Query 003004
Match_columns 858
No_of_seqs 370 out of 1905
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 15:07:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 8E-177 2E-181 1537.9 73.7 845 1-858 1-852 (894)
2 PLN02361 alpha-amylase 100.0 8.2E-64 1.8E-68 561.2 35.6 346 507-857 10-361 (401)
3 PLN00196 alpha-amylase; Provis 100.0 2.1E-63 4.5E-68 563.9 34.5 351 507-858 23-386 (428)
4 PRK10785 maltodextrin glucosid 100.0 4.7E-64 1E-68 594.0 29.7 424 393-857 47-539 (598)
5 PRK09505 malS alpha-amylase; R 100.0 9.6E-57 2.1E-61 531.8 28.6 342 470-855 190-661 (683)
6 PRK09441 cytoplasmic alpha-amy 100.0 6.7E-55 1.5E-59 505.3 32.6 328 508-857 3-407 (479)
7 TIGR02456 treS_nterm trehalose 100.0 2.8E-52 6.1E-57 489.5 28.7 315 523-855 24-466 (539)
8 TIGR02403 trehalose_treC alpha 100.0 1.7E-51 3.8E-56 482.4 26.4 317 523-856 23-478 (543)
9 PRK10933 trehalose-6-phosphate 100.0 3.2E-51 7E-56 479.8 27.6 309 523-854 29-482 (551)
10 PF00128 Alpha-amylase: Alpha 100.0 1.4E-48 3.1E-53 423.0 14.3 284 524-825 1-309 (316)
11 TIGR02402 trehalose_TreZ malto 100.0 1.4E-46 3.1E-51 439.8 29.1 318 502-854 91-510 (542)
12 TIGR02100 glgX_debranch glycog 100.0 7E-47 1.5E-51 451.1 26.8 318 501-850 152-578 (688)
13 PRK14510 putative bifunctional 100.0 2.1E-46 4.6E-51 468.8 27.8 445 345-853 9-581 (1221)
14 TIGR02104 pulA_typeI pullulana 100.0 2.1E-46 4.6E-51 444.8 22.5 320 503-850 126-538 (605)
15 PRK12313 glycogen branching en 100.0 3.3E-45 7.3E-50 436.9 31.4 314 503-855 146-533 (633)
16 PRK03705 glycogen debranching 100.0 7.4E-46 1.6E-50 439.4 25.3 322 500-849 146-569 (658)
17 TIGR01515 branching_enzym alph 100.0 1.3E-44 2.7E-49 429.7 25.7 306 504-854 138-519 (613)
18 PRK05402 glycogen branching en 100.0 3E-43 6.6E-48 425.1 30.9 313 503-854 240-628 (726)
19 PRK14706 glycogen branching en 100.0 2.2E-41 4.8E-46 400.6 26.6 312 503-855 143-528 (639)
20 TIGR02102 pullulan_Gpos pullul 100.0 1.9E-41 4.1E-46 415.3 26.8 318 502-849 449-903 (1111)
21 PRK12568 glycogen branching en 100.0 1E-39 2.2E-44 385.9 32.1 317 501-856 243-634 (730)
22 PRK13840 sucrose phosphorylase 100.0 6E-40 1.3E-44 374.6 25.4 312 509-855 4-445 (495)
23 COG0366 AmyA Glycosidases [Car 100.0 1.9E-40 4.1E-45 385.5 17.9 180 470-686 1-205 (505)
24 TIGR03852 sucrose_gtfA sucrose 100.0 8E-40 1.7E-44 371.5 19.8 309 510-855 3-437 (470)
25 PRK14705 glycogen branching en 100.0 8.8E-38 1.9E-42 385.1 30.5 309 503-855 746-1129(1224)
26 PLN02960 alpha-amylase 100.0 2.6E-37 5.7E-42 365.5 29.3 312 503-854 394-800 (897)
27 KOG0471 Alpha-amylase [Carbohy 100.0 1.6E-36 3.4E-41 354.6 21.8 326 524-856 37-482 (545)
28 TIGR02103 pullul_strch alpha-1 100.0 1.9E-36 4.1E-41 365.2 20.6 195 501-708 249-529 (898)
29 PLN02447 1,4-alpha-glucan-bran 100.0 3.4E-34 7.4E-39 339.7 30.1 310 503-853 228-638 (758)
30 PLN02877 alpha-amylase/limit d 100.0 1.6E-34 3.5E-39 347.5 23.6 194 501-708 336-600 (970)
31 PLN02784 alpha-amylase 100.0 2.7E-35 5.8E-40 346.9 15.7 163 47-216 229-394 (894)
32 COG1523 PulA Type II secretory 100.0 1.4E-34 3.1E-39 340.3 15.7 322 497-849 164-596 (697)
33 TIGR02455 TreS_stutzeri trehal 100.0 9.4E-33 2E-37 316.4 23.8 307 530-856 77-607 (688)
34 COG0296 GlgB 1,4-alpha-glucan 100.0 7.4E-32 1.6E-36 312.8 28.2 285 502-824 142-470 (628)
35 TIGR02401 trehalose_TreY malto 100.0 2.5E-32 5.4E-37 325.1 23.2 186 523-708 12-287 (825)
36 KOG0470 1,4-alpha-glucan branc 100.0 2.1E-28 4.5E-33 281.2 15.8 171 500-686 225-409 (757)
37 PRK14511 maltooligosyl trehalo 99.9 5.1E-26 1.1E-30 272.3 27.1 81 523-603 16-98 (879)
38 PLN03244 alpha-amylase; Provis 99.9 3E-24 6.6E-29 250.5 23.9 282 504-851 400-772 (872)
39 smart00642 Aamy Alpha-amylase 99.9 2E-24 4.3E-29 216.7 10.8 92 510-601 2-97 (166)
40 KOG2212 Alpha-amylase [Carbohy 99.9 1.4E-21 3.1E-26 206.7 18.5 281 507-821 27-357 (504)
41 PRK14507 putative bifunctional 99.8 3.9E-18 8.4E-23 215.9 18.4 79 523-601 754-834 (1693)
42 COG3280 TreY Maltooligosyl tre 99.7 7.1E-16 1.5E-20 177.6 15.2 78 525-602 17-96 (889)
43 TIGR01531 glyc_debranch glycog 99.5 6.2E-14 1.3E-18 173.2 9.3 80 524-603 129-214 (1464)
44 PF14872 GHL5: Hypothetical gl 98.8 1.4E-07 2.9E-12 108.7 17.3 146 505-684 179-393 (811)
45 PF14701 hDGE_amylase: glucano 98.5 2.6E-07 5.6E-12 104.6 8.6 81 524-604 19-107 (423)
46 PF02324 Glyco_hydro_70: Glyco 98.4 4E-06 8.7E-11 97.7 14.2 184 642-843 139-400 (809)
47 PF02638 DUF187: Glycosyl hydr 98.0 3.1E-05 6.7E-10 85.9 12.0 138 525-679 17-161 (311)
48 PF14871 GHL6: Hypothetical gl 97.9 8.6E-05 1.9E-09 72.1 11.3 128 530-680 3-132 (132)
49 PF02324 Glyco_hydro_70: Glyco 97.7 4.9E-05 1.1E-09 88.9 6.4 76 526-601 586-674 (809)
50 COG1649 Uncharacterized protei 97.3 0.0011 2.4E-08 75.4 9.8 140 525-681 62-208 (418)
51 PRK14508 4-alpha-glucanotransf 97.1 0.035 7.6E-07 65.5 21.1 44 524-567 23-68 (497)
52 KOG3625 Alpha amylase [Carbohy 96.6 0.0022 4.8E-08 76.9 5.0 78 526-603 141-226 (1521)
53 cd06592 GH31_glucosidase_KIAA1 96.4 0.029 6.2E-07 62.2 12.1 131 525-683 28-166 (303)
54 cd06597 GH31_transferase_CtsY 96.3 0.021 4.6E-07 64.3 10.7 149 525-684 22-189 (340)
55 cd06593 GH31_xylosidase_YicI Y 96.3 0.025 5.5E-07 62.6 11.0 133 525-684 22-161 (308)
56 PF02065 Melibiase: Melibiase; 96.2 0.04 8.6E-07 63.2 12.2 133 526-682 57-193 (394)
57 PLN02635 disproportionating en 95.5 0.13 2.8E-06 61.2 12.8 24 574-597 224-247 (538)
58 PLN02316 synthase/transferase 95.3 0.51 1.1E-05 60.0 17.9 225 121-400 345-581 (1036)
59 PF03423 CBM_25: Carbohydrate 95.3 0.057 1.2E-06 48.7 7.1 66 124-213 21-86 (87)
60 PF13200 DUF4015: Putative gly 95.1 0.43 9.2E-06 53.2 14.6 131 524-682 10-147 (316)
61 PLN02316 synthase/transferase 94.9 0.42 9.2E-06 60.8 15.5 96 96-217 140-241 (1036)
62 cd06599 GH31_glycosidase_Aec37 94.9 0.23 5.1E-06 55.4 12.0 134 527-682 29-168 (317)
63 PF13199 Glyco_hydro_66: Glyco 94.8 0.13 2.7E-06 61.5 9.8 145 525-682 116-268 (559)
64 cd06594 GH31_glucosidase_YihQ 94.0 0.085 1.8E-06 58.9 6.0 140 525-683 21-167 (317)
65 cd06591 GH31_xylosidase_XylS X 93.6 0.11 2.4E-06 57.9 5.9 133 525-683 22-160 (319)
66 cd06600 GH31_MGAM-like This fa 93.3 0.14 2.9E-06 57.3 6.0 133 525-682 22-160 (317)
67 PF00150 Cellulase: Cellulase 92.8 0.19 4.1E-06 54.0 6.1 77 508-596 6-84 (281)
68 PF14488 DUF4434: Domain of un 92.8 0.5 1.1E-05 47.8 8.8 68 528-597 21-88 (166)
69 PRK14510 putative bifunctional 92.7 1.3 2.7E-05 58.1 14.1 44 508-551 725-770 (1221)
70 cd06602 GH31_MGAM_SI_GAA This 92.5 0.31 6.7E-06 55.0 7.5 135 526-682 23-165 (339)
71 PF02446 Glyco_hydro_77: 4-alp 92.4 0.33 7.1E-06 57.6 7.8 177 574-798 192-397 (496)
72 PF07745 Glyco_hydro_53: Glyco 92.2 0.44 9.5E-06 53.5 8.1 55 530-597 27-81 (332)
73 PRK11052 malQ 4-alpha-glucanot 92.1 1.2 2.6E-05 54.9 12.2 24 574-597 355-380 (695)
74 TIGR00217 malQ 4-alpha-glucano 91.3 1.4 3E-05 52.4 11.4 24 574-597 212-235 (513)
75 PRK14582 pgaB outer membrane N 90.4 1.8 3.9E-05 52.9 11.4 127 526-679 333-465 (671)
76 PRK10426 alpha-glucosidase; Pr 90.2 0.7 1.5E-05 56.4 7.8 132 527-682 221-363 (635)
77 cd06604 GH31_glucosidase_II_Ma 90.2 0.44 9.5E-06 53.7 5.7 131 526-682 23-159 (339)
78 PF01055 Glyco_hydro_31: Glyco 89.9 0.54 1.2E-05 54.7 6.3 136 525-682 41-180 (441)
79 COG3589 Uncharacterized conser 89.4 0.68 1.5E-05 51.3 6.0 57 526-596 15-71 (360)
80 COG1640 MalQ 4-alpha-glucanotr 89.0 7.2 0.00016 46.3 14.4 24 574-597 210-233 (520)
81 cd06598 GH31_transferase_CtsZ 88.7 1 2.2E-05 50.4 7.0 135 526-682 23-164 (317)
82 PRK10658 putative alpha-glucos 88.4 0.94 2E-05 55.6 7.1 127 527-682 283-418 (665)
83 cd06595 GH31_xylosidase_XylS-l 88.3 0.78 1.7E-05 50.6 5.8 132 525-682 23-159 (292)
84 COG1501 Alpha-glucosidases, fa 86.6 1.4 3.1E-05 54.8 7.2 86 576-682 323-415 (772)
85 PF10566 Glyco_hydro_97: Glyco 86.5 4.4 9.5E-05 44.3 10.1 66 523-594 28-93 (273)
86 PF05913 DUF871: Bacterial pro 86.3 0.7 1.5E-05 52.4 4.0 59 525-597 12-70 (357)
87 TIGR01531 glyc_debranch glycog 86.1 3.7 8E-05 53.6 10.5 54 652-708 487-545 (1464)
88 cd06589 GH31 The enzymes of gl 85.6 5.4 0.00012 43.3 10.4 62 524-594 21-86 (265)
89 cd06542 GH18_EndoS-like Endo-b 85.2 2.5 5.4E-05 45.4 7.5 65 572-681 49-113 (255)
90 PF02449 Glyco_hydro_42: Beta- 85.1 1.9 4.1E-05 49.2 6.8 121 528-682 11-138 (374)
91 PLN02763 hydrolase, hydrolyzin 85.1 1.7 3.7E-05 55.1 6.9 131 526-682 200-336 (978)
92 cd06562 GH20_HexA_HexB-like Be 82.4 8.5 0.00018 43.6 10.5 122 526-669 17-146 (348)
93 cd06601 GH31_lyase_GLase GLase 82.3 3.3 7.1E-05 46.7 7.1 108 526-682 23-133 (332)
94 COG3867 Arabinogalactan endo-1 81.9 4 8.6E-05 44.7 7.1 56 530-594 66-124 (403)
95 cd06603 GH31_GANC_GANAB_alpha 80.3 2.5 5.5E-05 47.6 5.4 134 525-682 22-162 (339)
96 PF03198 Glyco_hydro_72: Gluca 79.3 2.9 6.3E-05 46.3 5.3 56 527-603 53-108 (314)
97 cd02875 GH18_chitobiase Chitob 78.3 3.8 8.1E-05 46.6 6.0 30 652-681 92-121 (358)
98 PRK14507 putative bifunctional 78.0 2.7 5.8E-05 56.2 5.2 67 640-706 1035-1114(1693)
99 COG3280 TreY Maltooligosyl tre 77.7 3.2 6.9E-05 50.5 5.2 54 803-856 709-802 (889)
100 PF03423 CBM_25: Carbohydrate 77.6 3.6 7.8E-05 37.1 4.5 35 363-397 52-86 (87)
101 cd06569 GH20_Sm-chitobiase-lik 74.1 8.3 0.00018 45.2 7.5 76 526-601 21-125 (445)
102 PLN02950 4-alpha-glucanotransf 69.3 12 0.00027 47.6 7.8 54 524-577 280-339 (909)
103 TIGR01370 cysRS possible cyste 69.2 19 0.00042 40.3 8.5 36 648-684 137-172 (315)
104 PF01301 Glyco_hydro_35: Glyco 68.6 4.5 9.8E-05 45.3 3.5 57 530-596 27-85 (319)
105 cd06564 GH20_DspB_LnbB-like Gl 66.9 34 0.00074 38.3 10.1 121 526-672 16-155 (326)
106 KOG1065 Maltase glucoamylase a 66.8 37 0.0008 42.3 10.8 133 524-682 308-448 (805)
107 PRK11052 malQ 4-alpha-glucanot 65.5 15 0.00032 45.5 7.4 57 524-580 162-223 (695)
108 TIGR03849 arch_ComA phosphosul 65.0 17 0.00036 39.1 6.7 47 530-594 74-120 (237)
109 PF13380 CoA_binding_2: CoA bi 64.7 11 0.00024 35.6 4.9 43 526-592 65-107 (116)
110 cd02871 GH18_chitinase_D-like 64.4 23 0.00049 39.5 8.0 63 572-682 58-120 (312)
111 PRK15447 putative protease; Pr 63.6 21 0.00046 39.6 7.6 52 523-592 14-66 (301)
112 cd02742 GH20_hexosaminidase Be 63.2 19 0.00042 39.9 7.1 119 526-669 15-145 (303)
113 cd06568 GH20_SpHex_like A subg 62.7 22 0.00048 40.0 7.6 122 526-669 17-151 (329)
114 PRK10076 pyruvate formate lyas 62.6 24 0.00051 37.3 7.3 61 526-592 144-211 (213)
115 cd06545 GH18_3CO4_chitinase Th 61.4 21 0.00046 38.3 6.9 64 573-681 45-108 (253)
116 cd06565 GH20_GcnA-like Glycosy 61.4 27 0.00058 38.8 7.9 67 526-600 16-87 (301)
117 KOG3625 Alpha amylase [Carbohy 60.4 15 0.00033 45.7 5.9 63 644-709 496-568 (1521)
118 PLN03236 4-alpha-glucanotransf 58.8 23 0.00049 44.1 7.2 54 524-577 80-139 (745)
119 COG2730 BglC Endoglucanase [Ca 57.8 18 0.00039 41.9 5.9 59 529-594 75-136 (407)
120 PF02679 ComA: (2R)-phospho-3- 55.4 26 0.00057 37.8 6.2 49 528-594 85-133 (244)
121 PF00724 Oxidored_FMN: NADH:fl 54.4 45 0.00098 37.6 8.3 71 528-603 37-107 (341)
122 PF00728 Glyco_hydro_20: Glyco 54.2 16 0.00034 41.0 4.6 72 526-601 17-101 (351)
123 cd06570 GH20_chitobiase-like_1 51.6 59 0.0013 36.4 8.5 122 526-669 17-144 (311)
124 PLN03059 beta-galactosidase; P 51.4 28 0.00061 43.7 6.4 57 530-594 62-118 (840)
125 PLN03236 4-alpha-glucanotransf 51.4 27 0.0006 43.4 6.3 24 574-597 274-297 (745)
126 PF01120 Alpha_L_fucos: Alpha- 51.0 1.4E+02 0.003 33.9 11.5 63 529-592 93-156 (346)
127 PRK07094 biotin synthase; Prov 50.2 28 0.00061 38.7 5.8 65 530-602 129-193 (323)
128 TIGR01210 conserved hypothetic 49.6 33 0.00071 38.4 6.1 61 530-598 117-179 (313)
129 PF13204 DUF4038: Protein of u 49.3 42 0.00092 37.0 6.9 69 526-598 29-110 (289)
130 TIGR03356 BGL beta-galactosida 48.8 40 0.00087 39.4 6.9 64 525-595 52-115 (427)
131 PRK15452 putative protease; Pr 48.3 43 0.00093 39.4 7.0 56 530-599 13-69 (443)
132 cd04735 OYE_like_4_FMN Old yel 48.2 99 0.0021 35.1 9.8 29 573-603 77-105 (353)
133 PLN02950 4-alpha-glucanotransf 47.2 36 0.00078 43.5 6.6 50 775-824 789-838 (909)
134 PF08821 CGGC: CGGC domain; I 46.3 70 0.0015 30.1 6.8 53 527-592 52-104 (107)
135 TIGR00539 hemN_rel putative ox 46.1 37 0.0008 38.5 6.0 65 530-602 100-165 (360)
136 PF14701 hDGE_amylase: glucano 45.6 26 0.00056 40.8 4.6 40 644-685 361-405 (423)
137 PLN02635 disproportionating en 45.5 47 0.001 40.0 6.9 67 509-576 31-104 (538)
138 cd06547 GH85_ENGase Endo-beta- 45.0 52 0.0011 37.3 6.8 20 578-597 50-69 (339)
139 PRK08207 coproporphyrinogen II 44.9 46 0.001 39.6 6.7 65 530-602 269-334 (488)
140 TIGR00433 bioB biotin syntheta 44.7 53 0.0012 35.8 6.8 60 530-598 123-182 (296)
141 PF02446 Glyco_hydro_77: 4-alp 44.7 20 0.00043 42.7 3.6 55 524-578 15-72 (496)
142 KOG0496 Beta-galactosidase [Ca 43.3 46 0.001 40.4 6.3 59 530-596 52-110 (649)
143 PLN02803 beta-amylase 43.1 69 0.0015 38.1 7.5 64 526-602 106-172 (548)
144 PRK05628 coproporphyrinogen II 43.0 46 0.00099 38.0 6.1 65 530-602 108-173 (375)
145 PRK06256 biotin synthase; Vali 42.9 36 0.00079 38.1 5.2 60 530-598 152-211 (336)
146 PRK13210 putative L-xylulose 5 42.7 49 0.0011 35.7 6.1 52 529-592 18-70 (284)
147 cd02857 CD_pullulan_degrading_ 42.7 14 0.0003 34.2 1.6 101 345-465 7-113 (116)
148 PRK08208 coproporphyrinogen II 42.0 42 0.00091 39.1 5.7 65 530-602 141-206 (430)
149 COG4943 Predicted signal trans 41.9 30 0.00064 40.6 4.3 66 507-595 414-479 (524)
150 PF01373 Glyco_hydro_14: Glyco 41.2 32 0.0007 39.6 4.4 67 523-602 12-81 (402)
151 cd02931 ER_like_FMN Enoate red 41.2 1.9E+02 0.0041 33.3 10.8 28 573-602 82-110 (382)
152 cd06563 GH20_chitobiase-like T 40.9 65 0.0014 36.6 6.9 76 526-601 17-114 (357)
153 PF01212 Beta_elim_lyase: Beta 40.5 27 0.00057 38.7 3.6 58 525-595 107-166 (290)
154 PLN02801 beta-amylase 40.5 76 0.0017 37.6 7.3 65 525-602 35-102 (517)
155 COG1902 NemA NADH:flavin oxido 39.8 5.2E+02 0.011 29.7 13.8 29 573-603 82-110 (363)
156 cd06546 GH18_CTS3_chitinase GH 39.6 1.2E+02 0.0025 32.9 8.3 44 653-696 93-140 (256)
157 PF07071 DUF1341: Protein of u 39.0 77 0.0017 33.2 6.3 45 528-590 136-180 (218)
158 PRK05660 HemN family oxidoredu 39.0 56 0.0012 37.4 6.1 65 530-602 107-172 (378)
159 cd04733 OYE_like_2_FMN Old yel 38.4 2.7E+02 0.0057 31.4 11.3 29 573-603 81-109 (338)
160 PRK13523 NADPH dehydrogenase N 38.1 4.5E+02 0.0097 29.8 12.9 70 528-602 38-107 (337)
161 cd02874 GH18_CFLE_spore_hydrol 36.5 47 0.001 36.7 4.8 30 653-682 84-113 (313)
162 smart00812 Alpha_L_fucos Alpha 36.5 88 0.0019 36.1 7.1 116 530-682 84-203 (384)
163 cd02929 TMADH_HD_FMN Trimethyl 36.1 2.5E+02 0.0055 32.1 10.7 29 573-603 82-110 (370)
164 PTZ00445 p36-lilke protein; Pr 36.1 81 0.0018 33.4 6.1 63 527-592 29-96 (219)
165 cd02803 OYE_like_FMN_family Ol 36.1 1.2E+02 0.0026 33.7 8.0 29 573-603 76-104 (327)
166 PRK13347 coproporphyrinogen II 36.0 69 0.0015 37.6 6.3 65 530-602 152-217 (453)
167 cd04734 OYE_like_3_FMN Old yel 35.9 6.1E+02 0.013 28.7 13.7 68 528-603 34-104 (343)
168 cd07937 DRE_TIM_PC_TC_5S Pyruv 34.7 5.7E+02 0.012 27.9 12.8 93 528-695 92-186 (275)
169 PLN02905 beta-amylase 34.6 1.1E+02 0.0023 37.3 7.4 65 525-602 284-351 (702)
170 PLN00197 beta-amylase; Provisi 34.6 1.1E+02 0.0023 36.7 7.4 65 525-602 125-192 (573)
171 PRK01060 endonuclease IV; Prov 34.6 77 0.0017 34.2 6.0 51 528-590 13-63 (281)
172 TIGR00538 hemN oxygen-independ 34.5 68 0.0015 37.7 5.9 65 530-602 151-216 (455)
173 PRK05904 coproporphyrinogen II 34.4 72 0.0016 36.3 5.9 65 530-602 103-168 (353)
174 PRK10605 N-ethylmaleimide redu 34.4 4.7E+02 0.01 29.9 12.5 29 573-603 78-106 (362)
175 PRK13561 putative diguanylate 34.4 49 0.0011 40.5 4.9 74 524-598 531-615 (651)
176 PRK05939 hypothetical protein; 34.3 61 0.0013 37.4 5.4 62 535-596 105-170 (397)
177 COG0826 Collagenase and relate 34.3 1.1E+02 0.0023 35.0 7.1 53 530-594 16-69 (347)
178 cd05014 SIS_Kpsf KpsF-like pro 33.3 1.2E+02 0.0026 28.4 6.4 60 533-592 19-79 (128)
179 PLN02705 beta-amylase 33.2 1.1E+02 0.0024 37.1 7.1 65 525-602 266-333 (681)
180 PRK09856 fructoselysine 3-epim 32.5 1E+02 0.0022 33.0 6.6 50 529-591 15-64 (275)
181 COG2200 Rtn c-di-GMP phosphodi 32.4 1.1E+02 0.0024 33.0 6.7 71 526-597 135-216 (256)
182 PRK05967 cystathionine beta-ly 32.0 59 0.0013 37.6 4.8 28 570-597 162-189 (395)
183 PRK09249 coproporphyrinogen II 31.9 91 0.002 36.6 6.4 65 530-602 151-216 (453)
184 PLN02161 beta-amylase 31.8 1.4E+02 0.0029 35.6 7.5 65 525-602 115-182 (531)
185 KOG2499 Beta-N-acetylhexosamin 31.5 1.8E+02 0.0039 34.4 8.3 30 572-601 248-278 (542)
186 cd01335 Radical_SAM Radical SA 31.5 73 0.0016 31.3 4.8 65 530-601 88-152 (204)
187 TIGR03471 HpnJ hopanoid biosyn 31.4 95 0.002 36.6 6.5 64 530-601 287-350 (472)
188 COG0041 PurE Phosphoribosylcar 31.4 1.4E+02 0.0029 30.1 6.4 52 524-594 13-64 (162)
189 PRK09936 hypothetical protein; 31.4 1.1E+02 0.0023 34.0 6.2 54 530-597 41-95 (296)
190 cd00598 GH18_chitinase-like Th 31.1 1.8E+02 0.0039 29.6 7.9 30 653-682 85-114 (210)
191 PRK08446 coproporphyrinogen II 31.0 1E+02 0.0023 34.8 6.5 64 530-601 98-162 (350)
192 PRK10060 RNase II stability mo 30.7 53 0.0011 40.5 4.4 74 524-598 538-622 (663)
193 PRK08573 phosphomethylpyrimidi 30.6 86 0.0019 36.8 5.9 71 527-599 17-109 (448)
194 TIGR00542 hxl6Piso_put hexulos 30.0 1.1E+02 0.0023 33.2 6.1 53 528-591 17-69 (279)
195 cd02932 OYE_YqiM_FMN Old yello 29.7 5.6E+02 0.012 28.7 12.0 69 530-603 36-104 (336)
196 PLN02411 12-oxophytodienoate r 29.1 5.2E+02 0.011 29.8 11.8 29 573-603 86-114 (391)
197 PRK08599 coproporphyrinogen II 29.1 94 0.002 35.4 5.8 65 530-602 100-165 (377)
198 PF14883 GHL13: Hypothetical g 28.9 8.2E+02 0.018 27.3 12.4 123 528-678 18-142 (294)
199 smart00052 EAL Putative diguan 28.9 1.2E+02 0.0026 31.3 6.1 73 526-599 132-215 (241)
200 PRK11059 regulatory protein Cs 28.7 84 0.0018 38.5 5.6 75 524-599 530-615 (640)
201 TIGR01211 ELP3 histone acetylt 28.2 97 0.0021 37.2 5.8 65 530-602 206-270 (522)
202 cd00287 ribokinase_pfkB_like r 27.6 89 0.0019 31.2 4.7 55 530-597 40-94 (196)
203 TIGR03581 EF_0839 conserved hy 27.5 1.2E+02 0.0025 32.3 5.4 44 528-589 136-179 (236)
204 cd04747 OYE_like_5_FMN Old yel 27.2 4.6E+02 0.01 30.0 10.8 29 573-603 77-105 (361)
205 cd02930 DCR_FMN 2,4-dienoyl-Co 27.1 8.8E+02 0.019 27.4 13.1 71 528-603 34-104 (353)
206 COG2873 MET17 O-acetylhomoseri 27.1 1.3E+02 0.0028 34.5 6.1 71 523-597 112-187 (426)
207 PLN02389 biotin synthase 26.5 1.7E+02 0.0036 33.8 7.2 62 530-601 178-239 (379)
208 PF11852 DUF3372: Domain of un 26.4 57 0.0012 33.3 2.9 27 822-848 38-64 (168)
209 COG0520 csdA Selenocysteine ly 26.4 51 0.0011 38.2 3.0 62 533-595 129-200 (405)
210 cd04724 Tryptophan_synthase_al 26.3 1.3E+02 0.0028 32.3 5.8 50 528-599 92-141 (242)
211 cd07944 DRE_TIM_HOA_like 4-hyd 25.8 7.4E+02 0.016 26.9 11.7 46 530-595 85-130 (266)
212 PRK07379 coproporphyrinogen II 25.5 1.3E+02 0.0027 34.9 6.0 65 530-602 115-180 (400)
213 TIGR03127 RuMP_HxlB 6-phospho 24.7 2.1E+02 0.0046 28.7 6.9 54 535-592 51-104 (179)
214 PRK11829 biofilm formation reg 24.5 1.1E+02 0.0023 37.5 5.5 75 524-599 536-621 (660)
215 PRK06294 coproporphyrinogen II 24.4 1.4E+02 0.0031 34.1 6.1 65 530-602 103-168 (370)
216 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.2 1.7E+02 0.0038 27.2 5.7 69 523-592 8-78 (126)
217 PRK09997 hydroxypyruvate isome 23.5 1.8E+02 0.004 31.0 6.5 20 529-548 17-36 (258)
218 PRK08114 cystathionine beta-ly 23.4 71 0.0015 37.0 3.4 64 534-597 120-189 (395)
219 smart00729 Elp3 Elongator prot 23.4 1.8E+02 0.0038 29.0 6.0 63 530-600 100-163 (216)
220 PF03714 PUD: Bacterial pullan 23.1 1.3E+02 0.0028 27.7 4.5 37 175-215 46-82 (103)
221 PF13407 Peripla_BP_4: Peripla 23.0 1.8E+02 0.0038 30.4 6.1 48 523-592 38-85 (257)
222 cd00609 AAT_like Aspartate ami 22.9 1.5E+02 0.0033 32.2 5.9 54 531-598 123-176 (350)
223 PRK13125 trpA tryptophan synth 22.8 1.8E+02 0.0038 31.2 6.1 52 527-597 88-139 (244)
224 PRK01278 argD acetylornithine 22.5 1.7E+02 0.0036 33.3 6.2 58 525-599 164-221 (389)
225 cd00945 Aldolase_Class_I Class 22.5 2.3E+02 0.0051 28.2 6.7 58 526-599 64-125 (201)
226 cd01948 EAL EAL domain. This d 22.1 1.6E+02 0.0035 30.3 5.6 75 525-600 130-215 (240)
227 PRK04302 triosephosphate isome 22.0 1.6E+02 0.0035 31.0 5.5 44 533-594 78-121 (223)
228 cd03412 CbiK_N Anaerobic cobal 22.0 1.5E+02 0.0032 28.6 4.8 59 527-585 56-125 (127)
229 PF01791 DeoC: DeoC/LacD famil 21.9 75 0.0016 33.7 3.0 57 530-597 79-135 (236)
230 smart00518 AP2Ec AP endonuclea 21.9 2.2E+02 0.0048 30.5 6.8 53 528-592 11-63 (273)
231 PRK06582 coproporphyrinogen II 21.7 1.8E+02 0.0038 33.6 6.2 65 530-602 111-175 (390)
232 PRK09028 cystathionine beta-ly 21.7 1E+02 0.0022 35.7 4.2 28 570-597 159-186 (394)
233 PRK11359 cyclic-di-GMP phospho 21.6 71 0.0015 39.7 3.2 75 524-599 675-760 (799)
234 PLN02721 threonine aldolase 21.4 1.7E+02 0.0036 32.3 5.9 59 525-596 119-180 (353)
235 PRK09776 putative diguanylate 21.4 1.1E+02 0.0023 39.8 4.8 74 524-598 971-1055(1092)
236 PRK13209 L-xylulose 5-phosphat 21.3 1.9E+02 0.0042 31.1 6.2 53 529-592 23-75 (283)
237 cd05017 SIS_PGI_PMI_1 The memb 20.7 3E+02 0.0064 25.7 6.5 67 523-592 8-75 (119)
238 PRK08195 4-hyroxy-2-oxovalerat 20.7 9E+02 0.02 27.3 11.4 103 530-708 91-198 (337)
239 TIGR03234 OH-pyruv-isom hydrox 20.6 2.6E+02 0.0057 29.6 6.9 19 529-547 16-34 (254)
240 TIGR02666 moaA molybdenum cofa 20.6 2.6E+02 0.0055 31.3 7.1 60 530-596 102-162 (334)
241 TIGR03551 F420_cofH 7,8-dideme 20.5 1.2E+02 0.0025 34.3 4.4 64 530-599 141-204 (343)
242 PRK05799 coproporphyrinogen II 20.5 1.8E+02 0.004 33.0 6.0 65 530-602 99-164 (374)
243 COG1874 LacA Beta-galactosidas 20.4 1.4E+02 0.0031 36.9 5.2 57 527-596 30-90 (673)
244 cd04795 SIS SIS domain. SIS (S 20.4 1.2E+02 0.0025 26.1 3.5 58 535-592 19-79 (87)
245 PRK09856 fructoselysine 3-epim 20.4 3.5E+02 0.0076 28.9 7.9 61 526-595 89-150 (275)
246 COG1242 Predicted Fe-S oxidore 20.2 3.2E+02 0.0069 30.3 7.2 24 573-596 167-190 (312)
247 PLN02808 alpha-galactosidase 20.2 1.7E+02 0.0037 33.8 5.6 58 526-590 48-113 (386)
248 PRK00164 moaA molybdenum cofac 20.2 2.5E+02 0.0055 31.2 6.9 60 529-596 107-167 (331)
249 TIGR03586 PseI pseudaminic aci 20.1 2.5E+02 0.0054 31.7 6.8 71 523-594 13-97 (327)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=7.6e-177 Score=1537.90 Aligned_cols=845 Identities=72% Similarity=1.245 Sum_probs=791.4
Q ss_pred CcceeccccchhhhhccCCCCCCCccccccccceeccccCCCcccccccccccccccccCCCCCCCCCCCCCCCC---CC
Q 003004 1 MSTVTIRPLLPSYRRANLNFRDRTNILLKPNYINYSIKSAPNARRFCSFKKLQKITVSSSTSTSTSPATSTDTTP---VR 77 (858)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (858)
||||||||||+||||+++.++++++ .+|+||||++++|+||++||||+....+.-. ..++++++|++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 72 (894)
T PLN02784 1 MSTVCIESLLHHSGLEKNSKIGRGK--RSPSSLNLSLKSLTNGKSFCNFKMSVGVSST------TRRASSSDTALVETAQ 72 (894)
T ss_pred CCceeeHHHHhHHhhccccccCccc--ccccccccccccccCCcccccccCCCCcccc------cccccccceeeeeccc
Confidence 9999999999999999999977433 3499999999999999999999876544222 12467777877 56
Q ss_pred CCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCceEEEeeeeecCCCCCCccCCCCCCCCCCcccccc
Q 003004 78 PGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKD 157 (858)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~t~~~~~~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~ 157 (858)
..+++|+|.|++.++|+|||+|+|+|+ +++++|++|+|+||+|++|||||||++.+++++||++||++||||||+.+++
T Consensus 73 ~~~v~~kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~ 151 (894)
T PLN02784 73 SDDVFFKETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKD 151 (894)
T ss_pred cccceeeeeeeecccceecceeEEEEE-ccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecC
Confidence 889999999999999999999999997 7899999999999999999999999888889999999999999999999999
Q ss_pred cccccccccccCCCceeEEEEeecCCCCceeeEEEEEeCCccchhhcCCcceeEeCcccccCCCcccccccccccCcchH
Q 003004 158 YAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWPGAL 237 (858)
Q Consensus 158 ~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~~~g~df~v~l~~~~~~~~~~~~~~~~~~~w~~~~ 237 (858)
+||||||++++.|+..+.+.|+|+++++++||+||||++++|+||||||+||||||+++++++++++++++++.+|||.|
T Consensus 152 ~A~eT~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~~~~~~~~~~~~~~l 231 (894)
T PLN02784 152 YAIETPLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNNVGAKKGFGIWPGAL 231 (894)
T ss_pred eEEeccccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccceeehhhhcCcCcCcc
Confidence 99999999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCCCCCCCCccchhhhhccchhhhhcccccccceeeecceeEEEEeecCCCCceEEEEEcCCCCCeEE
Q 003004 238 GQLSKMILKADTSQSGIQDSSSESCELKQENKHLEGFYEELPIVKEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVV 317 (858)
Q Consensus 238 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~~~~~~~~~~~~v~~~td~~~~~vl 317 (858)
++||++++|+|+++++.+++++.+.++.++.|+|++||||+||+|++.++|.+.|+|+||++++|++|||+||+|+|+||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~vvl 311 (894)
T PLN02784 232 GQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGDVVV 311 (894)
T ss_pred ccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCCEEE
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccCCCCCcccCCCCCCCCceeeecccccccCcccCCCCcceeEEEecCccceeEEEEEcCCccccccCCCceeecc
Q 003004 318 HWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 397 (858)
Q Consensus 318 HW~v~~~~~~~W~~pp~~~~p~~~~~~~~a~~Tpf~~~~~~~~~~~~~~l~~~~~g~~fVl~~~~~~W~k~~g~df~v~l 397 (858)
||||||++++||++||++++|+||+++++||||||++.+++.++++.|+|+.+|.||+|||++++++||||+|+||||||
T Consensus 312 HWgV~k~~~~eW~~Pp~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~ld~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl 391 (894)
T PLN02784 312 HWGVCKDGAKTWEIPPEPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSLDGELEGLLFVLKLNEGTWLRCNGNDFYVPL 391 (894)
T ss_pred EeEeccCCCCcccCCCCCCCCCcceecccccccccccccCCCcceEEEecCCCeeEEEEEEECCCCchhhcCCccEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999966999999999999999
Q ss_pred CCCCCCCC---cccccccccCCCccccccccccchhhhHHHHhhhcccCcccchhhhccchhhhhhhhhHhhhhcchhhc
Q 003004 398 TSSSCLPA---ESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAEAYS 474 (858)
Q Consensus 398 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~tv~~~~~~~pav~Yq 474 (858)
..+++.++ ++|+|.. ...++++++..+|+++||++||++++|+++++++++..++.|..+++++++++|..|.
T Consensus 392 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (894)
T PLN02784 392 LTSSSLPTQTEQGQSEGK----TAKTNKEVSKSAYTDGIIGEIRNLVIDISSEKGQKTKTKELQESILQEIEKLAAEAYS 467 (894)
T ss_pred Cchhcccccccccccccc----cccccccccccccccchhhhhHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhhhhhe
Confidence 99988776 4444543 6677889999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccc-cCCCCCCCCCCCcccceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCC
Q 003004 475 IFRTTAPTFFEEAAVELE-ESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV 553 (858)
Q Consensus 475 IFp~~~DRF~n~g~~~~~-~~~p~~~~~~~~~~~yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~ 553 (858)
||+..+..|.+....... ..+|+.++..+++.++++++|+|+|+++.+|+++++|+++||||++||||+|||+|++++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~ 547 (894)
T PLN02784 468 IFRSTIPTFSEESVLEAERIQKPPIKICSGTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESV 547 (894)
T ss_pred eeccCCCCcChhhhhcchhhcCCcccccccccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCC
Confidence 999999999986665443 3568878888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCC
Q 003004 554 SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG 633 (858)
Q Consensus 554 s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~ 633 (858)
++|||++.|||.+|++|||.+||++||++||++||+||+|+|+||++..+.+.++.|..|.+.++|.+.....+++.|.+
T Consensus 548 s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~G 627 (894)
T PLN02784 548 SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQG 627 (894)
T ss_pred CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCC
Confidence 99999999999999999999999999999999999999999999999887666788888888889998877777888998
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccchhHHHHHHHhhcCCeEEEEEeeCCCCccc
Q 003004 634 RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY 713 (858)
Q Consensus 634 ~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~~~~i~~i~~~~~p~~liGE~w~~~~~~~ 713 (858)
+++++++.+|..+||||+.||+||++|.+|++||++++||||||||+|++||..|+++++++.+|.|+|||+|++..|..
T Consensus 628 rG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~ 707 (894)
T PLN02784 628 RGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTY 707 (894)
T ss_pred cCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEecccccccc
Confidence 89999999999999999999999999999999999899999999999999999999999999999999999999877778
Q ss_pred CCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccCCCCCCCCC
Q 003004 714 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQG 793 (858)
Q Consensus 714 G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleNHDt~R~~s 793 (858)
|+|+|+++.+++.|.+|++..++..++|||+++..+..++..+++|++++..+.++++++++|.++|+||+||||.+.+.
T Consensus 708 g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~ 787 (894)
T PLN02784 708 GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQG 787 (894)
T ss_pred CccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcc
Confidence 99999999999999999999888899999999999999998888999999888889999999999999999999999988
Q ss_pred CCCCChhHHHHHHHHHHhcCCceeEechhhHHHHHHHHHHHHHHHHhCccccCCCeEEEecCCCC
Q 003004 794 HWRFPGGREMQGYAYILTHPGTPSVFYDHIFSHYRQEIEALLSVRKRNKIHCRSRVSIRMLTKYI 858 (858)
Q Consensus 794 ~~~~~~~~~klA~allltlPGiP~IYYGdE~~~l~~~~kkLi~lRk~~paL~~G~~~~l~a~~~~ 858 (858)
.|.++..+..+|||+|||+||+|||||||-++.+.+.|++||.+|+++-+-.+..++++.++..+
T Consensus 788 ~w~~p~~k~~~AYAyILthpG~PcVFy~h~y~~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~ 852 (894)
T PLN02784 788 HWRFPEGKEMQGYAYILTHPGTPAVFYDHIFSHYHPEIASLISLRNRQKIHCRSEVKITKAERDV 852 (894)
T ss_pred cCCCCccchhhHHHHHHcCCCcceEEehhhhhhhHHHHHHHHHHHHHcCCCCCCceeEEEecCCc
Confidence 88888888999999999999999999999988888899999999999999999999999988753
No 2
>PLN02361 alpha-amylase
Probab=100.00 E-value=8.2e-64 Score=561.21 Aligned_cols=346 Identities=52% Similarity=1.041 Sum_probs=301.8
Q ss_pred cceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHc
Q 003004 507 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 586 (858)
Q Consensus 507 ~yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~r 586 (858)
..++++|+|+|+++ ++.++++|++|||||++||||+|||+|++++.++|||++.|||++||+|||.+||++||++||++
T Consensus 10 ~~~v~lQ~F~W~~~-~~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~ 88 (401)
T PLN02361 10 GREILLQAFNWESH-KHDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY 88 (401)
T ss_pred CCcEEEEEEeccCC-ccHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHc
Confidence 35789999999987 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeeccccccccCCCCCccccCCc-CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003004 587 GMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 665 (858)
Q Consensus 587 GIkVILD~V~NHtg~~~~~~~g~w~~~~g~-~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~ 665 (858)
||+||+|+|+||++.......+.|..|.+. .+|......... .+.+++..++++..+||||++||+||++++++++
T Consensus 89 gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~---~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~ 165 (401)
T PLN02361 89 NVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCT---GGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLI 165 (401)
T ss_pred CCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCcccccccc---CCCCCccCCCCCccCCccCCCCHHHHHHHHHHHH
Confidence 999999999999976554445555555442 345433221111 1223445667788999999999999999999999
Q ss_pred HhHhccCccEEEeCCcccchhHHHHHHHhhcCCeEEEEEeeCCCCcc--cCCCCccchHHHHHHHHHHHhcCCCccccch
Q 003004 666 WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT--YGEMDHNQDAHRQRIIDWINAASGTAGAFDV 743 (858)
Q Consensus 666 ~Wl~e~GIDGFRlDaa~~~~~~~i~~i~~~~~p~~liGE~w~~~~~~--~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~ 743 (858)
||++++||||||+|+|+|+..+|+++++++.+|.|+|||+|++..+. +|.++|+++.+++.+.+|++..++..++|||
T Consensus 166 wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF 245 (401)
T PLN02361 166 WLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDF 245 (401)
T ss_pred HHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecH
Confidence 88877999999999999999999999999888999999999874332 4569999888899999999988778899999
Q ss_pred hhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccCCCCCCCCCCCCCChhHHHHHHHHHHhcCCceeEechhh
Q 003004 744 TTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHI 823 (858)
Q Consensus 744 ~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleNHDt~R~~s~~~~~~~~~klA~allltlPGiP~IYYGdE 823 (858)
+++..+..++. .+++++.+..+.+.++.+++|.++||||+||||+|+++.+..+..++++|+|+|||+||+|||||||-
T Consensus 246 ~l~~~l~~a~~-~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~ 324 (401)
T PLN02361 246 TTKGILQEAVK-GQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHF 324 (401)
T ss_pred HHHHHHHHHHh-hhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeeccc
Confidence 99999999994 56888888777777888889999999999999999999888888999999999999999999999997
Q ss_pred HH---HHHHHHHHHHHHHHhCccccCCCeEEEecCCC
Q 003004 824 FS---HYRQEIEALLSVRKRNKIHCRSRVSIRMLTKY 857 (858)
Q Consensus 824 ~~---~l~~~~kkLi~lRk~~paL~~G~~~~l~a~~~ 857 (858)
++ ++.++|++|+.|||+++++++|.++++.+++.
