence 8764
No 178
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=56.54 E-value=42 Score=35.65 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=22.6
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
...+++|.|+|.+|..+++.|.+.+.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~ 55 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGA 55 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 46789999999999999999987644
No 179
>PRK07035 short chain dehydrogenase; Provisional
Probab=56.51 E-value=52 Score=34.51 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=43.0
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
.+.++|.|.+. .|..++++|.+.+. .|+++ +++.+..+.+.++.... +.++.++..|.++.+.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 71 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-------------HVIVS-SRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQ 71 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHH
Confidence 45788898765 89999999987654 56655 66666666555433111 2344455678777776
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 72 ~~~~ 75 (252)
T PRK07035 72 IDAL 75 (252)
T ss_pred HHHH
Confidence 6543
No 180
>PRK09134 short chain dehydrogenase; Provisional
Probab=56.50 E-value=52 Score=34.75 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=43.7
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+. .|..++++|.+.+. .++++..++.+..+.+.+..... +.++.++.+|.++.+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~ 73 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF-------------DVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAE 73 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHH
Confidence 44688888864 89999999987654 45555444444444443322111 3456667899999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 74 ~~~~ 77 (258)
T PRK09134 74 VRAL 77 (258)
T ss_pred HHHH
Confidence 7765
No 181
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=56.44 E-value=50 Score=34.70 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=33.8
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
..-++|+|.|+++..=++-|..++. .|+|+++.-.+++..+.+
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga-------------~v~Vvs~~~~~el~~~~~ 54 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGA-------------DVTVVSPEFEPELKALIE 54 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-------------EEEEEcCCccHHHHHHHH
Confidence 5578899999999999999988655 677787766666776665
No 182
>PRK05326 potassium/proton antiporter; Reviewed
Probab=55.96 E-value=14 Score=44.55 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCCEEEEEecCCC
Q 003003 799 NPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDSLIVISELEG 852 (858)
Q Consensus 799 ~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD~LIVI~~~~~ 852 (858)
+.+.+++ ...++..+++++|+++. ++|.+ +.++++||.++++++.+.
T Consensus 429 G~~l~el---~lp~~~~i~~v~R~g~~-~~p~~---~t~L~~GD~l~l~~~~~~ 475 (562)
T PRK05326 429 GKALRDL---RLPRGALIALIIRDGKL-LVPTG---STRLKAGDVLLVLGPERD 475 (562)
T ss_pred CCCHHHc---CCCCCcEEEEEEECCEE-eCCCC---CCeECCCCEEEEEECHHH
Confidence 3444444 33468899999887765 68864 358999999999996553
No 183
>PRK08219 short chain dehydrogenase; Provisional
Probab=55.95 E-value=53 Score=33.62 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=48.8
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.+++|.|. |..|..++++|.+. . .|+++ +++++..+++.+.. . ++.++.||.++++.+
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~-------------~V~~~-~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~~ 62 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H-------------TLLLG-GRPAERLDELAAEL----P--GATPFPVDLTDPEAI 62 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C-------------CEEEE-eCCHHHHHHHHHHh----c--cceEEecCCCCHHHH
Confidence 46888887 56899999999875 4 45655 66665555544321 1 244568999999998
Q ss_pred HhcCcc--ccCeEEEecC
Q 003003 374 ERAAAN--KARAIIILPT 389 (858)
Q Consensus 374 ~rA~i~--~A~aVIIl~~ 389 (858)
+++--. ..+.+|-.+.
T Consensus 63 ~~~~~~~~~id~vi~~ag 80 (227)
T PRK08219 63 AAAVEQLGRLDVLVHNAG 80 (227)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 875432 4676655443
No 184
>PRK07825 short chain dehydrogenase; Provisional
Probab=55.71 E-value=46 Score=35.50 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=43.2
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|++ ..++++.++++.+.. + ++.++.+|.++++.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-------------~v~~-~~r~~~~~~~~~~~~-----~-~~~~~~~D~~~~~~ 64 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-------------RVAI-GDLDEALAKETAAEL-----G-LVVGGPLDVTDPAS 64 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHHh-----c-cceEEEccCCCHHH
Confidence 3478999985 589999999987544 4544 477777776654432 1 24456789999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 65 ~~~~ 68 (273)
T PRK07825 65 FAAF 68 (273)
T ss_pred HHHH
Confidence 6543
No 185
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.64 E-value=52 Score=34.52 Aligned_cols=67 Identities=7% Similarity=0.004 Sum_probs=41.9
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.-++|.|.+ -.|..++++|.+.+. .|+++...+++..+...+.... .+.++.++.+|.++++.+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~-------------~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~ 67 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF-------------DLAINDRPDDEELAATQQELRA--LGVEVIFFPADVADLSAH 67 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEEecCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHH
Confidence 347788875 589999999997654 5666643344333333322211 134566678999998887
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
.++
T Consensus 68 ~~~ 70 (256)
T PRK12745 68 EAM 70 (256)
T ss_pred HHH
Confidence 664
No 186
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=55.43 E-value=49 Score=34.96 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=41.1
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCC-hHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~-~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...++|.|.+. .|..++++|.+.+. .|+++ +++ .+..++..+.. +.++.++.+|.++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-------------~vv~~-~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~ 68 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA-------------DIVGV-GVAEAPETQAQVEAL-----GRKFHFITADLIQQK 68 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEe-cCchHHHHHHHHHHc-----CCeEEEEEeCCCCHH
Confidence 34678888765 89999999998655 56655 443 22222222211 445666788988888
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
+.+++
T Consensus 69 ~~~~~ 73 (251)
T PRK12481 69 DIDSI 73 (251)
T ss_pred HHHHH
Confidence 87665
No 187
>PRK06437 hypothetical protein; Provisional
Probab=55.42 E-value=28 Score=29.61 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEee
Q 003003 483 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAP 529 (858)
Q Consensus 483 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~ 529 (858)
.|.|..|+...+. ..--+++.+||++. | .++.|++||++-++-.
T Consensus 19 ~~~tv~dLL~~Lgi~~~~vaV~vNg~iv--~-~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 19 HELTVNDIIKDLGLDEEEYVVIVNGSPV--L-EDHNVKKEDDVLILEV 63 (67)
T ss_pred CCCcHHHHHHHcCCCCccEEEEECCEEC--C-CceEcCCCCEEEEEec
Confidence 4578998876543 33345677899953 5 8899999999987643
No 188
>PRK06180 short chain dehydrogenase; Provisional
Probab=55.25 E-value=45 Score=35.79 Aligned_cols=63 Identities=8% Similarity=-0.011 Sum_probs=43.3
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..++|.|.+ ..|..++++|.+.+. .|+++ +++++..+.+.... +.++.++.+|.++++.+
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~l~~~~-----~~~~~~~~~D~~d~~~~ 65 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGH-------------RVVGT-VRSEAARADFEALH-----PDRALARLLDVTDFDAI 65 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcC-------------EEEEE-eCCHHHHHHHHhhc-----CCCeeEEEccCCCHHHH
Confidence 458899885 589999999987544 55554 66666665554321 23455668999999887
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
.++
T Consensus 66 ~~~ 68 (277)
T PRK06180 66 DAV 68 (277)
T ss_pred HHH
Confidence 664
No 189
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.18 E-value=52 Score=34.26 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=43.5
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..+++.|.+.+. .|++ .+++++.++...+.... .+.++.+..+|.++.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~-------------~vi~-~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 68 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA-------------KLAL-IDLNQEKLEEAVAECGA--LGTEVRGYAANVTDEED 68 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEE-EeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHH
Confidence 467899998 7799999999987544 4554 47766655554433211 13455566788888776
Q ss_pred HHh
Q 003003 373 YER 375 (858)
Q Consensus 373 L~r 375 (858)
+++
T Consensus 69 ~~~ 71 (253)
T PRK08217 69 VEA 71 (253)
T ss_pred HHH
Confidence 654
No 190
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=55.13 E-value=69 Score=35.81 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=52.1
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
....|+|.|. |-.|..++++|.+.+. .|+++ .++.+..+.+...+.. +.++.++.||..+.+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~ 71 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-------------TVHAT-LRDPAKSLHLLSKWKE---GDRLRLFRADLQEEG 71 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCChHHHHHHHHhhcc---CCeEEEEECCCCCHH
Confidence 4567999996 6799999999998654 56655 4444333333322211 234656789999999
Q ss_pred HHHhcCccccCeEEEecC
Q 003003 372 SYERAAANKARAIIILPT 389 (858)
Q Consensus 372 ~L~rA~i~~A~aVIIl~~ 389 (858)
.++++ ++..+.||-++.
T Consensus 72 ~~~~~-~~~~d~Vih~A~ 88 (353)
T PLN02896 72 SFDEA-VKGCDGVFHVAA 88 (353)
T ss_pred HHHHH-HcCCCEEEECCc
Confidence 88876 456787766665
No 191
>PLN02214 cinnamoyl-CoA reductase
Probab=55.01 E-value=68 Score=35.85 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=49.9
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHH-HHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQM-DKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~m-e~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
..+|+|.|. |-.|..++++|.+.++ .|+.+. ++.+.. +.....+... ..++.++.||..+.+
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-------------~V~~~~-r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~ 73 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-------------TVKGTV-RNPDDPKNTHLRELEGG--KERLILCKADLQDYE 73 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-------------EEEEEe-CCchhhhHHHHHHhhCC--CCcEEEEecCcCChH
Confidence 457999998 6799999999998655 455553 322211 1111111111 123556689999999
Q ss_pred HHHhcCccccCeEEEecCC
Q 003003 372 SYERAAANKARAIIILPTK 390 (858)
Q Consensus 372 ~L~rA~i~~A~aVIIl~~~ 390 (858)
.+.++ ++.++.||-++..
T Consensus 74 ~~~~~-~~~~d~Vih~A~~ 91 (342)
T PLN02214 74 ALKAA-IDGCDGVFHTASP 91 (342)
T ss_pred HHHHH-HhcCCEEEEecCC
Confidence 98776 4568877777653
No 192
>PLN02650 dihydroflavonol-4-reductase
Probab=54.82 E-value=45 Score=37.21 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=49.9
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
+.+|+|.|. |-.|..++++|.+.+. .|+++. +++...+.+...........++.++.||..+.+.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-------------~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~ 70 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-------------TVRATV-RDPANVKKVKHLLDLPGATTRLTLWKADLAVEGS 70 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-------------EEEEEE-cCcchhHHHHHHHhccCCCCceEEEEecCCChhh
Confidence 567999987 6799999999998655 455543 3332222221111000001245567899999988
Q ss_pred HHhcCccccCeEEEecC
Q 003003 373 YERAAANKARAIIILPT 389 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~ 389 (858)
++++ ++.++.||-++.
T Consensus 71 ~~~~-~~~~d~ViH~A~ 86 (351)
T PLN02650 71 FDDA-IRGCTGVFHVAT 86 (351)
T ss_pred HHHH-HhCCCEEEEeCC
Confidence 8775 456787776664
No 193
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=54.63 E-value=71 Score=33.91 Aligned_cols=56 Identities=18% Similarity=0.059 Sum_probs=37.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCC
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPL 661 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~t 661 (858)
...+|||+|+|+.+..=++.|.+ .|..|++++..-.++.... . ..-.+.++..+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~el~~l-~-------~~~~i~~~~r~~~ 79 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKEFLDL-K-------KYGNLKLIKGNYD 79 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHH-H-------hCCCEEEEeCCCC
Confidence 45799999999999887777754 4678999997544443322 1 1234666776654
No 194
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=54.60 E-value=54 Score=36.03 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=47.6
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh---HHHHHHHHhhccccCCceEEEecCCCCC
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR---KQMDKLAENIAKDLNHIDILSKSCSLTL 369 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~---~~me~l~~~~~~d~~~~~Vv~~~Gd~~~ 369 (858)
...+++|+|.|-.+..++..|...+. ..|+|+ +++. +..+++.+++.... ..+.....|..+
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~------------~~V~I~-~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~~ 189 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA------------KEITIF-NIKDDFYERAEQTAEKIKQEV--PECIVNVYDLND 189 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------------CEEEEE-eCCchHHHHHHHHHHHHhhcC--CCceeEEechhh
Confidence 35689999999999999999987654 247765 5553 44555544432211 122223455555
Q ss_pred HHHHHhcCccccCeEEEecC
Q 003003 370 TKSYERAAANKARAIIILPT 389 (858)
Q Consensus 370 ~e~L~rA~i~~A~aVIIl~~ 389 (858)
.+.++. .+++++. +|-++
T Consensus 190 ~~~~~~-~~~~~Di-lINaT 207 (289)
T PRK12548 190 TEKLKA-EIASSDI-LVNAT 207 (289)
T ss_pred hhHHHh-hhccCCE-EEEeC
Confidence 555543 3566784 55444
No 195
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=54.50 E-value=41 Score=35.64 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=46.6
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCC-HH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTL-TK 371 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~-~e 371 (858)
...|+|+|. |..|..++++|...++ .|+.+ .++++..+.... + +.++.++.||.++ .+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~-------------~V~~~-~R~~~~~~~~~~----~--~~~~~~~~~Dl~d~~~ 76 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGF-------------AVKAG-VRDVDKAKTSLP----Q--DPSLQIVRADVTEGSD 76 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC-------------EEEEE-ecCHHHHHHhcc----c--CCceEEEEeeCCCCHH
Confidence 346889995 7899999999987654 45555 344433332211 1 2245566899987 46
Q ss_pred HHHhcCccccCeEEEec
Q 003003 372 SYERAAANKARAIIILP 388 (858)
Q Consensus 372 ~L~rA~i~~A~aVIIl~ 388 (858)
.+.++-...++.||..+
T Consensus 77 ~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 77 KLVEAIGDDSDAVICAT 93 (251)
T ss_pred HHHHHhhcCCCEEEECC
Confidence 66554324688776654
No 196
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=54.44 E-value=46 Score=34.52 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=40.6
Q ss_pred EEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 297 IIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 297 III~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
++|.|.+ ..|..++++|.+.+. .++++...+++..+.+.+..... +.++.++.+|.++.+.+++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~ 65 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-------------EICVHYHSGRSDAESVVSAIQAQ--GGNARLLQFDVADRVACRT 65 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEccCCCHHHHHH
Confidence 4677754 589999999987654 56666555544444443322111 3456667888888887665
Q ss_pred c
Q 003003 376 A 376 (858)
Q Consensus 376 A 376 (858)
+
T Consensus 66 ~ 66 (239)
T TIGR01831 66 L 66 (239)
T ss_pred H
Confidence 4
No 197
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.43 E-value=67 Score=33.11 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=49.8
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..++|.|. |..|..++++|.+.++ .++++...+.+..+.+.+..... +.++.++.+|.++.+.+
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v 71 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGA-------------DVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAAL 71 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------------eEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHH
Confidence 36788876 5689999999988655 45555565555444443322111 33455668999999988
Q ss_pred HhcCc------cccCeEEEecC
Q 003003 374 ERAAA------NKARAIIILPT 389 (858)
Q Consensus 374 ~rA~i------~~A~aVIIl~~ 389 (858)
+++-. ..-+.+|-++.
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 72 EAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred HHHHHHHHHHcCCCCEEEECCc
Confidence 76521 24566555443
No 198
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.25 E-value=58 Score=35.76 Aligned_cols=68 Identities=7% Similarity=0.092 Sum_probs=44.0
Q ss_pred CCCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCC-ChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 293 ESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL-PRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 293 ~~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~-~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
+...+||.|.+. .|..++++|.+.+. .|++. +. +.+..+++.++... .+.++.+..+|.++.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-------------~Vv~~-~~~~~~~~~~~~~~i~~--~g~~~~~~~~Dv~d~ 74 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-------------TVVVN-DVASALDASDVLDEIRA--AGAKAVAVAGDISQR 74 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEe-cCCchhHHHHHHHHHHh--cCCeEEEEeCCCCCH
Confidence 345778888765 89999999988654 45554 43 33334443332211 145677788999998
Q ss_pred HHHHhc
Q 003003 371 KSYERA 376 (858)
Q Consensus 371 e~L~rA 376 (858)
+.++++
T Consensus 75 ~~~~~~ 80 (306)
T PRK07792 75 ATADEL 80 (306)
T ss_pred HHHHHH
Confidence 887765
No 199
>PRK12827 short chain dehydrogenase; Provisional
Probab=54.18 E-value=54 Score=34.06 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=49.8
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEe---CCChHHHHHHHHhhccccCCceEEEecCCCCC
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLS---DLPRKQMDKLAENIAKDLNHIDILSKSCSLTL 369 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~---d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~ 369 (858)
...++|.|.+ -.|..++++|.+.+. .++++. .++++..+.+.++... .+.++.++.+|.++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~ 70 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA-------------DVIVLDIHPMRGRAEADAVAAGIEA--AGGKALGLAFDVRD 70 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------eEEEEcCcccccHHHHHHHHHHHHh--cCCcEEEEEccCCC
Confidence 4578999875 589999999998654 455542 2234444444333211 13456677899999
Q ss_pred HHHHHhcCc------cccCeEEEec
Q 003003 370 TKSYERAAA------NKARAIIILP 388 (858)
Q Consensus 370 ~e~L~rA~i------~~A~aVIIl~ 388 (858)
++.++++-- ...+.+|-.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~d~vi~~a 95 (249)
T PRK12827 71 FAATRAALDAGVEEFGRLDILVNNA 95 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECC
Confidence 988877631 3456555443
No 200
>PRK05875 short chain dehydrogenase; Provisional
Probab=54.01 E-value=57 Score=34.76 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=50.5
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. |..|..++++|.+.+. .|+++ .++++..+...+.......+.++.+..+|.++++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~ 72 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA-------------AVMIV-GRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQ 72 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHH
Confidence 567899997 5799999999987654 55554 66665555544332111012345666889998887
Q ss_pred HHhcCc------cccCeEEEec
Q 003003 373 YERAAA------NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i------~~A~aVIIl~ 388 (858)
++++-- ...+.+|..+
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~a 94 (276)
T PRK05875 73 VARAVDAATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 776522 1457655544
No 201
>PRK08862 short chain dehydrogenase; Provisional
Probab=53.93 E-value=56 Score=34.24 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=30.8
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
...++|.|.+. .|..++++|.+.+. .|++ ..++++.++++.+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-------------~V~~-~~r~~~~l~~~~~ 47 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-------------TLIL-CDQDQSALKDTYE 47 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-------------EEEE-EcCCHHHHHHHHH
Confidence 35788999886 89999999988654 5554 4777776666544
No 202
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=53.83 E-value=17 Score=33.34 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=28.4
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCC
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP 340 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~ 340 (858)
+..+++|+|.|+.+..-++.|.+++. .|.|+++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-------------~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-------------KVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-------------EEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-------------EEEEECCch
Confidence 46789999999999999999988654 688887654
No 203
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=53.64 E-value=63 Score=33.46 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=44.5
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|.|. +..|..++++|.+.+. .|+ +..++.+.++++.... +.++.++.+|.++.+
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~-------------~v~-~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~ 65 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA-------------IVG-LHGTRVEKLEALAAEL-----GERVKIFPANLSDRD 65 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------------EEE-EEcCCHHHHHHHHHHh-----CCceEEEEccCCCHH
Confidence 3568899986 5689999999987543 344 4466666666654422 234556688999998
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 66 ~~~~~ 70 (245)
T PRK12936 66 EVKAL 70 (245)
T ss_pred HHHHH
Confidence 88775
No 204
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=53.40 E-value=1.6e+02 Score=34.44 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCeEEEEccCchHHHHHHHHHhcC
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYH 317 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~ 317 (858)
..+++|+|.|+.+..++++|...+
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~ 151 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNP 151 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCc
Confidence 567999999999999999997643
No 205
>PRK06198 short chain dehydrogenase; Provisional
Probab=52.99 E-value=69 Score=33.70 Aligned_cols=69 Identities=9% Similarity=0.079 Sum_probs=44.0
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
....++|.|.+ ..|..++++|.+.+. ..|+++ +++++..+...+.... .+.++.++.+|.++++
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~------------~~V~~~-~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~ 69 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA------------AGLVIC-GRNAEKGEAQAAELEA--LGAKAVFVQADLSDVE 69 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC------------CeEEEE-cCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHH
Confidence 34568889874 589999999987544 125544 6665544443332211 1445666788999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.+.++
T Consensus 70 ~~~~~ 74 (260)
T PRK06198 70 DCRRV 74 (260)
T ss_pred HHHHH
Confidence 77665
No 206
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=52.89 E-value=56 Score=34.10 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=42.1
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
.++|.|. |..|..++++|.+.+. .|+++ +++++..+.+...... .+.++..+.+|..++++++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~ 66 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGA-------------NVVVN-DLGEAGAEAAAKVATD--AGGSVIYLVADVTKEDEIA 66 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCceEEEECCCCCHHHHH
Confidence 4788886 5699999999987544 45554 6666555555433211 1345666789999998664
Q ss_pred h
Q 003003 375 R 375 (858)
Q Consensus 375 r 375 (858)
+
T Consensus 67 ~ 67 (255)
T TIGR01963 67 D 67 (255)
T ss_pred H
Confidence 4
No 207
>PRK07904 short chain dehydrogenase; Provisional
Probab=52.64 E-value=50 Score=35.08 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=42.2
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHH-HHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQ-MDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~-me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
..+++|+|.+. .|..++++|.+.+. ..|+++ .++++. ++++.++... ..+.++.++.+|.++++
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg------------~~V~~~-~r~~~~~~~~~~~~l~~-~~~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAP------------ARVVLA-ALPDDPRRDAAVAQMKA-AGASSVEVIDFDALDTD 73 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC------------CeEEEE-eCCcchhHHHHHHHHHh-cCCCceEEEEecCCChH
Confidence 55799999865 89999999987531 145544 555443 5554443311 11235666788888877
Q ss_pred HHHh
Q 003003 372 SYER 375 (858)
Q Consensus 372 ~L~r 375 (858)
..++
T Consensus 74 ~~~~ 77 (253)
T PRK07904 74 SHPK 77 (253)
T ss_pred HHHH
Confidence 6543
No 208
>PRK05993 short chain dehydrogenase; Provisional
Probab=52.57 E-value=48 Score=35.63 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=42.4
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. |..|..++++|.+.+. .|+++ .++++.++.+.+. + +.++.+|.++.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-------------~Vi~~-~r~~~~~~~l~~~------~--~~~~~~Dl~d~~~ 61 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-------------RVFAT-CRKEEDVAALEAE------G--LEAFQLDYAEPES 61 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHC------C--ceEEEccCCCHHH
Confidence 347899998 5699999999987544 55554 6766666655431 2 3345789999887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 62 ~~~~ 65 (277)
T PRK05993 62 IAAL 65 (277)
T ss_pred HHHH
Confidence 7665
No 209
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=52.49 E-value=25 Score=36.76 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=41.1
Q ss_pred EEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 599 ILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 599 vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
|+|.|. |..+..+++.|.+ ++..|+.+-..+..++.+.+. ...+..+.||..|.+.|.++
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~--------~~g~~vv~~d~~~~~~l~~a 61 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQ--------ALGAEVVEADYDDPESLVAA 61 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHH--------HTTTEEEES-TT-HHHHHHH
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhh--------cccceEeecccCCHHHHHHH
Confidence 678887 7889999999976 677788887644433333222 22234489999999999987
No 210
>PRK08267 short chain dehydrogenase; Provisional
Probab=52.47 E-value=28 Score=36.77 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=44.3
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+++||.|.+. .+..+++.|.+ .|..|.+++.. .+..+.+.. .+.+..++++++|.++.+.++++
T Consensus 2 k~vlItGasg~iG~~la~~l~~---~G~~V~~~~r~--~~~~~~~~~----~~~~~~~~~~~~D~~~~~~v~~~ 66 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAA---EGWRVGAYDIN--EAGLAALAA----ELGAGNAWTGALDVTDRAAWDAA 66 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHH----HhcCCceEEEEecCCCHHHHHHH
Confidence 4689999875 58889999964 57778887752 222222221 12245678899999999998876
No 211
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=52.42 E-value=38 Score=32.68 Aligned_cols=122 Identities=15% Similarity=0.294 Sum_probs=66.8
Q ss_pred cCCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 292 ~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
....+++|+|.|..+..++..|...+. ..|.|+ +++.+..+++.+.+. +..+-+. ..+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~------------~~i~i~-nRt~~ra~~l~~~~~----~~~~~~~-----~~~ 67 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA------------KEITIV-NRTPERAEALAEEFG----GVNIEAI-----PLE 67 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS------------SEEEEE-ESSHHHHHHHHHHHT----GCSEEEE-----EGG
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC------------CEEEEE-ECCHHHHHHHHHHcC----cccccee-----eHH
Confidence 458899999999999999999998755 357765 788887888776551 2222221 123
Q ss_pred HHHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHH-HHHhcCCCeEEehHHH
Q 003003 372 SYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE-LLKSLSGLKVEPVENV 445 (858)
Q Consensus 372 ~L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~-~l~~ag~d~Vi~~~~i 445 (858)
++. ....+|+ +||.++.........+.+ . ... ....++.-+--|.+.+ .+....+-.++..+++
T Consensus 68 ~~~-~~~~~~D-ivI~aT~~~~~~i~~~~~----~--~~~--~~~~~v~Dla~Pr~i~~~v~~~~~v~~~~~d~l 132 (135)
T PF01488_consen 68 DLE-EALQEAD-IVINATPSGMPIITEEML----K--KAS--KKLRLVIDLAVPRDIDPEVAELPGVRLYDLDDL 132 (135)
T ss_dssp GHC-HHHHTES-EEEE-SSTTSTSSTHHHH----T--TTC--HHCSEEEES-SS-SB-TTCGGSTTECCEEHHHH
T ss_pred HHH-HHHhhCC-eEEEecCCCCcccCHHHH----H--HHH--hhhhceeccccCCCCChhhcccCCeEEEEhhhc
Confidence 333 2367788 455555432111112211 1 111 0123676665565554 3444444456666554
No 212
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=52.40 E-value=64 Score=34.00 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=42.2
Q ss_pred eEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
-++|.|.+ ..|..+++.|.+.+. .|+++ ++++...+.+.+.......+.++.+..+|.++++.++
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~-------------~vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~ 69 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGY-------------RVAVA-DINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVL 69 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHH
Confidence 47888875 589999999987644 55554 6666555554332211111134666788888888777
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 70 ~~ 71 (259)
T PRK12384 70 AL 71 (259)
T ss_pred HH
Confidence 65
No 213
>PRK08226 short chain dehydrogenase; Provisional
Probab=52.13 E-value=68 Score=33.85 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=42.6
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|.|.+ ..|..+++.|.+.+. .|+++ +++.+. ++..++... .+.++.++.+|.++++
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-------------~Vv~~-~r~~~~-~~~~~~~~~--~~~~~~~~~~Dl~~~~ 67 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-------------NLILL-DISPEI-EKLADELCG--RGHRCTAVVADVRDPA 67 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEe-cCCHHH-HHHHHHHHH--hCCceEEEECCCCCHH
Confidence 35678888875 589999999988654 56555 555432 222221111 1345666789999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 68 ~v~~~ 72 (263)
T PRK08226 68 SVAAA 72 (263)
T ss_pred HHHHH
Confidence 87765
No 214
>PRK05884 short chain dehydrogenase; Provisional
Probab=52.05 E-value=44 Score=34.76 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=41.3
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
+++|.|. +..|..++++|.+.+. .|+++ +++++.++.+.+.. + +.++.+|.++++.++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-------------~v~~~-~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~v~ 60 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-------------KVTLV-GARRDDLEVAAKEL-----D--VDAIVCDNTDPASLE 60 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHhc-----c--CcEEecCCCCHHHHH
Confidence 4788887 5689999999987544 55554 67776666654422 2 224478999998887
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 61 ~~ 62 (223)
T PRK05884 61 EA 62 (223)
T ss_pred HH
Confidence 65
No 215
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=52.03 E-value=63 Score=35.62 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=41.9
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcC-ccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYH-EFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~-~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
+.+++|.|.+. .|..++++|.+.+ . .|++. .++.+..+++.+.+.. .+.++.+..+|.++.+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~-------------~V~l~-~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~ 66 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW-------------HVIMA-CRDFLKAEQAAKSLGM--PKDSYTIMHLDLGSLD 66 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC-------------EEEEE-eCCHHHHHHHHHHhcC--CCCeEEEEEcCCCCHH
Confidence 55889999876 8999999998765 3 45554 5666555555443211 1233444566776666
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 67 ~v~~~ 71 (314)
T TIGR01289 67 SVRQF 71 (314)
T ss_pred HHHHH
Confidence 65544
No 216
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=51.97 E-value=82 Score=36.57 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=49.7
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...+++|+|+|+.+.-+++.|...+. ..|.| +++..+.-+++.+.+ + |.+...+.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~------------~~i~I-aNRT~erA~~La~~~-----~-------~~~~~l~e 231 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV------------KKITI-ANRTLERAEELAKKL-----G-------AEAVALEE 231 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC------------CEEEE-EcCCHHHHHHHHHHh-----C-------CeeecHHH
Confidence 36689999999999999999998765 25665 488777777777654 2 33444555
Q ss_pred HHhcCccccCeEEEecCCC
Q 003003 373 YERAAANKARAIIILPTKG 391 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~ 391 (858)
|... +..||. ||.++..
T Consensus 232 l~~~-l~~~Dv-VissTsa 248 (414)
T COG0373 232 LLEA-LAEADV-VISSTSA 248 (414)
T ss_pred HHHh-hhhCCE-EEEecCC
Confidence 4443 788894 4445433
No 217
>PRK07677 short chain dehydrogenase; Provisional
Probab=51.66 E-value=56 Score=34.39 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=42.3
Q ss_pred eEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
-++|.|.+. .|..++++|.+.+. .|+++ +++.+..+++.+..... +.++.++.+|.++++.++
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~ 66 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGA-------------NVVIT-GRTKEKLEEAKLEIEQF--PGQVLTVQMDVRNPEDVQ 66 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHH
Confidence 467888765 89999999987544 45544 66665555544322111 235666788998888776
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 67 ~~ 68 (252)
T PRK07677 67 KM 68 (252)
T ss_pred HH
Confidence 64
No 218
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=51.66 E-value=68 Score=35.35 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=42.7
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ -.|..++++|.+.+. .|+++ .++.+..+++.++... .+.++.++.+|.++.+.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~ 69 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW-------------HVIMA-CRNLKKAEAAAQELGI--PPDSYTIIHIDLGDLDS 69 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHhhc--cCCceEEEEecCCCHHH
Confidence 4568889875 489999999987654 56554 6666655554443211 12345556777777776
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 70 v~~~ 73 (322)
T PRK07453 70 VRRF 73 (322)
T ss_pred HHHH
Confidence 6554
No 219
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.63 E-value=63 Score=34.41 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=40.7
Q ss_pred CCeEEEEccC---chHHHHHHHHHhcCccccccccccCCCceEEEEe--CCChHHHHHHHHhhccccCCceEEEecCCCC
Q 003003 294 SDHIIVCGVN---SHLSFILKQLNKYHEFSVRLGTATARKQRILLLS--DLPRKQMDKLAENIAKDLNHIDILSKSCSLT 368 (858)
Q Consensus 294 ~~HIII~G~~---~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~--d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~ 368 (858)
...++|.|.+ ..|..++++|.+.+. .|++.. +++.+.++++.++. .+.++.+...|.+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~-------------~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~ 69 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGA-------------KLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVT 69 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC-------------EEEEecCcccchHHHHHHHHHc----CCCceEEEecCCC
Confidence 4578899984 799999999998654 455542 12344555554432 1234555567777
Q ss_pred CHHHHHhc
Q 003003 369 LTKSYERA 376 (858)
Q Consensus 369 ~~e~L~rA 376 (858)
+++..+++
T Consensus 70 d~~~v~~~ 77 (257)
T PRK08594 70 SDEEITAC 77 (257)
T ss_pred CHHHHHHH
Confidence 77665543
No 220
>PRK05872 short chain dehydrogenase; Provisional
Probab=51.28 E-value=65 Score=35.11 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=46.2
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
....++|.|.+ ..|..++++|.+.+. .|+++ .++++.++++.++... +.++.+..+|.++.+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-------------KLALV-DLEEAELAALAAELGG---DDRVLTVVADVTDLA 70 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHhcC---CCcEEEEEecCCCHH
Confidence 35678888875 589999999987654 45544 7777777776554421 344555678888888
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 71 ~v~~~ 75 (296)
T PRK05872 71 AMQAA 75 (296)
T ss_pred HHHHH
Confidence 77665
No 221
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=51.11 E-value=41 Score=36.30 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=45.6
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCC-----hHHHHHHHHhhccccCCceEEEecCCCCC
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-----RKQMDKLAENIAKDLNHIDILSKSCSLTL 369 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~-----~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~ 369 (858)
+|+|.|. |-.|..++++|.+.+.. ..|+++ ++. .+.++.+. . ..++.++.||.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~-----------~~v~~~-~~~~~~~~~~~~~~~~-----~--~~~~~~~~~Dl~~ 61 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD-----------AEVIVL-DKLTYAGNLENLADLE-----D--NPRYRFVKGDIGD 61 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC-----------CEEEEe-cCCCcchhhhhhhhhc-----c--CCCcEEEEcCCcC
Confidence 4788887 67999999999876421 145555 321 12222211 1 1234556899999
Q ss_pred HHHHHhcCccc--cCeEEEecC
Q 003003 370 TKSYERAAANK--ARAIIILPT 389 (858)
Q Consensus 370 ~e~L~rA~i~~--A~aVIIl~~ 389 (858)
++.+.++ ++. ++.||-++.