T Consensus 325 ~~~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~ 361 (401)
T PLN02361 325 YDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSN 361 (401)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCC
Confidence 63 69999999999999999999999999999875
No 3
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=2.1e-63 Score=563.90 Aligned_cols=351 Identities=47% Similarity=0.973 Sum_probs=295.4
Q ss_pred cceeeeeeecccc-CCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcC-CCCCCHHHHHHHHHHHH
Q 003004 507 GFEILCQGFNWES-HKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGNIDELKDVVNKFH 584 (858)
Q Consensus 507 ~yei~~~~F~Wd~-~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~ID-p~lGt~edfk~LV~aAH 584 (858)
..++++|+|+|++ +.+|||++||++|||||++||||+|||+|++++.++|||++.|||+|| ++|||.+||++||++||
T Consensus 23 ~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 23 AGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred CCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 3578999999998 557899999999999999999999999999999999999999999999 59999999999999999
Q ss_pred HcCCEEEEEEeeccccccccCCCCCccccCC-----cCCCCCCCccCCCCCCC-CCCCCCCCCCCCCCCCCCCCcHHHHH
Q 003004 585 DVGMKILGDVVLNHRCAHYQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRK 658 (858)
Q Consensus 585 ~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g-----~~~w~~~~~~~~~p~f~-~~g~~~~~~~~~~lPdLN~~np~Vr~ 658 (858)
++|||||+|+|+||++.++.+..+.|..+.+ ..+|.......+...|. +.+++.+++++.++||||++||+||+
T Consensus 103 ~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~ 182 (428)
T PLN00196 103 GKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQR 182 (428)
T ss_pred HCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHH
Confidence 9999999999999999887644444533322 23443322222222232 33556677888999999999999999
Q ss_pred HHHHHHHHhHhccCccEEEeCCcccchhHHHHHHHhhcCCeEEEEEeeCCCCcc-cCCCCccchHHHHHHHHHHHhcCCC
Q 003004 659 DIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT-YGEMDHNQDAHRQRIIDWINAASGT 737 (858)
Q Consensus 659 ~i~~~l~~Wl~e~GIDGFRlDaa~~~~~~~i~~i~~~~~p~~liGE~w~~~~~~-~G~mnY~~~~~~~~l~~~l~~~~~~ 737 (858)
+|+++++||++++||||||+|+|+|++.+|+++++++.+|.|+|||+|++..|. .+...|.++.+++.+.+|++..++.
T Consensus 183 ~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~ 262 (428)
T PLN00196 183 ELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGA 262 (428)
T ss_pred HHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCc
Confidence 999999999888999999999999999999999988888999999999875543 5667888777889999999976644
Q ss_pred c---cccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccCCCCCCCCCCCCCChhHHHHHHHHHHhcCC
Q 003004 738 A---GAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPG 814 (858)
Q Consensus 738 ~---~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleNHDt~R~~s~~~~~~~~~klA~allltlPG 814 (858)
. ..|||++...+..++.. +.|++.+....+.++..++|..+||||+||||.|+++.+..+.+++++|+|++||+||
T Consensus 263 ~~~~~~fDF~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG 341 (428)
T PLN00196 263 ASPATVFDFTTKGILNVAVEG-ELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPG 341 (428)
T ss_pred cCcceeecccchHHHHHHhcC-CchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchHHHHHHHHHcCCC
Confidence 3 48999998766666543 4667766555566777888999999999999999999887777888999999999999
Q ss_pred ceeEechhhHH-HHHHHHHHHHHHHHhCccccCCCeEEEecCCCC
Q 003004 815 TPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVSIRMLTKYI 858 (858)
Q Consensus 815 iP~IYYGdE~~-~l~~~~kkLi~lRk~~paL~~G~~~~l~a~~~~ 858 (858)
+||||||+-+. .+.+.|++|+++||++++|+.|+++++.+++.+
T Consensus 342 ~P~IyYg~~~~~~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~ 386 (428)
T PLN00196 342 NPCIFYDHFFDWGLKEEIAALVSIRNRNGITPTSELRIMEADADL 386 (428)
T ss_pred cceEeeCCCcCccHHHHHHHHHHHHHhCCCcCCccEEEEEecCCE
Confidence 99999998773 578899999999999999999999999988653
No 4
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=4.7e-64 Score=593.96 Aligned_cols=424 Identities=16% Similarity=0.209 Sum_probs=288.5
Q ss_pred eeeccCCCCCCCCcccccccccCCCccccccccccchhhhHHHHhhhcc---cCcccchhhhccchhhhhhhhhHhhhhc
Q 003004 393 FYIPLTSSSCLPAESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLV---SDFSSDISRKTKSKEAQKSILLEIEKLA 469 (858)
Q Consensus 393 f~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~tv~~~~~~~p 469 (858)
-.++|...+.. +..+.|.+ ++......+..+|+|.++.+=..+. .|... ....+...+|.+++ .++|
T Consensus 47 ~~~~m~~~~~~---~~~~~~~~--~~~~~~~~~~~~Y~F~l~~~~~~~~~~~~g~~~--~~~~~~~~f~~~~~---~~~P 116 (598)
T PRK10785 47 YLLPMEKQRSQ---PQVTAWRA--SLPLNSGQPRRRYSFKLLWHDRQRWFTPQGFSR--RPPARLEQFAVDVP---DQGP 116 (598)
T ss_pred EEEEeEEeecC---CCceEEEE--EEEcCCCCceEEEEEEEEeCCEEEEEcCCceee--ccCCCccceEeeCC---CCCC
Confidence 36788766554 23345644 4444334567889998853111111 12211 11112345777655 4445
Q ss_pred -----chhhccccccccccccccccccccCCC------CC-CC---CCCCcccceeeeeeeccccCCCCCcHHHHHHHHH
Q 003004 470 -----AEAYSIFRTTAPTFFEEAAVELEESKP------PA-KI---SPGTGTGFEILCQGFNWESHKSGRWYMELKEKAT 534 (858)
Q Consensus 470 -----av~YqIFp~~~DRF~n~g~~~~~~~~p------~~-~~---~~~~~~~yei~~~~F~Wd~~~~GGdl~GI~ekLd 534 (858)
+|+||||| |||+| |++.++.... .. .. .+++...++.....|. ||||+||++|||
T Consensus 117 ~W~~~~v~YqIfp---DRF~n-g~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~------GGDl~GI~~kLd 186 (598)
T PRK10785 117 QWVADQVFYQIFP---DRFAR-SLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFY------GGDLDGISEKLP 186 (598)
T ss_pred chhhcCEEEEech---hhhcC-CCcccCccCCceeeccCCCcccccCcCCCccccccccccc------CcCHHHHHHHHH
Confidence 99999999 99999 6664431100 00 00 0111111112223444 999999999999
Q ss_pred HHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccC
Q 003004 535 ELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFG 614 (858)
Q Consensus 535 YLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~ 614 (858)
|||+||||+|||+|||+++++|||++.||++|||+|||+++|++||++||++|||||||+|+||||.+|. |+...
T Consensus 187 YL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~-----~f~~~ 261 (598)
T PRK10785 187 YLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP-----WFDRH 261 (598)
T ss_pred HHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH-----HHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999873 11000
Q ss_pred --Cc-CCCCCCCcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHH----HHHHhHhc-cCccEEEeCCccc--
Q 003004 615 --GR-LNWDDRAVV-ADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE----WLCWLRNE-IGYDGWRLDFVRG-- 683 (858)
Q Consensus 615 --g~-~~w~~~~~~-~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~----~l~~Wl~e-~GIDGFRlDaa~~-- 683 (858)
+. -++.....+ .++..|...+.+.+|+++..||+||++||+||++|++ ++++|+++ +||||||||+|++
T Consensus 262 ~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~ 341 (598)
T PRK10785 262 NRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLG 341 (598)
T ss_pred hccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhc
Confidence 00 011111111 1222233344566778889999999999999999995 89999975 8999999999985
Q ss_pred ----------chhHHHHHHHhhcCCeEEEEEeeCCC-Ccc-----cCCCCccchHHHHHHHHHHHhcCCCc--cccchhh
Q 003004 684 ----------FWGGYVKDYLEATEPYFAVGEYWDSL-SYT-----YGEMDHNQDAHRQRIIDWINAASGTA--GAFDVTT 745 (858)
Q Consensus 684 ----------~~~~~i~~i~~~~~p~~liGE~w~~~-~~~-----~G~mnY~~~~~~~~l~~~l~~~~~~~--~~fD~~l 745 (858)
||+++.+++.+..+++++|||+|++. .|+ ++.|||. .|...+..|+....... ...+.
T Consensus 342 ~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~--~f~~~~~~~~~~~~~~~~~~~~~~-- 417 (598)
T PRK10785 342 EGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNYR--GFAFPLRAFLANTDIAYHPQQIDA-- 417 (598)
T ss_pred cccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccch--hhhhHHHHHhhccccccCccCCCH--
Confidence 45555444333334499999999763 233 4668884 25667777775322110 00111
Q ss_pred HHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccCCCCCCCCCCCCCChhHHHHHHHHHHhcCCceeEechhhH-
Q 003004 746 KGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF- 824 (858)
Q Consensus 746 ~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleNHDt~R~~s~~~~~~~~~klA~allltlPGiP~IYYGdE~- 824 (858)
..+...+.. ... ..+... ...++||++|||++|+.+.+..+..++++|++++||+||+||||||||+
T Consensus 418 -~~~~~~l~~-----~~~--~~~~~~----~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYGdE~G 485 (598)
T PRK10785 418 -QTCAAWMDE-----YRA--GLPHQQ----QLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYGDEVG 485 (598)
T ss_pred -HHHHHHHHH-----HHH--hCCHHH----HHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEeeeecc
Confidence 111111110 000 001000 0245799999999999998877788999999999999999999999998
Q ss_pred ---------------------HHHHHHHHHHHHHHHhCccccCCCeEEEecCCC
Q 003004 825 ---------------------SHYRQEIEALLSVRKRNKIHCRSRVSIRMLTKY 857 (858)
Q Consensus 825 ---------------------~~l~~~~kkLi~lRk~~paL~~G~~~~l~a~~~ 857 (858)
.+++++||+||+|||++|+|+.|+++++.+++.
T Consensus 486 ~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~ 539 (598)
T PRK10785 486 LDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEGN 539 (598)
T ss_pred ccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCC
Confidence 269999999999999999999999999987653
No 5
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=9.6e-57 Score=531.83 Aligned_cols=342 Identities=19% Similarity=0.282 Sum_probs=232.1
Q ss_pred chhhccccccccccccccccccccCCCCCCCCCCCcccceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCC
Q 003004 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 549 (858)
Q Consensus 470 av~YqIFp~~~DRF~n~g~~~~~~~~p~~~~~~~~~~~yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PI 549 (858)
++|||||| |||+| |++.++ .+..+ .+++. -....|. ||||+||++|||||++||||+|||+||
T Consensus 190 aviYqI~~---DRF~n-Gd~~Nd--~~~g~--~~d~~---~~~~~f~------GGdl~Gi~~kLdyl~~LGv~aIwlsPi 252 (683)
T PRK09505 190 ATVYFVLT---DRFEN-GDPSND--HSYGR--HKDGM---QEIGTFH------GGDLRGLTEKLDYLQQLGVNALWISSP 252 (683)
T ss_pred CcEEEEeh---hhhcC-CCcccc--cccCc--CCCCc---cccCccc------CCCHHHHHHhhHHHHHcCCCEEEeCcc
Confidence 78899999 99999 666544 11111 01111 1124565 999999999999999999999999999
Q ss_pred CCC---------------CCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccccc-C--------
Q 003004 550 TES---------------VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ-N-------- 605 (858)
Q Consensus 550 fes---------------~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~-~-------- 605 (858)
+++ .++|||++.||++|||+||+++||++||++||++|||||||+|+||+|..+. +
T Consensus 253 ~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~ 332 (683)
T PRK09505 253 LEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGA 332 (683)
T ss_pred ccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhh
Confidence 986 2689999999999999999999999999999999999999999999995321 0
Q ss_pred --------------CCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCC----------------------CCCCCCCC
Q 003004 606 --------------QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD----------------------NFHAAPNI 649 (858)
Q Consensus 606 --------------~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~----------------------~~~~lPdL 649 (858)
....|++..+ .+|.... +...|.....+..|| ....||||
T Consensus 333 ~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~---~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl 408 (683)
T PRK09505 333 LYLSGDENKKTLGERWSDWQPAAG-QNWHSFN---DYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDI 408 (683)
T ss_pred hhhhccccccccCccccccccccc-ccccccc---cccccCCccccccccccccccccccccccccccccccccccCCcc
Confidence 0011221111 1222110 000111001111111 12468888
Q ss_pred CCC-----------------------cHHHHHHHHHHHHHhHhccCccEEEeCCcccchhHHHHHHHhh----------c
Q 003004 650 DHS-----------------------QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA----------T 696 (858)
Q Consensus 650 N~~-----------------------np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~~~~i~~i~~~----------~ 696 (858)
|++ |++||++|++|+++|++++||||||+|+|+|+..+|++++.+. .
T Consensus 409 ~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~ 488 (683)
T PRK09505 409 KTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKA 488 (683)
T ss_pred cccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 876 4599999999999999889999999999997765554444221 1
Q ss_pred --------CCeEEEEEeeCCCCcccCCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhc-cchhhcccccCC
Q 003004 697 --------EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDR-CEYWRLSDEKGK 767 (858)
Q Consensus 697 --------~p~~liGE~w~~~~~~~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~-~~~~~l~~~~~~ 767 (858)
++++++||+|..... ...|+. .+..+.++|++...+..+... ..+..+....
T Consensus 489 ~~d~~~~~~~~~~vGEvw~~~~~---------------~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~-- 549 (683)
T PRK09505 489 NPDKALDDAPFWMTGEAWGHGVM---------------KSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQM-- 549 (683)
T ss_pred ccccccccCCeEEEEEecCCchh---------------hHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHH--
Confidence 248999999964210 011111 123445555444332222110 0011111100
Q ss_pred CCCCcCCCCCceEEcccCCCCCCCCCCCCCChhHHHHHHHHHHhcCCceeEechhhH-----------------------
Q 003004 768 PPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF----------------------- 824 (858)
Q Consensus 768 ~~~l~~~~p~~~vnfleNHDt~R~~s~~~~~~~~~klA~allltlPGiP~IYYGdE~----------------------- 824 (858)
.... ....+++|++|||++|+.+.... ..+.++|++++||+||+|+||||||+
T Consensus 550 ~~~~---~~~~~l~FLdNHDt~Rf~s~~~~-~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~ 625 (683)
T PRK09505 550 AEKL---QDFNVLSYLSSHDTRLFFEGGQS-YAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQE 625 (683)
T ss_pred hhhc---CccceeecccCCChhhhhhhcCc-hHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccc
Confidence 0000 11346799999999999987654 37889999999999999999999998
Q ss_pred -----HHHHHHHHHHHHHHHhCccccCCCeEEEecC
Q 003004 825 -----SHYRQEIEALLSVRKRNKIHCRSRVSIRMLT 855 (858)
Q Consensus 825 -----~~l~~~~kkLi~lRk~~paL~~G~~~~l~a~ 855 (858)
.+++++||+|++||++||+|+.|+++.+..+
T Consensus 626 ~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l~~~ 661 (683)
T PRK09505 626 VSGKSAALLAHWQKLGQFRARHPAIGAGKQTTLSLK 661 (683)
T ss_pred cccchHHHHHHHHHHHHHHhhCHHhhCCceEEeccC
Confidence 1589999999999999999999999988543
No 6
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=6.7e-55 Score=505.34 Aligned_cols=328 Identities=27% Similarity=0.484 Sum_probs=245.3
Q ss_pred ceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC---CCCCCCccCC---------CcCCCCCCHHH
Q 003004 508 FEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLY---------NLSSRYGNIDE 575 (858)
Q Consensus 508 yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s---~hGYd~~Dy~---------~IDp~lGt~ed 575 (858)
.++++|+|+|+++.+|.+++||++|||||++||||+|||+||+++.+ +|||++.||+ +|||+|||++|
T Consensus 3 ~~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~d 82 (479)
T PRK09441 3 NGTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEE 82 (479)
T ss_pred CceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHH
Confidence 35799999999998888999999999999999999999999999875 6999999999 79999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEeeccccccccC---------CC------CCccccCCcCCCCCCCcc----------CCCCC
Q 003004 576 LKDVVNKFHDVGMKILGDVVLNHRCAHYQN---------QN------GVWNIFGGRLNWDDRAVV----------ADDPH 630 (858)
Q Consensus 576 fk~LV~aAH~rGIkVILD~V~NHtg~~~~~---------~~------g~w~~~~g~~~w~~~~~~----------~~~p~ 630 (858)
||+||++||++|||||+|+|+|||+..+.. ++ +.+..+. .|.....+ .....
T Consensus 83 l~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 159 (479)
T PRK09441 83 LLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIE---GWTRFTFPGRGGKYSDFKWHWYH 159 (479)
T ss_pred HHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeec---ccccccCCCCCCcCCcceeCCcC
Confidence 999999999999999999999999964320 00 0011100 11100000 00000
Q ss_pred CCC---------------CCCCCCC----------CCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccch
Q 003004 631 FQG---------------RGNKSSG----------DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW 685 (858)
Q Consensus 631 f~~---------------~g~~~~~----------~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~ 685 (858)
|.. .+....| ..+..|||||++||+|+++|+++++||++++||||||+|+|+|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~ 239 (479)
T PRK09441 160 FSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID 239 (479)
T ss_pred CCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC
Confidence 100 0000111 123569999999999999999999999977999999999999887
Q ss_pred hHHHHHHHhh----cC-CeEEEEEeeCCCCcccCCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhh
Q 003004 686 GGYVKDYLEA----TE-PYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWR 760 (858)
Q Consensus 686 ~~~i~~i~~~----~~-p~~liGE~w~~~~~~~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~ 760 (858)
.+++++++++ .+ +++++||+|.+. ...+..|++..+...+.|||++...+..++.......
T Consensus 240 ~~f~~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~ 305 (479)
T PRK09441 240 AWFIKEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYD 305 (479)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccc
Confidence 7777666654 22 499999999762 2356677765544467999999888888876543333
Q ss_pred cccccCCCCCCcCCCCCceEEcccCCCCCCCCCCCCCChh-HHHHHHHHHHhcC-CceeEechhhHH--------HHHHH
Q 003004 761 LSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-REMQGYAYILTHP-GTPSVFYDHIFS--------HYRQE 830 (858)
Q Consensus 761 l~~~~~~~~~l~~~~p~~~vnfleNHDt~R~~s~~~~~~~-~~klA~allltlP-GiP~IYYGdE~~--------~l~~~ 830 (858)
+..... .......+..+++||+|||++|+.+....... ..++|+++|||+| |+||||||||++ +++++
T Consensus 306 l~~~~~--~~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~~ 383 (479)
T PRK09441 306 MRNIFD--GTLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKEK 383 (479)
T ss_pred hHhhhC--cchhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHHH
Confidence 333221 11112245678999999999999886543222 3689999999999 999999999984 59999
Q ss_pred HHHHHHHHHhCccccCCCeEEEecCCC
Q 003004 831 IEALLSVRKRNKIHCRSRVSIRMLTKY 857 (858)
Q Consensus 831 ~kkLi~lRk~~paL~~G~~~~l~a~~~ 857 (858)
|++||+|||++ +.|.+..+.+++.
T Consensus 384 i~~Li~lRk~~---~~G~~~~~~~~~~ 407 (479)
T PRK09441 384 LDKLLLARKNF---AYGEQTDYFDHPN 407 (479)
T ss_pred HHHHHHHHHHh---CCCCeeEeecCCC
Confidence 99999999985 4798888877654
No 7
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=2.8e-52 Score=489.53 Aligned_cols=315 Identities=20% Similarity=0.270 Sum_probs=219.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC-CCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+|||+||++|||||++||||+|||+|||++++ +|||++.||++|||+||++++|++||++||++||+||||+|+||+|.
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~ 103 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSD 103 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCC
Confidence 59999999999999999999999999999986 79999999999999999999999999999999999999999999999
Q ss_pred ccc----------CCCCCccccCCc-CCCCCCCcc-C--CCCCC---CCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003004 602 HYQ----------NQNGVWNIFGGR-LNWDDRAVV-A--DDPHF---QGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWL 664 (858)
Q Consensus 602 ~~~----------~~~g~w~~~~g~-~~w~~~~~~-~--~~p~f---~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l 664 (858)
+|. ++...|+.+.+. ..+...... . ....+ ...+.++...++..+|+||+.||+||++|.+++
T Consensus 104 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~ 183 (539)
T TIGR02456 104 QHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVM 183 (539)
T ss_pred CCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHH
Confidence 873 112223221110 000000000 0 00001 011222333456789999999999999999999
Q ss_pred HHhHhccCccEEEeCCcccc-----------------hhHHHHHHHhhcCCeEEEEEeeCCCCcccCCCCccchHHHHHH
Q 003004 665 CWLRNEIGYDGWRLDFVRGF-----------------WGGYVKDYLEATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRI 727 (858)
Q Consensus 665 ~~Wl~e~GIDGFRlDaa~~~-----------------~~~~i~~i~~~~~p~~liGE~w~~~~~~~G~mnY~~~~~~~~l 727 (858)
++|+ ++||||||||+++++ |+++.+.+.+..++++++||++.. ...+
T Consensus 184 ~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~~---------------~~~~ 247 (539)
T TIGR02456 184 RFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQW---------------PEEV 247 (539)
T ss_pred HHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCCC---------------HHHH
Confidence 9999 699999999998653 444433322223349999998642 2234
Q ss_pred HHHHHhc-C-CCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccCCCCC----------------
Q 003004 728 IDWINAA-S-GTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTG---------------- 789 (858)
Q Consensus 728 ~~~l~~~-~-~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleNHDt~---------------- 789 (858)
..|+... + +....|+|++...+...+...+...+........... .+...++|++|||+.
T Consensus 248 ~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~~--~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~ 325 (539)
T TIGR02456 248 VAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDIP--DSCQWCIFLRNHDELTLEMVTDEERDFMYAA 325 (539)
T ss_pred HHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhcc--CCCceeeecCCCCccCccccChhhhhhhhhh
Confidence 4554321 1 3456677766543332222111111111100000000 113457899999995
Q ss_pred ---------------CCCCCCCCChhHHHHHHHHHHhcCCceeEechhhHH-----------------------------
Q 003004 790 ---------------STQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIFS----------------------------- 825 (858)
Q Consensus 790 ---------------R~~s~~~~~~~~~klA~allltlPGiP~IYYGdE~~----------------------------- 825 (858)
|+.+.+..+..++++|++++||+||+|+||||+|++
T Consensus 326 ~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~~~~~~~~R~pm~W~~~~~~gfs~ 405 (539)
T TIGR02456 326 YAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIWLGDRNGVRTPMQWSPDRNAGFSS 405 (539)
T ss_pred ccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCccCCCcCccCCcCcCCCCCCCCCC
Confidence 444444445667899999999999999999999982
Q ss_pred -------------------------------HHHHHHHHHHHHHHhCccccCCCeEEEecC
Q 003004 826 -------------------------------HYRQEIEALLSVRKRNKIHCRSRVSIRMLT 855 (858)
Q Consensus 826 -------------------------------~l~~~~kkLi~lRk~~paL~~G~~~~l~a~ 855 (858)
+++++||+||+||+++++|+.|+++.+..+
T Consensus 406 ~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~~~ 466 (539)
T TIGR02456 406 ADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLPTG 466 (539)
T ss_pred CCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEecC
Confidence 168899999999999999999999999874
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.7e-51 Score=482.36 Aligned_cols=317 Identities=20% Similarity=0.290 Sum_probs=216.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCC-CCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSP-EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~-hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+|+|+||++|||||++|||++|||+|||+++++ |||++.||++|||+|||+++|++||++||++||+||||+|+|||+.
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~ 102 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTST 102 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccccc
Confidence 489999999999999999999999999999865 6999999999999999999999999999999999999999999999
Q ss_pred ccc---------CCCCCccccCCc-----CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 003004 602 HYQ---------NQNGVWNIFGGR-----LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWL 667 (858)
Q Consensus 602 ~~~---------~~~g~w~~~~g~-----~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~W 667 (858)
+|. .++..|+.+... .+|........+......+.++...+...+||||+.||+|+++|.++++||
T Consensus 103 ~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W 182 (543)
T TIGR02403 103 EHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFW 182 (543)
T ss_pred chHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHH
Confidence 873 122233322211 011110000001111123445555667789999999999999999999999
Q ss_pred HhccCccEEEeCCcccch-----------------------hHHHHHHHh---hcCCeEEEEEeeCCCC-----ccc---
Q 003004 668 RNEIGYDGWRLDFVRGFW-----------------------GGYVKDYLE---ATEPYFAVGEYWDSLS-----YTY--- 713 (858)
Q Consensus 668 l~e~GIDGFRlDaa~~~~-----------------------~~~i~~i~~---~~~p~~liGE~w~~~~-----~~~--- 713 (858)
+ ++||||||||+|++++ .+|++++.+ ..+++|+|||+|.... |..
T Consensus 183 ~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~~~~~~y~~~~~ 261 (543)
T TIGR02403 183 R-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVGEMSSTTIENCIRYSNPEN 261 (543)
T ss_pred H-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeEEEEEeCCCCHHHHHhhhCCCC
Confidence 9 6899999999998764 235555543 3345999999996421 110
Q ss_pred CCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccCCCCCCCCC
Q 003004 714 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQG 793 (858)
Q Consensus 714 G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleNHDt~R~~s 793 (858)
+.++...+ |......+..+.......++.. .+...+.. + .. ... ......++|++|||++|+.+
T Consensus 262 ~~~d~~~n-f~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~---~--~~------~~~-~~~~~~~~fl~NHD~~R~~s 325 (543)
T TIGR02403 262 KELSMVFT-FHHLKVDYPNGEKWTLAKFDFA---KLKEIFST---W--QT------GMQ-AGGGWNALFWNNHDQPRAVS 325 (543)
T ss_pred CeeCeEEC-hhhhhchhccccccccCCCCHH---HHHHHHHH---H--HH------hcc-ccCcceeeecCCCChhhHHH
Confidence 01111000 1111122221100000011111 11111100 0 00 000 00123468999999999999
Q ss_pred CCCCCh----hHHHHHHHHHHhcCCceeEechhhHH--------------------------------------------
Q 003004 794 HWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS-------------------------------------------- 825 (858)
Q Consensus 794 ~~~~~~----~~~klA~allltlPGiP~IYYGdE~~-------------------------------------------- 825 (858)
+++... ...++|++++||+||+||||||||++
T Consensus 326 ~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd 405 (543)
T TIGR02403 326 RFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRD 405 (543)
T ss_pred hcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCC
Confidence 886432 35788889999999999999999871
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHhCccccCCCeEEEecCC
Q 003004 826 ------------------------------------------HYRQEIEALLSVRKRNKIHCRSRVSIRMLTK 856 (858)
Q Consensus 826 ------------------------------------------~l~~~~kkLi~lRk~~paL~~G~~~~l~a~~ 856 (858)
+++++||+||+|||++|+|+.|+++.+..++
T Consensus 406 ~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~~~~~ 478 (543)
T TIGR02403 406 NSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFLLPDD 478 (543)
T ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEeecCC
Confidence 1668999999999999999999999987653
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=3.2e-51 Score=479.78 Aligned_cols=309 Identities=18% Similarity=0.248 Sum_probs=213.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC-CCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+|||+||+++||||++|||++|||+||++++. +|||++.||++|||+|||++||++||++||++||+||||+|+||+|.
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 58999999999999999999999999999876 69999999999999999999999999999999999999999999999
Q ss_pred ccc---------CCCCCccccCCcCCCCCCCccCCCC-CCC--------CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 003004 602 HYQ---------NQNGVWNIFGGRLNWDDRAVVADDP-HFQ--------GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEW 663 (858)
Q Consensus 602 ~~~---------~~~g~w~~~~g~~~w~~~~~~~~~p-~f~--------~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~ 663 (858)
+|. +++..|+.+.... ....+..+. .|. ..+.++...+...+||||++||+||++|+++
T Consensus 109 ~~~wf~~~~~~~~~y~d~y~~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~ 185 (551)
T PRK10933 109 QHAWFREALNKESPYRQFYIWRDGE---PETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKV 185 (551)
T ss_pred chhHHHhhcCCCCCCcCceEecCCC---CCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHH
Confidence 873 1222333221100 000000100 010 1123333445568999999999999999999
Q ss_pred HHHhHhccCccEEEeCCcccchh-----------------------HHHHHHHhhc---CCeEEEEEeeCCCC-----c-
Q 003004 664 LCWLRNEIGYDGWRLDFVRGFWG-----------------------GYVKDYLEAT---EPYFAVGEYWDSLS-----Y- 711 (858)
Q Consensus 664 l~~Wl~e~GIDGFRlDaa~~~~~-----------------------~~i~~i~~~~---~p~~liGE~w~~~~-----~- 711 (858)
+++|+ ++||||||||+|+++.. +|++++.+.. +.+++|||+|.... |
T Consensus 186 ~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~~~~~~y~ 264 (551)
T PRK10933 186 CEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTVGEMSSTSLEHCQRYA 264 (551)
T ss_pred HHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhcccCcEEEEeecCCCHHHHHHhh
Confidence 99999 79999999999987542 4666665532 23789999996421 1
Q ss_pred -ccC---CCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccCCC
Q 003004 712 -TYG---EMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHD 787 (858)
Q Consensus 712 -~~G---~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleNHD 787 (858)
..| .|.++ |......++.+........++. .+..++.. |. ... .. .....+|++|||
T Consensus 265 ~~~~~~~~~~fn---f~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~--~~~--~~------~~~~~~fl~NHD 325 (551)
T PRK10933 265 ALTGSELSMTFN---FHHLKVDYPNGEKWTLAKPDFV---ALKTLFRH---WQ--QGM--HN------VAWNALFWCNHD 325 (551)
T ss_pred cccCCeeeeEec---HHHhhhhhccCCcccccccCHH---HHHHHHHH---HH--Hhh--cc------cCeeccccCCCC
Confidence 111 12222 1222222322110000011111 11111110 00 000 00 023467899999
Q ss_pred CCCCCCCCCCChh----HHHHHHHHHHhcCCceeEechhhHH--------------------------------------
Q 003004 788 TGSTQGHWRFPGG----REMQGYAYILTHPGTPSVFYDHIFS-------------------------------------- 825 (858)
Q Consensus 788 t~R~~s~~~~~~~----~~klA~allltlPGiP~IYYGdE~~-------------------------------------- 825 (858)
++|+.++++.+.. ..+++++++||+||+|+||||||++
T Consensus 326 ~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~ 405 (551)
T PRK10933 326 QPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAIL 405 (551)
T ss_pred cccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhh
Confidence 9999998864422 3577888999999999999999971
Q ss_pred ------------------------------------------------HHHHHHHHHHHHHHhCccccCCCeEEEec
Q 003004 826 ------------------------------------------------HYRQEIEALLSVRKRNKIHCRSRVSIRML 854 (858)
Q Consensus 826 ------------------------------------------------~l~~~~kkLi~lRk~~paL~~G~~~~l~a 854 (858)
.++++||+||+||+++|+|+.|+++.+..
T Consensus 406 ~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~ 482 (551)
T PRK10933 406 ASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLP 482 (551)
T ss_pred hccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEecc
Confidence 16689999999999999999999998764
No 10
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.4e-48 Score=423.01 Aligned_cols=284 Identities=25% Similarity=0.394 Sum_probs=191.5
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
|||+||++||||||+|||++|||+||++++ ++|||++.||++|||+|||++||++||++||++||+||||+|+||++.+
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 789999999999999999999999999998 8999999999999999999999999999999999999999999999998
Q ss_pred ccC-----C-CCCccccCCcCCCCCC--CccCCCCCCCCCCCCC---C---CCCCCCCCCCCCCcHHHHHHHHHHHHHhH
Q 003004 603 YQN-----Q-NGVWNIFGGRLNWDDR--AVVADDPHFQGRGNKS---S---GDNFHAAPNIDHSQDFVRKDIKEWLCWLR 668 (858)
Q Consensus 603 ~~~-----~-~g~w~~~~g~~~w~~~--~~~~~~p~f~~~g~~~---~---~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl 668 (858)
+.. . ... +....+.|.+. ..+.....+.....+. . ..++..+|+||++|++||++|++++++|+
T Consensus 81 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~ 158 (316)
T PF00128_consen 81 HPWFQDSLNYFDN--PYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI 158 (316)
T ss_dssp SHHHHHHHTHTTS--TTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh
Confidence 741 0 000 01111122211 0011111011111110 0 24678999999999999999999999999
Q ss_pred hccCccEEEeCCcccchhHHHHHHHhhc----CCeEEEEEeeCCCCcccCCCCccchHHHHHHHHHHHh-cCCCccccch
Q 003004 669 NEIGYDGWRLDFVRGFWGGYVKDYLEAT----EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDV 743 (858)
Q Consensus 669 ~e~GIDGFRlDaa~~~~~~~i~~i~~~~----~p~~liGE~w~~~~~~~G~mnY~~~~~~~~l~~~l~~-~~~~~~~fD~ 743 (858)
++||||||+|+|+++..++++++.++. +.++++||+|.... ..+..+... .......+++
T Consensus 159 -~~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 223 (316)
T PF00128_consen 159 -EEGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGDN--------------EDLRQYAYDGYFDLDSVFDF 223 (316)
T ss_dssp -HTTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSSH--------------HHHHHHHHHGTTSHSEEEHH
T ss_pred -hceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCCc--------------cccchhhhccccccchhhcc
Confidence 688999999999998888777766543 45999999998631 011111110 0001112222
Q ss_pred hhHHHHHHHh---hcc--chhhcccccCCCCCCcCCCCCceEEcccCCCCCCCCCCCCCChhHHHHHHHHHHhcCCceeE
Q 003004 744 TTKGILHSAL---DRC--EYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSV 818 (858)
Q Consensus 744 ~l~~~l~~~l---~~~--~~~~l~~~~~~~~~l~~~~p~~~vnfleNHDt~R~~s~~~~~~~~~klA~allltlPGiP~I 818 (858)
.......... ... ....+........... ..+...++|++|||+.|+.+.+.....++++|++++||+||+|||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~i 302 (316)
T PF00128_consen 224 PDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSY-PDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMI 302 (316)
T ss_dssp HHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHS-TTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEE
T ss_pred cccccccchhhhhccccchhhhhhhhhhhhhhhh-cccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEE
Confidence 2211111111 000 0000000000000000 012578999999999999887665545899999999999999999
Q ss_pred echhhHH
Q 003004 819 FYDHIFS 825 (858)
Q Consensus 819 YYGdE~~ 825 (858)
|||||++
T Consensus 303 y~G~E~g 309 (316)
T PF00128_consen 303 YYGDEIG 309 (316)
T ss_dssp ETTGGGT
T ss_pred EeChhcc
Confidence 9999983
No 11
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.4e-46 Score=439.80 Aligned_cols=318 Identities=22% Similarity=0.255 Sum_probs=225.8
Q ss_pred CCCcccceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHH
Q 003004 502 PGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (858)
Q Consensus 502 ~~~~~~yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (858)
..+.++||+++++|+- .|+|+||+++|||||+||||+||||||++.+ .+|||++.||++||++||+.++||+|
T Consensus 91 ~~~~viYE~hv~~f~~-----~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~l 165 (542)
T TIGR02402 91 LEEAVIYELHVGTFTP-----EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKAL 165 (542)
T ss_pred ccccEEEEEEhhhcCC-----CCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHH
Confidence 4778999999999972 6899999999999999999999999998876 58999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEeeccccccccCCCCCcc-ccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcH---H
Q 003004 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWN-IFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQD---F 655 (858)
Q Consensus 580 V~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~-~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np---~ 655 (858)
|++||++||+||||+|+||++.++. |. .+. ++|.. .+.++|+ +++|++++ +
T Consensus 166 V~~aH~~Gi~VilD~V~NH~~~~~~-----~~~~~~--------------~y~~~--~~~~~wg----~~~n~~~~~~~~ 220 (542)
T TIGR02402 166 VDAAHGLGLGVILDVVYNHFGPEGN-----YLPRYA--------------PYFTD--RYSTPWG----AAINFDGPGSDE 220 (542)
T ss_pred HHHHHHCCCEEEEEEccCCCCCccc-----cccccC--------------ccccC--CCCCCCC----CccccCCCcHHH
Confidence 9999999999999999999986531 11 011 11211 1112222 47899999 9
Q ss_pred HHHHHHHHHHHhHhccCccEEEeCCcccc--------hhHHHHHHHhhcCC---eEEEEEeeCCCC-cc----cCCCCcc
Q 003004 656 VRKDIKEWLCWLRNEIGYDGWRLDFVRGF--------WGGYVKDYLEATEP---YFAVGEYWDSLS-YT----YGEMDHN 719 (858)
Q Consensus 656 Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~--------~~~~i~~i~~~~~p---~~liGE~w~~~~-~~----~G~mnY~ 719 (858)
||++|++++++|+++|||||||+|+++++ |.++.+.+.+..++ +++|||.|.+.+ +. .|.+.+.
T Consensus 221 vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d 300 (542)
T TIGR02402 221 VRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLD 300 (542)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceE
Confidence 99999999999999999999999999754 44444443333334 899999985422 22 1222221
Q ss_pred ---chHHHHHHHHHHHhcC-CCccccchhhHHHHHHHhhccc-----hhhcc-cccCCCCCCcCCCCCceEEcccCCCC-
Q 003004 720 ---QDAHRQRIIDWINAAS-GTAGAFDVTTKGILHSALDRCE-----YWRLS-DEKGKPPGVVGWWPSRAVTFIENHDT- 788 (858)
Q Consensus 720 ---~~~~~~~l~~~l~~~~-~~~~~fD~~l~~~l~~~l~~~~-----~~~l~-~~~~~~~~l~~~~p~~~vnfleNHDt- 788 (858)
.+.++..+..++.+.. +..+.+.-. ...+...+..+- +.... ...+.+... ..+..+++|++|||+
T Consensus 301 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~vnfl~nHD~~ 377 (542)
T TIGR02402 301 AQWNDDFHHALHVLLTGERQGYYADFGDP-LAALAKTLRDGFVYDGEYSPFRGRPHGRPSGD--LPPHRFVVFIQNHDQI 377 (542)
T ss_pred EEECchHHHHHHHHhcCCcceeecccCcC-HHHHHHHHHHhcccCccccccccccCCCCCCC--CCHHHEEEEccCcccc
Confidence 1247788888875432 111111101 112223222110 00000 000111110 124578999999997
Q ss_pred ------CCCCCCCCCChhHHHHHHHHHHhcCCceeEechhhHH-------------------------------------
Q 003004 789 ------GSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIFS------------------------------------- 825 (858)
Q Consensus 789 ------~R~~s~~~~~~~~~klA~allltlPGiP~IYYGdE~~------------------------------------- 825 (858)
.|+.+.+ +.++.++|++++||+||+||||||||++
T Consensus 378 gn~~~~~Rl~~~~--~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~ 455 (542)
T TIGR02402 378 GNRALGERLSQLL--SPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPED 455 (542)
T ss_pred cccchhhhhhhcC--CHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhccccccc
Confidence 6777654 3578999999999999999999999971
Q ss_pred --------------------------HHHHHHHHHHHHHHhCccccCCCeEEEec
Q 003004 826 --------------------------HYRQEIEALLSVRKRNKIHCRSRVSIRML 854 (858)
Q Consensus 826 --------------------------~l~~~~kkLi~lRk~~paL~~G~~~~l~a 854 (858)
+++++||+||+|||++++|+.|..+.+..
T Consensus 456 ~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~ 510 (542)
T TIGR02402 456 VPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEV 510 (542)
T ss_pred CCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCccccee
Confidence 16789999999999999999887655543
No 12
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=7e-47 Score=451.11 Aligned_cols=318 Identities=20% Similarity=0.260 Sum_probs=228.2
Q ss_pred CCCCcccceeeeeeeccccCC----CCCcHHHHHHH--HHHHHhCCCCEEEeCCCCCCC-----------CCCCCCCccC
Q 003004 501 SPGTGTGFEILCQGFNWESHK----SGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDL 563 (858)
Q Consensus 501 ~~~~~~~yei~~~~F~Wd~~~----~GGdl~GI~ek--LdYLk~LGVnaI~L~PIfes~-----------s~hGYd~~Dy 563 (858)
...+.++||+++++|+-...+ ..|+|+||+++ |||||+||||+|||+|||++. .+|||++.||
T Consensus 152 ~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y 231 (688)
T TIGR02100 152 PWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF 231 (688)
T ss_pred CccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc
Confidence 346778888888888742111 24899999985 999999999999999999875 3699999999
Q ss_pred CCcCCCC---CCHHHHHHHHHHHHHcCCEEEEEEeeccccccccC-CCCCccccCCcCCCCCCCccCCCCCCCCC--CCC
Q 003004 564 YNLSSRY---GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN-QNGVWNIFGGRLNWDDRAVVADDPHFQGR--GNK 637 (858)
Q Consensus 564 ~~IDp~l---Gt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~-~~g~w~~~~g~~~w~~~~~~~~~p~f~~~--g~~ 637 (858)
++|||+| |+.+|||+||++||++||+||||+|+|||+..+.. +...|...... .|. .+... +.+
T Consensus 232 ~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~-~yy---------~~~~~~~~~~ 301 (688)
T TIGR02100 232 FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNA-SYY---------RLQPDDKRYY 301 (688)
T ss_pred cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCC-cce---------EecCCCCcee
Confidence 9999999 67899999999999999999999999999976531 11111100000 010 00000 112
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccch---------hHHHHHHHhh-cCC-eEEEEEee
Q 003004 638 SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW---------GGYVKDYLEA-TEP-YFAVGEYW 706 (858)
Q Consensus 638 ~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~---------~~~i~~i~~~-~~p-~~liGE~w 706 (858)
..+ ....+++|+++|+||++|++++++|++++||||||+|+|.++. ..+++++.+. ..+ +++|||.|
T Consensus 302 ~~~--~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W 379 (688)
T TIGR02100 302 IND--TGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPW 379 (688)
T ss_pred cCC--CCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeee
Confidence 122 2334789999999999999999999999999999999998653 4677776653 233 99999999
Q ss_pred CCCC--ccc-------CCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCC
Q 003004 707 DSLS--YTY-------GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS 777 (858)
Q Consensus 707 ~~~~--~~~-------G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~ 777 (858)
+..+ +.. +.||+ .||+.|++|+.+..+... .+...+.+.. +... .....|.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~Nd---~frd~ir~f~~g~~~~~~--------~~~~~l~gs~-----~~~~----~~~~~~~ 439 (688)
T TIGR02100 380 DIGPGGYQVGNFPPGWAEWND---RYRDDMRRFWRGDAGMIG--------ELANRLTGSS-----DLFE----HNGRRPW 439 (688)
T ss_pred cCCCCcccccCCCCceEEecH---HHHHHHHHHHcCCCCcHH--------HHHHHHhCCH-----hhcc----ccCCCcC
Confidence 8642 322 22443 589999999976543222 1222221110 0000 0012356
Q ss_pred ceEEcccCCCCCCCCCCC---------CC----------------------C-------hhHHHHHHHHHHhcCCceeEe
Q 003004 778 RAVTFIENHDTGSTQGHW---------RF----------------------P-------GGREMQGYAYILTHPGTPSVF 819 (858)
Q Consensus 778 ~~vnfleNHDt~R~~s~~---------~~----------------------~-------~~~~klA~allltlPGiP~IY 819 (858)
.++|||++||+.++...+ ++ + .++.+++++++||+||+||||
T Consensus 440 ~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~ 519 (688)
T TIGR02100 440 ASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLL 519 (688)
T ss_pred EEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceee
Confidence 789999999998754421 00 0 246899999999999999999
Q ss_pred chhhH----------------------------HHHHHHHHHHHHHHHhCccccCCCeE
Q 003004 820 YDHIF----------------------------SHYRQEIEALLSVRKRNKIHCRSRVS 850 (858)
Q Consensus 820 YGdE~----------------------------~~l~~~~kkLi~lRk~~paL~~G~~~ 850 (858)
||||+ .++++++|+||+|||+||+|+.+.+.
T Consensus 520 ~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~~ 578 (688)
T TIGR02100 520 AGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERFF 578 (688)
T ss_pred ecHhhccCCCCCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhcccccc
Confidence 99999 37999999999999999999987654
No 13
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.1e-46 Score=468.85 Aligned_cols=445 Identities=18% Similarity=0.197 Sum_probs=285.8
Q ss_pred cccccccCcccCCCCcceeEEEe-cCccceeEEEEEcCCccccccCCC-ceeeccCCCCCCCCcccccccccCCCccccc
Q 003004 345 NKALRTLLQPKEGGKGCSRLFTV-DEEFAGFLFVLKLNENTWLKCMEN-DFYIPLTSSSCLPAESVQEMLIPGKAEEATQ 422 (858)
Q Consensus 345 ~~a~~Tpf~~~~~~~~~~~~~~l-~~~~~g~~fVl~~~~~~W~k~~g~-df~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (858)
.+-+..|||+...+. -+.|.| ...=..+.+||..+ . ++. ...++|..... ..|.+ ...+..
T Consensus 9 ~~g~~~plGA~~~~~--gv~F~v~ap~A~~V~L~lf~~-~-----~~~~~~~~~l~~~~g-------~vW~~--~i~~~~ 71 (1221)
T PRK14510 9 SPGFREPLGAVPDGG--GVNLALFSGAAERVEFCLFDL-W-----GVREEARIKLPGRTG-------DVWHG--FIVGVG 71 (1221)
T ss_pred CCCCCCCCceEEECC--eEEEEEECCCCCEEEEEEEEC-C-----CCCeeEEEECCCCcC-------CEEEE--EEccCC
Confidence 345677899988765 467888 55556677787754 1 111 13466643322 12322 111111
Q ss_pred cccccchhhhHHHHhhhcccCcccchhhhccchhhhhhhhhHhhhhcchh-hccccccccccccccccc---cc--cCC-
Q 003004 423 EVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAEA-YSIFRTTAPTFFEEAAVE---LE--ESK- 495 (858)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~tv~~~~~~~pav~-YqIFp~~~DRF~n~g~~~---~~--~~~- 495 (858)
.+ ..|-+.+... .....+.......+++++|+.....|..+ =.||+ +||.+ +..+ +. .++
T Consensus 72 -~g-~~Ygyrv~g~-------~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~---~~~~~-~~~~~~d~~~~~pk~ 138 (1221)
T PRK14510 72 -PG-ARYGNRQEGP-------GGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFD---DRFFN-GDEDLTDSAVLVPKV 138 (1221)
T ss_pred -CC-cEEEEEeccC-------CCcccccccCCCeEeeCCCCceEeCCcccCccccc---ccccC-CCcccccCcccCccc
Confidence 11 1344444310 00111222233456777777665544110 01899 99987 3321 11 111
Q ss_pred -----------CCCCCCCCCcccceeeeeeeccccCCCCCcHHHHHHHHH------HHHhCCCCEEEeCCCCCCCC----
Q 003004 496 -----------PPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKAT------ELSSLGFSVIWLPPPTESVS---- 554 (858)
Q Consensus 496 -----------p~~~~~~~~~~~yei~~~~F~Wd~~~~GGdl~GI~ekLd------YLk~LGVnaI~L~PIfes~s---- 554 (858)
+.......+.++||+++++|+...+.-||+++|+.++|+ |||+||||+|||+|||++.+
T Consensus 139 vv~~~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~ 218 (1221)
T PRK14510 139 VVPTPFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHL 218 (1221)
T ss_pred eeecccccCCCCCCCCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCccccc
Confidence 112233456789999999998644444666666666666 99999999999999998753
Q ss_pred -------CCCCCCccCCCcCCCCC--CHHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCcc
Q 003004 555 -------PEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVV 625 (858)
Q Consensus 555 -------~hGYd~~Dy~~IDp~lG--t~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~ 625 (858)
||||++.||+++||+|| +.+|||+||++||++||+||||+|+|||+.++... ..+ .+.+ ..