T Consensus 62 ~~~~~~~-~~~~~~d~vi~~a~ 82 (317)
T TIGR01181 62 RELVSRL-FTEHQPDAVVHFAA 82 (317)
T ss_pred HHHHHHH-HhhcCCCEEEEccc
Confidence 9998876 343 787666554
No 222
>PRK08017 oxidoreductase; Provisional
Probab=50.78 E-value=48 Score=34.77 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=39.3
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
+.++|.|. |..|..++++|.+.+. .|+++ .++.+.++.+.+ . + +.++.+|.++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-------------~v~~~-~r~~~~~~~~~~-~-----~--~~~~~~D~~~~~~~ 60 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-------------RVLAA-CRKPDDVARMNS-L-----G--FTGILLDLDDPESV 60 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHhHHHHh-C-----C--CeEEEeecCCHHHH
Confidence 46999998 7899999999987543 45544 666655554432 1 2 33446788887766
Q ss_pred Hh
Q 003003 374 ER 375 (858)
Q Consensus 374 ~r 375 (858)
+.
T Consensus 61 ~~ 62 (256)
T PRK08017 61 ER 62 (256)
T ss_pred HH
Confidence 54
No 223
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=50.64 E-value=1.6e+02 Score=32.71 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=33.5
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhh
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 351 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~ 351 (858)
..-.||.|.++ .|...++||.+.+- .||++ .++++.++....+.
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~-------------nvvLI-sRt~~KL~~v~kEI 93 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGF-------------NVVLI-SRTQEKLEAVAKEI 93 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHH
Confidence 46789999976 89999999998654 56766 67787777765443
No 224
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=50.48 E-value=1.7e+02 Score=34.11 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=58.4
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
....++|+|.|..|..+++.|...+. ..|++. +++++..+.+.+.+ +.++ ...++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~------------~~V~v~-~r~~~ra~~la~~~-----g~~~-------~~~~~ 235 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV------------RKITVA-NRTLERAEELAEEF-----GGEA-------IPLDE 235 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC------------CeEEEE-eCCHHHHHHHHHHc-----CCcE-------eeHHH
Confidence 35789999999999999999986543 245544 77766555555433 2222 22345
Q ss_pred HHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHH
Q 003003 373 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE 429 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~ 429 (858)
+.++ +..|+.| |.++..+..-.+.+.+...+.-+. ....+++=+..|.+.+
T Consensus 236 ~~~~-l~~aDvV-I~aT~s~~~~i~~~~l~~~~~~~~----~~~~vviDla~Prdid 286 (423)
T PRK00045 236 LPEA-LAEADIV-ISSTGAPHPIIGKGMVERALKARR----HRPLLLVDLAVPRDIE 286 (423)
T ss_pred HHHH-hccCCEE-EECCCCCCcEEcHHHHHHHHhhcc----CCCeEEEEeCCCCCCc
Confidence 5433 5688954 444433321223444444332111 1123566666666554
No 225
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=50.42 E-value=2e+02 Score=33.58 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=20.8
Q ss_pred CCeEEEEccCchHHHHHHHHHhcC
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYH 317 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~ 317 (858)
..+++|+|.|+.+..++++|.+..
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~ 148 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNP 148 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCc
Confidence 456999999999999999998643
No 226
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.35 E-value=1.2e+02 Score=33.73 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=42.9
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..|++|.|-.+ .|..+..++...++ +|.++ -++.+.++++.+.........+|-|.++|..+.+.
T Consensus 33 ~~hi~itggS~glgl~la~e~~~~ga-------------~Vti~-ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~ 98 (331)
T KOG1210|consen 33 RRHILITGGSSGLGLALALECKREGA-------------DVTIT-ARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDS 98 (331)
T ss_pred cceEEEecCcchhhHHHHHHHHHccC-------------ceEEE-eccHHHHHHHHhhhhhhhccceeeEeccccccHHH
Confidence 48999999876 78889999988655 57766 45555566555443222223447788888755543
No 227
>PRK06182 short chain dehydrogenase; Validated
Probab=50.29 E-value=50 Score=35.25 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=48.2
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..++++|.+.+. .|+++ .++++.++++.. . + +.+..+|.+++++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-------------~V~~~-~r~~~~l~~~~~----~--~--~~~~~~Dv~~~~~ 60 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-------------TVYGA-ARRVDKMEDLAS----L--G--VHPLSLDVTDEAS 60 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHh----C--C--CeEEEeeCCCHHH
Confidence 457899997 5699999999987654 45544 666666655432 1 2 3445799999998
Q ss_pred HHhcCc------cccCeEEEec
Q 003003 373 YERAAA------NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i------~~A~aVIIl~ 388 (858)
++++-- ...+.+|-.+
T Consensus 61 ~~~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 876532 2457555544
No 228
>PRK09072 short chain dehydrogenase; Provisional
Probab=50.26 E-value=71 Score=33.82 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=49.8
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..++++|.+.+. .|+++ +++++.++++.... .. +.++.++.+|.++++.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~ 67 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-------------RLLLV-GRNAEKLEALAARL-PY--PGRHRWVVADLTSEAG 67 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHH
Confidence 456888886 5689999999987654 55554 67776666654432 11 2345566889998887
Q ss_pred HHhcC-----ccccCeEEEec
Q 003003 373 YERAA-----ANKARAIIILP 388 (858)
Q Consensus 373 L~rA~-----i~~A~aVIIl~ 388 (858)
++++- ....+.+|..+
T Consensus 68 ~~~~~~~~~~~~~id~lv~~a 88 (263)
T PRK09072 68 REAVLARAREMGGINVLINNA 88 (263)
T ss_pred HHHHHHHHHhcCCCCEEEECC
Confidence 66542 13456555543
No 229
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=50.22 E-value=56 Score=34.83 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=40.8
Q ss_pred eEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 296 HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.++|.|.+ ..|..++++|.+.+. .|+++..++++.++.+.+.+... .+.++.+..+|.++.+.+
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~-------------~V~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~d~~~~ 67 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY-------------RVVLHYHRSAAAASTLAAELNAR-RPNSAVTCQADLSNSATL 67 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC-------------eEEEEcCCcHHHHHHHHHHHHhc-cCCceEEEEccCCCchhh
Confidence 57888876 489999999998654 56665445555555544433111 123455567898888754
No 230
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.12 E-value=82 Score=33.32 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=21.3
Q ss_pred CCCeEEEEccC---chHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVN---SHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~---~~~~~li~eL~~~~~ 318 (858)
+...++|.|.+ ..|..++++|.+.+.
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~ 33 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGA 33 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCC
Confidence 45689999997 599999999998654
No 231
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=49.90 E-value=1.4e+02 Score=34.68 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=47.8
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++..++..+.. +.++....+|.++++.
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G~-------------~Vi~l-~r~~~~l~~~~~~~-----~~~v~~v~~Dvsd~~~ 238 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQGA-------------KVVAL-TSNSDKITLEINGE-----DLPVKTLHWQVGQEAA 238 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHhhc-----CCCeEEEEeeCCCHHH
Confidence 4578899885 589999999987544 56655 55554444322211 2234455789999988
Q ss_pred HHhcCccccCeEEEec
Q 003003 373 YERAAANKARAIIILP 388 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~ 388 (858)
+++. ..+.+.+|..+
T Consensus 239 v~~~-l~~IDiLInnA 253 (406)
T PRK07424 239 LAEL-LEKVDILIINH 253 (406)
T ss_pred HHHH-hCCCCEEEECC
Confidence 7764 45678655543
No 232
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=49.87 E-value=59 Score=38.94 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=48.5
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...|+|.|. |..|..+++|+.+.+. ..|+++ +.++-.+..+..++...+...++.+..||-.|.+-
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p------------~~i~l~-~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~ 316 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP------------KEIILF-SRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDR 316 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC------------CEEEEe-cCchHHHHHHHHHHHhhCCCcceEEEecccccHHH
Confidence 445666666 5799999999998766 367766 66665554444444222224667777899999998
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 317 ~~~~ 320 (588)
T COG1086 317 VERA 320 (588)
T ss_pred HHHH
Confidence 8887
No 233
>PRK06484 short chain dehydrogenase; Validated
Probab=49.81 E-value=55 Score=38.67 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=44.3
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+. .|..++++|.+.+. .|+++ +++++.++++.+.. +.++.+..+|.++++.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~ 329 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-------------RLLII-DRDAEGAKKLAEAL-----GDEHLSVQADITDEAA 329 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh-----CCceeEEEccCCCHHH
Confidence 46788888865 89999999998654 45554 77777777665433 2344556788888777
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 330 ~~~~ 333 (520)
T PRK06484 330 VESA 333 (520)
T ss_pred HHHH
Confidence 6654
No 234
>PRK06123 short chain dehydrogenase; Provisional
Probab=49.81 E-value=71 Score=33.28 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=41.2
Q ss_pred CeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.-++|.|.+. .|..++++|.+.+. .+++...++++..+.+.+.+.. .+.++.++.+|.++.+.+
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~-------------~vv~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~ 67 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGY-------------AVCLNYLRNRDAAEAVVQAIRR--QGGEALAVAADVADEADV 67 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------------eEEEecCCCHHHHHHHHHHHHh--CCCcEEEEEeccCCHHHH
Confidence 3578888865 89999999987543 4554433444444443332211 133455668888888877
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 68 ~~~ 70 (248)
T PRK06123 68 LRL 70 (248)
T ss_pred HHH
Confidence 765
No 235
>PRK08309 short chain dehydrogenase; Provisional
Probab=49.74 E-value=77 Score=32.23 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=39.6
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
+++|.|.+..+..++++|.+.+. .|++. .++++..+.+..... . ..++.+..+|..+++.+++
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~-------------~V~v~-~R~~~~~~~l~~~l~-~--~~~i~~~~~Dv~d~~sv~~ 64 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGF-------------HVSVI-ARREVKLENVKREST-T--PESITPLPLDYHDDDALKL 64 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcC-------------EEEEE-ECCHHHHHHHHHHhh-c--CCcEEEEEccCCCHHHHHH
Confidence 68999987777778999987654 45554 566666655443221 1 1234445667777666655
Q ss_pred c
Q 003003 376 A 376 (858)
Q Consensus 376 A 376 (858)
+
T Consensus 65 ~ 65 (177)
T PRK08309 65 A 65 (177)
T ss_pred H
Confidence 4
No 236
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=49.35 E-value=86 Score=32.45 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=40.8
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCC-hHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~-~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..++|.|. +..|..++++|.+.+. .|+++ +++ .+..+++...... .+.++.++.+|.++.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~-------------~vi~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 66 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY-------------RVIAT-YFSGNDCAKDWFEEYGF--TEDQVRLKELDVTDTEE 66 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-eCCcHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHH
Confidence 46788875 4689999999987544 45555 443 3333333322211 13456677899999887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 67 v~~~ 70 (245)
T PRK12824 67 CAEA 70 (245)
T ss_pred HHHH
Confidence 7664
No 237
>PRK08628 short chain dehydrogenase; Provisional
Probab=49.26 E-value=69 Score=33.69 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=41.9
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .++++ .++++.. ++.+.... .+.++.++.+|.++++.
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~-------------~v~~~-~r~~~~~-~~~~~~~~--~~~~~~~~~~D~~~~~~ 69 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA-------------IPVIF-GRSAPDD-EFAEELRA--LQPRAEFVQVDLTDDAQ 69 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-------------cEEEE-cCChhhH-HHHHHHHh--cCCceEEEEccCCCHHH
Confidence 4678888875 589999999987654 45555 4444333 22222111 13456677899999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 70 ~~~~ 73 (258)
T PRK08628 70 CRDA 73 (258)
T ss_pred HHHH
Confidence 8764
No 238
>PRK07985 oxidoreductase; Provisional
Probab=49.20 E-value=71 Score=34.84 Aligned_cols=67 Identities=9% Similarity=-0.013 Sum_probs=41.5
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCC--ChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL--PRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~--~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
...++|.|.+ ..|..++++|.+.+. .|++. .+ +.+..+++.+.... .+.++.+..+|.++.
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~-------------~Vi~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~ 112 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGA-------------DVAIS-YLPVEEEDAQDVKKIIEE--CGRKAVLLPGDLSDE 112 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------------EEEEe-cCCcchhhHHHHHHHHHH--cCCeEEEEEccCCCH
Confidence 4578899985 489999999998654 45544 32 22333333222111 134566678898888
Q ss_pred HHHHhc
Q 003003 371 KSYERA 376 (858)
Q Consensus 371 e~L~rA 376 (858)
+.+.++
T Consensus 113 ~~~~~~ 118 (294)
T PRK07985 113 KFARSL 118 (294)
T ss_pred HHHHHH
Confidence 877654
No 239
>PRK12744 short chain dehydrogenase; Provisional
Probab=49.20 E-value=74 Score=33.53 Aligned_cols=68 Identities=9% Similarity=0.151 Sum_probs=42.4
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCC---ChHHHHHHHHhhccccCCceEEEecCCCCC
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL---PRKQMDKLAENIAKDLNHIDILSKSCSLTL 369 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~---~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~ 369 (858)
..+++|.|.+ ..|..+++.|.+.+. .++++..+ +.+..+++.+.+.. .+.++.++.+|.++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~-------------~vv~i~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~ 72 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA-------------KAVAIHYNSAASKADAEETVAAVKA--AGAKAVAFQADLTT 72 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-------------cEEEEecCCccchHHHHHHHHHHHH--hCCcEEEEecCcCC
Confidence 4578888865 589999999987544 44555322 23334443332211 13456667899999
Q ss_pred HHHHHhc
Q 003003 370 TKSYERA 376 (858)
Q Consensus 370 ~e~L~rA 376 (858)
++.++++
T Consensus 73 ~~~~~~~ 79 (257)
T PRK12744 73 AAAVEKL 79 (257)
T ss_pred HHHHHHH
Confidence 9888765
No 240
>PLN02214 cinnamoyl-CoA reductase
Probab=49.19 E-value=1.8e+02 Score=32.49 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=43.3
Q ss_pred CCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|. |-.+..++++|.+ .|..|+.+...+.......+..+. .. ..++.++.||.+|.+.+.++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~--~~-~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLE---RGYTVKGTVRNPDDPKNTHLRELE--GG-KERLILCKADLQDYEALKAA 78 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CcCEEEEEeCCchhhhHHHHHHhh--CC-CCcEEEEecCcCChHHHHHH
Confidence 467999998 6789999999964 577777765422211111111110 01 12467799999999999876
No 241
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=49.00 E-value=51 Score=35.99 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=48.3
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCC--hHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP--RKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~--~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
..|+|.|. |-.|..++++|.+.++ .|+++.-.+ ....+.+.. . ... ..++.++.||..+++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~-------------~V~~~~r~~~~~~~~~~~~~-~-~~~-~~~~~~~~~Dl~~~~ 68 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGY-------------TVKATVRDPNDPKKTEHLLA-L-DGA-KERLHLFKANLLEEG 68 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCC-------------EEEEEEcCCCchhhHHHHHh-c-cCC-CCceEEEeccccCcc
Confidence 46899995 7799999999998655 455443221 111222211 0 000 124556789999988
Q ss_pred HHHhcCccccCeEEEecC
Q 003003 372 SYERAAANKARAIIILPT 389 (858)
Q Consensus 372 ~L~rA~i~~A~aVIIl~~ 389 (858)
.+.++ ++.++.||-++.
T Consensus 69 ~~~~~-~~~~d~Vih~A~ 85 (322)
T PLN02662 69 SFDSV-VDGCEGVFHTAS 85 (322)
T ss_pred hHHHH-HcCCCEEEEeCC
Confidence 88766 456787777765
No 242
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=48.87 E-value=68 Score=35.20 Aligned_cols=81 Identities=19% Similarity=0.060 Sum_probs=48.8
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. |-.|..++++|.+.++ .|+++ .++++..+.............++.++.||.++.+.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~ 70 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-------------TINAT-VRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGS 70 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-------------EEEEE-EcCCcchhhHHHHHhccCCCCceEEEeCCCCCchH
Confidence 357889986 5699999999998655 45444 33322222211111000001245566899999998
Q ss_pred HHhcCccccCeEEEecC
Q 003003 373 YERAAANKARAIIILPT 389 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~ 389 (858)
++++ ++..+.||-++.
T Consensus 71 ~~~~-~~~~d~vih~A~ 86 (325)
T PLN02989 71 FELA-IDGCETVFHTAS 86 (325)
T ss_pred HHHH-HcCCCEEEEeCC
Confidence 8876 456787766664
No 243
>PRK01581 speE spermidine synthase; Validated
Probab=48.85 E-value=1.1e+02 Score=34.97 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=40.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhh------hcccCCCCcCCceEEEEECCCCCHHHHHh
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRA------SNAIGHGKLKNVQVFHKIGNPLNFETLKD 668 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~------l~~~~~~~l~~~~V~~i~GD~td~~~L~e 668 (858)
.+++||++|.|.-+ .++++.++ .+..+|++++-. ++.-+. +.++....+.+.+++.+.||+.+ .|++
T Consensus 150 ~PkrVLIIGgGdG~--tlrelLk~-~~v~~It~VEID--peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--fL~~ 222 (374)
T PRK01581 150 DPKRVLILGGGDGL--ALREVLKY-ETVLHVDLVDLD--GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--FLSS 222 (374)
T ss_pred CCCEEEEECCCHHH--HHHHHHhc-CCCCeEEEEeCC--HHHHHHHHhccccchhccccCCCCceEEEECcHHH--HHHh
Confidence 46899999988443 55666554 345678888863 332221 11111223456677889999985 3444
No 244
>PRK06701 short chain dehydrogenase; Provisional
Probab=48.78 E-value=78 Score=34.45 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=42.2
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++.-......+.+.+.... .+.++.++.+|.++.+.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-------------~V~l~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~ 110 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-------------DIAIVYLDEHEDANETKQRVEK--EGVKCLLIPGDVSDEAF 110 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------------EEEEEeCCcchHHHHHHHHHHh--cCCeEEEEEccCCCHHH
Confidence 4578889875 599999999988654 4555432222223333222211 14566677899999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 111 ~~~~ 114 (290)
T PRK06701 111 CKDA 114 (290)
T ss_pred HHHH
Confidence 7665
No 245
>PRK06125 short chain dehydrogenase; Provisional
Probab=48.52 E-value=77 Score=33.46 Aligned_cols=68 Identities=10% Similarity=0.196 Sum_probs=43.5
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++..+++.+++... .+.++.++.+|.++++.
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~ 71 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-------------HLHLV-ARDADALEALAADLRAA-HGVDVAVHALDLSSPEA 71 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHH
Confidence 4577888874 589999999987543 45554 66665555544332111 13455666788888877
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 72 ~~~~ 75 (259)
T PRK06125 72 REQL 75 (259)
T ss_pred HHHH
Confidence 7654
No 246
>PRK06179 short chain dehydrogenase; Provisional
Probab=48.40 E-value=38 Score=36.00 Aligned_cols=59 Identities=14% Similarity=0.006 Sum_probs=39.7
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ .++++..+. ..++.++.+|.++++.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~-------------~V~~~-~r~~~~~~~----------~~~~~~~~~D~~d~~~ 59 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY-------------RVFGT-SRNPARAAP----------IPGVELLELDVTDDAS 59 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-------------EEEEE-eCChhhccc----------cCCCeeEEeecCCHHH
Confidence 4578899875 589999999987644 55555 555433221 1124455899999998
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 60 ~~~~ 63 (270)
T PRK06179 60 VQAA 63 (270)
T ss_pred HHHH
Confidence 8775
No 247
>PRK12742 oxidoreductase; Provisional
Probab=48.28 E-value=73 Score=32.90 Aligned_cols=63 Identities=8% Similarity=0.061 Sum_probs=40.2
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..++++|.+.+. .++++..++++..+++..+. +. .++.+|.++.+.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~-------------~v~~~~~~~~~~~~~l~~~~-----~~--~~~~~D~~~~~~ 65 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA-------------NVRFTYAGSKDAAERLAQET-----GA--TAVQTDSADRDA 65 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEecCCCHHHHHHHHHHh-----CC--eEEecCCCCHHH
Confidence 457889987 5699999999987654 45555344555555554322 22 234678888776
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
+.++
T Consensus 66 ~~~~ 69 (237)
T PRK12742 66 VIDV 69 (237)
T ss_pred HHHH
Confidence 6544
No 248
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.19 E-value=1.5e+02 Score=32.79 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=40.4
Q ss_pred cCCCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 292 LESDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 292 ~~~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
....-++|.|.|. .|..++.|+.+.+. .+| +.|.+++..++-.++.... | .+..-..|-++.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-------------~~v-l~Din~~~~~etv~~~~~~--g-~~~~y~cdis~~ 98 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-------------KLV-LWDINKQGNEETVKEIRKI--G-EAKAYTCDISDR 98 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-------------eEE-EEeccccchHHHHHHHHhc--C-ceeEEEecCCCH
Confidence 3456678889887 78999999987433 344 4576654444433222110 2 333345677777
Q ss_pred HHHHhcC
Q 003003 371 KSYERAA 377 (858)
Q Consensus 371 e~L~rA~ 377 (858)
+++.+..
T Consensus 99 eei~~~a 105 (300)
T KOG1201|consen 99 EEIYRLA 105 (300)
T ss_pred HHHHHHH
Confidence 7766543
No 249
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=48.12 E-value=2e+02 Score=31.22 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=30.3
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
+|.|+|.|..|..+...|.+.++ +|+++ +++++..+.+.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-------------~V~~~-~r~~~~~~~~~~ 41 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-------------DVTLV-ARRGAHLDALNE 41 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-------------eEEEE-ECChHHHHHHHH
Confidence 58999999999999999987654 56665 565555666543
No 250
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=47.99 E-value=38 Score=28.93 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=31.7
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEe
Q 003003 483 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIA 528 (858)
Q Consensus 483 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa 528 (858)
.|.|..|+...+. ..-.+++..||++. +.++.|++||++-++-
T Consensus 22 ~~~tv~~ll~~l~~~~~~v~v~vNg~iv---~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 22 KGMKVADILRAVGFNTESAIAKVNGKVA---LEDDPVKDGDYVEVIP 65 (70)
T ss_pred CCCcHHHHHHHcCCCCccEEEEECCEEC---CCCcCcCCCCEEEEEc
Confidence 3689999876554 33447777899964 4689999999997764
No 251
>PRK07791 short chain dehydrogenase; Provisional
Probab=47.90 E-value=82 Score=34.15 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=39.5
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh---------HHHHHHHHhhccccCCceEEEe
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR---------KQMDKLAENIAKDLNHIDILSK 363 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~---------~~me~l~~~~~~d~~~~~Vv~~ 363 (858)
...++|.|.+. .|..++++|.+.+. .++++ +.+. +..+.+.++... .+.++.+.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~-------------~vii~-~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 69 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGA-------------RVVVN-DIGVGLDGSASGGSAAQAVVDEIVA--AGGEAVAN 69 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEe-eCCccccccccchhHHHHHHHHHHh--cCCceEEE
Confidence 45778888865 89999999988654 45554 4332 344443332211 13345556
Q ss_pred cCCCCCHHHHHh
Q 003003 364 SCSLTLTKSYER 375 (858)
Q Consensus 364 ~Gd~~~~e~L~r 375 (858)
.+|.++++..++
T Consensus 70 ~~Dv~~~~~v~~ 81 (286)
T PRK07791 70 GDDIADWDGAAN 81 (286)
T ss_pred eCCCCCHHHHHH
Confidence 677777766554
No 252
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=47.71 E-value=83 Score=33.13 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..-++|.|.+ ..|..++++|.+.+. .++++ +++.+..+.+.+..... +.++.++..|.++.+.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~-------------~vv~~-~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~ 74 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA-------------SVVVS-DINADAANHVVDEIQQL--GGQAFACRCDITSEQE 74 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence 4556777765 489999999998654 45554 55555555443322111 3456666789888888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 75 i~~~ 78 (255)
T PRK06113 75 LSAL 78 (255)
T ss_pred HHHH
Confidence 7664
No 253
>PRK05599 hypothetical protein; Provisional
Probab=47.60 E-value=67 Score=33.86 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=41.6
Q ss_pred eEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
.++|+|.++ .|..++++|.+ +. .|+++ .++++.++++.++... ..+..+.++.+|.++++.++
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g~-------------~Vil~-~r~~~~~~~~~~~l~~-~~~~~~~~~~~Dv~d~~~v~ 65 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-GE-------------DVVLA-ARRPEAAQGLASDLRQ-RGATSVHVLSFDAQDLDTHR 65 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-CC-------------EEEEE-eCCHHHHHHHHHHHHh-ccCCceEEEEcccCCHHHHH
Confidence 478888876 89999999873 33 45554 6777667665544311 11123555678888877776
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 66 ~~ 67 (246)
T PRK05599 66 EL 67 (246)
T ss_pred HH
Confidence 54
No 254
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=47.19 E-value=86 Score=34.75 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=49.4
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..++|.|. |-.|..++++|.+.+.. ..|+++ +++....+.+.+.. .+.++.++.||.++.+.+
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~-----------~~V~~~-~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l 68 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNP-----------KKIIIY-SRDELKQWEMQQKF----PAPCLRFFIGDVRDKERL 68 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCC-----------cEEEEE-cCChhHHHHHHHHh----CCCcEEEEEccCCCHHHH
Confidence 45888886 67999999999875320 145555 55443333332222 122455678999999999
Q ss_pred HhcCccccCeEEEecC
Q 003003 374 ERAAANKARAIIILPT 389 (858)
Q Consensus 374 ~rA~i~~A~aVIIl~~ 389 (858)
.++ ++..+.||-++.
T Consensus 69 ~~~-~~~iD~Vih~Ag 83 (324)
T TIGR03589 69 TRA-LRGVDYVVHAAA 83 (324)
T ss_pred HHH-HhcCCEEEECcc
Confidence 876 456787666554
No 255
>PLN02253 xanthoxin dehydrogenase
Probab=47.00 E-value=82 Score=33.69 Aligned_cols=66 Identities=15% Similarity=0.263 Sum_probs=44.1
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++..+++.+... . +.++.+..+|.++++.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~-------------~v~~~-~~~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~ 80 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA-------------KVCIV-DLQDDLGQNVCDSLG-G--EPNVCFFHCDVTVEDD 80 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHhc-C--CCceEEEEeecCCHHH
Confidence 4568888875 489999999987654 56655 655555555444331 1 2356667899999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 81 ~~~~ 84 (280)
T PLN02253 81 VSRA 84 (280)
T ss_pred HHHH
Confidence 7765
No 256
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=46.63 E-value=1e+02 Score=29.74 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=21.0
Q ss_pred eEEEEccCchHHHHHHHHHhcCc
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~ 318 (858)
||+|+|.|..|..+++.|...+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv 23 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV 23 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
Confidence 68999999999999999998765
No 257
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.26 E-value=34 Score=33.88 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=32.5
Q ss_pred EEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHh
Q 003003 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN 350 (858)
Q Consensus 297 III~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~ 350 (858)
|.|||.|.-|..++..|...++ .|.+. .++++.++.+.+.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~-------------~V~l~-~~~~~~~~~i~~~ 41 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGH-------------EVTLW-GRDEEQIEEINET 41 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTE-------------EEEEE-TSCHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCC-------------EEEEE-eccHHHHHHHHHh
Confidence 7899999999999999998665 56554 7888888887754
No 258
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=46.19 E-value=80 Score=34.65 Aligned_cols=79 Identities=16% Similarity=0.076 Sum_probs=49.5
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh--HHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR--KQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~--~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
...|+|.|. |-.|..++++|.+.++ .|+++..... +.++.+.... .. ..++.++.||.+++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~-------------~V~~~~r~~~~~~~~~~~~~~~--~~-~~~~~~~~~Dl~~~ 68 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY-------------TVKATVRDLTDRKKTEHLLALD--GA-KERLKLFKADLLEE 68 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------------EEEEEECCCcchHHHHHHHhcc--CC-CCceEEEecCCCCc
Confidence 346888885 6799999999998655 4554443321 2333322110 00 12455568999999
Q ss_pred HHHHhcCccccCeEEEecC
Q 003003 371 KSYERAAANKARAIIILPT 389 (858)
Q Consensus 371 e~L~rA~i~~A~aVIIl~~ 389 (858)
+.++++ ++.++.||-++.
T Consensus 69 ~~~~~~-~~~~d~vih~A~ 86 (322)
T PLN02986 69 SSFEQA-IEGCDAVFHTAS 86 (322)
T ss_pred chHHHH-HhCCCEEEEeCC
Confidence 988776 345787776665
No 259
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=46.17 E-value=71 Score=32.89 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=39.0
Q ss_pred EEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 297 III~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
++|.|. |..|..++++|.+.+. .++++...+.+..+.+.+... + .+.++.++.+|.++++.+++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-------------~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~~~~ 65 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-------------KVIITYRSSEEGAEEVVEELK-A-YGVKALGVVCDVSDREDVKA 65 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-------------EEEEEeCCchhHHHHHHHHHH-h-cCCceEEEEecCCCHHHHHH
Confidence 467765 5689999999987654 455554333333333332221 1 13345566889988888766
Q ss_pred c
Q 003003 376 A 376 (858)
Q Consensus 376 A 376 (858)
+
T Consensus 66 ~ 66 (239)
T TIGR01830 66 V 66 (239)
T ss_pred H
Confidence 5
No 260
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=46.13 E-value=84 Score=32.47 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=40.7
Q ss_pred EEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 297 III~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
++|.|. +..|..++++|.+.+. .++++...+++..++..+.... .+.++.++.+|.++++.+++
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~-------------~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~ 67 (242)
T TIGR01829 3 ALVTGGMGGIGTAICQRLAKDGY-------------RVAANCGPNEERAEAWLQEQGA--LGFDFRVVEGDVSSFESCKA 67 (242)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-------------EEEEEeCCCHHHHHHHHHHHHh--hCCceEEEEecCCCHHHHHH
Confidence 567775 5689999999987654 4555543355545443332211 13456667899999887765
Q ss_pred c
Q 003003 376 A 376 (858)
Q Consensus 376 A 376 (858)
+
T Consensus 68 ~ 68 (242)
T TIGR01829 68 A 68 (242)
T ss_pred H
Confidence 4
No 261
>PRK07201 short chain dehydrogenase; Provisional
Probab=45.88 E-value=65 Score=39.32 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=46.8
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+ ..|..++++|.+.+. .|+++ .++++.++++.+..... +.++.++.+|.++.+.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~ 434 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-------------TVFLV-ARNGEALDELVAEIRAK--GGTAHAYTCDLTDSAA 434 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHH
Confidence 4578899885 489999999987654 56655 66666666654433111 3457777899999988
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 435 ~~~~ 438 (657)
T PRK07201 435 VDHT 438 (657)
T ss_pred HHHH
Confidence 8765
No 262
>PRK08303 short chain dehydrogenase; Provisional
Probab=45.62 E-value=75 Score=35.02 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=40.5
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCC----------hHHHHHHHHhhccccCCceEEE
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP----------RKQMDKLAENIAKDLNHIDILS 362 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~----------~~~me~l~~~~~~d~~~~~Vv~ 362 (858)
..+++|.|.+. .|..++++|.+.+. .|+++ +++ ++.++.+.+.... .+.++.+
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~-------------~Vv~~-~r~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~ 71 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGA-------------TVYVT-GRSTRARRSEYDRPETIEETAELVTA--AGGRGIA 71 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-ecccccccccccccchHHHHHHHHHh--cCCceEE
Confidence 46888999875 89999999987654 55554 443 2233333222211 1334555
Q ss_pred ecCCCCCHHHHHhc
Q 003003 363 KSCSLTLTKSYERA 376 (858)
Q Consensus 363 ~~Gd~~~~e~L~rA 376 (858)
+.+|.++++..+++
T Consensus 72 ~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 72 VQVDHLVPEQVRAL 85 (305)
T ss_pred EEcCCCCHHHHHHH
Confidence 67777777766655
No 263
>PRK08263 short chain dehydrogenase; Provisional
Probab=45.60 E-value=87 Score=33.48 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=42.4
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
-++|.|. +..|..++++|.+.+. .|+++ +++++.++.+.+.. +.++.+..+|.++++.++
T Consensus 5 ~vlItGasg~iG~~~a~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~ 65 (275)
T PRK08263 5 VWFITGASRGFGRAWTEAALERGD-------------RVVAT-ARDTATLADLAEKY-----GDRLLPLALDVTDRAAVF 65 (275)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHH
Confidence 4777776 4589999999987544 45544 67776666655432 223556689999998876
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 66 ~~ 67 (275)
T PRK08263 66 AA 67 (275)
T ss_pred HH
Confidence 64
No 264
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=45.55 E-value=79 Score=36.14 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=46.3
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
...++|+|.|..|...++.+...+. .|++ .|++++..+.+...+ +..+. .+..+.+.|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa-------------~V~v-~d~~~~~~~~l~~~~-----g~~v~---~~~~~~~~l 224 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA-------------TVTI-LDINIDRLRQLDAEF-----GGRIH---TRYSNAYEI 224 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC-------------eEEE-EECCHHHHHHHHHhc-----CceeE---eccCCHHHH
Confidence 3459999999999999999987543 4554 477777666665433 22222 234456777
Q ss_pred HhcCccccCeEEE
Q 003003 374 ERAAANKARAIII 386 (858)
Q Consensus 374 ~rA~i~~A~aVII 386 (858)
.++ +.+||.+|.
T Consensus 225 ~~~-l~~aDvVI~ 236 (370)
T TIGR00518 225 EDA-VKRADLLIG 236 (370)
T ss_pred HHH-HccCCEEEE
Confidence 766 678995544
No 265
>PRK06057 short chain dehydrogenase; Provisional
Probab=45.48 E-value=57 Score=34.38 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=41.4
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|+|. +..|..++++|.+.+. .|+++ ++++...+...+.. +. .+..+|.++++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~-----~~--~~~~~D~~~~~~ 65 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA-------------TVVVG-DIDPEAGKAAADEV-----GG--LFVPTDVTDEDA 65 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------------EEEEE-eCCHHHHHHHHHHc-----CC--cEEEeeCCCHHH
Confidence 457889998 4589999999987654 45554 66665555544322 11 234678888877
Q ss_pred HHhcC
Q 003003 373 YERAA 377 (858)
Q Consensus 373 L~rA~ 377 (858)
++++-
T Consensus 66 ~~~~~ 70 (255)
T PRK06057 66 VNALF 70 (255)
T ss_pred HHHHH
Confidence 66543
No 266
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=45.34 E-value=1.6e+02 Score=31.12 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=40.7
Q ss_pred CCCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCC-HHHHHhc
Q 003003 595 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN-FETLKDT 669 (858)
Q Consensus 595 ~~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td-~~~L~ea 669 (858)
...+++|+|. |..+..++++|.+ .|..|+.+...+ ++..... ..+..+.++.||.++ .+.|.++
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~---~g~~V~~~~R~~--~~~~~~~------~~~~~~~~~~~Dl~d~~~~l~~~ 81 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLA---KGFAVKAGVRDV--DKAKTSL------PQDPSLQIVRADVTEGSDKLVEA 81 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHh---CCCEEEEEecCH--HHHHHhc------ccCCceEEEEeeCCCCHHHHHHH
Confidence 3578999996 7789999999964 466777665422 2211110 112346779999998 4556554
No 267
>PRK07069 short chain dehydrogenase; Validated
Probab=45.30 E-value=86 Score=32.65 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=39.0
Q ss_pred EEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCC-hHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 297 IIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 297 III~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~-~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
++|.|.+ ..|..+++.|.+.+. .|+++ +++ ++..+.+.+.+........+.+..+|.++++.++
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 67 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGA-------------KVFLT-DINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQ 67 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHH
Confidence 6788764 589999999987654 56655 443 4445544433211111122334567888888776
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 68 ~~ 69 (251)
T PRK07069 68 AL 69 (251)
T ss_pred HH
Confidence 54
No 268
>PRK07060 short chain dehydrogenase; Provisional
Probab=45.23 E-value=66 Score=33.37 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=47.2
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..+++.|.+.+. .|+++ .++++..+++.... +. .++.+|.++.+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~-------------~V~~~-~r~~~~~~~~~~~~-----~~--~~~~~D~~~~~~ 67 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA-------------RVVAA-ARNAAALDRLAGET-----GC--EPLRLDVGDDAA 67 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh-----CC--eEEEecCCCHHH
Confidence 467899998 5799999999987654 55554 66666555544322 22 234688988887
Q ss_pred HHhcCc--cccCeEEEec
Q 003003 373 YERAAA--NKARAIIILP 388 (858)
Q Consensus 373 L~rA~i--~~A~aVIIl~ 388 (858)
++++-- ...+.+|-.+
T Consensus 68 v~~~~~~~~~~d~vi~~a 85 (245)
T PRK07060 68 IRAALAAAGAFDGLVNCA 85 (245)
T ss_pred HHHHHHHhCCCCEEEECC
Confidence 766532 2356544433
No 269
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=45.02 E-value=2.6e+02 Score=30.37 Aligned_cols=70 Identities=6% Similarity=0.021 Sum_probs=44.5
Q ss_pred CeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 295 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 295 ~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
-.|-|+|+|..|..+++.|..... +-.++.+.+.+++..+++.+.+ +.. .-..+.+.|.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~-----------~~el~aV~dr~~~~a~~~a~~~-----g~~-----~~~~~~eell 65 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLP-----------GLTLSAVAVRDPQRHADFIWGL-----RRP-----PPVVPLDQLA 65 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCC-----------CeEEEEEECCCHHHHHHHHHhc-----CCC-----cccCCHHHHh
Confidence 468999999999999999876311 0156656788877666655432 110 0124566663
Q ss_pred hcCccccCeEEEecC
Q 003003 375 RAAANKARAIIILPT 389 (858)
Q Consensus 375 rA~i~~A~aVIIl~~ 389 (858)
.++|.|++.++
T Consensus 66 ----~~~D~Vvi~tp 76 (271)
T PRK13302 66 ----THADIVVEAAP 76 (271)
T ss_pred ----cCCCEEEECCC
Confidence 45798877665
No 270
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=44.77 E-value=39 Score=32.63 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
+=.|-|+|.|++|..|.+.|...++ .|+-+..++.+.-+++.+.. |+ ....++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-------------~v~~v~srs~~sa~~a~~~~-------------~~-~~~~~~ 62 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-------------EVVGVYSRSPASAERAAAFI-------------GA-GAILDL 62 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-------------EEEEESSCHH-HHHHHHC---------------TT------T
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-------------eEEEEEeCCccccccccccc-------------cc-cccccc
Confidence 5579999999999999999998765 56666566554444443211 11 111122
Q ss_pred HhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHH---HHhcCC
Q 003003 374 ERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCEL---LKSLSG 436 (858)
Q Consensus 374 ~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~---l~~ag~ 436 (858)
..+ +++|+.++|..+ +| ....+..-|+-.... ....+|+...=.-..+. ++..|+
T Consensus 63 ~~~-~~~aDlv~iavp-Dd----aI~~va~~La~~~~~--~~g~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 63 EEI-LRDADLVFIAVP-DD----AIAEVAEQLAQYGAW--RPGQIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp TGG-GCC-SEEEE-S--CC----HHHHHHHHHHCC--S---TT-EEEES-SS--GGGGHHHHHTT-
T ss_pred ccc-cccCCEEEEEec-hH----HHHHHHHHHHHhccC--CCCcEEEECCCCChHHhhhhHHHCCC
Confidence 222 578996666554 32 234444445533211 23457776655544443 444554
No 271
>PLN02583 cinnamoyl-CoA reductase
Probab=44.64 E-value=93 Score=33.94 Aligned_cols=77 Identities=9% Similarity=0.001 Sum_probs=48.1
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCC-ChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL-PRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~-~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
+.+++|.|. |-.|..++++|.+.++ .|+++... ++...+......... +.++.++.||.++.+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-------------~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~ 70 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-------------TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYH 70 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-------------EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHH
Confidence 568999997 5699999999998665 46555332 233332222221111 224555689999999
Q ss_pred HHHhcCccccCeEEE
Q 003003 372 SYERAAANKARAIII 386 (858)
Q Consensus 372 ~L~rA~i~~A~aVII 386 (858)
.+.++ +..++.++-
T Consensus 71 ~~~~~-l~~~d~v~~ 84 (297)
T PLN02583 71 SILDA-LKGCSGLFC 84 (297)
T ss_pred HHHHH-HcCCCEEEE
Confidence 98776 445676653
No 272
>PRK06196 oxidoreductase; Provisional
Probab=43.94 E-value=73 Score=34.98 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=43.2
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ -.|..++++|.+.+. .|+++ .++++..+++.++. .+ +.++.+|.++.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-------------~Vv~~-~R~~~~~~~~~~~l----~~--v~~~~~Dl~d~~~ 85 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-------------HVIVP-ARRPDVAREALAGI----DG--VEVVMLDLADLES 85 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh----hh--CeEEEccCCCHHH
Confidence 3578888885 589999999988654 55554 66666565544322 11 4456789999888
Q ss_pred HHhcC
Q 003003 373 YERAA 377 (858)
Q Consensus 373 L~rA~ 377 (858)
++++-
T Consensus 86 v~~~~ 90 (315)
T PRK06196 86 VRAFA 90 (315)
T ss_pred HHHHH
Confidence 77653
No 273
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.74 E-value=97 Score=32.74 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=38.9
Q ss_pred CCeEEEEccC---chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 294 SDHIIVCGVN---SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 294 ~~HIII~G~~---~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
..+++|.|.+ ..|..++++|.+.+. .|++. .+++ ..++..++.. +.++.+...|.+++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~-------------~Vi~~-~r~~-~~~~~~~~~~----~~~~~~~~~Dl~~~ 67 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA-------------TVIYT-YQND-RMKKSLQKLV----DEEDLLVECDVASD 67 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC-------------EEEEe-cCch-HHHHHHHhhc----cCceeEEeCCCCCH
Confidence 4578888986 699999999998654 55554 5553 2332222211 12344556777777
Q ss_pred HHHHhc
Q 003003 371 KSYERA 376 (858)
Q Consensus 371 e~L~rA 376 (858)
++.+++
T Consensus 68 ~~v~~~ 73 (252)
T PRK06079 68 ESIERA 73 (252)
T ss_pred HHHHHH
Confidence 766553
No 274
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=43.71 E-value=45 Score=37.99 Aligned_cols=64 Identities=14% Similarity=-0.015 Sum_probs=41.6
Q ss_pred EEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 599 ILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 599 vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
|+|+|.|..+..+++.|.+... ..++++.+. ..++.+.+.+ .+...++.++.-|..|.+.|++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~-~~~v~va~r--~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~l~~~ 64 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP-FEEVTVADR--NPEKAERLAE----KLLGDRVEAVQVDVNDPESLAEL 64 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC-E-EEEEEES--SHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCC-CCcEEEEEC--CHHHHHHHHh----hccccceeEEEEecCCHHHHHHH
Confidence 7899999999999999976532 226777775 3344333332 22456778899999999999987
No 275
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.55 E-value=1.1e+02 Score=31.87 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=46.8
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+. .|..++++|.+.+. .+++......+..+........ .+.++.+..+|.++++.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 70 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS-------------LVVVNAKKRAEEMNETLKMVKE--NGGEGIGVLADVSTREG 70 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEEeCCChHHHHHHHHHHHH--cCCeeEEEEeccCCHHH
Confidence 35788888754 99999999987554 4555444443434332221111 13345566788888887
Q ss_pred HHhcC------ccccCeEEEec
Q 003003 373 YERAA------ANKARAIIILP 388 (858)
Q Consensus 373 L~rA~------i~~A~aVIIl~ 388 (858)
+.++- ....+.+|-.+
T Consensus 71 ~~~~~~~~~~~~~~~d~vi~~a 92 (252)
T PRK06077 71 CETLAKATIDRYGVADILVNNA 92 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 76652 12456655544
No 276
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=43.47 E-value=54 Score=33.94 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=23.4
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
.+-||+|+|.|..|..+++.|...+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV 43 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI 43 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC
Confidence 46799999999999999999998765
No 277
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=43.36 E-value=74 Score=33.43 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHh
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKD 668 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~e 668 (858)
..++|+|+|+|+.+..=++.|. ..|..+++++....+|..... .+..+.++. +..+.+.|..
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll---~~ga~v~Vvs~~~~~el~~~~--------~~~~i~~~~-~~~~~~~~~~ 72 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLL---KAGADVTVVSPEFEPELKALI--------EEGKIKWIE-REFDAEDLDD 72 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hcCCEEEEEcCCccHHHHHHH--------HhcCcchhh-cccChhhhcC
Confidence 3578999999999988888885 468889999975423322221 122355566 5555554443
No 278
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=43.36 E-value=1.4e+02 Score=30.98 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=23.3
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
.+-+|+|+|.|..|..+++.|...+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV 45 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC
Confidence 47799999999999999999998765
No 279
>PRK07832 short chain dehydrogenase; Provisional
Probab=43.24 E-value=86 Score=33.44 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=40.6
Q ss_pred eEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
.++|.|.+ ..|..++++|.+.+. .|+++ .++++.++...++... ..+..+.+..+|.++++.++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-------------~vv~~-~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~ 66 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-------------ELFLT-DRDADGLAQTVADARA-LGGTVPEHRALDISDYDAVA 66 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh-cCCCcceEEEeeCCCHHHHH
Confidence 47888875 589999999987554 45554 6666555554433211 11122344578888887766
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 67 ~~ 68 (272)
T PRK07832 67 AF 68 (272)
T ss_pred HH
Confidence 53
No 280
>PRK07074 short chain dehydrogenase; Provisional
Probab=43.09 E-value=82 Score=33.09 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=49.7
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
-++|.|. +..|..++++|.+.+. .|+++ +++++..+.+.+.. .+.++..+.+|..+.+.++
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~-------------~v~~~-~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~ 65 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGD-------------RVLAL-DIDAAALAAFADAL----GDARFVPVACDLTDAASLA 65 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHH
Confidence 4777777 5699999999987544 56555 67666666554432 1334666789999999887
Q ss_pred hcCcc------ccCeEEEecC
Q 003003 375 RAAAN------KARAIIILPT 389 (858)
Q Consensus 375 rA~i~------~A~aVIIl~~ 389 (858)
++-.+ ..+.+|-.+.
T Consensus 66 ~~~~~~~~~~~~~d~vi~~ag 86 (257)
T PRK07074 66 AALANAAAERGPVDVLVANAG 86 (257)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 64432 3576555443
No 281
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=43.06 E-value=32 Score=29.70 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=27.1
Q ss_pred cEEEEeccccHHHHHHHHhcccCCCceEEEEcCC
Q 003003 598 RILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 631 (858)
Q Consensus 598 ~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~ 631 (858)
|++|+|.|..+.+++..|.+ .|.++++++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~---~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE---LGKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH---TTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH---hCcEEEEEecc
Confidence 68999999999999999975 47889999864
No 282
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=42.79 E-value=37 Score=31.14 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCC
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 631 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~ 631 (858)
..+++||+|+|+.+..-++.|. ..|..|++++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll---~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLL---EAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHC---CCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hCCCEEEEECCc
Confidence 3589999999999999999995 557889999974
No 283
>PLN00203 glutamyl-tRNA reductase
Probab=42.79 E-value=2.5e+02 Score=33.71 Aligned_cols=125 Identities=14% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
....++|+|.|..+..+++.|...+. ..|+|. +++.+..+.+.+.+. +..+.+ ...++
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~------------~~V~V~-nRs~era~~La~~~~----g~~i~~-----~~~~d 322 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGC------------TKMVVV-NRSEERVAALREEFP----DVEIIY-----KPLDE 322 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCC------------CeEEEE-eCCHHHHHHHHHHhC----CCceEe-----ecHhh
Confidence 35689999999999999999987543 246654 777777777665431 222221 12334
Q ss_pred HHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHH-HHHhcCCCeEEehH
Q 003003 373 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCE-LLKSLSGLKVEPVE 443 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~-~l~~ag~d~Vi~~~ 443 (858)
+.. .+.+|+.||. ++.....-.+.+.+..+...+... .+..+++=+.-|.+.+ .+....+-.++..+
T Consensus 323 l~~-al~~aDVVIs-AT~s~~pvI~~e~l~~~~~~~~~~--~~~~~~IDLAvPRdIdp~v~~l~~v~lydiD 390 (519)
T PLN00203 323 MLA-CAAEADVVFT-STSSETPLFLKEHVEALPPASDTV--GGKRLFVDISVPRNVGACVSELESARVYNVD 390 (519)
T ss_pred HHH-HHhcCCEEEE-ccCCCCCeeCHHHHHHhhhccccc--CCCeEEEEeCCCCCCccccccCCCCeEEEec
Confidence 433 3678996544 443321122344444433322211 1112455666665543 23333333555554
No 284
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.56 E-value=1e+02 Score=34.39 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=47.4
Q ss_pred CCC-eEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 293 ESD-HIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 293 ~~~-HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
.++ -+||+|.+. .|...+++|...+. .|| ++.++.+.-++..+.........++.+.+.|.++.
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga-------------~Vv-~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl 98 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA-------------HVV-LACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSL 98 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC-------------EEE-EEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCH
Confidence 344 667788876 89999999998653 455 55777655555554433333456677778888888
Q ss_pred HHHHhcC
Q 003003 371 KSYERAA 377 (858)
Q Consensus 371 e~L~rA~ 377 (858)
+..++..
T Consensus 99 ~SV~~fa 105 (314)
T KOG1208|consen 99 KSVRKFA 105 (314)
T ss_pred HHHHHHH
Confidence 7776654
No 285
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=42.34 E-value=1e+02 Score=32.52 Aligned_cols=66 Identities=20% Similarity=0.083 Sum_probs=40.1
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+. .|..++++|.+.+. .++++ .++ +..+++.+... .. +.++.+..+|.++.+.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~v~~~-~~~-~~~~~~~~~~~-~~-~~~~~~~~~D~~~~~~ 77 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA-------------DIIIT-THG-TNWDETRRLIE-KE-GRKVTFVQVDLTKPES 77 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCC-cHHHHHHHHHH-hc-CCceEEEEcCCCCHHH
Confidence 45678888854 89999999988655 45554 443 22333222211 11 3345666889998887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 78 i~~~ 81 (258)
T PRK06935 78 AEKV 81 (258)
T ss_pred HHHH
Confidence 7654
No 286
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=41.83 E-value=1.3e+02 Score=33.59 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=64.8
Q ss_pred cEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhcccccccc
Q 003003 598 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNS 676 (858)
Q Consensus 598 ~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~~a 676 (858)
.||+.|+ |-.+...+.+|. ..|.+++|+++...-.++. +....+.|+.||-.|++.|.+.--+
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll---~~G~~vvV~DNL~~g~~~~---------v~~~~~~f~~gDi~D~~~L~~vf~~---- 65 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLL---KTGHEVVVLDNLSNGHKIA---------LLKLQFKFYEGDLLDRALLTAVFEE---- 65 (329)
T ss_pred eEEEecCcchhHHHHHHHHH---HCCCeEEEEecCCCCCHHH---------hhhccCceEEeccccHHHHHHHHHh----
Confidence 5788876 457888999996 4788999999854333321 2222267899999999999986322
Q ss_pred ccCCCCCCcEEEEEeCCCccCCC---CChhhHHHHHHHHHHHHHhhhhCCC
Q 003003 677 FKDGEELPLSIVVISDREWLLGD---PSRADKQSAYSLLLAENICNKLGVK 724 (858)
Q Consensus 677 ~~~d~~~~~sivILtd~d~~~~~---~~~aDa~~l~~~L~~r~l~~~~g~~ 724 (858)
.+ |.+|+=.+...-.+++ |.+==..|+...|.+=+-+.+.|++
T Consensus 66 ~~-----idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~ 111 (329)
T COG1087 66 NK-----IDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK 111 (329)
T ss_pred cC-----CCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCC
Confidence 11 2266666643322232 2222245666666555556666664
No 287
>PRK07806 short chain dehydrogenase; Provisional
Probab=41.79 E-value=59 Score=33.95 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=42.7
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~-~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+ ..+..++++|.+ .|..|.++...+. ++.+.+. ++ +-...++.++.+|.++.+.++++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~---~G~~V~~~~r~~~-~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~ 74 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAG---AGAHVVVNYRQKA-PRANKVVAEI---EAAGGRASAVGADLTDEESVAAL 74 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHH---CCCEEEEEeCCch-HhHHHHHHHH---HhcCCceEEEEcCCCCHHHHHHH
Confidence 3689999984 679999999963 5777777654322 1111111 11 00123467899999999988764
No 288
>PRK05855 short chain dehydrogenase; Validated
Probab=41.76 E-value=91 Score=37.02 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=46.7
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...+++|.|.+ -.|..++++|.+.+. .|+++ +++++..+++.+.... .+.++.++.+|.++++
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~ 377 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-------------EVVAS-DIDEAAAERTAELIRA--AGAVAHAYRVDVSDAD 377 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHH
Confidence 46788899874 589999999987654 55544 7776666654433211 1345666789999988
Q ss_pred HHHhcC
Q 003003 372 SYERAA 377 (858)
Q Consensus 372 ~L~rA~ 377 (858)
.++++-
T Consensus 378 ~~~~~~ 383 (582)
T PRK05855 378 AMEAFA 383 (582)
T ss_pred HHHHHH
Confidence 876653
No 289
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=41.69 E-value=1.3e+02 Score=31.74 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=40.2
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCC-h-HHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-R-KQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~-~-~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
..+++|+|.+ ..|..++++|.+.+. .|+++ +.. . +..+++.+ . +.++.+..+|.++.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~-------------~vv~~-~~~~~~~~~~~~~~-~-----~~~~~~~~~Dl~~~ 69 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC-------------DIVGI-NIVEPTETIEQVTA-L-----GRRFLSLTADLRKI 69 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEe-cCcchHHHHHHHHh-c-----CCeEEEEECCCCCH
Confidence 4578888886 489999999988654 45554 432 2 22222221 1 34566678888888
Q ss_pred HHHHhc
Q 003003 371 KSYERA 376 (858)
Q Consensus 371 e~L~rA 376 (858)
+.++++
T Consensus 70 ~~~~~~ 75 (253)
T PRK08993 70 DGIPAL 75 (253)
T ss_pred HHHHHH
Confidence 777665
No 290
>PRK08264 short chain dehydrogenase; Validated
Probab=41.68 E-value=73 Score=32.98 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=47.0
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|. |..|..++++|.+.+. ..|++ ..++.+..++ . +.++.++.+|.++.+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~------------~~V~~-~~r~~~~~~~----~-----~~~~~~~~~D~~~~~~ 63 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA------------AKVYA-AARDPESVTD----L-----GPRVVPLQLDVTDPAS 63 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc------------ccEEE-EecChhhhhh----c-----CCceEEEEecCCCHHH
Confidence 567899986 6699999999987543 13444 4665544332 1 3456667899999988
Q ss_pred HHhcCcc--ccCeEEEec
Q 003003 373 YERAAAN--KARAIIILP 388 (858)
Q Consensus 373 L~rA~i~--~A~aVIIl~ 388 (858)
++++--. ..+.+|-.+
T Consensus 64 ~~~~~~~~~~id~vi~~a 81 (238)
T PRK08264 64 VAAAAEAASDVTILVNNA 81 (238)
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 7765432 356554444
No 291
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.29 E-value=1e+02 Score=32.38 Aligned_cols=62 Identities=10% Similarity=0.197 Sum_probs=41.1
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|. +..|..++++|.+.+. .|+++..++++..+.+.+ .++.++.+|.++++.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~-------------~v~~~~~~~~~~~~~l~~--------~~~~~~~~Dl~~~~~ 65 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA-------------KVAVLYNSAENEAKELRE--------KGVFTIKCDVGNRDQ 65 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------EEEEEeCCcHHHHHHHHh--------CCCeEEEecCCCHHH
Confidence 356788887 4589999999988654 466554444444444332 124456889999988
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 66 ~~~~ 69 (255)
T PRK06463 66 VKKS 69 (255)
T ss_pred HHHH
Confidence 8775
No 292
>PRK04017 hypothetical protein; Provisional
Probab=41.12 E-value=1.9e+02 Score=28.14 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHhcCccccCeE
Q 003003 305 HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAI 384 (858)
Q Consensus 305 ~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~rA~i~~A~aV 384 (858)
....++++|.+.... | ..|||=.-+|.+.+.++- . ..+++...|.+....+ ++. +.+.+-|
T Consensus 8 ~~~e~i~~L~e~s~~----g------~vIVVEGk~D~~~L~~lG----v---~~~iI~t~g~~~~~~~-e~i-a~~~r~V 68 (132)
T PRK04017 8 RFEEIIEELKEFSEA----G------APIIVEGKRDVESLRKLG----V---EGEIIKVSRTPLAEIA-ELI-ASRGKEV 68 (132)
T ss_pred HHHHHHHHHHHhcCC----C------CEEEEeCccHHHHHHHcC----C---CccEEEECCeecchHH-HHH-HhcCCeE
Confidence 346778888886552 2 233332234666666541 1 1246666888887776 666 5677888
Q ss_pred EEecCCC
Q 003003 385 IILPTKG 391 (858)
Q Consensus 385 IIl~~~~ 391 (858)
||+++.+
T Consensus 69 IILTD~D 75 (132)
T PRK04017 69 IILTDFD 75 (132)
T ss_pred EEEECCC
Confidence 8888644
No 293
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=40.99 E-value=1.4e+02 Score=33.79 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.7
Q ss_pred cCCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 292 LESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 292 ~~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
..+-+|+|+|.|..|..+++.|...+.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGv 48 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGV 48 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 347789999999999999999998765
No 294
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=40.74 E-value=1.2e+02 Score=31.01 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=48.3
Q ss_pred EEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 297 III~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
|+|+|. |-.|..++++|.+.+. .|+.+...++.......+ .++.+..+|..+.+.+++
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-------------~v~~~~~~~~~~~~~~~~--------~~~~~~~~dl~~~~~~~~ 59 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-------------EVIVLSRSSNSESFEEKK--------LNVEFVIGDLTDKEQLEK 59 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-------------EEEEEESCSTGGHHHHHH--------TTEEEEESETTSHHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-------------cccccccccccccccccc--------ceEEEEEeeccccccccc
Confidence 678885 5699999999998765 455555554433222111 145566899999988887
Q ss_pred cCccc-cCeEEEecCC
Q 003003 376 AAANK-ARAIIILPTK 390 (858)
Q Consensus 376 A~i~~-A~aVIIl~~~ 390 (858)
+--.. .+.|+-++..