T Consensus 219 ~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~-p~~-~~~~---~d----- 288 (1221)
T PRK14510 219 PQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG-PTL-SAYG---SD----- 288 (1221)
T ss_pred ccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC-Ccc-cccC---CC-----
Confidence 57899999999999999 99999999999999999999999999999764210 000 0000 00
Q ss_pred CCCCCCC----CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccc---hhHHHHH---HHhh
Q 003004 626 ADDPHFQ----GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF---WGGYVKD---YLEA 695 (858)
Q Consensus 626 ~~~p~f~----~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~---~~~~i~~---i~~~ 695 (858)
+.++|. ..+.+.+++++..++++ +++.|+++|++++++|++ +||||||+|+|.++ ..+|++. .+++
T Consensus 289 -~~~yy~~~~~~~~~y~~~~G~gn~~n~--~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~a 364 (1221)
T PRK14510 289 -NSPYYRLEPGNPKEYENWWGCGNLPNL--ERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKA 364 (1221)
T ss_pred -CCCceEecCCCCCcccCCCCCCCcccc--CCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHH
Confidence 011111 11234455666666555 499999999999999997 99999999999877 4444333 3344
Q ss_pred cCC-eE-----EEEEeeCCCC--cc-------cCCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhh
Q 003004 696 TEP-YF-----AVGEYWDSLS--YT-------YGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWR 760 (858)
Q Consensus 696 ~~p-~~-----liGE~w~~~~--~~-------~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~ 760 (858)
..+ .+ +|||.|+..+ +. .+.|||. |++.+.+|+.+..+... .+...+.+.
T Consensus 365 i~~d~~l~~~~ligE~Wd~~~~~~~~g~f~~~~~~~N~~---frd~vr~f~~g~~~~~~--------~~a~~l~gs---- 429 (1221)
T PRK14510 365 MDQDPVLRRLKMIAEVWDDGLGGYQYGKFPQYWGEWNDP---LRDIMRRFWLGDIGMAG--------ELATRLAGS---- 429 (1221)
T ss_pred hCCCcCcccCcEEEecccCCCCccccCCCCcceeeeccH---HHHHHHHHhcCCCchHH--------HHHHHHhCc----
Confidence 333 44 5999998632 22 2456665 79999999875432111 112212110
Q ss_pred cccccCCCCCCcCCCCCceEEcccCCCCCCCCCCCCC--------------------------------------ChhHH
Q 003004 761 LSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRF--------------------------------------PGGRE 802 (858)
Q Consensus 761 l~~~~~~~~~l~~~~p~~~vnfleNHDt~R~~s~~~~--------------------------------------~~~~~ 802 (858)
.+. ++.. ...+..++|||+|||+.|+.+.+.+ ..++.
T Consensus 430 -~d~--~~~~--~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~ 504 (1221)
T PRK14510 430 -ADI--FPHR--RRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRL 504 (1221)
T ss_pred -Hhh--cCcc--CCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHH
Confidence 000 0100 1234678999999999997654321 02468
Q ss_pred HHHHHHHHhcCCceeEechhhH--------------------------HHHHHHHHHHHHHHHhCccccCCCeEEEe
Q 003004 803 MQGYAYILTHPGTPSVFYDHIF--------------------------SHYRQEIEALLSVRKRNKIHCRSRVSIRM 853 (858)
Q Consensus 803 klA~allltlPGiP~IYYGdE~--------------------------~~l~~~~kkLi~lRk~~paL~~G~~~~l~ 853 (858)
++|++++||+||+||||||||+ .+++++||+||+|||+||+|+.|.+..+.
T Consensus 505 r~a~~~l~~s~GiP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~ 581 (1221)
T PRK14510 505 RLLLLTLMSFPGVPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSGT 581 (1221)
T ss_pred HHHHHHHHhCCCCcEEecchhcccccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccCc
Confidence 8999999999999999999998 26999999999999999999999987654
No 14
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=2.1e-46 Score=444.84 Aligned_cols=320 Identities=19% Similarity=0.279 Sum_probs=213.8
Q ss_pred CCcccceeeeeeeccccCC---CCCcHH-----------HHHHHHHHHHhCCCCEEEeCCCCCCCC----------CCCC
Q 003004 503 GTGTGFEILCQGFNWESHK---SGRWYM-----------ELKEKATELSSLGFSVIWLPPPTESVS----------PEGY 558 (858)
Q Consensus 503 ~~~~~yei~~~~F~Wd~~~---~GGdl~-----------GI~ekLdYLk~LGVnaI~L~PIfes~s----------~hGY 558 (858)
.+.++||+++++|+-+... .-|+|. ||+++|||||+||||+||||||++..+ +|||
T Consensus 126 ~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY 205 (605)
T TIGR02104 126 EDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGY 205 (605)
T ss_pred hHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCC
Confidence 5578899999888743221 014444 455669999999999999999999764 5999
Q ss_pred CCccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcC-CCCCCCccCCCC
Q 003004 559 MPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRL-NWDDRAVVADDP 629 (858)
Q Consensus 559 d~~Dy~~IDp~lGt--------~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~-~w~~~~~~~~~p 629 (858)
++.||++++++||+ .+|||+||++||++||+||||+|+||++.... .. |.+.. .|...
T Consensus 206 ~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~---~~---f~~~~~~~~~~------- 272 (605)
T TIGR02104 206 DPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE---SP---FEKTVPGYYYR------- 272 (605)
T ss_pred CCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC---Cc---ccCCCCCeeEE-------
Confidence 99999999999987 48999999999999999999999999985321 11 11100 01000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccchhHHHHHHHh---hcCC-eEEEEEe
Q 003004 630 HFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEP-YFAVGEY 705 (858)
Q Consensus 630 ~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~~~~i~~i~~---~~~p-~~liGE~ 705 (858)
....+.+..++++ ..++|+++|+||++|++++++|++++||||||+|++.++..++++++.+ ...| ++++||.
T Consensus 273 -~~~~g~~~~~~g~--~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~ 349 (605)
T TIGR02104 273 -YNEDGTLSNGTGV--GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEG 349 (605)
T ss_pred -ECCCCCccCCCcc--cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 0011122222222 2478999999999999999999999999999999998776666555443 3344 9999999
Q ss_pred eCCCCcc----------------cCCCCccchHHHHHHHHHHHhcCCCcccc---chhhHHHHHHHhhccchhhcccccC
Q 003004 706 WDSLSYT----------------YGEMDHNQDAHRQRIIDWINAASGTAGAF---DVTTKGILHSALDRCEYWRLSDEKG 766 (858)
Q Consensus 706 w~~~~~~----------------~G~mnY~~~~~~~~l~~~l~~~~~~~~~f---D~~l~~~l~~~l~~~~~~~l~~~~~ 766 (858)
|+....+ .+.+|+. +++.|..++-+.. ...| +......+...+.....+ . .
T Consensus 350 w~~~~~~~~~~~~~~~~~~~~~~~~~~n~~---~rd~i~~~~~~~~--~~~f~~g~~~~~~~l~~~l~~~~~~--~---~ 419 (605)
T TIGR02104 350 WDLGTPLPPEQKATKANAYQMPGIAFFNDE---FRDALKGSVFHLK--KKGFVSGNPGTEETVKKGILGSIEL--D---A 419 (605)
T ss_pred CCCCCCcchhhhhhhhccCCCCceEEECCc---chhhhcCCccccc--cCceecCCCCcHHHHHhheeCChhh--c---c
Confidence 9864211 0122222 4555543221100 0000 000001111111100000 0 0
Q ss_pred CCCCCcCCCCCceEEcccCCCCCCCCCCCCC---------ChhHHHHHHHHHHhcCCceeEechhhH-------------
Q 003004 767 KPPGVVGWWPSRAVTFIENHDTGSTQGHWRF---------PGGREMQGYAYILTHPGTPSVFYDHIF------------- 824 (858)
Q Consensus 767 ~~~~l~~~~p~~~vnfleNHDt~R~~s~~~~---------~~~~~klA~allltlPGiP~IYYGdE~------------- 824 (858)
.......|..++||++|||+.|+...+.. ..++.++|++++||+||+||||||||+
T Consensus 420 --~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~ 497 (605)
T TIGR02104 420 --VKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNS 497 (605)
T ss_pred --cccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccC
Confidence 00011245678999999999987544221 135789999999999999999999998
Q ss_pred ---------------HHHHHHHHHHHHHHHhCccccCCCeE
Q 003004 825 ---------------SHYRQEIEALLSVRKRNKIHCRSRVS 850 (858)
Q Consensus 825 ---------------~~l~~~~kkLi~lRk~~paL~~G~~~ 850 (858)
.+++++||+||+|||++|+|+.|++.
T Consensus 498 ~d~~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~ 538 (605)
T TIGR02104 498 PDSINQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAE 538 (605)
T ss_pred CCcccccCccccccchHHHHHHHHHHHHHhhCccccCCChh
Confidence 25899999999999999999998763
No 15
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.3e-45 Score=436.95 Aligned_cols=314 Identities=17% Similarity=0.204 Sum_probs=219.3
Q ss_pred CCcccceeeeeeeccccCCCCCcHHHHHHHH-HHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHH
Q 003004 503 GTGTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (858)
Q Consensus 503 ~~~~~yei~~~~F~Wd~~~~GGdl~GI~ekL-dYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (858)
...++||+++++|.-...+.-|+|+||+++| ||||+||||+||||||++++ .+|||++.||++|||+|||++|||+|
T Consensus 146 ~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~l 225 (633)
T PRK12313 146 RPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYL 225 (633)
T ss_pred CCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHH
Confidence 4568999999998743222127899999995 99999999999999999987 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 003004 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (858)
Q Consensus 580 V~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~ 659 (858)
|++||++||+||||+|+||++.++.. +..+++...|... + ....+...| +.+++|+.||+||++
T Consensus 226 v~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~~~~~~~~-----~----~~~~~~~~w---~~~~~n~~~~~vr~~ 289 (633)
T PRK12313 226 VDALHQNGIGVILDWVPGHFPKDDDG----LAYFDGTPLYEYQ-----D----PRRAENPDW---GALNFDLGKNEVRSF 289 (633)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCccc----ccccCCCcceeec-----C----CCCCcCCCC---CCcccCCCCHHHHHH
Confidence 99999999999999999999976421 1112221111000 0 001111112 246899999999999
Q ss_pred HHHHHHHhHhccCccEEEeCCcccch-----------------------hHHHHHH---HhhcCC-eEEEEEeeCCCC--
Q 003004 660 IKEWLCWLRNEIGYDGWRLDFVRGFW-----------------------GGYVKDY---LEATEP-YFAVGEYWDSLS-- 710 (858)
Q Consensus 660 i~~~l~~Wl~e~GIDGFRlDaa~~~~-----------------------~~~i~~i---~~~~~p-~~liGE~w~~~~-- 710 (858)
|++++++|+++|||||||+|++.++. .+|++++ ++..+| +++|||.+...+
T Consensus 290 l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~ 369 (633)
T PRK12313 290 LISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKV 369 (633)
T ss_pred HHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccc
Confidence 99999999999999999999885331 2344443 333445 999999986532
Q ss_pred ---cccCCCCccc---hHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEccc
Q 003004 711 ---YTYGEMDHNQ---DAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 784 (858)
Q Consensus 711 ---~~~G~mnY~~---~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfle 784 (858)
...|.+++.. ..+...+..|+..... ...++.. .+...+ .. .. ....++++
T Consensus 370 ~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~--------~~------~~-----~e~~~l~~ 426 (633)
T PRK12313 370 TGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPI-YRKYHHN---LLTFSF--------MY------AF-----SENFVLPF 426 (633)
T ss_pred cccccCCCCCcCceeCcHHHHHHHHHhhhCcc-ccccccc---cchHHH--------hh------hh-----hcccccCC
Confidence 2244444422 1345566666643221 1111100 000000 00 00 11235779
Q ss_pred CCCC-----CCCCCCCCCCh----hHHHHHHHHHHhcCCceeEechhhHH----------------------HHHHHHHH
Q 003004 785 NHDT-----GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS----------------------HYRQEIEA 833 (858)
Q Consensus 785 NHDt-----~R~~s~~~~~~----~~~klA~allltlPGiP~IYYGdE~~----------------------~l~~~~kk 833 (858)
|||+ .|+.+.+.++. ++++++++++||+||+||||||+|++ .++++||+
T Consensus 427 sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~ 506 (633)
T PRK12313 427 SHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSD 506 (633)
T ss_pred CCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHH
Confidence 9999 46666554443 67899999999999999999999982 58999999
Q ss_pred HHHHHHhCccccC-----CCeEEEecC
Q 003004 834 LLSVRKRNKIHCR-----SRVSIRMLT 855 (858)
Q Consensus 834 Li~lRk~~paL~~-----G~~~~l~a~ 855 (858)
||+||+++|+|+. |.++++..+
T Consensus 507 Li~LRr~~paL~~~d~~~~~~~~l~~~ 533 (633)
T PRK12313 507 LNQLYKDEPALWELDFSPDGFEWIDAD 533 (633)
T ss_pred HHHHHHhChHhhcccCCCCCcEEEECc
Confidence 9999999999974 557888754
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=7.4e-46 Score=439.37 Aligned_cols=322 Identities=18% Similarity=0.231 Sum_probs=224.3
Q ss_pred CCCCCcccceeeeeeecc-ccCCC---CCcHHHHHH--HHHHHHhCCCCEEEeCCCCCCC-----------CCCCCCCcc
Q 003004 500 ISPGTGTGFEILCQGFNW-ESHKS---GRWYMELKE--KATELSSLGFSVIWLPPPTESV-----------SPEGYMPRD 562 (858)
Q Consensus 500 ~~~~~~~~yei~~~~F~W-d~~~~---GGdl~GI~e--kLdYLk~LGVnaI~L~PIfes~-----------s~hGYd~~D 562 (858)
....+.++||+++++|+- +.... -|+|.|+++ +|||||+||||+|||+||+++. .+|||++.|
T Consensus 146 ~~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~ 225 (658)
T PRK03705 146 TPWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLA 225 (658)
T ss_pred CCccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCccccc
Confidence 345788999999999983 21111 278999997 5999999999999999999864 469999999
Q ss_pred CCCcCCCCCCH-----HHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCC
Q 003004 563 LYNLSSRYGNI-----DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNK 637 (858)
Q Consensus 563 y~~IDp~lGt~-----edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~ 637 (858)
|+++||+||+. +|||+||++||++||+||||+|+|||+.... .+.+..+.+. .. ....++...+.+
T Consensus 226 yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~---d~----~~yy~~~~~g~~ 296 (658)
T PRK03705 226 MFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDL--DGPTLSLRGI---DN----RSYYWIREDGDY 296 (658)
T ss_pred ccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCC--CCcchhcccC---CC----ccceEECCCCCc
Confidence 99999999995 7999999999999999999999999996431 1111111110 00 000011112222
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccch------h--HHHHHHHhh-c-CCeEEEEEeeC
Q 003004 638 SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW------G--GYVKDYLEA-T-EPYFAVGEYWD 707 (858)
Q Consensus 638 ~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~------~--~~i~~i~~~-~-~p~~liGE~w~ 707 (858)
..+.+ ..++||+++|+||++|++++++|+++|||||||+|+|.++. . .+++++... . ..++++||.|+
T Consensus 297 ~~~~g--~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd 374 (658)
T PRK03705 297 HNWTG--CGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWD 374 (658)
T ss_pred CCCCC--ccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEeccc
Confidence 22322 34789999999999999999999999999999999998653 2 244554431 2 34999999998
Q ss_pred CC--CcccCCCC----ccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEE
Q 003004 708 SL--SYTYGEMD----HNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVT 781 (858)
Q Consensus 708 ~~--~~~~G~mn----Y~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vn 781 (858)
.. .+..|.+. ...+.||+.|..|+.+..+. .-++ ...+.+.. .+. . ..+..|...+|
T Consensus 375 ~~~~~~~~g~~~~~~~~~Nd~fRd~ir~f~~~~~~~--~~~~------~~~l~gs~--~~~-----~--~~~~~p~~siN 437 (658)
T PRK03705 375 IGPGGYQVGNFPPPFAEWNDHFRDAARRFWLHGDLP--LGEF------AGRFAASS--DVF-----K--RNGRLPSASIN 437 (658)
T ss_pred CCCChhhhcCCCcceEEEchHHHHHHHHHHccCCCc--HHHH------HHHHhcch--hhc-----c--ccCCCCCeEEE
Confidence 63 23222211 11235899999998643321 1111 11111100 000 0 01124578999
Q ss_pred cccCCCCCCCCCCCCC--------------------------------------ChhHHHHHHHHHHhcCCceeEechhh
Q 003004 782 FIENHDTGSTQGHWRF--------------------------------------PGGREMQGYAYILTHPGTPSVFYDHI 823 (858)
Q Consensus 782 fleNHDt~R~~s~~~~--------------------------------------~~~~~klA~allltlPGiP~IYYGdE 823 (858)
||++||+.++...+.+ ..++.++|+++||+++|+||||||||
T Consensus 438 yv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE 517 (658)
T PRK03705 438 LVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDE 517 (658)
T ss_pred EEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHH
Confidence 9999999766442100 01457889999999999999999999
Q ss_pred H--------------------------HHHHHHHHHHHHHHHhCccccCCCe
Q 003004 824 F--------------------------SHYRQEIEALLSVRKRNKIHCRSRV 849 (858)
Q Consensus 824 ~--------------------------~~l~~~~kkLi~lRk~~paL~~G~~ 849 (858)
+ .++++++|+||+|||+||+|+..++
T Consensus 518 ~grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~ 569 (658)
T PRK03705 518 HGHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRW 569 (658)
T ss_pred hccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhccccc
Confidence 9 2699999999999999999986554
No 17
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.3e-44 Score=429.70 Aligned_cols=306 Identities=18% Similarity=0.225 Sum_probs=212.4
Q ss_pred CcccceeeeeeeccccCCCCCcHHHHHHHH-HHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHH
Q 003004 504 TGTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (858)
Q Consensus 504 ~~~~yei~~~~F~Wd~~~~GGdl~GI~ekL-dYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (858)
..++||+++++|. .+|++++|+++| ||||+||||+||||||++++ .+|||++.||++|+++|||.+|||+||
T Consensus 138 ~~~iYe~hv~~~~-----~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV 212 (613)
T TIGR01515 138 PVSIYELHLGSWR-----HGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFV 212 (613)
T ss_pred CceEEEEehhhcc-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHH
Confidence 4579999999996 248999999997 99999999999999999986 579999999999999999999999999
Q ss_pred HHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 003004 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (858)
Q Consensus 581 ~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i 660 (858)
++||++||+||||+|+||++.++.. +..+++...|... .+ ...+. ..| +.+++|+++|+||++|
T Consensus 213 ~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~~-----~~----~~~~~--~~w-~~~~~~~~~~~Vr~~l 276 (613)
T TIGR01515 213 DACHQAGIGVILDWVPGHFPKDDHG----LAEFDGTPLYEHK-----DP----RDGEH--WDW-GTLIFDYGRPEVRNFL 276 (613)
T ss_pred HHHHHCCCEEEEEecccCcCCccch----hhccCCCcceecc-----CC----ccCcC--CCC-CCceecCCCHHHHHHH
Confidence 9999999999999999999976421 1112221111000 00 00111 112 3578999999999999
Q ss_pred HHHHHHhHhccCccEEEeCCccc----------------------------chhHHHHHHHhhcCC-eEEEEEeeCCCC-
Q 003004 661 KEWLCWLRNEIGYDGWRLDFVRG----------------------------FWGGYVKDYLEATEP-YFAVGEYWDSLS- 710 (858)
Q Consensus 661 ~~~l~~Wl~e~GIDGFRlDaa~~----------------------------~~~~~i~~i~~~~~p-~~liGE~w~~~~- 710 (858)
++++++|+++|||||||+|++.+ ||+++.+. +++.+| +++|||.+.+.+
T Consensus 277 ~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~-v~~~~p~~~liaE~~~~~~~ 355 (613)
T TIGR01515 277 VANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQT-VYEAFPGVVTIAEESTEWPG 355 (613)
T ss_pred HHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHH-HHHHCCCeEEEEEeCCCCcc
Confidence 99999999999999999998743 44444333 333344 999999875432
Q ss_pred ----cccCCCCcc--c-hHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcc
Q 003004 711 ----YTYGEMDHN--Q-DAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 783 (858)
Q Consensus 711 ----~~~G~mnY~--~-~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfl 783 (858)
...|.+.+. . ..+...+..++.... ....++... ..+ .+... . .....++
T Consensus 356 ~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~-~~~~~------~-----~e~~~~~ 412 (613)
T TIGR01515 356 VTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDP-VERQYHHQL----------ITF-SMLYA------F-----SENFVLP 412 (613)
T ss_pred ccccccCCcCCcCeeeCchHHHHHHHHHhhCh-hhHhhcccc----------ccH-HHHHH------h-----hhccccC
Confidence 122322221 1 124455555553211 001110000 000 00000 0 0123367
Q ss_pred cCCCC-----CCCCCCCCCC----hhHHHHHHHHHHhcCCceeEechhhH----------------------HHHHHHHH
Q 003004 784 ENHDT-----GSTQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIF----------------------SHYRQEIE 832 (858)
Q Consensus 784 eNHDt-----~R~~s~~~~~----~~~~klA~allltlPGiP~IYYGdE~----------------------~~l~~~~k 832 (858)
+|||+ .|+...+.++ .++++++++++||+||+||||||+|+ ..++++||
T Consensus 413 ~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k 492 (613)
T TIGR01515 413 LSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVR 492 (613)
T ss_pred CCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHH
Confidence 99998 4555555443 25789999999999999999999998 25889999
Q ss_pred HHHHHHHhCccccCCC-----eEEEec
Q 003004 833 ALLSVRKRNKIHCRSR-----VSIRML 854 (858)
Q Consensus 833 kLi~lRk~~paL~~G~-----~~~l~a 854 (858)
+|++||+++|+|+.|+ ++++..
T Consensus 493 ~L~~Lr~~~paL~~~~~~~~~~~~~~~ 519 (613)
T TIGR01515 493 DLNRTYQKSKALYEHDFDPQGFEWIDV 519 (613)
T ss_pred HHHHHHhhCHHhhccCCCCCceEEEEc
Confidence 9999999999997544 555654
No 18
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3e-43 Score=425.07 Aligned_cols=313 Identities=17% Similarity=0.234 Sum_probs=211.4
Q ss_pred CCcccceeeeeeeccccCCCC-CcHHHHHHHH-HHHHhCCCCEEEeCCCCCCCC--CCCCCCccCCCcCCCCCCHHHHHH
Q 003004 503 GTGTGFEILCQGFNWESHKSG-RWYMELKEKA-TELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDELKD 578 (858)
Q Consensus 503 ~~~~~yei~~~~F~Wd~~~~G-Gdl~GI~ekL-dYLk~LGVnaI~L~PIfes~s--~hGYd~~Dy~~IDp~lGt~edfk~ 578 (858)
...++||+++++|.-+.++++ |+|+||+++| ||||+||||+||||||++++. +|||++.||++|||+|||++|||+
T Consensus 240 ~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~ 319 (726)
T PRK05402 240 APISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRY 319 (726)
T ss_pred CCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHH
Confidence 457899999999984423222 7999999996 999999999999999999864 799999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 003004 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 658 (858)
Q Consensus 579 LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~ 658 (858)
||++||++||+||||+|+||++.++.. +..+++...|... ++ ..+.+. .| +..++|+.|++||+
T Consensus 320 lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~~-----~~---~~~~~~---~w-~~~~~n~~~~~v~~ 383 (726)
T PRK05402 320 FVDACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEHA-----DP---REGEHP---DW-GTLIFNYGRNEVRN 383 (726)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceecc-----CC---cCCccC---CC-CCccccCCCHHHHH
Confidence 999999999999999999999876421 1112221111100 00 001111 11 12378999999999
Q ss_pred HHHHHHHHhHhccCccEEEeCCcccch------------------------hHHHHHH---HhhcCC-eEEEEEeeCCCC
Q 003004 659 DIKEWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDY---LEATEP-YFAVGEYWDSLS 710 (858)
Q Consensus 659 ~i~~~l~~Wl~e~GIDGFRlDaa~~~~------------------------~~~i~~i---~~~~~p-~~liGE~w~~~~ 710 (858)
+|++++++|++++||||||+|++.++. .+|++++ ++..+| +++|||.+...+
T Consensus 384 ~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~ 463 (726)
T PRK05402 384 FLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWP 463 (726)
T ss_pred HHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 999999999999999999999874321 2344443 333445 999999765422
Q ss_pred c-----ccCC--CCccch-HHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEc
Q 003004 711 Y-----TYGE--MDHNQD-AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTF 782 (858)
Q Consensus 711 ~-----~~G~--mnY~~~-~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnf 782 (858)
. ..|. ++|..+ .+...+++|+..... ...+... .+... +.. .. ...+++
T Consensus 464 ~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~-~~~~~~~---~~~~~--------~~~----------~~-~e~~~l 520 (726)
T PRK05402 464 GVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPI-YRKYHHN---ELTFS--------LLY----------AY-SENFVL 520 (726)
T ss_pred CccccccCCCCCCCceecCCcchHHHHHHhhCcc-ccccccc---chhHH--------HhH----------hh-hccccC
Confidence 1 1222 222111 133444555532110 0000000 00000 000 00 112457
Q ss_pred ccCCCCCC-----CCCCCCCC----hhHHHHHHHHHHhcCCceeEechhhH----------------------HHHHHHH
Q 003004 783 IENHDTGS-----TQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIF----------------------SHYRQEI 831 (858)
Q Consensus 783 leNHDt~R-----~~s~~~~~----~~~~klA~allltlPGiP~IYYGdE~----------------------~~l~~~~ 831 (858)
++|||+.+ +...+.++ .++++++++++||+||+||||||+|+ ..++++|
T Consensus 521 ~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~ 600 (726)
T PRK05402 521 PLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLV 600 (726)
T ss_pred CCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHH
Confidence 89999963 44444333 25789999999999999999999998 2589999
Q ss_pred HHHHHHHHhCccccCC-----CeEEEec
Q 003004 832 EALLSVRKRNKIHCRS-----RVSIRML 854 (858)
Q Consensus 832 kkLi~lRk~~paL~~G-----~~~~l~a 854 (858)
|+|++||+++|+|+.| .++++..
T Consensus 601 k~Li~Lr~~~~aL~~g~~~~~~~~~~~~ 628 (726)
T PRK05402 601 RDLNHLYRAEPALHELDFDPEGFEWIDA 628 (726)
T ss_pred HHHHHHHHhChhhhccccCcCCeeEEec
Confidence 9999999999999765 4566654
No 19
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.2e-41 Score=400.64 Aligned_cols=312 Identities=18% Similarity=0.192 Sum_probs=213.5
Q ss_pred CCcccceeeeeeeccccCCCC--CcHHHHHHHH-HHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHH
Q 003004 503 GTGTGFEILCQGFNWESHKSG--RWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELK 577 (858)
Q Consensus 503 ~~~~~yei~~~~F~Wd~~~~G--Gdl~GI~ekL-dYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk 577 (858)
...++||+++++|... .+| ++|++++++| +|||+||||+|+||||++.+ .+|||++.|||+++++||+.+|||
T Consensus 143 ~~~~IYE~Hvg~f~~~--~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~ 220 (639)
T PRK14706 143 QPISIYEVHVGSWARR--DDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFK 220 (639)
T ss_pred CCcEEEEEehhhcccC--CCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHH
Confidence 3478999999999743 234 5899999997 89999999999999999975 479999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHH
Q 003004 578 DVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVR 657 (858)
Q Consensus 578 ~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr 657 (858)
+||++||++||+||||+|+||++.++. + +..++|...|... + ....+. ..|.+ ..+|+.+++||
T Consensus 221 ~lv~~~H~~gi~VilD~v~nH~~~~~~---~-l~~~dg~~~y~~~-----~----~~~g~~--~~w~~-~~~~~~~~eVr 284 (639)
T PRK14706 221 YLVNHLHGLGIGVILDWVPGHFPTDES---G-LAHFDGGPLYEYA-----D----PRKGYH--YDWNT-YIFDYGRNEVV 284 (639)
T ss_pred HHHHHHHHCCCEEEEEecccccCcchh---h-hhccCCCcceecc-----C----CcCCcC--CCCCC-cccCCCCHHHH
Confidence 999999999999999999999998642 1 1112221111000 0 000111 11222 24899999999
Q ss_pred HHHHHHHHHhHhccCccEEEeCCcccch----------------------hHHHHHH---HhhcCC-eEEEEEeeCCCC-
Q 003004 658 KDIKEWLCWLRNEIGYDGWRLDFVRGFW----------------------GGYVKDY---LEATEP-YFAVGEYWDSLS- 710 (858)
Q Consensus 658 ~~i~~~l~~Wl~e~GIDGFRlDaa~~~~----------------------~~~i~~i---~~~~~p-~~liGE~w~~~~- 710 (858)
++|++++++|++++||||||+|++.++. ..|++.+ ++...| +++|||.|.+.+
T Consensus 285 ~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~ 364 (639)
T PRK14706 285 MFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPG 364 (639)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcC
Confidence 9999999999999999999999987541 1344443 334445 999999997522
Q ss_pred ----cccCC-CCccc-hHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEccc
Q 003004 711 ----YTYGE-MDHNQ-DAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 784 (858)
Q Consensus 711 ----~~~G~-mnY~~-~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfle 784 (858)
...|. ++|.. ..+.+.+++|+..... .+.+. ...+. +. ... .......|++
T Consensus 365 v~~~~~~G~gFD~~w~~~w~~~~l~~~~~~~~-~r~~~-------~~~lt------~~-------~~y--~~~e~~il~~ 421 (639)
T PRK14706 365 VTVPTPYGLGFDYKWAMGWMNDTLAYFEQDPL-WRKYH-------HHKLT------FF-------NVY--RTSENYVLAI 421 (639)
T ss_pred cccccCCCCccccEeccHHHHHHHHHhccCch-hhhhc-------hhccc------hh-------hhh--hccccEecCC
Confidence 11121 22211 1244555555432110 00000 00000 00 000 0012234789
Q ss_pred CCCCCCCCCC-----CCCC----hhHHHHHHHHHHhcCCceeEechhhHH----------------------HHHHHHHH
Q 003004 785 NHDTGSTQGH-----WRFP----GGREMQGYAYILTHPGTPSVFYDHIFS----------------------HYRQEIEA 833 (858)
Q Consensus 785 NHDt~R~~s~-----~~~~----~~~~klA~allltlPGiP~IYYGdE~~----------------------~l~~~~kk 833 (858)
|||+.|.... +.++ .++++++++++||+||+||||||+|++ .+.+++|+
T Consensus 422 SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~ 501 (639)
T PRK14706 422 SHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRR 501 (639)
T ss_pred CCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHH
Confidence 9999886431 2222 356899999999999999999999982 38899999
Q ss_pred HHHHHHhCccccCCC-----eEEEecC
Q 003004 834 LLSVRKRNKIHCRSR-----VSIRMLT 855 (858)
Q Consensus 834 Li~lRk~~paL~~G~-----~~~l~a~ 855 (858)
|++||+++|+|+.|+ ++++..+
T Consensus 502 L~~L~k~~paL~~gd~~~~~f~wi~~~ 528 (639)
T PRK14706 502 LNQLYRERPDWHRGDKREEGLYWVSAD 528 (639)
T ss_pred HHHHHHhCHHHhhCCCCCCCeEEEEee
Confidence 999999999998776 6666553
No 20
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.9e-41 Score=415.25 Aligned_cols=318 Identities=21% Similarity=0.302 Sum_probs=216.2
Q ss_pred CCCcccceeeeeeeccccCC------CCCcHHHHHHHHHHHHhCCCCEEEeCCCCCC--------------------CCC
Q 003004 502 PGTGTGFEILCQGFNWESHK------SGRWYMELKEKATELSSLGFSVIWLPPPTES--------------------VSP 555 (858)
Q Consensus 502 ~~~~~~yei~~~~F~Wd~~~------~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes--------------------~s~ 555 (858)
..+.++||+++++|+.+... ..|+|+||+++|||||+||||+|||||||+. ..+
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~yn 528 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYN 528 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccc
Confidence 46789999999999965432 1389999999999999999999999999862 125
Q ss_pred CCCCCccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcC-CCCCCCccC
Q 003004 556 EGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRL-NWDDRAVVA 626 (858)
Q Consensus 556 hGYd~~Dy~~IDp~lGt--------~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~-~w~~~~~~~ 626 (858)
|||++.+|++++++||+ .+|||+||++||++||+||||+|+|||+..+. |.+.. .|...
T Consensus 529 WGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~p~Yy~~---- 596 (1111)
T TIGR02102 529 WGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLEPNYYHF---- 596 (1111)
T ss_pred cCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccCCCceEe----
Confidence 99999999999999998 48999999999999999999999999987542 11100 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccchhHHHHHHHh---hcCC-eEEE
Q 003004 627 DDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEP-YFAV 702 (858)
Q Consensus 627 ~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~~~~i~~i~~---~~~p-~~li 702 (858)
....+..... + +..+++.+++.||++|++++++|+++|||||||||++.++..++++.+.+ +.+| ++++
T Consensus 597 ----~~~~G~~~~~--~-~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~li 669 (1111)
T TIGR02102 597 ----MDADGTPRTS--F-GGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMI 669 (1111)
T ss_pred ----eCCCCCcccc--c-CCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEE
Confidence 0001111111 1 23578999999999999999999999999999999998765555444332 3455 9999
Q ss_pred EEeeCCC----CcccC-----CCCcc--chHHHHHHHHHHHhcCCCcc--ccc---hhhHHHHHHHhhccchhhcccccC
Q 003004 703 GEYWDSL----SYTYG-----EMDHN--QDAHRQRIIDWINAASGTAG--AFD---VTTKGILHSALDRCEYWRLSDEKG 766 (858)
Q Consensus 703 GE~w~~~----~~~~G-----~mnY~--~~~~~~~l~~~l~~~~~~~~--~fD---~~l~~~l~~~l~~~~~~~l~~~~~ 766 (858)
||.|+.. .+..+ -|... ...|.+.+.+++.+...... .|- ......+...+ .+
T Consensus 670 GE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i-----------~g 738 (1111)
T TIGR02102 670 GEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNI-----------KA 738 (1111)
T ss_pred EecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhh-----------cC
Confidence 9999741 11100 01100 11234444444442111000 000 00000111111 11
Q ss_pred CCCCCcCCCCCceEEcccCCCCCCCCCCCCC--------C------hhHHHHHHHHHHhcCCceeEechhhH--------
Q 003004 767 KPPGVVGWWPSRAVTFIENHDTGSTQGHWRF--------P------GGREMQGYAYILTHPGTPSVFYDHIF-------- 824 (858)
Q Consensus 767 ~~~~l~~~~p~~~vnfleNHDt~R~~s~~~~--------~------~~~~klA~allltlPGiP~IYYGdE~-------- 824 (858)
.+.......|...+||+++||+.++...+.. . ..|.++|.+++|+.+|+||||+|||+
T Consensus 739 ~~~~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnn 818 (1111)
T TIGR02102 739 QPHNFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRN 818 (1111)
T ss_pred CccccccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCc
Confidence 1111112357789999999999987443211 0 13778999999999999999999987
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHhCccc
Q 003004 825 ------------------------------------------------------------SHYRQEIEALLSVRKRNKIH 844 (858)
Q Consensus 825 ------------------------------------------------------------~~l~~~~kkLi~lRk~~paL 844 (858)
.++++++|.||+|||++|+|
T Consensus 819 n~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~f 898 (1111)
T TIGR02102 819 PDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAF 898 (1111)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccc
Confidence 04689999999999999999
Q ss_pred cCCCe
Q 003004 845 CRSRV 849 (858)
Q Consensus 845 ~~G~~ 849 (858)
+.+++
T Consensus 899 r~~~~ 903 (1111)
T TIGR02102 899 RLGSK 903 (1111)
T ss_pred cccch
Confidence 87765
No 21
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1e-39 Score=385.95 Aligned_cols=317 Identities=19% Similarity=0.244 Sum_probs=218.9
Q ss_pred CCCCcccceeeeeeeccccCCCCCcHHHHHHH-HHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHH
Q 003004 501 SPGTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELK 577 (858)
Q Consensus 501 ~~~~~~~yei~~~~F~Wd~~~~GGdl~GI~ek-LdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk 577 (858)
.....++||+++++|.-+..+..+++++++++ |||||+||||+||||||++++ .+|||++.+||+++|+||+.++||
T Consensus 243 ~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk 322 (730)
T PRK12568 243 VPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFA 322 (730)
T ss_pred CCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHH
Confidence 45678899999999984433223689999998 599999999999999999986 479999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHH
Q 003004 578 DVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVR 657 (858)
Q Consensus 578 ~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr 657 (858)
+||++||++||+||||+|+||++.+.. + +..|++...|... ++ .... ..+|.++ .+|+.+|+||
T Consensus 323 ~lV~~~H~~Gi~VIlD~V~nH~~~d~~---~-l~~fdg~~~Ye~~-----d~----~~g~--~~~W~~~-~~N~~~peVr 386 (730)
T PRK12568 323 QFVDACHRAGIGVILDWVSAHFPDDAH---G-LAQFDGAALYEHA-----DP----REGM--HRDWNTL-IYNYGRPEVT 386 (730)
T ss_pred HHHHHHHHCCCEEEEEeccccCCcccc---c-cccCCCccccccC-----CC----cCCc--cCCCCCe-ecccCCHHHH
Confidence 999999999999999999999997642 1 1122222111110 00 0011 1122333 5899999999
Q ss_pred HHHHHHHHHhHhccCccEEEeCCcccch------------------------hHHHHHH---HhhcCC-eEEEEEeeCCC
Q 003004 658 KDIKEWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDY---LEATEP-YFAVGEYWDSL 709 (858)
Q Consensus 658 ~~i~~~l~~Wl~e~GIDGFRlDaa~~~~------------------------~~~i~~i---~~~~~p-~~liGE~w~~~ 709 (858)
++|++++++|+++|||||||+|++..+. .+|++++ ++...| +++|||.+...
T Consensus 387 ~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~ 466 (730)
T PRK12568 387 AYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAW 466 (730)
T ss_pred HHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCC
Confidence 9999999999999999999999875331 1244443 333445 99999987543
Q ss_pred C-----cccCCCCccc---hHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEE
Q 003004 710 S-----YTYGEMDHNQ---DAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVT 781 (858)
Q Consensus 710 ~-----~~~G~mnY~~---~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vn 781 (858)
+ ...|.+.+.. ..+.+.+++|+...... +...+..+..+..+. -...+.
T Consensus 467 p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~--------r~~~h~~ltf~~~y~---------------~~e~fv 523 (730)
T PRK12568 467 PGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAE--------RAHHHSQLTFGLVYA---------------FSERFV 523 (730)
T ss_pred ccccccccCCCCCcCcEeCChhHHHHHHHHhhCchh--------hhhhhhhhhhhhhhh---------------hhccEe
Confidence 2 2223322211 13456666666532210 000011111000000 012345
Q ss_pred cccCCCCC-----CCCCCCCCCh----hHHHHHHHHHHhcCCceeEechhhH----------------------HHHHHH
Q 003004 782 FIENHDTG-----STQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIF----------------------SHYRQE 830 (858)
Q Consensus 782 fleNHDt~-----R~~s~~~~~~----~~~klA~allltlPGiP~IYYGdE~----------------------~~l~~~ 830 (858)
+..|||+. ++...+.++. +.++.+++++||.||.|+||||+|+ ..+.++
T Consensus 524 lp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~ 603 (730)
T PRK12568 524 LPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQL 603 (730)
T ss_pred ccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHH
Confidence 77999984 4444444432 4588999999999999999999998 258899
Q ss_pred HHHHHHHHHhCccccCC-----CeEEEecCC
Q 003004 831 IEALLSVRKRNKIHCRS-----RVSIRMLTK 856 (858)
Q Consensus 831 ~kkLi~lRk~~paL~~G-----~~~~l~a~~ 856 (858)
+|+|++||+++|||..+ .|+++.+++
T Consensus 604 ~~dLn~ly~~~paL~~~d~~~~gf~wi~~~d 634 (730)
T PRK12568 604 VGDLNAALRRTPALYRGTHRADGFDWSVADD 634 (730)
T ss_pred HHHHHHHHHhChhhhcccCCCCCeEEEeCCC
Confidence 99999999999999544 477777654
No 22
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=6e-40 Score=374.58 Aligned_cols=312 Identities=15% Similarity=0.134 Sum_probs=214.4
Q ss_pred eeeeeeeccccCCCCCcHHHHHHHHH-HHHhCCCCEEEeCCCCC-CC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHH
Q 003004 509 EILCQGFNWESHKSGRWYMELKEKAT-ELSSLGFSVIWLPPPTE-SV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (858)
Q Consensus 509 ei~~~~F~Wd~~~~GGdl~GI~ekLd-YLk~LGVnaI~L~PIfe-s~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~ 585 (858)
++.+-.|. |+.+ ||+|+||+++|| ||++| |++|||+|+|+ ++ +++||++.||++|||+|||++||++|++
T Consensus 4 ~~~litY~-Ds~~-~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~---- 76 (495)
T PRK13840 4 KVQLITYA-DRLG-DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK---- 76 (495)
T ss_pred ceEEEEec-cCCC-CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh----
Confidence 34444554 5443 489999999999 59999 99999999994 43 5799999999999999999999999995
Q ss_pred cCCEEEEEEeecccccccc-----------CCCCCccccCCc--------CCCCCCCccCCCCCC-----C-CCCCCCCC
Q 003004 586 VGMKILGDVVLNHRCAHYQ-----------NQNGVWNIFGGR--------LNWDDRAVVADDPHF-----Q-GRGNKSSG 640 (858)
Q Consensus 586 rGIkVILD~V~NHtg~~~~-----------~~~g~w~~~~g~--------~~w~~~~~~~~~p~f-----~-~~g~~~~~ 640 (858)
||+||+|+|+||||..|+ +++.+|+.+... .+|.....+...+.| . +...++..
T Consensus 77 -giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~ 155 (495)
T PRK13840 77 -THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWT 155 (495)
T ss_pred -CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEec
Confidence 999999999999999874 122233221110 001000000001111 1 11122233
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccchh-------------HHHHHHHhhcC--CeEEEEEe
Q 003004 641 DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-------------GYVKDYLEATE--PYFAVGEY 705 (858)
Q Consensus 641 ~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~~-------------~~i~~i~~~~~--p~~liGE~ 705 (858)
.|...+||||+.||+|+++|.+++++|+ +.|||||||||+.++|+ ++++++.+..+ ...+|+|+
T Consensus 156 tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei 234 (495)
T PRK13840 156 TFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEI 234 (495)
T ss_pred cCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeC
Confidence 3667999999999999999999999999 78999999999975544 24444433222 36689999
Q ss_pred eCCCCcccCCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccC
Q 003004 706 WDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIEN 785 (858)
Q Consensus 706 w~~~~~~~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleN 785 (858)
+.... ... .+ ......+|+|++...+..++..++...+...... .|...+|||.|
T Consensus 235 ~~y~~---~~~---------~~------~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~-------~p~~~~n~L~~ 289 (495)
T PRK13840 235 HSYYK---TQI---------EI------AKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI-------RPRNAVTVLDT 289 (495)
T ss_pred ccccC---ccc---------cc------cccccEEecchhhHHHHHHHHhCCchHHHHHHHh-------CCCccEEeeec
Confidence 86310 000 00 1134677888877766666654443333222211 14455899999
Q ss_pred CCCCCC----------CCC--------------------------------------------CCCChhHHHHHHHHHHh
Q 003004 786 HDTGST----------QGH--------------------------------------------WRFPGGREMQGYAYILT 811 (858)
Q Consensus 786 HDt~R~----------~s~--------------------------------------------~~~~~~~~klA~alllt 811 (858)
||.-.+ ... +..+.+++.+|.+++|+
T Consensus 290 HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~ 369 (495)
T PRK13840 290 HDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFF 369 (495)
T ss_pred CCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHc
Confidence 998776 111 01112578999999999
Q ss_pred cCCceeEechhhH---------------------------------HHHHHHHHHHHHHHHhCccccCCCeEEEecC
Q 003004 812 HPGTPSVFYDHIF---------------------------------SHYRQEIEALLSVRKRNKIHCRSRVSIRMLT 855 (858)
Q Consensus 812 lPGiP~IYYGdE~---------------------------------~~l~~~~kkLi~lRk~~paL~~G~~~~l~a~ 855 (858)
+||||.||||+|+ +.+++-+++||++|+++||+ .|+|++-..+
T Consensus 370 ~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~~~ 445 (495)
T PRK13840 370 APGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAADG 445 (495)
T ss_pred CCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEecCC
Confidence 9999999999987 25888899999999999999 5888875443
No 23
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-40 Score=385.54 Aligned_cols=180 Identities=24% Similarity=0.389 Sum_probs=142.4
Q ss_pred chhhccccccccccccccccccccCCCCCCCCCCCcccceeeeeeeccccCCCC-CcHHHHHHHHHHHHhCCCCEEEeCC
Q 003004 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPP 548 (858)
Q Consensus 470 av~YqIFp~~~DRF~n~g~~~~~~~~p~~~~~~~~~~~yei~~~~F~Wd~~~~G-Gdl~GI~ekLdYLk~LGVnaI~L~P 548 (858)
+++|||+| |||.+ ++..+ ... .+| |||+||+++||||++|||++|||+|
T Consensus 1 ~viyqi~~---~~f~d-~~~~~----------------------~~~----~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~P 50 (505)
T COG0366 1 AVIYQIYP---DRFAD-SNGSN----------------------GPD----YDGGGDLKGITEKLDYLKELGVDAIWLSP 50 (505)
T ss_pred CcEEEEec---hhhcC-CCCCC----------------------ccC----CCCcccHHhHHHhhhHHHHhCCCEEEeCC
Confidence 57999999 99998 22210 111 115 9999999999999999999999999
Q ss_pred CCCC-CCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccccc-------C---CC-CCccccCCc
Q 003004 549 PTES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ-------N---QN-GVWNIFGGR 616 (858)
Q Consensus 549 Ifes-~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~-------~---~~-g~w~~~~g~ 616 (858)
|+++ .++|||++.||+.|||+|||++||++||++||++||+||+|+|+||++..|. . +. ..|+
T Consensus 51 i~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~----- 125 (505)
T COG0366 51 IFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYY----- 125 (505)
T ss_pred CCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCc-----
Confidence 9999 7899999999999999999999999999999999999999999999999884 0 11 1222
Q ss_pred CCCCCCC----ccCC-CCCCC-------CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccc
Q 003004 617 LNWDDRA----VVAD-DPHFQ-------GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (858)
Q Consensus 617 ~~w~~~~----~~~~-~p~f~-------~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~ 684 (858)
.|.... .+.+ ...|. ..+.++.+.+...+|+||+.|++||+++.+++++|+ ++||||||+|+++++
T Consensus 126 -~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~ 203 (505)
T COG0366 126 -IWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHI 203 (505)
T ss_pred -eEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhh
Confidence 232210 0000 11111 123445556778999999999999999999999999 599999999999987
Q ss_pred hh
Q 003004 685 WG 686 (858)
Q Consensus 685 ~~ 686 (858)
+.