T Consensus 60 ~~~~~~~d~vi~~a~~ 75 (236)
T PF01370_consen 60 LLEKANIDVVIHLAAF 75 (236)
T ss_dssp HHHHHTESEEEEEBSS
T ss_pred cccccCceEEEEeecc
Confidence 74333 4887777764
No 295
>PRK04148 hypothetical protein; Provisional
Probab=40.71 E-value=70 Score=31.21 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=38.2
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
..+++++|.| .|..++..|.+.++ +|+.+ |.+++..+...+. +.+++ .+|..++
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~-------------~ViaI-Di~~~aV~~a~~~------~~~~v--~dDlf~p 70 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF-------------DVIVI-DINEKAVEKAKKL------GLNAF--VDDLFNP 70 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHh------CCeEE--ECcCCCC
Confidence 4679999999 88889999987554 55544 8888877776542 34443 5776654
No 296
>PRK12829 short chain dehydrogenase; Provisional
Probab=40.64 E-value=57 Score=34.30 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=43.6
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+. .+..+++.|.+ .|..|.++... . +..+.+.. ...+.++..+.+|.+|.+.++++
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~---~g~~V~~~~r~-~-~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~ 76 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAE---AGARVHVCDVS-E-AALAATAA----RLPGAKVTATVADVADPAQVERV 76 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCC-H-HHHHHHHH----HHhcCceEEEEccCCCHHHHHHH
Confidence 47899999864 68899999964 47778887752 2 22222211 12222567799999999988765
No 297
>PRK10637 cysG siroheme synthase; Provisional
Probab=40.46 E-value=1.1e+02 Score=36.05 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=46.3
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...+++|+|.|+++..=++.|.+++. .|+|+++.-.++++.+.+. -++-++..+. .+++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga-------------~v~visp~~~~~~~~l~~~-------~~i~~~~~~~-~~~d 69 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGA-------------RLTVNALAFIPQFTAWADA-------GMLTLVEGPF-DESL 69 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------------EEEEEcCCCCHHHHHHHhC-------CCEEEEeCCC-ChHH
Confidence 47799999999999999999988654 6888877644556655431 2344445444 3455
Q ss_pred HHhcCccccCeEEEecCC
Q 003003 373 YERAAANKARAIIILPTK 390 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~ 390 (858)
| +.|.. ++++++
T Consensus 70 l-----~~~~l-v~~at~ 81 (457)
T PRK10637 70 L-----DTCWL-AIAATD 81 (457)
T ss_pred h-----CCCEE-EEECCC
Confidence 4 56664 444543
No 298
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.41 E-value=1.3e+02 Score=31.07 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=43.7
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|.+ ..|..++++|.+.+. .|+++ .++++..+.+....... .++.++.+|.++++.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~ 67 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-------------QVCIN-SRNENKLKRMKKTLSKY---GNIHYVVGDVSSTES 67 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHH
Confidence 4588999885 489999999987654 45554 66666555543322111 135556899999888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 68 ~~~~ 71 (238)
T PRK05786 68 ARNV 71 (238)
T ss_pred HHHH
Confidence 7764
No 299
>PRK08278 short chain dehydrogenase; Provisional
Probab=40.05 E-value=1.1e+02 Score=32.67 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=40.6
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChH-------HHHHHHHhhccccCCceEEEecC
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRK-------QMDKLAENIAKDLNHIDILSKSC 365 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~-------~me~l~~~~~~d~~~~~Vv~~~G 365 (858)
...++|.|.+. .|..++++|.+.+. .|+++ .++.+ .++++.+.... .+.++.+..+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~ 69 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA-------------NIVIA-AKTAEPHPKLPGTIHTAAEEIEA--AGGQALPLVG 69 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------------EEEEE-ecccccccchhhHHHHHHHHHHh--cCCceEEEEe
Confidence 35788998754 89999999987554 56655 43221 12222222111 1345666678
Q ss_pred CCCCHHHHHhc
Q 003003 366 SLTLTKSYERA 376 (858)
Q Consensus 366 d~~~~e~L~rA 376 (858)
|.++++.++++
T Consensus 70 D~~~~~~i~~~ 80 (273)
T PRK08278 70 DVRDEDQVAAA 80 (273)
T ss_pred cCCCHHHHHHH
Confidence 88888877654
No 300
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=39.91 E-value=3.2e+02 Score=31.77 Aligned_cols=119 Identities=16% Similarity=0.242 Sum_probs=63.1
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...+++|+|.|..|..+++.|...+. ..|++. +++.+..+.+.+.+ +... ...++
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~------------~~V~v~-~rs~~ra~~la~~~-----g~~~-------i~~~~ 233 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGV------------GKILIA-NRTYERAEDLAKEL-----GGEA-------VKFED 233 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCC------------CEEEEE-eCCHHHHHHHHHHc-----CCeE-------eeHHH
Confidence 35789999999999999999987542 246554 77665555554433 2111 12345
Q ss_pred HHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCc-EEEEEcCcccHHH-HHhcCCCeEEehHH
Q 003003 373 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVP-TIVEVSNPNTCEL-LKSLSGLKVEPVEN 444 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~-iIaev~d~~~~~~-l~~ag~d~Vi~~~~ 444 (858)
+.++ +..|+.||. ++.....-.+.+.+...+.-+ ..| +++=+..|.+.+. .....+-.++..++
T Consensus 234 l~~~-l~~aDvVi~-aT~s~~~ii~~e~l~~~~~~~------~~~~~viDla~Prdid~~v~~l~~v~l~~vDd 299 (417)
T TIGR01035 234 LEEY-LAEADIVIS-STGAPHPIVSKEDVERALRER------TRPLFIIDIAVPRDVDPAVARLEGVFLYDVDD 299 (417)
T ss_pred HHHH-HhhCCEEEE-CCCCCCceEcHHHHHHHHhcC------CCCeEEEEeCCCCCCChhhcCcCCeEEEEHHH
Confidence 5433 567995544 443321122334343322211 123 5666667666542 32222334565553
No 301
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.85 E-value=1e+02 Score=32.80 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=39.2
Q ss_pred CCeEEEEcc---CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCC--hHHHHHHHHhhccccCCceEEEecCCCC
Q 003003 294 SDHIIVCGV---NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP--RKQMDKLAENIAKDLNHIDILSKSCSLT 368 (858)
Q Consensus 294 ~~HIII~G~---~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~--~~~me~l~~~~~~d~~~~~Vv~~~Gd~~ 368 (858)
..+++|.|. +..|..++++|.+.+. .|++ .+++ ++..+++.++. +.++.+...|.+
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~-------------~v~l-~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~ 67 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA-------------EVVL-TGFGRALRLTERIAKRL-----PEPAPVLELDVT 67 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC-------------EEEE-ecCccchhHHHHHHHhc-----CCCCcEEeCCCC
Confidence 457889996 5689999999987554 4554 4543 33445544322 113344567777
Q ss_pred CHHHHHhc
Q 003003 369 LTKSYERA 376 (858)
Q Consensus 369 ~~e~L~rA 376 (858)
+++..+++
T Consensus 68 ~~~~i~~~ 75 (256)
T PRK07889 68 NEEHLASL 75 (256)
T ss_pred CHHHHHHH
Confidence 77766554
No 302
>PRK10637 cysG siroheme synthase; Provisional
Probab=39.84 E-value=1.2e+02 Score=35.64 Aligned_cols=57 Identities=11% Similarity=-0.083 Sum_probs=38.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCC
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLN 662 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td 662 (858)
..++|||+|+|+.+..=++.|.+ .|..|++++..-.+|..+. . ..-++.++..+...
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~---~ga~v~visp~~~~~~~~l-~-------~~~~i~~~~~~~~~ 67 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLD---AGARLTVNALAFIPQFTAW-A-------DAGMLTLVEGPFDE 67 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHH-H-------hCCCEEEEeCCCCh
Confidence 35899999999998887777754 4678999986433343221 1 12346678777653
No 303
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=39.84 E-value=1.6e+02 Score=38.37 Aligned_cols=66 Identities=12% Similarity=-0.009 Sum_probs=44.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhcccCCCc-------------eEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCC
Q 003003 594 GPKERILLLGWRPDVVEMIEEYDNYLGPGS-------------VLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNP 660 (858)
Q Consensus 594 ~~~~~vLI~Gw~~~~~~li~eL~~~~~~gs-------------~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~ 660 (858)
...++|+|+|-|+.+...++.|.+. ++. .|++.+. ..++.+.+.+ .+++ +..+.-|.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~----~~~~--~~~v~lDv 636 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE----GIEN--AEAVQLDV 636 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC--CHHHHHHHHH----hcCC--CceEEeec
Confidence 4578999999999999999999653 232 3555553 2334444432 2333 34588899
Q ss_pred CCHHHHHhc
Q 003003 661 LNFETLKDT 669 (858)
Q Consensus 661 td~~~L~ea 669 (858)
+|.+.|.++
T Consensus 637 ~D~e~L~~~ 645 (1042)
T PLN02819 637 SDSESLLKY 645 (1042)
T ss_pred CCHHHHHHh
Confidence 999999885
No 304
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=39.75 E-value=53 Score=31.20 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=19.6
Q ss_pred eEEEEcc-CchHHHHHHHHHhcC
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYH 317 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~ 317 (858)
+|+|.|+ |+.|..+++.+.+..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~ 24 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESP 24 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST
T ss_pred EEEEECCCCHHHHHHHHHHHhcC
Confidence 5899999 999999999998843
No 305
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=39.71 E-value=98 Score=34.44 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=44.0
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCC-CHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLT-LTKSY 373 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~-~~e~L 373 (858)
+|+|.|. |-.|..|+++|.+.+. ..|+.+ ++..+....+.. ...+-++.||.. +.+.+
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~------------~~V~~~-~r~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~ 62 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTD------------WEVYGM-DMQTDRLGDLVN-------HPRMHFFEGDITINKEWI 62 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCC------------CeEEEE-eCcHHHHHHhcc-------CCCeEEEeCCCCCCHHHH
Confidence 5999997 8899999999987421 145655 454432222211 112445579997 66677
Q ss_pred HhcCccccCeEEEe
Q 003003 374 ERAAANKARAIIIL 387 (858)
Q Consensus 374 ~rA~i~~A~aVIIl 387 (858)
.++ ++.++.||=+
T Consensus 63 ~~~-~~~~d~ViH~ 75 (347)
T PRK11908 63 EYH-VKKCDVILPL 75 (347)
T ss_pred HHH-HcCCCEEEEC
Confidence 654 4578866533
No 306
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=39.67 E-value=1.2e+02 Score=32.00 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=40.6
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+. .|..++++|.+.+. .|+++ ++++. .+++.++... .+.++.+..+|.++.+.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~-------------~v~~~-~r~~~-~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 70 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA-------------RVVLV-DRSEL-VHEVAAELRA--AGGEALALTADLETYAG 70 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCchH-HHHHHHHHHh--cCCeEEEEEEeCCCHHH
Confidence 45788888854 89999999988654 45554 65432 2222222211 13456666788888776
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 71 ~~~~ 74 (260)
T PRK12823 71 AQAA 74 (260)
T ss_pred HHHH
Confidence 6544
No 307
>PRK09414 glutamate dehydrogenase; Provisional
Probab=39.66 E-value=1.2e+02 Score=35.75 Aligned_cols=44 Identities=11% Similarity=0.375 Sum_probs=33.1
Q ss_pred cCCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeC----------CChHHHHHHH
Q 003003 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSD----------LPRKQMDKLA 348 (858)
Q Consensus 292 ~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d----------~~~~~me~l~ 348 (858)
.+.-+|+|.|+|.+|..+++.|.+.+. .||.++| .|.+++.+..
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L~~~Ga-------------kVVavsDs~G~iyn~~GLD~~~L~~~k 283 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKAQQLGA-------------KVVTCSDSSGYVYDEEGIDLEKLKEIK 283 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-------------EEEEEEcCCceEECCCCCCHHHHHHHH
Confidence 346689999999999999999987543 6777778 5666555443
No 308
>PRK06720 hypothetical protein; Provisional
Probab=39.58 E-value=1.5e+02 Score=29.69 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=40.6
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+. .|..++++|.+.+. .|++. +++.+..+...++... .+.++.+...|.++.+.
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G~-------------~V~l~-~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~ 79 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQGA-------------KVIVT-DIDQESGQATVEEITN--LGGEALFVSYDMEKQGD 79 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC-------------EEEEE-ECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHH
Confidence 45778888875 89999999987544 55554 6665555444332211 12334445677777776
Q ss_pred HHh
Q 003003 373 YER 375 (858)
Q Consensus 373 L~r 375 (858)
+++
T Consensus 80 v~~ 82 (169)
T PRK06720 80 WQR 82 (169)
T ss_pred HHH
Confidence 655
No 309
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=39.55 E-value=1.1e+02 Score=35.54 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=46.2
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..+++|+|.|..+..+++.|...+. ..|.|. .+..+..+.+.+.+ +. +.....++|
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~------------~~I~V~-nRt~~ra~~La~~~-----~~------~~~~~~~~l 236 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP------------KQIMLA-NRTIEKAQKITSAF-----RN------ASAHYLSEL 236 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC------------CEEEEE-CCCHHHHHHHHHHh-----cC------CeEecHHHH
Confidence 5589999999999999999987544 256654 77666566665543 10 122234555
Q ss_pred HhcCccccCeEEEecCCC
Q 003003 374 ERAAANKARAIIILPTKG 391 (858)
Q Consensus 374 ~rA~i~~A~aVIIl~~~~ 391 (858)
..+ +.+|+. ||.++..
T Consensus 237 ~~~-l~~aDi-VI~aT~a 252 (414)
T PRK13940 237 PQL-IKKADI-IIAAVNV 252 (414)
T ss_pred HHH-hccCCE-EEECcCC
Confidence 333 677994 5555543
No 310
>PRK06924 short chain dehydrogenase; Provisional
Probab=39.19 E-value=68 Score=33.53 Aligned_cols=64 Identities=8% Similarity=0.011 Sum_probs=42.8
Q ss_pred CcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
++++|.|.+ ..+..++++|.+ .|..|.++...+.+.. +.+.+ ..+.+++++.+|.++.+.+++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~---~g~~V~~~~r~~~~~~-~~~~~-----~~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLE---KGTHVISISRTENKEL-TKLAE-----QYNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHh---cCCEEEEEeCCchHHH-HHHHh-----ccCCceEEEEecCCCHHHHHHH
Confidence 478999975 578999999964 4667888775432221 11111 1134577899999999988765
No 311
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=39.13 E-value=2.8e+02 Score=30.61 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=28.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCC
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 632 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p 632 (858)
...+|+|+|-|..+.++++.|...+. ..++|++...
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGV--g~itI~D~d~ 53 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGV--KSVTLHDTKP 53 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCC--CeEEEEcCCc
Confidence 35899999999999999999975432 3588888643
No 312
>PRK08177 short chain dehydrogenase; Provisional
Probab=39.01 E-value=82 Score=32.50 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=37.8
Q ss_pred CeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
.+++|.|. +..|..++++|.+.+. .|+++ +++++..+.+.+ . .++.+..+|.++++.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~-~------~~~~~~~~D~~d~~~~ 60 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-------------QVTAT-VRGPQQDTALQA-L------PGVHIEKLDMNDPASL 60 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-------------EEEEE-eCCCcchHHHHh-c------cccceEEcCCCCHHHH
Confidence 46888886 4589999999987544 56655 554443443322 1 1233446788887766
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 61 ~~~ 63 (225)
T PRK08177 61 DQL 63 (225)
T ss_pred HHH
Confidence 554
No 313
>PRK07024 short chain dehydrogenase; Provisional
Probab=38.96 E-value=80 Score=33.35 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=43.1
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
++++|.|.+. .+..++++|.+ .|..|.++...+ ++.+.+.+. .+... +++++.+|.++.+.++++
T Consensus 3 ~~vlItGas~gIG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~~--~~~~~-~~~~~~~Dl~~~~~i~~~ 68 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYAR---QGATLGLVARRT--DALQAFAAR--LPKAA-RVSVYAADVRDADALAAA 68 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHh--cccCC-eeEEEEcCCCCHHHHHHH
Confidence 5789999664 78899999964 477788887532 222222110 01112 678899999999988775
No 314
>PRK07023 short chain dehydrogenase; Provisional
Probab=38.79 E-value=89 Score=32.57 Aligned_cols=60 Identities=17% Similarity=0.058 Sum_probs=39.3
Q ss_pred eEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
+++|.|.+ ..|..++++|.+.+. .++++ .++.+. .+... .+.++.++.+|.++.+.++
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~-------------~v~~~-~r~~~~--~~~~~-----~~~~~~~~~~D~~~~~~~~ 61 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGI-------------AVLGV-ARSRHP--SLAAA-----AGERLAEVELDLSDAAAAA 61 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCC-------------EEEEE-ecCcch--hhhhc-----cCCeEEEEEeccCCHHHHH
Confidence 68899884 589999999987554 45555 443221 11111 1345667789999998888
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 62 ~~ 63 (243)
T PRK07023 62 AW 63 (243)
T ss_pred HH
Confidence 74
No 315
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=38.76 E-value=55 Score=35.76 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=43.8
Q ss_pred ccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHH-HHHHHhhccccCCceEE-EecCCCCCHHHHHhcCc
Q 003003 301 GVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQM-DKLAENIAKDLNHIDIL-SKSCSLTLTKSYERAAA 378 (858)
Q Consensus 301 G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~m-e~l~~~~~~d~~~~~Vv-~~~Gd~~~~e~L~rA~i 378 (858)
|.|-.|..|+++|.+.++. ..|.++........ +.+ . ...+. +..||.++.+.|++| +
T Consensus 5 gsGflG~~iv~~Ll~~g~~-----------~~Vr~~d~~~~~~~~~~~-~-------~~~~~~~~~~Di~d~~~l~~a-~ 64 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYI-----------YEVRVLDRSPPPKFLKDL-Q-------KSGVKEYIQGDITDPESLEEA-L 64 (280)
T ss_pred CCcHHHHHHHHHHHHCCCc-----------eEEEEcccccccccchhh-h-------cccceeEEEeccccHHHHHHH-h
Confidence 5577999999999987631 14555522222111 111 1 12222 668999999999996 7
Q ss_pred cccCeEEEecC
Q 003003 379 NKARAIIILPT 389 (858)
Q Consensus 379 ~~A~aVIIl~~ 389 (858)
+.++.|+-++.
T Consensus 65 ~g~d~V~H~Aa 75 (280)
T PF01073_consen 65 EGVDVVFHTAA 75 (280)
T ss_pred cCCceEEEeCc
Confidence 78897776654
No 316
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=38.51 E-value=2e+02 Score=32.04 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=63.2
Q ss_pred CCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCC--CCcCCceEEEEECCCCCHHHHHhcccc
Q 003003 596 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGH--GKLKNVQVFHKIGNPLNFETLKDTIMN 672 (858)
Q Consensus 596 ~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~--~~l~~~~V~~i~GD~td~~~L~ea~i~ 672 (858)
.++|+|.|. |-.|..++++|.+ .|.+|+.++..+.. ....+..... ......+++++.||-+|.+.|.++- .
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~---~g~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~-~ 89 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLF---LNQTVIGLDNFSTG-YQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC-K 89 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHH---CCCEEEEEeCCCCc-chhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh-h
Confidence 478999998 6789999999974 46778888753211 1111111000 0011124788999999998887652 2
Q ss_pred ccccccCCCCCCcEEEEEeCCCc---cCCCCChhhHHHHHHHHHHHHHhhhhCCC
Q 003003 673 IQNSFKDGEELPLSIVVISDREW---LLGDPSRADKQSAYSLLLAENICNKLGVK 724 (858)
Q Consensus 673 i~~a~~~d~~~~~sivILtd~d~---~~~~~~~aDa~~l~~~L~~r~l~~~~g~~ 724 (858)
+.| .|+=++-... ...++......|+...+.+=+.+.+.+.+
T Consensus 90 -----~~d-----~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~ 134 (348)
T PRK15181 90 -----NVD-----YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS 134 (348)
T ss_pred -----CCC-----EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 123 4555553210 01233333445555555554556666654
No 317
>PRK06483 dihydromonapterin reductase; Provisional
Probab=38.35 E-value=1.2e+02 Score=31.43 Aligned_cols=61 Identities=8% Similarity=0.025 Sum_probs=37.5
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChH-HHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRK-QMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~-~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...++|.|.+. .|..++++|.+.+. .|+++ +++++ ..+.+.+ . + +.++.+|.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~-~-----~--~~~~~~D~~~~~ 59 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-------------PVIVS-YRTHYPAIDGLRQ-A-----G--AQCIQADFSTNA 59 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-------------eEEEE-eCCchhHHHHHHH-c-----C--CEEEEcCCCCHH
Confidence 34688998865 89999999987544 56655 54432 2222221 1 2 334567888777
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 60 ~~~~~ 64 (236)
T PRK06483 60 GIMAF 64 (236)
T ss_pred HHHHH
Confidence 76553
No 318
>PRK05693 short chain dehydrogenase; Provisional
Probab=37.97 E-value=99 Score=32.99 Aligned_cols=60 Identities=7% Similarity=0.056 Sum_probs=40.3
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSY 373 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L 373 (858)
..++|.|.+ ..|..++++|.+.+. .|+++ +++.+.++.+.+. + +.++.+|.++++.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-------------~V~~~-~r~~~~~~~~~~~------~--~~~~~~Dl~~~~~~ 59 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-------------EVWAT-ARKAEDVEALAAA------G--FTAVQLDVNDGAAL 59 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHC------C--CeEEEeeCCCHHHH
Confidence 368889875 589999999987544 45554 6666555554321 2 33457899998887
Q ss_pred Hhc
Q 003003 374 ERA 376 (858)
Q Consensus 374 ~rA 376 (858)
+++
T Consensus 60 ~~~ 62 (274)
T PRK05693 60 ARL 62 (274)
T ss_pred HHH
Confidence 664
No 319
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.96 E-value=1.3e+02 Score=31.53 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=19.8
Q ss_pred CeEEEEccC---chHHHHHHHHHhcCc
Q 003003 295 DHIIVCGVN---SHLSFILKQLNKYHE 318 (858)
Q Consensus 295 ~HIII~G~~---~~~~~li~eL~~~~~ 318 (858)
..++|.|.+ ..|..++++|.+.+.
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~ 32 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGI 32 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCC
Confidence 568999986 499999999987654
No 320
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=37.80 E-value=2.7e+02 Score=30.29 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=28.9
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~ 348 (858)
+|.|+|.|..|..+...|.+.++ +|+++ ++ ++.++.+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-------------~V~~~-~r-~~~~~~~~ 39 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-------------DVTFL-VR-PKRAKALR 39 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-------------ceEEE-ec-HHHHHHHH
Confidence 58999999999999999998654 56655 55 55555554
No 321
>PLN02427 UDP-apiose/xylose synthase
Probab=37.79 E-value=1.2e+02 Score=34.51 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=50.8
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcC-ccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYH-EFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~-~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
+..+|+|.|. |-.|..++++|.+.+ + .|+.+ ++..+..+.+....... ..-++-++.||..+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~-------------~V~~l-~r~~~~~~~l~~~~~~~-~~~~~~~~~~Dl~d~ 77 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH-------------KVLAL-DVYNDKIKHLLEPDTVP-WSGRIQFHRINIKHD 77 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC-------------EEEEE-ecCchhhhhhhcccccc-CCCCeEEEEcCCCCh
Confidence 4457999986 789999999999753 3 46655 44443333332110000 012455668999999
Q ss_pred HHHHhcCccccCeEEEecC
Q 003003 371 KSYERAAANKARAIIILPT 389 (858)
Q Consensus 371 e~L~rA~i~~A~aVIIl~~ 389 (858)
+.++++ ++.++.||=++.
T Consensus 78 ~~l~~~-~~~~d~ViHlAa 95 (386)
T PLN02427 78 SRLEGL-IKMADLTINLAA 95 (386)
T ss_pred HHHHHH-hhcCCEEEEccc
Confidence 998876 456787665554
No 322
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.78 E-value=2.2e+02 Score=30.75 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=71.6
Q ss_pred EEEEccCch-----HHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 297 IIVCGVNSH-----LSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 297 III~G~~~~-----~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
++..+|-+. ....++++.+++. +-+++.|.+.++.+++.+... ..|.+.+...-..+..+
T Consensus 90 lv~m~Y~Npi~~~G~e~f~~~~~~aGv-------------dgviipDlp~ee~~~~~~~~~--~~gl~~i~lv~P~T~~e 154 (256)
T TIGR00262 90 IGLLTYYNLIFRKGVEEFYAKCKEVGV-------------DGVLVADLPLEESGDLVEAAK--KHGVKPIFLVAPNADDE 154 (256)
T ss_pred EEEEEeccHHhhhhHHHHHHHHHHcCC-------------CEEEECCCChHHHHHHHHHHH--HCCCcEEEEECCCCCHH
Confidence 445666442 2567788877655 456666777777666554321 12666554444445556
Q ss_pred HHHhcCccccC-eEEEecCCC---CCccchHHHHHHHHhcCCCCCCCCCcEEE--EEcCcccHHHHHhcCCCeEEehHHH
Q 003003 372 SYERAAANKAR-AIIILPTKG---DRYEVDTDAFLSVLALQPIPKMNSVPTIV--EVSNPNTCELLKSLSGLKVEPVENV 445 (858)
Q Consensus 372 ~L~rA~i~~A~-aVIIl~~~~---D~~e~Da~~l~~vLalr~~~~~~~~~iIa--ev~d~~~~~~l~~ag~d~Vi~~~~i 445 (858)
.++...- .++ .|.+.+..+ ...+-+.+....+=.+|+. .+.|+++ -++++++...+..+|+|-|+.-..+
T Consensus 155 ri~~i~~-~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~---~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 155 RLKQIAE-KSQGFVYLVSRAGVTGARNRAASALNELVKRLKAY---SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred HHHHHHH-hCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 6655543 344 555544322 1101111222222223333 3458877 5678899998999999877765544
Q ss_pred H
Q 003003 446 A 446 (858)
Q Consensus 446 ~ 446 (858)
.
T Consensus 231 v 231 (256)
T TIGR00262 231 V 231 (256)
T ss_pred H
Confidence 3
No 323
>PRK07326 short chain dehydrogenase; Provisional
Probab=37.72 E-value=68 Score=33.15 Aligned_cols=65 Identities=9% Similarity=0.049 Sum_probs=43.3
Q ss_pred CCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|. |..+..+++.|.+ .|..|.++...+ ++...+ .++. . ..+++++.+|.++.+.++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~---~g~~V~~~~r~~--~~~~~~~~~l~--~--~~~~~~~~~D~~~~~~~~~~ 72 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLA---EGYKVAITARDQ--KELEEAAAELN--N--KGNVLGLAADVRDEADVQRA 72 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---CCCEEEEeeCCH--HHHHHHHHHHh--c--cCcEEEEEccCCCHHHHHHH
Confidence 478999987 5678999999964 477788877532 222222 1110 0 13577899999999988765
No 324
>PRK06484 short chain dehydrogenase; Validated
Probab=37.50 E-value=1.1e+02 Score=36.22 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=43.6
Q ss_pred CCCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 595 PKERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 595 ~~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
..+.+||.|.++ .+..+++.|.+ .|..|.+++.. +++.+.+.+ .+ +.++..+.+|.+|.+.++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~---~G~~V~~~~r~--~~~~~~~~~----~~-~~~~~~~~~D~~~~~~~~~~ 333 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAA---AGDRLLIIDRD--AEGAKKLAE----AL-GDEHLSVQADITDEAAVESA 333 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH----Hh-CCceeEEEccCCCHHHHHHH
Confidence 457889999876 58889999964 57778887752 223222221 11 23456789999999988765
No 325
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.50 E-value=5.7e+02 Score=27.80 Aligned_cols=130 Identities=17% Similarity=0.275 Sum_probs=75.6
Q ss_pred eEEEEccCch-----HHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 296 HIIVCGVNSH-----LSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 296 HIII~G~~~~-----~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
.+|+.+|-+. ...+++++.+++. +-|++.|.+.++.+++.+.. ..+|.+.++..--.+..
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aGv-------------dgviipDLP~ee~~~~~~~~--~~~gi~~I~lv~PtT~~ 157 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAGV-------------KGLIIPDLPYEESDYLISVC--NLYNIELILLIAPTSSK 157 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcCC-------------eEEEecCCCHHHHHHHHHHH--HHcCCCEEEEECCCCCH
Confidence 4678888653 2447777777655 45667788887777665433 12267776655434445
Q ss_pred HHHHhcCccccC-eEEEecCCC---CCccchHHHHHHHH-hcCCCCCCCCCcEEE--EEcCcccHHHHHhcCCCeEEehH
Q 003003 371 KSYERAAANKAR-AIIILPTKG---DRYEVDTDAFLSVL-ALQPIPKMNSVPTIV--EVSNPNTCELLKSLSGLKVEPVE 443 (858)
Q Consensus 371 e~L~rA~i~~A~-aVIIl~~~~---D~~e~Da~~l~~vL-alr~~~~~~~~~iIa--ev~d~~~~~~l~~ag~d~Vi~~~ 443 (858)
+.+++. ++.|+ -|.+++..+ ...+.+ +.+...+ .+|+ ..+.|+++ -++++++.+.+..+|+|-||.=.
T Consensus 158 eri~~i-~~~a~gFIY~vS~~GvTG~~~~~~-~~~~~~i~~ir~---~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 158 SRIQKI-ARAAPGCIYLVSTTGVTGLKTELD-KKLKKLIETIKK---MTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHH-HHhCCCcEEEEcCCCCCCCCcccc-HHHHHHHHHHHH---hcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 666665 45555 444434322 111111 2222222 2233 24678887 77889999989999998777544
Q ss_pred HH
Q 003003 444 NV 445 (858)
Q Consensus 444 ~i 445 (858)
.+
T Consensus 233 al 234 (263)
T CHL00200 233 AC 234 (263)
T ss_pred HH
Confidence 33
No 326
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=37.39 E-value=66 Score=34.60 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=44.0
Q ss_pred EEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 297 IIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 297 III~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
|+|.|. |..|..++++|.+.++ .|.+++ ++++..+. .+..+ +.||..|+++|++
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~-------------~V~~~~-R~~~~~~~---------~~~~~--~~~d~~d~~~l~~ 56 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASV-------------PFLVAS-RSSSSSAG---------PNEKH--VKFDWLDEDTWDN 56 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCC-------------cEEEEe-CCCccccC---------CCCcc--ccccCCCHHHHHH
Confidence 567776 8899999999988654 455553 33321110 13333 4799999999988
Q ss_pred cC-----ccc-cCeEEEecC
Q 003003 376 AA-----ANK-ARAIIILPT 389 (858)
Q Consensus 376 A~-----i~~-A~aVIIl~~ 389 (858)
+= +.. ++.++.+++
T Consensus 57 a~~~~~~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 57 PFSSDDGMEPEISAVYLVAP 76 (285)
T ss_pred HHhcccCcCCceeEEEEeCC
Confidence 63 244 787776554
No 327
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.26 E-value=92 Score=34.28 Aligned_cols=72 Identities=11% Similarity=0.142 Sum_probs=46.0
Q ss_pred CCeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeC--CChHHH-HHHHHhhccccCCceEEEecCCCCC
Q 003003 294 SDHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSD--LPRKQM-DKLAENIAKDLNHIDILSKSCSLTL 369 (858)
Q Consensus 294 ~~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d--~~~~~m-e~l~~~~~~d~~~~~Vv~~~Gd~~~ 369 (858)
..-++|.|... .|..++.+|.+.+. .+|+++- +..+.+ +++.+.... .++.++++|-++
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~-------------~l~lvar~~rrl~~v~~~l~~~~~~----~~v~~~~~Dvs~ 74 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA-------------KLVLVARRARRLERVAEELRKLGSL----EKVLVLQLDVSD 74 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-------------ceEEeehhhhhHHHHHHHHHHhCCc----CccEEEeCccCC
Confidence 34467789976 89999999998655 3333322 223333 344333211 168888999999
Q ss_pred HHHHHhc------CccccC
Q 003003 370 TKSYERA------AANKAR 382 (858)
Q Consensus 370 ~e~L~rA------~i~~A~ 382 (858)
.++-+++ ...+.|
T Consensus 75 ~~~~~~~~~~~~~~fg~vD 93 (282)
T KOG1205|consen 75 EESVKKFVEWAIRHFGRVD 93 (282)
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 9998866 455566
No 328
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=37.21 E-value=3.2e+02 Score=30.80 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=27.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCc-eEEEEcC
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGS-VLEILSD 630 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs-~I~Ii~~ 630 (858)
...+|+|+|-|..+..+++.|... |. .++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a---Gvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA---GIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcC
Confidence 357899999999999999999754 43 7888876
No 329
>PRK07074 short chain dehydrogenase; Provisional
Probab=37.17 E-value=73 Score=33.49 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=43.5
Q ss_pred CcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.++|.|.+ ..+..+++.|.+ .|..|.++...+ ++.+.+.+ .+.+..+.++.+|.+|.+.++++
T Consensus 3 k~ilItGat~~iG~~la~~L~~---~g~~v~~~~r~~--~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~ 67 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLA---AGDRVLALDIDA--AALAAFAD----ALGDARFVPVACDLTDAASLAAA 67 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH----HhcCCceEEEEecCCCHHHHHHH
Confidence 468888874 678899999964 577788877532 22222221 12344577899999999998765
No 330
>PRK12747 short chain dehydrogenase; Provisional
Probab=37.12 E-value=1.5e+02 Score=30.92 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=37.4
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ -.|..++++|.+.+. .|++...++++..++...+... .+.++.+...|.++.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~ 68 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA-------------LVAIHYGNRKEEAEETVYEIQS--NGGSAFSIGANLESLHG 68 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------------eEEEEcCCCHHHHHHHHHHHHh--cCCceEEEecccCCHHH
Confidence 3578888876 489999999987654 4555433444444443332211 12334445566666544
Q ss_pred H
Q 003003 373 Y 373 (858)
Q Consensus 373 L 373 (858)
.
T Consensus 69 ~ 69 (252)
T PRK12747 69 V 69 (252)
T ss_pred H
Confidence 3
No 331
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=36.84 E-value=1.1e+02 Score=34.06 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=48.8
Q ss_pred cCCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 292 LESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 292 ~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...++|+|+|.|-.+.+-.+-...- | .+|.++ |.+.+.+..+.+.+ +.++.++.- ++.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~gl-------g------A~Vtil-d~n~~rl~~ldd~f-----~~rv~~~~s---t~~ 223 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGL-------G------ADVTIL-DLNIDRLRQLDDLF-----GGRVHTLYS---TPS 223 (371)
T ss_pred CCCccEEEECCccccchHHHHHhcc-------C------CeeEEE-ecCHHHHhhhhHhh-----CceeEEEEc---CHH
Confidence 3689999999999998877765442 2 268877 88887777766544 677776653 455
Q ss_pred HHHhcCccccCeE
Q 003003 372 SYERAAANKARAI 384 (858)
Q Consensus 372 ~L~rA~i~~A~aV 384 (858)
.++.+ +.+||.+
T Consensus 224 ~iee~-v~~aDlv 235 (371)
T COG0686 224 NIEEA-VKKADLV 235 (371)
T ss_pred HHHHH-hhhccEE
Confidence 55444 7788843
No 332
>PLN03223 Polycystin cation channel protein; Provisional
Probab=36.80 E-value=96 Score=40.77 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=34.4
Q ss_pred CCCChhHHHHHhheeeeeccccc--cc-------CCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 003003 221 ETQSLEDCLWEAWACLISSSTHL--KQ-------RTRVERVIGFI-LAIWGILFYSRLLSTMTEQFRNN 279 (858)
Q Consensus 221 ~~~s~~da~w~a~~~vt~sg~g~--gd-------~T~~gRl~svv-l~l~Gi~~fa~li~~it~~l~~~ 279 (858)
...|+..+++..|.+++ ....| .+ ...+|.++-+. ++++.++++-+++++|.+.+.+.
T Consensus 1358 ~FSTf~sSL~TLFqMLL-GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1358 HFSDMTDSINSLFENLL-GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred hhcCHHHHHHHHHHHHH-cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777776655443 11221 11 12456665444 45566677789999999888764
No 333
>PRK07454 short chain dehydrogenase; Provisional
Probab=36.73 E-value=67 Score=33.39 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=43.3
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.+ ..+..++++|.+ .|..|.+++..+ ++..+..... +-.+.++.++.+|.++.+.+.++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~---~G~~V~~~~r~~-~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 73 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAK---AGWDLALVARSQ-DALEALAAEL---RSTGVKAAAYSIDLSNPEAIAPG 73 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHHHH---HhCCCcEEEEEccCCCHHHHHHH
Confidence 3678999984 578899999964 567788877532 2211111111 01123577899999999988765
No 334
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.68 E-value=5.7e+02 Score=29.25 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=27.2
Q ss_pred HhcCCCCCCCCCcEEEEEcCcccHHH-HHhcCCCeEEehH--HHHHHHHHHH
Q 003003 405 LALQPIPKMNSVPTIVEVSNPNTCEL-LKSLSGLKVEPVE--NVASKLFVQC 453 (858)
Q Consensus 405 Lalr~~~~~~~~~iIaev~d~~~~~~-l~~ag~d~Vi~~~--~i~~~llaq~ 453 (858)
|.+|++.+.-++|++ .|+.-+.. ++....++.||.+ +..++.++.-
T Consensus 299 lkIreiA~e~~Ipi~---enppLARaLY~~~~v~~~IP~e~y~aVaevL~~V 347 (363)
T COG1377 299 LKIREIAKEHGIPII---ENPPLARALYRQVEVGQQIPEELYKAVAEVLAYV 347 (363)
T ss_pred HHHHHHHHHcCCcee---cChHHHHHHHHhcCccccCCHHHHHHHHHHHHHH
Confidence 555665443456665 56665544 4455557888875 5566666553
No 335
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=36.50 E-value=1.9e+02 Score=32.97 Aligned_cols=113 Identities=14% Similarity=0.156 Sum_probs=71.3
Q ss_pred CCCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhccccc
Q 003003 595 PKERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNI 673 (858)
Q Consensus 595 ~~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i 673 (858)
...+++|.|++ --+..++++|.+.. +..+|.+++..|.... ...+ ........+.++.||-.+...+..+--.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~-~~~~irv~D~~~~~~~--~~~e--~~~~~~~~v~~~~~D~~~~~~i~~a~~~- 76 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENE-LKLEIRVVDKTPTQSN--LPAE--LTGFRSGRVTVILGDLLDANSISNAFQG- 76 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcc-cccEEEEeccCccccc--cchh--hhcccCCceeEEecchhhhhhhhhhccC-
Confidence 35889999965 57999999998764 3678888887653110 0000 0012356678899999999988887222
Q ss_pred cccccCCCCCCcEEEEEe-CCCc--cCCCCChhhHHHHHHHHHHHHHhhhhCCC
Q 003003 674 QNSFKDGEELPLSIVVIS-DREW--LLGDPSRADKQSAYSLLLAENICNKLGVK 724 (858)
Q Consensus 674 ~~a~~~d~~~~~sivILt-d~d~--~~~~~~~aDa~~l~~~L~~r~l~~~~g~~ 724 (858)
+ .++.++ -..| ...+.+..+.-|+-....+-.-|.+.|++
T Consensus 77 --~---------~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~ 119 (361)
T KOG1430|consen 77 --A---------VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK 119 (361)
T ss_pred --c---------eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence 1 344443 1111 12245666677777777777778888765
No 336
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=36.42 E-value=1e+02 Score=33.86 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=37.2
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhh
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 351 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~ 351 (858)
...+++|+|.|-.+..++-.|.+.+. .+|+|. ++..+..+++.+.+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~------------~~i~V~-NRt~~ra~~La~~~ 170 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA------------KRITVV-NRTRERAEELADLF 170 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC------------CEEEEE-eCCHHHHHHHHHHh
Confidence 46789999999999999999998765 368876 78777777776655
No 337
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=36.10 E-value=64 Score=26.93 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=31.2
Q ss_pred CCCHHHHHccCC-ceEEEEEEECCEEEECCCC---CceecCCCEEEEEee
Q 003003 484 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPND---DETLQPTDKILFIAP 529 (858)
Q Consensus 484 G~tf~el~~~~~-~aivIGI~r~G~~~lnP~~---d~~L~~GD~LivIa~ 529 (858)
+.|+.|+...+. ..--+++..||++ .|.. ++.|.+||++-++..
T Consensus 14 ~~tv~~ll~~l~~~~~~i~V~vNg~~--v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 14 GATLAELLEELGLDPRGVAVALNGEI--VPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCCHHHHHHHcCCCCCcEEEEECCEE--cCHHHcCceecCCCCEEEEEEe
Confidence 678999876553 3334466679985 3554 389999999988765
No 338
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=35.97 E-value=1.6e+02 Score=32.13 Aligned_cols=59 Identities=14% Similarity=-0.004 Sum_probs=38.1
Q ss_pred EeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEE-EEECCCCCHHHHHhc
Q 003003 602 LGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVF-HKIGNPLNFETLKDT 669 (858)
Q Consensus 602 ~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~-~i~GD~td~~~L~ea 669 (858)
=|.|-.+..++++|.+... -..|.+++..+...... .+....+. ++.||-+|++.|.++
T Consensus 4 GgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~--------~~~~~~~~~~~~~Di~d~~~l~~a 63 (280)
T PF01073_consen 4 GGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLK--------DLQKSGVKEYIQGDITDPESLEEA 63 (280)
T ss_pred cCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccch--------hhhcccceeEEEeccccHHHHHHH
Confidence 3566789999999975421 26777777543322211 12222223 799999999999998
No 339
>PRK07041 short chain dehydrogenase; Provisional
Probab=35.97 E-value=1.2e+02 Score=31.24 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=40.8
Q ss_pred EEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHhc
Q 003003 298 IVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERA 376 (858)
Q Consensus 298 II~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~rA 376 (858)
+|.|.+ ..|..++++|.+.+. .|+++ .++++.++.+.+... . +.++.++.+|.++++.++++
T Consensus 1 lItGas~~iG~~~a~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~-~--~~~~~~~~~Dl~~~~~~~~~ 63 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA-------------RVTIA-SRSRDRLAAAARALG-G--GAPVRTAALDITDEAAVDAF 63 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHHHHHHHh-c--CCceEEEEccCCCHHHHHHH
Confidence 355654 589999999987654 55554 676666665443321 1 33455668999999988775
No 340
>COG4292 Predicted membrane protein [Function unknown]
Probab=35.84 E-value=31 Score=38.78 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=35.9
Q ss_pred hhHHHHHhheeeeecccccccCCchhHHHHHHHHHHHHHHH
Q 003003 225 LEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFY 265 (858)
Q Consensus 225 ~~da~w~a~~~vt~sg~g~gd~T~~gRl~svvl~l~Gi~~f 265 (858)
+..++||+|...|.-+.-+|.....-|++.++.+++|+++-
T Consensus 57 l~lalWW~Wi~tT~ftnr~g~e~~~~rl~l~~~Mf~~vlLa 97 (387)
T COG4292 57 LILALWWAWIHTTWFTNRLGTEIEPVRLLLLVLMFFGVLLA 97 (387)
T ss_pred HHHHHHHHHHhhHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 56789999998887788899999999999999999998764
No 341
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.81 E-value=1.2e+02 Score=32.26 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.1
Q ss_pred CCeEEEEcc---CchHHHHHHHHHhcCc
Q 003003 294 SDHIIVCGV---NSHLSFILKQLNKYHE 318 (858)
Q Consensus 294 ~~HIII~G~---~~~~~~li~eL~~~~~ 318 (858)
..+++|.|. +..|..++++|.+.+.
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~ 33 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGA 33 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCC
Confidence 458999995 3689999999988654
No 342
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=35.76 E-value=83 Score=34.23 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=30.6
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
+|.|+|.|..|..++..|.+.+. .|.+ .+.+++.++.+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-------------~V~~-~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-------------TVYG-VSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHH
Confidence 58899999999999999987654 4554 4777777776543
No 343
>PRK06194 hypothetical protein; Provisional
Probab=35.60 E-value=85 Score=33.66 Aligned_cols=67 Identities=10% Similarity=0.027 Sum_probs=44.6
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+++||.|.+ ..+..++++|.+ .|..|++++..+ +...+...++ .-.+.+++++.+|.+|.+.++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~---~G~~V~~~~r~~-~~~~~~~~~~---~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAA---LGMKLVLADVQQ-DALDRAVAEL---RAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHH---CCCEEEEEeCCh-HHHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 3679999986 478899999964 577888877532 1112221211 11145678899999999998875
No 344
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=34.91 E-value=81 Score=27.06 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=33.2
Q ss_pred CCCHHHHHccCC-ceEEEEEEECCEEEECCC---CCceecCCCEEEEEe
Q 003003 484 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPN---DDETLQPTDKILFIA 528 (858)
Q Consensus 484 G~tf~el~~~~~-~aivIGI~r~G~~~lnP~---~d~~L~~GD~LivIa 528 (858)
+.|+.|+..... +.-.+++..||++ .|. .++.++.||++-++.
T Consensus 17 ~~tv~dLL~~l~~~~~~vav~vNg~i--Vpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 17 GTTVADLLAQLGLNPEGVAVAVNGEI--VPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred CCcHHHHHHHhCCCCceEEEEECCEE--ccchhhhhccccCCCEEEEEE
Confidence 379999876654 4566777779995 576 788999999998764
No 345
>PRK06841 short chain dehydrogenase; Provisional
Probab=34.84 E-value=1.6e+02 Score=30.71 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=41.0
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..+++|.|. +..|..++++|.+.+. .|+++ .++++. ....+.. .+.++.++.+|.++++.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~-------------~Vi~~-~r~~~~-~~~~~~~----~~~~~~~~~~Dl~~~~~ 75 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA-------------RVALL-DRSEDV-AEVAAQL----LGGNAKGLVCDVSDSQS 75 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEE-eCCHHH-HHHHHHh----hCCceEEEEecCCCHHH
Confidence 457888887 5699999999987544 45544 665432 2222211 12344466889998888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 76 ~~~~ 79 (255)
T PRK06841 76 VEAA 79 (255)
T ss_pred HHHH
Confidence 7765
No 346
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=34.74 E-value=1.5e+02 Score=30.84 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=29.2
Q ss_pred CCCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 293 ESDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 293 ~~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
+...++|.|.+ ..|..++++|.+.+. .|+++ +++.+..+.+.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-------------~Vi~~-~r~~~~~~~~~~ 54 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-------------TVILL-GRTEEKLEAVYD 54 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------------cEEEE-eCCHHHHHHHHH
Confidence 45577888775 489999999987543 46555 666655555443
No 347
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=34.67 E-value=73 Score=34.69 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=45.8
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
.++|.|. |-.|..++++|.+.+. .|+++ +++++..+.+. ...+..+.||..+.+.+.
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-------------~V~~~-~r~~~~~~~~~--------~~~~~~~~~D~~~~~~l~ 59 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-------------EVRVL-VRPTSDRRNLE--------GLDVEIVEGDLRDPASLR 59 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-------------EEEEE-EecCccccccc--------cCCceEEEeeCCCHHHHH
Confidence 4788876 7899999999987654 45555 44332222111 123445689999999887
Q ss_pred hcCccccCeEEEecC
Q 003003 375 RAAANKARAIIILPT 389 (858)
Q Consensus 375 rA~i~~A~aVIIl~~ 389 (858)
++ ++.++.||-++.
T Consensus 60 ~~-~~~~d~vi~~a~ 73 (328)
T TIGR03466 60 KA-VAGCRALFHVAA 73 (328)
T ss_pred HH-HhCCCEEEEece
Confidence 75 456776665553
No 348
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=34.46 E-value=4.4e+02 Score=29.78 Aligned_cols=62 Identities=10% Similarity=-0.083 Sum_probs=43.0
Q ss_pred CCCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 595 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 595 ~~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.+|+|.|. |-.+..+++.|.+ .|.+|+.++..+.. .+. -....+.++.||.++.+.+.++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~---~G~~V~~v~r~~~~----~~~------~~~~~~~~~~~Dl~d~~~~~~~ 82 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA---EGHYIIASDWKKNE----HMS------EDMFCHEFHLVDLRVMENCLKV 82 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh---CCCEEEEEEecccc----ccc------cccccceEEECCCCCHHHHHHH
Confidence 4678999999 7899999999964 47788888742210 011 0011245688999999888775
No 349
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=34.19 E-value=94 Score=33.51 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=41.0
Q ss_pred cEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 598 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 598 ~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+|+|.|. |-.+..++++|.+.. +...|+.++..+...+.+.+... ..+..+.++.||.+|.+.+.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLDKLTYAGNLENLADL----EDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEecCCCcchhhhhhhhh----ccCCCcEEEEcCCcCHHHHHHH
Confidence 5889998 578999999996531 23567776532111111111111 1122466789999999999876
No 350
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=34.16 E-value=1.5e+02 Score=32.49 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=46.2
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCC--ChHH-HHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL--PRKQ-MDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~--~~~~-me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
.++|.|. |-.|..++++|.+.+. .|+++... .+.. .+.+.+ . .+.++.++.||.++.+
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~-------------~V~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~Dl~d~~ 63 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGH-------------DVVILDNLCNSKRSVLPVIER-L----GGKHPTFVEGDIRNEA 63 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCC-------------eEEEEecCCCchHhHHHHHHH-h----cCCCceEEEccCCCHH
Confidence 3788885 7899999999988654 46655322 1111 111111 1 1233455689999999
Q ss_pred HHHhcCc-cccCeEEEecC
Q 003003 372 SYERAAA-NKARAIIILPT 389 (858)
Q Consensus 372 ~L~rA~i-~~A~aVIIl~~ 389 (858)
.+.++-. ...+.||-++.
T Consensus 64 ~~~~~~~~~~~d~vvh~a~ 82 (338)
T PRK10675 64 LLTEILHDHAIDTVIHFAG 82 (338)
T ss_pred HHHHHHhcCCCCEEEECCc
Confidence 8877532 25787766554
No 351
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=34.00 E-value=4.7e+02 Score=25.80 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcccccccCCCeEEEEccCch--HHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHH
Q 003003 275 QFRNNMQKLREGAQMQVLESDHIIVCGVNSH--LSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (858)
Q Consensus 275 ~l~~~~~~lr~G~~~~v~~~~HIII~G~~~~--~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~ 348 (858)
.+++..+++++|+ .-+||+++|-|-. +..++.++..... |. ...+-++...|++.+..+.
T Consensus 6 ~i~~~~~~i~~~~-----~~~~iv~~GiGGS~lg~~~~~~~~~~~~---~~------~~~i~~~~~~D~~~~~~~~ 67 (158)
T cd05015 6 RIKEFAEKVRSGK-----KITDVVVIGIGGSDLGPRAVYEALKPYF---KG------GLRLHFVSNVDPDDLAELL 67 (158)
T ss_pred HHHHHHHHHhcCC-----CCCEEEEEecCccHHHHHHHHHHHHhhc---cC------CceEEEEeCCCHHHHHHHH
Confidence 3444445555541 2589999999874 3445555543211 01 1244445556665555544
No 352
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=33.91 E-value=1e+02 Score=31.55 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=29.0
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
.|-|+|-|..|..++-.|...++ .|+- .|.+++.++.+.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-------------~V~g-~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-------------QVIG-VDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-------------EEEE-E-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHhCCC-------------EEEE-EeCChHHHHHHhh
Confidence 57889999999999999998765 4554 4999988888765
No 353
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=33.63 E-value=3.6e+02 Score=29.81 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=42.7
Q ss_pred CcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+++||.|. |-.+..+++.|.+.. .+..|.++...+. ....+.. .+....+.++.||.+|.+.|.++
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~r~~~--~~~~~~~----~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY-NPKKIIIYSRDEL--KQWEMQQ----KFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEcCChh--HHHHHHH----HhCCCcEEEEEccCCCHHHHHHH
Confidence 57899998 568999999997542 2356777764221 1111111 12223577899999999999876
No 354
>PRK12828 short chain dehydrogenase; Provisional
Probab=33.49 E-value=1.3e+02 Score=30.83 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=39.5
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
..-++|.|. |..|..++++|.+.+. .|+++ +++++..++..+... ...+....+|..+.+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~-------------~v~~~-~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~ 68 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA-------------RVALI-GRGAAPLSQTLPGVP----ADALRIGGIDLVDPQA 68 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC-------------eEEEE-eCChHhHHHHHHHHh----hcCceEEEeecCCHHH
Confidence 345777776 6799999999987654 45544 665544443332221 1122334688888888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 69 ~~~~ 72 (239)
T PRK12828 69 ARRA 72 (239)
T ss_pred HHHH
Confidence 7664
No 355
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=33.47 E-value=2.7e+02 Score=28.73 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=26.8
Q ss_pred CCcEEEEeccccHHHHHHHHhcccCCCceEEEEcC
Q 003003 596 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSD 630 (858)
Q Consensus 596 ~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~ 630 (858)
..||+|+|-|..+.++++.|...+. ..+++++.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV--g~i~lvD~ 51 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI--DSITIVDH 51 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC--CEEEEEEC
Confidence 5899999999999999999975532 25888875
No 356
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=33.35 E-value=1.1e+02 Score=25.52 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=31.2
Q ss_pred CCCHHHHHccCC-ceEEEEEEECCEEEECC---CCCceecCCCEEEEEee
Q 003003 484 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHP---NDDETLQPTDKILFIAP 529 (858)
Q Consensus 484 G~tf~el~~~~~-~aivIGI~r~G~~~lnP---~~d~~L~~GD~LivIa~ 529 (858)
|.|+.|+...+. ..-.+++..||++ .| ..++.|++||++-++-.
T Consensus 13 ~~tv~~ll~~l~~~~~~v~v~vN~~i--v~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 13 GLTLAALLESLGLDPRRVAVAVNGEI--VPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCcHHHHHHHcCCCCCeEEEEECCEE--cCHHHcCceecCCCCEEEEEEe
Confidence 678998876554 3345667779985 35 34579999999987754
No 357
>PRK07904 short chain dehydrogenase; Provisional
Probab=32.99 E-value=1e+02 Score=32.68 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=44.1
Q ss_pred CCCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 595 PKERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 595 ~~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
..++++|.|.+. .+..++++|.+. .|..|.++...+.....+...++. ...+..++++.+|.+|.+..++.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~r~~~~~~~~~~~~l~--~~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKN--APARVVLAALPDDPRRDAAVAQMK--AAGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEeCCcchhHHHHHHHHH--hcCCCceEEEEecCCChHHHHHH
Confidence 457899999886 688999998643 246777776532211221212110 12233578899999998876654
No 358
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=32.73 E-value=2.1e+02 Score=30.06 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=23.3
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
.+-||+|+|.|..|..+++.|...+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv 45 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV 45 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 46799999999999999999998765
No 359
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=32.71 E-value=3.5e+02 Score=29.78 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=59.3
Q ss_pred EccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHhcCcc
Q 003003 300 CGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAAN 379 (858)
Q Consensus 300 ~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~rA~i~ 379 (858)
||.|..+..+++.+.. .. .++-+ |.+++.++...+++....++.+|..+.||..+...+..-..
T Consensus 72 cGtG~~t~~Ll~~l~~-~~-------------~~~~i-DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~- 135 (301)
T TIGR03438 72 SGSSRKTRLLLDALRQ-PA-------------RYVPI-DISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPA- 135 (301)
T ss_pred CCcchhHHHHHHhhcc-CC-------------eEEEE-ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccc-
Confidence 6677788888888753 11 34444 88888777766554333346778778899887543332211
Q ss_pred ccCeEEEecCCC--CCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHH
Q 003003 380 KARAIIILPTKG--DRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELL 431 (858)
Q Consensus 380 ~A~aVIIl~~~~--D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l 431 (858)
..+.+++..+.. .-...|...+..-+. +.++ ++...+.-+.-....+.+
T Consensus 136 ~~~~~~~~~gs~~~~~~~~e~~~~L~~i~-~~L~--pgG~~lig~d~~~~~~~~ 186 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFTPEEAVAFLRRIR-QLLG--PGGGLLIGVDLVKDPAVL 186 (301)
T ss_pred cCCeEEEEecccccCCCHHHHHHHHHHHH-HhcC--CCCEEEEeccCCCCHHHH
Confidence 234444443321 111224433333222 2344 344555555555555443
No 360
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.45 E-value=1.5e+02 Score=31.66 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCeEEEEcc---CchHHHHHHHHHhcCccccccccccCCCceEEEEe--CCChHHHHHHHHhhccccCCceEEEecCCCC
Q 003003 294 SDHIIVCGV---NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLS--DLPRKQMDKLAENIAKDLNHIDILSKSCSLT 368 (858)
Q Consensus 294 ~~HIII~G~---~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~--d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~ 368 (858)
..+++|.|. +..|..++++|.+.+. .|++.. +++++.++++.+++ +.. .+...|.+
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~-------------~v~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~Dv~ 66 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGA-------------ELAFTYVGDRFKDRITEFAAEF-----GSD-LVFPCDVA 66 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCC-------------eEEEEccchHHHHHHHHHHHhc-----CCc-ceeeccCC
Confidence 457889994 4689999999988654 455442 22344444443322 111 23456777
Q ss_pred CHHHHHhc
Q 003003 369 LTKSYERA 376 (858)
Q Consensus 369 ~~e~L~rA 376 (858)
+++.++++
T Consensus 67 d~~~v~~~ 74 (260)
T PRK06997 67 SDEQIDAL 74 (260)
T ss_pred CHHHHHHH
Confidence 77766654
No 361
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=32.40 E-value=3e+02 Score=27.20 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=31.1
Q ss_pred CeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 295 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 295 ~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
.+|=++|.|..|..+++.|.+.++ .|.+ -|++++..+.+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-------------~v~~-~d~~~~~~~~~~~ 42 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-------------EVTV-YDRSPEKAEALAE 42 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-------------EEEE-EESSHHHHHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-------------eEEe-eccchhhhhhhHH
Confidence 367899999999999999988765 4554 4888888888765
No 362
>PRK13243 glyoxylate reductase; Reviewed
Probab=32.31 E-value=6.9e+02 Score=28.04 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=22.3
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
...++.|+|+|..|..+++.|...+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~ 174 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM 174 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC
Confidence 46689999999999999999987654
No 363
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.21 E-value=1e+02 Score=32.30 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=42.7
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.++|.|.+. .+..+++.|.+ .|..+.++...+.+...+....+ +-.+.++.++.+|.++++.+.++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~---~g~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 70 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAA---AGFDLAINDRPDDEELAATQQEL---RALGVEVIFFPADVADLSAHEAM 70 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHH---CCCEEEEEecCchhHHHHHHHHH---HhcCCceEEEEecCCCHHHHHHH
Confidence 5688888764 68899999974 47778887653322211111111 01134577899999999988765
No 364
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.19 E-value=1.8e+02 Score=30.90 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=37.6
Q ss_pred CCeEEEEccC---chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChH---HHHHHHHhhccccCCceEEEecCCC
Q 003003 294 SDHIIVCGVN---SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRK---QMDKLAENIAKDLNHIDILSKSCSL 367 (858)
Q Consensus 294 ~~HIII~G~~---~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~---~me~l~~~~~~d~~~~~Vv~~~Gd~ 367 (858)
...++|.|.+ -.|..++++|.+.+. .|++. +++.+ .++++.++. + .+.+..+|.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~-------------~v~l~-~r~~~~~~~~~~~~~~~-----~-~~~~~~~D~ 69 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGA-------------ELAVT-YLNDKARPYVEPLAEEL-----D-APIFLPLDV 69 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-------------EEEEE-eCChhhHHHHHHHHHhh-----c-cceEEecCc
Confidence 4578888986 599999999988654 45554 55432 233333221 1 123345677
Q ss_pred CCHHHHHhc
Q 003003 368 TLTKSYERA 376 (858)
Q Consensus 368 ~~~e~L~rA 376 (858)
+++++.+++
T Consensus 70 ~~~~~v~~~ 78 (258)
T PRK07533 70 REPGQLEAV 78 (258)
T ss_pred CCHHHHHHH
Confidence 776666544
No 365
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=32.17 E-value=1.5e+02 Score=29.88 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=21.0
Q ss_pred cCCCeEEEEccCch-HHHHHHHHHhcC
Q 003003 292 LESDHIIVCGVNSH-LSFILKQLNKYH 317 (858)
Q Consensus 292 ~~~~HIII~G~~~~-~~~li~eL~~~~ 317 (858)
....+++|+|.|+. +..+++.|...+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g 68 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRN 68 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC
Confidence 45789999999995 777888888743
No 366
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=31.95 E-value=3.6e+02 Score=32.78 Aligned_cols=70 Identities=9% Similarity=-0.047 Sum_probs=44.3
Q ss_pred CCCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCc------CCceEEEEECCCCCHHHH
Q 003003 595 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKL------KNVQVFHKIGNPLNFETL 666 (858)
Q Consensus 595 ~~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~-~~~~~~l------~~~~V~~i~GD~td~~~L 666 (858)
..+.++|.|. |..|..++++|.+ .|..|.++... .++.+.+. .+....+ ...++.++.||.+|.+.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk---~G~~Vval~Rn--~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLK---LGFRVRAGVRS--AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 4467899998 5789999999964 57778877652 22222111 1000000 123477899999999998
Q ss_pred Hhc
Q 003003 667 KDT 669 (858)
Q Consensus 667 ~ea 669 (858)
+++
T Consensus 154 ~~a 156 (576)
T PLN03209 154 GPA 156 (576)
T ss_pred HHH
Confidence 875
No 367
>PLN02427 UDP-apiose/xylose synthase
Probab=31.82 E-value=1.3e+02 Score=34.04 Aligned_cols=70 Identities=10% Similarity=-0.103 Sum_probs=44.5
Q ss_pred CCCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 595 PKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 595 ~~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.+|+|.|. |-.|..+++.|.+. .|.+|..++..+ ++...+........ ...+.++.||.+|.+.++++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~r~~--~~~~~l~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~ 83 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALDVYN--DKIKHLLEPDTVPW-SGRIQFHRINIKHDSRLEGL 83 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEecCc--hhhhhhhccccccC-CCCeEEEEcCCCChHHHHHH
Confidence 3467999998 67899999999643 246787776422 22222111000001 12477899999999999876
No 368
>PRK08324 short chain dehydrogenase; Validated
Probab=31.70 E-value=1.4e+02 Score=36.95 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=46.2
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
..+.++|.|. |..|..++++|.+.+. .|+++ +++.+.++.+.+.+... .++.++.+|.++++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-------------~Vvl~-~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-------------CVVLA-DLDEEAAEAAAAELGGP---DRALGVACDVTDEA 483 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-------------EEEEE-eCCHHHHHHHHHHHhcc---CcEEEEEecCCCHH
Confidence 4567889995 7899999999987544 45544 77776666655433111 24566789999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 484 ~v~~~ 488 (681)
T PRK08324 484 AVQAA 488 (681)
T ss_pred HHHHH
Confidence 87664
No 369
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.55 E-value=1.8e+02 Score=32.70 Aligned_cols=73 Identities=10% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHhcccccccCCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCce
Q 003003 280 MQKLREGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHID 359 (858)
Q Consensus 280 ~~~lr~G~~~~v~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~ 359 (858)
+..-|+|. +..-..++|+|.|..|.--+.-....+. .+||+ +|..+..+|...+ + |.+
T Consensus 159 ~HAcr~~~---vk~Gs~vLV~GAGPIGl~t~l~Aka~GA------------~~VVi-~d~~~~Rle~Ak~-~-----Ga~ 216 (354)
T KOG0024|consen 159 VHACRRAG---VKKGSKVLVLGAGPIGLLTGLVAKAMGA------------SDVVI-TDLVANRLELAKK-F-----GAT 216 (354)
T ss_pred hhhhhhcC---cccCCeEEEECCcHHHHHHHHHHHHcCC------------CcEEE-eecCHHHHHHHHH-h-----CCe
Confidence 34445554 4556679999999999777666666544 36765 4887777776654 4 666
Q ss_pred EEEecCCCCCHHHHH
Q 003003 360 ILSKSCSLTLTKSYE 374 (858)
Q Consensus 360 Vv~~~Gd~~~~e~L~ 374 (858)
++.......+.+.+.
T Consensus 217 ~~~~~~~~~~~~~~~ 231 (354)
T KOG0024|consen 217 VTDPSSHKSSPQELA 231 (354)
T ss_pred EEeeccccccHHHHH
Confidence 665544433444433
No 370
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.37 E-value=5.3e+02 Score=25.55 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=56.2
Q ss_pred CceEEEEeC------CChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHhcCc-cccCeEEEecCCCCCccchHHHHH
Q 003003 330 KQRILLLSD------LPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAA-NKARAIIILPTKGDRYEVDTDAFL 402 (858)
Q Consensus 330 ~~~IVVL~d------~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~rA~i-~~A~aVIIl~~~~D~~e~Da~~l~ 402 (858)
+++|++..- .-...+..+++.. |.+|++ -|--..++..-++.+ ++++.|.+ +.-+-.+..+..-+.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~-----GfeVi~-~g~~~tp~e~v~aA~~~dv~vIgv-Ssl~g~h~~l~~~lv 84 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADA-----GFEVIN-LGLFQTPEEAVRAAVEEDVDVIGV-SSLDGGHLTLVPGLV 84 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhC-----CceEEe-cCCcCCHHHHHHHHHhcCCCEEEE-EeccchHHHHHHHHH
Confidence 456665521 2234455544432 788886 455566665555555 45665444 443222333444343
Q ss_pred HHHhcCCCCCCCCCcEEE-EEcCcccHHHHHhcCCCeEEehH
Q 003003 403 SVLALQPIPKMNSVPTIV-EVSNPNTCELLKSLSGLKVEPVE 443 (858)
Q Consensus 403 ~vLalr~~~~~~~~~iIa-ev~d~~~~~~l~~ag~d~Vi~~~ 443 (858)
-.|.-+.. .++.+++ -+--++..+.++..|.+.|+.|.