T Consensus 204 ~~ 205 (505)
T COG0366 204 SK 205 (505)
T ss_pred cc
Confidence 76
No 24
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=8e-40 Score=371.46 Aligned_cols=309 Identities=16% Similarity=0.168 Sum_probs=215.2
Q ss_pred eeeeeeccccCCCC-CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCC
Q 003004 510 ILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 588 (858)
Q Consensus 510 i~~~~F~Wd~~~~G-Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGI 588 (858)
+.+..|. |+.++| |+|+|++++ ||++ ||++|||+|+|+++++|||++.||++|||+|||++||++|+++ |
T Consensus 3 v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~ 73 (470)
T TIGR03852 3 AMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y 73 (470)
T ss_pred ceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence 4556665 666555 677777777 9999 7999999999999999999999999999999999999999997 8
Q ss_pred EEEEEEeecccccccc-----------CCCCCccc-cCCcCCCCCCCc----------cCCCCCC------CCCCCCCCC
Q 003004 589 KILGDVVLNHRCAHYQ-----------NQNGVWNI-FGGRLNWDDRAV----------VADDPHF------QGRGNKSSG 640 (858)
Q Consensus 589 kVILD~V~NHtg~~~~-----------~~~g~w~~-~~g~~~w~~~~~----------~~~~p~f------~~~g~~~~~ 640 (858)
|||+|+|+||||..|+ +++.+|+. +.. .|.+... +...+.| .+.+.++..
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~--~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~ 151 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKD--FWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWN 151 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEeccc--ccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEc
Confidence 9999999999999873 12233332 110 0221100 0011111 122234455
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccchh--------------HHHHHHHhh-cC-CeEEEEE
Q 003004 641 DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG--------------GYVKDYLEA-TE-PYFAVGE 704 (858)
Q Consensus 641 ~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~~--------------~~i~~i~~~-~~-p~~liGE 704 (858)
.|...+||||+.||.|+++|.+++++|+ +.|||||||||+..+|+ ++++.+.+. .. .+++|+|
T Consensus 152 tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E 230 (470)
T TIGR03852 152 TFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPE 230 (470)
T ss_pred cCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeH
Confidence 6778999999999999999999999999 89999999999964443 234444442 23 4999999
Q ss_pred eeCCCCcccCCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEccc
Q 003004 705 YWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 784 (858)
Q Consensus 705 ~w~~~~~~~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfle 784 (858)
+++...+. +..+ .....+++|++...+..++..++...+..... ..|..++|||+
T Consensus 231 ~~~~~~~~-----------------~~~g-de~~mvY~F~lppl~l~al~~~~~~~l~~wl~-------~~p~~~~nfL~ 285 (470)
T TIGR03852 231 IHEHYTIQ-----------------FKIA-EHGYYVYDFALPMLVLYSLYSGKTNRLADWLR-------KSPMKQFTTLD 285 (470)
T ss_pred hhhhcccc-----------------cccc-cceeEEccCccchhhHHHhhccCHHHHHHHHH-------hCcccceEEee
Confidence 98632110 0001 12355677776666655555444333333221 12345579999
Q ss_pred CCCCCCCC------C-----------------------------------------CCCCChhHHHHHHHHHHhcCCcee
Q 003004 785 NHDTGSTQ------G-----------------------------------------HWRFPGGREMQGYAYILTHPGTPS 817 (858)
Q Consensus 785 NHDt~R~~------s-----------------------------------------~~~~~~~~~klA~allltlPGiP~ 817 (858)
|||.--+. + .+..+.++..+|.++||++||+|.
T Consensus 286 sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~ 365 (470)
T TIGR03852 286 THDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQ 365 (470)
T ss_pred cCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCce
Confidence 99974320 0 012235788999999999999999
Q ss_pred EechhhH---------------------------------HHHHHHHHHHHHHHHhCccccC-CCeEEEecC
Q 003004 818 VFYDHIF---------------------------------SHYRQEIEALLSVRKRNKIHCR-SRVSIRMLT 855 (858)
Q Consensus 818 IYYGdE~---------------------------------~~l~~~~kkLi~lRk~~paL~~-G~~~~l~a~ 855 (858)
||||+|+ ..+.+-+.+||++|+++||+.- |.++++..+
T Consensus 366 iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~ 437 (470)
T TIGR03852 366 VYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPS 437 (470)
T ss_pred EEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCC
Confidence 9999988 1355666778999999999975 888865443
No 25
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.8e-38 Score=385.10 Aligned_cols=309 Identities=17% Similarity=0.216 Sum_probs=210.0
Q ss_pred CCcccceeeeeeeccccCCCCCcHHHHHHH-HHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHH
Q 003004 503 GTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (858)
Q Consensus 503 ~~~~~yei~~~~F~Wd~~~~GGdl~GI~ek-LdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (858)
...++||+++++|.- +++|++++++ |||||+||||+||||||++++ .+|||++.|||+++++|||++|||+|
T Consensus 746 ~p~~IYEvHvgsf~~-----~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~l 820 (1224)
T PRK14705 746 SPMSVYEVHLGSWRL-----GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFL 820 (1224)
T ss_pred CCcEEEEEEeccccc-----CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHH
Confidence 457899999999862 5679999988 599999999999999999886 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 003004 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (858)
Q Consensus 580 V~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~ 659 (858)
|++||++||+||||+|+||++.+... ...|++...|... ++. .+. ..+|.+ ..+|+.+++||++
T Consensus 821 Vd~~H~~GI~VILD~V~nH~~~d~~~----l~~fdg~~~y~~~-----d~~---~g~---~~~Wg~-~~fn~~~~eVr~f 884 (1224)
T PRK14705 821 VDSLHQAGIGVLLDWVPAHFPKDSWA----LAQFDGQPLYEHA-----DPA---LGE---HPDWGT-LIFDFGRTEVRNF 884 (1224)
T ss_pred HHHHHHCCCEEEEEeccccCCcchhh----hhhcCCCcccccC-----Ccc---cCC---CCCCCC-ceecCCCHHHHHH
Confidence 99999999999999999999876310 0112221111100 000 011 112322 4589999999999
Q ss_pred HHHHHHHhHhccCccEEEeCCcccch------------------------hHHHHHHHh---hcCC-eEEEEEeeCCCCc
Q 003004 660 IKEWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYLE---ATEP-YFAVGEYWDSLSY 711 (858)
Q Consensus 660 i~~~l~~Wl~e~GIDGFRlDaa~~~~------------------------~~~i~~i~~---~~~p-~~liGE~w~~~~~ 711 (858)
|++++++|+++|||||||+|++.+|. -.|++++.+ ...| +++|||.+...+-
T Consensus 885 li~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~ 964 (1224)
T PRK14705 885 LVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPG 964 (1224)
T ss_pred HHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcC
Confidence 99999999999999999999986541 235555433 2345 9999999876332
Q ss_pred -----ccCCCCccc---hHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcc
Q 003004 712 -----TYGEMDHNQ---DAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 783 (858)
Q Consensus 712 -----~~G~mnY~~---~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfl 783 (858)
..|.+.+.. ..+.+.+++|+..... ...++. ..+...+ .+.+ ...+.+.
T Consensus 965 vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~-~r~~~~---~~ltf~~----~ya~---------------~e~fvl~ 1021 (1224)
T PRK14705 965 VTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPI-NRKWHH---GTITFSL----VYAF---------------TENFLLP 1021 (1224)
T ss_pred ccccccCCCccCCcEecchhhHHHHHHhhhCcc-hhhccc---chHHHHH----HHHh---------------hcCEecc
Confidence 233322211 1234445555543210 000000 0000000 0000 1123345
Q ss_pred cCCCCCCC-----CCCCCCC----hhHHHHHHHHHHhcCCceeEechhhH----------------------HHHHHHHH
Q 003004 784 ENHDTGST-----QGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIF----------------------SHYRQEIE 832 (858)
Q Consensus 784 eNHDt~R~-----~s~~~~~----~~~~klA~allltlPGiP~IYYGdE~----------------------~~l~~~~k 832 (858)
.|||.... ...+.++ -..++++++++|++||+|+||||+|+ ..+..++|
T Consensus 1022 ~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~r 1101 (1224)
T PRK14705 1022 ISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTK 1101 (1224)
T ss_pred cccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHH
Confidence 68997531 1112222 14578999999999999999999998 25888999
Q ss_pred HHHHHHHhCccccC-----CCeEEEecC
Q 003004 833 ALLSVRKRNKIHCR-----SRVSIRMLT 855 (858)
Q Consensus 833 kLi~lRk~~paL~~-----G~~~~l~a~ 855 (858)
+|++||+++|+|.. ..|+++.++
T Consensus 1102 dLn~ly~~~paL~~~d~~~~gf~wi~~~ 1129 (1224)
T PRK14705 1102 DLNELYTSTPALYQRDNEPGGFQWINGG 1129 (1224)
T ss_pred HHHHHHhcChhhhccCCCCCceEEeecC
Confidence 99999999999953 347777544
No 26
>PLN02960 alpha-amylase
Probab=100.00 E-value=2.6e-37 Score=365.51 Aligned_cols=312 Identities=17% Similarity=0.189 Sum_probs=203.8
Q ss_pred CCcccceeeeeeeccccCCCCCcHHHHHHH-HHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHH
Q 003004 503 GTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (858)
Q Consensus 503 ~~~~~yei~~~~F~Wd~~~~GGdl~GI~ek-LdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (858)
...++||++++.|. ..+.=|+|++++++ |||||+||||+||||||++.+ .+|||++.||++++++|||+++||+|
T Consensus 394 ~~~vIYElHvg~~~--~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~L 471 (897)
T PLN02960 394 KSLRIYECHVGISG--SEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRL 471 (897)
T ss_pred CCcEEEEEeccccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHH
Confidence 45789999998764 22222789999976 999999999999999999876 46999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCC-CCCCCCCCCCCCCCCCCCCCcHHHHH
Q 003004 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRK 658 (858)
Q Consensus 580 V~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~-~~g~~~~~~~~~~lPdLN~~np~Vr~ 658 (858)
|++||++||+||||+|+||++.++.. + ...|+|...+ +|. +...+...|+ ...+|+.+++||+
T Consensus 472 Vd~aH~~GI~VILDvV~NH~~~d~~~--~-L~~FDG~~~~----------Yf~~~~~g~~~~WG---~~~fNy~~~eVr~ 535 (897)
T PLN02960 472 VDEAHGLGLLVFLDIVHSYAAADEMV--G-LSLFDGSNDC----------YFHSGKRGHHKRWG---TRMFKYGDHEVLH 535 (897)
T ss_pred HHHHHHCCCEEEEEecccccCCcccc--c-hhhcCCCccc----------eeecCCCCccCCCC---CcccCCCCHHHHH
Confidence 99999999999999999999987421 1 0112221100 111 1111122222 3568999999999
Q ss_pred HHHHHHHHhHhccCccEEEeCCcccch-------------------------hHHHHHH---Hhhc-CCeEEEEEeeCCC
Q 003004 659 DIKEWLCWLRNEIGYDGWRLDFVRGFW-------------------------GGYVKDY---LEAT-EPYFAVGEYWDSL 709 (858)
Q Consensus 659 ~i~~~l~~Wl~e~GIDGFRlDaa~~~~-------------------------~~~i~~i---~~~~-~p~~liGE~w~~~ 709 (858)
+|++++++|+++|||||||+|++..|. -.|++.+ +... +++++|||...+.
T Consensus 536 fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~ 615 (897)
T PLN02960 536 FLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFY 615 (897)
T ss_pred HHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCC
Confidence 999999999999999999999996421 0133332 3333 4499999988753
Q ss_pred Ccc-----cCCC--Cccch-HHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEE
Q 003004 710 SYT-----YGEM--DHNQD-AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVT 781 (858)
Q Consensus 710 ~~~-----~G~m--nY~~~-~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vn 781 (858)
+-+ .|.+ +|..+ ...+.+..++...- ....+ ...+.. .... ....+.+.+.
T Consensus 616 P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~--~r~~~---------------~~~l~~---s~~~-~~~~~~~~v~ 674 (897)
T PLN02960 616 PGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVP--DQEWS---------------MSKIVS---TLVK-NKENADKMLS 674 (897)
T ss_pred CCccccCCCCCCCcccccCCCcHHHHHHHHHhCc--CCCCC---------------hhccEe---eecc-CcCCcceEEE
Confidence 322 2332 22111 22333334443210 00000 000100 0000 1123457899
Q ss_pred cccCCCCC-----CCCCCCCCC-------hh----------HHHHHHHHHHhcCCceeEechhhH---------------
Q 003004 782 FIENHDTG-----STQGHWRFP-------GG----------REMQGYAYILTHPGTPSVFYDHIF--------------- 824 (858)
Q Consensus 782 fleNHDt~-----R~~s~~~~~-------~~----------~~klA~allltlPGiP~IYYGdE~--------------- 824 (858)
|++|||+. ++...+... .. .+..+++++++ ||+||+|||+|+
T Consensus 675 Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~ 753 (897)
T PLN02960 675 YAENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNF 753 (897)
T ss_pred EecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCcc
Confidence 99999993 222222111 01 11123455554 899999999975
Q ss_pred -----------------HHHHHHHHHHHHHHHhCccccCCCeEEEec
Q 003004 825 -----------------SHYRQEIEALLSVRKRNKIHCRSRVSIRML 854 (858)
Q Consensus 825 -----------------~~l~~~~kkLi~lRk~~paL~~G~~~~l~a 854 (858)
..+++++|.|++||+++|+|..|...+...
T Consensus 754 tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~ 800 (897)
T PLN02960 754 SFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHV 800 (897)
T ss_pred ccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeee
Confidence 257889999999999999998776555433
No 27
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-36 Score=354.64 Aligned_cols=326 Identities=28% Similarity=0.409 Sum_probs=221.6
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC-CCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
||++||.+||||||+|||++|||+||++++. +|||++.||+.|+|+|||++||++||+++|++||+||+|+|+||++..
T Consensus 37 G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~ 116 (545)
T KOG0471|consen 37 GDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSDE 116 (545)
T ss_pred cccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCCcc
Confidence 7899999999999999999999999999986 599999999999999999999999999999999999999999999976
Q ss_pred cc------C-CCC--CccccC-C----------cCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 003004 603 YQ------N-QNG--VWNIFG-G----------RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 662 (858)
Q Consensus 603 ~~------~-~~g--~w~~~~-g----------~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~ 662 (858)
+. . ..+ .|+++. + +.+|.+......++....++.++.+.+...+||||++||.|++.|.+
T Consensus 117 ~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~ 196 (545)
T KOG0471|consen 117 VEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKE 196 (545)
T ss_pred ccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHH
Confidence 53 1 111 233222 1 12333333333444455567788888889999999999999999999
Q ss_pred HHH-HhHhccCccEEEeCCcccchhHHHHHHHhhcCCeEEEEEeeCCCCccc-CCCCccchH-----HHHHHHHHHHhcC
Q 003004 663 WLC-WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQDA-----HRQRIIDWINAAS 735 (858)
Q Consensus 663 ~l~-~Wl~e~GIDGFRlDaa~~~~~~~i~~i~~~~~p~~liGE~w~~~~~~~-G~mnY~~~~-----~~~~l~~~l~~~~ 735 (858)
+++ +|+ ++|+||||+|+++++..++.. ..-...|.+-.||.|.+..+.. ..++|..+. +.......+.
T Consensus 197 ~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~--- 271 (545)
T KOG0471|consen 197 WLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVAYQYNDYGEDQPEIHDLIRAERFLLD--- 271 (545)
T ss_pred HHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhhcccccccccchhhhhHHHHHHhhhh---
Confidence 999 787 899999999999998877655 3444567899999998765432 334443320 1111111111
Q ss_pred CCccccchhhHHHHHHHhhcc--chhhcccccCCCC-------------------C--------CcCCC---CCceEEcc
Q 003004 736 GTAGAFDVTTKGILHSALDRC--EYWRLSDEKGKPP-------------------G--------VVGWW---PSRAVTFI 783 (858)
Q Consensus 736 ~~~~~fD~~l~~~l~~~l~~~--~~~~l~~~~~~~~-------------------~--------l~~~~---p~~~vnfl 783 (858)
.....+.+.-...+....... .++++......+. . .+... ...+...+
T Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~a~W~~ 351 (545)
T KOG0471|consen 272 DYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDTENRWAHWVL 351 (545)
T ss_pred hhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcCCccCCceeeee
Confidence 111222211111110000000 0000000000000 0 00000 12345677
Q ss_pred cCCCCCCCCCCCCCChhHHHHHHHHHHhcCCceeEechhhH---------------------------------------
Q 003004 784 ENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF--------------------------------------- 824 (858)
Q Consensus 784 eNHDt~R~~s~~~~~~~~~klA~allltlPGiP~IYYGdE~--------------------------------------- 824 (858)
+|||..|..++++. +..++..++++++||+|++|||+|+
T Consensus 352 ~~~~~~r~~sr~~~--~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~ 429 (545)
T KOG0471|consen 352 GNHDQARLASRFGS--DSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNAGFSEASK 429 (545)
T ss_pred cCccchhhHHHhcc--hhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccccCCCCccC
Confidence 88888888887543 3377778999999999999999997
Q ss_pred ---------------------HHHHHHHHHHHHHHHhCccccCCCeEEEecCC
Q 003004 825 ---------------------SHYRQEIEALLSVRKRNKIHCRSRVSIRMLTK 856 (858)
Q Consensus 825 ---------------------~~l~~~~kkLi~lRk~~paL~~G~~~~l~a~~ 856 (858)
+.++..++++..+|+....+..|.+....+++
T Consensus 430 ~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~ 482 (545)
T KOG0471|consen 430 TWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATP 482 (545)
T ss_pred cceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCC
Confidence 14788999999999988777777776655554
No 28
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1.9e-36 Score=365.23 Aligned_cols=195 Identities=21% Similarity=0.291 Sum_probs=144.7
Q ss_pred CCCCcccceeeeeeeccccCC----CCCcHHHHHHH-------HHHHHhCCCCEEEeCCCCCCC----------------
Q 003004 501 SPGTGTGFEILCQGFNWESHK----SGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV---------------- 553 (858)
Q Consensus 501 ~~~~~~~yei~~~~F~Wd~~~----~GGdl~GI~ek-------LdYLk~LGVnaI~L~PIfes~---------------- 553 (858)
...+.++||+|+++|+..... .-|.|.|++++ |+||++||||+|.|||||+..
T Consensus 249 ~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~ 328 (898)
T TIGR02103 249 SFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPF 328 (898)
T ss_pred CCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccch
Confidence 457889999999999853221 24778888776 777778899999999998642
Q ss_pred ------------------------------------------------CCCCCCCccCCCcCCCCCCH-------HHHHH
Q 003004 554 ------------------------------------------------SPEGYMPRDLYNLSSRYGNI-------DELKD 578 (858)
Q Consensus 554 ------------------------------------------------s~hGYd~~Dy~~IDp~lGt~-------edfk~ 578 (858)
-||||+|..|+.++..|++. .|||+
T Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~ 408 (898)
T TIGR02103 329 SKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFRE 408 (898)
T ss_pred hhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHH
Confidence 16999999999999999984 69999
Q ss_pred HHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 003004 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 658 (858)
Q Consensus 579 LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~ 658 (858)
||++||++||+||||+|+|||+..+......+..... .|..+ +...+....+ ....+++.+|++||+
T Consensus 409 mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P--~YY~r--------~~~~G~~~n~---~~~~d~a~e~~~Vrk 475 (898)
T TIGR02103 409 MVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVP--GYYHR--------LNEDGGVENS---TCCSNTATEHRMMAK 475 (898)
T ss_pred HHHHHHHCCCEEEEEeecccccccCccCcccccccCc--HhhEe--------eCCCCCeecC---CCCcCCCCCCHHHHH
Confidence 9999999999999999999999865321111110000 00000 0001111111 122467999999999
Q ss_pred HHHHHHHHhHhccCccEEEeCCcccchhHHHHHHHhh---cCC-eEEEEEeeCC
Q 003004 659 DIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA---TEP-YFAVGEYWDS 708 (858)
Q Consensus 659 ~i~~~l~~Wl~e~GIDGFRlDaa~~~~~~~i~~i~~~---~~p-~~liGE~w~~ 708 (858)
+|++++++|+++|||||||||+++|+..++++++.++ .+| ++++||.|+.
T Consensus 476 ~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 476 LIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 9999999999999999999999998877766665443 344 9999999974
No 29
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=3.4e-34 Score=339.66 Aligned_cols=310 Identities=18% Similarity=0.216 Sum_probs=206.6
Q ss_pred CCcccceeeeeeeccccCCCCCcHHHHH-HHHHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHH
Q 003004 503 GTGTGFEILCQGFNWESHKSGRWYMELK-EKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (858)
Q Consensus 503 ~~~~~yei~~~~F~Wd~~~~GGdl~GI~-ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (858)
....+||++++.|. ..+.-|++++++ ++|||||+||||+||||||++.+ .+|||++.||++++++||+++|||+|
T Consensus 228 ~~~~IYE~Hvg~~~--~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~L 305 (758)
T PLN02447 228 AALRIYEAHVGMSS--EEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYL 305 (758)
T ss_pred CCCEEEEEeCCccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHH
Confidence 34679999998664 222226788875 56999999999999999999987 47999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCC-CCCCCCCCCCCCCCCCCCcHHHHH
Q 003004 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGR-GNKSSGDNFHAAPNIDHSQDFVRK 658 (858)
Q Consensus 580 V~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~-g~~~~~~~~~~lPdLN~~np~Vr~ 658 (858)
|++||++||+||||+|+||++.++.. + ...|++. ...+|... .++...| +...+|+.+++||+
T Consensus 306 Vd~aH~~GI~VilDvV~nH~~~~~~~--g-l~~fDg~----------~~~Yf~~~~~g~~~~w---~~~~~N~~~~eVr~ 369 (758)
T PLN02447 306 IDKAHSLGLRVLMDVVHSHASKNTLD--G-LNGFDGT----------DGSYFHSGPRGYHWLW---DSRLFNYGNWEVLR 369 (758)
T ss_pred HHHHHHCCCEEEEEeccccccccccc--c-ccccCCC----------CccccccCCCCCcCcC---CCceecCCCHHHHH
Confidence 99999999999999999999976421 1 1111111 00112111 1111112 23469999999999
Q ss_pred HHHHHHHHhHhccCccEEEeCCcccchh--------------------------HHHHH---HHhhcCC-eEEEEEeeCC
Q 003004 659 DIKEWLCWLRNEIGYDGWRLDFVRGFWG--------------------------GYVKD---YLEATEP-YFAVGEYWDS 708 (858)
Q Consensus 659 ~i~~~l~~Wl~e~GIDGFRlDaa~~~~~--------------------------~~i~~---i~~~~~p-~~liGE~w~~ 708 (858)
+|++++++|+++|||||||+|+++++.- .|++. .+....| +++|||.+.+
T Consensus 370 fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~ 449 (758)
T PLN02447 370 FLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSG 449 (758)
T ss_pred HHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 9999999999999999999999985520 12332 3334455 9999999876
Q ss_pred CCcc-----cCCCCccch---HHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceE
Q 003004 709 LSYT-----YGEMDHNQD---AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAV 780 (858)
Q Consensus 709 ~~~~-----~G~mnY~~~---~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~v 780 (858)
.+-+ .|.+.+... .+.+..++|+.... ....+. ..+...+. +..+..+.|
T Consensus 450 ~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~--d~~~~~---~~l~~sl~-----------------~r~~~E~~I 507 (758)
T PLN02447 450 MPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKR--DEDWSM---GDIVHTLT-----------------NRRYTEKCV 507 (758)
T ss_pred CCCccccCCCCcCCcceEECCccchHHHHHHhhCC--CcccCH---HHHHHHHh-----------------cccccCceE
Confidence 4322 333222211 23344455554322 111111 11111110 001224668
Q ss_pred EcccCCCCCCCCC--------------CCCCC-h-----h----HHHHHHHHHHhcCCc-eeEechhhH-----------
Q 003004 781 TFIENHDTGSTQG--------------HWRFP-G-----G----REMQGYAYILTHPGT-PSVFYDHIF----------- 824 (858)
Q Consensus 781 nfleNHDt~R~~s--------------~~~~~-~-----~----~~klA~allltlPGi-P~IYYGdE~----------- 824 (858)
.|.+|||+..... .+... . . .-|+..+++|++||. +++|||.|+
T Consensus 508 ~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~ 587 (758)
T PLN02447 508 AYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPRE 587 (758)
T ss_pred eccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCccc
Confidence 8999999976521 11110 0 1 124566789999999 699999987
Q ss_pred -----------------------HHHHHHHHHHHHHHHhCccccCCCeEEEe
Q 003004 825 -----------------------SHYRQEIEALLSVRKRNKIHCRSRVSIRM 853 (858)
Q Consensus 825 -----------------------~~l~~~~kkLi~lRk~~paL~~G~~~~l~ 853 (858)
..|.+|+|.|++|++++++|..| ++++.
T Consensus 588 ~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~-~~~i~ 638 (758)
T PLN02447 588 GNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSE-HQYVS 638 (758)
T ss_pred ccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCC-Cceee
Confidence 13677999999999999999865 55544
No 30
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.6e-34 Score=347.51 Aligned_cols=194 Identities=19% Similarity=0.235 Sum_probs=140.0
Q ss_pred CCCCcccceeeeeeeccccCC----CCCcHHHHHHH-------HHHHHhCCCCEEEeCCCCCCC----------------
Q 003004 501 SPGTGTGFEILCQGFNWESHK----SGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV---------------- 553 (858)
Q Consensus 501 ~~~~~~~yei~~~~F~Wd~~~----~GGdl~GI~ek-------LdYLk~LGVnaI~L~PIfes~---------------- 553 (858)
...+.++||+++++|+-.... .-|.|.|++++ |+||++||||+|+|||+|+..
T Consensus 336 ~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~ 415 (970)
T PLN02877 336 SFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKE 415 (970)
T ss_pred CCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccch
Confidence 346889999999999963221 13778888776 777777899999999999741
Q ss_pred -----------------------CCCCCCCccCCCcCCCCCCH-------HHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 554 -----------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 554 -----------------------s~hGYd~~Dy~~IDp~lGt~-------edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
.||||+|..|+.++..|++. .|||+||++||++||+||||+|+|||+..+
T Consensus 416 l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g 495 (970)
T PLN02877 416 LEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSG 495 (970)
T ss_pred hccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCC
Confidence 46999999999999999983 589999999999999999999999998643
Q ss_pred cC-CCCCccccCCcC-CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCc
Q 003004 604 QN-QNGVWNIFGGRL-NWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (858)
Q Consensus 604 ~~-~~g~w~~~~g~~-~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa 681 (858)
+. .... +.... .|..+ ....|.... .....+.+.+++.||++|++.+++|+++|||||||||.+
T Consensus 496 ~~~~~s~---ld~~vP~YY~r--------~~~~G~~~n---s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlm 561 (970)
T PLN02877 496 PFDENSV---LDKIVPGYYLR--------RNSDGFIEN---STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLM 561 (970)
T ss_pred Ccchhhc---ccCCCCCceEE--------ECCCCCccc---CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 21 0111 11000 00000 000111111 112335678899999999999999999999999999999
Q ss_pred ccchhHHHHHH---Hhhc---------CCeEEEEEeeCC
Q 003004 682 RGFWGGYVKDY---LEAT---------EPYFAVGEYWDS 708 (858)
Q Consensus 682 ~~~~~~~i~~i---~~~~---------~p~~liGE~w~~ 708 (858)
.++..+.+.++ +++. +.++++||.|+.
T Consensus 562 g~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~ 600 (970)
T PLN02877 562 GHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDF 600 (970)
T ss_pred ccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCC
Confidence 98876643332 2222 239999999974
No 31
>PLN02784 alpha-amylase
Probab=100.00 E-value=2.7e-35 Score=346.87 Aligned_cols=163 Identities=27% Similarity=0.488 Sum_probs=148.5
Q ss_pred cccccccccccccCCCCCCCCCCCC-CCCC--CCCCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCc
Q 003004 47 CSFKKLQKITVSSSTSTSTSPATST-DTTP--VRPGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGK 123 (858)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~t~~~~~ 123 (858)
..|+|+|||++|+|+++++.++.++ +.++ ..++.++|||++||.|++.|+|+|+|+|++|++++|++|+|+||+||+
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~ 308 (894)
T PLN02784 229 GALGQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGD 308 (894)
T ss_pred CccccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCC
Confidence 5679999999999999999888765 4444 889999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeeecCCCCCCccCCCCCCCCCCcccccccccccccccccCCCceeEEEEeecCCCCceeeEEEEEeCCccchhh
Q 003004 124 WILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQ 203 (858)
Q Consensus 124 ~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~ 203 (858)
||||||| ||+..+||++||++|+|+||+. |+|||||||++.+++.. ..+.|++|+++.||+||||++ +|+|||
T Consensus 309 vvlHWgV--~k~~~~eW~~Pp~~~~P~~sv~-~~kA~eT~~~~~~~~~~---~~~~~~ld~~~~g~~FVLk~~-~g~W~~ 381 (894)
T PLN02784 309 VVVHWGV--CKDGAKTWEIPPEPHPPETSLF-KNKALQTMLQQKDDGNG---SSGLFSLDGELEGLLFVLKLN-EGTWLR 381 (894)
T ss_pred EEEEeEe--ccCCCCcccCCCCCCCCCccee-cccccccccccccCCCc---ceEEEecCCCeeEEEEEEECC-CCchhh
Confidence 9999999 9998899999999999999985 99999999999876532 445677899999999999998 668999
Q ss_pred cCCcceeEeCccc
Q 003004 204 HRGRDFKVPLVDY 216 (858)
Q Consensus 204 ~~g~df~v~l~~~ 216 (858)
|+|+||||||+.+
T Consensus 382 ~~G~DF~Ipl~~~ 394 (894)
T PLN02784 382 CNGNDFYVPLLTS 394 (894)
T ss_pred cCCccEEEeCCch
Confidence 9999999999855
No 32
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=340.29 Aligned_cols=322 Identities=21% Similarity=0.301 Sum_probs=218.1
Q ss_pred CCCCCCCCcccceeeeeeeccccCCC-----CCcHHHHHHH--HHHHHhCCCCEEEeCCCCCCC-----------CCCCC
Q 003004 497 PAKISPGTGTGFEILCQGFNWESHKS-----GRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGY 558 (858)
Q Consensus 497 ~~~~~~~~~~~yei~~~~F~Wd~~~~-----GGdl~GI~ek--LdYLk~LGVnaI~L~PIfes~-----------s~hGY 558 (858)
+.+++.++.++||+++++|+- .+++ .|+|.|++++ |+|||+||||+|.|+||+... .||||
T Consensus 164 ~~~~p~~~~vIYE~HVr~fT~-~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGY 242 (697)
T COG1523 164 PPRIPWEDTVIYEAHVRDFTQ-LHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGY 242 (697)
T ss_pred CCCCCccceEEEEeeeccccc-CCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCC
Confidence 344668899999999999994 2221 4889999999 999999999999999999642 48999
Q ss_pred CCccCCCcCCCCCCH-------HHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCC
Q 003004 559 MPRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHF 631 (858)
Q Consensus 559 d~~Dy~~IDp~lGt~-------edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f 631 (858)
+|..||+++++|-+. .|||.||+++|++||.||||+|||||+..... +.=..|.+-. ...+|
T Consensus 243 dP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~--g~t~~f~~id---------~~~Yy 311 (697)
T COG1523 243 DPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNEL--GPTLSFRGID---------PNYYY 311 (697)
T ss_pred CcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCc--CcccccccCC---------cCceE
Confidence 999999999999653 49999999999999999999999999864210 1001111100 00011
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccchhHHH-----HHHHhhc------CC
Q 003004 632 Q--GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV-----KDYLEAT------EP 698 (858)
Q Consensus 632 ~--~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~~~~i-----~~i~~~~------~p 698 (858)
. ..+.+.. +.+....||.++|.||++|++.++||+++++|||||||.|..+-++-. ..+.... ..
T Consensus 312 r~~~dg~~~N--~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~ 389 (697)
T COG1523 312 RLDPDGYYSN--GTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSG 389 (697)
T ss_pred EECCCCCeec--CCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccC
Confidence 0 1112211 223345699999999999999999999999999999999975433321 1111111 22
Q ss_pred eEEEEEeeCCC--CcccCCCC--cc----chHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCC
Q 003004 699 YFAVGEYWDSL--SYTYGEMD--HN----QDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPG 770 (858)
Q Consensus 699 ~~liGE~w~~~--~~~~G~mn--Y~----~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~ 770 (858)
..++||-|+-. .|..|... +. .+.|++.+.+|+.+..+.... +...+.++. + .-.
T Consensus 390 ~kliAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~--------~a~rl~gS~--d-------~~~ 452 (697)
T COG1523 390 VKLIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGE--------FAKRLAGSS--D-------LYK 452 (697)
T ss_pred ceeeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccHHH--------HHHHhhcCc--c-------hhh
Confidence 55899999653 34455444 21 124667777777654432222 222221110 0 011
Q ss_pred CcCCCCCceEEcccCCCCCCCCCCC------------------------CC--------------ChhHHHHHHHHHHhc
Q 003004 771 VVGWWPSRAVTFIENHDTGSTQGHW------------------------RF--------------PGGREMQGYAYILTH 812 (858)
Q Consensus 771 l~~~~p~~~vnfleNHDt~R~~s~~------------------------~~--------------~~~~~klA~allltl 812 (858)
..+..|...+||+..||...+.... +. .....+..++.+|+.
T Consensus 453 ~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tllls 532 (697)
T COG1523 453 RNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLS 532 (697)
T ss_pred ccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhh
Confidence 1224567899999999986543211 00 013355666777888
Q ss_pred CCceeEechhhH---------------------------HHHHHHHHHHHHHHHhCccccCCCe
Q 003004 813 PGTPSVFYDHIF---------------------------SHYRQEIEALLSVRKRNKIHCRSRV 849 (858)
Q Consensus 813 PGiP~IYYGdE~---------------------------~~l~~~~kkLi~lRk~~paL~~G~~ 849 (858)
.|+||+-.|||+ .+++++.+.||+|||+|++|++..|
T Consensus 533 qG~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~~~f 596 (697)
T COG1523 533 QGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRRRSF 596 (697)
T ss_pred cCCcccccccccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhcccch
Confidence 999999999998 2689999999999999999987443
No 33
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=9.4e-33 Score=316.43 Aligned_cols=307 Identities=15% Similarity=0.093 Sum_probs=219.9
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCC---------CC-CCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTES---------VS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes---------~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHt 599 (858)
....+||++|||++|||+|++++ +. ++|||+.| +.|||.|||++||++||++||++|||||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 66789999999999999999999 65 78999999 599999999999999999999999999999999999
Q ss_pred cccccC--CCCCccccCCcC-----------CCCCCCcc---------------------C--CCCCCCC----------
Q 003004 600 CAHYQN--QNGVWNIFGGRL-----------NWDDRAVV---------------------A--DDPHFQG---------- 633 (858)
Q Consensus 600 g~~~~~--~~g~w~~~~g~~-----------~w~~~~~~---------------------~--~~p~f~~---------- 633 (858)
|..|+. ....+.+|.|.+ .|.+.... . ....|..
T Consensus 156 s~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~ 235 (688)
T TIGR02455 156 GKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSA 235 (688)
T ss_pred CCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCcee
Confidence 998751 111133344433 33332111 0 0012211
Q ss_pred -----------CCCCCCCCCCCCCCCCCCCcHH--HHHHHH-HHHHHhHhccCccEEEeCCcccc-------------hh
Q 003004 634 -----------RGNKSSGDNFHAAPNIDHSQDF--VRKDIK-EWLCWLRNEIGYDGWRLDFVRGF-------------WG 686 (858)
Q Consensus 634 -----------~g~~~~~~~~~~lPdLN~~np~--Vr~~i~-~~l~~Wl~e~GIDGFRlDaa~~~-------------~~ 686 (858)
++.+|...|+..+|+||+.||. ||+.|. +++++|+ +.|+||||+|++..+ ..
T Consensus 236 d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~h 314 (688)
T TIGR02455 236 TGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEGH 314 (688)
T ss_pred cccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCccC
Confidence 1223344567899999999999 999999 8999999 899999999997421 11
Q ss_pred HH---HHHHHh--hcCC-eEEEEEeeCCCCcccCCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhh
Q 003004 687 GY---VKDYLE--ATEP-YFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWR 760 (858)
Q Consensus 687 ~~---i~~i~~--~~~p-~~liGE~w~~~~~~~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~ 760 (858)
.+ .++++. ..++ .++++|.--. .+.+..|+.+ +....|||.....+..++..++..-
T Consensus 315 ~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g~--~~dl~~dF~t~p~~~~AL~tgda~p 377 (688)
T TIGR02455 315 PLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSHG--GADLSYDFITRPAYHHALLTGDTEF 377 (688)
T ss_pred HHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhCC--CcceeecccccHHHHHHHHcCCHHH
Confidence 22 233333 2344 8889888653 4567788873 6788899988777777776554332
Q ss_pred cccccCCCCCCcCCCCCceEEcccCCCCCCCC--------------------------------------C---------
Q 003004 761 LSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQ--------------------------------------G--------- 793 (858)
Q Consensus 761 l~~~~~~~~~l~~~~p~~~vnfleNHDt~R~~--------------------------------------s--------- 793 (858)
+.......+. .+-.+.+.++|+-|||.-... .
T Consensus 378 Lr~~L~~~~~-~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~ 456 (688)
T TIGR02455 378 LRLMLKEMHA-FGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLKF 456 (688)
T ss_pred HHHHHHhhhc-CCCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccceE
Confidence 2222211110 111224568899999971100 0
Q ss_pred ------------------------CCCCChhHHHHHHHHHHh----cCCceeEech--------------hhH-------
Q 003004 794 ------------------------HWRFPGGREMQGYAYILT----HPGTPSVFYD--------------HIF------- 824 (858)
Q Consensus 794 ------------------------~~~~~~~~~klA~alllt----lPGiP~IYYG--------------dE~------- 824 (858)
....+.+++++++++|++ +||+|+|||| ||+
T Consensus 457 ~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~w 536 (688)
T TIGR02455 457 VTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTRW 536 (688)
T ss_pred EeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCcccc
Confidence 011234678999999999 9999999999 776
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHhCccccCCCeEEEecCC
Q 003004 825 ---------------------------------------SHYRQEIEALLSVRKRNKIHCRSRVSIRMLTK 856 (858)
Q Consensus 825 ---------------------------------------~~l~~~~kkLi~lRk~~paL~~G~~~~l~a~~ 856 (858)
+.+.+..++|+++|++++++..|.+.++.+++
T Consensus 537 l~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~ 607 (688)
T TIGR02455 537 IHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQA 607 (688)
T ss_pred ccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCC
Confidence 25899999999999999999999998887654
No 34
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-32 Score=312.76 Aligned_cols=285 Identities=20% Similarity=0.261 Sum_probs=185.1
Q ss_pred CCCcccceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHH
Q 003004 502 PGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (858)
Q Consensus 502 ~~~~~~yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (858)
....++||+++.+|.+| .--|++++.+++|||||+||||+|.||||.+.+ .+|||+++-||++..+||+++|||+|
T Consensus 142 ~e~~vIYElHvGs~~~~--~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~f 219 (628)
T COG0296 142 WEPIVIYELHVGSFTPD--RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKAL 219 (628)
T ss_pred CCCceEEEEEeeeccCC--CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHH
Confidence 35788999999999863 223789999999999999999999999999987 47999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 003004 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (858)
Q Consensus 580 V~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~ 659 (858)
|++||++||.||||+|+||.+.+.. + ...|++..-+... ++. . +. ...|.... .|+..++||+|
T Consensus 220 VD~aH~~GIgViLD~V~~HF~~d~~---~-L~~fdg~~~~e~~-----~~~-~---~~--~~~Wg~~i-~~~gr~EVR~F 283 (628)
T COG0296 220 VDAAHQAGIGVILDWVPNHFPPDGN---Y-LARFDGTFLYEHE-----DPR-R---GE--HTDWGTAI-FNYGRNEVRNF 283 (628)
T ss_pred HHHHHHcCCEEEEEecCCcCCCCcc---h-hhhcCCccccccC-----Ccc-c---cc--CCCcccch-hccCcHHHHHH
Confidence 9999999999999999999998641 0 1122332111110 000 0 00 01122222 34558999999
Q ss_pred HHHHHHHhHhccCccEEEeCCcccchh------------------------HHHHHH---HhhcCC-eEEEEEeeCCCCc
Q 003004 660 IKEWLCWLRNEIGYDGWRLDFVRGFWG------------------------GYVKDY---LEATEP-YFAVGEYWDSLSY 711 (858)
Q Consensus 660 i~~~l~~Wl~e~GIDGFRlDaa~~~~~------------------------~~i~~i---~~~~~p-~~liGE~w~~~~~ 711 (858)
|++.+.+|+++|+|||+|+||+..|+. ++++.. +....| ++.|+|.|.+.+.
T Consensus 284 ll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~ 363 (628)
T COG0296 284 LLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPH 363 (628)
T ss_pred HHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCC
Confidence 999999999999999999999974421 122221 222344 8999999987432
Q ss_pred c-----cCCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccCC
Q 003004 712 T-----YGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 786 (858)
Q Consensus 712 ~-----~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleNH 786 (858)
. .|....... ....++... + .++......+-... +.....+-..+...+.++-||
T Consensus 364 ~t~~~~~gG~gf~yk----~nmg~m~D~--------------~-~y~~~~~~~r~~~h-~~~tf~~~y~~se~~~l~~sH 423 (628)
T COG0296 364 VTLPVAIGGLGFGYK----WNMGWMHDT--------------L-FYFGKDPVYRKYHH-GELTFGLLYAFSENVVLPLSH 423 (628)
T ss_pred ceeeecccccchhhh----hhhhhHhhH--------------H-HhcccCcccccccc-CCCccccccccceeEeccccc
Confidence 1 222221111 001111110 0 00000000000000 000000001245678999999
Q ss_pred CCC--CCCCC---CC----CChhHHHHHHHHHHhcCCceeEechhhH
Q 003004 787 DTG--STQGH---WR----FPGGREMQGYAYILTHPGTPSVFYDHIF 824 (858)
Q Consensus 787 Dt~--R~~s~---~~----~~~~~~klA~allltlPGiP~IYYGdE~ 824 (858)
|+. -..+. +. ...+.++.++++|++.||+|++|||+|+
T Consensus 424 DevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Ef 470 (628)
T COG0296 424 DEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEF 470 (628)
T ss_pred cceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhh
Confidence 986 22221 11 1235689999999999999999999998
No 35
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=2.5e-32 Score=325.06 Aligned_cols=186 Identities=23% Similarity=0.311 Sum_probs=141.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccc
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg 600 (858)
|++|++++++||||++|||++|||+|||++. ++|||++.||+.|||.||++++|++||++||++||+||+|+|+||+|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7889999999999999999999999999874 68999999999999999999999999999999999999999999999
Q ss_pred cccc-C-------CCCCccccCCcC--CCCCCCc------c----------------------------CCCCCCC----
Q 003004 601 AHYQ-N-------QNGVWNIFGGRL--NWDDRAV------V----------------------------ADDPHFQ---- 632 (858)
Q Consensus 601 ~~~~-~-------~~g~w~~~~g~~--~w~~~~~------~----------------------------~~~p~f~---- 632 (858)
.+.. + ++|.=.+|.+++ +|..... + +.+..|.
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 8621 0 111001111111 3321000 0 0000000
Q ss_pred ------------------------------------CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEE
Q 003004 633 ------------------------------------GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (858)
Q Consensus 633 ------------------------------------~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGF 676 (858)
..-||..+.+..+|+.++.++|+|.+....++..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 00123333455689999999999999999999999966559999
Q ss_pred EeCCcccc--hhHHHHHHHhhcCC-eEEEEE-eeCC
Q 003004 677 RLDFVRGF--WGGYVKDYLEATEP-YFAVGE-YWDS 708 (858)
Q Consensus 677 RlDaa~~~--~~~~i~~i~~~~~p-~~liGE-~w~~ 708 (858)
|||+++++ +.++++++.+...+ .+++.| ++..
T Consensus 252 RIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 252 RIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 99999999 77799998777776 889999 5543
No 36
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.1e-28 Score=281.20 Aligned_cols=171 Identities=28% Similarity=0.441 Sum_probs=133.6
Q ss_pred CCCCCcccceeeeeeeccccCC---CCCcHHHHHHH-HHHHHhCCCCEEEeCCCCCCC---CCCCCCCccCCCcCCCCCC
Q 003004 500 ISPGTGTGFEILCQGFNWESHK---SGRWYMELKEK-ATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGN 572 (858)
Q Consensus 500 ~~~~~~~~yei~~~~F~Wd~~~---~GGdl~GI~ek-LdYLk~LGVnaI~L~PIfes~---s~hGYd~~Dy~~IDp~lGt 572 (858)
.+..+-.+||+++++|+-..++ -|| ++|.++| |++||.||+|||+||||||.. ..+||.+.+||+.-.+|||
T Consensus 225 ~P~~sL~IYE~HVrgfS~~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt 303 (757)
T KOG0470|consen 225 IPESSLRIYELHVRGFSSHESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGT 303 (757)
T ss_pred CChhheEEEEEeeccccCCCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccC
Confidence 4444778999999999854433 266 9999999 999999999999999999994 3699999999999999999
Q ss_pred HH------HHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCC-CCCCCCCCCCCC
Q 003004 573 ID------ELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG-RGNKSSGDNFHA 645 (858)
Q Consensus 573 ~e------dfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~-~g~~~~~~~~~~ 645 (858)
.+ |||.||++||..||-|+||+|+||++.+..+. .+.|+|.. +..+|+. ...+ .....
T Consensus 304 ~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~---l~~fdGid---------~~~Yf~~~~r~~---h~~~~ 368 (757)
T KOG0470|consen 304 PESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDG---LNMFDGID---------NSVYFHSGPRGY---HNSWC 368 (757)
T ss_pred CCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCc---chhccCcC---------CceEEEeCCccc---ccccc
Confidence 99 99999999999999999999999999843221 22233311 0111211 1111 11122
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccchh
Q 003004 646 APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 686 (858)
Q Consensus 646 lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~~ 686 (858)
...+|+++++|+++|.+.++||+.||+|||||+|.+.+|..
T Consensus 369 ~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~ 409 (757)
T KOG0470|consen 369 SRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLY 409 (757)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhh
Confidence 34589999999999999999999999999999999875443
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.95 E-value=5.1e-26 Score=272.33 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccc
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg 600 (858)
|.+|++++++|+||++|||++|||+||+++. ++|||++.||+.|||.||+.++|++||++||++||+||+|+|+||||
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 5779999999999999999999999999975 78999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 003004 601 AHY 603 (858)
Q Consensus 601 ~~~ 603 (858)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 875
No 38
>PLN03244 alpha-amylase; Provisional
Probab=99.92 E-value=3e-24 Score=250.48 Aligned_cols=282 Identities=17% Similarity=0.188 Sum_probs=174.7
Q ss_pred CcccceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHH
Q 003004 504 TGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKF 583 (858)
Q Consensus 504 ~~~~yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aA 583 (858)
...+||.++.-.. ....=|+++..+++ +++||+++++||+++|||+||++|
T Consensus 400 ~lrIYE~HvGms~--~e~kv~ty~eF~~~---------------------------vt~fFApssRYGTPeDLK~LVD~a 450 (872)
T PLN03244 400 SLRIYECHVGISG--SEPKISSFEEFTEK---------------------------VTNFFAASSRYGTPDDFKRLVDEA 450 (872)
T ss_pred CceEEEEEeeecC--CCCCcccHHHHhhc---------------------------cCcccccCcccCCHHHHHHHHHHH
Confidence 3468999997554 11112678877775 679999999999999999999999
Q ss_pred HHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCC-CCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 003004 584 HDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGR-GNKSSGDNFHAAPNIDHSQDFVRKDIKE 662 (858)
Q Consensus 584 H~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~-g~~~~~~~~~~lPdLN~~np~Vr~~i~~ 662 (858)
|++||+||||+|+||++.+... +. ..++|.. ..+|... .++...|+ ...+|+.+++|+++|++
T Consensus 451 H~~GI~VILDvV~NH~~~d~~~--GL-~~fDGt~----------~~Yf~~~~~g~~~~WG---s~~fnyg~~EVr~FLLs 514 (872)
T PLN03244 451 HGLGLLVFLDIVHSYAAADEMV--GL-SLFDGSN----------DCYFHTGKRGHHKHWG---TRMFKYGDLDVLHFLIS 514 (872)
T ss_pred HHCCCEEEEEecCccCCCcccc--ch-hhcCCCc----------cceeccCCCCccCCCC---CceecCCCHHHHHHHHH
Confidence 9999999999999999976421 10 1122210 0112111 11122232 24689999999999999
Q ss_pred HHHHhHhccCccEEEeCCcccch-------------------------h---HHHHHHHhhcCC-eEEEEEeeCCCCcc-
Q 003004 663 WLCWLRNEIGYDGWRLDFVRGFW-------------------------G---GYVKDYLEATEP-YFAVGEYWDSLSYT- 712 (858)
Q Consensus 663 ~l~~Wl~e~GIDGFRlDaa~~~~-------------------------~---~~i~~i~~~~~p-~~liGE~w~~~~~~- 712 (858)
++++|+++|||||||+|++..|. - ..+.+++....| +++|||...+.+-+
T Consensus 515 na~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt 594 (872)
T PLN03244 515 NLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLC 594 (872)
T ss_pred HHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCcc
Confidence 99999999999999999984221 0 123334445556 99999988764322
Q ss_pred ----cCCCCccch---HHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcccC
Q 003004 713 ----YGEMDHNQD---AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIEN 785 (858)
Q Consensus 713 ----~G~mnY~~~---~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfleN 785 (858)
.|.+.+.+. ...+..+.|+....... .+. ..+...+. ........++.|.||
T Consensus 595 ~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pder--w~~---~~ItfsL~----------------~nrr~~ek~~aYsES 653 (872)
T PLN03244 595 EPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHE--WSM---SKIVSTLI----------------ANKEYADKMLSYAEN 653 (872)
T ss_pred ccCCCCCCCccceecCcchHHHHHHHHhCCCcc--cCH---HHHhhhhh----------------cccCCcceEEEEecc
Confidence 333222211 12233344443321100 110 01111100 000112467899999
Q ss_pred CCCCCC-----CCCC---------CC------ChhHHHHHHHHHHhcCCce-eEechhhH--------------------
Q 003004 786 HDTGST-----QGHW---------RF------PGGREMQGYAYILTHPGTP-SVFYDHIF-------------------- 824 (858)
Q Consensus 786 HDt~R~-----~s~~---------~~------~~~~~klA~allltlPGiP-~IYYGdE~-------------------- 824 (858)
||..=. ...+ .. ....-|++.++++++||.+ ++|||.|+
T Consensus 654 HDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~a 733 (872)
T PLN03244 654 HNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLA 733 (872)
T ss_pred cceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchheeccccCCCcccccc
Confidence 998321 1000 00 0112355566788899988 79999987
Q ss_pred ------------HHHHHHHHHHHHHHHhCccccCCCeEE
Q 003004 825 ------------SHYRQEIEALLSVRKRNKIHCRSRVSI 851 (858)
Q Consensus 825 ------------~~l~~~~kkLi~lRk~~paL~~G~~~~ 851 (858)
..|.++++.|++|++++++|..|...+
T Consensus 734 rrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI 772 (872)
T PLN03244 734 NRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNI 772 (872)
T ss_pred ccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEE
Confidence 146789999999999999998664433
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.91 E-value=2e-24 Score=216.65 Aligned_cols=92 Identities=33% Similarity=0.523 Sum_probs=84.1
Q ss_pred eeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCC----CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHH
Q 003004 510 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (858)
Q Consensus 510 i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~----s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~ 585 (858)
++++.|.|..+..+|+|+||+++|+||++|||++|||+||+++. ++|||++.||+++||+|||+++|++||++||+
T Consensus 2 i~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~ 81 (166)
T smart00642 2 IYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHA 81 (166)
T ss_pred eeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHH
Confidence 34555555555557999999999999999999999999999998 78999999999999999999999999999999
Q ss_pred cCCEEEEEEeeccccc
Q 003004 586 VGMKILGDVVLNHRCA 601 (858)
Q Consensus 586 rGIkVILD~V~NHtg~ 601 (858)
+||+||+|+|+||++.
T Consensus 82 ~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 82 RGIKVILDVVINHTSD 97 (166)
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999999985
No 40
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.4e-21 Score=206.68 Aligned_cols=281 Identities=26% Similarity=0.447 Sum_probs=187.8
Q ss_pred cceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC--------CCCCCCccCCCcCCCCCCHHHHHH
Q 003004 507 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS--------PEGYMPRDLYNLSSRYGNIDELKD 578 (858)
Q Consensus 507 ~yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s--------~hGYd~~Dy~~IDp~lGt~edfk~ 578 (858)
....+++-|.|. |-+-..|.-..|+--|+.+|+++|+.|+.. ..+|+|.. |+++.+-|.+++|+.
T Consensus 27 ~R~tmVHLFEWK------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~d 99 (504)
T KOG2212|consen 27 GRTTIVHLFEWK------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRD 99 (504)
T ss_pred CcceEEEEEEee------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHHH
Confidence 345578999984 444455566688999999999999998642 34899997 679999999999999
Q ss_pred HHHHHHHcCCEEEEEEeeccccccccC-----CCCCc-----cccCCcCCCCCCCccCCCCCCCC------CCCCCCCC-
Q 003004 579 VVNKFHDVGMKILGDVVLNHRCAHYQN-----QNGVW-----NIFGGRLNWDDRAVVADDPHFQG------RGNKSSGD- 641 (858)
Q Consensus 579 LV~aAH~rGIkVILD~V~NHtg~~~~~-----~~g~w-----~~~~g~~~w~~~~~~~~~p~f~~------~g~~~~~~- 641 (858)
||++|.+-|+||++|+|+|||+....+ ..|.+ ..|.| .+...-.|+. ......+.
T Consensus 100 MV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPG--------VPYs~~DFn~~kc~~~~~~i~~~Nd 171 (504)
T KOG2212|consen 100 MVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPG--------VPYSGWDFNDGKCKTGSGDIENYND 171 (504)
T ss_pred HHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCC--------CCcccccCCCcccCCCccccccccc
Confidence 999999999999999999999863210 00110 01111 1111112221 00000000
Q ss_pred -------CCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccchhHHHHHHHhhc-----------CCeEEEE
Q 003004 642 -------NFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT-----------EPYFAVG 703 (858)
Q Consensus 642 -------~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~~~~i~~i~~~~-----------~p~~liG 703 (858)
-.-+|-|||..+..||..|.+.+.+++ +.||.|||+||++|||++-+..+.... ...|++-
T Consensus 172 a~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~q 250 (504)
T KOG2212|consen 172 ATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIYQ 250 (504)
T ss_pred hhhhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceehh
Confidence 123788999999999999999999999 899999999999999998777665532 1267777
Q ss_pred EeeCCCCcccCCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEcc
Q 003004 704 EYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 783 (858)
Q Consensus 704 E~w~~~~~~~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfl 783 (858)
|+.+-.......-.| . +......|.+...+..++...+.++.....+...+... ..++++|+
T Consensus 251 EVID~GgE~v~~~dY------------~----g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf~~--s~~~L~Fv 312 (504)
T KOG2212|consen 251 EVIDLGGEPIKSSDY------------F----GNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGFMP--SDRALVFV 312 (504)
T ss_pred hhhhcCCceeecccc------------c----CCceeeeeechHHHHHHHhcchhHHHHHhcCCccCcCC--CcceEEEe
Confidence 777632111001111 1 12233444444555556555554444444443333332 24789999
Q ss_pred cCCCCCCCCCC-----CC-CChhHHHHHHHHHHhcC-CceeEech
Q 003004 784 ENHDTGSTQGH-----WR-FPGGREMQGYAYILTHP-GTPSVFYD 821 (858)
Q Consensus 784 eNHDt~R~~s~-----~~-~~~~~~klA~allltlP-GiP~IYYG 821 (858)
+|||+.|-.+. +. .+.+++++|.+|||+.| |+|-|..-
T Consensus 313 DNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSS 357 (504)
T KOG2212|consen 313 DNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSS 357 (504)
T ss_pred ccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhhee
Confidence 99999997654 11 24578999999999999 99987653
No 41
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.77 E-value=3.9e-18 Score=215.87 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=76.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccc
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg 600 (858)
+++|++++++||||++|||++|||+|||++. ++|||++.||+.|||.||+.++|++||++||++||+||||+|+||+|
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 6789999999999999999999999999964 78999999999999999999999999999999999999999999999
Q ss_pred c
Q 003004 601 A 601 (858)
Q Consensus 601 ~ 601 (858)
.
T Consensus 834 ~ 834 (1693)
T PRK14507 834 V 834 (1693)
T ss_pred C
Confidence 5
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=7.1e-16 Score=177.65 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
+|....+.||||++|||.++|++|||.+. |.||||+.|+..|||.+|+.+.|.+|+.++|++||.+|+|+|+|||+..
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 58999999999999999999999999875 7899999999999999999999999999999999999999999999987
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.47 E-value=6.2e-14 Score=173.22 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCC-CCCCCCCCCCccCCCcCCCCC----CHHHHHHHHHHHHHc-CCEEEEEEeec
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPT-ESVSPEGYMPRDLYNLSSRYG----NIDELKDVVNKFHDV-GMKILGDVVLN 597 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIf-es~s~hGYd~~Dy~~IDp~lG----t~edfk~LV~aAH~r-GIkVILD~V~N 597 (858)
|.|....++|+||++||+|+|||+||+ .+.++|.|++.||++|||.|| +.+||++||+++|++ ||++|+|+|+|
T Consensus 129 G~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~N 208 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFN 208 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeec
Confidence 667889999999999999999999999 566899999999999999994 899999999999997 99999999999
Q ss_pred cccccc
Q 003004 598 HRCAHY 603 (858)
Q Consensus 598 Htg~~~ 603 (858)
|||.+|
T Consensus 209 HTa~ds 214 (1464)
T TIGR01531 209 HTANNS 214 (1464)
T ss_pred ccccCC
Confidence 999986
No 44
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=98.79 E-value=1.4e-07 Score=108.65 Aligned_cols=146 Identities=19% Similarity=0.243 Sum_probs=101.8
Q ss_pred cccceeeeeeeccccCCCCCcHHHHHHHHHHHHh---------------CCCCEEEeCCCCCCC----------------
Q 003004 505 GTGFEILCQGFNWESHKSGRWYMELKEKATELSS---------------LGFSVIWLPPPTESV---------------- 553 (858)
Q Consensus 505 ~~~yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~---------------LGVnaI~L~PIfes~---------------- 553 (858)
..+.++++..-+ .+|+|.|+++--..|.+ .|++||+|+||=+..
T Consensus 179 ~nILQiHv~TAs-----p~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~ 253 (811)
T PF14872_consen 179 RNILQIHVGTAS-----PEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIR 253 (811)
T ss_pred ceeEEEecCCCC-----CCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeec
Confidence 346677776432 26888888877776643 699999999984211
Q ss_pred -----------------------------CCCCCCCc--cCCCcCCCC-CC--HHHHHHHHHHHHH---cCCEEEEEEee
Q 003004 554 -----------------------------SPEGYMPR--DLYNLSSRY-GN--IDELKDVVNKFHD---VGMKILGDVVL 596 (858)
Q Consensus 554 -----------------------------s~hGYd~~--Dy~~IDp~l-Gt--~edfk~LV~aAH~---rGIkVILD~V~ 596 (858)
.|||||+. -.-+.+|.+ +| ++|+-.||+.+|. ..|+||+|+|+
T Consensus 254 ~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVy 333 (811)
T PF14872_consen 254 PEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVY 333 (811)
T ss_pred ccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeec
Confidence 25777754 224455532 33 6899999999997 57999999999
Q ss_pred ccccccccC-CCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccE
Q 003004 597 NHRCAHYQN-QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (858)
Q Consensus 597 NHtg~~~~~-~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDG 675 (858)
.|.-..... -++.| +.+. +. ..-|+|+.+|.||+.+.+.-+.=+ ++|+||
T Consensus 334 GHADNQ~~~LLn~~f--------------------lkGP-nM-------YGQdlnhq~P~VRAILLEmQRRK~-n~GaDG 384 (811)
T PF14872_consen 334 GHADNQALDLLNRRF--------------------LKGP-NM-------YGQDLNHQNPVVRAILLEMQRRKI-NTGADG 384 (811)
T ss_pred ccccchhhHhhhhhh--------------------ccCC-cc-------ccccccccChHHHHHHHHHHHhhc-ccCCce
Confidence 998654321 11111 1111 11 123799999999999999888777 899999
Q ss_pred EEeCCcccc
Q 003004 676 WRLDFVRGF 684 (858)
Q Consensus 676 FRlDaa~~~ 684 (858)
+|+|.+..|
T Consensus 385 IRVDGgQDF 393 (811)
T PF14872_consen 385 IRVDGGQDF 393 (811)
T ss_pred eEecccccc
Confidence 999999743
No 45
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.50 E-value=2.6e-07 Score=104.57 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=72.3
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCH------HHHHHHHHHHH-HcCCEEEEEEe
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNI------DELKDVVNKFH-DVGMKILGDVV 595 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~------edfk~LV~aAH-~rGIkVILD~V 595 (858)
|.+..=.++|..++++|+|.|+++|+.+-. |+..|.+.|.+.+||.|... ++++++|.+++ +.||..|.|+|
T Consensus 19 G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 19 GPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred CCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 556677999999999999999999999864 68999999999999987553 69999999995 79999999999
Q ss_pred ecccccccc
Q 003004 596 LNHRCAHYQ 604 (858)
Q Consensus 596 ~NHtg~~~~ 604 (858)
+|||+.++.
T Consensus 99 ~NHtA~nS~ 107 (423)
T PF14701_consen 99 LNHTANNSP 107 (423)
T ss_pred eccCcCCCh
Confidence 999999873
No 46
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.37 E-value=4e-06 Score=97.67 Aligned_cols=184 Identities=22% Similarity=0.314 Sum_probs=112.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHhHh---------ccCccEEEeCCcccchhHHHHHH---Hhh----------cCCe
Q 003004 642 NFHAAPNIDHSQDFVRKDIKEWLCWLRN---------EIGYDGWRLDFVRGFWGGYVKDY---LEA----------TEPY 699 (858)
Q Consensus 642 ~~~~lPdLN~~np~Vr~~i~~~l~~Wl~---------e~GIDGFRlDaa~~~~~~~i~~i---~~~----------~~p~ 699 (858)
.+--..|+|-+||.|+.+...|+.|++. +...||+|+||+..+-.++++.. .++ ....
T Consensus 139 EfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~H 218 (809)
T PF02324_consen 139 EFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKH 218 (809)
T ss_dssp S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC
T ss_pred eeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhh
Confidence 3444568999999999999999999995 67899999999998877655332 221 1346
Q ss_pred EEEEEeeCCCCcccCCCCccchHHHHHHHHHHHhcCCCccccchhhHHHHHHHhhccc-----hhhcccccCCCCCCc--
Q 003004 700 FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCE-----YWRLSDEKGKPPGVV-- 772 (858)
Q Consensus 700 ~liGE~w~~~~~~~G~mnY~~~~~~~~l~~~l~~~~~~~~~fD~~l~~~l~~~l~~~~-----~~~l~~~~~~~~~l~-- 772 (858)
+-|-|.|... =..|++..+...-.+|..++..+...+.... +..+....-..+...
T Consensus 219 lSilE~ws~n-----------------d~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~ 281 (809)
T PF02324_consen 219 LSILEAWSSN-----------------DPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDST 281 (809)
T ss_dssp --EESSSTTT-----------------HHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--
T ss_pred heeeeccccC-----------------ChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCc
Confidence 7788999751 1256666666677788887777776665321 111111000000000
Q ss_pred CCCCCceEEcccCCCCCCCCCC---------------C-----------------------CCChhHHHHHHHHHHh-cC
Q 003004 773 GWWPSRAVTFIENHDTGSTQGH---------------W-----------------------RFPGGREMQGYAYILT-HP 813 (858)
Q Consensus 773 ~~~p~~~vnfleNHDt~R~~s~---------------~-----------------------~~~~~~~klA~alllt-lP 813 (858)
...+.-...|+.+||.. +++. + .+..-.+..+||+||| ..
T Consensus 282 en~a~pNYsFvrAHDse-vQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKD 360 (809)
T PF02324_consen 282 ENEAQPNYSFVRAHDSE-VQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKD 360 (809)
T ss_dssp SSESS-EEEES-BSSTT-THHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SS
T ss_pred CCcccCceeeeecccHH-HHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCC
Confidence 00122357899999976 1110 0 0111346799999999 57
Q ss_pred CceeEechhhH----------HHHHHHHHHHHHHHHhCcc
Q 003004 814 GTPSVFYDHIF----------SHYRQEIEALLSVRKRNKI 843 (858)
Q Consensus 814 GiP~IYYGdE~----------~~l~~~~kkLi~lRk~~pa 843 (858)
.+|.|||||.+ ...++.|..|++.|.++-+
T Consensus 361 TVPRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikYva 400 (809)
T PF02324_consen 361 TVPRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKYVA 400 (809)
T ss_dssp SEEEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH--
T ss_pred CCceEEecccccccchhhhhcCchHHHHHHHHHHHHHhhc
Confidence 99999999988 3689999999999998763
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.04 E-value=3.1e-05 Score=85.87 Aligned_cols=138 Identities=16% Similarity=0.236 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCCCCCCCC--CCCCCCccCCCcCCCCC--CHHHHHHHHHHHHHcCCEEEEEEeecccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s--~hGYd~~Dy~~IDp~lG--t~edfk~LV~aAH~rGIkVILD~V~NHtg 600 (858)
+-+.+.+.|+.|+++|+|+|++-=-..+.. ...+.+...+......+ +-+=|+.+|++||++||+|.-=+.+...+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 357889999999999999999843322211 11122211111111111 36779999999999999999877554433
Q ss_pred ccc---cCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEE
Q 003004 601 AHY---QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (858)
Q Consensus 601 ~~~---~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFR 677 (858)
... ...++.|.... ...|.. .+. .......-||-.+|+||++|++.++..++.|.|||+-
T Consensus 97 ~~~~~~~~~~p~~~~~~-~~~~~~--------~~~--------~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIh 159 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVN-HPGWVR--------TYE--------DANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIH 159 (311)
T ss_pred CchhhhhhcCchhheec-CCCcee--------ecc--------cCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 211 01122221000 000000 000 0011122488899999999999999999999999999
Q ss_pred eC
Q 003004 678 LD 679 (858)
Q Consensus 678 lD 679 (858)
||
T Consensus 160 lD 161 (311)
T PF02638_consen 160 LD 161 (311)
T ss_pred ec
Confidence 99
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.93 E-value=8.6e-05 Score=72.11 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=81.0
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCC
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 609 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~ 609 (858)
.+-+++||++|+|+|-+.-= .....-|-|+......|.++ .+-|+++|++||++||||+.=+-++ .-......+++
T Consensus 3 ~~~~~~lk~~~v~si~i~a~--~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAK--CHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcc--cccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 45688999999999997431 01112255666677889998 7889999999999999999766555 22222234556
Q ss_pred ccccC--CcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCC
Q 003004 610 WNIFG--GRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (858)
Q Consensus 610 w~~~~--g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDa 680 (858)
|...+ |.... ...+. ..+ ...+-.+ ..+++++...++..++.|.+||+=+|+
T Consensus 79 W~~~~~~G~~~~--------~~~~~-------~~~---~~~~c~n-s~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 79 WFVRDADGRPMR--------GERFG-------YPG---WYTCCLN-SPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred eeeECCCCCCcC--------CCCcC-------CCC---ceecCCC-ccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 63321 11000 00000 001 1112222 356689999999999889999998884
No 49
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.70 E-value=4.9e-05 Score=88.89 Aligned_cols=76 Identities=22% Similarity=0.520 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCC---------CCCCCCccCCCcC----CCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVS---------PEGYMPRDLYNLS----SRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s---------~hGYd~~Dy~~ID----p~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
-.-|.+..+-+|++|||..||-|-+.+.. ..||+-+|-|.+- ..||+.+||+..|+++|+.||+||-
T Consensus 586 N~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvia 665 (809)
T PF02324_consen 586 NVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIA 665 (809)
T ss_dssp HHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhh
Confidence 47889999999999999999999998764 4789999988875 6899999999999999999999999
Q ss_pred EEeeccccc
Q 003004 593 DVVLNHRCA 601 (858)
Q Consensus 593 D~V~NHtg~ 601 (858)
|+|++.+-.
T Consensus 666 DwVpdQiYn 674 (809)
T PF02324_consen 666 DWVPDQIYN 674 (809)
T ss_dssp EE-TSEE--
T ss_pred hhchHhhhC
Confidence 999998743
No 50
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.0011 Score=75.43 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCCCCCCCC--CCCCCCcc-C-CCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRD-L-YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s--~hGYd~~D-y-~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg 600 (858)
+=..+.+.||.|+.||||+||..=.-.+.+ ...+.+.- + --+--.-++.+=|..+|++||+|||+|+-=+-+--++
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a 141 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMA 141 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccC
Confidence 345889999999999999999643332211 01111110 0 0000112345678999999999999998776665555
Q ss_pred ccccC---CCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEE
Q 003004 601 AHYQN---QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (858)
Q Consensus 601 ~~~~~---~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFR 677 (858)
..... .+..|..-. ...|. ++...++....=||-.+|+||++|.+.+...++.|.|||.-
T Consensus 142 ~~~s~~~~~~p~~~~~~-~~~~~----------------~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQ 204 (418)
T COG1649 142 PPTSPLTKRHPHWLTTK-RPGWV----------------YVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQ 204 (418)
T ss_pred CCCChhHhhCCCCcccC-CCCeE----------------EEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCcee
Confidence 43210 111111000 00010 01111111233478889999999999999999999999999
Q ss_pred eCCc
Q 003004 678 LDFV 681 (858)
Q Consensus 678 lDaa 681 (858)
||--
T Consensus 205 fDd~ 208 (418)
T COG1649 205 FDDY 208 (418)
T ss_pred ccee
Confidence 9843
No 51
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=97.15 E-value=0.035 Score=65.49 Aligned_cols=44 Identities=14% Similarity=-0.005 Sum_probs=32.9
Q ss_pred CcH-HHHHHHHHHHHhCCCCEEEeCCCCCCC-CCCCCCCccCCCcC
Q 003004 524 RWY-MELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLS 567 (858)
Q Consensus 524 Gdl-~GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~ID 567 (858)
||| +.+.+-+|.+++.|++.|.|+|+.... .+..|.+.+-+.+|
T Consensus 23 GDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~aln 68 (497)
T PRK14508 23 GDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGN 68 (497)
T ss_pred cchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccC
Confidence 888 499999999999999999999998743 23355554444333
No 52
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.0022 Score=76.94 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCC------CHHHHHHHHHHHHH-cCCEEEEEEeec
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYG------NIDELKDVVNKFHD-VGMKILGDVVLN 597 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lG------t~edfk~LV~aAH~-rGIkVILD~V~N 597 (858)
|..-..+|.-+++-|+|.|.++|+.+-. |+.-|...|-..+++.+- +.+|.++||+.+|+ -||--|-|+|+|
T Consensus 141 l~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV~N 220 (1521)
T KOG3625|consen 141 LDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVVYN 220 (1521)
T ss_pred hhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhhhh
Confidence 3444788999999999999999999854 788999999999999886 78999999999986 599999999999
Q ss_pred cccccc
Q 003004 598 HRCAHY 603 (858)
Q Consensus 598 Htg~~~ 603 (858)
||+.++
T Consensus 221 HtAnns 226 (1521)
T KOG3625|consen 221 HTANNS 226 (1521)
T ss_pred ccccCC
Confidence 999974
No 53
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.40 E-value=0.029 Score=62.18 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHhCC--CCEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LG--VnaI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+-+.|.+.++.++++| +++|+|=-=+... . .| +..|+ +|- +.++|++++|++|||+++=+-+ +++.
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~----g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~~ 96 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNWETC--Y----GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FINT 96 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCcccc--C----Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeCC
Confidence 4578889999999999 5688875322110 1 12 34454 555 4899999999999999998877 4544
Q ss_pred cccC-----CCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEE
Q 003004 602 HYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (858)
Q Consensus 602 ~~~~-----~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGF 676 (858)
++.. +.+.|-. +.. ...+ +. ..++. ....-+|+.||++++.+.+.++.++.+.|||||
T Consensus 97 ~s~~~~e~~~~g~~vk-------~~~---g~~~-~~-----~~~w~-g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~ 159 (303)
T cd06592 97 DSENFREAVEKGYLVS-------EPS---GDIP-AL-----TRWWN-GTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSF 159 (303)
T ss_pred CCHHHHhhhhCCeEEE-------CCC---CCCC-cc-----cceec-CCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 3311 1111100 000 0000 00 00010 112247889999999999999998888999999
Q ss_pred EeCCccc
Q 003004 677 RLDFVRG 683 (858)
Q Consensus 677 RlDaa~~ 683 (858)
-+|+...
T Consensus 160 w~D~~E~ 166 (303)
T cd06592 160 KFDAGEA 166 (303)
T ss_pred EeCCCCc
Confidence 9998764
No 54
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.33 E-value=0.021 Score=64.29 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHHHhCCC--CEEEeCCCCCCCC-----CCCCCCcc---CCCcCC-CCC---CHHHHHHHHHHHHHcCCEE
Q 003004 525 WYMELKEKATELSSLGF--SVIWLPPPTESVS-----PEGYMPRD---LYNLSS-RYG---NIDELKDVVNKFHDVGMKI 590 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s-----~hGYd~~D---y~~IDp-~lG---t~edfk~LV~aAH~rGIkV 590 (858)
+-+.+.+-++.+++.|| ++|+|=+-..... +..|...| .+..|+ .|- .-.+.++||+++|++|+||
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 45778888999999886 7898864221111 11221100 001111 111 1126899999999999999
Q ss_pred EEEEeeccccccccCCCCCcccc-----CCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003004 591 LGDVVLNHRCAHYQNQNGVWNIF-----GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 665 (858)
Q Consensus 591 ILD~V~NHtg~~~~~~~g~w~~~-----~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~ 665 (858)
++=+.+ ++..+.......+..+ .+.+..+. ....|... ..|.+ ..--+|+.||++++...+.++
T Consensus 102 ~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~-----~G~~~~~~---~~W~g--~~~~~Dftnp~a~~Ww~~~~~ 170 (340)
T cd06597 102 LLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRG-----VGKPYRIP---GQWFP--DSLMLDFTNPEAAQWWMEKRR 170 (340)
T ss_pred EEEecC-ccccccccccccchhHHHHHHCCEEEEcC-----CCCccccc---cccCC--CceeecCCCHHHHHHHHHHHH
Confidence 985544 2221110000000000 00000000 00000000 01111 122478899999999999999
Q ss_pred HhHhccCccEEEeCCcccc
Q 003004 666 WLRNEIGYDGWRLDFVRGF 684 (858)
Q Consensus 666 ~Wl~e~GIDGFRlDaa~~~ 684 (858)
.+++++|||||.+|+....
T Consensus 171 ~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 171 YLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHHhcCCcEEEecCCCcc
Confidence 9987899999999988643
No 55
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.29 E-value=0.025 Score=62.61 Aligned_cols=133 Identities=17% Similarity=0.098 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHHHhCC--CCEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LG--VnaI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+-+.+.+.++.+++.| +++|||=.=+.. +|.-.| +..|+ +|-. .++|++++|++||+|++-+.+ +++.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCCC
Confidence 4567889999999999 777888654321 122123 55563 6654 689999999999999999876 5655
Q ss_pred cccC----CCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEE
Q 003004 602 HYQN----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (858)
Q Consensus 602 ~~~~----~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFR 677 (858)
++.. ....|.... . +...+.. ..|. ....-+|+.||++++.+.+.++.++ +.|||||-
T Consensus 93 ~~~~~~e~~~~g~~v~~------~-----~g~~~~~----~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~ 154 (308)
T cd06593 93 KSPLFKEAAEKGYLVKK------P-----DGSVWQW----DLWQ--PGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFK 154 (308)
T ss_pred CchhHHHHHHCCeEEEC------C-----CCCeeee----cccC--CCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEe
Confidence 4321 001111000 0 0000000 0011 1123478999999999999999888 69999999
Q ss_pred eCCcccc
Q 003004 678 LDFVRGF 684 (858)
Q Consensus 678 lDaa~~~ 684 (858)
+|....+
T Consensus 155 ~D~~e~~ 161 (308)
T cd06593 155 TDFGERI 161 (308)
T ss_pred cCCCCCC
Confidence 9988643
No 56
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.22 E-value=0.04 Score=63.19 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEe-CCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 526 YMELKEKATELSSLGFSVIWL-PPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L-~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
-+.|.+.++.++++|++.+.| -.-|.......-...|+ .+|+ +|- ..|+.|++.+|++||+.=|=+-+--++.++
T Consensus 57 e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 57 EEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccchh
Confidence 567888889999999998887 33333222111112333 3453 563 359999999999999999999888777766
Q ss_pred cC--CCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCc
Q 003004 604 QN--QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (858)
Q Consensus 604 ~~--~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa 681 (858)
.- .+++|....+ ..+...+ ...--||..+|+|++++.+.+..+++++|||.+.+|+-
T Consensus 134 ~l~~~hPdw~l~~~-----------~~~~~~~----------r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n 192 (394)
T PF02065_consen 134 DLYREHPDWVLRDP-----------GRPPTLG----------RNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFN 192 (394)
T ss_dssp CHCCSSBGGBTCCT-----------TSE-ECB----------TTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-T
T ss_pred HHHHhCccceeecC-----------CCCCcCc----------ccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccc
Confidence 31 2233321100 0000000 01123899999999999999998888999999999987
Q ss_pred c
Q 003004 682 R 682 (858)
Q Consensus 682 ~ 682 (858)
.
T Consensus 193 ~ 193 (394)
T PF02065_consen 193 R 193 (394)
T ss_dssp S
T ss_pred c
Confidence 5
No 57
>PLN02635 disproportionating enzyme
Probab=95.50 E-value=0.13 Score=61.15 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeec
Q 003004 574 DELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 574 edfk~LV~aAH~rGIkVILD~V~N 597 (858)
..++++-+.||++||+||.|+.+-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~ 247 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIY 247 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecc
Confidence 478899999999999999999853
No 58
>PLN02316 synthase/transferase
Probab=95.34 E-value=0.51 Score=60.04 Aligned_cols=225 Identities=12% Similarity=0.197 Sum_probs=111.2
Q ss_pred CCceEEEeeeeecCCCCCCccCCCCCCCCCCcccccccccccccccccCCCceeEEEEeecCCCCceeeEEEEEeCC---
Q 003004 121 PGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEE--- 197 (858)
Q Consensus 121 ~~~~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~--- 197 (858)
..++.||||. ..|.-..+-. .+-+.+. ..+| .+...++.+-....-|.||+-++.
T Consensus 345 ~~~v~i~gg~-------N~W~~~~~~~---------~~~~~~~---~~~g---~ww~a~v~vP~~A~~mDfVFsdg~~~~ 402 (1036)
T PLN02316 345 STEIWIHGGY-------NNWIDGLSIV---------EKLVKSE---EKDG---DWWYAEVVVPERALVLDWVFADGPPGN 402 (1036)
T ss_pred CCcEEEEEeE-------cCCCCCCccc---------ceeeccc---CCCC---CEEEEEEecCCCceEEEEEEecCCccc
Confidence 4459999999 7887654320 1111111 1145 244444555566788999999984
Q ss_pred ccchhhcCCcceeEeCcccccCCCcccccccccccCcchHHHHHHhhhhccCCCCCCCCCCccchhhhhccchhhhhccc
Q 003004 198 TGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWPGALGQLSKMILKADTSQSGIQDSSSESCELKQENKHLEGFYEE 277 (858)
Q Consensus 198 ~~~W~~~~g~df~v~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (858)
.+.|=+|+|.||++++++...+..-.+. .+. -.+++|...-...|.......+.-.. ..-..+.|.++.|--
T Consensus 403 ~~~yDNn~~~Dyh~~v~~~~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~r~k~~~~a~-~~ae~k~~~~~~~l~- 474 (1036)
T PLN02316 403 ARNYDNNGRQDFHAIVPNNIPEELYWVE-EEH-----QIYRKLQEERRLREEAIRAKAEKTAR-MKAEMKEKTLKMFLL- 474 (1036)
T ss_pred ccccccCCCcceeeecCCCCchhhhhHH-HHH-----HHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhh-
Confidence 3479999999999999976533210111 000 12333332211111110000000000 000001122221111
Q ss_pred ccccceeeecceeEEEEeecCCCCc-eEEEEE---c--CCCCCeEEEeeeccCCCCCcccCCCCCCCCceeeeccccccc
Q 003004 278 LPIVKEIIIENTVSVSVRKCPETAK-TLLNLE---T--DLTGDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTL 351 (858)
Q Consensus 278 ~~~~k~~~~~~~~~v~~~~~~~~~~-~~v~~~---t--d~~~~~vlHW~v~~~~~~~W~~pp~~~~p~~~~~~~~a~~Tp 351 (858)
.+.-+-.+....++.|+ +.|.-- | .....|-||||--+ |.-+..+++|-.
T Consensus 475 --------~~~~~~~teP~~~~aG~~v~v~Yn~~~t~l~~~~ev~~~g~~Nr-----Wth~~~~~~~~~----------- 530 (1036)
T PLN02316 475 --------SQKHIVYTEPLEVQAGTTVTVLYNPANTVLNGKPEVWFRGSFNR-----WTHRLGPLPPQK----------- 530 (1036)
T ss_pred --------ccceEEEecCCCCCCCCEEEEEECCCCCcCCCCceEEEEccccC-----cCCCCCCCCcee-----------
Confidence 01111111111112221 111110 1 24458899999887 999877777652
Q ss_pred CcccCCCCcceeEEEe-cCccceeEEEEEcC--CccccccCCCceeeccCCC
Q 003004 352 LQPKEGGKGCSRLFTV-DEEFAGFLFVLKLN--ENTWLKCMENDFYIPLTSS 400 (858)
Q Consensus 352 f~~~~~~~~~~~~~~l-~~~~~g~~fVl~~~--~~~W~k~~g~df~v~l~~~ 400 (858)
+...++|......+++ .+.|+ |=||+-.+ +++|=+++|.||++|...+
T Consensus 531 m~~~~~g~~~~a~v~vP~da~~-mdfvFs~~~~g~~yDn~~~~dyh~~v~g~ 581 (1036)
T PLN02316 531 MVPADNGSHLKATVKVPLDAYM-MDFVFSEKEEGGIFDNRNGLDYHIPVFGG 581 (1036)
T ss_pred eeecCCCceEEEEEEccccceE-EEEEEecCCCCCCcCCCCCcCCcccccCC
Confidence 1222333322334666 44443 78888664 6788888999999999854
No 59
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.34 E-value=0.057 Score=48.69 Aligned_cols=66 Identities=23% Similarity=0.493 Sum_probs=36.3
Q ss_pred eEEEeeeeecCCCCCCccCCCCCCCCCCcccccccccccccccccCCCceeEEEEeecCCCCceeeEEEEEeCCccchhh
Q 003004 124 WILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQ 203 (858)
Q Consensus 124 ~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~ 203 (858)
+.||+|. ..|..+|.- . +.++ +.+-. .| .-..+|.++ +. -..|+||++++ .+.|=+
T Consensus 21 v~~~~G~-------n~W~~~~~~------~--m~~~-~~~~~---~~--~~~~tv~vP-~~-a~~~dfvF~dg-~~~wDN 76 (87)
T PF03423_consen 21 VHLHGGF-------NRWTHVPGF------G--MTKM-CVPDE---GG--WWKATVDVP-ED-AYVMDFVFNDG-AGNWDN 76 (87)
T ss_dssp EEEEETT-------S-B-SSS-E------E---EEE-SS------TT--EEEEEEE---TT-TSEEEEEEE-S-SS-EES
T ss_pred EEEEecC-------CCCCcCCCC------C--ccee-eeeec---CC--EEEEEEEEc-CC-ceEEEEEEcCC-CCcEeC
Confidence 8899998 689766432 1 1111 11111 12 234566665 33 44799999999 448999
Q ss_pred cCCcceeEeC
Q 003004 204 HRGRDFKVPL 213 (858)
Q Consensus 204 ~~g~df~v~l 213 (858)
|+|.||++++
T Consensus 77 N~g~nY~~~V 86 (87)
T PF03423_consen 77 NNGANYHFPV 86 (87)
T ss_dssp TTTS-EEEES
T ss_pred CCCccEEEEc
Confidence 9999999985
No 60
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.12 E-value=0.43 Score=53.17 Aligned_cols=131 Identities=13% Similarity=0.168 Sum_probs=80.8
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCC---CCCccCC--CcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecc
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEG---YMPRDLY--NLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hG---Yd~~Dy~--~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NH 598 (858)
++=..+.+.|+.|++-|+|++-+- --..+| |....-. .+...-....|+++|++.+|++||.+|.=+|.=
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F- 84 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF- 84 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe-
Confidence 344568888999999999999862 112222 2221110 111111114689999999999999999988741
Q ss_pred cccccc--CCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEE
Q 003004 599 RCAHYQ--NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (858)
Q Consensus 599 tg~~~~--~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGF 676 (858)
.|.. ..+++|.... .+-..|.+..+..=+|-.+++||+|++++++... ..|+|.+
T Consensus 85 --kD~~la~~~pe~av~~--------------------~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEI 141 (316)
T PF13200_consen 85 --KDPVLAEAHPEWAVKT--------------------KDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEI 141 (316)
T ss_pred --cChHHhhhChhhEEEC--------------------CCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEE
Confidence 1110 1122231100 0001111222333478888999999999999988 7899999
Q ss_pred EeCCcc
Q 003004 677 RLDFVR 682 (858)
Q Consensus 677 RlDaa~ 682 (858)
-||-+.
T Consensus 142 qfDYIR 147 (316)
T PF13200_consen 142 QFDYIR 147 (316)
T ss_pred Eeeeee
Confidence 999875
No 61
>PLN02316 synthase/transferase
Probab=94.93 E-value=0.42 Score=60.78 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCeEEEEEEecCCCCceEEEEEecC-----CCceEEEeeeeecCCCCCCccCCCCCCCCCCccccccccccccccccc-C
Q 003004 96 EGKMFVRLQKGKDEKNWQLSVGCNI-----PGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLA-E 169 (858)
Q Consensus 96 ~~~~~v~v~~~~~~~~~~v~~~t~~-----~~~~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~-~ 169 (858)
++.+.|.=..-+.+...+|.+-.+. ..++++|=|. ..|...+ .-+.+.++. .
T Consensus 140 ~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-------N~W~~~~---------------f~~~~~k~~~~ 197 (1036)
T PLN02316 140 GNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-------NGWRWKS---------------FTERLEKTELG 197 (1036)
T ss_pred CCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-------ccccccc---------------cceeccccccC
Confidence 4444444444455566777766554 4458899777 6776632 112233333 3
Q ss_pred CCceeEEEEeecCCCCceeeEEEEEeCCccchhhcCCcceeEeCcccc
Q 003004 170 GDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYL 217 (858)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~~~g~df~v~l~~~~ 217 (858)
|+- -..++.++ +....|.||+.++++ .|=||+|.||+++++...
T Consensus 198 g~w-w~~~v~Vp--~~A~~ldfVf~~g~~-~yDNN~~~Df~~~V~~~~ 241 (1036)
T PLN02316 198 GDW-WSCKLHIP--KEAYKMDFVFFNGQN-VYDNNDHKDFCVEIEGGM 241 (1036)
T ss_pred CCe-EEEEEecC--ccceEEEEEEeCCcc-ccccCCCCceEEEeCCCC
Confidence 411 12455555 455559999998855 899999999999997554
No 62
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.89 E-value=0.23 Score=55.36 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhCCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 527 MELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 527 ~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
+.|.+-++.+++.|| ++|||-+=+.......+ . -+..|+ +|- +.++||+++|++|+||++-+.+ +++.++
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~--~-~f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P-~i~~~~ 101 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKR--Y-VFNWNKDRFP---DPAAFVAKFHERGIRLAPNIKP-GLLQDH 101 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCce--e-eeecCcccCC---CHHHHHHHHHHCCCEEEEEeCC-cccCCC
Confidence 567888888888885 78888542211100000 1 144453 444 5789999999999999995544 344332
Q ss_pred cCCCCCcccc--CCcCCCCCCCccCCCCCCCCCCCCCCCCCCCC-CCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCC
Q 003004 604 QNQNGVWNIF--GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (858)
Q Consensus 604 ~~~~g~w~~~--~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~-lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDa 680 (858)
. .|... .+.+.-.. .... +..+..+.+ ..-+|+.||+.++...+.++..+.+.|||||-+|+
T Consensus 102 ~----~y~e~~~~g~~v~~~----~g~~-------~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~ 166 (317)
T cd06599 102 P----RYKELKEAGAFIKPP----DGRE-------PSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDN 166 (317)
T ss_pred H----HHHHHHHCCcEEEcC----CCCC-------cceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecC
Confidence 1 11000 00000000 0000 000111111 12378889999999999885554489999999998
Q ss_pred cc
Q 003004 681 VR 682 (858)
Q Consensus 681 a~ 682 (858)
..
T Consensus 167 ~E 168 (317)
T cd06599 167 NE 168 (317)
T ss_pred CC
Confidence 76
No 63
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=94.75 E-value=0.13 Score=61.45 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCCCCC-CCCCCCCCC----ccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPPPTE-SVSPEGYMP----RDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfe-s~s~hGYd~----~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHt 599 (858)
......+.|+.|+.+-||+|++==.+- +...-+-.. ..|..+--+-=..+..|++|++||+.||+.|.=.-+.-.
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 577889999999999999999732211 000000000 011111112223578999999999999999975444322
Q ss_pred ccccc--CCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCC-CCCCCCCcHHHHHHHHHHHHHhHhccCccEE
Q 003004 600 CAHYQ--NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (858)
Q Consensus 600 g~~~~--~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~-lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGF 676 (858)
..+.. .-...|..|.... . ..+ ..+.....+.. +--+|..|+.-|++|.+-+...++.+|+|||
T Consensus 196 ~~~~~~~gv~~eW~ly~d~~------~----~~~---~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~ 262 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLYKDDS------H----SNQ---DTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGW 262 (559)
T ss_dssp ETT--S--SS-GGBEEESSS------B----TSB----EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EE
T ss_pred ccCcccccCCchhhhhhccC------C----Ccc---ceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceE
Confidence 22211 1122343322110 0 000 00000011111 2346788999999999999999989999999
Q ss_pred EeCCcc
Q 003004 677 RLDFVR 682 (858)
Q Consensus 677 RlDaa~ 682 (858)
-+|...
T Consensus 263 hlDq~G 268 (559)
T PF13199_consen 263 HLDQLG 268 (559)
T ss_dssp EEE-S-
T ss_pred eeeccC
Confidence 999874
No 64
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=94.02 E-value=0.085 Score=58.88 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHHhCCC--CEEEeCCCCCC--CCCCCCCC-ccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeecc
Q 003004 525 WYMELKEKATELSSLGF--SVIWLPPPTES--VSPEGYMP-RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes--~s~hGYd~-~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NH 598 (858)
.-+.+.+-++.+++.|| ++|||- .+.. ....||.. .| +..|+ +|- +.++||+++|++|+|||+-+. .+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-PY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-Cc
Confidence 56788999999988765 678885 3311 01112210 11 34554 443 578999999999999999554 45
Q ss_pred ccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCC-CCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEE
Q 003004 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (858)
Q Consensus 599 tg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~-~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFR 677 (858)
+..++... |.. .....+ ...+ ..+..+.+..+ ....-+|+.||+.++...+.++..+.+.|||||-
T Consensus 95 v~~~~~~~---y~~-~~~~g~----~vk~-----~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w 161 (317)
T cd06594 95 LADDGPLY---YEE-AKDAGY----LVKD-----ADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWM 161 (317)
T ss_pred eecCCchh---HHH-HHHCCe----EEEC-----CCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEE
Confidence 54432110 100 000000 0000 00000101001 1123478899999999999888775589999999
Q ss_pred eCCccc
Q 003004 678 LDFVRG 683 (858)
Q Consensus 678 lDaa~~ 683 (858)
+|+...