T Consensus 85 e~lre~G~---~~i~v~~GGvip~~d~~~l~~~G~~~if~pg 123 (143)
T COG2185 85 EALREAGV---EDILVVVGGVIPPGDYQELKEMGVDRIFGPG 123 (143)
T ss_pred HHHHHhCC---cceEEeecCccCchhHHHHHHhCcceeeCCC
Confidence 33433333 2344333 44555667789999999999883
No 371
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.22 E-value=1.9e+02 Score=30.87 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=20.2
Q ss_pred CCeEEEEccC---chHHHHHHHHHhcCc
Q 003003 294 SDHIIVCGVN---SHLSFILKQLNKYHE 318 (858)
Q Consensus 294 ~~HIII~G~~---~~~~~li~eL~~~~~ 318 (858)
...++|.|.+ ..|..++++|.+.+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~ 33 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA 33 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC
Confidence 4578899987 489999999988654
No 372
>PLN02583 cinnamoyl-CoA reductase
Probab=31.13 E-value=99 Score=33.70 Aligned_cols=70 Identities=6% Similarity=0.080 Sum_probs=44.4
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCch-hhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhccc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLD-DRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIM 671 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~-er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i 671 (858)
.++++|.|.+ ..+..++++|. ..|..|+.+...+.. +..+.+... .-.+.++.++.||.+|.+.+.++-.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll---~~G~~V~~~~R~~~~~~~~~~~~~l---~~~~~~~~~~~~Dl~d~~~~~~~l~ 77 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLL---SRGYTVHAAVQKNGETEIEKEIRGL---SCEEERLKVFDVDPLDYHSILDALK 77 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHH---hCCCEEEEEEcCchhhhHHHHHHhc---ccCCCceEEEEecCCCHHHHHHHHc
Confidence 4689999975 57999999996 457788776542111 111112211 0012346779999999999987743
No 373
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=31.03 E-value=3.8e+02 Score=31.29 Aligned_cols=24 Identities=8% Similarity=0.284 Sum_probs=20.5
Q ss_pred CCeEEEEccCchHHHHHHHHHhcC
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYH 317 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~ 317 (858)
..+++|+|.|+.+..+++.+....
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~ 148 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNP 148 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCc
Confidence 457999999999999999997643
No 374
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=30.82 E-value=6.6e+02 Score=29.60 Aligned_cols=24 Identities=13% Similarity=0.139 Sum_probs=20.9
Q ss_pred CCeEEEEccCchHHHHHHHHHhcC
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYH 317 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~ 317 (858)
..+++|+|.|+.+..++++|....
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~ 166 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEP 166 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCc
Confidence 457999999999999999997653
No 375
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=30.78 E-value=1.2e+02 Score=31.34 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=43.6
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.+ ..+..+++.|.+ .|..|.++...+.+.......++ .-.+.++.++.+|.++.+.+.++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~---~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 73 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAA---QGANVVINYASSEAGAEALVAEI---GALGGKALAVQGDVSDAESVERA 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCchhHHHHHHHHH---HhcCCceEEEEcCCCCHHHHHHH
Confidence 3678999976 468889999964 47777776654332111111111 11234677899999999988775
No 376
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=30.74 E-value=3.9e+02 Score=26.88 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=22.2
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
....+-|+|+|+.|..+++.|...+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~ 60 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGM 60 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCc
Confidence 47788899999999999999997654
No 377
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=30.71 E-value=5.8e+02 Score=30.98 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=46.5
Q ss_pred ccCCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 291 VLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 291 v~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
...+..++|+|.|..|..+++++....+. .+|-++ |.+++..- ....|..| .|.-.-.
T Consensus 113 ~~~~~r~lIiGAG~ag~~l~r~~~~~~~~-----------~pV~fi-Ddd~~~~g-------~~i~Gv~V---~g~~~i~ 170 (588)
T COG1086 113 KDNRIRLLIIGAGSAGDLLLRALRRDPEY-----------TPVAFL-DDDPDLTG-------MKIRGVPV---LGRIEIE 170 (588)
T ss_pred ccCCCceEEEcCchHHHHHHHHHHhCCCc-----------ceEEEE-CCChhhcC-------CEEeceee---echhHHH
Confidence 45678999999999999999999875441 245555 66553221 12224444 4554555
Q ss_pred HHHHhcCccccCeEEEecCC
Q 003003 371 KSYERAAANKARAIIILPTK 390 (858)
Q Consensus 371 e~L~rA~i~~A~aVIIl~~~ 390 (858)
+..++-+++ -++|..+.
T Consensus 171 ~~v~~~~~~---~iiiAips 187 (588)
T COG1086 171 RVVEELGIQ---LILIAIPS 187 (588)
T ss_pred HHHHHcCCc---eEEEecCC
Confidence 666666665 45555543
No 378
>PRK08251 short chain dehydrogenase; Provisional
Probab=30.60 E-value=1.1e+02 Score=31.78 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=43.6
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.++|.|... .+..+++.|.+ .|..|.++...+ ++.+.+ .++. ...++..++++.+|.++.+.++++
T Consensus 3 k~vlItGas~giG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAA---KGRDLALCARRT--DRLEELKAELL-ARYPGIKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHHHH-hhCCCceEEEEEcCCCCHHHHHHH
Confidence 5689999765 68889999964 466777776532 222222 1110 122355788899999999988765
No 379
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=30.56 E-value=95 Score=31.30 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=44.1
Q ss_pred cEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCC--chhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhcccc
Q 003003 598 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVP--LDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMN 672 (858)
Q Consensus 598 ~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p--~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~ 672 (858)
.+||.|. |..+..+++.|.+.. ...+.++...+ ..+..+.+.++ .-.+.+|.++..|.+|++.++++--.
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l---~~~g~~v~~~~~Dv~d~~~v~~~~~~ 74 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIREL---ESAGARVEYVQCDVTDPEAVAAALAQ 74 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHH---HHTT-EEEEEE--TTSHHHHHHHHHT
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHH---HhCCCceeeeccCccCHHHHHHHHHH
Confidence 4678874 457888999997653 55788888652 22333333332 12367899999999999999988433
No 380
>PRK09186 flagellin modification protein A; Provisional
Probab=30.53 E-value=1e+02 Score=32.15 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=43.4
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+ ..+..+++.|.+ .|..|.++...+ +..++...++.. ......+.++.+|.+|.+.++++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~---~g~~v~~~~r~~-~~~~~~~~~l~~-~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILE---AGGIVIAADIDK-EALNELLESLGK-EFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEecCh-HHHHHHHHHHHh-hcCCCceeEEEecCCCHHHHHHH
Confidence 3689999986 578999999964 577787776432 121111111100 11233456679999999988775
No 381
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=30.48 E-value=2.5e+02 Score=34.80 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=44.5
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ -.|..++++|.+.+. .|+++ +++.+..+.+.+.+.......++..+.+|.++++.
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga-------------~Vvi~-~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~ 479 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA-------------HVVLA-DLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQA 479 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-------------EEEEE-eCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHH
Confidence 5678888875 599999999987654 55554 67665555544332111111245566889998887
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 480 v~~a 483 (676)
T TIGR02632 480 VKAA 483 (676)
T ss_pred HHHH
Confidence 7665
No 382
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=30.37 E-value=1.3e+02 Score=31.42 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=43.6
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+ ..+..++++|.+ .|..|.++...+.++..+.+.+ . +..+.++.+|.++.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~---~G~~vi~~~r~~~~~~~~~~~~-----~-~~~~~~~~~D~~~~~~~~~~ 70 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAE---AGADIVGAGRSEPSETQQQVEA-----L-GRRFLSLTADLSDIEAIKAL 70 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEcCchHHHHHHHHHh-----c-CCceEEEECCCCCHHHHHHH
Confidence 4679999985 568899999964 5777888775322222222221 1 23467899999999988754
No 383
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=30.31 E-value=1e+02 Score=33.02 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=29.9
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~ 348 (858)
+|+|+|.|-.|..+++.|...+. ..++|+ |.|.-+...+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv------------g~i~iv-D~D~Ve~sNLn 40 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF------------GQIHVI-DMDTIDVSNLN 40 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC------------CeEEEE-eCCEEcchhhc
Confidence 58999999999999999998655 267766 66554444443
No 384
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=30.18 E-value=49 Score=33.38 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=25.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCC
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVP 632 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p 632 (858)
.-++++++|||+.+..+++.|.. .|..|++.+..|
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~---~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRG---LGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHH---TT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhh---CCCEEEEEECCh
Confidence 34789999999999999999974 477888888644
No 385
>PLN02591 tryptophan synthase
Probab=30.07 E-value=7.3e+02 Score=26.79 Aligned_cols=133 Identities=15% Similarity=0.204 Sum_probs=76.4
Q ss_pred eEEEEccCch-----HHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 296 HIIVCGVNSH-----LSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 296 HIII~G~~~~-----~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
-+|+.+|-+. ...+++++.+++. +=|++.|.+.++.+++.+.. ...|.+.++..---+.+
T Consensus 80 p~ilm~Y~N~i~~~G~~~F~~~~~~aGv-------------~GviipDLP~ee~~~~~~~~--~~~gl~~I~lv~Ptt~~ 144 (250)
T PLN02591 80 PIVLFTYYNPILKRGIDKFMATIKEAGV-------------HGLVVPDLPLEETEALRAEA--AKNGIELVLLTTPTTPT 144 (250)
T ss_pred CEEEEecccHHHHhHHHHHHHHHHHcCC-------------CEEEeCCCCHHHHHHHHHHH--HHcCCeEEEEeCCCCCH
Confidence 3667787553 3456777777655 22556788888887766543 12267766655444445
Q ss_pred HHHHhcCccccCeEEEecCCC---CCccchHHHHHHHHhcCCCCCCCCCcEEE--EEcCcccHHHHHhcCCCeEEehHHH
Q 003003 371 KSYERAAANKARAIIILPTKG---DRYEVDTDAFLSVLALQPIPKMNSVPTIV--EVSNPNTCELLKSLSGLKVEPVENV 445 (858)
Q Consensus 371 e~L~rA~i~~A~aVIIl~~~~---D~~e~Da~~l~~vLalr~~~~~~~~~iIa--ev~d~~~~~~l~~ag~d~Vi~~~~i 445 (858)
+-+++.....-..|-..+..+ .+...+.+.-..+-.+|+. .+.|+++ -++++++...+...|+|-||.-..+
T Consensus 145 ~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 145 ERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred HHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 666766555444443333221 1111112212112333443 4788877 6788999988888989888765544
Q ss_pred H
Q 003003 446 A 446 (858)
Q Consensus 446 ~ 446 (858)
+
T Consensus 222 V 222 (250)
T PLN02591 222 V 222 (250)
T ss_pred H
Confidence 3
No 386
>PRK06953 short chain dehydrogenase; Provisional
Probab=30.03 E-value=1.6e+02 Score=30.23 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=39.3
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYE 374 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~ 374 (858)
-++|.|. +..|..++++|.+.+. .++++ +++++..+++.. . + +.++.+|.++.+.++
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~-------------~v~~~-~r~~~~~~~~~~-~-----~--~~~~~~D~~~~~~v~ 60 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGW-------------RVIAT-ARDAAALAALQA-L-----G--AEALALDVADPASVA 60 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCC-------------EEEEE-ECCHHHHHHHHh-c-----c--ceEEEecCCCHHHHH
Confidence 4677775 5689999999987544 55554 666555555432 1 2 234578999988887
Q ss_pred hc
Q 003003 375 RA 376 (858)
Q Consensus 375 rA 376 (858)
++
T Consensus 61 ~~ 62 (222)
T PRK06953 61 GL 62 (222)
T ss_pred HH
Confidence 74
No 387
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=30.01 E-value=1.9e+02 Score=32.33 Aligned_cols=81 Identities=10% Similarity=0.172 Sum_probs=49.1
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh---HHHHHHHHhhccccCCceEEEecCCCCC
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR---KQMDKLAENIAKDLNHIDILSKSCSLTL 369 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~---~~me~l~~~~~~d~~~~~Vv~~~Gd~~~ 369 (858)
...|+|.|. |-.|..++++|.+.+. .|+.+...+. ...+.+.... ......++.++.||..+
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~-------------~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQ-------------TVIGLDNFSTGYQHNLDDVRTSV-SEEQWSRFIFIQGDIRK 80 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-------------EEEEEeCCCCcchhhhhhhhhcc-ccccCCceEEEEccCCC
Confidence 457999997 7799999999998654 4665532221 1122221111 00001235567899999
Q ss_pred HHHHHhcCccccCeEEEecC
Q 003003 370 TKSYERAAANKARAIIILPT 389 (858)
Q Consensus 370 ~e~L~rA~i~~A~aVIIl~~ 389 (858)
.+.|.++ +++++.||=++.
T Consensus 81 ~~~l~~~-~~~~d~ViHlAa 99 (348)
T PRK15181 81 FTDCQKA-CKNVDYVLHQAA 99 (348)
T ss_pred HHHHHHH-hhCCCEEEECcc
Confidence 9888766 346887665664
No 388
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=29.97 E-value=2.7e+02 Score=29.96 Aligned_cols=85 Identities=11% Similarity=0.155 Sum_probs=48.5
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
-+.|++|+|.|..+..+++.....+. +|+|+.+++. .... .++.+.+.+ ....+ .+.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf-------------~V~v~D~R~~-~~~~------~~~~~~~~~-~~~~~--~~~ 155 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPC-------------RVTWVDSREA-EFPE------DLPDGVATL-VTDEP--EAE 155 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCC-------------EEEEEeCCcc-cccc------cCCCCceEE-ecCCH--HHH
Confidence 47899999999999999998887554 6777644432 1111 111233222 22322 233
Q ss_pred HHhcCccccCeEEEecCCCCCccchHHHHHHHH
Q 003003 373 YERAAANKARAIIILPTKGDRYEVDTDAFLSVL 405 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vL 405 (858)
+.. +..-.+++|++.+. +-|...+..+|
T Consensus 156 ~~~--~~~~t~vvi~th~h---~~D~~~L~~aL 183 (246)
T TIGR02964 156 VAE--APPGSYFLVLTHDH---ALDLELCHAAL 183 (246)
T ss_pred Hhc--CCCCcEEEEEeCCh---HHHHHHHHHHH
Confidence 333 34445566666443 34777776666
No 389
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=29.75 E-value=74 Score=34.20 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=39.6
Q ss_pred cEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 598 RILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 598 ~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+|+|.|. |..|..++++|.+ .|.+|..+...+. +. ...+ +..+.||.+|.++|.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~---~g~~V~~~~R~~~--~~---------~~~~--~~~~~~d~~d~~~l~~a 57 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA---ASVPFLVASRSSS--SS---------AGPN--EKHVKFDWLDEDTWDNP 57 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh---CCCcEEEEeCCCc--cc---------cCCC--CccccccCCCHHHHHHH
Confidence 3788888 7889999999964 4667888775322 11 1112 34578999999999886
No 390
>PLN02686 cinnamoyl-CoA reductase
Probab=29.70 E-value=2e+02 Score=32.55 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=47.9
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHh--hccc-cCCceEEEecCCCC
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAEN--IAKD-LNHIDILSKSCSLT 368 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~--~~~d-~~~~~Vv~~~Gd~~ 368 (858)
+...|+|.|. |-.|..++++|.+.++ .|+++.. +.+..+.+.+. +... ..+.++.++.||.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-------------~V~~~~r-~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~ 117 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-------------SVRIAVD-TQEDKEKLREMEMFGEMGRSNDGIWTVMANLT 117 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-------------EEEEEeC-CHHHHHHHHHHhhhccccccCCceEEEEcCCC
Confidence 4567899988 5699999999998655 4555433 33333332110 0000 00113555689999
Q ss_pred CHHHHHhcCccccCeEEEe
Q 003003 369 LTKSYERAAANKARAIIIL 387 (858)
Q Consensus 369 ~~e~L~rA~i~~A~aVIIl 387 (858)
+.+.+.++ ++.++.++-+
T Consensus 118 d~~~l~~~-i~~~d~V~hl 135 (367)
T PLN02686 118 EPESLHEA-FDGCAGVFHT 135 (367)
T ss_pred CHHHHHHH-HHhccEEEec
Confidence 99988765 5567765533
No 391
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=29.03 E-value=1.7e+02 Score=35.19 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=30.0
Q ss_pred CCChhHHHHHhheeeeecccc---cccCCchhHHHHHHHHHHHHH
Q 003003 222 TQSLEDCLWEAWACLISSSTH---LKQRTRVERVIGFILAIWGIL 263 (858)
Q Consensus 222 ~~s~~da~w~a~~~vt~sg~g---~gd~T~~gRl~svvl~l~Gi~ 263 (858)
.+++.+-+|.......+.|.. ..+.|+.++++..++++.|=+
T Consensus 449 ~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~ 493 (559)
T PRK05482 449 PHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRF 493 (559)
T ss_pred CCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999766555444443 345678999988888877753
No 392
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=28.91 E-value=7.6e+02 Score=26.61 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=43.2
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
.+.|+|+|..|..+++.|...+. .-.++.+.+.+++..+.+.+.+ +..+ ..+.+.|.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~-----------~~elv~v~d~~~~~a~~~a~~~-----~~~~------~~~~~ell- 59 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRI-----------NAELYAFYDRNLEKAENLASKT-----GAKA------CLSIDELV- 59 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCC-----------CeEEEEEECCCHHHHHHHHHhc-----CCee------ECCHHHHh-
Confidence 58899999999999999876421 0145656688887777655422 2221 12344443
Q ss_pred cCccccCeEEEecC
Q 003003 376 AAANKARAIIILPT 389 (858)
Q Consensus 376 A~i~~A~aVIIl~~ 389 (858)
.++|.|++.++
T Consensus 60 ---~~~DvVvi~a~ 70 (265)
T PRK13304 60 ---EDVDLVVECAS 70 (265)
T ss_pred ---cCCCEEEEcCC
Confidence 57897777654
No 393
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=28.91 E-value=1.4e+02 Score=24.87 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.8
Q ss_pred CCCHHHHHccCC-ceEEEEEEECCEEEECCC---CCceecCCCEEEEEee
Q 003003 484 GIKYRQLRRGFQ-EAVVCGLYRNGKIYFHPN---DDETLQPTDKILFIAP 529 (858)
Q Consensus 484 G~tf~el~~~~~-~aivIGI~r~G~~~lnP~---~d~~L~~GD~LivIa~ 529 (858)
+.|+.++...+. +.-.+++..|+++ .|+ +++.|++||++-++..
T Consensus 14 ~~tl~~Ll~~l~~~~~~vavavN~~i--v~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 14 ATTLALLLAELDYEGNWLATAVNGEL--VHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred cCcHHHHHHHcCCCCCeEEEEECCEE--cCHHHcCccccCCCCEEEEEEe
Confidence 458888766543 2344566678984 365 4889999999988754
No 394
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=28.88 E-value=90 Score=30.21 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=45.1
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.+||.|.+. .+..+++.|.+. .+..|.++...++.++.+.+ .++ +-++.++.+++.|.++.+.+++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~~l---~~~~~~~~~~~~D~~~~~~~~~~ 70 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR--GARVVILTSRSEDSEGAQELIQEL---KAPGAKITFIECDLSDPESIRAL 70 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHHHH---HHTTSEEEEEESETTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CceEEEEeeecccccccccccccc---ccccccccccccccccccccccc
Confidence 4689999775 688999999754 24566666653223333322 222 12357788899999999998876
No 395
>PRK05993 short chain dehydrogenase; Provisional
Probab=28.61 E-value=78 Score=34.00 Aligned_cols=61 Identities=11% Similarity=-0.045 Sum_probs=42.0
Q ss_pred CCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|. |..+..+++.|.+ .|..|.++... .+..+.+. +..++++.+|.+|.+.++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~---~G~~Vi~~~r~--~~~~~~l~--------~~~~~~~~~Dl~d~~~~~~~ 65 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQS---DGWRVFATCRK--EEDVAALE--------AEGLEAFQLDYAEPESIAAL 65 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHH--------HCCceEEEccCCCHHHHHHH
Confidence 367999998 4578899999964 57778877653 22222221 12356789999999888765
No 396
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=28.49 E-value=1.4e+02 Score=31.06 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=43.4
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+. .+..+++.|.+ .|..+.+......+..++...+. +-...++++++.|.++.+.+.++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~ 74 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQ---EGAKVVINYNSSKEAAENLVNEL---GKEGHDVYAVQADVSKVEDANRL 74 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---cCCEEEEEcCCcHHHHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 47899999765 68889999964 46667665432222222222221 01124578899999999998876
No 397
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.46 E-value=1.4e+02 Score=30.88 Aligned_cols=66 Identities=6% Similarity=0.015 Sum_probs=44.4
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.+ ..+..++++|.+ .|..|+++...+. ...+....+. . +..++++.+|.+|.+.++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~---~G~~V~~~~r~~~-~~~~~~~~~~--~--~~~~~~~~~D~~~~~~~~~~ 71 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAA---EGARVVVTDRNEE-AAERVAAEIL--A--GGRAIAVAADVSDEADVEAA 71 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCHH-HHHHHHHHHh--c--CCeEEEEECCCCCHHHHHHH
Confidence 4688999975 578999999964 4777888876332 1111112110 1 34578899999999999876
No 398
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=28.46 E-value=1e+02 Score=26.45 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.4
Q ss_pred eEEEEccCchHHHHHHHHHhcCc
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~ 318 (858)
+++|+|.|..+..++..|...+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~ 23 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK 23 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc
Confidence 68999999999999999987554
No 399
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=28.42 E-value=4.8e+02 Score=28.63 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=44.7
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
+|-|+|.|..|..+++.|.+.++ .|++ .+++++..+.+.+. +... ..+.+++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-------------~V~~-~dr~~~~~~~l~~~------g~~~------~~s~~~~~~ 55 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-------------DCVG-YDHDQDAVKAMKED------RTTG------VANLRELSQ 55 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-------------EEEE-EECCHHHHHHHHHc------CCcc------cCCHHHHHh
Confidence 57899999999999999988654 4555 48888877776541 2111 134445443
Q ss_pred cCccccCeEEEecC
Q 003003 376 AAANKARAIIILPT 389 (858)
Q Consensus 376 A~i~~A~aVIIl~~ 389 (858)
+ +.+++.|+++.+
T Consensus 56 ~-~~~~dvIi~~vp 68 (298)
T TIGR00872 56 R-LSAPRVVWVMVP 68 (298)
T ss_pred h-cCCCCEEEEEcC
Confidence 2 457887766654
No 400
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=28.42 E-value=97 Score=35.23 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=47.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc------ccCCCCcCCceEEEEECCCCCHHHHH
Q 003003 594 GPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN------AIGHGKLKNVQVFHKIGNPLNFETLK 667 (858)
Q Consensus 594 ~~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~------~~~~~~l~~~~V~~i~GD~td~~~L~ 667 (858)
+..+++||+|+|.. -.++||.+| +.-.+|+.++-.| +..+..+ ..+...+.+.+|+.+.-|+.+ -|+
T Consensus 288 ~~a~~vLvlGGGDG--LAlRellky-P~~~qI~lVdLDP--~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--wlr 360 (508)
T COG4262 288 RGARSVLVLGGGDG--LALRELLKY-PQVEQITLVDLDP--RMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--WLR 360 (508)
T ss_pred cccceEEEEcCCch--HHHHHHHhC-CCcceEEEEecCH--HHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--HHH
Confidence 35799999999975 457888887 2356889888643 3333322 235567788888888888765 466
Q ss_pred hc
Q 003003 668 DT 669 (858)
Q Consensus 668 ea 669 (858)
.+
T Consensus 361 ~a 362 (508)
T COG4262 361 TA 362 (508)
T ss_pred hh
Confidence 65
No 401
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.36 E-value=1.3e+02 Score=31.34 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=42.0
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
++++|.|.+. .+..+++.|.+ .|..+.++.....+...+...+. +-.+.++.++.+|.+|++.++++
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~---~g~~v~~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 72 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAE---EGYDIAVNYARSRKAAEETAEEI---EALGRKALAVKANVGDVEKIKEM 72 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCCHHHHHHHHHHH---HhcCCeEEEEEcCCCCHHHHHHH
Confidence 5789999864 68899999964 46666664322221111111111 11234678899999999988775
No 402
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.34 E-value=2.5e+02 Score=35.55 Aligned_cols=99 Identities=9% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhheeeec---cCCCChhHHHHHhheeeeecc-cccccCCchhHHHHHHHHHH
Q 003003 185 FNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR---DETQSLEDCLWEAWACLISSS-THLKQRTRVERVIGFILAIW 260 (858)
Q Consensus 185 f~~~l~~n~~~~l~~ll~~~l~iv~ig~~l~~~~e---g~~~s~~da~w~a~~~vt~sg-~g~gd~T~~gRl~svvl~l~ 260 (858)
|.+++++-...++.+.+++.++++.++.+++..+. ....++.+++-..+-.+ -| ..+.+.-..+|++++++..+
T Consensus 581 ~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t~~~~~--~G~~~~~~i~~~~r~LG~~~~~~ 658 (798)
T KOG3599|consen 581 FSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVTLLRYI--LGDFCPAEIFHANRILGPLLFLT 658 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHHHHHHH--hccCCccccccCCchHHHHHHHH
Confidence 45555555666665555555555555555555553 22445666665332211 12 22333445666666654433
Q ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHh
Q 003003 261 GI-----LFYSRLLSTMTEQFRNNMQKLRE 285 (858)
Q Consensus 261 Gi-----~~fa~li~~it~~l~~~~~~lr~ 285 (858)
=+ +++.++.++|-+...+.-+.+.+
T Consensus 659 ~v~~v~~illnmF~aiI~~~~~evk~~~~~ 688 (798)
T KOG3599|consen 659 YVFVVSFILLNLFVAIINDTYGEVKADLAK 688 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence 22 22334445555555543333333
No 403
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=28.34 E-value=1.1e+02 Score=34.95 Aligned_cols=76 Identities=12% Similarity=0.140 Sum_probs=45.3
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHH--HHHhhccccCCceEEEecCCCCCHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDK--LAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~--l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
.|+|.|. |..|..++++|.+.++ .|+++ .++....+. ......... .++.++.||.++++.
T Consensus 62 kVLVtGatG~IG~~l~~~Ll~~G~-------------~V~~l-~R~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d~~~ 125 (390)
T PLN02657 62 TVLVVGATGYIGKFVVRELVRRGY-------------NVVAV-AREKSGIRGKNGKEDTKKEL--PGAEVVFGDVTDADS 125 (390)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-------------EEEEE-EechhhccccchhhHHhhhc--CCceEEEeeCCCHHH
Confidence 5788886 6799999999987654 56655 443322110 000000011 124456899999999
Q ss_pred HHhcCcc---ccCeEEEe
Q 003003 373 YERAAAN---KARAIIIL 387 (858)
Q Consensus 373 L~rA~i~---~A~aVIIl 387 (858)
++++--. .++.||.+
T Consensus 126 l~~~~~~~~~~~D~Vi~~ 143 (390)
T PLN02657 126 LRKVLFSEGDPVDVVVSC 143 (390)
T ss_pred HHHHHHHhCCCCcEEEEC
Confidence 9887332 57866643
No 404
>PRK08265 short chain dehydrogenase; Provisional
Probab=28.23 E-value=1.3e+02 Score=31.82 Aligned_cols=64 Identities=8% Similarity=0.021 Sum_probs=43.3
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.+ ..+..+++.|.+ .|..|.+++..+ ++..+...+ + +.++.++.+|.++.+.++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~~-~~~~~~~~~-----~-~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVA---AGARVAIVDIDA-DNGAAVAAS-----L-GERARFIATDITDDAAIERA 70 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH-HHHHHHHHH-----h-CCeeEEEEecCCCHHHHHHH
Confidence 4688999974 578999999964 577888876532 111111111 1 33577899999999988775
No 405
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=28.22 E-value=1.3e+02 Score=31.67 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=44.1
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+++||.|.+ ..+..+++.|.+ .|..|.+++..+ ++..+....+ +-.+.++.++.+|.+|++.++++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~---~G~~V~~~~r~~-~~~~~~~~~i---~~~~~~~~~~~~D~~~~~~~~~~ 77 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQ---AGAEVILNGRDP-AKLAAAAESL---KGQGLSAHALAFDVTDHDAVRAA 77 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHH---cCCEEEEEeCCH-HHHHHHHHHH---HhcCceEEEEEccCCCHHHHHHH
Confidence 4789999985 578899999964 577888776532 1111111111 01134577899999999988876
No 406
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=28.20 E-value=3.5e+02 Score=30.11 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=42.1
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecC--CCCCHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSC--SLTLTKSY 373 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~G--d~~~~e~L 373 (858)
.|.|+|.|..|..+.-.|.++++ +|+++ -+++. .+.+.++ |+.+....| .......-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~-------------~V~~~-~R~~~-~~~l~~~------GL~i~~~~~~~~~~~~~~~ 60 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGH-------------DVTLL-VRSRR-LEALKKK------GLRIEDEGGNFTTPVVAAT 60 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-------------eEEEE-ecHHH-HHHHHhC------CeEEecCCCcccccccccc
Confidence 47899999999999999998763 56655 45443 5555442 566554334 11122222
Q ss_pred HhcCccccCeEEEe
Q 003003 374 ERAAANKARAIIIL 387 (858)
Q Consensus 374 ~rA~i~~A~aVIIl 387 (858)
.......+|-|||.
T Consensus 61 ~~~~~~~~Dlviv~ 74 (307)
T COG1893 61 DAEALGPADLVIVT 74 (307)
T ss_pred ChhhcCCCCEEEEE
Confidence 23334477755443
No 407
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=28.11 E-value=1.1e+02 Score=29.56 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcc
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNA 642 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~ 642 (858)
..++++|+|-|..+..++..|.+.. -.+|+|++. ..+|.+.+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g--~~~i~i~nR--t~~ra~~l~~ 54 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG--AKEITIVNR--TPERAEALAE 54 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT--SSEEEEEES--SHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEEEC--CHHHHHHHHH
Confidence 4689999999999999999997652 345999997 4456555553
No 408
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.06 E-value=2e+02 Score=33.37 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=43.6
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCC-hHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~-~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|+|.|..|..+++.|.+.+. .|++. |.+ .+.+++..+++. ..+.++ +.|+..+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~-------------~V~~~-d~~~~~~~~~~~~~l~--~~~~~~--~~~~~~~~-- 64 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGA-------------KVILT-DEKEEDQLKEALEELG--ELGIEL--VLGEYPEE-- 64 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-------------EEEEE-eCCchHHHHHHHHHHH--hcCCEE--EeCCcchh--
Confidence 4678999999999999999998765 56655 543 344444333221 114443 45666551
Q ss_pred HHhcCccccCeEEEec
Q 003003 373 YERAAANKARAIIILP 388 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~ 388 (858)
....++.||+.+
T Consensus 65 ----~~~~~d~vv~~~ 76 (450)
T PRK14106 65 ----FLEGVDLVVVSP 76 (450)
T ss_pred ----HhhcCCEEEECC
Confidence 235678665533
No 409
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.99 E-value=1.9e+02 Score=30.98 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=37.3
Q ss_pred CeEEEEccC---chHHHHHHHHHhcCccccccccccCCCceEEEEeCCC---hHHHHHHHHhhccccCCceEEEecCCCC
Q 003003 295 DHIIVCGVN---SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP---RKQMDKLAENIAKDLNHIDILSKSCSLT 368 (858)
Q Consensus 295 ~HIII~G~~---~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~---~~~me~l~~~~~~d~~~~~Vv~~~Gd~~ 368 (858)
.-++|.|.+ ..|..++++|.+.+. .|++. .++ .+.++++.+++ +. +.++.+|.+
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~-------------~V~l~-~r~~~~~~~~~~l~~~~-----~~-~~~~~~Dl~ 70 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGA-------------ELAFT-YQGDALKKRVEPLAAEL-----GA-FVAGHCDVT 70 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCC-------------EEEEE-cCchHHHHHHHHHHHhc-----CC-ceEEecCCC
Confidence 457788984 699999999998654 55544 443 23344443322 11 223467777
Q ss_pred CHHHHHhc
Q 003003 369 LTKSYERA 376 (858)
Q Consensus 369 ~~e~L~rA 376 (858)
+++.++++
T Consensus 71 ~~~~v~~~ 78 (272)
T PRK08159 71 DEASIDAV 78 (272)
T ss_pred CHHHHHHH
Confidence 77666654
No 410
>PRK08017 oxidoreductase; Provisional
Probab=27.75 E-value=77 Score=33.19 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=41.2
Q ss_pred CcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.++|.|. |..+..+++.|.+ .|..+.++... .++.+.+. ...++++.+|.+|.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~---~g~~v~~~~r~--~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~ 63 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKR---RGYRVLAACRK--PDDVARMN--------SLGFTGILLDLDDPESVERA 63 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHhHHHH--------hCCCeEEEeecCCHHHHHHH
Confidence 56999999 7789999999964 46677777642 22222211 12356789999999887764
No 411
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=27.73 E-value=6.7e+02 Score=25.60 Aligned_cols=23 Identities=13% Similarity=0.405 Sum_probs=18.4
Q ss_pred CCeEEEEccCc---hHHHHHHHHHhc
Q 003003 294 SDHIIVCGVNS---HLSFILKQLNKY 316 (858)
Q Consensus 294 ~~HIII~G~~~---~~~~li~eL~~~ 316 (858)
-|.|++||.|. -.+.++.||...