T Consensus 162 ~D~~E~ 167 (317)
T cd06594 162 ADFGEY 167 (317)
T ss_pred ecCCCC
Confidence 997653
No 65
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=93.56 E-value=0.11 Score=57.94 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHHhC--CCCEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSL--GFSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~L--GVnaI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+-+.+.+-++.+++. -+++|+|=-- .....++ . -+..|+ +|- +.++||+++|++|+|||+-+. .+++.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~~~~~~--~-~f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~-P~v~~ 92 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWF--YWPKQGW--G-EWKFDPERFP---DPKAMVRELHEMNAELMISIW-PTFGP 92 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEech--hhcCCCc--e-eEEEChhhCC---CHHHHHHHHHHCCCEEEEEec-CCcCC
Confidence 456677778877776 5678887411 1111221 1 244454 454 467899999999999999554 44544
Q ss_pred cccCCCCCcccc--CCcCCCCCCCccCCCCCCCCCCC-CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEe
Q 003004 602 HYQNQNGVWNIF--GGRLNWDDRAVVADDPHFQGRGN-KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (858)
Q Consensus 602 ~~~~~~g~w~~~--~g~~~w~~~~~~~~~p~f~~~g~-~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRl 678 (858)
++. .|... .+.+..+. .+. +..+|. ....-+|+.||+.++...+.++..+.+.|||||-+
T Consensus 93 ~~~----~y~e~~~~g~~v~~~------------~g~~~~~~w~-g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~ 155 (319)
T cd06591 93 ETE----NYKEMDEKGYLIKTD------------RGPRVTMQFG-GNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWL 155 (319)
T ss_pred CCh----hHHHHHHCCEEEEcC------------CCCeeeeeCC-CCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEe
Confidence 331 11000 00000000 000 000110 11234788999999988776654333899999999
Q ss_pred CCccc
Q 003004 679 DFVRG 683 (858)
Q Consensus 679 Daa~~ 683 (858)
|+...
T Consensus 156 D~~Ep 160 (319)
T cd06591 156 DAAEP 160 (319)
T ss_pred cCCCC
Confidence 99873
No 66
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=93.28 E-value=0.14 Score=57.25 Aligned_cols=133 Identities=18% Similarity=0.181 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHhCCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+-+.+.+-++.+++.|| ++|||-.=+- .+|. .+..|+ +|- +.++||+++|++|+||++=+.+ +++.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P-~i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDP-GIRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeec-cccC
Confidence 45677888888887765 7788753221 1221 233444 343 5689999999999999996644 3433
Q ss_pred cccCCCCCccc--cCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCC-CCCCCCCcHHHHHHHHHHHHHhHhccCccEEEe
Q 003004 602 HYQNQNGVWNI--FGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (858)
Q Consensus 602 ~~~~~~g~w~~--~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~-lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRl 678 (858)
+.. +..|.. -.+.+. .. ..+....+..+.+ ..-+|+.||+.++...+.++..+.+.|||||-+
T Consensus 91 ~~~--~~~~~~~~~~~~~v-------~~-----~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~ 156 (317)
T cd06600 91 DQN--YSPFLSGMDKGKFC-------EI-----ESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWL 156 (317)
T ss_pred CCC--ChHHHHHHHCCEEE-------EC-----CCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEe
Confidence 211 001100 000000 00 0000000000111 123688999999999999988877899999999
Q ss_pred CCcc
Q 003004 679 DFVR 682 (858)
Q Consensus 679 Daa~ 682 (858)
|+..
T Consensus 157 D~~E 160 (317)
T cd06600 157 DMNE 160 (317)
T ss_pred eCCC
Confidence 9886
No 67
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=92.84 E-value=0.19 Score=53.97 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=49.7
Q ss_pred ceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC--CCCCCCccCCCcCCCCCCHHHHHHHHHHHHH
Q 003004 508 FEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (858)
Q Consensus 508 yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s--~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~ 585 (858)
.++..++|++.. .... -+.+-++.|+++|+|+|=|.-.++... ..+| .+++ ...+.|+++|++|++
T Consensus 6 ~~v~~~G~n~~w---~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~~ 73 (281)
T PF00150_consen 6 KPVNWRGFNTHW---YNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQA 73 (281)
T ss_dssp EBEEEEEEEETT---SGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHHH
T ss_pred CeEEeeeeeccc---CCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHHh
Confidence 455666666330 1111 578889999999999999866532111 1111 1111 235789999999999
Q ss_pred cCCEEEEEEee
Q 003004 586 VGMKILGDVVL 596 (858)
Q Consensus 586 rGIkVILD~V~ 596 (858)
+||+||+|+--
T Consensus 74 ~gi~vild~h~ 84 (281)
T PF00150_consen 74 YGIYVILDLHN 84 (281)
T ss_dssp TT-EEEEEEEE
T ss_pred CCCeEEEEecc
Confidence 99999999843
No 68
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=92.83 E-value=0.5 Score=47.82 Aligned_cols=68 Identities=15% Similarity=0.256 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeec
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~N 597 (858)
.=.+.+.+++++|+++|.|. ..+-...-+.+.++..-.-..+..+-+..+.++|.+.||+|++-+-++
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 34789999999999999987 111111222334332112223667889999999999999999988655
No 69
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=92.66 E-value=1.3 Score=58.13 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=34.3
Q ss_pred ceeeeeeeccccCC-CC-CcHHHHHHHHHHHHhCCCCEEEeCCCCC
Q 003004 508 FEILCQGFNWESHK-SG-RWYMELKEKATELSSLGFSVIWLPPPTE 551 (858)
Q Consensus 508 yei~~~~F~Wd~~~-~G-Gdl~GI~ekLdYLk~LGVnaI~L~PIfe 551 (858)
-++.+|-|.--+.. -| |||..+.+-++.+++.|.+.|.|+|+..
T Consensus 725 ~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~ 770 (1221)
T PRK14510 725 CGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHP 770 (1221)
T ss_pred eEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45566666544322 25 8999999999999999999999999875
No 70
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=92.50 E-value=0.31 Score=54.95 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHH--HHHHHHHHHcCCEEEEEEeecccc
Q 003004 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDEL--KDVVNKFHDVGMKILGDVVLNHRC 600 (858)
Q Consensus 526 l~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edf--k~LV~aAH~rGIkVILD~V~NHtg 600 (858)
-+.+.+.++.+++.|| ++|||-.-+-. +|. -+..|+ +|- +. ++||+++|++|+||++=+.+ |+.
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~---~f~~d~~~FP---dp~~~~mi~~L~~~G~k~~~~i~P-~v~ 91 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR---DFTLDPVRFP---GLKMPEFVDELHANGQHYVPILDP-AIS 91 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECccccc----Ccc---ceecccccCC---CccHHHHHHHHHHCCCEEEEEEeC-ccc
Confidence 4677888888888765 67887432211 111 123333 232 34 99999999999999997653 333
Q ss_pred ccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCC---CCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEE
Q 003004 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKS---SGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (858)
Q Consensus 601 ~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~---~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFR 677 (858)
.+.. ...+..+.....-. ..+. ...+..+ .+.+.. .-+|+.||++++...+.++.++.+.|||||-
T Consensus 92 ~~~~--~~~~~~~~e~~~~g--~~v~-----~~~g~~~~~~~w~g~~--~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w 160 (339)
T cd06602 92 ANEP--TGSYPPYDRGLEMD--VFIK-----NDDGSPYIGKVWPGYT--VFPDFLNPNTQEWWTDEIKDFHDQVPFDGLW 160 (339)
T ss_pred cCcC--CCCCHHHHHHHHCC--eEEE-----CCCCCEEEEEeCCCCC--cCcCCCCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 3210 01111110000000 0000 0001100 011111 2368889999999999999888678999999
Q ss_pred eCCcc
Q 003004 678 LDFVR 682 (858)
Q Consensus 678 lDaa~ 682 (858)
+|...
T Consensus 161 ~D~~E 165 (339)
T cd06602 161 IDMNE 165 (339)
T ss_pred ecCCC
Confidence 99876
No 71
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=92.40 E-value=0.33 Score=57.58 Aligned_cols=177 Identities=15% Similarity=0.233 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeeccccccccC--CCCCccccCCcCCCCCCCccCCCC-CCCCCCCCCCCCCCCCCCCCC
Q 003004 574 DELKDVVNKFHDVGMKILGDVVLNHRCAHYQN--QNGVWNIFGGRLNWDDRAVVADDP-HFQGRGNKSSGDNFHAAPNID 650 (858)
Q Consensus 574 edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~--~~g~w~~~~g~~~w~~~~~~~~~p-~f~~~g~~~~~~~~~~lPdLN 650 (858)
+.++++.+.|+++||+||.|+.+- ++.++.+ .+...+..+ ......| .|...| ..| ++|-.|
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig-v~~dsaDvW~~~~lF~~~--------~~aGaPPD~fs~~G-----Q~W-G~P~y~ 256 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG-VSPDSADVWANPELFLLD--------ASAGAPPDYFSPTG-----QNW-GNPPYN 256 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS---SSSHHHHH-GGGB-B---------EEEEE-SSSSSSS------EEE-EEE-B-
T ss_pred HHHHHHHHHHHHCCCEEEEeccce-ECCCcHHHHhCHHHHhCc--------CeeCCCCCCCCccc-----ccC-CCCCcC
Confidence 579999999999999999999864 3333211 011111000 0000001 222222 112 244444
Q ss_pred CCcHHH--HHHHHHHHHHhHhccCccEEEeCCcccc----------------------hhHHHHHHHhhcC-CeEEEEEe
Q 003004 651 HSQDFV--RKDIKEWLCWLRNEIGYDGWRLDFVRGF----------------------WGGYVKDYLEATE-PYFAVGEY 705 (858)
Q Consensus 651 ~~np~V--r~~i~~~l~~Wl~e~GIDGFRlDaa~~~----------------------~~~~i~~i~~~~~-p~~liGE~ 705 (858)
+..=.- -+.+++-+++-+ ..+|+.|||.+..| ..++++.+..+.. .+.+|||.
T Consensus 257 w~~l~~~gy~ww~~rl~~~~--~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~~r~~~vigED 334 (496)
T PF02446_consen 257 WDALKEDGYRWWIDRLRANM--RLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALESGRDCLVIGED 334 (496)
T ss_dssp HHHHHHTTTHHHHHHHHHHH--CC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHHS-S-EEEE--
T ss_pred HHHHHHcCCHHHHHHHHHHH--HhCCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHcCCCCcEEEee
Confidence 211000 012344455554 47899999999744 2245666666666 79999999
Q ss_pred eCCCCcccCCCCccchHHHHHHHHHHHhcCCC-ccccchhhHHHHHHHhhccchhhcccccCCCCCCcCCCCCceEEccc
Q 003004 706 WDSLSYTYGEMDHNQDAHRQRIIDWINAASGT-AGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 784 (858)
Q Consensus 706 w~~~~~~~G~mnY~~~~~~~~l~~~l~~~~~~-~~~fD~~l~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~p~~~vnfle 784 (858)
.+. ....+...+...+.. ..++-|.. ....+ ....-..++...|.+++
T Consensus 335 LG~--------------vp~~v~~~l~~~gi~g~~Vl~f~~----------------~~~~~-~~~~P~~~~~~sva~~~ 383 (496)
T PF02446_consen 335 LGT--------------VPPEVRELLAELGIPGMRVLQFEF----------------DEDDG-NFYLPHNYPENSVAYTG 383 (496)
T ss_dssp TSS----------------HHHHHHHHHTT--EEEEGGGSS----------------SSSTT--TTSGGGSTSSEEEESS
T ss_pred cCC--------------CcHHHHHHHHHcCCCceEEEEecC----------------CCCCC-CCCCcccCCCccEeeCC
Confidence 864 223444444433311 11222110 00000 01111224678899999
Q ss_pred CCCCCCCCCCCCCC
Q 003004 785 NHDTGSTQGHWRFP 798 (858)
Q Consensus 785 NHDt~R~~s~~~~~ 798 (858)
+||++.+..-|...
T Consensus 384 THD~~Tl~gww~~~ 397 (496)
T PF02446_consen 384 THDNPTLRGWWEGE 397 (496)
T ss_dssp -TTS--HHHHHHCS
T ss_pred CCCCHHHHHHHhCC
Confidence 99999876655443
No 72
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=92.25 E-value=0.44 Score=53.46 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeec
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~N 597 (858)
.+.++.||+.|+|+|=|=- +..|.. .-+-+.++..+|.++|++.||+|+||+=+.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~------------~g~~~~~~~~~~akrak~~Gm~vlldfHYS 81 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYS 81 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SS
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc------------cccCCHHHHHHHHHHHHHCCCeEEEeeccc
Confidence 5678999999999987733 211111 344468899999999999999999999443
No 73
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=92.07 E-value=1.2 Score=54.87 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCC--EEEEEEeec
Q 003004 574 DELKDVVNKFHDVGM--KILGDVVLN 597 (858)
Q Consensus 574 edfk~LV~aAH~rGI--kVILD~V~N 597 (858)
+.++++-+.|+++|| .||.|+-+-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvg 380 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVG 380 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeece
Confidence 478889999999999 679999874
No 74
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=91.30 E-value=1.4 Score=52.44 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeec
Q 003004 574 DELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 574 edfk~LV~aAH~rGIkVILD~V~N 597 (858)
+.++++-+.|+.+||+||.|+.+-
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce
Confidence 468889999999999999999874
No 75
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=90.43 E-value=1.8 Score=52.93 Aligned_cols=127 Identities=11% Similarity=0.101 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCC----CCCCCccCCCc-CCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccc
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSP----EGYMPRDLYNL-SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~----hGYd~~Dy~~I-Dp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg 600 (858)
-+.+...||.|+++|+|+|||-..-...++ .-|-|.++.-+ ++-|. .-.++ -+|++|++|..=+-+=-.+
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-~~aw~----l~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-RVAWQ----LRTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-HHHHH----HHHhhCCEEEEeccceeec
Confidence 578899999999999999999765443332 23555544443 12222 11222 2999999997655332111
Q ss_pred ccccCCCCCccccCCcCCCCCCCccCCCC-CCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeC
Q 003004 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDP-HFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (858)
Q Consensus 601 ~~~~~~~g~w~~~~g~~~w~~~~~~~~~p-~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlD 679 (858)
-....+.. ..+... ..+ ..+. .+ ...|+-.+|+||+.|.++..-+.+.+.|||+-+|
T Consensus 408 ~~~~~~~~--------~~~~~~----~~~~~~~~--------~~--~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~ 465 (671)
T PRK14582 408 LDPTLPRV--------KRLDTG----EGKAQIHP--------EQ--YRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFH 465 (671)
T ss_pred cCCCcchh--------hhcccc----CCccccCC--------CC--CcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEec
Confidence 10000000 000000 000 0000 00 1238888999999999999999988899999885
No 76
>PRK10426 alpha-glucosidase; Provisional
Probab=90.19 E-value=0.7 Score=56.43 Aligned_cols=132 Identities=18% Similarity=0.297 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhCC--CCEEEeCCCCCCC--CCCCCCC-ccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeecccc
Q 003004 527 MELKEKATELSSLG--FSVIWLPPPTESV--SPEGYMP-RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (858)
Q Consensus 527 ~GI~ekLdYLk~LG--VnaI~L~PIfes~--s~hGYd~-~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg 600 (858)
+.+.+.++.+++.| +++|||- -+... .+.|+.. .| +..|+ +| -+.++||+++|++|+||++=+-+- +.
T Consensus 221 ~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~F---Pdp~~mi~~L~~~G~k~v~~i~P~-v~ 294 (635)
T PRK10426 221 EVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERY---PQLDSRIKQLNEEGIQFLGYINPY-LA 294 (635)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhC---CCHHHHHHHHHHCCCEEEEEEcCc-cC
Confidence 56788888899888 6899984 22110 0111100 01 12332 22 257899999999999999886553 33
Q ss_pred cccc-----CCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccE
Q 003004 601 AHYQ-----NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (858)
Q Consensus 601 ~~~~-----~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDG 675 (858)
.++. ..++.+-. +. +...|.. ..|.+... -+|+.||++|+...+.++..+.+.||||
T Consensus 295 ~~~~~y~e~~~~gy~vk-------~~-----~g~~~~~----~~~~~~~~--~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg 356 (635)
T PRK10426 295 SDGDLCEEAAEKGYLAK-------DA-----DGGDYLV----EFGEFYAG--VVDLTNPEAYEWFKEVIKKNMIGLGCSG 356 (635)
T ss_pred CCCHHHHHHHHCCcEEE-------CC-----CCCEEEe----EecCCCce--eecCCCHHHHHHHHHHHHHHHhhcCCCE
Confidence 2221 01111100 00 0000100 00111112 3688999999999888864444899999
Q ss_pred EEeCCcc
Q 003004 676 WRLDFVR 682 (858)
Q Consensus 676 FRlDaa~ 682 (858)
|-.|+..
T Consensus 357 ~w~D~~E 363 (635)
T PRK10426 357 WMADFGE 363 (635)
T ss_pred EeeeCCC
Confidence 9999754
No 77
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=90.18 E-value=0.44 Score=53.66 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 526 l~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
-+.+.+.++.+++.|| ++|||-.-+.. +|. + +..|+ +|- +.++|++++|++|+||++=+.+ |+..+
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~~ 91 (339)
T cd06604 23 EEEVREIADEFRERDIPCDAIYLDIDYMD----GYR--V-FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKVD 91 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECchhhC----CCC--c-eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeCC
Confidence 4677888888988875 78888644321 222 1 34454 454 4689999999999999987654 33321
Q ss_pred ccCCCCCccc--cCCcCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeC
Q 003004 603 YQNQNGVWNI--FGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (858)
Q Consensus 603 ~~~~~g~w~~--~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~-~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlD 679 (858)
.. +..|.. -.|.+.-. ..+..+.+..+. ..--+|+.||+.++...+.++..+ +.|||||-+|
T Consensus 92 ~~--~~~~~e~~~~g~~v~~------------~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D 156 (339)
T cd06604 92 PG--YDVYEEGLENDYFVKD------------PDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWND 156 (339)
T ss_pred CC--ChHHHHHHHCCeEEEC------------CCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEeec
Confidence 10 001100 00000000 000000000111 111368889999999999998888 8999999999
Q ss_pred Ccc
Q 003004 680 FVR 682 (858)
Q Consensus 680 aa~ 682 (858)
+..
T Consensus 157 ~~E 159 (339)
T cd06604 157 MNE 159 (339)
T ss_pred CCC
Confidence 875
No 78
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=89.86 E-value=0.54 Score=54.68 Aligned_cols=136 Identities=25% Similarity=0.353 Sum_probs=73.6
Q ss_pred cHHHHHHHHHHHHhCCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+-+.+.+-++.+++.|| ++|+|-.-+.. +|. | +..|+ +|- ++++|++.+|++|+||++-+.+ ++..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-ccCC
Confidence 35677888888888765 56666544322 111 2 34443 333 7899999999999999999887 3443
Q ss_pred cccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCC
Q 003004 602 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (858)
Q Consensus 602 ~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~-~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDa 680 (858)
+.. ....|.... ...+- .. ...+..+.+..+. ...-+|+.||++++.+.+.++.+++.+|||||-+|.
T Consensus 110 ~~~-~~~~~~~~~-~~~~~----v~-----~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~ 178 (441)
T PF01055_consen 110 DSP-DYENYDEAK-EKGYL----VK-----NPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDF 178 (441)
T ss_dssp TTT-B-HHHHHHH-HTT-B----EB-----CTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEES
T ss_pred CCC-cchhhhhHh-hcCce----ee-----cccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeec
Confidence 321 000000000 00000 00 0001001111111 123478899999999999999999777999999999
Q ss_pred cc
Q 003004 681 VR 682 (858)
Q Consensus 681 a~ 682 (858)
..
T Consensus 179 ~E 180 (441)
T PF01055_consen 179 GE 180 (441)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 79
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=89.36 E-value=0.68 Score=51.29 Aligned_cols=57 Identities=14% Similarity=0.210 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEee
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~ 596 (858)
....++-|+...+.|++-|..+=.......+ +-..-|++|+++||+.||+||+|+-+
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred chhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 3445777788889999999865433222211 12356999999999999999999944
No 80
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=88.96 E-value=7.2 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeec
Q 003004 574 DELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 574 edfk~LV~aAH~rGIkVILD~V~N 597 (858)
+.++++-+-|+++||.||.|+.+.
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~ 233 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVG 233 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccce
Confidence 467777778888999999999876
No 81
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=88.66 E-value=1 Score=50.36 Aligned_cols=135 Identities=12% Similarity=0.030 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhCC--CCEEEeCCCCCC-CC-CCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeecccc
Q 003004 526 YMELKEKATELSSLG--FSVIWLPPPTES-VS-PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (858)
Q Consensus 526 l~GI~ekLdYLk~LG--VnaI~L~PIfes-~s-~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg 600 (858)
-+.+.+.++.+++.| +++|+|-.=+-. .. ...|. | +..|+ +|- +.++||+++|++|+||++=+.+ +++
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~v~P-~v~ 95 (317)
T cd06598 23 WQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP---DPAGMIADLAKKGVKTIVITEP-FVL 95 (317)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC---CHHHHHHHHHHcCCcEEEEEcC-ccc
Confidence 467788888888877 478887542211 00 01111 1 33443 554 4578999999999999998753 333
Q ss_pred ccccCCCCCccc--cCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEe
Q 003004 601 AHYQNQNGVWNI--FGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (858)
Q Consensus 601 ~~~~~~~g~w~~--~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRl 678 (858)
.++. .|.. -.|.+.-+. .....+. + ..+.+... -+|+.||+.++...+.++.++ +.|||||-+
T Consensus 96 ~~~~----~y~e~~~~g~l~~~~----~~~~~~~--~--~~w~g~~~--~~Dftnp~a~~w~~~~~~~~~-~~Gvdg~w~ 160 (317)
T cd06598 96 KNSK----NWGEAVKAGALLKKD----QGGVPTL--F--DFWFGNTG--LIDWFDPAAQAWFHDNYKKLI-DQGVTGWWG 160 (317)
T ss_pred CCch----hHHHHHhCCCEEEEC----CCCCEee--e--eccCCCcc--ccCCCCHHHHHHHHHHHHHhh-hCCccEEEe
Confidence 3321 1100 000000000 0000000 0 00111112 357789999999999888886 899999999
Q ss_pred CCcc
Q 003004 679 DFVR 682 (858)
Q Consensus 679 Daa~ 682 (858)
|+..
T Consensus 161 D~~E 164 (317)
T cd06598 161 DLGE 164 (317)
T ss_pred cCCC
Confidence 9875
No 82
>PRK10658 putative alpha-glucosidase; Provisional
Probab=88.36 E-value=0.94 Score=55.58 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhCCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 527 MELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 527 ~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
+.+.+-++.+++.|| ++|+|-..+- .+|.-.| +..|+ +|- +.++||+++|++|+||++=+.+ +.+.++
T Consensus 283 ~~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~s 353 (665)
T PRK10658 283 ATVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQKS 353 (665)
T ss_pred HHHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCCc
Confidence 456666777777665 5677654221 1121122 33343 333 4678999999999999987655 344332
Q ss_pred cC-----CCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCC-CCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEE
Q 003004 604 QN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (858)
Q Consensus 604 ~~-----~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~-~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFR 677 (858)
.. +++.+-. . ..|..+.+..| ....-+|+.||++|+...+.++.++ +.|||||-
T Consensus 354 ~~f~e~~~~gy~vk-~------------------~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgfw 413 (665)
T PRK10658 354 PLFKEGKEKGYLLK-R------------------PDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCFK 413 (665)
T ss_pred hHHHHHHHCCeEEE-C------------------CCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEEE
Confidence 10 1111100 0 00111111111 1122478899999999999999988 79999999
Q ss_pred eCCcc
Q 003004 678 LDFVR 682 (858)
Q Consensus 678 lDaa~ 682 (858)
.|...
T Consensus 414 ~D~gE 418 (665)
T PRK10658 414 TDFGE 418 (665)
T ss_pred ecCCc
Confidence 99654
No 83
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=88.33 E-value=0.78 Score=50.58 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHHHhCC--CCEEEeCCCCCC-CCCCCCC-CccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccc
Q 003004 525 WYMELKEKATELSSLG--FSVIWLPPPTES-VSPEGYM-PRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (858)
Q Consensus 525 dl~GI~ekLdYLk~LG--VnaI~L~PIfes-~s~hGYd-~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHt 599 (858)
+.+.+.+-++.+++.| +++|||=-=+.. .....|. -.--+..|+ +|- +.++||+++|++|+|||+-+.+..
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~P~~- 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLHPAD- 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCC---CHHHHHHHHHHCCCEEEEEeCCCc-
Confidence 3567777778777755 477877321111 0000010 001244554 553 568999999999999999887642
Q ss_pred cccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeC
Q 003004 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (858)
Q Consensus 600 g~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlD 679 (858)
+.+. ....|..+..... . .... ....-+|+.||+.++...+.+..-+.+.|||||=.|
T Consensus 99 ~~~~--~~~~y~~~~~~~~------------~----~~~~----~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D 156 (292)
T cd06595 99 GIRA--HEDQYPEMAKALG------------V----DPAT----EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLD 156 (292)
T ss_pred ccCC--CcHHHHHHHHhcC------------C----Cccc----CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEec
Confidence 2110 0001111100000 0 0000 011236888999888665555433348999999999
Q ss_pred Ccc
Q 003004 680 FVR 682 (858)
Q Consensus 680 aa~ 682 (858)
+..
T Consensus 157 ~~E 159 (292)
T cd06595 157 WQQ 159 (292)
T ss_pred CCC
Confidence 654
No 84
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=86.56 E-value=1.4 Score=54.82 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCEEEEEEeecccccccc-----CCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCCC
Q 003004 576 LKDVVNKFHDVGMKILGDVVLNHRCAHYQ-----NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNI 649 (858)
Q Consensus 576 fk~LV~aAH~rGIkVILD~V~NHtg~~~~-----~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~-~lPdL 649 (858)
.++|++..|++|||+|+=+-+.= ..++. ..+|.+-+. ..|..+.+.+|. ...-+
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i-~~d~~~~~e~~~~Gy~~k~-------------------~~g~~~~~~~w~~~~a~~ 382 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYI-KQDSPLFKEAIEKGYFVKD-------------------PDGEIYQADFWPGNSAFP 382 (772)
T ss_pred HHHHHHHHHhcCceEEEEecccc-ccCCchHHHHHHCCeEEEC-------------------CCCCEeeecccCCccccc
Confidence 44999999999999998876642 22221 011111000 012222233333 23346
Q ss_pred CCCcHHHHHHHHH-HHHHhHhccCccEEEeCCcc
Q 003004 650 DHSQDFVRKDIKE-WLCWLRNEIGYDGWRLDFVR 682 (858)
Q Consensus 650 N~~np~Vr~~i~~-~l~~Wl~e~GIDGFRlDaa~ 682 (858)
|+.||++|+...+ ....++ ++|||||-.|+..
T Consensus 383 DFtnp~~r~Ww~~~~~~~l~-d~Gv~g~W~D~nE 415 (772)
T COG1501 383 DFTNPDAREWWASDKKKNLL-DLGVDGFWNDMNE 415 (772)
T ss_pred CCCCHHHHHHHHHHHHhHHH-hcCccEEEccCCC
Confidence 8899999999994 556787 8999999999885
No 85
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=86.48 E-value=4.4 Score=44.34 Aligned_cols=66 Identities=14% Similarity=-0.009 Sum_probs=43.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~ 594 (858)
|-+++....-+|+-+++|+..+.+-=-+.. ...=...|+....+. .++++||+-|+++|++|+|=.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~--~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYG--WEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCG--S--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecccccc--ccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEE
Confidence 568999999999999999999998221111 011134555555554 789999999999999998855
No 86
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=86.30 E-value=0.7 Score=52.42 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeec
Q 003004 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~N 597 (858)
++....+-|.-.+++|++.|+.+=...- +..=...+.|++|++.||++||+||+|+-+.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe--------------~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPE--------------DDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCC--------------CCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 4677788888889999999997521110 0001125789999999999999999999554
No 87
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=86.11 E-value=3.7 Score=53.61 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHHHhHhccCccEEEeCCcccc----hhHHHHHHHhhcCC-eEEEEEeeCC
Q 003004 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF----WGGYVKDYLEATEP-YFAVGEYWDS 708 (858)
Q Consensus 652 ~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~----~~~~i~~i~~~~~p-~~liGE~w~~ 708 (858)
.||.++++|.+..+-..+ =.+|||||.++.. -.-++++ .+.++| .++++|-+.+
T Consensus 487 DsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlhVaeylLd~-AR~vnPnLyV~AELFTG 545 (1464)
T TIGR01531 487 DSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIHVAEYLLDA-ARKYNPNLYVVAELFTG 545 (1464)
T ss_pred CCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHHHHHHHHHH-HhhcCCCeEEEeeecCC
Confidence 579999999999988873 6899999999944 4444444 334455 9999999986
No 88
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=85.64 E-value=5.4 Score=43.30 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHHHhCC--CCEEEeCCCCCCCCCCCCCCccC-CCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEE
Q 003004 524 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDL-YNLSS-RYGNIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LG--VnaI~L~PIfes~s~hGYd~~Dy-~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~ 594 (858)
.+-+.+.+.++.+++.| +++|+|-.-+.... .++ +..|+ +|- +.++||+++|++|+||++-+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~------~~f~~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~ 86 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGY------GDFTFDWDAGKFP---NPKSMIDELHDNGVKLVLWI 86 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccCC------ceeeeecChhhCC---CHHHHHHHHHHCCCEEEEEe
Confidence 44577888888888855 56899876543321 111 24443 454 46889999999999999866
No 89
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=85.19 E-value=2.5 Score=45.37 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003004 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (858)
Q Consensus 572 t~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~ 651 (858)
+.+.+++.+..+|++|+||++=+--+|.+..+ -..
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~---------------------------------------------~~~ 83 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF---------------------------------------------ANN 83 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc---------------------------------------------ccc
Confidence 46889999999999999999887544332110 001
Q ss_pred CcHHHHHHHHHHHHHhHhccCccEEEeCCc
Q 003004 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (858)
Q Consensus 652 ~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa 681 (858)
.+++-++.+.+.+..+++.+|.||+=+|--
T Consensus 84 ~~~~~~~~fa~~l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 84 LSDAAAKAYAKAIVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeee
Confidence 124445666666666667999999999854
No 90
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=85.10 E-value=1.9 Score=49.20 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCC---CCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccccc
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTES---VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ 604 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes---~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~ 604 (858)
.+.+-|+-++++|||+|-|..+.-+ +....| | -+.|.++++.|+++||+|||-.. .+..+
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~y---d----------F~~lD~~l~~a~~~Gi~viL~~~-~~~~P--- 73 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQY---D----------FSWLDRVLDLAAKHGIKVILGTP-TAAPP--- 73 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB----------------HHHHHHHHHHHCTT-EEEEEEC-TTTS----
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhhccCCCCee---e----------cHHHHHHHHHHHhccCeEEEEec-ccccc---
Confidence 4578889999999999999776421 222223 1 34599999999999999999664 22221
Q ss_pred CCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHh----ccCccEEEeCC
Q 003004 605 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN----EIGYDGWRLDF 680 (858)
Q Consensus 605 ~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~----e~GIDGFRlDa 680 (858)
.|-... ..... .....+.. ..+......+..+|.+|+++...++...+ .-.|-||-+|.
T Consensus 74 ----~Wl~~~-~Pe~~---------~~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N 136 (374)
T PF02449_consen 74 ----AWLYDK-YPEIL---------PVDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN 136 (374)
T ss_dssp ----HHHHCC-SGCCC----------B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC
T ss_pred ----cchhhh-ccccc---------ccCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc
Confidence 121000 00000 00000100 01112233466789999988777655544 34578999886
Q ss_pred cc
Q 003004 681 VR 682 (858)
Q Consensus 681 a~ 682 (858)
-.
T Consensus 137 E~ 138 (374)
T PF02449_consen 137 EP 138 (374)
T ss_dssp ST
T ss_pred cc
Confidence 53
No 91
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=85.07 E-value=1.7 Score=55.08 Aligned_cols=131 Identities=15% Similarity=0.219 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 526 l~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
-+.+.+-++.+++.|| ++|||--=+- .+|.. |..|+ +|- +.++|++++|++|+|+|.=+.+ ++..+
T Consensus 200 q~eV~eva~~fre~~IP~DvIwlDidYm----~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~d 268 (978)
T PLN02763 200 AKRVAEIARTFREKKIPCDVVWMDIDYM----DGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKAE 268 (978)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEehhhh----cCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCccC
Confidence 4567777787877664 7788752221 13322 45554 554 5689999999999999764432 22211
Q ss_pred ccCCCCCccccCCcCCCCCCCccCCCCCC--CCCCCCCCCCCCCCC-CCCCCCcHHHHHHHHHHHHHhHhccCccEEEeC
Q 003004 603 YQNQNGVWNIFGGRLNWDDRAVVADDPHF--QGRGNKSSGDNFHAA-PNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (858)
Q Consensus 603 ~~~~~g~w~~~~g~~~w~~~~~~~~~p~f--~~~g~~~~~~~~~~l-PdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlD 679 (858)
..|..+.... ....| ...+..+.+..|.+. .-+|+.||++|+...+.++.++ +.|||||=+|
T Consensus 269 -----~gY~~y~eg~---------~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~D 333 (978)
T PLN02763 269 -----EGYFVYDSGC---------ENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWND 333 (978)
T ss_pred -----CCCHHHHhHh---------hcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEcc
Confidence 1122111000 00000 001111111122111 1247889999999999888888 7999999999
Q ss_pred Ccc
Q 003004 680 FVR 682 (858)
Q Consensus 680 aa~ 682 (858)
+-.
T Consensus 334 mnE 336 (978)
T PLN02763 334 MNE 336 (978)
T ss_pred CCC
Confidence 854
No 92
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=82.36 E-value=8.5 Score=43.63 Aligned_cols=122 Identities=9% Similarity=-0.002 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCC-------CCCCHHHHHHHHHHHHHcCCEEEEEE-eec
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS-------RYGNIDELKDVVNKFHDVGMKILGDV-VLN 597 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp-------~lGt~edfk~LV~aAH~rGIkVILD~-V~N 597 (858)
...|..-+|.++.+++|.++|== .+ ...+++....|=.+-. .+=|.+|+++||+-|.++||.||..+ ++.
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~Hl-tD-d~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PG 94 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWHI-TD-SQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPG 94 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeE-Ec-CCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCch
Confidence 56788888999999999998720 00 0011222221111110 11189999999999999999999877 467
Q ss_pred cccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHh
Q 003004 598 HRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (858)
Q Consensus 598 Htg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~ 669 (858)
|+..-... .+.-+ ...+.+ ... .. .-...-.||..+|++.+++.+++..+++
T Consensus 95 H~~a~~~~-----~p~l~----------~~~~~~--~~~-~~--~~~~~~~L~~~~~~t~~fl~~vl~E~~~ 146 (348)
T cd06562 95 HTGSWGQG-----YPELL----------TGCYAV--WRK-YC--PEPPCGQLNPTNPKTYDFLKTLFKEVSE 146 (348)
T ss_pred hhHHHHHh-----Chhhh----------CCCCcc--ccc-cc--cCCCCccccCCChhHHHHHHHHHHHHHH
Confidence 77542110 00000 000000 000 00 0001124788899999999998887774
No 93
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=82.34 E-value=3.3 Score=46.67 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCC--CCEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 526 YMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 526 l~GI~ekLdYLk~LG--VnaI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
-..+.+-++.+++.+ +++|||=.=+. .+| ..+..|+ +|-. .++|++++|++|+|||+-+.+- ..
T Consensus 23 ~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~---~~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~-- 89 (332)
T cd06601 23 RSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNY---RTFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-IS-- 89 (332)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEcCchh----cCC---CceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-ee--
Confidence 456677777776655 57888765321 122 1344554 5544 4789999999999999877532 11
Q ss_pred ccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcc
Q 003004 603 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (858)
Q Consensus 603 ~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~ 682 (858)
. + . .|.. .... +|+.||++|+...+..+.+. +.|||||=+|+..
T Consensus 90 ----~------g-~-~~~~---------------------~~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~DmnE 133 (332)
T cd06601 90 ----Y------G-G-GLGS---------------------PGLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMTT 133 (332)
T ss_pred ----c------C-c-cCCC---------------------Ccee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCCCC
Confidence 0 0 0 0100 0112 36779999999888888887 7899999999865
No 94
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=81.93 E-value=4 Score=44.65 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHH---HHHHHHHHcCCEEEEEE
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELK---DVVNKFHDVGMKILGDV 594 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk---~LV~aAH~rGIkVILD~ 594 (858)
.+.|.-||.-|||.|-|-=.. +.|+. .=++-.|+..|++ ++.++|.+.||||++|+
T Consensus 66 qD~~~iLK~~GvNyvRlRvwn-----dP~ds----ngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWN-----DPYDS----NGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEec-----CCccC----CCCccCCCcchHHHHHHHHHHHHhcCcEEEeec
Confidence 567888999999998763221 11221 1233445555555 45678889999999999
No 95
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=80.30 E-value=2.5 Score=47.59 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHhCCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+-+.+.+.++.+++.|| ++|||-.=+. .+|. .+..|+ +|- +.++||+++|++|+||++-+.+-- +.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v-~~ 90 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHI-KR 90 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCce-ec
Confidence 35677888888877664 6787753221 1221 245565 454 568899999999999999876442 22
Q ss_pred cccCCCCCccc--cCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHh--ccCccEEE
Q 003004 602 HYQNQNGVWNI--FGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN--EIGYDGWR 677 (858)
Q Consensus 602 ~~~~~~g~w~~--~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~--e~GIDGFR 677 (858)
+.. ...|.. -.|.+.-+. +...|.. ..+.+. ..-+|+.||++++...+.++..+. ..|+|||=
T Consensus 91 ~~~--~~~y~e~~~~g~~vk~~-----~g~~~~~----~~w~g~--~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w 157 (339)
T cd06603 91 DDG--YYVYKEAKDKGYLVKNS-----DGGDFEG----WCWPGS--SSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIW 157 (339)
T ss_pred CCC--CHHHHHHHHCCeEEECC-----CCCEEEE----EECCCC--cCCccCCChhHHHHHHHHHHHHhhcccCCCceEE
Confidence 210 001100 000000000 0000000 001111 123788899999999999988774 36999999
Q ss_pred eCCcc
Q 003004 678 LDFVR 682 (858)
Q Consensus 678 lDaa~ 682 (858)
+|+..
T Consensus 158 ~D~~E 162 (339)
T cd06603 158 NDMNE 162 (339)
T ss_pred eccCC
Confidence 99764
No 96
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=79.32 E-value=2.9 Score=46.28 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
..-..-+++||+||+|+|-+ |.|||..--.+- .+++.+.||.||+|+---+.+-+.
T Consensus 53 ~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nHd~C----M~~~~~aGIYvi~Dl~~p~~sI~r 108 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRV-----------------YSVDPSKNHDEC----MSAFADAGIYVILDLNTPNGSINR 108 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-----------------S---TTS--HHH----HHHHHHTT-EEEEES-BTTBS--T
T ss_pred HHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCHHHH----HHHHHhCCCEEEEecCCCCccccC
Confidence 34456688999999999995 678877744433 344556899999999777555543
No 97
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=78.25 E-value=3.8 Score=46.64 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHHHHhHhccCccEEEeCCc
Q 003004 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (858)
Q Consensus 652 ~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa 681 (858)
.++..|+.+++.+..+++++|.||+-||--
T Consensus 92 ~~~~~R~~fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 92 SNPTYRTQWIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEccc
Confidence 368888888877777777999999999954
No 98
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=78.00 E-value=2.7 Score=56.22 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccc--hhHHHHHHHh------h-----cCCeEEEEEee
Q 003004 640 GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF--WGGYVKDYLE------A-----TEPYFAVGEYW 706 (858)
Q Consensus 640 ~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~--~~~~i~~i~~------~-----~~p~~liGE~w 706 (858)
+.+..+|.-+.-++|+|-+..-..+..|+++=-|||.|||.++++ +.++++++.+ . ..|.+++.|-.
T Consensus 1035 FFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr~~~~~~~~~~~~~~~~~yivvEKI 1114 (1693)
T PRK14507 1035 FFDINSLAALRMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQAAVGAGPGPAGRPPPGLYIVVEKI 1114 (1693)
T ss_pred eecchhheeeeccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHHHhhhhhcccccCCCCceEEEEec
Confidence 334567888888999999999999999998889999999999976 4456666532 1 24578888866
No 99
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=77.71 E-value=3.2 Score=50.48 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCceeEechhhH----------------------------H--H---------HHHHHHHHHHHHHhCcc
Q 003004 803 MQGYAYILTHPGTPSVFYDHIF----------------------------S--H---------YRQEIEALLSVRKRNKI 843 (858)
Q Consensus 803 klA~allltlPGiP~IYYGdE~----------------------------~--~---------l~~~~kkLi~lRk~~pa 843 (858)
..+..+-+|.||||=||.|.|. + + =.....+++++|++++.
T Consensus 709 L~q~LlkltaPGVPD~YQGtE~wd~SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~e 788 (889)
T COG3280 709 LAQTLLKLTAPGVPDIYQGTELWDFSLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHPE 788 (889)
T ss_pred HHHHHHHHcCCCCCccccchhhhhccccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhchH
Confidence 3444566889999999999997 0 1 12356789999999995
Q ss_pred -ccCCCeEEEecCC
Q 003004 844 -HCRSRVSIRMLTK 856 (858)
Q Consensus 844 -L~~G~~~~l~a~~ 856 (858)
++.|++.++.+.+
T Consensus 789 lF~~GdY~Pl~~~G 802 (889)
T COG3280 789 LFAGGDYLPLFAAG 802 (889)
T ss_pred hhcCCCeeeecccC
Confidence 7889999998654
No 100
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=77.64 E-value=3.6 Score=37.08 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=24.1
Q ss_pred eEEEecCccceeEEEEEcCCccccccCCCceeecc
Q 003004 363 RLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 397 (858)
Q Consensus 363 ~~~~l~~~~~g~~fVl~~~~~~W~k~~g~df~v~l 397 (858)
..|++...=..|-||++.++++|=+|+|.||.++.
T Consensus 52 ~tv~vP~~a~~~dfvF~dg~~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 52 ATVDVPEDAYVMDFVFNDGAGNWDNNNGANYHFPV 86 (87)
T ss_dssp EEEE--TTTSEEEEEEE-SSS-EESTTTS-EEEES
T ss_pred EEEEEcCCceEEEEEEcCCCCcEeCCCCccEEEEc
Confidence 34677444447999999987899999999999875
No 101
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=74.13 E-value=8.3 Score=45.23 Aligned_cols=76 Identities=8% Similarity=0.076 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEeC----CCC-----------CCCCCCCCCCccCCCcCCCCC-------------CHHHHH
Q 003004 526 YMELKEKATELSSLGFSVIWLP----PPT-----------ESVSPEGYMPRDLYNLSSRYG-------------NIDELK 577 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~----PIf-----------es~s~hGYd~~Dy~~IDp~lG-------------t~edfk 577 (858)
.+.|.+-+|.++..++|.++|- --| +..+++++...+...+.|.+| |.+|++
T Consensus 21 ~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di~ 100 (445)
T cd06569 21 KETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADYI 100 (445)
T ss_pred HHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHHH
Confidence 6678888888888889988872 111 112233333333333333332 789999
Q ss_pred HHHHHHHHcCCEEEEEE-eeccccc
Q 003004 578 DVVNKFHDVGMKILGDV-VLNHRCA 601 (858)
Q Consensus 578 ~LV~aAH~rGIkVILD~-V~NHtg~ 601 (858)
+||+-|++|||.||-.+ ++.|+..
T Consensus 101 eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 101 EILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHcCCEEEEccCCchhHHH
Confidence 99999999999999776 4677764
No 102
>PLN02950 4-alpha-glucanotransferase
Probab=69.30 E-value=12 Score=47.63 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC------CCCCCCccCCCcCCCCCCHHHHH
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS------PEGYMPRDLYNLSSRYGNIDELK 577 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s------~hGYd~~Dy~~IDp~lGt~edfk 577 (858)
|||..+.+-+|.+++.|.+.|.|+|+..... ...|.+..-+++||.|=+.+++-
T Consensus 280 GDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~ 339 (909)
T PLN02950 280 GEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALS 339 (909)
T ss_pred eCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHH
Confidence 8899999999999999999999999987542 23799999999999998876663
No 103
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=69.16 E-value=19 Score=40.26 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=30.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhHhccCccEEEeCCcccc
Q 003004 648 NIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (858)
Q Consensus 648 dLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~ 684 (858)
.+|..+++.++.|.+-+...+ +.|+|||-+|.+..+
T Consensus 137 ~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 137 DVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred eEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 578889999999998887776 799999999988743
No 104
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=68.56 E-value=4.5 Score=45.27 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCC--CCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEee
Q 003004 530 KEKATELSSLGFSVIWLPPPTES--VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes--~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~ 596 (858)
.+.|..+|.+|+|+|..-=.+.. +... ..|| -+..||.++++.|+++||.|||-.=+
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g---~~df-------~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEG---QFDF-------TGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTT---B----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCC---cccc-------cchhhHHHHHHHHHHcCcEEEecccc
Confidence 67888999999999987433321 1111 2222 23578999999999999999988643
No 105
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=66.86 E-value=34 Score=38.34 Aligned_cols=121 Identities=18% Similarity=0.143 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEe--CC--CCCCC-----CC-CCCC------CccCCCc--CCCCCCHHHHHHHHHHHHHcC
Q 003004 526 YMELKEKATELSSLGFSVIWL--PP--PTESV-----SP-EGYM------PRDLYNL--SSRYGNIDELKDVVNKFHDVG 587 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L--~P--Ifes~-----s~-hGYd------~~Dy~~I--Dp~lGt~edfk~LV~aAH~rG 587 (858)
.+-|.+-||.++.+++|.++| += .++.. .. ..|. +..+... ...+=|.+|+++||+-|.++|
T Consensus 16 ~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rg 95 (326)
T cd06564 16 MDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDRG 95 (326)
T ss_pred HHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHcC
Confidence 677888899999999999998 11 01110 00 0000 0001111 111227899999999999999
Q ss_pred CEEEEEE-eeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 003004 588 MKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCW 666 (858)
Q Consensus 588 IkVILD~-V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~ 666 (858)
|.||-.+ ++.|+..--.. ++.-+ ...+ ........||..+|++.+++.+++..