T Consensus 41 G~Kvl~cGNGgSaadAqHfaael~gR 66 (176)
T COG0279 41 GNKVLACGNGGSAADAQHFAAELTGR 66 (176)
T ss_pred CCEEEEECCCcchhhHHHHHHHHhhH
Confidence 46799999997 468888888754
No 412
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.68 E-value=1.4e+02 Score=31.36 Aligned_cols=65 Identities=6% Similarity=0.019 Sum_probs=43.9
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.+||.|.+. .+..+++.|.+ .|..|.++.....++..+.+.+ .+.+++++.+|.++++.++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~---~G~~vv~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAK---AGADIVGVGVAEAPETQAQVEA------LGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEecCchHHHHHHHHHH------cCCeEEEEEeCCCCHHHHHHH
Confidence 46789999875 68889999964 5777887764322222222221 134577899999999988876
No 413
>PRK07856 short chain dehydrogenase; Provisional
Probab=27.50 E-value=1.9e+02 Score=30.27 Aligned_cols=59 Identities=5% Similarity=-0.050 Sum_probs=39.3
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
...++|.|.+ ..|..++++|.+.+. .|+++ +++++. . . .+.++.++.+|.++++.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~-------------~v~~~-~r~~~~--~---~-----~~~~~~~~~~D~~~~~~ 61 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA-------------TVVVC-GRRAPE--T---V-----DGRPAEFHAADVRDPDQ 61 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------------EEEEE-eCChhh--h---h-----cCCceEEEEccCCCHHH
Confidence 4567888875 589999999987654 45555 554432 1 0 02345566899998888
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 62 ~~~~ 65 (252)
T PRK07856 62 VAAL 65 (252)
T ss_pred HHHH
Confidence 7665
No 414
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=27.33 E-value=84 Score=30.03 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.8
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCc
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
+-+|+|+|.|..|..+++.|...+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv 26 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV 26 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC
Confidence 4589999999999999999998765
No 415
>PRK08703 short chain dehydrogenase; Provisional
Probab=27.29 E-value=2.2e+02 Score=29.51 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=29.2
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
..+++|+|.+ ..|..++++|.+.+. .|+++ +++++..+.+.+
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~-------------~V~~~-~r~~~~~~~~~~ 48 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA-------------TVILV-ARHQKKLEKVYD 48 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-------------EEEEE-eCChHHHHHHHH
Confidence 3578999875 589999999987544 55555 666655555443
No 416
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=27.28 E-value=1.6e+02 Score=31.52 Aligned_cols=43 Identities=26% Similarity=0.166 Sum_probs=30.3
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
.|-|+|.|..|..+++.|...+.. ...+. +.+++++..+.+.+
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~----------~~~v~-v~~r~~~~~~~~~~ 46 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVP----------AKDII-VSDPSPEKRAALAE 46 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCC----------cceEE-EEcCCHHHHHHHHH
Confidence 488999999999999999875420 01344 45777776666554
No 417
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.14 E-value=1.6e+02 Score=31.14 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=44.0
Q ss_pred CCcEEEEecc---ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR---PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~---~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|-|.+ ..+..++++|.+ .|..|.+.... ++..+.+.+ +....++++..|.+|.+..+++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~---~G~~Vi~~~r~--~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~v~~~ 73 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKD---QGATVIYTYQN--DRMKKSLQK-----LVDEEDLLVECDVASDESIERA 73 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHH---CCCEEEEecCc--hHHHHHHHh-----hccCceeEEeCCCCCHHHHHHH
Confidence 4689999986 689999999964 57778777542 222222222 2223567899999999988775
No 418
>PRK06914 short chain dehydrogenase; Provisional
Probab=27.08 E-value=1.4e+02 Score=31.83 Aligned_cols=67 Identities=6% Similarity=-0.019 Sum_probs=42.5
Q ss_pred CcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHh
Q 003003 597 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKD 668 (858)
Q Consensus 597 ~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~e 668 (858)
+++||.|.+ ..+..+++.|.+ .|..|.++...+ ++......+... .-.+.+++++.+|.+|++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~~---~G~~V~~~~r~~-~~~~~~~~~~~~-~~~~~~~~~~~~D~~d~~~~~~ 71 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAK---KGYLVIATMRNP-EKQENLLSQATQ-LNLQQNIKVQQLDVTDQNSIHN 71 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHh---CCCEEEEEeCCH-HHHHHHHHHHHh-cCCCCceeEEecCCCCHHHHHH
Confidence 578999975 578899999964 577888876532 211111111100 0113457889999999998876
No 419
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.06 E-value=2.8e+02 Score=31.59 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=22.4
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCc
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
+-+|+|+|.|..|..+++.|...+.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGV 159 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC
Confidence 5689999999999999999998765
No 420
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=27.04 E-value=63 Score=35.72 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=28.1
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDK 346 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~ 346 (858)
+|.|+|.|..|..++..|...+.. ..++++ |.+++..+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~-----------~ei~l~-D~~~~~~~~ 40 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIA-----------DELVLI-DINEEKAEG 40 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCC-----------CEEEEE-eCCcchhhH
Confidence 689999999999999999875431 256665 765544443
No 421
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=26.97 E-value=4.7e+02 Score=24.96 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=25.5
Q ss_pred cEEEEeccccHHHHHHHHhcccCCCceEEEEcCC
Q 003003 598 RILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 631 (858)
Q Consensus 598 ~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~ 631 (858)
+|+|+|-|..+..+++.|..... ..+++++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv--~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV--GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEEEcCC
Confidence 68999999999999999975422 368888753
No 422
>PRK06128 oxidoreductase; Provisional
Probab=26.77 E-value=2.6e+02 Score=30.39 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=41.0
Q ss_pred CCeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeC-CChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSD-LPRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d-~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
...++|.|.+ ..|..++++|.+.+. .|++..- .+....+++.+... . .+.++.++.+|.++.+
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-------------~V~i~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~~~~ 119 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-------------DIALNYLPEEEQDAAEVVQLIQ-A-EGRKAVALPGDLKDEA 119 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-------------EEEEEeCCcchHHHHHHHHHHH-H-cCCeEEEEecCCCCHH
Confidence 3568888875 589999999998654 4554421 12222333222211 1 1445667789999988
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
.++++
T Consensus 120 ~v~~~ 124 (300)
T PRK06128 120 FCRQL 124 (300)
T ss_pred HHHHH
Confidence 77665
No 423
>PLN00015 protochlorophyllide reductase
Probab=26.68 E-value=1.9e+02 Score=31.68 Aligned_cols=63 Identities=13% Similarity=0.020 Sum_probs=37.3
Q ss_pred EEEccCc-hHHHHHHHHHhcC-ccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 298 IVCGVNS-HLSFILKQLNKYH-EFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 298 II~G~~~-~~~~li~eL~~~~-~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
||+|.+. .|..++++|.+.+ . .|++ ..++++..+++.+..... +.++.++..|.++.+.+++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~-------------~V~~-~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~ 64 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKW-------------HVVM-ACRDFLKAERAAKSAGMP--KDSYTVMHLDLASLDSVRQ 64 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCC-------------EEEE-EeCCHHHHHHHHHHhcCC--CCeEEEEEecCCCHHHHHH
Confidence 4677654 8999999998865 3 4554 466666555554432111 2234455667777666655
Q ss_pred c
Q 003003 376 A 376 (858)
Q Consensus 376 A 376 (858)
+
T Consensus 65 ~ 65 (308)
T PLN00015 65 F 65 (308)
T ss_pred H
Confidence 4
No 424
>PLN02650 dihydroflavonol-4-reductase
Probab=26.65 E-value=5.1e+02 Score=28.71 Aligned_cols=69 Identities=9% Similarity=-0.063 Sum_probs=42.6
Q ss_pred CCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+++|||.|. |-.+..++++|.+ .|.+|+++...+. ....+.......-.+.+++++.||.++.+.+.++
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~---~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~ 74 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLE---RGYTVRATVRDPA--NVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA 74 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHH---CCCEEEEEEcCcc--hhHHHHHHHhccCCCCceEEEEecCCChhhHHHH
Confidence 568999998 5689999999964 4667776653211 1111111000000112577899999999988876
No 425
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=26.54 E-value=1.5e+02 Score=30.80 Aligned_cols=67 Identities=10% Similarity=-0.000 Sum_probs=42.5
Q ss_pred CcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.++|.|.+ ..+..+++.|.+ .|..+++..........+.+.+. .-.+.++..+.+|.+|.+.++++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~---~G~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 71 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHK---DGFKVVAGCGPNSPRRVKWLEDQ---KALGFDFIASEGNVGDWDSTKAA 71 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHH---cCCEEEEEcCCChHHHHHHHHHH---HhcCCcEEEEEcCCCCHHHHHHH
Confidence 567889875 578899999964 46667665432222222222221 11244567789999999988876
No 426
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.50 E-value=2.6e+02 Score=29.71 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=19.9
Q ss_pred CCeEEEEccCc---hHHHHHHHHHhcCc
Q 003003 294 SDHIIVCGVNS---HLSFILKQLNKYHE 318 (858)
Q Consensus 294 ~~HIII~G~~~---~~~~li~eL~~~~~ 318 (858)
...++|.|.++ .|..++++|.+.+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~ 35 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGA 35 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCC
Confidence 45688999974 89999999987654
No 427
>PLN00198 anthocyanidin reductase; Provisional
Probab=26.48 E-value=2.8e+02 Score=30.54 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=47.6
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHH--HhhccccCCceEEEecCCCCCH
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA--ENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~--~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
...|+|.|. |-.|..++++|.+.+. .|+++. ++........ ..+ ... -++.++.||..+.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-------------~V~~~~-r~~~~~~~~~~~~~~-~~~--~~~~~~~~Dl~d~ 71 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-------------AVNTTV-RDPENQKKIAHLRAL-QEL--GDLKIFGADLTDE 71 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-------------EEEEEE-CCCCCHHHHHHHHhc-CCC--CceEEEEcCCCCh
Confidence 456899985 5699999999998654 454443 2221111111 111 111 1355668999999
Q ss_pred HHHHhcCccccCeEEEecC
Q 003003 371 KSYERAAANKARAIIILPT 389 (858)
Q Consensus 371 e~L~rA~i~~A~aVIIl~~ 389 (858)
+.+.++ +++++.||-++.
T Consensus 72 ~~~~~~-~~~~d~vih~A~ 89 (338)
T PLN00198 72 ESFEAP-IAGCDLVFHVAT 89 (338)
T ss_pred HHHHHH-HhcCCEEEEeCC
Confidence 988775 356787776765
No 428
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=26.45 E-value=2.9e+02 Score=31.97 Aligned_cols=91 Identities=11% Similarity=0.256 Sum_probs=40.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhheeeec---cCCCChhHHHHHhheeeeecccccccCC----chhHHHHHHH
Q 003003 185 FNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFR---DETQSLEDCLWEAWACLISSSTHLKQRT----RVERVIGFIL 257 (858)
Q Consensus 185 f~~~l~~n~~~~l~~ll~~~l~iv~ig~~l~~~~e---g~~~s~~da~w~a~~~vt~sg~g~gd~T----~~gRl~svvl 257 (858)
+-+.+.+....++.++++.+++++..+.+++..+. ....|+..++...+.++. ...++++.. ..|.++-+..
T Consensus 324 ~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~tl~~~l~-g~~~~~~~~~~~~~lg~l~~~~~ 402 (425)
T PF08016_consen 324 LSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVTLFRMLL-GDFDYDELYQANPVLGPLFFFSF 402 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHHHHHHhc-CCCchhhhhcccccHHHHHHHHH
Confidence 44445444444444444443333333333333331 234578888875544332 223555533 3444444443
Q ss_pred HHHHH-HHHHHHHHHHHHHH
Q 003003 258 AIWGI-LFYSRLLSTMTEQF 276 (858)
Q Consensus 258 ~l~Gi-~~fa~li~~it~~l 276 (858)
++.-+ +++-++++++.+..
T Consensus 403 ~~~~~~illNl~iaIi~~~y 422 (425)
T PF08016_consen 403 MFLVFFILLNLFIAIINDSY 422 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33322 33445556655544
No 429
>PRK09135 pteridine reductase; Provisional
Probab=26.34 E-value=1.4e+02 Score=30.77 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=43.8
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~-~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+++||.|.+. .+..+++.|.+ .|..|.++...+. +..+.+. .+ .......++++.+|.+|.+.++++
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~---~g~~v~~~~r~~~-~~~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~ 75 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHA---AGYRVAIHYHRSA-AEADALAAEL--NALRPGSAAALQADLLDPDALPEL 75 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCCH-HHHHHHHHHH--HhhcCCceEEEEcCCCCHHHHHHH
Confidence 36799999864 78899999964 5778888875322 1111111 10 011123467899999999988875
No 430
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=26.31 E-value=1.8e+02 Score=29.96 Aligned_cols=67 Identities=16% Similarity=-0.050 Sum_probs=42.1
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.++|.|.+. .+..+++.|.+ .|..+.++...+.++..+..... ...+.++.++.+|.++.+.++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~---~g~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~v~~~ 70 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLN---DGYRVIATYFSGNDCAKDWFEEY---GFTEDQVRLKELDVTDTEECAEA 70 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCcHHHHHHHHHHh---hccCCeEEEEEcCCCCHHHHHHH
Confidence 5788888664 68899999964 46677776543221111111111 11234578899999999988775
No 431
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.28 E-value=2.7e+02 Score=29.81 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=20.7
Q ss_pred CCeEEEEccC---chHHHHHHHHHhcCc
Q 003003 294 SDHIIVCGVN---SHLSFILKQLNKYHE 318 (858)
Q Consensus 294 ~~HIII~G~~---~~~~~li~eL~~~~~ 318 (858)
...+||.|.+ -.|..++++|.+.+.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga 34 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGA 34 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 4578889997 599999999998654
No 432
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=26.18 E-value=1.8e+02 Score=27.81 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=36.1
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh--HHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR--KQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~--~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
+++|.|. +..|..++++|.+.+. ..|+++...++ +......+.+... +.++.++.+|.++++.
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~------------~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 67 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGA------------RHLVLLSRSGPDAPGAAELLAELEAL--GAEVTVVACDVADRAA 67 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhC------------CeEEEEeCCCCCCccHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence 5778876 4689999999987543 13444432211 1111101111111 3456666788888777
Q ss_pred HHhc
Q 003003 373 YERA 376 (858)
Q Consensus 373 L~rA 376 (858)
++++
T Consensus 68 ~~~~ 71 (180)
T smart00822 68 LAAA 71 (180)
T ss_pred HHHH
Confidence 6654
No 433
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=26.15 E-value=2.2e+02 Score=30.13 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=19.4
Q ss_pred CeEEEEccC---chHHHHHHHHHhcCc
Q 003003 295 DHIIVCGVN---SHLSFILKQLNKYHE 318 (858)
Q Consensus 295 ~HIII~G~~---~~~~~li~eL~~~~~ 318 (858)
..++|.|.+ ..|..++++|.+.+.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~ 33 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGA 33 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCC
Confidence 467889974 699999999998654
No 434
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.05 E-value=2.5e+02 Score=30.22 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=37.7
Q ss_pred CCeEEEEccC---chHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh---HHHHHHHHhhccccCCceEEEecCCC
Q 003003 294 SDHIIVCGVN---SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR---KQMDKLAENIAKDLNHIDILSKSCSL 367 (858)
Q Consensus 294 ~~HIII~G~~---~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~---~~me~l~~~~~~d~~~~~Vv~~~Gd~ 367 (858)
...++|.|.+ ..|..+++.|.+.+. .|++ .+++. +.++++.+++ +.. .+...|.
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~-------------~Vil-~~r~~~~~~~~~~~~~~~-----~~~-~~~~~Dv 64 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA-------------ELAF-TYLNEALKKRVEPIAQEL-----GSD-YVYELDV 64 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC-------------EEEE-EecCHHHHHHHHHHHHhc-----CCc-eEEEecC
Confidence 4578999985 589999999988654 4554 45553 2334333322 111 2345677
Q ss_pred CCHHHHHhc
Q 003003 368 TLTKSYERA 376 (858)
Q Consensus 368 ~~~e~L~rA 376 (858)
++.+..+++
T Consensus 65 ~d~~~v~~~ 73 (274)
T PRK08415 65 SKPEHFKSL 73 (274)
T ss_pred CCHHHHHHH
Confidence 776665543
No 435
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=25.93 E-value=1.4e+02 Score=31.12 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=43.8
Q ss_pred CcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
++++|.|.+ ..+..+++.|.+ .|..|.++...+. ...+...+. .-.+.+++++.+|-++.+.++++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~---~g~~v~~~~r~~~-~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAK---EGAKVVIADLNDE-AAAAAAEAL---QKAGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHH---CCCeEEEEeCCHH-HHHHHHHHH---HhcCCcEEEEEcCCCCHHHHHHH
Confidence 689999975 578899999964 5778888875322 111111111 01234577899999999998775
No 436
>PRK06138 short chain dehydrogenase; Provisional
Probab=25.93 E-value=1.6e+02 Score=30.50 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=44.4
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+ ..+..++++|.+ .|..|.++...+ +...+...+. . .+.++.++.+|.+|.+.++++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~---~G~~v~~~~r~~-~~~~~~~~~~---~-~~~~~~~~~~D~~~~~~~~~~ 71 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAR---EGARVVVADRDA-EAAERVAAAI---A-AGGRAFARQGDVGSAEAVEAL 71 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH---CCCeEEEecCCH-HHHHHHHHHH---h-cCCeEEEEEcCCCCHHHHHHH
Confidence 4688999986 468899999964 477788777532 2222222211 1 234578899999999998875
No 437
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=25.89 E-value=42 Score=37.94 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhheeeeccCCCChhHHHHHhheeeeeccccccc----CCch---hHHHHHHHHHHHH-HHHHH
Q 003003 201 AVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLKQ----RTRV---ERVIGFILAIWGI-LFYSR 267 (858)
Q Consensus 201 l~~~l~iv~ig~~l~~~~eg~~~s~~da~w~a~~~vt~sg~g~gd----~T~~---gRl~svvl~l~Gi-~~fa~ 267 (858)
+++.+++++++++++...+ .+..+.|++..+...+.+.|.+.|. -+.. ++++.+++|+.|= -++++
T Consensus 272 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRle~~~~ 345 (354)
T PF02386_consen 272 FFLYFIIVFISTLLLSLDG-LDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRLEILPV 345 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHS-S-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCccHHHH
Confidence 3333445555555554443 2222799999888777666654443 2234 8988888777663 44433
No 438
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=25.81 E-value=1.6e+02 Score=36.28 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=46.0
Q ss_pred CCCeEEEEcc-CchHHHHHHHHHhc-CccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 293 ESDHIIVCGV-NSHLSFILKQLNKY-HEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 293 ~~~HIII~G~-~~~~~~li~eL~~~-~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
...+|+|.|. |-.|..++++|.+. ++ .|+.+ +++......+.. ..++-++.||..+.
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-------------~V~~l-~r~~~~~~~~~~-------~~~~~~~~gDl~d~ 372 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNY-------------EVYGL-DIGSDAISRFLG-------HPRFHFVEGDISIH 372 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCc-------------EEEEE-eCCchhhhhhcC-------CCceEEEeccccCc
Confidence 3557999996 77999999999974 33 56666 443332222111 11344568999986
Q ss_pred HHHHhcCccccCeEEEec
Q 003003 371 KSYERAAANKARAIIILP 388 (858)
Q Consensus 371 e~L~rA~i~~A~aVIIl~ 388 (858)
+.+.+.-++.++.||=++
T Consensus 373 ~~~l~~~l~~~D~ViHlA 390 (660)
T PRK08125 373 SEWIEYHIKKCDVVLPLV 390 (660)
T ss_pred HHHHHHHhcCCCEEEECc
Confidence 654333356788766444
No 439
>PRK06179 short chain dehydrogenase; Provisional
Probab=25.81 E-value=1.1e+02 Score=32.31 Aligned_cols=58 Identities=14% Similarity=-0.021 Sum_probs=40.9
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.++|.|.+. .+..++++|.+ .|..|.++...+ +..+ .. ..++++.+|.+|.+.++++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~---~g~~V~~~~r~~--~~~~--------~~--~~~~~~~~D~~d~~~~~~~ 63 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR---AGYRVFGTSRNP--ARAA--------PI--PGVELLELDVTDDASVQAA 63 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH---CCCEEEEEeCCh--hhcc--------cc--CCCeeEEeecCCHHHHHHH
Confidence 5789998764 68889999964 577888777532 1111 12 2356799999999999886
No 440
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.65 E-value=1.7e+02 Score=31.03 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=44.0
Q ss_pred CCcEEEEecc---ccHHHHHHHHhcccCCCceEEEEcCCC-chhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR---PDVVEMIEEYDNYLGPGSVLEILSDVP-LDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~---~~~~~li~eL~~~~~~gs~I~Ii~~~p-~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.+ ..+..++++|.+ .|..|.+..... .+++-+.+.+ .++..++.++..|.+|++..+++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~---~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHN---AGAKLVFTYAGERLEKEVRELAD----TLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH---CCCEEEEecCcccchHHHHHHHH----HcCCCceEEEecCCCCHHHHHHH
Confidence 4689999984 789999999964 577777765311 1122112211 12234567789999999988765
No 441
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=25.57 E-value=1.4e+02 Score=31.62 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=44.0
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.+||.|.++ .+..++++|.+ .|..|.++... .++..+.+ .++. ...+.+++++..|.+|.+.++++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~---~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~ 77 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQ---SGVNIAFTYNS-NVEEANKIAEDLE--QKYGIKAKAYPLNILEPETYKEL 77 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCC-CHHHHHHHHHHHH--HhcCCceEEEEcCCCCHHHHHHH
Confidence 46889999875 68899999964 57777776532 22222211 1110 11245678899999999988775
No 442
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=25.52 E-value=4.3e+02 Score=25.08 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCC
Q 003003 596 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDV 631 (858)
Q Consensus 596 ~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~ 631 (858)
..+|+|+|-|..+..+++.|..... ..++|++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv--~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV--GKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC--CceeecCCc
Confidence 4689999999999999999976532 368888863
No 443
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=25.49 E-value=1.1e+02 Score=34.64 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=42.1
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCC-hHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP-RKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~-~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
-.-+||||||..|.-++..|...+. . |++.|.| -.++|...+ |.+|+.
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA-------------~-ViVtEvDPI~AleA~Md-------Gf~V~~---------- 257 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGA-------------R-VIVTEVDPIRALEAAMD-------GFRVMT---------- 257 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCC-------------e-EEEEecCchHHHHHhhc-------CcEEEE----------
Confidence 4568899999999999999876543 3 4456765 466666554 788874
Q ss_pred HHhcCccccCeEEEecC
Q 003003 373 YERAAANKARAIIILPT 389 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~ 389 (858)
+++| +..|+ |+|.++
T Consensus 258 m~~A-a~~gD-ifiT~T 272 (420)
T COG0499 258 MEEA-AKTGD-IFVTAT 272 (420)
T ss_pred hHHh-hhcCC-EEEEcc
Confidence 2222 56677 556554
No 444
>PRK12828 short chain dehydrogenase; Provisional
Probab=25.43 E-value=1.2e+02 Score=31.00 Aligned_cols=65 Identities=3% Similarity=-0.104 Sum_probs=41.9
Q ss_pred CCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|. |..+..+++.|.+ .|..|.++...+.. ..+.+.+ +....+.++.+|.+|.+.++++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~---~G~~v~~~~r~~~~-~~~~~~~-----~~~~~~~~~~~D~~~~~~~~~~ 72 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAA---RGARVALIGRGAAP-LSQTLPG-----VPADALRIGGIDLVDPQAARRA 72 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHH---CCCeEEEEeCChHh-HHHHHHH-----HhhcCceEEEeecCCHHHHHHH
Confidence 367899987 4678899999964 47778887753221 1111111 2222345688999999988765
No 445
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=25.23 E-value=2.3e+02 Score=29.77 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=44.0
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|... .+..++++|.+ .|..|.+++....++..+.+.. . +.++++++.|.+|.+.++++
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~---~G~~vv~~~~~~~~~~~~~~~~-----~-~~~~~~~~~Dl~~~~~~~~~ 75 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAE---AGCDIVGINIVEPTETIEQVTA-----L-GRRFLSLTADLRKIDGIPAL 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEecCcchHHHHHHHHh-----c-CCeEEEEECCCCCHHHHHHH
Confidence 36889999885 78899999964 4777777754322222222221 1 34577899999999888875
No 446
>PRK06182 short chain dehydrogenase; Validated
Probab=25.22 E-value=93 Score=33.17 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=41.9
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.+ ..+..++++|.+ .|..|.++...+ ++.+.+. ...++++.+|.+|.+.++++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~---~G~~V~~~~r~~--~~l~~~~--------~~~~~~~~~Dv~~~~~~~~~ 64 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAA---QGYTVYGAARRV--DKMEDLA--------SLGVHPLSLDVTDEASIKAA 64 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHH--------hCCCeEEEeeCCCHHHHHHH
Confidence 3678999974 578899999964 577788776532 2222211 12356799999999988775
No 447
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=25.20 E-value=1.6e+02 Score=24.46 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=31.4
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECC--CCCceecCCCEEEEEee
Q 003003 483 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHP--NDDETLQPTDKILFIAP 529 (858)
Q Consensus 483 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP--~~d~~L~~GD~LivIa~ 529 (858)
.|.|+.|+...+. ...-+++.-||++ +.+ -.++.|++||++=++..
T Consensus 14 ~~~tl~~lL~~l~~~~~~vav~vNg~i-v~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 14 DGESVAALLAREGLAGRRVAVEVNGEI-VPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred CCCCHHHHHHhcCCCCCeEEEEECCeE-eCHHHcCcccCCCCCEEEEEEE
Confidence 4789999876544 3344556668885 322 26789999999977653
No 448
>PLN02240 UDP-glucose 4-epimerase
Probab=25.00 E-value=3.3e+02 Score=30.09 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=48.1
Q ss_pred CCeEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCC---hHHHHHHHHhhccccCCceEEEecCCCCC
Q 003003 294 SDHIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLP---RKQMDKLAENIAKDLNHIDILSKSCSLTL 369 (858)
Q Consensus 294 ~~HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~---~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~ 369 (858)
...|+|.|. |-.|..++++|.+.++ .|+++.... .+..+.+.+... . .+.++.++.||.++
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-------------~V~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~D~~~ 69 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY-------------KVVVIDNLDNSSEEALRRVKELAG-D-LGDNLVFHKVDLRD 69 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------------EEEEEeCCCcchHHHHHHHHHhhc-c-cCccceEEecCcCC
Confidence 457999987 6799999999998654 566663221 111222221110 0 02234556899999
Q ss_pred HHHHHhcCc-cccCeEEEecC
Q 003003 370 TKSYERAAA-NKARAIIILPT 389 (858)
Q Consensus 370 ~e~L~rA~i-~~A~aVIIl~~ 389 (858)
++.++++-- ...+.||-++.
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~ 90 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAG 90 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccc
Confidence 999877622 25676665553
No 449
>PLN02572 UDP-sulfoquinovose synthase
Probab=24.99 E-value=1.9e+02 Score=33.89 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=43.6
Q ss_pred CCCCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCC--chhhh-------------hhhcccCCCCcCCceEEEEE
Q 003003 594 GPKERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVP--LDDRK-------------RASNAIGHGKLKNVQVFHKI 657 (858)
Q Consensus 594 ~~~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p--~~er~-------------~~l~~~~~~~l~~~~V~~i~ 657 (858)
...++|||.|. |-.|..+++.|.+ .|..|++++... ..+.. +.+..+ ....+..++++.
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~v~~v~ 119 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSK---RGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRW--KEVSGKEIELYV 119 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHH---CCCeEEEEeccccccccccccccccccccchHHHHHHH--HHhhCCcceEEE
Confidence 34567999998 5689999999964 477788875311 00000 000000 001122477899
Q ss_pred CCCCCHHHHHhc
Q 003003 658 GNPLNFETLKDT 669 (858)
Q Consensus 658 GD~td~~~L~ea 669 (858)
||-+|.+.++++
T Consensus 120 ~Dl~d~~~v~~~ 131 (442)
T PLN02572 120 GDICDFEFLSEA 131 (442)
T ss_pred CCCCCHHHHHHH
Confidence 999999988876
No 450
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=24.96 E-value=4.2e+02 Score=28.98 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.9
Q ss_pred cCCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 292 LESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 292 ~~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
..+-||+|+|.|-.|..+++.|...+.
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GV 54 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGI 54 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCC
Confidence 357799999999999999999998764
No 451
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.87 E-value=1.6e+02 Score=30.20 Aligned_cols=67 Identities=6% Similarity=-0.089 Sum_probs=41.6
Q ss_pred CcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+++||.|.. ..+..+++.|.+ .|..+.++...+.+ ..+.+... ....+.+++++.+|.++.+.++++
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~---~g~~v~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~ 74 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLAR---AGADVVVHYRSDEE-AAEELVEA--VEALGRRAQAVQADVTDKAALEAA 74 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCCHH-HHHHHHHH--HHhcCCceEEEECCcCCHHHHHHH
Confidence 579999875 468899999964 46566664443222 21111110 011134577899999999988875
No 452
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=24.83 E-value=1.8e+02 Score=30.78 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=43.3
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.+. .+..+++.|.+ .|..|.+++.. +++.+.+.+ ..+.+++++.+|.++.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~--~~~~~~l~~-----~~~~~~~~~~~D~~~~~~~~~~ 69 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVA---EGARVAVLDKS--AAGLQELEA-----AHGDAVVGVEGDVRSLDDHKEA 69 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHh-----hcCCceEEEEeccCCHHHHHHH
Confidence 47889999875 68899999964 57788887652 222222221 1123577899999998877765
No 453
>PRK12937 short chain dehydrogenase; Provisional
Probab=24.82 E-value=1.9e+02 Score=29.88 Aligned_cols=67 Identities=4% Similarity=-0.029 Sum_probs=42.5
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhh-cccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRAS-NAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l-~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+ ..+..+++.|.+ .|..+.++.... ++..+.+ .++ .-.+.+++++..|.++.+.++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~---~g~~v~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAA---DGFAVAVNYAGS-AAAADELVAEI---EAAGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEecCCC-HHHHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHH
Confidence 4789999985 578899999964 466666654321 1111111 111 11234678899999999988775
No 454
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.81 E-value=2.9e+02 Score=32.43 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.5
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
...+++|+|.|..|..+++.|...+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~ 40 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA 40 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 35689999999999999988876544
No 455
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=24.79 E-value=2.7e+02 Score=30.85 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=47.6
Q ss_pred eEEEEcc-CchHHHHHHHHHhcCccccccccccCCCceEEEEeCCCh----HHHHHHHHhhccccCCceEEEecCCCCCH
Q 003003 296 HIIVCGV-NSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPR----KQMDKLAENIAKDLNHIDILSKSCSLTLT 370 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~----~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~ 370 (858)
.++|.|. |-.|..++++|.+.+. .|+++...+. +.++.+.+.. .+..+.++.++.||.++.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~-------------~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~ 67 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGY-------------EVHGLIRRSSSFNTQRIEHIYEDP-HNVNKARMKLHYGDLTDS 67 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCC-------------EEEEEecCCcccchhhhhhhhhcc-ccccccceeEEEeccCCH
Confidence 5788987 6699999999998655 5666532221 2233222110 000022355668999999
Q ss_pred HHHHhcCcc-ccCeEEEecC
Q 003003 371 KSYERAAAN-KARAIIILPT 389 (858)
Q Consensus 371 e~L~rA~i~-~A~aVIIl~~ 389 (858)
+.+.++=-. +.+.||=++.