T Consensus 96 I~vIPEID~PGH~~a~~~~-----~pel~----------~~~~-----------~~~~~~~~l~~~~~~t~~f~~~l~~E 149 (326)
T cd06564 96 VNIIPEIDSPGHSLAFTKA-----MPELG----------LKNP-----------FSKYDKDTLDISNPEAVKFVKALFDE 149 (326)
T ss_pred CeEeccCCCcHHHHHHHHh-----hHHhc----------CCCc-----------ccCCCcccccCCCHHHHHHHHHHHHH
Confidence 9999766 45676542100 00000 0000 00111234788899999999999888
Q ss_pred hHhccC
Q 003004 667 LRNEIG 672 (858)
Q Consensus 667 Wl~e~G 672 (858)
.++-+.
T Consensus 150 ~~~~f~ 155 (326)
T cd06564 150 YLDGFN 155 (326)
T ss_pred HHHhcC
Confidence 775444
No 106
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=66.83 E-value=37 Score=42.30 Aligned_cols=133 Identities=17% Similarity=0.235 Sum_probs=75.9
Q ss_pred CcHHHHHHHHHHHHhCCCC--EEEeCCCCCCCCCCCCC--CccCCCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEEeec-
Q 003004 524 RWYMELKEKATELSSLGFS--VIWLPPPTESVSPEGYM--PRDLYNLS-SRYGNIDELKDVVNKFHDVGMKILGDVVLN- 597 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVn--aI~L~PIfes~s~hGYd--~~Dy~~ID-p~lGt~edfk~LV~aAH~rGIkVILD~V~N- 597 (858)
+.+..+.+..++.+++|+. .+|. +--|. -.|| .+| -.|++ ++++++.+|++|+|+|+=+-++
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~--------DiDyMd~ykDF-Tvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVI--------DIDYMDGYKDF-TVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeee--------ehhhhhcccce-eeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5588999999999999986 5552 11122 3443 344 35666 9999999999999998654422
Q ss_pred cccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCC-CCCCCCCC-CCCCCCCcHHHHHHHHHHHHHhHhccCccE
Q 003004 598 HRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNK-SSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (858)
Q Consensus 598 Htg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~-~~~~~~~~-lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDG 675 (858)
++... ++.|..-.....|-. + ..+.. ..+..+++ ..=+|+.||.+.....+-++..-++.++||
T Consensus 376 s~~~~----y~~y~~g~~~~v~I~-----~-----~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg 441 (805)
T KOG1065|consen 376 STNSS----YGPYDRGVAKDVLIK-----N-----REGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDG 441 (805)
T ss_pred ccCcc----chhhhhhhhhceeee-----c-----ccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccc
Confidence 11111 111110000000000 0 00111 12222222 222567788888887777776667889999
Q ss_pred EEeCCcc
Q 003004 676 WRLDFVR 682 (858)
Q Consensus 676 FRlDaa~ 682 (858)
+=+|+-.
T Consensus 442 ~wiDmnE 448 (805)
T KOG1065|consen 442 FWIDMNE 448 (805)
T ss_pred eEEECCC
Confidence 9999954
No 107
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=65.46 E-value=15 Score=45.50 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCC-----CCCCCCCCccCCCcCCCCCCHHHHHHHH
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTES-----VSPEGYMPRDLYNLSSRYGNIDELKDVV 580 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes-----~s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (858)
|||-.+.+-++.+++.|.+.+.|+|+... ..+..|.+.+-+.+||.|=+.+++-++.
T Consensus 162 GDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 162 GDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred ecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence 78888999999999999999999999853 3578899999999999998887766553
No 108
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=64.97 E-value=17 Score=39.06 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~ 594 (858)
.+-|+++++||+++|.++==+-. + ..++..+||+.++++|++|+-.+
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~-------------i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSME-------------I-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccC-------------C-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 34455999999999999753211 1 27899999999999999998554
No 109
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=64.71 E-value=11 Score=35.65 Aligned_cols=43 Identities=23% Similarity=0.593 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
-+-+.+-++.+.++|+.++|+.|= +.-+++++.|+++||+|+.
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEe
Confidence 356788899999999999999883 4557788999999999974
No 110
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=64.41 E-value=23 Score=39.47 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003004 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (858)
Q Consensus 572 t~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~ 651 (858)
+.+.+++-|+++|++|+|||+-+ | |. .. . ...
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----G--------------G~---~~--------------~------------~~~ 89 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----G--------------GA---NG--------------H------------VDL 89 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----e--------------CC---CC--------------c------------ccc
Confidence 56789999999999999999865 1 10 00 0 012
Q ss_pred CcHHHHHHHHHHHHHhHhccCccEEEeCCcc
Q 003004 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (858)
Q Consensus 652 ~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~ 682 (858)
.++.-|+.+.+.+..+++++|+||+=||--.
T Consensus 90 ~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 90 NHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 3456677788888788889999999999654
No 111
>PRK15447 putative protease; Provisional
Probab=63.63 E-value=21 Score=39.61 Aligned_cols=52 Identities=4% Similarity=0.150 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCC-CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~P-Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
.|.+ +.-...|++.|+++||+.- .|.... + | +.+++++.|+.||++|.+|++
T Consensus 14 ~~~~---~~~~~~~~~~gaDaVY~g~~~~~~R~-------~-------f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 14 KETV---RDFYQRAADSPVDIVYLGETVCSKRR-------E-------L-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCCH---HHHHHHHHcCCCCEEEECCccCCCcc-------C-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 4554 4445568899999999973 222221 1 2 679999999999999999988
No 112
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=63.18 E-value=19 Score=39.90 Aligned_cols=119 Identities=9% Similarity=0.122 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcC-----------CCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----------SRYGNIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~ID-----------p~lGt~edfk~LV~aAH~rGIkVILD~ 594 (858)
...|.+-+|.++.+++|.++|-=- +. ..+++....|=.+- ..+=|.+|+++||+-|.++||.||-.+
T Consensus 15 ~~~lk~~id~ma~~K~N~lhlHl~-D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 15 VESIKRTIDVLARYKINTFHWHLT-DD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeee-cC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEec
Confidence 567888899999999999976211 00 01122211111110 112268999999999999999999777
Q ss_pred -eeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHh
Q 003004 595 -VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (858)
Q Consensus 595 -V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~ 669 (858)
++.|+..--.. +..... +.+.+. .+. ..-..||..+|++.+++.+++..+++
T Consensus 93 D~PGH~~a~~~~----~p~l~~-------------~~~~~~-----~~~-~~~~~l~~~~~~t~~fl~~l~~e~~~ 145 (303)
T cd02742 93 DMPGHSTAFVKS----FPKLLT-------------ECYAGL-----KLR-DVFDPLDPTLPKGYDFLDDLFGEIAE 145 (303)
T ss_pred cchHHHHHHHHh----CHHhcc-------------CccccC-----CCC-CCCCccCCCCccHHHHHHHHHHHHHH
Confidence 46777542100 000000 000000 000 01124788899999999988887774
No 113
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=62.74 E-value=22 Score=39.96 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcC---------C---CCCCHHHHHHHHHHHHHcCCEEEEE
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS---------S---RYGNIDELKDVVNKFHDVGMKILGD 593 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~ID---------p---~lGt~edfk~LV~aAH~rGIkVILD 593 (858)
.+.|.+-||.++..++|.++|--- +. ..+++....|=.+- . .+=|.+|+++||+-|.+|||.||-.
T Consensus 17 ~~~lk~~id~ma~~KlN~lhlHLt-D~-~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 17 VAEVKRYIDLLALYKLNVLHLHLT-DD-QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEee-cC-CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 677888889999999999988321 00 01222222221111 1 1227899999999999999999977
Q ss_pred E-eeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHh
Q 003004 594 V-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (858)
Q Consensus 594 ~-V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~ 669 (858)
+ ++-|+..-.. .|..+... .+ ..+.+. +.. .....||..+|++.+++.+++...++
T Consensus 95 iD~PGH~~a~~~----~~p~l~~~-~~-------~~~~~~-------~~~-~~~~~l~~~~~~t~~fl~~v~~E~~~ 151 (329)
T cd06568 95 IDMPGHTNAALA----AYPELNCD-GK-------AKPLYT-------GIE-VGFSSLDVDKPTTYEFVDDVFRELAA 151 (329)
T ss_pred cCCcHHHHHHHH----hChhhccC-CC-------CCcccc-------ccC-CCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 6 3566653210 00000000 00 000000 000 01235788999999999988877764
No 114
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=62.63 E-value=24 Score=37.27 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCC-------CCCHHHHHHHHHHHHHcCCEEEE
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSR-------YGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~-------lGt~edfk~LV~aAH~rGIkVIL 592 (858)
-+.|.+-.+.|+++|+..+.|.|.+ .+...-|..++.. -=+.++++++.+.+.++|+++++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh------~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFH------QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCC------ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 3556666678888899999999954 3333333322211 12578999999999999999975
No 115
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=61.45 E-value=21 Score=38.30 Aligned_cols=64 Identities=25% Similarity=0.250 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 652 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~ 652 (858)
..++..++++||++|+||++=+- ++... .| .. -..
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~----------------------------~~------------~~----~~~ 79 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP----------------------------EF------------TA----ALN 79 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC----------------------------cc------------hh----hhc
Confidence 35788999999999999998541 11000 00 00 123
Q ss_pred cHHHHHHHHHHHHHhHhccCccEEEeCCc
Q 003004 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (858)
Q Consensus 653 np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa 681 (858)
++..|+.+++.+..+++++|.||+-||.-
T Consensus 80 ~~~~r~~fi~~lv~~~~~~~~DGIdiDwE 108 (253)
T cd06545 80 DPAKRKALVDKIINYVVSYNLDGIDVDLE 108 (253)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceeEEee
Confidence 57788888877777777999999999964
No 116
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=61.43 E-value=27 Score=38.80 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEeC--CCCCCCCCCCCCCccCCCcC--CCCCCHHHHHHHHHHHHHcCCEEEEEE-eecccc
Q 003004 526 YMELKEKATELSSLGFSVIWLP--PPTESVSPEGYMPRDLYNLS--SRYGNIDELKDVVNKFHDVGMKILGDV-VLNHRC 600 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~--PIfes~s~hGYd~~Dy~~ID--p~lGt~edfk~LV~aAH~rGIkVILD~-V~NHtg 600 (858)
..-|.+-+|.++.+|+|.++|= =-|+..+ +-.+. ...=|.+|+++|++-|.++||.||-.+ +|.|+.
T Consensus 16 ~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~--------~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 16 VSYLKKLLRLLALLGANGLLLYYEDTFPYEG--------EPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecceecCC--------CcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 5678899999999999999881 1111111 11111 111278999999999999999999654 256664
No 117
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=60.42 E-value=15 Score=45.74 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=44.2
Q ss_pred CCCCCCCC-----CcHHHHHHHHHHHHHhHhccCccEEEeCCcc----cchhHHHHHHHhhcCC-eEEEEEeeCCC
Q 003004 644 HAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR----GFWGGYVKDYLEATEP-YFAVGEYWDSL 709 (858)
Q Consensus 644 ~~lPdLN~-----~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~----~~~~~~i~~i~~~~~p-~~liGE~w~~~ 709 (858)
++-.+|++ .+|.++++|.+....=. .=.||+|+|.++ |+-.-+++. .+..+| .|+++|.+.+.
T Consensus 496 GDsVKLryG~kpeDsPyLWq~M~kY~e~tA--riFdG~RlDNcHsTPlHVaEylLd~-ARk~nPnlYVvAELFtgS 568 (1521)
T KOG3625|consen 496 GDSVKLRYGNKPEDSPYLWQHMKKYTEITA--RIFDGVRLDNCHSTPLHVAEYLLDA-ARKLNPNLYVVAELFTGS 568 (1521)
T ss_pred cceeeeccCCCcccChHHHHHHHHHHHHHH--HHhcceeeccCCCCchhHHHHHHHH-HHhcCCCeEEEeeeccCC
Confidence 34445555 46889999998876554 357999999998 444445544 344455 99999999864
No 118
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=58.85 E-value=23 Score=44.10 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC-----C-CCCCCccCCCcCCCCCCHHHHH
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS-----P-EGYMPRDLYNLSSRYGNIDELK 577 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s-----~-hGYd~~Dy~~IDp~lGt~edfk 577 (858)
|||-.+.+-+|.+++.|.+.|.|+|+..... + ..|.+.+-+++||.|=+.+.+.
T Consensus 80 GDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 80 GDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 7888899999999999999999999987542 2 4899999999999988776653
No 119
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=57.83 E-value=18 Score=41.92 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCH---HHHHHHHHHHHHcCCEEEEEE
Q 003004 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNI---DELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~---edfk~LV~aAH~rGIkVILD~ 594 (858)
.++-+.++|+.|+|+|-|+=-+++- .+.. ..+|.+=.. .-+.+.|++|.++||+|++|+
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~------~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWAL-QATD------GDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhh-hccC------CCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 4778899999999999974322332 1111 145555322 256777999999999999997
No 120
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=55.39 E-value=26 Score=37.76 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~ 594 (858)
.+.+-|+++++|||++|.++==+ -.. +.++..++|+.|.++|++|+-.+
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGt--------i~l----------~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGT--------IDL----------PEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SS--------S-------------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEecCCc--------eeC----------CHHHHHHHHHHHHHCCCEEeecc
Confidence 34677889999999999986422 122 27899999999999999998776
No 121
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=54.44 E-value=45 Score=37.61 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
..++-....+.=|+..|..-...-++...+|. . ...|.. --..+.||+|++++|++|-++++=+ +|.|...
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~-~-~~~i~~-d~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~ 107 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFP-G-QPGIWD-DEQIPGLKKLADAVHAHGAKIIAQL--WHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSST-T-SEBSSS-HHHHHHHHHHHHHHHHTTSEEEEEE--E--GGGS
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccc-c-cchhch-hhHHHHHHHHHHHHHhcCccceeec--ccccccc
Confidence 34455555566688777664444333221111 1 011110 0125689999999999999999876 7888765
No 122
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=54.22 E-value=16 Score=40.99 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCC----CC--CCC-----CC-CCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 003004 526 YMELKEKATELSSLGFSVIWLPPP----TE--SVS-----PE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PI----fe--s~s-----~h-GYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD 593 (858)
++-|.+-|+.++.+++|.++|=-- |. ..+ .. .|...+ . +. +=|.+|+++||+.|+++||+||-.
T Consensus 17 ~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~--~-~~-~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 17 VDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSD--A-GG-YYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTC--T-ES-EBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCcccccc--c-cc-cCCHHHHHHHHHHHHHcCCceeee
Confidence 678899999999999999988211 10 010 11 122211 0 00 226899999999999999999977
Q ss_pred E-eeccccc
Q 003004 594 V-VLNHRCA 601 (858)
Q Consensus 594 ~-V~NHtg~ 601 (858)
+ +|.|++.
T Consensus 93 id~PGH~~~ 101 (351)
T PF00728_consen 93 IDTPGHAEA 101 (351)
T ss_dssp EEESSS-HH
T ss_pred ccCchHHHH
Confidence 7 4677765
No 123
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=51.56 E-value=59 Score=36.38 Aligned_cols=122 Identities=12% Similarity=0.181 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCc-----CCCCCCHHHHHHHHHHHHHcCCEEEEEE-eeccc
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL-----SSRYGNIDELKDVVNKFHDVGMKILGDV-VLNHR 599 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~I-----Dp~lGt~edfk~LV~aAH~rGIkVILD~-V~NHt 599 (858)
.+.|.+-||.++.+++|.++|-=. +. ..+++....|=.+ ...+=|.+|+++||+-|.++||+||-.+ ++.|+
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~Hlt-Dd-~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHLT-DD-QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEe-cC-CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 677888899999999998877210 00 0111111111111 0112278999999999999999999776 46777
Q ss_pred cccccCCCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHh
Q 003004 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (858)
Q Consensus 600 g~~~~~~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~ 669 (858)
..-.. .|..+. .....+. ....++. .-+-||-.+|++.+++.+++..+++
T Consensus 95 ~a~~~----~ypel~-----------~~~~~~~----~~~~~~~-~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 95 SAIAV----AYPELA-----------SGPGPYV----IERGWGV-FEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred HHHHH----hCHHhc-----------cCCCccc----ccccccc-CCCccCCCChhHHHHHHHHHHHHHH
Confidence 54211 000000 0000000 0001111 1135888899999999988877663
No 124
>PLN03059 beta-galactosidase; Provisional
Probab=51.45 E-value=28 Score=43.72 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~ 594 (858)
.++|.-+|.+|+|+|..==++..... .+.. -.|.+..||.++++.|++.||.|||=.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HEp---~~G~-----~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHEP---SPGN-----YYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccCC---CCCe-----eeccchHHHHHHHHHHHHcCCEEEecC
Confidence 67788899999999986332221111 1111 124568999999999999999999864
No 125
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=51.44 E-value=27 Score=43.39 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeec
Q 003004 574 DELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 574 edfk~LV~aAH~rGIkVILD~V~N 597 (858)
..++++.+.|+++||+||.|+.+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 478889999999999999999875
No 126
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=51.03 E-value=1.4e+02 Score=33.88 Aligned_cols=63 Identities=13% Similarity=0.005 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 529 LKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
..+-++-+|++|...|-|+--.... .-+.=...+|..++.. +..+=+++|+++|+++|||+.+
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~-~krDiv~El~~A~rk~Glk~G~ 156 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSG-PKRDIVGELADACRKYGLKFGL 156 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGG-GTS-HHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCC-CCCCHHHHHHHHHHHcCCeEEE
Confidence 3566778999999999987654321 1122233344444522 2357899999999999999988
No 127
>PRK07094 biotin synthase; Provisional
Probab=50.21 E-value=28 Score=38.71 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
.+.+..|++.|++.+.+.. ++. +..-|-.+.+. .+.++..+.++.+|+.||.|..++++.+-+..
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl--Es~-----~~~~~~~i~~~-~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH--ETA-----DKELYAKLHPG-MSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred HHHHHHHHHcCCCEEEecc--ccC-----CHHHHHHhCCC-CCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 5778899999999998644 222 22223344443 67899999999999999999999999876654
No 128
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=49.56 E-value=33 Score=38.35 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=45.7
Q ss_pred HHHHHHHHhCCCC-EEEeCCCCCCCCCCCCCCccC-CCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecc
Q 003004 530 KEKATELSSLGFS-VIWLPPPTESVSPEGYMPRDL-YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (858)
Q Consensus 530 ~ekLdYLk~LGVn-aI~L~PIfes~s~hGYd~~Dy-~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NH 598 (858)
.++|..|++.|++ .|.|-. ++.+ ..-. ..++-.+ +.+++.+.++.+|++||+|.+++.+..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~-----d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETAN-----DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCC-----HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 7889999999998 688754 2221 1112 1355555 789999999999999999999999863
No 129
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=49.25 E-value=42 Score=37.00 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCC-----CCCCCCC--------ccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESV-----SPEGYMP--------RDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~-----s~hGYd~--------~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
...+..-|+.+++-|||+|.++=+-+.. ...++.+ .|+.+++|.| -+.+.+.|+.|.++||.+
T Consensus 29 ~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~-- 104 (289)
T PF13204_consen 29 REEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA-- 104 (289)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE--
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE--
Confidence 3455667899999999999985443322 1123333 3555566544 578999999999999988
Q ss_pred EEeecc
Q 003004 593 DVVLNH 598 (858)
Q Consensus 593 D~V~NH 598 (858)
++|+=|
T Consensus 105 ~lv~~w 110 (289)
T PF13204_consen 105 ALVPFW 110 (289)
T ss_dssp EEESS-
T ss_pred EEEEEE
Confidence 577766
No 130
>TIGR03356 BGL beta-galactosidase.
Probab=48.76 E-value=40 Score=39.37 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 003004 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V 595 (858)
.+.-..+-++-||+||++++=++=-+...-..| + -. ..-...+-.+++|++|+++||++|+++.
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g----~-~~--~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSIAWPRIFPEG----T-GP--VNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEcccchhhcccCC----C-CC--cCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 456678999999999999998753222111111 0 00 1112346789999999999999999984
No 131
>PRK15452 putative protease; Provisional
Probab=48.28 E-value=43 Score=39.38 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCCEEEeCC-CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccc
Q 003004 530 KEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~P-Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHt 599 (858)
.++|...-+.|+++||+-. -|.... ...+| +.++|++.|+.||++|++|.+ .+|..
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~----~~~~f--------~~edl~eav~~ah~~g~kvyv--t~n~i 69 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRV----RNNEF--------NHENLALGINEAHALGKKFYV--VVNIA 69 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhh----hccCC--------CHHHHHHHHHHHHHcCCEEEE--EecCc
Confidence 4566666688999999943 332221 11222 468999999999999999987 44544
No 132
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.16 E-value=99 Score=35.10 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
.+.||+|++++|++|-+++ +=++|.|...
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCCC
Confidence 5789999999999999998 5568988754
No 133
>PLN02950 4-alpha-glucanotransferase
Probab=47.22 E-value=36 Score=43.53 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=34.3
Q ss_pred CCCceEEcccCCCCCCCCCCCCCChhHHHHHHHHHHhcCCceeEechhhH
Q 003004 775 WPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF 824 (858)
Q Consensus 775 ~p~~~vnfleNHDt~R~~s~~~~~~~~~klA~allltlPGiP~IYYGdE~ 824 (858)
+|...|.-+++||+..+..-|..+..+....+.-++...|.|=-....|+
T Consensus 789 y~y~sV~t~stHD~~tlr~WWe~~~~~~~~~~~~~l~~~g~~p~~~~~~~ 838 (909)
T PLN02950 789 YSYMTVCAPSCHDCSTLRAWWEEDEERRERFYKHVLGSDGPPPSQCVPDV 838 (909)
T ss_pred CCcceeeecCCCCCHHHHHHHhhCHHHHHHHHHHHhCcCCCCCccCCHHH
Confidence 46678888999999877766666565555556667777787644444444
No 134
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=46.27 E-value=70 Score=30.13 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
+.+..++..|++-|+++|.|+.=.....+++.=|. .+.++++|+++- |+.||.
T Consensus 52 ~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-----------~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 52 RKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-----------IDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-----------HHHHHHHHHHHh--CCCEee
Confidence 57789999999999999999886655443432222 455555555443 998874
No 135
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=46.08 E-value=37 Score=38.53 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~~ 602 (858)
.++|..|+++||+.|.|..= ..+..-+..+ -+-.+.++..+.++.+++.|+. |-+|+.+...+..
T Consensus 100 ~e~l~~l~~~Gv~risiGvq-------S~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQ-------SFRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred HHHHHHHHHcCCCEEEEecc-------cCChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 68899999999999987542 1122222333 3456789999999999999996 7899999876654
No 136
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=45.63 E-value=26 Score=40.77 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCCCCCCC-----CcHHHHHHHHHHHHHhHhccCccEEEeCCcccch
Q 003004 644 HAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW 685 (858)
Q Consensus 644 ~~lPdLN~-----~np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~~~ 685 (858)
++--+|+| .||.++++|.+..+...+ -.+|||||.++..+
T Consensus 361 GDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTP 405 (423)
T PF14701_consen 361 GDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTP 405 (423)
T ss_pred CceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCc
Confidence 34445554 589999999999988873 68999999999443
No 137
>PLN02635 disproportionating enzyme
Probab=45.54 E-value=47 Score=39.98 Aligned_cols=67 Identities=19% Similarity=0.055 Sum_probs=49.7
Q ss_pred eeeeeeeccccCCCC-CcHHH-HHHHHHHHHhCCCCEEEeCCCCCCC-----CCCCCCCccCCCcCCCCCCHHHH
Q 003004 509 EILCQGFNWESHKSG-RWYME-LKEKATELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDEL 576 (858)
Q Consensus 509 ei~~~~F~Wd~~~~G-Gdl~G-I~ekLdYLk~LGVnaI~L~PIfes~-----s~hGYd~~Dy~~IDp~lGt~edf 576 (858)
+|.++-|.--++ -| |||-. ..+-+|.+++.|.+.+.|+|++... .+..|.+.+=+..||.|=+.+.+
T Consensus 31 Gvll~l~SLps~-~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~le~L 104 (538)
T PLN02635 31 GILLHPTSLPGP-YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEEL 104 (538)
T ss_pred EEEEccccCCCC-CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCHHhh
Confidence 445554443222 25 78865 5589999999999999999998763 47889999999999888765543
No 138
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=45.02 E-value=52 Score=37.30 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCEEEEEEeec
Q 003004 578 DVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 578 ~LV~aAH~rGIkVILD~V~N 597 (858)
..+++||++|++|+-=+.+.
T Consensus 50 ~~idaAHknGV~Vlgti~~e 69 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFE 69 (339)
T ss_pred HHHHHHHhcCCeEEEEEEec
Confidence 47889999999999866543
No 139
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=44.93 E-value=46 Score=39.61 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGI-kVILD~V~NHtg~~ 602 (858)
.++|..|+++||+.|.|.|=. .+..-+..+. +-.+.+++.+.++.|++.|+ .|-+|+.+.-.+..
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS-------~~d~vLk~ig-R~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt 334 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQT-------MNDETLKAIG-RHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEG 334 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCc-------CCHHHHHHhC-CCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCC
Confidence 788999999999999988721 1112223332 33578999999999999999 78899998876553
No 140
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=44.68 E-value=53 Score=35.84 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NH 598 (858)
.+.+..|+++|++.|.+. ++ .+ +.-|..+.+. .+.++..+.++.+|+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~-----~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TS-----QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CC-----HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 678899999999999997 33 22 1122334433 5788999999999999999999988866
No 141
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=44.68 E-value=20 Score=42.70 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=34.7
Q ss_pred CcH-HHHHHHHHHHHhCCCCEEEeCCCCCCCC--CCCCCCccCCCcCCCCCCHHHHHH
Q 003004 524 RWY-MELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDELKD 578 (858)
Q Consensus 524 Gdl-~GI~ekLdYLk~LGVnaI~L~PIfes~s--~hGYd~~Dy~~IDp~lGt~edfk~ 578 (858)
||| ..+.+-++.+++.|+..+.|.|++.... ...|.+.+-+.+||.|=+.+.+.+
T Consensus 15 GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e 72 (496)
T PF02446_consen 15 GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPE 72 (496)
T ss_dssp --SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHH
T ss_pred ecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhh
Confidence 788 8999999999999999999999997642 338999999999999987765543
No 142
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=43.32 E-value=46 Score=40.42 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEee
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~ 596 (858)
.++|..+|++|+|+|..-=++. .|--.+.- -.|.+.-||.++|++||+.|+.|+|=+=+
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn---~Hep~~g~-----y~FsG~~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN---LHEPSPGK-----YDFSGRYDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc---cccCCCCc-----ccccchhHHHHHHHHHHHCCeEEEecCCC
Confidence 5667788999999998533332 12111111 14678899999999999999999997643
No 143
>PLN02803 beta-amylase
Probab=43.10 E-value=69 Score=38.14 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 526 YMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
-+++.+.|..||.+||+.|-+-= |.|..+...|+- ...++|++.+++.|+||..=+-|.-||.+
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW-------------EGYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 37899999999999999997633 334444555654 45788999999999999999999888765
No 144
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=43.04 E-value=46 Score=37.99 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~~ 602 (858)
.++|+.|+++||+.|.|..= + .+..-...++ +-.+.++..+.++.+++.|+. |.+|++++.-+..
T Consensus 108 ~e~l~~l~~~G~~rvslGvQ--S-----~~~~~L~~l~-R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQ--S-----AAPHVLAVLD-RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred HHHHHHHHHcCCCEEEEecc--c-----CCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 58899999999999998541 1 1111112222 334678899999999999999 9999999877654
No 145
>PRK06256 biotin synthase; Validated
Probab=42.91 E-value=36 Score=38.07 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NH 598 (858)
.+.+..|++.|++.+.+.. ++ + ..-|-.+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~l--Et-s-----~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL--ET-S-----RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCC--cc-C-----HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 5778899999999998753 33 2 2223445543 4789999999999999999999999976
No 146
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.74 E-value=49 Score=35.66 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCEEEeCCCCCCCCCC-CCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 529 LKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~h-GYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
+.+.++.++++|+++|.|.+.. .| ...+.++ +.++++++.+.+.++||+|..
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~----~~~~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDE----SDERLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCC----cccccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 5889999999999999996431 11 0111111 457899999999999999863
No 147
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=42.68 E-value=14 Score=34.22 Aligned_cols=101 Identities=9% Similarity=-0.019 Sum_probs=57.9
Q ss_pred cccccccCcccCCCCcceeEEEe---cCccceeEEEEEcCCccccccCCCceeeccCCCCCCCCcccccccccCCCcccc
Q 003004 345 NKALRTLLQPKEGGKGCSRLFTV---DEEFAGFLFVLKLNENTWLKCMENDFYIPLTSSSCLPAESVQEMLIPGKAEEAT 421 (858)
Q Consensus 345 ~~a~~Tpf~~~~~~~~~~~~~~l---~~~~~g~~fVl~~~~~~W~k~~g~df~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 421 (858)
+..++ ||++ ..+.|.| .+....+.+++..+ + | .+.. ..++|...+.. +..+.|++ ++.+.
T Consensus 7 ~~~~~-p~ga------~~v~irlr~~~~~v~~v~l~~~~~-~-~--~~~~-~~~~M~~~~~~---~~~~~~~~--~i~~~ 69 (116)
T cd02857 7 SEYAY-PYGA------DTLHIRLRTKKGDVAKVYLRYGDP-Y-D--KGEE-EEVPMRKDGSD---ELFDYWEA--TLPPP 69 (116)
T ss_pred CceeE-EcCC------CEEEEEEEecCCCccEEEEEEECC-C-C--CCCc-eEEEEEEeeeC---CceeEEEE--EEecC
Confidence 44566 8888 2466666 44567777766665 2 1 1122 37799776664 33345654 55543
Q ss_pred ccccccchhhhHHH--Hhhhcc-cCcccchhhhccchhhhhhhhhHh
Q 003004 422 QEVSQTAYTAGIIK--EIRNLV-SDFSSDISRKTKSKEAQKSILLEI 465 (858)
Q Consensus 422 ~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~q~tv~~~~ 465 (858)
. +..+|+|.++. +.+.+- .|.+.... ......||+|++++.
T Consensus 70 -~-~~~~Y~F~l~~~~~~~~y~~~G~~~~~~-~~~~~~Fq~t~~~~~ 113 (116)
T cd02857 70 -T-GRLRYYFELVDDGETVWYGEEGFSDEPP-DTDANYFQFPYIHPA 113 (116)
T ss_pred -C-cEEEEEEEEEcCCEEEEEeCCccccccc-cccCCceeeCccCHH
Confidence 3 89999999974 222222 23332211 124567899998775
No 148
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=41.96 E-value=42 Score=39.14 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE-EEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL-GDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVI-LD~V~NHtg~~ 602 (858)
.++|..|+++||+.|.|.-= + .+......++-.. +.++..+.++.+++.||.+| +|+.++.-+..
T Consensus 141 ~e~l~~l~~~G~~rvslGvQ--S-----~~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQ--S-----FHDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred HHHHHHHHHcCCCEEEEecc--c-----CCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 68899999999999987531 1 1111122232222 67899999999999999865 99998877654
No 149
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=41.92 E-value=30 Score=40.63 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=46.4
Q ss_pred cceeeeeeeccccCCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHc
Q 003004 507 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 586 (858)
Q Consensus 507 ~yei~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~r 586 (858)
+|++++.+|- -| -..|-||++|-|++|=+==.|-.. +.....+.-=+.++|+-||..
T Consensus 414 G~~IyIDDFG------TG-----YSnL~YLq~L~VDaLKIDKsFvdt------------lg~~~a~~~I~~hII~MAk~L 470 (524)
T COG4943 414 GHEIYIDDFG------TG-----YSNLHYLQSLPVDALKIDKSFVDT------------LGTDSASHLIAPHIIEMAKSL 470 (524)
T ss_pred CCeEEEccCc------Cc-----chhHHHHhhCCccceeccHHHHHh------------hccCcccchhHHHHHHHHHHc
Confidence 5889998883 13 467999999998887653332111 111222334688999999999
Q ss_pred CCEEEEEEe
Q 003004 587 GMKILGDVV 595 (858)
Q Consensus 587 GIkVILD~V 595 (858)
||++|..+|
T Consensus 471 ~L~iVaEGV 479 (524)
T COG4943 471 GLKIVAEGV 479 (524)
T ss_pred CCcEEeecc
Confidence 999999987
No 150
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=41.23 E-value=32 Score=39.63 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccc
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHt 599 (858)
.++++.+...|..||.+||++|-+-= |.|..+...|+ ....++|.+.+++.|+||..=+-|.-|
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd-------------Ws~Y~~l~~~vr~~GLk~~~vmsfH~c 78 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD-------------WSGYRELFEMVRDAGLKLQVVMSFHQC 78 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB----------------HHHHHHHHHHHHTT-EEEEEEE-S-B
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC-------------cHHHHHHHHHHHHcCCeEEEEEeeecC
Confidence 46678999999999999999997632 22444445554 456889999999999999999999888
Q ss_pred ccc
Q 003004 600 CAH 602 (858)
Q Consensus 600 g~~ 602 (858)
|.+
T Consensus 79 GgN 81 (402)
T PF01373_consen 79 GGN 81 (402)
T ss_dssp SSS
T ss_pred CCC
Confidence 754
No 151
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=41.18 E-value=1.9e+02 Score=33.26 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccc-ccc
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHR-CAH 602 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHt-g~~ 602 (858)
.+.||+|++++|++|-++++=+ +|. |..
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCc
Confidence 4689999999999999999555 786 654
No 152
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.92 E-value=65 Score=36.62 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCC-----------CCCC----CCCCCCCCc----cCCCcCC--CCCCHHHHHHHHHHHH
Q 003004 526 YMELKEKATELSSLGFSVIWLPP-----------PTES----VSPEGYMPR----DLYNLSS--RYGNIDELKDVVNKFH 584 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~P-----------Ifes----~s~hGYd~~----Dy~~IDp--~lGt~edfk~LV~aAH 584 (858)
.+-|.+-+|.++.+++|.++|-- -++. .+..++... ......+ .+=|.+|+++||+-|.
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 56778888899999999999831 1111 111111110 0011111 1116899999999999
Q ss_pred HcCCEEEEEE-eeccccc
Q 003004 585 DVGMKILGDV-VLNHRCA 601 (858)
Q Consensus 585 ~rGIkVILD~-V~NHtg~ 601 (858)
++||+||-.+ ++.|+..
T Consensus 97 ~rgI~VIPEID~PGH~~a 114 (357)
T cd06563 97 ERGITVIPEIDMPGHALA 114 (357)
T ss_pred HcCCEEEEecCCchhHHH
Confidence 9999999776 4566653
No 153
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=40.55 E-value=27 Score=38.65 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHh--CCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 003004 525 WYMELKEKATELSS--LGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (858)
Q Consensus 525 dl~GI~ekLdYLk~--LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V 595 (858)
+++.|.+.+..... -=+..|+|.-..+.....-| +.++++++.+-||++||+|.||+.
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~-------------s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVY-------------SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB----------------HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeC-------------CHHHHHHHHHHHHhCceEEEEehh
Confidence 45555554443332 22366777655443221112 378999999999999999999995
No 154
>PLN02801 beta-amylase
Probab=40.52 E-value=76 Score=37.59 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+-+++.+.|..||.+||++|-+-= |.|..+...|+- ...++|++.+++.|+||..=+-|..||.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW-------------SAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 356899999999999999997643 334445555654 4578899999999999999999988876
Q ss_pred c
Q 003004 602 H 602 (858)
Q Consensus 602 ~ 602 (858)
+
T Consensus 102 N 102 (517)
T PLN02801 102 N 102 (517)
T ss_pred C
Confidence 4
No 155
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=39.76 E-value=5.2e+02 Score=29.69 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
.+.|++++++.|+.|=++++=+ +|.|...
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL--~H~Gr~~ 110 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQL--WHAGRKA 110 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEe--ccCcccc
Confidence 5689999999999999999866 8999653
No 156
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=39.56 E-value=1.2e+02 Score=32.92 Aligned_cols=44 Identities=16% Similarity=-0.040 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHhHhccCccEEEeCCccc----chhHHHHHHHhhc
Q 003004 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG----FWGGYVKDYLEAT 696 (858)
Q Consensus 653 np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~~----~~~~~i~~i~~~~ 696 (858)
+++-|+.+.+.+..+++++|+||+-||--.. -...+++++++..
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~ 140 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDF 140 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHh
Confidence 3445555566666666799999999987542 1234555655543
No 157
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=39.02 E-value=77 Score=33.19 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkV 590 (858)
-+...+..|++||++.|=..|+-- +-..+||+++.++|-++||.+
T Consensus 136 ~vetAiaml~dmG~~SiKffPm~G------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKFFPMGG------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE---TT------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred cHHHHHHHHHHcCCCeeeEeecCC------------------cccHHHHHHHHHHHHHcCcee
Confidence 357788899999999999988631 224799999999999999987
No 158
>PRK05660 HemN family oxidoreductase; Provisional
Probab=38.97 E-value=56 Score=37.42 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEE-EEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI-LGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkV-ILD~V~NHtg~~ 602 (858)
.++|..|+++||+.|.|.. ...+..-+..+. +..+.++..+.++.|++.|++. -+|+.+...+..
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 5899999999999999865 222222233333 3367889999999999999985 499999877654
No 159
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.40 E-value=2.7e+02 Score=31.37 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
.+.|++|++++|++|-++++=+ +|.|...
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~ 109 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQS 109 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcCC
Confidence 5789999999999999998765 7887653
No 160
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=38.07 E-value=4.5e+02 Score=29.75 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
..++.....++=|+..|..-...-++...++ +.. ..+... .-.+.|++|++++|++|-++++=+ +|.|..
T Consensus 38 ~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~-~~~-~~~~~d-~~i~~~r~l~d~vh~~G~~i~~QL--~H~G~~ 107 (337)
T PRK13523 38 FHLIHYGTRAAGQVGLVIVEATAVLPEGRIS-DKD-LGIWDD-EHIEGLHKLVTFIHDHGAKAAIQL--AHAGRK 107 (337)
T ss_pred HHHHHHHHHHcCCCeEEEECCeEECccccCC-CCc-eecCCH-HHHHHHHHHHHHHHhcCCEEEEEc--cCCCCC
Confidence 4455555566678888877655444332211 111 011100 125789999999999999998876 788764
No 161
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=36.54 E-value=47 Score=36.74 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHhHhccCccEEEeCCcc
Q 003004 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (858)
Q Consensus 653 np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~ 682 (858)
++..|+.+++.+..+++++|.||+-||--.
T Consensus 84 ~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 113 (313)
T cd02874 84 NPEARQRLINNILALAKKYGYDGVNIDFEN 113 (313)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 577888888777777779999999999754
No 162
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=36.49 E-value=88 Score=36.07 Aligned_cols=116 Identities=12% Similarity=0.022 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCC-CCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCC
Q 003004 530 KEKATELSSLGFSVIWLPPPTES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNG 608 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes-~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g 608 (858)
.+-++-+|+.|...|-|+-=..- -.-+.=...+|..++... ..+=+++|++||+++|||+-+ + |...
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~---Y-~S~~------- 151 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL---Y-HSLF------- 151 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE---E-cCHH-------
Confidence 55677899999999887764321 111222233566666544 568899999999999999987 1 2211
Q ss_pred CccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHH---HHHHHHhHhccCccEEEeCCcc
Q 003004 609 VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI---KEWLCWLRNEIGYDGWRLDFVR 682 (858)
Q Consensus 609 ~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i---~~~l~~Wl~e~GIDGFRlDaa~ 682 (858)
+|+.. .|... ... .......+...+|+ ..-++.++..||-|.+=+|.+-
T Consensus 152 ---------DW~~p-------~y~~~------~~~---~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 152 ---------DWFNP-------LYAGP------TSS---DEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred ---------HhCCC-------ccccc------ccc---ccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 22210 11000 000 00011234456666 6677788889999999999863
No 163
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=36.14 E-value=2.5e+02 Score=32.08 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
.+.|++|++++|++|-++++=+ +|.|...
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL--~H~G~~~ 110 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIEL--WHGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEec--ccCCCCC
Confidence 5789999999999999999876 5888753
No 164
>PTZ00445 p36-lilke protein; Provisional
Probab=36.13 E-value=81 Score=33.42 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCCEEEe---CCCCCCCCCCCCCCccCCCcCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 003004 527 MELKEKATELSSLGFSVIWL---PPPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L---~PIfes~s~hGYd~~Dy~~IDp~lGt--~edfk~LV~aAH~rGIkVIL 592 (858)
+.+..-.+.|++.||.+|-+ +=+.... ..||+-.+ +-+..+++ ..+|++|+.++.+.||+|++
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~~H-sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTMITKH-SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhhhhhh-cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 34444556799999999975 1111100 13444433 33344443 35799999999999999974
No 165
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.06 E-value=1.2e+02 Score=33.67 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
.+.||++++++|+.|-++++=+ +|.|...
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~ 104 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQA 104 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcCC
Confidence 5789999999999999988654 8888754
No 166
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=36.02 E-value=69 Score=37.64 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~~ 602 (858)
.++|..|+++||+.|.|.. ...+..-...++- -.+.++..+.++.+++.|+. |-+|+.+...+..
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-------QS~~~~vl~~l~R-~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt 217 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-------QDFDPQVQKAINR-IQPEEMVARAVELLRAAGFESINFDLIYGLPHQT 217 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCC
Confidence 6899999999999999865 1112222223333 36788999999999999997 8899998876653
No 167
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=35.95 E-value=6.1e+02 Score=28.65 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
..++.....++=|+..|..-.++-++...+| +. .+.+-+ .+.|++|++++|++|-++++ =++|.|...
T Consensus 34 ~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~-----~~~l~~d~~i~~~~~l~~~vh~~g~~~~~--Ql~H~G~~~ 104 (343)
T cd04734 34 RYIAYHEERARGGAGLIITEGSSVHPSDSPA-FG-----NLNASDDEIIPGFRRLAEAVHAHGAVIMI--QLTHLGRRG 104 (343)
T ss_pred HHHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CC-----ccccCCHHHHHHHHHHHHHHHhcCCeEEE--eccCCCcCc
Confidence 3345555556667888876555444332222 11 122222 46899999999999999998 558887653
No 168
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=34.70 E-value=5.7e+02 Score=27.90 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhCCCCEEEeC-CCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccccCC
Q 003004 528 ELKEKATELSSLGFSVIWLP-PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ 606 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~-PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~ 606 (858)
...+-++...+.|++.|.+. |+.+ .+.+++.|+.|+++|++|..-+.+-..+
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~~---------------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~------ 144 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALND---------------------VRNLEVAIKAVKKAGKHVEGAICYTGSP------ 144 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCh---------------------HHHHHHHHHHHHHCCCeEEEEEEecCCC------
Confidence 35677788899999998872 2211 5789999999999999988643211000
Q ss_pred CCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEe-CCcccch
Q 003004 607 NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFW 685 (858)
Q Consensus 607 ~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRl-Daa~~~~ 685 (858)
. + + .+++.+.++... +.|+|.+++ |.+..+.
T Consensus 145 ---------~----------------------------------~-~---~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~ 176 (275)
T cd07937 145 ---------V----------------------------------H-T---LEYYVKLAKELE-DMGADSICIKDMAGLLT 176 (275)
T ss_pred ---------C----------------------------------C-C---HHHHHHHHHHHH-HcCCCEEEEcCCCCCCC
Confidence 0 0 0 234556666665 799999998 8887666
Q ss_pred hHHHHHHHhh
Q 003004 686 GGYVKDYLEA 695 (858)
Q Consensus 686 ~~~i~~i~~~ 695 (858)
+.-+.++++.
T Consensus 177 P~~v~~lv~~ 186 (275)
T cd07937 177 PYAAYELVKA 186 (275)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 169
>PLN02905 beta-amylase
Probab=34.65 E-value=1.1e+02 Score=37.27 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+.+++.+.|..||.+||+.|-+-= |.|..+...|+- ...++|++.+.+.|+||..=+-|.-||.
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW-------------sgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW-------------NGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 467899999999999999997643 234444555554 4578899999999999999999988876
Q ss_pred c
Q 003004 602 H 602 (858)
Q Consensus 602 ~ 602 (858)
+
T Consensus 351 N 351 (702)
T PLN02905 351 N 351 (702)
T ss_pred C
Confidence 5
No 170
>PLN00197 beta-amylase; Provisional
Probab=34.64 E-value=1.1e+02 Score=36.74 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+-+++...|..||.+||+.|-+-= |.|..+...|+- ...++|++.+.+.|+||..=+-|.-||.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdW-------------sgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNW-------------GGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 356889999999999999997643 334445555654 4578899999999999999999988876
Q ss_pred c
Q 003004 602 H 602 (858)
Q Consensus 602 ~ 602 (858)
+
T Consensus 192 N 192 (573)
T PLN00197 192 N 192 (573)
T ss_pred C
Confidence 4
No 171
>PRK01060 endonuclease IV; Provisional
Probab=34.57 E-value=77 Score=34.19 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkV 590 (858)
++.+.|+.++++|+++|.|.+-- .+.+. +..-+.+++++|.+.+.++||+|
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~----p~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGN----PQQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCC----CCCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 36889999999999999986421 11111 11137888999999999999995
No 172
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=34.46 E-value=68 Score=37.68 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~~ 602 (858)
.+.|..|+++|++.|.|..= ..+..-...++- -.+.++..+.++.+++.|++ |-+|+.++..+..
T Consensus 151 ~e~l~~lk~~G~~risiGvq-------S~~~~~l~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQ-------DFNKEVQQAVNR-IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQT 216 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCC-------CCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCC
Confidence 68899999999999998641 111111222332 35688999999999999997 7799998877654
No 173
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=34.45 E-value=72 Score=36.27 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~~ 602 (858)
.++|+.|+++|++.|.+.- . + .+..-...+. +-.+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 103 ~e~l~~lk~~G~nrisiGv-Q-S-----~~d~vL~~l~-R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt 168 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV-Q-S-----MNNNILKQLN-RTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILK 168 (353)
T ss_pred HHHHHHHHHcCCCEEEEec-c-c-----CCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCC
Confidence 6899999999999998743 1 1 1111112222 235788999999999999998 8999999876653
No 174
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=34.45 E-value=4.7e+02 Score=29.87 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
.+.|+++++++|++|-++++ =++|.|...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~--QL~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAV--QLWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEE--eccCCCCCC
Confidence 47899999999999999998 458998764
No 175
>PRK13561 putative diguanylate cyclase; Provisional
Probab=34.38 E-value=49 Score=40.47 Aligned_cols=74 Identities=8% Similarity=0.066 Sum_probs=51.6
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCC------CCCCccCCCcCCCC-----CCHHHHHHHHHHHHHcCCEEEE
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPE------GYMPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~h------GYd~~Dy~~IDp~l-----Gt~edfk~LV~aAH~rGIkVIL 592 (858)
.+...+.+.+..|+++||..-. -=+-.+.++- ..-+.||.+||..| .+..-++.+|+.||..||+||.