T Consensus 68 ~~l~~~~~~~~~d~ViH~Aa 87 (343)
T TIGR01472 68 SNLRRIIDEIKPTEIYNLAA 87 (343)
T ss_pred HHHHHHHHhCCCCEEEECCc
Confidence 988776333 3576655554
No 456
>PRK05884 short chain dehydrogenase; Provisional
Probab=24.75 E-value=1.3e+02 Score=31.14 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=40.3
Q ss_pred cEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 598 RILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 598 ~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+++|.|.+ ..+..+++.|.+ .|..|.+++.. +++.+.+.+ ...++++.+|.++.+.++++
T Consensus 2 ~vlItGas~giG~~ia~~l~~---~g~~v~~~~r~--~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~ 62 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRN---DGHKVTLVGAR--RDDLEVAAK-------ELDVDAIVCDNTDPASLEEA 62 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH-------hccCcEEecCCCCHHHHHHH
Confidence 47888885 578899999963 57778887652 233222211 11345688999999998876
No 457
>PRK07831 short chain dehydrogenase; Provisional
Probab=24.70 E-value=1.5e+02 Score=31.24 Aligned_cols=69 Identities=7% Similarity=-0.065 Sum_probs=43.3
Q ss_pred CCcEEEEecc--ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR--PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~--~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.+ ..+..+++.|.+ .|..|.+.+..+ +...+...++. ..+...++.++.+|.++.+.++++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~---~G~~V~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALE---EGARVVISDIHE-RRLGETADELA-AELGLGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHH---cCCEEEEEeCCH-HHHHHHHHHHH-HhcCCceEEEEEccCCCHHHHHHH
Confidence 4789999983 589999999964 466677766422 11111111110 012234577899999999887765
No 458
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.58 E-value=1.6e+02 Score=32.71 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=31.4
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
+|.|+|.|..|..+...|...++ +|.+. +++++..+.+..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~-------------~V~~~-~r~~~~~~~i~~ 45 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGV-------------PVRLW-ARRPEFAAALAA 45 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCC-------------eEEEE-eCCHHHHHHHHH
Confidence 68999999999999999988655 46654 777776666654
No 459
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.49 E-value=4.4e+02 Score=25.44 Aligned_cols=83 Identities=12% Similarity=-0.006 Sum_probs=48.0
Q ss_pred CCceEEEecCCCCCHHHHHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEE-cCcccHHHHHhc
Q 003003 356 NHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEV-SNPNTCELLKSL 434 (858)
Q Consensus 356 ~~~~Vv~~~Gd~~~~e~L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev-~d~~~~~~l~~a 434 (858)
.|.+|+..-++-+.++..+.|--++|+.|.+.+...+ +......+...|.-+.. .++++++-= .-++..+.++.+
T Consensus 29 ~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~-~~~~~~~~~~~L~~~g~---~~i~vivGG~~~~~~~~~l~~~ 104 (132)
T TIGR00640 29 LGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGG-HLTLVPALRKELDKLGR---PDILVVVGGVIPPQDFDELKEM 104 (132)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhh-hHHHHHHHHHHHHhcCC---CCCEEEEeCCCChHhHHHHHHC
Confidence 3888887666666667777777788996655433221 11122333333332221 256676641 223345668999
Q ss_pred CCCeEEeh
Q 003003 435 SGLKVEPV 442 (858)
Q Consensus 435 g~d~Vi~~ 442 (858)
|.+.++.+
T Consensus 105 Gvd~~~~~ 112 (132)
T TIGR00640 105 GVAEIFGP 112 (132)
T ss_pred CCCEEECC
Confidence 99999987
No 460
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=24.43 E-value=2.6e+02 Score=30.16 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=18.0
Q ss_pred eEEEEcc-CchHHHHHHHHHhc
Q 003003 296 HIIVCGV-NSHLSFILKQLNKY 316 (858)
Q Consensus 296 HIII~G~-~~~~~~li~eL~~~ 316 (858)
.|.|+|. |+.|..+++.+...
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~ 24 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAA 24 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhC
Confidence 5889998 99999999888753
No 461
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=24.40 E-value=2.8e+02 Score=29.89 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=41.4
Q ss_pred CeEEEEccCc-hHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 295 DHIIVCGVNS-HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 295 ~HIII~G~~~-~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
.-++|.|.+. .|..+++.|.+++. +++ +..+..+.++++..++.. ..+....=|-+|.+.
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-------------~vv-l~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~ 67 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-------------KVV-LAARREERLEALADEIGA----GAALALALDVTDRAA 67 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-------------eEE-EEeccHHHHHHHHHhhcc----CceEEEeeccCCHHH
Confidence 4577889876 89999999998766 444 557888888888776521 224444556666655
No 462
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=24.31 E-value=1.7e+02 Score=30.37 Aligned_cols=67 Identities=10% Similarity=-0.008 Sum_probs=41.3
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
++++|.|.+. .+..+++.|.+ .|..+.++...+.+.......++ .-.+.+++++.+|.++.+.++++
T Consensus 3 k~ilItGas~giG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 70 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAA---RGWSVGINYARDAAAAEETADAV---RAAGGRACVVAGDVANEADVIAM 70 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHHHHH---HhcCCcEEEEEeccCCHHHHHHH
Confidence 5789999875 68889999964 46666655332222111111111 01123577899999999888765
No 463
>PRK06988 putative formyltransferase; Provisional
Probab=24.25 E-value=3e+02 Score=30.66 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=20.2
Q ss_pred eEEEEccCchHHHHHHHHHhcCc
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~ 318 (858)
.|+++|.+..+...+++|...+.
T Consensus 4 kIvf~Gs~~~a~~~L~~L~~~~~ 26 (312)
T PRK06988 4 RAVVFAYHNVGVRCLQVLLARGV 26 (312)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCC
Confidence 58999999999999999987544
No 464
>PRK03612 spermidine synthase; Provisional
Probab=24.21 E-value=4.7e+02 Score=31.36 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcc------cCCCCcCCceEEEEECCCCCHHHHHh
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNA------IGHGKLKNVQVFHKIGNPLNFETLKD 668 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~------~~~~~l~~~~V~~i~GD~td~~~L~e 668 (858)
++++||++|.|.- .+++++.++ ++..+++.+|- +++..+...+ .....+.+.+++.++||+.+ .+++
T Consensus 297 ~~~rVL~IG~G~G--~~~~~ll~~-~~v~~v~~VEi--d~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~l~~ 369 (521)
T PRK03612 297 RPRRVLVLGGGDG--LALREVLKY-PDVEQVTLVDL--DPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--WLRK 369 (521)
T ss_pred CCCeEEEEcCCcc--HHHHHHHhC-CCcCeEEEEEC--CHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--HHHh
Confidence 4689999999954 355555544 23368999986 3333332222 11112345567889999864 3544
No 465
>PRK05866 short chain dehydrogenase; Provisional
Probab=24.10 E-value=1.9e+02 Score=31.55 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=43.2
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhc-ccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASN-AIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~-~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+ ..|..++++|.+ .|..|.++... .++.+.+. ++. . .+.++.++.+|.+|.+.++++
T Consensus 40 ~k~vlItGasggIG~~la~~La~---~G~~Vi~~~R~--~~~l~~~~~~l~--~-~~~~~~~~~~Dl~d~~~v~~~ 107 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFAR---RGATVVAVARR--EDLLDAVADRIT--R-AGGDAMAVPCDLSDLDAVDAL 107 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHHHHH--h-cCCcEEEEEccCCCHHHHHHH
Confidence 3679999985 578899999964 47778887753 22211111 110 0 133567899999999988765
No 466
>PRK00536 speE spermidine synthase; Provisional
Probab=24.08 E-value=83 Score=34.24 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=25.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcC
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSD 630 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~ 630 (858)
.+++|||+|+|.- ..++|+.++. .+|++++-
T Consensus 72 ~pk~VLIiGGGDG--g~~REvLkh~---~~v~mVeI 102 (262)
T PRK00536 72 ELKEVLIVDGFDL--ELAHQLFKYD---THVDFVQA 102 (262)
T ss_pred CCCeEEEEcCCch--HHHHHHHCcC---CeeEEEEC
Confidence 5799999999987 4678887773 38999985
No 467
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=24.07 E-value=1.4e+02 Score=24.31 Aligned_cols=49 Identities=16% Similarity=0.400 Sum_probs=32.8
Q ss_pred CCCCCCCCHHHHHccCCc-eEEEEEEE-------CCEE-EECCCCCceecCCCEEEEE
Q 003003 479 FPNLAGIKYRQLRRGFQE-AVVCGLYR-------NGKI-YFHPNDDETLQPTDKILFI 527 (858)
Q Consensus 479 ~p~l~G~tf~el~~~~~~-aivIGI~r-------~G~~-~lnP~~d~~L~~GD~LivI 527 (858)
.|.+.|+++.|+...+.. ..-+.+.+ .|.+ .-+|.+.+.+..|+.+.+.
T Consensus 3 vPd~~g~~~~~a~~~l~~~g~~~~~~~~~~~~~~~g~V~~Q~P~~G~~v~~~~~I~l~ 60 (63)
T PF03793_consen 3 VPDLVGMTYDEAKSILEAAGLTVNVVEEYSDSVPKGTVISQSPAPGTKVKKGSKITLT 60 (63)
T ss_dssp E-TTTTSBHHHHHHHHHHTT-EEEEEEEEESSSSTTSEEEESSCTTSEEETTSEEEEE
T ss_pred CCCcCCCcHHHHHHHHHHCCCEEEEEEEecCCCCCCEEEEEECCCCCCcCCCCEEEEE
Confidence 488999999998765541 12233322 3543 3689999999999988764
No 468
>PRK08226 short chain dehydrogenase; Provisional
Probab=24.07 E-value=1.6e+02 Score=30.91 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=43.9
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+. .+..+++.|.+ .|..|++++... +..+...+. .-.+.++.++.+|.++++.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~---~G~~Vv~~~r~~--~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFAR---HGANLILLDISP--EIEKLADEL---CGRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---CCCEEEEecCCH--HHHHHHHHH---HHhCCceEEEECCCCCHHHHHHH
Confidence 47889999775 68899999964 477888887532 211111111 01234567899999999988775
No 469
>PLN02366 spermidine synthase
Probab=24.03 E-value=1.5e+02 Score=33.01 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=38.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCc-hhhhh-hhcccCCCCcCCceEEEEECCCCCH
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPL-DDRKR-ASNAIGHGKLKNVQVFHKIGNPLNF 663 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~-~er~~-~l~~~~~~~l~~~~V~~i~GD~td~ 663 (858)
.+++||++|.|.-+ +++++.++ ++..+|++++-.+. -+.++ .+.... ..+.+.++..+.||+...
T Consensus 91 ~pkrVLiIGgG~G~--~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~-~~~~dpRv~vi~~Da~~~ 157 (308)
T PLN02366 91 NPKKVLVVGGGDGG--VLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLA-VGFDDPRVNLHIGDGVEF 157 (308)
T ss_pred CCCeEEEEcCCccH--HHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhc-cccCCCceEEEEChHHHH
Confidence 46899999999754 56677655 33457888885221 01111 121111 124566788899998653
No 470
>PRK12746 short chain dehydrogenase; Provisional
Probab=23.94 E-value=1.9e+02 Score=30.22 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=42.3
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+. .+..+++.|.+ .|..+.++.....+...+...++ .-.+..++++++|.+|.+.+.++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~---~G~~v~i~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~d~~~i~~~ 74 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLAN---DGALVAIHYGRNKQAADETIREI---ESNGGKAFLIEADLNSIDGVKKL 74 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCCHHHHHHHHHHH---HhcCCcEEEEEcCcCCHHHHHHH
Confidence 36899999764 68899999964 46667664322222111111111 11134577899999999998775
No 471
>PRK07890 short chain dehydrogenase; Provisional
Probab=23.92 E-value=1.5e+02 Score=31.06 Aligned_cols=67 Identities=4% Similarity=-0.021 Sum_probs=43.8
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+ ..+..+++.|.+ .|..|.+++..+ ++-.+...+. .-...+++++..|.+|.+.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~---~G~~V~~~~r~~-~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~ 72 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAAR---AGADVVLAARTA-ERLDEVAAEI---DDLGRRALAVPTDITDEDQCANL 72 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---cCCEEEEEeCCH-HHHHHHHHHH---HHhCCceEEEecCCCCHHHHHHH
Confidence 4679999986 478899999964 577888877532 1111111111 01134578899999999988765
No 472
>PLN02477 glutamate dehydrogenase
Probab=23.90 E-value=2.6e+02 Score=32.50 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=22.1
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
+.-+++|.|+|.+|..+++.|.+.+.
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~Ga 230 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEKGG 230 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 45689999999999999999987544
No 473
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=23.90 E-value=1.7e+02 Score=32.52 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=43.4
Q ss_pred CcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCc---hhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPL---DDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~---~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+++||.|. |-.|..+++.|.+ .|.+|+.++..+. .++.+.+.+. .....+..++++.||-+|.+.+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLE---KGYEVHGLIRRSSSFNTQRIEHIYED-PHNVNKARMKLHYGDLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHH---CCCEEEEEecCCcccchhhhhhhhhc-cccccccceeEEEeccCCHHHHHHH
Confidence 36899998 5689999999964 4778888765322 1121111100 0001123577899999999998876
No 474
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=23.88 E-value=3.8e+02 Score=31.05 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=32.1
Q ss_pred CeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHH
Q 003003 295 DHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (858)
Q Consensus 295 ~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~ 348 (858)
.+|-|+|.|..|..++..|.+.++ .|++. |.+++.++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-------------~V~~~-D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-------------QVIGV-DINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-------------EEEEE-eCCHHHHHHHH
Confidence 468999999999999999998765 45544 88888887754
No 475
>PRK09242 tropinone reductase; Provisional
Probab=23.76 E-value=1.5e+02 Score=31.07 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=44.4
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.+ ..+..+++.|.+ .|..|.++... .+..++..+++. ...++.++.++.+|.++.+.++++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~---~G~~v~~~~r~-~~~~~~~~~~l~-~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLG---LGADVLIVARD-ADALAQARDELA-EEFPEREVHGLAADVSDDEDRRAI 78 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCC-HHHHHHHHHHHH-hhCCCCeEEEEECCCCCHHHHHHH
Confidence 3678888875 578899999964 57778887753 222222211110 012345788899999999887765
No 476
>PRK06101 short chain dehydrogenase; Provisional
Probab=23.69 E-value=1.8e+02 Score=30.34 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=42.6
Q ss_pred CcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.++|.|.+. .+..++++|.+ .|..|.++... +++.+.+.. .. .+++++.+|.+|++.++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~---~G~~V~~~~r~--~~~~~~~~~----~~--~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK---QGWQVIACGRN--QSVLDELHT----QS--ANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh---CCCEEEEEECC--HHHHHHHHH----hc--CCCeEEEeeCCCHHHHHHH
Confidence 4688998765 68899999964 57788887752 233222221 11 2366789999999999886
No 477
>PRK12939 short chain dehydrogenase; Provisional
Probab=23.63 E-value=1.7e+02 Score=30.23 Aligned_cols=67 Identities=9% Similarity=0.103 Sum_probs=43.2
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|.+ ..+..+++.|.+ .|..+.++... .++..+...++ .-.+.++..+.+|.++.+.++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~---~G~~v~~~~r~-~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAE---AGATVAFNDGL-AAEARELAAAL---EAAGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---cCCEEEEEeCC-HHHHHHHHHHH---HhcCCcEEEEEccCCCHHHHHHH
Confidence 4788999974 678999999964 46778777642 22222221211 01123567799999999988765
No 478
>PRK06841 short chain dehydrogenase; Provisional
Probab=23.55 E-value=1.8e+02 Score=30.43 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=42.9
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+++||.|.+ ..+..+++.|.+ .|..|.++...+ +..+... ......+..+..|.++.+.++++
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~---~G~~Vi~~~r~~--~~~~~~~-----~~~~~~~~~~~~Dl~~~~~~~~~ 79 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAA---KGARVALLDRSE--DVAEVAA-----QLLGGNAKGLVCDVSDSQSVEAA 79 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHH-----HhhCCceEEEEecCCCHHHHHHH
Confidence 4689999974 578899999964 477787776532 2221111 12233456799999999988775
No 479
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=23.52 E-value=1.7e+02 Score=24.54 Aligned_cols=45 Identities=24% Similarity=0.246 Sum_probs=31.2
Q ss_pred CCCCHHHHHccCC-ceEEEEEEECCEEEECC---CCCceecCCCEEEEEee
Q 003003 483 AGIKYRQLRRGFQ-EAVVCGLYRNGKIYFHP---NDDETLQPTDKILFIAP 529 (858)
Q Consensus 483 ~G~tf~el~~~~~-~aivIGI~r~G~~~lnP---~~d~~L~~GD~LivIa~ 529 (858)
.|.|+.|+...+. ..--+++..|+++ .| -.++.|++||++-++..
T Consensus 14 ~~~tl~~ll~~l~~~~~~vaVavN~~i--v~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 14 AGQTVHELLEQLNQLQPGAALAINQQI--IPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCCCHHHHHHHcCCCCCcEEEEECCEE--eChHHcCccccCCCCEEEEEEE
Confidence 3678888766543 2233667779995 36 35678999999988764
No 480
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=23.50 E-value=2e+02 Score=30.84 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=43.9
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCC--ChHHHHHHHHhhccccCCceEEEecCCCCCHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDL--PRKQMDKLAENIAKDLNHIDILSKSCSLTLTK 371 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~--~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e 371 (858)
++-+++-|.+-.|..+.++|.+.+.. ..+++ ++ +++.+.++.+.+ +...|+|...|.++..
T Consensus 6 Kna~vtggagGIGl~~sk~Ll~kgik------------~~~i~-~~~En~~a~akL~ai~----p~~~v~F~~~DVt~~~ 68 (261)
T KOG4169|consen 6 KNALVTGGAGGIGLATSKALLEKGIK------------VLVID-DSEENPEAIAKLQAIN----PSVSVIFIKCDVTNRG 68 (261)
T ss_pred ceEEEecCCchhhHHHHHHHHHcCch------------heeeh-hhhhCHHHHHHHhccC----CCceEEEEEeccccHH
Confidence 44455557788999999999987651 33333 32 455555554422 2467899999998888
Q ss_pred HHHhc
Q 003003 372 SYERA 376 (858)
Q Consensus 372 ~L~rA 376 (858)
+++++
T Consensus 69 ~~~~~ 73 (261)
T KOG4169|consen 69 DLEAA 73 (261)
T ss_pred HHHHH
Confidence 77765
No 481
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.48 E-value=2.5e+02 Score=30.90 Aligned_cols=39 Identities=10% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDK 346 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~ 346 (858)
..++.|+|+|..|..+++.|...+. +|++. +++++..+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~-------------~V~v~-~R~~~~~~~ 189 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGA-------------RVFVG-ARSSADLAR 189 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCC-------------EEEEE-eCCHHHHHH
Confidence 5589999999999999999987543 56654 666655444
No 482
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=23.42 E-value=8.4e+02 Score=26.68 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=30.2
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLA 348 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~ 348 (858)
.|-++|.|..|..+++.|.+.+. .|++ .|++++..+.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-------------~v~v-~dr~~~~~~~~~ 40 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-------------EVVG-YDVNQEAVDVAG 40 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-------------EEEE-EECCHHHHHHHH
Confidence 37789999999999999987654 4555 488877777654
No 483
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.37 E-value=2e+02 Score=30.08 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=43.8
Q ss_pred CCcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.+||.|.+ ..+..+++.|.+ .|..|.++...+. ...+...++. . .+.++.++.+|.++.+.++++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~---~G~~v~~~~r~~~-~~~~~~~~~~--~-~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELAR---AGAAVAIADLNQD-GANAVADEIN--K-AGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCeEEEEeCChH-HHHHHHHHHH--h-cCceEEEEECCCCCHHHHHHH
Confidence 3679999985 578899999964 4677887765331 1111111110 1 134577899999999998875
No 484
>PRK06940 short chain dehydrogenase; Provisional
Probab=23.36 E-value=1.6e+02 Score=31.62 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=43.4
Q ss_pred CCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
++.++|-|.+..+..+++.|. .|..|.++... .+...+...++ +-.+.+++++.+|.+|.+.++++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~----~G~~Vv~~~r~-~~~~~~~~~~l---~~~~~~~~~~~~Dv~d~~~i~~~ 67 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG----AGKKVLLADYN-EENLEAAAKTL---REAGFDVSTQEVDVSSRESVKAL 67 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh----CCCEEEEEeCC-HHHHHHHHHHH---HhcCCeEEEEEeecCCHHHHHHH
Confidence 357788888888889999983 37788887752 22212221211 11134677899999999988876
No 485
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=23.31 E-value=5.6e+02 Score=30.43 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=22.7
Q ss_pred cCCCeEEEEccCchHHHHHHHHHhcCc
Q 003003 292 LESDHIIVCGVNSHLSFILKQLNKYHE 318 (858)
Q Consensus 292 ~~~~HIII~G~~~~~~~li~eL~~~~~ 318 (858)
.....++|+|+|..|..+++.+...+.
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga 278 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGA 278 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 456789999999999999999987544
No 486
>PRK06483 dihydromonapterin reductase; Provisional
Probab=23.30 E-value=1.3e+02 Score=31.17 Aligned_cols=62 Identities=6% Similarity=-0.109 Sum_probs=41.9
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+++||.|.++ .+..+++.|.+ .|..|.++...+.+. .+.+. ...++++.+|.++.+.+++.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~~~~~-~~~~~--------~~~~~~~~~D~~~~~~~~~~ 64 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLA---QGQPVIVSYRTHYPA-IDGLR--------QAGAQCIQADFSTNAGIMAF 64 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHH---CCCeEEEEeCCchhH-HHHHH--------HcCCEEEEcCCCCHHHHHHH
Confidence 36789999865 68899999964 577788877533221 11111 11256789999999988775
No 487
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=23.29 E-value=1.8e+02 Score=30.09 Aligned_cols=67 Identities=10% Similarity=-0.025 Sum_probs=41.2
Q ss_pred CcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.+||.|.+ ..+..+++.|.+ .|..|.++.....+...+...+. .-.+..++++++|-+|.+.++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~d~~~i~~~ 69 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQ---EGYTVAVNYQQNLHAAQEVVNLI---TQAGGKAFVLQADISDENQVVAM 69 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCChHHHHHHHHHH---HhCCCeEEEEEccCCCHHHHHHH
Confidence 358999986 478899999964 46667654322122112221211 01133577799999999988876
No 488
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=23.27 E-value=2.7e+02 Score=29.53 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=28.6
Q ss_pred CeEEEEccC-chHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 295 DHIIVCGVN-SHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 295 ~HIII~G~~-~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
|-|+|.|.+ -.|..+++++.+.+. =||++-++++.+++..+
T Consensus 6 nTiLITGG~sGIGl~lak~f~elgN--------------~VIi~gR~e~~L~e~~~ 47 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELGN--------------TVIICGRNEERLAEAKA 47 (245)
T ss_pred cEEEEeCCcchhhHHHHHHHHHhCC--------------EEEEecCcHHHHHHHHh
Confidence 345555554 488999999988533 25667888888887655
No 489
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=23.24 E-value=1.2e+02 Score=32.64 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=39.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhccc---CCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 595 PKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAI---GHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 595 ~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~---~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+++|||+|.|.- .+++++.++ .+..+|++++- +++..+..... ....+.+.+++.+.+|+.. -|++.
T Consensus 76 ~p~~VLiiGgG~G--~~~~ell~~-~~~~~i~~VEi--D~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--~l~~~ 146 (246)
T PF01564_consen 76 NPKRVLIIGGGDG--GTARELLKH-PPVESITVVEI--DPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--FLKET 146 (246)
T ss_dssp ST-EEEEEESTTS--HHHHHHTTS-TT-SEEEEEES---HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--HHHTS
T ss_pred CcCceEEEcCCCh--hhhhhhhhc-CCcceEEEEec--ChHHHHHHHHhchhhccccCCCceEEEEhhhHH--HHHhc
Confidence 4799999999865 457777665 24567999986 22222221111 0112456677779999864 45554
No 490
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.17 E-value=2.3e+02 Score=30.95 Aligned_cols=68 Identities=9% Similarity=-0.008 Sum_probs=43.6
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.+||.|.++ .+..++++|.+ .|..|++....+.+...+...++ .-.+.++.++.+|.+|.+.+++.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~---~Ga~Vv~~~~~~~~~~~~~~~~i---~~~g~~~~~~~~Dv~d~~~~~~~ 80 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLAR---LGATVVVNDVASALDASDVLDEI---RAAGAKAVAVAGDISQRATADEL 80 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEecCCchhHHHHHHHHH---HhcCCeEEEEeCCCCCHHHHHHH
Confidence 46789999875 68899999964 46677776532222212222211 11234678899999999888875
No 491
>PRK07023 short chain dehydrogenase; Provisional
Probab=23.09 E-value=2.1e+02 Score=29.72 Aligned_cols=60 Identities=8% Similarity=-0.028 Sum_probs=41.1
Q ss_pred cEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 598 RILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 598 ~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
++||.|.+ ..+..++++|.+ .|..+.++...+..+. . ...+.++.++.+|.++.+.++++
T Consensus 3 ~vlItGasggiG~~ia~~l~~---~G~~v~~~~r~~~~~~---~------~~~~~~~~~~~~D~~~~~~~~~~ 63 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQ---PGIAVLGVARSRHPSL---A------AAAGERLAEVELDLSDAAAAAAW 63 (243)
T ss_pred eEEEecCCcchHHHHHHHHHh---CCCEEEEEecCcchhh---h------hccCCeEEEEEeccCCHHHHHHH
Confidence 68999985 478899999964 4777777764322111 0 11234577899999999988874
No 492
>PRK09134 short chain dehydrogenase; Provisional
Probab=22.96 E-value=2.2e+02 Score=29.98 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=42.3
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.+||.|.+. .+..+++.|.+ .|..+.++...+.+........+ ...+..++++.+|.+|.+.++++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~---~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~ 77 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAA---HGFDVAVHYNRSRDEAEALAAEI---RALGRRAVALQADLADEAEVRAL 77 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHHHHH---HhcCCeEEEEEcCCCCHHHHHHH
Confidence 46789998875 68889999964 46667665432221111111111 01134577899999999988875
No 493
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=22.93 E-value=1.6e+02 Score=33.86 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=29.9
Q ss_pred CCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 294 ~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
..-|||+|.|-.|..++..|.+.+. +|-|+ |+|-.+=+.+.-
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGR-------------rVhVI-ERDl~EPdRivG 86 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGR-------------RVHVI-ERDLSEPDRIVG 86 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCc-------------EEEEE-ecccccchHHHH
Confidence 3459999999999999999987543 56655 776544444443
No 494
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=22.88 E-value=2e+02 Score=31.35 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=30.3
Q ss_pred EEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 297 III~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
|-|+|.|..|..+++.|...++ .|++ .+++++..+.+.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~-------------~V~~-~dr~~~~~~~~~~ 40 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGY-------------QLHV-TTIGPEVADELLA 40 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCC-------------eEEE-EcCCHHHHHHHHH
Confidence 6789999999999999998654 4554 4888777776543
No 495
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=22.71 E-value=3.8e+02 Score=30.25 Aligned_cols=43 Identities=9% Similarity=0.076 Sum_probs=29.6
Q ss_pred EEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhh
Q 003003 297 IIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENI 351 (858)
Q Consensus 297 III~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~ 351 (858)
|-|.|+|+.|..+++.+..... -.+|-++|.+++....+...+
T Consensus 1 VaInG~GrIGr~varav~~~~d------------~elVaVnD~~~~~~a~lA~~l 43 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDD------------MKLVGVTKTSPDFEAYRAKEL 43 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCC------------cEEEEEecCChHHHHHHHHHh
Confidence 3589999999999999875322 267777787666544554433
No 496
>PRK06181 short chain dehydrogenase; Provisional
Probab=22.56 E-value=1.8e+02 Score=30.65 Aligned_cols=66 Identities=6% Similarity=-0.021 Sum_probs=42.6
Q ss_pred CcEEEEecc-ccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 597 ERILLLGWR-PDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 597 ~~vLI~Gw~-~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
+.+||.|.+ ..+..+++.|. ..|..|+++...+. +..+...++ +-.+..++++.+|.+|.+.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~---~~g~~Vi~~~r~~~-~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~~~~~ 68 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLA---RAGAQLVLAARNET-RLASLAQEL---ADHGGEALVVPTDVSDAEACERL 68 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHH---HCCCEEEEEeCCHH-HHHHHHHHH---HhcCCcEEEEEccCCCHHHHHHH
Confidence 468999985 57889999986 34677888775322 111111111 01133577899999999988775
No 497
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=22.55 E-value=1.8e+02 Score=29.52 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=29.8
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHH
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAE 349 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~ 349 (858)
+|-|+|.|..|..++..+..++. .|++. |.+++.++...+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-------------~V~l~-d~~~~~l~~~~~ 40 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-------------EVTLY-DRSPEALERARK 40 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-------------EEEEE--SSHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-------------cEEEE-ECChHHHHhhhh
Confidence 57899999999999999998765 56654 888877766543
No 498
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=22.53 E-value=6.1e+02 Score=31.21 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=43.5
Q ss_pred CCcEEEEec-cccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGW-RPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw-~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++|||.|. |-.+..+++.|.+. .++..|..++..+..+....+.. ......+.++.||.+|.+.+.++
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~-g~~~~V~~~d~~~~~~~~~~l~~----~~~~~~v~~~~~Dl~d~~~~~~~ 75 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRN-YPDYKIVVLDKLDYCSNLKNLNP----SKSSPNFKFVKGDIASADLVNYL 75 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHh-CCCCEEEEEeCCCccchhhhhhh----cccCCCeEEEECCCCChHHHHHH
Confidence 578999997 66899999999754 24667777764221111111110 01123577899999999887764
No 499
>PRK08264 short chain dehydrogenase; Validated
Probab=22.48 E-value=1.8e+02 Score=30.02 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=41.6
Q ss_pred CCcEEEEec-cccHHHHHHHHhcccCCCc-eEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGW-RPDVVEMIEEYDNYLGPGS-VLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw-~~~~~~li~eL~~~~~~gs-~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.++++|.|. |..+..+++.|.+ .|. .|.++...+ ++.+ . ....++++.+|.++.+.++++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~---~G~~~V~~~~r~~--~~~~--------~-~~~~~~~~~~D~~~~~~~~~~ 67 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLA---RGAAKVYAAARDP--ESVT--------D-LGPRVVPLQLDVTDPASVAAA 67 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCcccEEEEecCh--hhhh--------h-cCCceEEEEecCCCHHHHHHH
Confidence 478999997 4578999999964 465 677766422 2111 0 123567799999999998876
No 500
>PRK07062 short chain dehydrogenase; Provisional
Probab=22.31 E-value=1.8e+02 Score=30.76 Aligned_cols=69 Identities=10% Similarity=0.047 Sum_probs=44.3
Q ss_pred CCcEEEEeccc-cHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhc
Q 003003 596 KERILLLGWRP-DVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDT 669 (858)
Q Consensus 596 ~~~vLI~Gw~~-~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea 669 (858)
.+.++|.|.++ .+..++++|.+ .|..|.++...+. ...+...++ ....++.+++.+..|.+|.+.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~---~G~~V~~~~r~~~-~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLE---AGASVAICGRDEE-RLASAEARL-REKFPGARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCHH-HHHHHHHHH-HhhCCCceEEEEEecCCCHHHHHHH
Confidence 46889999875 68899999964 4777877765321 111111111 0122345678899999999988775
Done!