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l-ddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viA 609 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL-DDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIA 609 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 4567889999999999996543 1111111111 22467888888544 3456699999999999999999
Q ss_pred EEeecc
Q 003004 593 DVVLNH 598 (858)
Q Consensus 593 D~V~NH 598 (858)
.+|=+.
T Consensus 610 egVE~~ 615 (651)
T PRK13561 610 EGVETE 615 (651)
T ss_pred ecCCCH
Confidence 998553
No 176
>PRK05939 hypothetical protein; Provisional
Probab=34.30 E-value=61 Score=37.40 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHhCCCCEEEeCCCC-C---CCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEee
Q 003004 535 ELSSLGFSVIWLPPPT-E---SVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (858)
Q Consensus 535 YLk~LGVnaI~L~PIf-e---s~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~ 596 (858)
.++.+|+..+++.+.- + ..-..+-...=.-.+....|...+++++++.||++|+.||+|.++
T Consensus 105 ~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 105 TLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 4567788887775531 0 000111111111122345788899999999999999999999875
No 177
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=34.27 E-value=1.1e+02 Score=34.97 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCCEEEeCCC-CCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 003004 530 KEKATELSSLGFSVIWLPPP-TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PI-fes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~ 594 (858)
.++|..+-+-|+++||+.=- |-. .++. .+| +.++|++.|+.||++|.|+++=+
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~---R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGL---RRRA-LNF--------SVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCccccc---cccc-ccC--------CHHHHHHHHHHHHHcCCeEEEEe
Confidence 56677777788999999743 222 2222 222 46789999999999999997643
No 178
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.30 E-value=1.2e+02 Score=28.40 Aligned_cols=60 Identities=27% Similarity=0.336 Sum_probs=39.3
Q ss_pred HHHHHhCCCCEEEeCCCCCCCC-CCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 533 ATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 533 LdYLk~LGVnaI~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
...+..+|..++.+.+...... .......|..-+=..=|...+..++++.||++|++||.
T Consensus 19 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 19 AATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 3355778999998866421111 11223333333335568889999999999999999875
No 179
>PLN02705 beta-amylase
Probab=33.16 E-value=1.1e+02 Score=37.12 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+-++|.+.|..||.+||+.|-+-= |.|..+...|+- ...++|++.+.+.|+||..=+-|.-||.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdW-------------sgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVW-------------SGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 357899999999999999997643 234444455553 4578899999999999999999988876
Q ss_pred c
Q 003004 602 H 602 (858)
Q Consensus 602 ~ 602 (858)
+
T Consensus 333 N 333 (681)
T PLN02705 333 N 333 (681)
T ss_pred C
Confidence 4
No 180
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.49 E-value=1e+02 Score=33.04 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003004 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (858)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVI 591 (858)
+.+.|+.++++|+++|.|..- ..|.|. +.+ +..++++|.+++.++||+|.
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~----~~~~~~--------~~~-~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGG----RPHAFA--------PDL-KAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccC----Cccccc--------ccc-CchHHHHHHHHHHHcCCeEE
Confidence 689999999999999998421 011121 111 34678999999999999984
No 181
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=32.41 E-value=1.1e+02 Score=32.98 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCC---CCCCCCccCCCcCCCCC--------CHHHHHHHHHHHHHcCCEEEEEE
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYG--------NIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s---~hGYd~~Dy~~IDp~lG--------t~edfk~LV~aAH~rGIkVILD~ 594 (858)
...+...+..|+++||.. .|-=+=..-+ +-.--+.|+-+||..|- ...-++.+|+-||+.||+||..+
T Consensus 135 ~~~~~~~l~~L~~~G~~i-alDDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEG 213 (256)
T COG2200 135 LDTALALLRQLRELGVRI-ALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEG 213 (256)
T ss_pred HHHHHHHHHHHHHCCCeE-EEECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEee
Confidence 345666777777777632 3211110000 11123456666775542 23469999999999999999999
Q ss_pred eec
Q 003004 595 VLN 597 (858)
Q Consensus 595 V~N 597 (858)
|=+
T Consensus 214 VEt 216 (256)
T COG2200 214 VET 216 (256)
T ss_pred cCC
Confidence 844
No 182
>PRK05967 cystathionine beta-lyase; Provisional
Probab=32.01 E-value=59 Score=37.61 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEeec
Q 003004 570 YGNIDELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 570 lGt~edfk~LV~aAH~rGIkVILD~V~N 597 (858)
.++..+++++++.||++|+-||+|-++.
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 6789999999999999999999999985
No 183
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=31.89 E-value=91 Score=36.64 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGI-kVILD~V~NHtg~~ 602 (858)
.++|..|+++|++.|.|.. ++ .+..-...+. +..+.++..+.++.+++.|| .|-+|+.++..+..
T Consensus 151 ~e~l~~l~~aG~~risiGv--qS-----~~~~~L~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV--QD-----FDPEVQKAVN-RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred HHHHHHHHHcCCCEEEECC--CC-----CCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 6899999999999998754 11 1111122222 23578899999999999999 89999998877654
No 184
>PLN02161 beta-amylase
Probab=31.77 E-value=1.4e+02 Score=35.63 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
+.+.+...|..||.+||+.|-+-= |.|..+...|+- ...++|++.+++.|+||..=+-|.-||.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW-------------SLYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 457899999999999999997643 334445555654 4578899999999999999998887665
Q ss_pred c
Q 003004 602 H 602 (858)
Q Consensus 602 ~ 602 (858)
+
T Consensus 182 N 182 (531)
T PLN02161 182 L 182 (531)
T ss_pred C
Confidence 3
No 185
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=31.54 E-value=1.8e+02 Score=34.41 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE-eeccccc
Q 003004 572 NIDELKDVVNKFHDVGMKILGDV-VLNHRCA 601 (858)
Q Consensus 572 t~edfk~LV~aAH~rGIkVILD~-V~NHtg~ 601 (858)
|.+|..++|+-|..||||||..+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68999999999999999999877 4677764
No 186
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=31.48 E-value=73 Score=31.26 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
.+.++.|+++|+..|+++-= ..+...+..+....++.++..+.++.++++|+.|...+++.....
T Consensus 88 ~~~~~~l~~~g~~~i~i~le-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~ 152 (204)
T cd01335 88 EELLKELKELGLDGVGVSLD-------SGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDE 152 (204)
T ss_pred HHHHHHHHhCCCceEEEEcc-------cCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCC
Confidence 57778889999999988642 112222333334556789999999999999999999999875543
No 187
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=31.45 E-value=95 Score=36.62 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
.+.|+.+++.|++.|.+.. |+.+. .-+..++-.. +.++..+.++.+|+.||.|..++++..-+.
T Consensus 287 ~e~l~~l~~aG~~~v~iGi--ES~s~-----~~L~~~~K~~-~~~~~~~~i~~~~~~Gi~v~~~~IiGlPge 350 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY--ESGDQ-----QILKNIKKGL-TVEIARRFTRDCHKLGIKVHGTFILGLPGE 350 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC--CCCCH-----HHHHHhcCCC-CHHHHHHHHHHHHHCCCeEEEEEEEeCCCC
Confidence 5778999999999988643 23221 1112222222 578899999999999999999999876544
No 188
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=31.41 E-value=1.4e+02 Score=30.12 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~ 594 (858)
-||.-..+..+-|+++||..-- .-.|.|| |++.+.+++++|+++|++||+=+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~-----~VvSAHR--------------TPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV-----RVVSAHR--------------TPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE-----EEEeccC--------------CHHHHHHHHHHHHHCCCeEEEec
Confidence 4688889999999999997532 1123455 89999999999999999999865
No 189
>PRK09936 hypothetical protein; Provisional
Probab=31.35 E-value=1.1e+02 Score=34.02 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHH-HHHHHHHHHHHcCCEEEEEEeec
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNID-ELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~e-dfk~LV~aAH~rGIkVILD~V~N 597 (858)
.+.+..++.+|+++|.+- ..+| -|+.||+.+ -|.++.++|++.||+|++=+-++
T Consensus 41 q~~~~~~~~~G~~tLivQ-------Wt~y-------G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 41 QGLWSQLRLQGFDTLVVQ-------WTRY-------GDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHHcCCcEEEEE-------eeec-------cCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 667888999999999863 1222 233677654 68999999999999999877543
No 190
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=31.07 E-value=1.8e+02 Score=29.59 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHhHhccCccEEEeCCcc
Q 003004 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (858)
Q Consensus 653 np~Vr~~i~~~l~~Wl~e~GIDGFRlDaa~ 682 (858)
++..|+.+.+.+..+++++|.||+=+|.-.
T Consensus 85 ~~~~~~~f~~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 85 DPASRAAFANSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceEEeeeC
Confidence 566777777777777779999999999654
No 191
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=30.99 E-value=1e+02 Score=34.81 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeeccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~ 601 (858)
.++|..|+++|||.|-|.. . ..+..-...+ -+-.+.++..+.++.+++.|+. |-+|+.++..+.
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-Q------S~~~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-Q------SFNEDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-c------cCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 6899999999999998643 1 1112222223 2344688999999999999997 669999987664
No 192
>PRK10060 RNase II stability modulator; Provisional
Probab=30.69 E-value=53 Score=40.49 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCC---CCCCCCCccCCCcCCCC--------CCHHHHHHHHHHHHHcCCEEEE
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~---s~hGYd~~Dy~~IDp~l--------Gt~edfk~LV~aAH~rGIkVIL 592 (858)
.+...+.+.+..|+++||... |-=+-... ++-..-+.|+.+||..| ....-++.++..||+.||+||.
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ia-lDdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA 616 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVH-LDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA 616 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEE-EECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE
Confidence 346788899999999999643 32211111 11123367888888644 2345689999999999999999
Q ss_pred EEeecc
Q 003004 593 DVVLNH 598 (858)
Q Consensus 593 D~V~NH 598 (858)
++|=+.
T Consensus 617 eGVEt~ 622 (663)
T PRK10060 617 EGVETA 622 (663)
T ss_pred ecCCCH
Confidence 998553
No 193
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=30.64 E-value=86 Score=36.83 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCCCCCCC----------------------CCCccCCCcCCCCCCHHHHHHHHHHHH
Q 003004 527 MELKEKATELSSLGFSVIWLPPPTESVSPEG----------------------YMPRDLYNLSSRYGNIDELKDVVNKFH 584 (858)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hG----------------------Yd~~Dy~~IDp~lGt~edfk~LV~aAH 584 (858)
.||++-|.-+..|||.+.-+.--.-+....+ +.+ +.-.+ -.+++.+.+..+++.++
T Consensus 17 aGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~~q~~a~~~d~~~-~~ik~-G~l~~~e~~~~i~~~~k 94 (448)
T PRK08573 17 AGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVAAQIEAVWEDMGI-DAAKT-GMLSNREIIEAVAKTVS 94 (448)
T ss_pred HHHHHHHHHHHHcCCeecccceEEEeecCCCceEEEECCHHHHHHHHHHHHhcCCC-CEEEE-CCcCCHHHHHHHHHHHH
Confidence 6999999999999998766543322221111 111 11111 23677899999999999
Q ss_pred HcCCEEEEEEeeccc
Q 003004 585 DVGMKILGDVVLNHR 599 (858)
Q Consensus 585 ~rGIkVILD~V~NHt 599 (858)
++|++|++|-|+-..
T Consensus 95 ~~g~~vv~DPv~~~~ 109 (448)
T PRK08573 95 KYGFPLVVDPVMIAK 109 (448)
T ss_pred HcCCCEEEcCccccC
Confidence 999999999987654
No 194
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=30.02 E-value=1.1e+02 Score=33.23 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVI 591 (858)
.+.+.|+.++++|+++|.|.+-. . + ..+++.--+.++.++|.+.+.++||+|.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~-~---~-------~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDE-T---D-------DRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCC-c---c-------chhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 35899999999999999995321 0 0 0122222257889999999999999985
No 195
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=29.66 E-value=5.6e+02 Score=28.72 Aligned_cols=69 Identities=22% Similarity=0.168 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
++.....++=|+..|..-..+-++....| +... .+.. =.-.+.|++|++++|+.|-++++=+ +|.|...
T Consensus 36 ~~~y~~rA~gg~glii~~~~~v~~~~~~~-~~~~-~~~~-d~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~ 104 (336)
T cd02932 36 LVHYGSRALGGAGLVIVEATAVSPEGRIT-PGDL-GLWN-DEQIEALKRIVDFIHSQGAKIGIQL--AHAGRKA 104 (336)
T ss_pred HHHHHHHHcCCCcEEEEcceEECCCcCCC-CCce-eecC-HHHHHHHHHHHHHHHhcCCcEEEEc--cCCCcCC
Confidence 33344445567888876554443332111 1110 0110 0125789999999999999998765 7887653
No 196
>PLN02411 12-oxophytodienoate reductase
Probab=29.07 E-value=5.2e+02 Score=29.84 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
.+.|++|++++|++|-++++=+ +|.|...
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL--~H~Gr~~ 114 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQL--WHVGRAS 114 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCC
Confidence 4689999999999999998876 6888754
No 197
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=29.05 E-value=94 Score=35.44 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~~ 602 (858)
.++|..|+++|++.|.+..= ..+..-+..+. +-.+.++..+.++.+++.|+. |-+|+.+..-+..
T Consensus 100 ~e~l~~l~~~G~~rvsiGvq-------S~~~~~l~~l~-r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt 165 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQ-------TFNDELLKKIG-RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT 165 (377)
T ss_pred HHHHHHHHHcCCCEEEEecc-------cCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC
Confidence 68899999999999987651 11222222232 345688999999999999998 6799999877654
No 198
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=28.92 E-value=8.2e+02 Score=27.27 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHH-HHHHHHHHH-HcCCEEEEEEeeccccccccC
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE-LKDVVNKFH-DVGMKILGDVVLNHRCAHYQN 605 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~ed-fk~LV~aAH-~rGIkVILD~V~NHtg~~~~~ 605 (858)
.+-..++.|++||+|+|||-+.-...++.-.+.. |=.+.++=-.+| |-+.+=+++ +.|++|..=+.. .+-+.+.
T Consensus 18 nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp~ 93 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLPK 93 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCCC
Confidence 4566678899999999999987765544333322 223334444455 444442444 889999876654 2211100
Q ss_pred CCCCccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEe
Q 003004 606 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (858)
Q Consensus 606 ~~g~w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRl 678 (858)
.. .+..... .. ........|.--+|++|+.|.++-+-+..--.+||+=|
T Consensus 94 -~~---------~~~~~~~--~~------------~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 94 -VK---------RADEVRT--DR------------PDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred -cc---------hhhhccc--cC------------CCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 00 0000000 00 00112234666679999999999998885459999877
No 199
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=28.88 E-value=1.2e+02 Score=31.32 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCC---CCCCCCccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEEE
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s---~hGYd~~Dy~~IDp~lGt--------~edfk~LV~aAH~rGIkVILD~ 594 (858)
...+.+.+..|+++||. |+|-=+-...+ .-..-+.||-++|..+-. ..-++.+++.||..|++||.+.
T Consensus 132 ~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 132 DESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred hHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 44556888999999986 45543221111 112235778888876532 2469999999999999999999
Q ss_pred eeccc
Q 003004 595 VLNHR 599 (858)
Q Consensus 595 V~NHt 599 (858)
|=+..
T Consensus 211 Ve~~~ 215 (241)
T smart00052 211 VETPE 215 (241)
T ss_pred CCCHH
Confidence 86654
No 200
>PRK11059 regulatory protein CsrD; Provisional
Probab=28.73 E-value=84 Score=38.49 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCC---CCCCCCCccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEE
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~---s~hGYd~~Dy~~IDp~lGt--------~edfk~LV~aAH~rGIkVIL 592 (858)
.++..+...+..|+++||... |-=+-.+. ++-..-+.||-+||+.|-. ..-++.+++.||..||+||.
T Consensus 530 ~~~~~~~~~l~~L~~~G~~ia-iddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viA 608 (640)
T PRK11059 530 QHISRLRPVLRMLRGLGCRLA-VDQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFA 608 (640)
T ss_pred cCHHHHHHHHHHHHHCCCEEE-EECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEE
Confidence 456788888999999998644 32221111 1223346788888865532 23489999999999999999
Q ss_pred EEeeccc
Q 003004 593 DVVLNHR 599 (858)
Q Consensus 593 D~V~NHt 599 (858)
.+|=+.-
T Consensus 609 egVEt~~ 615 (640)
T PRK11059 609 TGVESRE 615 (640)
T ss_pred EEeCCHH
Confidence 9996544
No 201
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=28.19 E-value=97 Score=37.24 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
.++|+.|+++|++.|+|-.= +. +..-...++ +--+.++..+.++.+++.|++|.+|+.++--+..
T Consensus 206 ~e~L~~L~~~G~~rVslGVQ--S~-----~d~VL~~in-Rght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt 270 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQ--TI-----YNDILERTK-RGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSS 270 (522)
T ss_pred HHHHHHHHHcCCCEEEEECc--cC-----CHHHHHHhC-CCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCC
Confidence 78999999999999998651 11 000011222 2235788899999999999999999999876643
No 202
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=27.59 E-value=89 Score=31.20 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeec
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~N 597 (858)
....--|+.||+.+..+. .|+..++...-..+.+.++++.+++.|++|++|...-
T Consensus 40 ~n~a~~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 40 ANVAVALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHHHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 334456788999888777 4444444432224788999999999999999999743
No 203
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=27.54 E-value=1.2e+02 Score=32.32 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 589 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk 589 (858)
-+...+..|++||.+.|=..|+-- +-..+||+++.++|-++|+.
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~G------------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGG------------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCC------------------cccHHHHHHHHHHHHHcCCc
Confidence 467889999999999999988731 12357777777777777765
No 204
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.20 E-value=4.6e+02 Score=30.01 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
.+.|++|++++|++|=++++=+ +|.|...
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 4789999999999999998876 8887653
No 205
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=27.15 E-value=8.8e+02 Score=27.39 Aligned_cols=71 Identities=17% Similarity=0.028 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccc
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~ 603 (858)
..++.....++=|+..|..-..+-.+...+| +.. ..+... .-.+.|++|++++|+.|-++++=+ +|.|...
T Consensus 34 ~~~~~y~~rA~gG~glii~~~~~v~~~~~~~-~~~-~~~~~~-~~i~~~~~l~~~vh~~g~~~~~QL--~h~G~~~ 104 (353)
T cd02930 34 RLAAFYAERARGGVGLIVTGGFAPNEAGKLG-PGG-PVLNSP-RQAAGHRLITDAVHAEGGKIALQI--LHAGRYA 104 (353)
T ss_pred HHHHHHHHHhcCCceEEEEeeEEeCCcccCC-CCC-cccCCH-HHHHHHHHHHHHHHHcCCEEEeec--cCCCCCC
Confidence 3444444555567877776554433332222 111 111110 235789999999999999998876 6887643
No 206
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=27.10 E-value=1.3e+02 Score=34.50 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=40.7
Q ss_pred CCcHHHHHHHHHH-HHhCCCCEEEeCCCCCCC----CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeec
Q 003004 523 GRWYMELKEKATE-LSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 523 GGdl~GI~ekLdY-Lk~LGVnaI~L~PIfes~----s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~N 597 (858)
||++ ..+.+ |+.+||++.++-|.-... -..+=-..-.-.|-..-+..-|+.++.+-||++|+-+|+|-.+-
T Consensus 112 GGT~----~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~a 187 (426)
T COG2873 112 GGTY----NLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFA 187 (426)
T ss_pred CchH----HHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCC
Confidence 6764 33333 599999999997754100 00000000000111111233469999999999999999996654
No 207
>PLN02389 biotin synthase
Probab=26.52 E-value=1.7e+02 Score=33.76 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~ 601 (858)
.+.+..||+.|++.+.+ .++.. +.-|-.+-+. .+.++..+.++.||+.||+|..=+++.| +.
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeTs------~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gE 239 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDTS------REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL-GE 239 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecCC------hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC-CC
Confidence 68899999999999865 23321 2223344332 2789999999999999999999999998 54
No 208
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=26.42 E-value=57 Score=33.27 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHhCccccCCC
Q 003004 822 HIFSHYRQEIEALLSVRKRNKIHCRSR 848 (858)
Q Consensus 822 dE~~~l~~~~kkLi~lRk~~paL~~G~ 848 (858)
.++....++|+.|++||+.+|.++-+.
T Consensus 38 ~~I~~a~~~f~elL~iR~SspLFrL~t 64 (168)
T PF11852_consen 38 ADIAAASAYFQELLRIRKSSPLFRLGT 64 (168)
T ss_dssp HHHHHHHHHHHHHHHHHCT-GGGG--S
T ss_pred HHHHHHHHHHHHHHHHhccCccccCCC
Confidence 455778999999999999999987654
No 209
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=26.39 E-value=51 Score=38.23 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=42.1
Q ss_pred HHHHHhCCCCEEEeCCCCCCCCC----------CCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 003004 533 ATELSSLGFSVIWLPPPTESVSP----------EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (858)
Q Consensus 533 LdYLk~LGVnaI~L~PIfes~s~----------hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V 595 (858)
...-+..|+...|+..- +.... .+=...-+..+-...|+..+++++++.||++|+.|++|.+
T Consensus 129 ~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 129 QELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred HHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 33445569988887654 22210 1111222334456789999999999999999999999997
No 210
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.29 E-value=1.3e+02 Score=32.31 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccc
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHt 599 (858)
|+..-++.+++.|++.|-++-. + .+++..+++.++++||+.++=+.++..
T Consensus 92 G~~~fi~~~~~aG~~giiipDl-------------------~---~ee~~~~~~~~~~~g~~~i~~i~P~T~ 141 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDL-------------------P---PEEAEEFREAAKEYGLDLIFLVAPTTP 141 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCC-------------------C---HHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 5677888899999999887521 1 368999999999999999987766543
No 211
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=25.81 E-value=7.4e+02 Score=26.91 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V 595 (858)
++.|+...+.|++.|.+.= ..-..+..+++|+.|+++|++|.+-+.
T Consensus 85 ~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 5567777889999987731 001578999999999999999876654
No 212
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=25.47 E-value=1.3e+02 Score=34.91 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~~ 602 (858)
.++|..|+++|||.|.|-.= + .+..-...++ +--+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 115 ~e~l~~l~~~GvnrislGvQ--S-----~~d~~L~~l~-R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQ--A-----FQDELLALCG-RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcc--c-----CCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 68899999999999998541 1 1111122222 233678899999999999999 7799999877654
No 213
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=24.74 E-value=2.1e+02 Score=28.67 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=37.9
Q ss_pred HHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 535 ELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 535 YLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
.|..+|.++.++..... ..-...|..-+=..-|...+..++++.||++|++||+
T Consensus 51 ~l~~~g~~~~~~~~~~~----~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 51 RLMHLGFNVYVVGETTT----PSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHhCCCeEEEeCCccc----CCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 57889999998865431 1122333333334558889999999999999999975
No 214
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=24.48 E-value=1.1e+02 Score=37.48 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=52.0
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC---CCCC---CCccCCCcCCCC-----CCHHHHHHHHHHHHHcCCEEEE
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGY---MPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s---~hGY---d~~Dy~~IDp~l-----Gt~edfk~LV~aAH~rGIkVIL 592 (858)
.++..+...+..|+++||. |.|-=+-...+ +-.. -+.||-+||..| +...-++.++.-||..||+||.
T Consensus 536 ~~~~~~~~~~~~l~~~G~~-ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~via 614 (660)
T PRK11829 536 QDLDEALRLLRELQGLGLL-IALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMA 614 (660)
T ss_pred cCHHHHHHHHHHHHhCCCE-EEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 4567888899999999997 44433222211 2233 567888888543 3445678888899999999999
Q ss_pred EEeeccc
Q 003004 593 DVVLNHR 599 (858)
Q Consensus 593 D~V~NHt 599 (858)
.+|=+..
T Consensus 615 egVEt~~ 621 (660)
T PRK11829 615 EGVETEE 621 (660)
T ss_pred ecCCCHH
Confidence 9985543
No 215
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=24.37 E-value=1.4e+02 Score=34.06 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~~ 602 (858)
.++|+.|+++|||.|.|..= + .+..-...+. +--+.++..+.++.|++.|+. |-+|+.+..-+..
T Consensus 103 ~~~l~~l~~~G~nrislGvQ--S-----~~~~~L~~l~-R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt 168 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQ--T-----FDDPLLKLLG-RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQS 168 (370)
T ss_pred HHHHHHHHHCCCCEEEEccc--c-----CCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 68899999999999987541 1 1111122222 222578888899999999996 8899999877654
No 216
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.17 E-value=1.7e+02 Score=27.17 Aligned_cols=69 Identities=16% Similarity=0.050 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHHHHhCC-CCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 523 GRWYMELKEKATELSSLG-FSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LG-VnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
|+.+.-...--.+|..+| +.+....+ .+.. ....-...|..-+=..=|...+..+.++.|+++|.+||.
T Consensus 8 G~S~~~a~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 8 GTSYHAALVAKYLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 333332333344667776 77776552 2111 111123344333335568888999999999999999874
No 217
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.50 E-value=1.8e+02 Score=31.00 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCCEEEeCC
Q 003004 529 LKEKATELSSLGFSVIWLPP 548 (858)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~P 548 (858)
+.+.|+.++++|++.|.|..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~ 36 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF 36 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 47788999999999999854
No 218
>PRK08114 cystathionine beta-lyase; Provisional
Probab=23.44 E-value=71 Score=36.97 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=41.6
Q ss_pred HHHHhCCCCEEEeCCCCC----CCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcC--CEEEEEEeec
Q 003004 534 TELSSLGFSVIWLPPPTE----SVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG--MKILGDVVLN 597 (858)
Q Consensus 534 dYLk~LGVnaI~L~PIfe----s~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rG--IkVILD~V~N 597 (858)
..++..||+..++.+.-. ..-...-...=.-.+-...|...|++++++.||++| +.||+|.++-
T Consensus 120 ~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a 189 (395)
T PRK08114 120 KILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWA 189 (395)
T ss_pred HHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCc
Confidence 467889999999876310 000111111111223345677789999999999985 9999999863
No 219
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.42 E-value=1.8e+02 Score=28.95 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcC-CEEEEEEeecccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHRC 600 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rG-IkVILD~V~NHtg 600 (858)
.+.++.|+++|++.|.++.=.-.. +-|+ .+.+ -++.+.+.+.++.+++.| +.|.+.+++++.+
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~--~~~~-----~~~~-~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~ 163 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSD--EVLK-----AINR-GHTVEDVLEAVEKLREAGPIKVSTDLIVGLPG 163 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCH--HHHH-----HhcC-CCCHHHHHHHHHHHHHhCCcceEEeEEecCCC
Confidence 677889999999988886532111 1111 1222 245699999999999999 9999999888664
No 220
>PF03714 PUD: Bacterial pullanase-associated domain; InterPro: IPR005323 Domain is found in pullanase - carbohydrate de-branching - proteins. It is found both to the N or the C-termini of of the alpha-amylase active site region. This domain contains several conserved aromatic residues that are suggestive of a carbohydrate binding function.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2J43_A 2J44_A 2YA1_A 2FHC_A 2FHB_A 2FHF_A 2J73_B 2J72_A 2J71_A.
Probab=23.13 E-value=1.3e+02 Score=27.72 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=27.7
Q ss_pred EEEEeecCCCCceeeEEEEEeCCccchhhcCCcceeEeCcc
Q 003004 175 QVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVD 215 (858)
Q Consensus 175 ~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~~~g~df~v~l~~ 215 (858)
+...+|++......|+|+++.+.. |+.++|..|++..
T Consensus 46 G~~~~i~~~~~~~~igfIv~~~~~----kd~~~D~~i~~~~ 82 (103)
T PF03714_consen 46 GAYADIPLKGGASKIGFIVRKGDW----KDQGGDRFIDLTS 82 (103)
T ss_dssp EEEEEEEBSTSSSEEEEEEEETTE----ECSSSEEEEETTT
T ss_pred ceEEEEEeCCCCCEEEEEEEcCCC----CCCCCCEEEEecc
Confidence 344555555666679999998844 7799999999953
No 221
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.01 E-value=1.8e+02 Score=30.39 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=40.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
+++-...++.++.+.+.|+++|-+.|+... .+..++++|.+.||.||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~----------------------~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDPD----------------------SLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSSTT----------------------TTHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCHH----------------------HHHHHHHHHhhcCceEEE
Confidence 456688899999999999999999987532 356788999999999997
No 222
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=22.90 E-value=1.5e+02 Score=32.15 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecc
Q 003004 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (858)
Q Consensus 531 ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NH 598 (858)
+.+..+.+-.+.+|++.++. ++ .|+- =+.+++++|++.||++|+.||+|.++..
T Consensus 123 ~~~~~~~~~~~~~v~i~~~~-~~--tG~~-----------~~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 123 ELLEAAKTPKTKLLYLNNPN-NP--TGAV-----------LSEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred HHHHhhcCccceEEEEECCC-CC--CCcc-----------cCHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 44555555677888887732 22 1211 1468999999999999999999998653
No 223
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.76 E-value=1.8e+02 Score=31.20 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeec
Q 003004 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~N 597 (858)
.+..+-++.+++.|+++|-+. |-.+=..++.+++++.+|++||++++=+-++
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~-------------------dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFP-------------------DLLIDYPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEEC-------------------CCCCCcHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 356677888999999999983 1011124678899999999999999966553
No 224
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=22.55 E-value=1.7e+02 Score=33.29 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccc
Q 003004 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHt 599 (858)
|++.+.+.+. + .+.+|.+.|++... |..+. +.+.+++|++-|+++|+-||.|-|....
T Consensus 164 d~~~l~~~l~---~-~~~avivep~~~~~---G~~~~----------~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 221 (389)
T PRK01278 164 DIEALKAAIT---P-NTAAILIEPIQGEG---GIRPA----------PDEFLKGLRQLCDENGLLLIFDEVQCGM 221 (389)
T ss_pred CHHHHHHhhC---C-CeEEEEEecccCCC---CCcCC----------CHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 4555554442 2 57899999984322 21111 3679999999999999999999997543
No 225
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.49 E-value=2.3e+02 Score=28.23 Aligned_cols=58 Identities=19% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHH----HHHHHHHHHHcCCEEEEEEeeccc
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE----LKDVVNKFHDVGMKILGDVVLNHR 599 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~ed----fk~LV~aAH~rGIkVILD~V~NHt 599 (858)
.+..++...+.+++|+++|-+.|.+-.. .+ ++.+. ++++++++ +.++-||+...+.++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~------------~~---~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSL------------KE---GDWEEVLEEIAAVVEAA-DGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHH------------hC---CCHHHHHHHHHHHHHHh-cCCceEEEEEECCCC
Confidence 6888999999999999999998765111 10 12444 44444444 459999998876544
No 226
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=22.15 E-value=1.6e+02 Score=30.34 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHhCCCCEEEeCCCCCCCC---CCCCCCccCCCcCCCC--------CCHHHHHHHHHHHHHcCCEEEEE
Q 003004 525 WYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILGD 593 (858)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s---~hGYd~~Dy~~IDp~l--------Gt~edfk~LV~aAH~rGIkVILD 593 (858)
+...+.+.+..|+++|+. |+|-=+-.... .-..-..||-++|..+ ....-++.++..||..|++||+.
T Consensus 130 ~~~~~~~~~~~l~~~G~~-l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 130 DLEEALATLRRLRALGVR-IALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CHHHHHHHHHHHHHCCCe-EEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 345678888999999997 44422211111 1112235677777544 33567999999999999999999
Q ss_pred Eeecccc
Q 003004 594 VVLNHRC 600 (858)
Q Consensus 594 ~V~NHtg 600 (858)
.|=|...
T Consensus 209 gVe~~~~ 215 (240)
T cd01948 209 GVETEEQ 215 (240)
T ss_pred ecCCHHH
Confidence 9866543
No 227
>PRK04302 triosephosphate isomerase; Provisional
Probab=22.03 E-value=1.6e+02 Score=31.01 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 003004 533 ATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (858)
Q Consensus 533 LdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~ 594 (858)
++.|+++|++.|-+ |--|.. -..++..+++++|++.||.+|++.
T Consensus 78 ~~~l~~~G~~~vii-~~ser~-----------------~~~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 78 PEAVKDAGAVGTLI-NHSERR-----------------LTLADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHcCCCEEEE-eccccc-----------------cCHHHHHHHHHHHHHCCCeEEEEc
Confidence 88999999999954 321111 123458899999999999999743
No 228
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.95 E-value=1.5e+02 Score=28.55 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCCCCCC---------CCC--CccCCCcCCCCCCHHHHHHHHHHHHH
Q 003004 527 MELKEKATELSSLGFSVIWLPPPTESVSPE---------GYM--PRDLYNLSSRYGNIDELKDVVNKFHD 585 (858)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~h---------GYd--~~Dy~~IDp~lGt~edfk~LV~aAH~ 585 (858)
..+.+.|+.|.+.|++.|.+.|.+-.++-| .|. -....--.|-+.+.+|..++++++++
T Consensus 56 p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 56 DTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 346888999999999999999998766421 122 11222224666677888888887764
No 229
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.93 E-value=75 Score=33.71 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeec
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~N 597 (858)
........++|.++|=+..-+.......++- ..+++++++++||+.||+||+...+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~-----------~~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDE-----------VIEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHH-----------HHHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHH-----------HHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 5677788999999998876541110000000 15789999999999999999997764
No 230
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.85 E-value=2.2e+02 Score=30.46 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
++...++++.++|++.|.|...-. +.|... .-+.++.++|.+.+.++||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~----~~~~~~--------~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNP----RSWKGV--------RLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCC----CCCCCC--------CCCHHHHHHHHHHHHHcCCCEEE
Confidence 457899999999999999854321 112111 23567788888889999999754
No 231
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=21.75 E-value=1.8e+02 Score=33.65 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~ 602 (858)
.++|..|+++|||-|.|-.= + .+..-...+ -+.-+.++..+.++.|++.++.|-+|++++.-+..
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQ--S-----~~d~~L~~l-gR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQ--S-----LKEDDLKKL-GRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHHCCCCEEEEECC--c-----CCHHHHHHc-CCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 58999999999999998541 1 111111112 23345788888889999999999999999987764
No 232
>PRK09028 cystathionine beta-lyase; Provisional
Probab=21.70 E-value=1e+02 Score=35.70 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEeec
Q 003004 570 YGNIDELKDVVNKFHDVGMKILGDVVLN 597 (858)
Q Consensus 570 lGt~edfk~LV~aAH~rGIkVILD~V~N 597 (858)
.|...+++++++.||++|+.||+|-++-
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4788999999999999999999999874
No 233
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=21.61 E-value=71 Score=39.73 Aligned_cols=75 Identities=9% Similarity=0.133 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC---CCCCCCccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEE
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s---~hGYd~~Dy~~IDp~lGt--------~edfk~LV~aAH~rGIkVIL 592 (858)
.++..+.+.|..|+++||.. .|-=+-.+.+ +-.--+.||-+||..|-. ..-++.++.-||+.||+||.
T Consensus 675 ~~~~~~~~~l~~l~~~G~~i-~ld~fg~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via 753 (799)
T PRK11359 675 EHDTEIFKRIQILRDMGVGL-SVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVA 753 (799)
T ss_pred cCHHHHHHHHHHHHHCCCEE-EEECCCCchhhHHHHhhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 34678899999999999964 4432222211 111224788899987622 23589999999999999999
Q ss_pred EEeeccc
Q 003004 593 DVVLNHR 599 (858)
Q Consensus 593 D~V~NHt 599 (858)
++|=+..
T Consensus 754 ~gVe~~~ 760 (799)
T PRK11359 754 EGVETKE 760 (799)
T ss_pred EcCCCHH
Confidence 9986654
No 234
>PLN02721 threonine aldolase
Probab=21.44 E-value=1.7e+02 Score=32.32 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHhC---CCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEee
Q 003004 525 WYMELKEKATELSSL---GFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (858)
Q Consensus 525 dl~GI~ekLdYLk~L---GVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~ 596 (858)
|++.+.+++.....- ...+|+|.|+..+++..-+ +.+++++|++.||++|+.||+|...
T Consensus 119 d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~-------------~~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 119 DLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCL-------------SVEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred CHHHHHHHHHhccCCCCCcceEEEEeccccccCCccc-------------cHHHHHHHHHHHHHcCCEEEEEchh
Confidence 566666666432111 2457888776544431111 2567999999999999999999864
No 235
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.38 E-value=1.1e+02 Score=39.77 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCC---CCCCccCCCcCCCC--------CCHHHHHHHHHHHHHcCCEEEE
Q 003004 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPE---GYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~h---GYd~~Dy~~IDp~l--------Gt~edfk~LV~aAH~rGIkVIL 592 (858)
.+.+.+.+.+..|+++||.. .|-=+-...++. .--+.||-+||..| +...-++.+++.||+.||+||.
T Consensus 971 ~~~~~~~~~~~~l~~~G~~~-~lddfg~g~~~~~~l~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ia 1049 (1092)
T PRK09776 971 NHAESASRLVQKLRLAGCRV-VLSDFGRGLSSFNYLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIA 1049 (1092)
T ss_pred cCHHHHHHHHHHHHHCCcEE-EEcCCCCCchHHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEe
Confidence 34677888899999999854 333222111111 12268888999655 2234588899999999999999
Q ss_pred EEeecc
Q 003004 593 DVVLNH 598 (858)
Q Consensus 593 D~V~NH 598 (858)
.+|=+.
T Consensus 1050 egVEt~ 1055 (1092)
T PRK09776 1050 GPVELP 1055 (1092)
T ss_pred cccCCH
Confidence 988543
No 236
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.30 E-value=1.9e+02 Score=31.10 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
+.+.++-++++|+++|.|.+-- .+. .+.+.--+.++++++.+.+.++||+|..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~----~~~-------~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDE----SDE-------RLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCc----ccc-------chhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 4888999999999999995321 111 0111112567899999999999999863
No 237
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.67 E-value=3e+02 Score=25.74 Aligned_cols=67 Identities=19% Similarity=0.048 Sum_probs=41.3
Q ss_pred CCcHHHHHHHHHHHHh-CCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 523 GRWYMELKEKATELSS-LGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~-LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
|+..-.....-.++.. +|+..+...+... . ..-...|..-+=+.-|...+..+.++.|+++|++||.
T Consensus 8 G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~-~--~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 8 GGSGIGGDLLESLLLDEAKIPVYVVKDYTL-P--AFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEecCccC-c--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4433333333345566 4898888765221 1 1112333333346678889999999999999999973
No 238
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.66 E-value=9e+02 Score=27.32 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=65.0
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccccccCCCCC
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 609 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHtg~~~~~~~g~ 609 (858)
.+.|+-..+.|++.|-+.= +....+..++.|+.|+++|++|.+-+..-|..
T Consensus 91 ~~dl~~a~~~gvd~iri~~--------------------~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~--------- 141 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVAT--------------------HCTEADVSEQHIGLARELGMDTVGFLMMSHMA--------- 141 (337)
T ss_pred HHHHHHHHHcCCCEEEEEE--------------------ecchHHHHHHHHHHHHHCCCeEEEEEEeccCC---------
Confidence 3456777788999887531 11113578999999999999987665433211
Q ss_pred ccccCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhHhccCccEEEe-CCcccchhHH
Q 003004 610 WNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGY 688 (858)
Q Consensus 610 w~~~~g~~~w~~~~~~~~~p~f~~~g~~~~~~~~~~lPdLN~~np~Vr~~i~~~l~~Wl~e~GIDGFRl-Daa~~~~~~~ 688 (858)
+ .+++.+.++... ++|+|.+++ |.+..+.++-
T Consensus 142 -------------------------------------------~---~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~ 174 (337)
T PRK08195 142 -------------------------------------------P---PEKLAEQAKLME-SYGAQCVYVVDSAGALLPED 174 (337)
T ss_pred -------------------------------------------C---HHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHH
Confidence 0 135666666666 799999997 8887666554
Q ss_pred HHHHHh----hcCCeEEEEEeeCC
Q 003004 689 VKDYLE----ATEPYFAVGEYWDS 708 (858)
Q Consensus 689 i~~i~~----~~~p~~liGE~w~~ 708 (858)
+.++++ ..+|-.-+|=+.++
T Consensus 175 v~~~v~~l~~~l~~~i~ig~H~Hn 198 (337)
T PRK08195 175 VRDRVRALRAALKPDTQVGFHGHN 198 (337)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 444444 33333445555554
No 239
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.62 E-value=2.6e+02 Score=29.59 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCCEEEeC
Q 003004 529 LKEKATELSSLGFSVIWLP 547 (858)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~ 547 (858)
+.+.++-++++|++.|.|.
T Consensus 16 l~e~~~~~~e~G~~~vEl~ 34 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYL 34 (254)
T ss_pred HHHHHHHHHHcCCCEEEec
Confidence 4666777788888888885
No 240
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=20.60 E-value=2.6e+02 Score=31.26 Aligned_cols=60 Identities=13% Similarity=0.299 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEee
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVL 596 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~ 596 (858)
.+.++.|++.|++.|.++- ++.++.-|..+-..-|+.+...+-+++|.+.|+. |-+-+|+
T Consensus 102 ~~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSL-------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 4678899999999998765 3333333344433346788999999999999997 7777665
No 241
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.51 E-value=1.2e+02 Score=34.28 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVILD~V~NHt 599 (858)
.+.|..||+.|++.++. .+..-++..=+..|-|.=-+.++..+.++.||+.||++--=+.+.|-
T Consensus 141 ~e~l~~LkeAGl~~i~~------~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~ 204 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG------TAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHV 204 (343)
T ss_pred HHHHHHHHHhCcccccC------cchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecC
Confidence 68899999999999861 11111222222234332226678899999999999999888888766
No 242
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=20.48 E-value=1.8e+02 Score=32.98 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEEeecccccc
Q 003004 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (858)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIk-VILD~V~NHtg~~ 602 (858)
.++|..|+++|++.|.|.- ++.+ ..-+..++ +-.+.++..+.++.+++.|+. |-+|+.++..+..
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~-----d~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt 164 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQ-----NSLLKYLG-RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQT 164 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCC-----HHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Confidence 5889999999999988755 2221 11112222 334688999999999999997 7799998876654
No 243
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=20.43 E-value=1.4e+02 Score=36.92 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCC----HHHHHHHHHHHHHcCCEEEEEEee
Q 003004 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN----IDELKDVVNKFHDVGMKILGDVVL 596 (858)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt----~edfk~LV~aAH~rGIkVILD~V~ 596 (858)
..+.+.|.-.|.+|+|++-+..+.-+. +.|.-|. .-|.. +++.|++.|++|||==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~------------~eP~eG~fdf~~~D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNL------------HEPEEGKFDFTWLDEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeec------------cCccccccCcccchHH-HHHHHHhcCceEEEecCC
Confidence 467899999999999999998776432 2222221 23344 899999999999986544
No 244
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.43 E-value=1.2e+02 Score=26.09 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=35.8
Q ss_pred HHHhC-CCCEEEeCCCCCCCC--CCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003004 535 ELSSL-GFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (858)
Q Consensus 535 YLk~L-GVnaI~L~PIfes~s--~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGIkVIL 592 (858)
.|..+ |+++..+.+...... ....+..|..-+=..-|...+..++++.|+++|+++|.
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 19 ELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 44677 988887665321111 01122333333334557778899999999999999874
No 245
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.37 E-value=3.5e+02 Score=28.92 Aligned_cols=61 Identities=11% Similarity=0.265 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCC-HHHHHHHHHHHHHcCCEEEEEEe
Q 003004 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN-IDELKDVVNKFHDVGMKILGDVV 595 (858)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt-~edfk~LV~aAH~rGIkVILD~V 595 (858)
++-+...++.-+.||+..|-+.|... +|... -+..+-. .+.+++|++.|.++||+|.+.-.
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~-----~~~~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHA-----GYLTP----PNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCC-----CCCCC----HHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 56777888999999999998877532 22211 0111111 13599999999999999998843
No 246
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.19 E-value=3.2e+02 Score=30.30 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEee
Q 003004 573 IDELKDVVNKFHDVGMKILGDVVL 596 (858)
Q Consensus 573 ~edfk~LV~aAH~rGIkVILD~V~ 596 (858)
.+++.+-|..|+++||+|+--+.+
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~ 190 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLIN 190 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEee
Confidence 456889999999999999766554
No 247
>PLN02808 alpha-galactosidase
Probab=20.17 E-value=1.7e+02 Score=33.81 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=35.5
Q ss_pred HHHHHHHHHH-----HHhCCCCEEEeCCCCCCCC--CCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEE
Q 003004 526 YMELKEKATE-----LSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKI 590 (858)
Q Consensus 526 l~GI~ekLdY-----Lk~LGVnaI~L~PIfes~s--~hGYd~~Dy~~IDp-~lGt~edfk~LV~aAH~rGIkV 590 (858)
-+-|.+.++. |+++|++.|-|=-=+.... ..| ....|| +|- ..|+.|++.+|++|||.
T Consensus 48 e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G-----~~~~d~~rFP--~G~~~lad~iH~~Glkf 113 (386)
T PLN02808 48 ETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQG-----NLVPKASTFP--SGIKALADYVHSKGLKL 113 (386)
T ss_pred HHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCC-----CEeeChhhcC--ccHHHHHHHHHHCCCce
Confidence 3455566665 7999999998833221110 111 122232 332 46999999999999986
No 248
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=20.16 E-value=2.5e+02 Score=31.22 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEEee
Q 003004 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVL 596 (858)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aAH~rGI-kVILD~V~ 596 (858)
+.+.++.|++.|++.|.++- ++.+..-|..+... ++.+.+.+-++.|.+.|+ .|.+-.|+
T Consensus 107 l~~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSL-------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEe-------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 35678899999999988765 33333334445443 678899999999999999 77777665
No 249
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.09 E-value=2.5e+02 Score=31.74 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCC-----C-CCCCCCcc-CCCcCCCCC-------CHHHHHHHHHHHHHcCC
Q 003004 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV-----S-PEGYMPRD-LYNLSSRYG-------NIDELKDVVNKFHDVGM 588 (858)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~-----s-~hGYd~~D-y~~IDp~lG-------t~edfk~LV~aAH~rGI 588 (858)
+|+++-..+.++-.++.|.++|=+-= |... + .-.|...+ .+.-.+.|. +.+++++|.+.|++.||
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi 91 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQT-YTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGL 91 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeee-ccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCC
Confidence 58999999999999999999987643 2111 0 01121111 111011111 25788999999999999
Q ss_pred EEEEEE
Q 003004 589 KILGDV 594 (858)
Q Consensus 589 kVILD~ 594 (858)
.++-..
T Consensus 92 ~~~stp 97 (327)
T TIGR03586 92 TIFSSP 97 (327)
T ss_pred cEEEcc
Confidence 997553
Done!